Citrus Sinensis ID: 047260

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780----
Protein Sequence
MAQGNWEADKMLDVYIHDYFLKRKLHASAKAFMTEGKVATDPVAIDAPGGFLFEWWSVFWDIFISRTNDKHSENAAAYIETQQIKTREQQQLQMQQLQFMQHRNAQLQRRDPNHPSLGGSVSALNSEGMMGQPSASVLAMKMYEERTKHPHSMDLDTSPALMDANKMALLKATTNPQGQLAQGSSGNISAAMQRIQGRTTLTSDIKSEANLGATQKSLPMDPSSMYGQAMFQPKSVLGSSGLNQGVAGLPLKGWPLIGPDQLRPGLGMQVQKPNMQMHNQFLLASQQPQQVLAQGQPPNNLRNSTSYGDMDPRNFCQLTRGNMNVKDGQSTRNDGSICSPVQSSSPKMKVAQMQHSSSQHQDQLQQQQPQQLPQGNRKRKNSSSGAANSTGTGNTVGPSPNSPPSTHTPGDGITTPTSMQHVNNMHKTLMMNGSEGTGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKLWK
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHHHHcHHHHHHHHHHccccccccEEEEccccEEEHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccHHHHHHccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccHHHHHHccccccccccccccccccccccccccEEEEEEcccccccEEccccccEEccccccccEEEEEEEEEEccccEEEEccccccccccEEEEEEEccccEEEEEEccccccccEEEEccccccccEEccccccccEEEEEccccccEEEEEEcccccEEEEEcccccEEEEEccccccccccccccccEEEEEEcccccEEEEccccccEEEEEcccccccccccccccccEEEEEEcccccEEEEEccccccEEEEEccccEEEEEEcccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEcccccccEEEEEEcccccEEEEEcccEEEEEEcccccEEEEEEEccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEccccccEEEEEEcccccEEEEEEccccEEEcc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccHcHHHHHHccccccccEEEcccccccHHHHHHHcccccccccccccccccccccccccHHHHHcccccccccccEccccccccccccccccccccHHHHcccccccccccccccccHHcccccHHHHHHHHHHHHcccccccccccccccHcccccccccccccccccccccccccccccccccccHHHcccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccEEccccccEEEEEEcccccEEEEEcccccEEEEEEEEcccccccEEEEEccccccccccccEEEEcccccEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEEcccccEEEEEEccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEcccccEEEEEc
Coil and Loop (DISEMBL)
MAQGNWEADKMLDVYIHDYFLKRKLHASAKAFMTegkvatdpvaidapggfLFEWWSVFWDIFISrtndkhsenAAAYIETQQIKTREQQQLQMQQLQFMQHRNaqlqrrdpnhpslggsvsalnsegmmgqpsASVLAMKMYEertkhphsmdldtspalmDANKMALLKAttnpqgqlaqgssgNISAAMQRIQGRTTLTsdikseanlgatqkslpmdpssmygqamfqpksvlgssglnqgvaglplkgwpligpdqlrpglgmqvqkpnmqMHNQFLLASQQpqqvlaqgqppnnlrnstsygdmdprnfcqltrgnmnvkdgqstrndgsicspvqssspkmkvAQMQHSSSQHQDQLQqqqpqqlpqgnrkrknsssgaanstgtgntvgpspnsppsthtpgdgittptsmqHVNNMHKTLmmngsegtgslASASNLLEDIdrfadvgsiDENMESllshdggdgrelygtlkhspehqkqptkgftfcevgcirsrnskvtcchfssdgkllassghdRKVVLWNMdtlqtestpedhksvvtdvrfrpnssqlataSVDKSVRlwdaanpnfcsqaytghsspimsldfhpkktdlfcfcdndneiqywsinpflcthitkggtaqvrFQPRIGQLLAAASDKVVSIFDIetdrqthslqGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELssngnqfhscvfhpsysTLLVVGGISSLELWNMAENKSMTIAAHENIISALaqspvtgmvasashdssvklwk
Flexible Loop (DISEMBL)
MAQGNWEADKMLDVYIHDYFLKRKLHASAKAFMTEGKVATDPVAIDAPGGFLFEWWSVFWDIFISRTNDKHSENAAAYIETQQIKTREQQQLQMQQLQFMQHRNAQLQRRDPNHPSLGGSVSALNSEGMMGQPSASVLAMKMYEERTKHPHSMDLDTSPALMDANKMALLKATTNPQGQLAQGSSGNISAAMQRIQGRTTLTSDIKSEANLGATQKSLPMDPSSMYGQAMFQPKSVLGSSGLNQGVAGLPLKGWPLIGPDQLRPGLGMQVQKPNMQMHNQFLLASQQPQQVLAQGQPPNNLRNSTSYGDMDPRNFCQLTRGNMNvkdgqstrndgsICSPVQSSSPKMKVAQMQHSSSQHQDQLQQQQPQQLPQGNRKRKNSSsgaanstgtgntvgpspnspPSTHTPGDGITTPTSMQHVNNMHKTLMMNGSEGTGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKhspehqkqptkgFTFCEVGCIRSRNSKVTCCHFSSdgkllassghDRKVVLWNMDTlqtestpedhksvvtdvrfrpnssqlatasvdksvRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIAAHENIISALAQSPVTGMVasashdssvklwk
Low Complexity Region (SEG)
MAQGNWEADKMLDVYIHDYFLKRKLHASAKAFMTEGKVATDPVAIDAPGGFLFEWWSVFWDIFISRTNDKHSENAAAYIETQQIKTREqqqlqmqqlqfmqHRNAQLQRRDPNHPSLGGSVSALNSEGMMGQPSASVLAMKMYEERTKHPHSMDLDTSPALMDANKMALLKATTNPQGQLAQGSSGNISAAMQRIQGRTTLTSDIKSEANLGATQKSLPMDPSSMYGQAMFQPKSVLGSSGLNQGVAGLPLKGWPLIGPDQLRPGLGMQVQKPNMQMHNQFllasqqpqqvlaqgqppNNLRNSTSYGDMDPRNFCQLTRGNMNVKDGQSTRNDGSICSPVQSSSPKMKVAqmqhsssqhqdqlqqqqpqqlpqGNRKRKnsssgaanstgtgntVGpspnsppsTHTPGDGITTPTSMQHVNNMHKTLMMNGSEGTGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKLWK
Disordered region (IsUnstruct)
******EADKMLDVYIHDYFLKRKLHASAKAFMTEGKVATDPVAIDAPGGFLFEWWSVFWDIFISRT*******************************************************************************************************************************************************************************NQGVAGLPLKGWPLIGP******************************************************************************************************************************************************************************************************************************************GFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDT******************************VDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIAAHENIISALA*********************
Disordered Region (DISOPRED)
********DKMLDVYIHDYFLKRKLHASAKAFMTEGKVATDPVAIDAPGGFLFEWWSVFWDIF**********************************************************************SASVLAMKMYEER***************MDAN*MA*******************************************************************************GLPLKGWPLIGPDQL****************************************************************************************************************************ANSTGTGNTVGPSPNSPPSTHTPGDGITTPTSMQHVNNMHKTLMMNGSEGTGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKLWK
Disordered Region (DISEMBL)
MAQGNWEADKMLDVYIHDYFLKRKLHASAKAFMTEGKVATDPVAIDAPGGFLFEWWSVFWDIFISRTNDKHSENAAAYIETQQIKTREQQQLQMQQLQFMQHRNAQLQRRDPNHPSLGGSVSALNSEGMMGQPSASVLAMKMYEERTKHPHSMDLDTSPALMDANKMALLKATTNPQGQLAQGSSGNISAAMQRIQGRTTLTSDIKSEANLGATQKSLPMDPSSMYGQAMFQPKSVLGSSGLNQGVAGLPLKGWPLIGPDQLRPGLGMQVQKPNMQMHNQFLLASQQPQQVLAQGQPPNNLRNSTSYGDMDPRNFCQLTRGNMNVKDG********************************************************************************PGDGITTPTSMQHVNNMHKTLMMNGSEGTGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIAAHENIISALAQSPV*****************
Disordered Region (DISPRO)
****NWEADKMLDVYIHDYFLKRKLHASAKAFMTEGKVATDPVAIDAPGGFLFEWWSVFWDIFISRTNDKHSENAAAYIETQQIKTREQQQLQMQQLQFMQHRNAQL***********G************QP**************K**********PALMDANKMALLKATTNPQGQLAQ**SGNISAAMQRIQGRTTLTSDIKSEANLGATQKSLPMDPSSMYGQAMFQPKSVLGSSGLNQGVAGLPLKGWPLIGPDQLRPGLGMQVQKPNMQMHNQFLLASQQPQQVLAQGQPPN****************************************************************************************************************GITTPTSMQHVNNMHKTLMMNGSEGTGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKLWK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAQGNWEADKMLDVYIHDYFLKRKLHASAKAFMTEGKVATDPVAIDAPGGFLFEWWSVFWDIFISRTNDKHSENAAAYIETQQIKTREQQQLQMQQLQFMQHRNAQLQRRDPNHPSLGGSVSALNSEGMMGQPSASVLAMKMYEERTKHPHSMDLDTSPALMDANKMALLKATTNPQGQLAQGSSGNISAAMQRIQGRTTLTSDIKSEANLGATQKSLPMDPSSMYGQAMFQPKSVLGSSGLNQGVAGLPLKGWPLIGPDQLRPGLGMQVQKPNMQMHNQFLLASQQPQQVLAQGQPPNNLRNSTSYGDMDPRNFCQLTRGNMNVKDGQSTRNDGSICSPVQSSSPKMKVAQMQHSSSQHQDQLQQQQPQQLPQGNRKRKNSSSGAANSTGTGNTVGPSPNSPPSTHTPGDGITTPTSMQHVNNMHKTLMMNGSEGTGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKLWK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	784	2.2.26 [Sep-21-2011]
Q9FUY2	931	Transcriptional corepress	no	no	0.514	0.432	0.558	1e-132
Q8YRI1	1526	Uncharacterized WD repeat	yes	no	0.360	0.185	0.317	2e-32
Q8YTC2	1258	Uncharacterized WD repeat	no	no	0.357	0.222	0.296	9e-32
Q00808	1356	Vegetative incompatibilit	no	no	0.355	0.205	0.283	3e-27
Q8YV57	1683	Uncharacterized WD repeat	no	no	0.357	0.166	0.282	5e-23
A8NEG8	434	Nuclear distribution prot	N/A	no	0.299	0.541	0.285	9e-23
Q9NDC9	404	Lissencephaly-1 homolog O	yes	no	0.334	0.648	0.270	4e-22
P0CS42	433	Nuclear distribution prot	yes	no	0.357	0.646	0.259	5e-22
P0CS43	433	Nuclear distribution prot	N/A	no	0.357	0.646	0.259	5e-22
P49695	742	Probable serine/threonine	no	no	0.311	0.328	0.262	3e-21

>sp|Q9FUY2|LEUNG_ARATH Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana GN=LUG PE=1 SV=2

 Score =  473 bits (1216), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 234/419 (55%), Positives = 309/419 (73%), Gaps = 16/419 (3%)

Query: 374 QGNRKRKN--SSSGAANSTGTGNTVGPSPNSPPST---HTPGDGITTPTSMQHVNNMHKT 428
           Q  RKRK   SSSG ANS+GT NT GPSP+S PST   HTPGD I+ P ++ H     K+
Sbjct: 521 QSGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDVISMP-NLPHSGGSSKS 579

Query: 429 LMMNGSEGTGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQ 488
           +MM G+EGTG+L S SN L D+DRF + GS+D+N+ES LS + GD R+       +    
Sbjct: 580 MMMFGTEGTGTLTSPSNQLADMDRFVEDGSLDDNVESFLSQEDGDQRD-------AVTRC 632

Query: 489 KQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDH 548
              +KGFTF EV  +R+  +KVTCCHFSSDGK+LAS+GHD+K VLW  DT++ ++T E+H
Sbjct: 633 MDVSKGFTFTEVNSVRASTTKVTCCHFSSDGKMLASAGHDKKAVLWYTDTMKPKTTLEEH 692

Query: 549 KSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLF 608
            +++TD+RF P+  +LAT+S DK+VR+WDA N  +  + + GHSS + SLDFHP K DL 
Sbjct: 693 TAMITDIRFSPSQLRLATSSFDKTVRVWDADNKGYSLRTFMGHSSMVTSLDFHPIKDDLI 752

Query: 609 CFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTH 668
           C CDNDNEI+YWSIN   CT + KGG+ Q+RFQPR+G+ LAA+S  +V++ D+ET    H
Sbjct: 753 CSCDNDNEIRYWSINNGSCTRVYKGGSTQIRFQPRVGKYLAASSANLVNVLDVETQAIRH 812

Query: 669 SLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMAS---GECIQELSSNGNQFHSCVFHP 725
           SLQGHA  +N +CWD +GD+LASVS+++VKVW++ +   GEC+ ELS NGN+F SCVFHP
Sbjct: 813 SLQGHANPINSVCWDPSGDFLASVSEDMVKVWTLGTGSEGECVHELSCNGNKFQSCVFHP 872

Query: 726 SYSTLLVVGGISSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKLWK 784
           +Y +LLV+G   SLELWNM+ENK+MT+ AHE +I++LA S  TG+VASASHD  VKLWK
Sbjct: 873 AYPSLLVIGCYQSLELWNMSENKTMTLPAHEGLITSLAVSTATGLVASASHDKLVKLWK 931

Transcription repressor subunit of the SEU-LUG transcriptional corepressor of the C class floral homeotic gene AGAMOUS during the early stages of floral meristem development. Is part of the A class cadastral complex that define the boundaries between the A and C class homeotic genes expression and function. Interacts together with APETALA2 and SEUSS to repress AGAMOUS expression. Also plays a role in ovule and pollen development.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score =  142 bits (357), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 92/290 (31%), Positives = 150/290 (51%), Gaps = 7/290 (2%)

Query: 499  EVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFR 558
            E+   +  NS V    FS DGK+LAS   D+ V LW++ + Q   T + H S V  V F 
Sbjct: 898  ELLTCKGHNSWVNSVGFSQDGKMLASGSDDQTVRLWDISSGQCLKTFKGHTSRVRSVVFS 957

Query: 559  PNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQ 618
            PNS  LA+ S D++VRLWD ++   C   + GH+  + S+ F+   + +      D  ++
Sbjct: 958  PNSLMLASGSSDQTVRLWDISSGE-CLYIFQGHTGWVYSVAFNLDGS-MLATGSGDQTVR 1015

Query: 619  YWSINPFLCTHITKGGTAQVR---FQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAE 675
             W I+   C +I +G T+ VR   F      L + + D+ V ++DI +    ++LQGH  
Sbjct: 1016 LWDISSSQCFYIFQGHTSCVRSVVFSSDGAMLASGSDDQTVRLWDISSGNCLYTLQGHTS 1075

Query: 676  LVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVG 734
             V  + +  +G  LAS   + +V++W ++SG C+  L    +     VF P+  TL    
Sbjct: 1076 CVRSVVFSPDGAMLASGGDDQIVRLWDISSGNCLYTLQGYTSWVRFLVFSPNGVTLANGS 1135

Query: 735  GISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLW 783
                + LW+++  K + T+  H N ++A+A SP    +AS S D +V+LW
Sbjct: 1136 SDQIVRLWDISSKKCLYTLQGHTNWVNAVAFSPDGATLASGSGDQTVRLW 1185

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1

 Score =  139 bits (350), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 86/290 (29%), Positives = 150/290 (51%), Gaps = 10/290 (3%)

Query: 502  CIRSRNSK---VTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFR 558
            C+R+  S    V    FS+DG+ LAS   DR + +WN  T +   T   H + V  + + 
Sbjct: 802  CLRTLKSHTGWVRSVAFSADGQTLASGSGDRTIKIWNYHTGECLKTYIGHTNSVYSIAYS 861

Query: 559  PNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQ 618
            P+S  L + S D++++LWD    + C +   GH++ + S+ F P    L C    D  ++
Sbjct: 862  PDSKILVSGSGDRTIKLWD-CQTHICIKTLHGHTNEVCSVAFSPDGQTLACV-SLDQSVR 919

Query: 619  YWSINPFLCTHITKGGTAQ---VRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAE 675
             W+     C     G T     V F P    L + ++DK V ++D +T +   SL+GH +
Sbjct: 920  LWNCRTGQCLKAWYGNTDWALPVAFSPDRQILASGSNDKTVKLWDWQTGKYISSLEGHTD 979

Query: 676  LVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVG 734
             +  I +  +   LAS S +  V++W++++G+C Q L  + +  ++ VFHP    +    
Sbjct: 980  FIYGIAFSPDSQTLASASTDSSVRLWNISTGQCFQILLEHTDWVYAVVFHPQGKIIATGS 1039

Query: 735  GISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLW 783
               +++LWN++  + + T++ H + I  +A SP   ++ASAS D SV+LW
Sbjct: 1040 ADCTVKLWNISTGQCLKTLSEHSDKILGMAWSPDGQLLASASADQSVRLW 1089

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1

 Score =  124 bits (311), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 81/286 (28%), Positives = 138/286 (48%), Gaps = 7/286 (2%)

Query: 503  IRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSS 562
            +    S V    FS+DG+ +AS   D+ + +W+  +     T E H   V  V F P+  
Sbjct: 837  LEGHGSSVLSVAFSADGQRVASGSDDKTIKIWDTASGTGTQTLEGHGGSVWSVAFSPDRE 896

Query: 563  QLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSI 622
            ++A+ S DK++++WDAA+   C+Q   GH   + S+ F P    +    D D+ I+ W  
Sbjct: 897  RVASGSDDKTIKIWDAASGT-CTQTLEGHGGRVQSVAFSPDGQRVASGSD-DHTIKIWDA 954

Query: 623  NPFLCTHITKG---GTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNY 679
                CT   +G       V F P   ++ + + DK + I+D  +   T +L+GH   V  
Sbjct: 955  ASGTCTQTLEGHGSSVLSVAFSPDGQRVASGSGDKTIKIWDTASGTCTQTLEGHGGSVWS 1014

Query: 680  ICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISS 738
            + +  +G  +AS S +  +K+W  ASG C Q L  +G    S VF P    +       +
Sbjct: 1015 VAFSPDGQRVASGSDDKTIKIWDTASGTCTQTLEGHGGWVQSVVFSPDGQRVASGSDDHT 1074

Query: 739  LELWNMAENK-SMTIAAHENIISALAQSPVTGMVASASHDSSVKLW 783
            +++W+      + T+  H + + ++A SP    VAS S D ++K+W
Sbjct: 1075 IKIWDAVSGTCTQTLEGHGDSVWSVAFSPDGQRVASGSIDGTIKIW 1120

Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c.

Podospora anserina (taxid: 5145)

>sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1

 Score =  110 bits (274), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 82/290 (28%), Positives = 141/290 (48%), Gaps = 10/290 (3%)

Query: 500  VGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRP 559
            V  ++  N  V   +FSSDGK +AS+  D  + LWN   ++ E T   H   V  V F P
Sbjct: 1274 VKTLKGHNDSVWDVNFSSDGKAIASASRDNTIKLWNRHGIELE-TFTGHSGGVYAVNFLP 1332

Query: 560  NSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQY 619
            +S+ +A+AS+D ++RLW    P          +S + ++ F    + +      D  IQ 
Sbjct: 1333 DSNIIASASLDNTIRLWQ--RPLISPLEVLAGNSGVYAVSFLHDGS-IIATAGADGNIQL 1389

Query: 620  W--SINPFLCTHITKGGTAQVRFQPRIGQLLAAA-SDKVVSIFDIETDRQTHSLQGHAEL 676
            W       L T         + F P+ G L+A+A +DK V I+ +   +   +L GH   
Sbjct: 1390 WHSQDGSLLKTLPGNKAIYGISFTPQ-GDLIASANADKTVKIWRVRDGKALKTLIGHDNE 1448

Query: 677  VNYICWDTNGDYLASVSQ-NLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGG 735
            VN + +  +G  LAS S+ N VK+W+++ G+  + L  + ++     F P    +     
Sbjct: 1449 VNKVNFSPDGKTLASASRDNTVKLWNVSDGKFKKTLKGHTDEVFWVSFSPDGKIIASASA 1508

Query: 736  ISSLELWN-MAENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKLWK 784
              ++ LW+  + N   ++ AH +++ ++  +P   M+AS S D +VKLW+
Sbjct: 1509 DKTIRLWDSFSGNLIKSLPAHNDLVYSVNFNPDGSMLASTSADKTVKLWR 1558

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|A8NEG8|LIS1_COPC7 Nuclear distribution protein PAC1 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) GN=PAC1 PE=3 SV=3

 Score =  109 bits (272), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 75/263 (28%), Positives = 129/263 (49%), Gaps = 28/263 (10%)

Query: 548 HKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDL 607
           H++ +T + F P  S LA+AS D +V++WD     F  +   GH+ P+  LDF   K  L
Sbjct: 107 HRAPLTSIAFHPQYSILASASEDTTVKIWDWETGEF-ERTLKGHTKPVNDLDF-DHKGHL 164

Query: 608 FCFCDNDNEIQYW-SINPFLCTHITKG---GTAQVRFQPRIGQLLAAASDKVVSIFDIET 663
              C +D  I+ W S N +  T    G     + VRF P    +++A+ D+ + +FD+ +
Sbjct: 165 LVTCSSDLFIKIWDSQNEWKNTKTFVGHDHAVSAVRFMPGDQLIVSASRDRTIRVFDVAS 224

Query: 664 DRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCV 722
             Q  +L GH+E V  +    +G  LAS S++  V++W   +GE   EL  + N   +  
Sbjct: 225 THQVRTLSGHSEWVRCVIPSADGTMLASGSKDQTVRLWDPLTGEPKSELRGHENDVEAVA 284

Query: 723 FHP--SYSTLLVVGGI------------------SSLELWNMAENKSM-TIAAHENIISA 761
           F P  +Y+ +  + GI                   +++LW+    + +  +A H+N + A
Sbjct: 285 FAPISAYAAIRELAGIPNDRTKRHGLFLASGARDKTVKLWDTQTGQMIRNLAGHDNWVRA 344

Query: 762 LAQSPVTGMVASASHDSSVKLWK 784
           LA  P    + S+S D +V++W+
Sbjct: 345 LAFHPSGKYLLSSSDDKTVRVWE 367

Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhances dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for nuclear migration during vegetative growth as well as development. Required for retrograde early endosome (EE) transport from the hyphal tip. Required for localization of dynein to the mitotic spindle poles. Recruits additional proteins to the dynein complex at SPBs.

Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) (taxid: 240176)

>sp|Q9NDC9|LIS1_CAEEL Lissencephaly-1 homolog OS=Caenorhabditis elegans GN=lis-1 PE=2 SV=1

 Score =  107 bits (266), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 128/285 (44%), Gaps = 23/285 (8%)

Query: 521 LLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAAN 580
           ++AS   D  + +W+ +T Q E T + H   V D+       QL + S D S++LWD   
Sbjct: 120 IMASCSEDATIKVWDYETGQLERTLKGHTDAVNDIAIDAAGKQLVSCSSDLSIKLWDFGQ 179

Query: 581 PNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRF 640
              C ++  GH   + S+ F P   D       D+ I+ W I+   C +  +G    VR 
Sbjct: 180 TYDCLKSLKGHEHTVSSVTFLPTG-DFVLSASRDHTIKQWDISTGYCVYTFRGHNDWVRM 238

Query: 641 QPRI---GQLLAAAS-DKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDY-------- 688
             RI   G L A+AS D+ V+++   T      L+ H   V  + W  +  Y        
Sbjct: 239 -IRISNDGTLFASASLDQTVTVWSFATKSAKLVLRDHEHAVECVEWAPDTAYTNVTGQQP 297

Query: 689 -------LASVSQNL-VKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLE 740
                  L S S++  +K W++ +G+ +  L ++ N      FHP    L+ V    +L 
Sbjct: 298 EGNSTHILFSGSRDRSIKAWNINTGDVLFTLLAHENWVRGLAFHPKGKYLISVADDKTLR 357

Query: 741 LWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLWK 784
           +W ++  + M  I AHE+ +S +A    +  V + S D S K+W+
Sbjct: 358 VWELSAQRCMKAIEAHEHFVSTVAFHQTSPFVITGSVDMSCKVWE 402

Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes such as nuclear migration during cell division. Required for neuronal cell differentiation.

Caenorhabditis elegans (taxid: 6239)

>sp|P0CS42|LIS1_CRYNJ Nuclear distribution protein PAC1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=PAC1 PE=3 SV=1

 Score =  107 bits (266), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 138/332 (41%), Gaps = 52/332 (15%)

Query: 503 IRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSS 562
           + S  + VT   F     LLAS+  D  V LW+ +    E T + H   V DV F P   
Sbjct: 101 LASHRAPVTRLAFHPTWTLLASASEDATVKLWDWEAGDMERTLKGHTKAVMDVDFDPRGG 160

Query: 563 QLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSI 622
            +AT S D +++LWD AN     +   GH   + S+ F P    L      D  I+ W +
Sbjct: 161 LMATCSSDLTLKLWDTANQYTNVKTLHGHDHSVSSVRFMPDGETLVS-ASRDKTIRVWQV 219

Query: 623 NPFLCTHITKGGTAQVR--FQPRIGQLLAAAS-DKVVSIFDIETDRQTHSLQGHAELVNY 679
           +   C     G    VR       G+ L +AS D+   I+D  T      L+GH  +V  
Sbjct: 220 SSGYCIKTFSGHAEWVREAVPSEDGRWLVSASNDQTSRIWDFSTGETKMELRGHEHVVEC 279

Query: 680 ICW---------------------DTN----GDYLASVSQN-LVKVWSMASGECIQELSS 713
             +                     DT     G Y A+ S++  +K+W   SG+C++ L  
Sbjct: 280 AVFAPVNAYPAIRELAGLKPPAPRDTRAKSPGVYAATGSRDKTIKLWDALSGQCLRTLVG 339

Query: 714 NGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENK-SMTIAAHENIISALAQSPVTG--- 769
           + N   + VFHPS   LL      ++++W++A  + + TI AH + ++++      G   
Sbjct: 340 HDNWIRALVFHPSGKYLLSASDDKTIKVWDLANGRCTKTIEAHSHFVTSMTWGRAVGASG 399

Query: 770 ------------------MVASASHDSSVKLW 783
                             ++A+ S D ++K+W
Sbjct: 400 GIEKVNGDASSKEPRRINVLATGSVDQTIKVW 431

Positively regulates the activity of the minus-end directed microtubule motor protein dynein. Plays a central role in positioning the mitotic spindle at the bud neck during cell division. Targets cytoplasmic dynein to microtubule plus ends, thereby promoting dynein-mediated microtubule sliding along the bud cortex and consequently the movement of the mitotic spindle to the bud neck.

Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)

>sp|P0CS43|LIS1_CRYNB Nuclear distribution protein PAC1 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=PAC1 PE=3 SV=1

 Score =  107 bits (266), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 138/332 (41%), Gaps = 52/332 (15%)

Query: 503 IRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSS 562
           + S  + VT   F     LLAS+  D  V LW+ +    E T + H   V DV F P   
Sbjct: 101 LASHRAPVTRLAFHPTWTLLASASEDATVKLWDWEAGDMERTLKGHTKAVMDVDFDPRGG 160

Query: 563 QLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSI 622
            +AT S D +++LWD AN     +   GH   + S+ F P    L      D  I+ W +
Sbjct: 161 LMATCSSDLTLKLWDTANQYTNVKTLHGHDHSVSSVRFMPDGETLVS-ASRDKTIRVWQV 219

Query: 623 NPFLCTHITKGGTAQVR--FQPRIGQLLAAAS-DKVVSIFDIETDRQTHSLQGHAELVNY 679
           +   C     G    VR       G+ L +AS D+   I+D  T      L+GH  +V  
Sbjct: 220 SSGYCIKTFSGHAEWVREAVPSEDGRWLVSASNDQTSRIWDFSTGETKMELRGHEHVVEC 279

Query: 680 ICW---------------------DTN----GDYLASVSQN-LVKVWSMASGECIQELSS 713
             +                     DT     G Y A+ S++  +K+W   SG+C++ L  
Sbjct: 280 AVFAPVNAYPAIRELAGLKPPAPRDTRAKSPGVYAATGSRDKTIKLWDALSGQCLRTLVG 339

Query: 714 NGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENK-SMTIAAHENIISALAQSPVTG--- 769
           + N   + VFHPS   LL      ++++W++A  + + TI AH + ++++      G   
Sbjct: 340 HDNWIRALVFHPSGKYLLSASDDKTIKVWDLANGRCTKTIEAHSHFVTSMTWGRAVGASG 399

Query: 770 ------------------MVASASHDSSVKLW 783
                             ++A+ S D ++K+W
Sbjct: 400 GIEKVNGDASSKEPRRINVLATGSVDQTIKVW 431

Positively regulates the activity of the minus-end directed microtubule motor protein dynein. Plays a central role in positioning the mitotic spindle at the bud neck during cell division. Targets cytoplasmic dynein to microtubule plus ends, thereby promoting dynein-mediated microtubule sliding along the bud cortex and consequently the movement of the mitotic spindle to the bud neck.

Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643)

>sp|P49695|PKWA_THECU Probable serine/threonine-protein kinase PkwA OS=Thermomonospora curvata GN=pkwA PE=3 SV=1

 Score =  104 bits (260), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 111/251 (44%), Gaps = 7/251 (2%)

Query: 499 EVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFR 558
           E+  +      V    FS DG LLAS   D  V LW++   +  +  E H   V D+ F 
Sbjct: 493 ELHTLEGHTDWVRAVAFSPDGALLASGSDDATVRLWDVAAAEERAVFEGHTHYVLDIAFS 552

Query: 559 PNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQ 618
           P+ S +A+ S D + RLW+ A          GH+  + ++ F P  + +      D  I+
Sbjct: 553 PDGSMVASGSRDGTARLWNVAT-GTEHAVLKGHTDYVYAVAFSPDGS-MVASGSRDGTIR 610

Query: 619 YWSINPFLCTHITKGGTAQV---RFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAE 675
            W +       + +     V    F P  G +L   SD  V ++D+ +    H+ +GH +
Sbjct: 611 LWDVATGKERDVLQAPAENVVSLAFSPD-GSMLVHGSDSTVHLWDVASGEALHTFEGHTD 669

Query: 676 LVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVG 734
            V  + +  +G  LAS S +  +++W +A+ E    L  +    HS  FHP  +TL    
Sbjct: 670 WVRAVAFSPDGALLASGSDDRTIRLWDVAAQEEHTTLEGHTEPVHSVAFHPEGTTLASAS 729

Query: 735 GISSLELWNMA 745
              ++ +W +A
Sbjct: 730 EDGTIRIWPIA 740

May play a regulatory role during the complex growth cycle and in secondary metabolite production.

Thermomonospora curvata (taxid: 2020)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	784
225465449	779	PREDICTED: transcriptional corepressor L	0.988	0.994	0.758	0.0
147838598	774	hypothetical protein VITISV_026282 [Viti	0.985	0.998	0.752	0.0
224065336	777	predicted protein [Populus trichocarpa]	0.983	0.992	0.757	0.0
255560171	766	WD-repeat protein, putative [Ricinus com	0.974	0.997	0.765	0.0
49523569	777	STY-L protein [Antirrhinum majus]	0.987	0.996	0.712	0.0
357505281	784	Transcriptional corepressor LEUNIG [Medi	0.988	0.988	0.712	0.0
356567862	775	PREDICTED: transcriptional corepressor L	0.973	0.984	0.720	0.0
357505277	775	WD-40 repeat-containing protein [Medicag	0.977	0.988	0.687	0.0
255554146	782	WD-repeat protein, putative [Ricinus com	0.991	0.993	0.688	0.0
224057571	773	predicted protein [Populus trichocarpa]	0.979	0.993	0.659	0.0

>gi|225465449|ref|XP_002266172.1| PREDICTED: transcriptional corepressor LEUNIG [Vitis vinifera] gi|297744346|emb|CBI37316.3| unnamed protein product [Vitis vinifera]

 Score = 1208 bits (3125), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 598/788 (75%), Positives = 679/788 (86%), Gaps = 13/788 (1%)

Query: 1   MAQGNWEADKMLDVYIHDYFLKRKLHASAKAFMTEGKVATDPVAIDAPGGFLFEWWSVFW 60
           MAQ NWEADKMLDVYIHDY LKRKLHASAKAFMTEGKVATDPVAIDAPGGFLFEWWSVFW
Sbjct: 1   MAQSNWEADKMLDVYIHDYLLKRKLHASAKAFMTEGKVATDPVAIDAPGGFLFEWWSVFW 60

Query: 61  DIFISRTNDKHSENAAAYIETQQIKTREQQQLQMQQLQFMQ---HRNAQLQRRDPNHPSL 117
           DIFI+RTNDKHSE AAAYIE QQ+K REQQQ Q  Q+Q +Q   HR AQLQRRDPNHP L
Sbjct: 61  DIFIARTNDKHSEAAAAYIEAQQMKAREQQQQQQLQMQQLQFMQHRTAQLQRRDPNHPPL 120

Query: 118 GGSVSALNSEGMMGQPSASVLAMKMYEERTKHPHSMDLDTSPALMDANKMALLKATTNPQ 177
           GGS++A+NSEGMMGQ SASVLAMKMYEER KHPHSMD +TSPAL+DAN+MALLK+ TN Q
Sbjct: 121 GGSMNAINSEGMMGQSSASVLAMKMYEERMKHPHSMDSETSPALIDANRMALLKSATNHQ 180

Query: 178 GQLAQGSSGNISAAMQRIQGRTTLTSDIKSEANLGATQKSLPMDPSSMYGQAMFQPKSVL 237
            QL QG+SG++SAA+Q+IQ RT LT DIK E NLGATQKSLPMDPS +YG A+ Q KS L
Sbjct: 181 SQLVQGNSGSMSAALQQIQARTQLTPDIKGEVNLGATQKSLPMDPS-IYGPAILQSKSGL 239

Query: 238 GSSGLNQGVAGLPLKGWPLIGPDQLRPGLGMQVQKPNMQMHNQFLLASQQPQQVLAQGQP 297
           G +GLNQGV GLPLKGWPL G +QLRP LG+QVQKPN+   NQF+LASQQ QQVLA  Q 
Sbjct: 240 GGAGLNQGVTGLPLKGWPLTGIEQLRPSLGVQVQKPNIPTQNQFILASQQ-QQVLAHAQA 298

Query: 298 PNNLRNSTSYGDMDPRNFCQLTRGNMNVKDGQSTRNDGSICSPVQSSSPKMKVAQMQHSS 357
            +NL NS +YGDMDPR  C + RG++N KDGQS RNDGSICSPVQSSSPKMKVAQMQHSS
Sbjct: 299 QSNLGNSPNYGDMDPRRLCGIPRGSLNTKDGQSARNDGSICSPVQSSSPKMKVAQMQHSS 358

Query: 358 SQHQDQLQQQQPQQLPQGNRKRK-NSSSGAANSTGTGNTVGPSPNSPPSTHTPGDGITTP 416
           SQ  DQLQQQQ QQ    NRKRK +SSSG ANSTGTGNTVGPSPNSPPSTHTPGDG+T  
Sbjct: 359 SQQLDQLQQQQMQQ---NNRKRKQHSSSGPANSTGTGNTVGPSPNSPPSTHTPGDGMTMA 415

Query: 417 TSMQHVNNMHKTLMMNGSEGTGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRE 476
           +S+QHVN++ K+LMM G +GTG LAS+SNLL+D++ F D+GS+D+N+ES LSHDGGDGR+
Sbjct: 416 SSLQHVNSVPKSLMMYGPDGTGGLASSSNLLDDMEHFGDIGSLDDNVESFLSHDGGDGRD 475

Query: 477 LYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNM 536
           LYGT     E +K+ +KGFTF EVGC+R+ N KVTCCHFSSDGK LAS+GHD+K VLWNM
Sbjct: 476 LYGTT----ELKKESSKGFTFAEVGCLRASNGKVTCCHFSSDGKFLASAGHDKKAVLWNM 531

Query: 537 DTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIM 596
           DTLQ ESTPE+H+ V+TD+RFRPNS+QLATAS DKSVRLWDAA P +C  AYTGH S +M
Sbjct: 532 DTLQRESTPEEHQFVITDIRFRPNSTQLATASYDKSVRLWDAAKPTYCVNAYTGHGSHVM 591

Query: 597 SLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAASDKVV 656
           SLDFHPKKTDLFCF D++NEI+YW+I+PF CT + KGG  QVRFQPRIG LLAAA DKVV
Sbjct: 592 SLDFHPKKTDLFCFSDSNNEIRYWNISPFSCTRVFKGGNVQVRFQPRIGHLLAAAMDKVV 651

Query: 657 SIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELSSNGN 716
           SIFD+ETDRQ HSLQGH+E+VNY+ WD NG+++ASVS +LVKVWS+ASGECI ELSSNG+
Sbjct: 652 SIFDVETDRQIHSLQGHSEMVNYLSWDANGEFMASVSPDLVKVWSIASGECIHELSSNGS 711

Query: 717 QFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASH 776
           QFHSCVFHPSY TLLV+GGI SLELWNMAENK MT+ AHE+I++ALAQSPV GMVASASH
Sbjct: 712 QFHSCVFHPSYPTLLVIGGIRSLELWNMAENKCMTVPAHESIVAALAQSPVNGMVASASH 771

Query: 777 DSSVKLWK 784
           DSSVK+WK
Sbjct: 772 DSSVKIWK 779

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147838598|emb|CAN73936.1| hypothetical protein VITISV_026282 [Vitis vinifera]

 Score = 1196 bits (3095), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 591/785 (75%), Positives = 675/785 (85%), Gaps = 12/785 (1%)

Query: 1   MAQGNWEADKMLDVYIHDYFLKRKLHASAKAFMTEGKVATDPVAIDAPGGFLFEWWSVFW 60
           MAQ NWEADKMLDVYIHDY LKRKLHASAKAFMTEGKVATDPVAIDAPGGFLFEWWSVFW
Sbjct: 1   MAQSNWEADKMLDVYIHDYLLKRKLHASAKAFMTEGKVATDPVAIDAPGGFLFEWWSVFW 60

Query: 61  DIFISRTNDKHSENAAAYIETQQIKTREQQQLQMQQLQFMQHRNAQLQRRDPNHPSLGGS 120
           DIFI+RTNDKHSE AAAYIE ++ + ++Q Q+Q  Q    QHR AQLQRRDPNHP LGGS
Sbjct: 61  DIFIARTNDKHSEAAAAYIEAREQQQQQQLQMQQLQFM--QHRTAQLQRRDPNHPPLGGS 118

Query: 121 VSALNSEGMMGQPSASVLAMKMYEERTKHPHSMDLDTSPALMDANKMALLKATTNPQGQL 180
           ++A+NSEGMMGQ SASVLAMKMYEER KHPHSMD +TSPAL+DAN+MALLK+ TN Q QL
Sbjct: 119 MNAINSEGMMGQSSASVLAMKMYEERMKHPHSMDSETSPALIDANRMALLKSATNHQSQL 178

Query: 181 AQGSSGNISAAMQRIQGRTTLTSDIKSEANLGATQKSLPMDPSSMYGQAMFQPKSVLGSS 240
            QG+SG++SAA+Q+IQ RT LT DIK E NLGATQKSLPMDPS +YG A+ Q KS LG +
Sbjct: 179 VQGNSGSMSAALQQIQARTQLTPDIKGEVNLGATQKSLPMDPS-IYGPAILQSKSGLGGA 237

Query: 241 GLNQGVAGLPLKGWPLIGPDQLRPGLGMQVQKPNMQMHNQFLLASQQPQQVLAQGQPPNN 300
           GLNQGV GLPLKGWPL G +QLRP LG+QVQKPN+   NQF+LASQQ QQVLA  Q  +N
Sbjct: 238 GLNQGVTGLPLKGWPLTGIEQLRPSLGVQVQKPNIPTQNQFILASQQ-QQVLAHAQAQSN 296

Query: 301 LRNSTSYGDMDPRNFCQLTRGNMNVKDGQSTRNDGSICSPVQSSSPKMKVAQMQHSSSQH 360
           L NS +YGDMDPR  C + RG++N KDGQS RNDGSICSPVQSSSPKMKVAQMQHSSSQ 
Sbjct: 297 LGNSPNYGDMDPRRLCGIPRGSLNTKDGQSARNDGSICSPVQSSSPKMKVAQMQHSSSQQ 356

Query: 361 QDQLQQQQPQQLPQGNRKRK-NSSSGAANSTGTGNTVGPSPNSPPSTHTPGDGITTPTSM 419
            DQLQQQQ QQ    NRKRK +SSSG ANSTGTGNTVGPSPNSPPSTHTPGDG+T  +S+
Sbjct: 357 LDQLQQQQMQQ---NNRKRKQHSSSGPANSTGTGNTVGPSPNSPPSTHTPGDGMTMASSL 413

Query: 420 QHVNNMHKTLMMNGSEGTGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYG 479
           QHVN++ K+LMM G +GTG LAS+SNLL+D++ F D+GS+D+N+ES LSHDGGDGR+LYG
Sbjct: 414 QHVNSVPKSLMMYGPDGTGGLASSSNLLDDMEHFGDIGSLDDNVESFLSHDGGDGRDLYG 473

Query: 480 TLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTL 539
           T     E +K+ +KGFTF EVGC+R+ N KVTCCHFSSDGK LAS+GHD+K VLWNMDTL
Sbjct: 474 TT----ELKKESSKGFTFAEVGCLRASNGKVTCCHFSSDGKFLASAGHDKKAVLWNMDTL 529

Query: 540 QTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLD 599
           Q ESTPE+H+ V+TD+RFRPNS+QLATAS DKSVRLWDAA P +C  AYTGH S +MSLD
Sbjct: 530 QRESTPEEHQFVITDIRFRPNSTQLATASYDKSVRLWDAAKPTYCVNAYTGHGSHVMSLD 589

Query: 600 FHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIF 659
           FHPKKTDLFCF D++NEI+YW+I+PF CT + KGG  QVRFQPRIG LLAAA DKVVSIF
Sbjct: 590 FHPKKTDLFCFSDSNNEIRYWNISPFSCTRVFKGGNVQVRFQPRIGHLLAAAMDKVVSIF 649

Query: 660 DIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELSSNGNQFH 719
           D+ETDRQ HSLQGH+E+VNY+ WD NG+++ASVS +LVKVWS+ASGECI ELSSNG+QFH
Sbjct: 650 DVETDRQIHSLQGHSEMVNYLSWDANGEFMASVSPDLVKVWSIASGECIHELSSNGSQFH 709

Query: 720 SCVFHPSYSTLLVVGGISSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHDSS 779
           SCVFHPSY TLLV+GGI SLELWNMAENK MT+ AHE+I++ALAQSPV GMVASASHDSS
Sbjct: 710 SCVFHPSYPTLLVIGGIRSLELWNMAENKCMTVPAHESIVAALAQSPVNGMVASASHDSS 769

Query: 780 VKLWK 784
           VK+WK
Sbjct: 770 VKIWK 774

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065336|ref|XP_002301780.1| predicted protein [Populus trichocarpa] gi|222843506|gb|EEE81053.1| predicted protein [Populus trichocarpa]

 Score = 1173 bits (3035), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 595/785 (75%), Positives = 675/785 (85%), Gaps = 14/785 (1%)

Query: 3   QGNWEADKMLDVYIHDYFLKRKLHASAKAFMTEGKVATDPVAIDAPGGFLFEWWSVFWDI 62
           Q NWEADKMLDVYIHDY LKRKLH SAKAFM EGKVATDPVAIDAPGGFLFEWWSVFWDI
Sbjct: 4   QSNWEADKMLDVYIHDYLLKRKLHNSAKAFMAEGKVATDPVAIDAPGGFLFEWWSVFWDI 63

Query: 63  FISRTNDKHSENAAAYIETQQIKTREQQQLQMQQLQFMQHRNAQLQRRDPNHPSLGGSVS 122
           FI+RTN+KHS+ AAAYIE QQ KTREQQQ+Q+Q    MQ  NAQ+QRRDP+HP+L  S++
Sbjct: 64  FIARTNEKHSDAAAAYIEAQQSKTREQQQMQLQL---MQRHNAQMQRRDPSHPALSSSLN 120

Query: 123 ALNSEGMMGQPSASVLAMKMYEERTKHPHSMDLDTSPALMDANKMALLKATTNPQGQLAQ 182
           A+N EGMMGQPSASVLAMKMYEER KHPHSMD +TSPAL+DAN+++LLK+ T  QGQLAQ
Sbjct: 121 AMNPEGMMGQPSASVLAMKMYEERMKHPHSMDSETSPALIDANRLSLLKSPTVQQGQLAQ 180

Query: 183 GSSGNISAAMQRIQGRTTLTSDIKSEANLGATQKSLPMDPSSMYGQAMFQPKSVLGSSGL 242
           G+SGN+SA +Q+IQ RT L +DIKSE NLG TQKSLPMDPSS+YGQA+ Q KS LG +GL
Sbjct: 181 GNSGNMSA-LQQIQARTPLITDIKSEINLGPTQKSLPMDPSSIYGQAILQSKSGLGGAGL 239

Query: 243 NQGVAGLP-LKGWPLIGPDQLRPGLGMQVQKPNMQMHNQFLLASQQPQQVLAQGQPPNNL 301
           NQGV GLP LKGWPL G + LRP LG Q+QKPN+Q  NQFLLASQQ Q +       +NL
Sbjct: 240 NQGVTGLPPLKGWPLTGIEHLRPSLGGQMQKPNLQTQNQFLLASQQQQVLAQAQAQ-SNL 298

Query: 302 RNSTSYGDMDPRNFCQLTRGNMNVKDGQSTRNDGSICSPVQSSSPKMKVAQMQHSSSQHQ 361
            NS +YGD+DPR   QL R ++N KDGQSTRNDGSICSPVQSSSPKMK+ QMQH SSQ Q
Sbjct: 299 GNSANYGDLDPRRLSQLPRSSLNAKDGQSTRNDGSICSPVQSSSPKMKMTQMQHPSSQQQ 358

Query: 362 DQLQQQQPQQLPQGNRKRK-NSSSGAANSTGTGNTVGPSPNSPPSTHTPGDGITTPTSMQ 420
           DQLQQQQ     Q NRKRK +SSSG ANST TGNT GPSPNSPPSTHTPGDG+ T +S Q
Sbjct: 359 DQLQQQQ-----QTNRKRKQHSSSGPANSTCTGNTAGPSPNSPPSTHTPGDGMRTTSSFQ 413

Query: 421 HVNNMHKTLMMNGSEGTGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGT 480
           H  ++ K+LMM G EGTGSLAS+SN++ED+DRF D+ ++D++ME  L+ DG DGR+LYGT
Sbjct: 414 HAKSVPKSLMMYGPEGTGSLASSSNIMEDMDRFGDIAALDDSMEQFLAPDG-DGRDLYGT 472

Query: 481 LKHS-PEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTL 539
           +K S  E+QK+ +KGFTF EVGCIR+RNSKVTCCHFSSDGKLLAS+GHD+KVVLWNMD L
Sbjct: 473 VKQSLSENQKESSKGFTFGEVGCIRTRNSKVTCCHFSSDGKLLASAGHDKKVVLWNMDNL 532

Query: 540 QTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLD 599
           QTE+T E+HKSV+TDVRFRPNSSQLAT+SVDKSVRLWDA NP++C   YTGHSSPIMSLD
Sbjct: 533 QTENTTEEHKSVITDVRFRPNSSQLATSSVDKSVRLWDANNPSYCLHEYTGHSSPIMSLD 592

Query: 600 FHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIF 659
           FHPKKTDLFCF D DNEI+YW+INPF    ++KGG AQVRFQPR G LLAAAS+KVV+IF
Sbjct: 593 FHPKKTDLFCFSDYDNEIRYWNINPFTSVRVSKGGNAQVRFQPRDGHLLAAASEKVVTIF 652

Query: 660 DIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELSSNGNQFH 719
           D+ETDRQ HS QGH+E+VNYICWD+ GD LASVSQNLVK+WSMASG+CIQELSSNGNQFH
Sbjct: 653 DVETDRQIHSFQGHSEMVNYICWDSTGDILASVSQNLVKIWSMASGDCIQELSSNGNQFH 712

Query: 720 SCVFHPSYSTLLVVGGISSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHDSS 779
           SCVFHPSYSTLLV+GGISSLELWNMAENKSMTI  HENII+ALAQSPVTGMVASASHDS+
Sbjct: 713 SCVFHPSYSTLLVIGGISSLELWNMAENKSMTIPGHENIIAALAQSPVTGMVASASHDST 772

Query: 780 VKLWK 784
           VKLWK
Sbjct: 773 VKLWK 777

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560171|ref|XP_002521103.1| WD-repeat protein, putative [Ricinus communis] gi|223539672|gb|EEF41254.1| WD-repeat protein, putative [Ricinus communis]

 Score = 1167 bits (3019), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 602/786 (76%), Positives = 675/786 (85%), Gaps = 22/786 (2%)

Query: 1   MAQGNWEADKMLDVYIHDYFLKRKLHASAKAFMTEGKVATDPVAIDAPGGFLFEWWSVFW 60
           MAQ NWEADKMLDVYIHDY LKRKLH SAKAFMTEGKVATDPVAIDAPGGFLFEWWSVFW
Sbjct: 1   MAQNNWEADKMLDVYIHDYLLKRKLHNSAKAFMTEGKVATDPVAIDAPGGFLFEWWSVFW 60

Query: 61  DIFISRTNDKHSENAAAYIETQQIKTREQQQLQMQQLQFMQ-HRNAQLQRRDPNHPSLGG 119
           DIFI+RTN+KHSE AAAYIE QQ+K REQQQ    Q   +  HRNA LQRRDP+HP+L G
Sbjct: 61  DIFIARTNEKHSEAAAAYIEAQQLKAREQQQQLQMQQLQLMQHRNAHLQRRDPSHPALAG 120

Query: 120 SVSALNSEGMMGQPSASVLAMKMYEERTKHPHSMDLDTSPALMDANKMALLKATTNPQGQ 179
           S++A+NSEGMMGQPSASVLAMKMYEER KHPHSMD +TSPAL+D N++AL K+ T  QGQ
Sbjct: 121 SMNAMNSEGMMGQPSASVLAMKMYEERIKHPHSMDSETSPALIDPNRVALFKSATGHQGQ 180

Query: 180 LAQGSSGNISAAMQRIQGRTTLTSDIKSEANLGATQKSLPMDPSSMYGQAMFQPKSVLGS 239
           L QG+SGN+SAA+Q+IQ R+ LT+DIKS+ NL +TQKSLPMDPS +YGQA+ Q KS L  
Sbjct: 181 LVQGNSGNMSAALQQIQARSPLTTDIKSDVNLASTQKSLPMDPS-IYGQAILQSKSGLAG 239

Query: 240 SGLNQGVAGLPLKGWPLIGPDQLRPGLGMQVQKPNMQMHNQFLLASQQPQQVLAQGQPPN 299
           +GLNQGV GLPLKGWPL G DQLRPGLG+Q+QKPNM   NQFLLASQQ Q +       +
Sbjct: 240 AGLNQGVTGLPLKGWPLTGIDQLRPGLGVQMQKPNMPTQNQFLLASQQQQVLAQAQAH-S 298

Query: 300 NLRNSTSYGDMDPRNFCQLTRGNMNVKDGQSTRNDGSICSPVQSSSPKMKVAQMQHSSSQ 359
           NL NS++YGDMDPR   QL RGN+N KDGQS RNDGSICSPVQSSSPKMK+AQMQHSSSQ
Sbjct: 299 NLGNSSNYGDMDPRRSNQLPRGNLNTKDGQSARNDGSICSPVQSSSPKMKMAQMQHSSSQ 358

Query: 360 HQDQLQQQQPQQLPQGNRKRKNSSSGAANSTGTGNTVGPSPNSPPSTHTPGDGITTPTSM 419
            QDQLQQQQ  Q     +++++SSSG ANSTGTGNTVGPSP+SPPSTHTPGDGITT +SM
Sbjct: 359 QQDQLQQQQQLQQNNNRKRKQHSSSGPANSTGTGNTVGPSPSSPPSTHTPGDGITTASSM 418

Query: 420 QHVNNMHKTLMMNGSEGTGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYG 479
           QHVN+  K LMM G EGTG LAS+S++L+D+DRF D+ S+D+NME  LSHDGGDGR+LYG
Sbjct: 419 QHVNSASKGLMMYGPEGTGGLASSSSMLDDMDRFGDIASLDDNMEQFLSHDGGDGRDLYG 478

Query: 480 TLKH-SPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDT 538
           TLK  S +HQK+ TKGFTF EVGCIR+RNSKVTCCHFSSDGKLLAS+GHD+KVVLWNMDT
Sbjct: 479 TLKQSSSDHQKESTKGFTFGEVGCIRTRNSKVTCCHFSSDGKLLASAGHDKKVVLWNMDT 538

Query: 539 LQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSL 598
           L TE+TPEDHK V+TDVRFRPNSSQLATASVDK+VRLWDA NP++C QAYTGH +P+MSL
Sbjct: 539 LLTETTPEDHKLVITDVRFRPNSSQLATASVDKTVRLWDATNPSYCLQAYTGH-TPVMSL 597

Query: 599 DFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSI 658
           DFHPKKTDLFCF DNDNEI+Y++INPF CT ++KGGTAQVRFQPRIG LLAAASDK    
Sbjct: 598 DFHPKKTDLFCFSDNDNEIRYFNINPFSCTRVSKGGTAQVRFQPRIGHLLAAASDK---- 653

Query: 659 FDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELSSNGNQF 718
                        GH+E+VNYICWD NGD LASVSQNLVK+WS+ASGECIQELSSNGNQF
Sbjct: 654 -------------GHSEMVNYICWDANGDILASVSQNLVKIWSLASGECIQELSSNGNQF 700

Query: 719 HSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHDS 778
           HSCVFHPSYSTLLV+GGISSLELWNMAENKSMTI AHENIISALAQSPVTGMVASASHD+
Sbjct: 701 HSCVFHPSYSTLLVIGGISSLELWNMAENKSMTIPAHENIISALAQSPVTGMVASASHDN 760

Query: 779 SVKLWK 784
           SVKLWK
Sbjct: 761 SVKLWK 766

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|49523569|emb|CAF18246.1| STY-L protein [Antirrhinum majus]

 Score = 1110 bits (2871), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 561/787 (71%), Positives = 662/787 (84%), Gaps = 13/787 (1%)

Query: 1   MAQGNWEADKMLDVYIHDYFLKRKLHASAKAFMTEGKVATDPVAIDAPGGFLFEWWSVFW 60
           MAQ NWEADKMLDVYIHDY LKRKLH SAKAFMTEGKVATDPVAIDAPGGFLFEWWSVFW
Sbjct: 1   MAQSNWEADKMLDVYIHDYLLKRKLHNSAKAFMTEGKVATDPVAIDAPGGFLFEWWSVFW 60

Query: 61  DIFISRTNDKHSENAAAYIETQQIKTREQQQLQMQQLQFMQHRNAQLQ-RRDPNHPSLGG 119
           DIFI+RTNDKHSE AAAYIETQQIK REQQQ    Q   +  +      RRDPNHP LGG
Sbjct: 61  DIFIARTNDKHSEAAAAYIETQQIKAREQQQQMQMQQLQLLQQRNAQLQRRDPNHPPLGG 120

Query: 120 SVSALNSEGMMGQPSASVLAMKMYEERTKHPHSMDLDTSPALMDANKMALLKATTNPQGQ 179
            ++++NSEGM+GQPSASVLAMKMYEER KHPHSMD +TSP L+DAN+MALLK+ +N QGQ
Sbjct: 121 PMNSMNSEGMIGQPSASVLAMKMYEERMKHPHSMDSETSPGLIDANRMALLKSASNQQGQ 180

Query: 180 LAQGSSGNISAAMQRIQGRTTLTSDIKSEANLGATQKSLPMDPSSMYGQAMFQPKSVLGS 239
           L QG++G++SAA+Q++QGR  + +DIK E  LG+TQKSLPMDPSS+YGQA+ Q KS LG 
Sbjct: 181 LMQGNTGSMSAALQQMQGRPQMANDIKGEVGLGSTQKSLPMDPSSIYGQAILQSKSGLGG 240

Query: 240 SGLNQGVAGLPLKGWPLIGPDQLRPGLGMQVQKPNMQMHNQFLLASQQPQQVLAQGQPPN 299
           +GLNQGV GLPLKGWPL G DQLRP LG+QVQKPN+Q  NQFLLASQQ Q +    Q   
Sbjct: 241 AGLNQGVTGLPLKGWPLTGIDQLRPSLGLQVQKPNLQTQNQFLLASQQQQVLAQA-QAQG 299

Query: 300 NLRNSTSYGDMDPRNFCQLTRGNMNVKDGQSTRNDGSICSPVQSSSPKMKVAQMQHSSSQ 359
           +L NS +YG      +  L RGN N KDGQ  RNDGSICSPVQ++SPKMK+AQMQ +SSQ
Sbjct: 300 SLGNSPNYG------YGGLPRGNSNAKDGQPPRNDGSICSPVQANSPKMKMAQMQQASSQ 353

Query: 360 HQDQLQQQQPQQLPQGNRKRKNSSSGAANSTGTGNTVGPSPNSPPSTHTPGDGITTPTSM 419
            QDQLQQQQ Q      +++ +SSSG ANSTGTGNTVGPSP +P STHTPGDG+ T +S+
Sbjct: 354 QQDQLQQQQQQLQQNNRKRKTHSSSGPANSTGTGNTVGPSPGTPQSTHTPGDGMATASSL 413

Query: 420 QHVNNMHKTLMMNGSEGTGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYG 479
           QHVN++ K++MM G++  G +AS++N L+D++ F DVGS+++N+ES LSHD GDG  LYG
Sbjct: 414 QHVNSVSKSMMMYGADAAGGIASSTNQLDDLENFGDVGSLEDNVESFLSHD-GDG-NLYG 471

Query: 480 TLKHS-PEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDT 538
           +LK +  EH+ + +KGF+F EVGCIR+RN KVTCCHFSSDGKLLAS+GHD+K VLWNMDT
Sbjct: 472 SLKQTLTEHKTETSKGFSFGEVGCIRTRN-KVTCCHFSSDGKLLASAGHDKKAVLWNMDT 530

Query: 539 LQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSL 598
           LQTE+TPE+H+ ++TDVRFRPNS+QLATAS DKSVRLWDAANP++C  AYTGH+S +MSL
Sbjct: 531 LQTETTPEEHQYLITDVRFRPNSTQLATASFDKSVRLWDAANPSYCLNAYTGHASHVMSL 590

Query: 599 DFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK-GGTAQVRFQPRIGQLLAAASDKVVS 657
           DFHPKK DLFCFCD++NEI+YWSI+PF CT I+K GG+AQVRFQP  G LLAAASDKVVS
Sbjct: 591 DFHPKKNDLFCFCDSNNEIRYWSISPFACTRISKQGGSAQVRFQPITGHLLAAASDKVVS 650

Query: 658 IFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELSSNGNQ 717
           I+D+E DRQTHS QGH+ +VNY+CWD NGD LASVS++ +KVWS+ASGECI EL+SNGNQ
Sbjct: 651 IYDVENDRQTHSFQGHSGVVNYLCWDLNGDLLASVSEDSIKVWSLASGECIHELNSNGNQ 710

Query: 718 FHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHD 777
           FHSCVFHPSYS LLV+GG+ SLELWNM ENKSMT++AHENII+ALAQSP+TGMVASASHD
Sbjct: 711 FHSCVFHPSYSALLVIGGLRSLELWNMVENKSMTVSAHENIIAALAQSPLTGMVASASHD 770

Query: 778 SSVKLWK 784
           SSVKLWK
Sbjct: 771 SSVKLWK 777

Source: Antirrhinum majus

Species: Antirrhinum majus

Genus: Antirrhinum

Family: Plantaginaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357505281|ref|XP_003622929.1| Transcriptional corepressor LEUNIG [Medicago truncatula] gi|355497944|gb|AES79147.1| Transcriptional corepressor LEUNIG [Medicago truncatula]

 Score = 1097 bits (2838), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 559/785 (71%), Positives = 645/785 (82%), Gaps = 10/785 (1%)

Query: 2   AQGNWEADKMLDVYIHDYFLKRKLHASAKAFMTEGKVATDPVAIDAPGGFLFEWWSVFWD 61
           AQ NWEADKMLDVYIHDYFLKR+LH +AKAFM EGKV+TDPVAIDAPGGFLFEWWSVFWD
Sbjct: 8   AQSNWEADKMLDVYIHDYFLKRRLHNTAKAFMAEGKVSTDPVAIDAPGGFLFEWWSVFWD 67

Query: 62  IFISRTNDKHSENAAAYIETQQIKTREQQQLQMQQLQFMQHRNAQLQRRDPNHPSLGGSV 121
           IFISRTN+KHSE AA+YIETQQ K REQ Q+Q  QL   Q RNAQLQRRDPNHP LGGS+
Sbjct: 68  IFISRTNEKHSEAAASYIETQQTKAREQLQMQQLQLM--QQRNAQLQRRDPNHPGLGGSL 125

Query: 122 SALNSEGMMGQPSASVLAMKMYEERTKHPHSMDLDTSPALMDANKMALLKATTNPQGQLA 181
           + +NSEGM+GQP AS LAMKMYEER KHPHSMD D SP L+DAN+MALLK+ T+ QGQL 
Sbjct: 126 NPMNSEGMLGQPPASALAMKMYEERMKHPHSMDSDVSPNLIDANRMALLKSATSHQGQLV 185

Query: 182 QGSSGNISAAMQRIQGRTTLTSDIKSEANLGATQKSLPMDPSSMYGQAMFQPKSVLGSSG 241
            G+SGN+SA +Q++Q R+ L +DIK E N+G + K+ PMD SS+Y Q++ Q KS LGS+G
Sbjct: 186 HGNSGNMSAVLQQMQARSALNNDIKGEVNIGGSPKNFPMD-SSVYRQSILQSKSGLGSAG 244

Query: 242 LNQGVAGLPLKGWPLIGPDQLRPGLGMQVQKPNMQMHNQFLLASQQPQQVLAQGQPPNNL 301
           LNQGV  LPLKGWPL G DQLRPGLG+QV KPN+   NQ+LLASQQ Q +       N+L
Sbjct: 245 LNQGVTSLPLKGWPLTGIDQLRPGLGVQVPKPNLSTQNQYLLASQQQQVLAQAQAQQNSL 304

Query: 302 RNSTSYGDMDPRNFCQLTRGNMNVKDGQSTRNDGSICSPVQSSSPKMKVAQMQHSSSQHQ 361
            NS +YGDMDPR    L RG++N KDGQS RNDGSI S +QS SPKMK+AQ Q S SQ Q
Sbjct: 305 GNS-NYGDMDPRRLSGLPRGSLNAKDGQSNRNDGSISSQMQSGSPKMKMAQSQQSLSQQQ 363

Query: 362 DQLQQQQPQQLPQGNRKRKN-SSSGAANSTGTGNTVGPSPNSPPSTHTPGDGITTPTSMQ 420
           +QLQQ Q QQ    NRKRK  SSSG ANSTGTGNT GPSPNSP STHTPGD + T +SMQ
Sbjct: 364 EQLQQHQLQQS---NRKRKQASSSGPANSTGTGNTAGPSPNSPSSTHTPGDALNTASSMQ 420

Query: 421 HVNNMHKTLMMNGSEGTGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGT 480
           HVNN+ K++MM G+E TG L S+SNLL+DIDRF DVG++D+N+ES LS+D GDG  LYGT
Sbjct: 421 HVNNVQKSMMMYGTEATGGLGSSSNLLDDIDRFGDVGALDDNVESFLSNDAGDGGNLYGT 480

Query: 481 LKHSP-EHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTL 539
           +K SP E QK+ +K FTF E  CIR+RN  VT CHFSSDGKLLAS+G D+KV LWNMD+L
Sbjct: 481 IKQSPAEEQKESSKTFTFAEFSCIRTRN-IVTSCHFSSDGKLLASAGEDKKVTLWNMDSL 539

Query: 540 QTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLD 599
           +TE TPE+HK V+TDVRFRPNSSQLATAS DKSVRLWDAANP +C Q Y+GHSS IMSLD
Sbjct: 540 RTEHTPEEHKLVITDVRFRPNSSQLATASCDKSVRLWDAANPTYCVQEYSGHSSAIMSLD 599

Query: 600 FHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIF 659
           FHPKKTD FCFCD++NEI+Y++I    CT ++KGG A+VRFQP  GQLLAAASDKVVSIF
Sbjct: 600 FHPKKTDFFCFCDSENEIRYYNITSSSCTRVSKGGNAKVRFQPGSGQLLAAASDKVVSIF 659

Query: 660 DIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELSSNGNQFH 719
           D+ETDRQ +SLQGH E VN ICWDT GD LAS+S NLVK+W++ SGEC+QEL+S GNQF+
Sbjct: 660 DVETDRQIYSLQGHPEPVNNICWDTTGDMLASISPNLVKIWNLTSGECVQELNSTGNQFY 719

Query: 720 SCVFHPSYSTLLVVGGISSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHDSS 779
           S +FHPSY+TLLVVGGISSLELWNMAENKSMTI AHEN+ISALA+   TGMVASAS D+S
Sbjct: 720 SGLFHPSYATLLVVGGISSLELWNMAENKSMTIPAHENVISALAECAATGMVASASRDNS 779

Query: 780 VKLWK 784
           VKLWK
Sbjct: 780 VKLWK 784

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567862|ref|XP_003552134.1| PREDICTED: transcriptional corepressor LEUNIG-like [Glycine max]

 Score = 1091 bits (2821), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 566/786 (72%), Positives = 643/786 (81%), Gaps = 23/786 (2%)

Query: 3   QGNWEADKMLDVYIHDYFLKRKLHASAKAFMTEGKVATDPVAIDAPGGFLFEWWSVFWDI 62
           Q NWEADKMLDVYI+DY +KRKLHA+AKAF+TEGKV+TDPVAIDAPGGFL+EWWSVFWDI
Sbjct: 9   QSNWEADKMLDVYIYDYLMKRKLHAAAKAFVTEGKVSTDPVAIDAPGGFLYEWWSVFWDI 68

Query: 63  FISRTNDKHSENAAAYIETQQIKTREQQQLQMQQLQFMQHRNAQLQRRDPNHPSLGGSVS 122
           FISRTN+KHSE AAAYIETQQ K REQQ    Q    MQ R+AQLQRRDPNHPSLGGS++
Sbjct: 69  FISRTNEKHSEAAAAYIETQQTKAREQQLQMQQLQL-MQQRSAQLQRRDPNHPSLGGSIN 127

Query: 123 ALNSEGMMGQPSASVLAMKMYEERTKHPHSMDLDTSPALMDANKMALLKATTNPQGQLAQ 182
           A+NSEGM+GQP ASVLAMKMYEER KHPHSMD + SP L+D N+MALLK+  + QGQL  
Sbjct: 128 AMNSEGMLGQPPASVLAMKMYEERMKHPHSMDSEASPTLIDPNRMALLKSAASHQGQLVH 187

Query: 183 GSSGNISAAMQRIQGRTTLTSDIKSEANLGATQKSLPMDPSSMYGQAMFQPKSVLGSSGL 242
           G+SGN+S A+Q  QGR  LT+DIK E NLGAT KSLPMD +S+Y QA+   KS LGS+GL
Sbjct: 188 GNSGNMSTALQ--QGRAPLTTDIKGEVNLGATPKSLPMD-TSVYRQAILHSKSGLGSAGL 244

Query: 243 NQGVAGLPLKGWPLI-GPDQLRPGLGMQVQKPNMQMHNQFLLASQQPQQVLAQGQPPNNL 301
           NQGV GLPLKGWPL  G DQLRP LG+Q+ KPN+   NQF+LASQQ Q +       NNL
Sbjct: 245 NQGVTGLPLKGWPLASGIDQLRPNLGVQIPKPNLTAQNQFVLASQQQQVLAQAQAQ-NNL 303

Query: 302 RNSTSYGDMDPRNFCQLTRGNMNVKDGQSTRNDGSICSPVQSSSPK-MKVAQMQHSSSQH 360
            NS +YGDMDPR    L RG+++ KDGQSTRNDGSICS +QS SPK MK+AQ QHS SQ 
Sbjct: 304 GNS-NYGDMDPRRLSGLPRGSLSAKDGQSTRNDGSICSQMQSDSPKQMKIAQSQHSLSQQ 362

Query: 361 QDQLQQQQPQQLPQGNRKRKNSSSGAANSTGTGNTVGPSPNSPPSTHTPGDGITTPTSMQ 420
           Q+QLQQQ        NRKRK   SGAANSTGTGNT  PSP S PSTHTPGDG+ T +SMQ
Sbjct: 363 QEQLQQQS-------NRKRK---SGAANSTGTGNTAAPSPTSSPSTHTPGDGLNTASSMQ 412

Query: 421 HVNNMHKTLMMNGSEGTGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGT 480
           HV    K++MM G+E TG LAS+SNLL+D+DRF DV ++D+N+ES LS+DGGDG  LYGT
Sbjct: 413 HV---QKSMMMYGTEATGGLASSSNLLDDMDRFGDVDALDDNVESFLSNDGGDGGNLYGT 469

Query: 481 LKHSP-EHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTL 539
           +K SP E QK+ +KGFTF EVGC R+RNSKVTCCHFSSDGK LAS+G D KV +WNMDTL
Sbjct: 470 VKQSPAEQQKESSKGFTFAEVGCRRTRNSKVTCCHFSSDGKWLASAGDDMKVDIWNMDTL 529

Query: 540 QTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLD 599
           +TESTP +HKSV+TDVRFRPNSSQLATAS DKSVRLWD  NP+ C Q Y+GHSS IMSLD
Sbjct: 530 ETESTPAEHKSVITDVRFRPNSSQLATASTDKSVRLWDTTNPSRCLQEYSGHSSAIMSLD 589

Query: 600 FHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIF 659
           FHPKKT+LFCFCD +NEI+YW+IN   CT +TKG +AQVRFQPR+G+ LAAASDK VSIF
Sbjct: 590 FHPKKTELFCFCDGENEIRYWNINSSTCTRVTKGVSAQVRFQPRLGRYLAAASDKGVSIF 649

Query: 660 DIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMAS-GECIQELSSNGNQF 718
           D+E+D Q ++LQGH E V+YICWD NGD LASVS NLVKVWS+ S GECI E SS GNQF
Sbjct: 650 DVESDTQIYTLQGHPEPVSYICWDGNGDALASVSSNLVKVWSLTSGGECIHEFSSPGNQF 709

Query: 719 HSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHDS 778
           HSCVFHPSYSTLLVVGGISSLELWNM ENKSMTI  HEN+ISALAQS VTGMVASASHD+
Sbjct: 710 HSCVFHPSYSTLLVVGGISSLELWNMTENKSMTITTHENVISALAQSSVTGMVASASHDN 769

Query: 779 SVKLWK 784
            VKLWK
Sbjct: 770 YVKLWK 775

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357505277|ref|XP_003622927.1| WD-40 repeat-containing protein [Medicago truncatula] gi|355497942|gb|AES79145.1| WD-40 repeat-containing protein [Medicago truncatula]

 Score = 1043 bits (2697), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 540/785 (68%), Positives = 628/785 (80%), Gaps = 19/785 (2%)

Query: 2   AQGNWEADKMLDVYIHDYFLKRKLHASAKAFMTEGKVATDPVAIDAPGGFLFEWWSVFWD 61
           AQ NWEADK+LDVYIHDYFLKR+LH +AKAFM EGKV+TDPVAIDAPGGFLFEWWSVFWD
Sbjct: 8   AQSNWEADKVLDVYIHDYFLKRRLHNTAKAFMAEGKVSTDPVAIDAPGGFLFEWWSVFWD 67

Query: 62  IFISRTNDKHSENAAAYIETQQIKTREQQQLQMQQLQFMQHRNAQLQRRDPNHPSLGGSV 121
           IFISRTN+KHSE AA+YIETQQ K REQ Q+Q  Q    Q RNAQLQRRDPNHP LGGS+
Sbjct: 68  IFISRTNEKHSEAAASYIETQQTKVREQPQIQQLQRM--QQRNAQLQRRDPNHPGLGGSL 125

Query: 122 SALNSEGMMGQPSASVLAMKMYEERTKHPHSMDLDTSPALMDANKMALLKATTNPQGQLA 181
           + +NSEGM+GQP A  LAMKMYE R KHPHS+D         AN+MALLK+ T+ QGQL 
Sbjct: 126 NPMNSEGMLGQPPAGQLAMKMYEARMKHPHSID---------ANRMALLKSATSHQGQLV 176

Query: 182 QGSSGNISAAMQRIQGRTTLTSDIKSEANLGATQKSLPMDPSSMYGQAMFQPKSVLGSSG 241
            G+SGN+SA +Q++Q R+ L + IK E  +GA+  + PMD SS+Y Q++ Q KS LG +G
Sbjct: 177 HGNSGNMSAVLQQMQARSALNNVIKREVKIGASPMNFPMD-SSVYRQSILQSKSGLGRAG 235

Query: 242 LNQGVAGLPLKGWPLIGPDQLRPGLGMQVQKPNMQMHNQFLLASQQPQQVLAQGQPPNNL 301
           LNQGV  LPLKGWPL G  QLRPGLG+QV KPN+   NQ+LLASQQ Q +       N+L
Sbjct: 236 LNQGVTCLPLKGWPLNGIGQLRPGLGVQVPKPNLTSQNQYLLASQQQQVLAQAQAQQNSL 295

Query: 302 RNSTSYGDMDPRNFCQLTRGNMNVKDGQSTRNDGSICSPVQSSSPKMKVAQMQHSSSQHQ 361
            NS +YGDMDPR    L RG++N KDGQS  NDGSI S +QS SPKMK+AQ Q S SQ Q
Sbjct: 296 GNS-NYGDMDPRRLSGLPRGSLNPKDGQSNWNDGSISSQMQSGSPKMKMAQTQQSLSQQQ 354

Query: 362 DQLQQQQPQQLPQGNRKRKN-SSSGAANSTGTGNTVGPSPNSPPSTHTPGDGITTPTSMQ 420
           +QLQQ Q QQ    NRKRK  SSSGAANSTGT NT GPSP SP STHTPGD + T +SM+
Sbjct: 355 EQLQQHQLQQS---NRKRKQASSSGAANSTGTRNTAGPSPYSPSSTHTPGDALNTASSME 411

Query: 421 HVNNMHKTLMMNGSEGTGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGT 480
           HVNN+ K++MM G+E TG L S+SNLL+DID F DVG++D+N+ES LS+D GDG  LYGT
Sbjct: 412 HVNNVQKSMMMYGTEATGGLRSSSNLLDDIDGFGDVGALDDNVESFLSNDAGDGGNLYGT 471

Query: 481 LKHSP-EHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTL 539
           +K SP E QK  +K +TF E  CIR+RN  VT CHFSSDGKLLAS+G D+KV LWNMD+L
Sbjct: 472 IKQSPAEEQKDSSKTYTFAEFSCIRTRN-IVTSCHFSSDGKLLASAGEDKKVTLWNMDSL 530

Query: 540 QTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLD 599
           +TE TPE+HK V+TDVRFRPNSSQLATAS DKSVRLWDA NP +C Q Y+GHSS IMSLD
Sbjct: 531 RTEHTPEEHKLVITDVRFRPNSSQLATASCDKSVRLWDAVNPTYCVQEYSGHSSAIMSLD 590

Query: 600 FHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIF 659
           FHPKKTD+FCFCDN+NEI+Y++I    CT ++KGG A+VRFQP  GQLLAAASDKVVSIF
Sbjct: 591 FHPKKTDIFCFCDNENEIRYYNITSSSCTRVSKGGNAKVRFQPGSGQLLAAASDKVVSIF 650

Query: 660 DIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELSSNGNQFH 719
           D+ETDRQ +SLQGH E VN ICWDT GD LAS+S NLVK+W++ SGEC+QEL+S GNQF+
Sbjct: 651 DVETDRQIYSLQGHPEPVNNICWDTTGDMLASISPNLVKIWNLTSGECVQELNSTGNQFY 710

Query: 720 SCVFHPSYSTLLVVGGISSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHDSS 779
           S +FHPSY+TLLVVGGISSLELWNMAENKSMTI AHEN+ISALA+   TGMVASAS D+S
Sbjct: 711 SGLFHPSYATLLVVGGISSLELWNMAENKSMTIPAHENVISALAECAATGMVASASRDNS 770

Query: 780 VKLWK 784
           VKLWK
Sbjct: 771 VKLWK 775

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255554146|ref|XP_002518113.1| WD-repeat protein, putative [Ricinus communis] gi|223542709|gb|EEF44246.1| WD-repeat protein, putative [Ricinus communis]

 Score = 1033 bits (2672), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 543/789 (68%), Positives = 640/789 (81%), Gaps = 12/789 (1%)

Query: 1   MAQGNWEADKMLDVYIHDYFLKRKLHASAKAFMTEGKVATDPVAIDAPGGFLFEWWSVFW 60
           MAQ NWEADKMLDVYI+DY +K+KLHA+AK+FMTEGKVA DPVAIDAPGGFLFEWWSVFW
Sbjct: 1   MAQSNWEADKMLDVYIYDYLVKKKLHATAKSFMTEGKVAPDPVAIDAPGGFLFEWWSVFW 60

Query: 61  DIFISRTNDKHSENAAAYIETQQIKTREQQQLQMQQLQFMQHRNAQLQRRDPNHPSLGGS 120
           DIFI+RTN+KHSE AAAYIE QQ K +EQQQLQ+QQLQ M  R AQLQR  PN+P+LGG 
Sbjct: 61  DIFIARTNEKHSEAAAAYIEAQQFKAKEQQQLQIQQLQLM--RQAQLQRGGPNNPTLGGP 118

Query: 121 VSALNSEGMMGQPSASVLAMKMYEERTKHPHSMDLDTSPALMDANKMALLKATTNPQGQL 180
           V+A+ SEGM+GQ +AS +A KMYEER KH + MD +TS  L+D+ +M LLK  TN  GQL
Sbjct: 119 VNAIGSEGMLGQSNASAMAAKMYEERMKHSNPMDSETSQPLLDS-RMPLLKQATNHPGQL 177

Query: 181 AQGSSGNISAAMQRIQGRTTLTSDIKSEANLGATQKSLPMDPSSMYGQAMFQPKSVLGSS 240
            QG+SG+ISAA+Q+IQ RT  T+DIKSE NLGA Q+SLPMDPSS+YGQ + Q K  +G++
Sbjct: 178 VQGNSGSISAALQQIQARTQQTTDIKSEVNLGAAQRSLPMDPSSIYGQGIMQSKPGIGNA 237

Query: 241 GLNQGVAGLPLKGWPLIGPDQLRPGLGMQVQKPNMQMHNQFLLASQQPQQVLAQGQPPNN 300
           GLN GV+ LPLKGWPL   DQ+RP LG QVQ+P +   NQF L  QQ QQ+LAQ Q   N
Sbjct: 238 GLNPGVSSLPLKGWPLTVIDQIRPSLGAQVQRPLLHGANQFQLLPQQQQQLLAQVQAQGN 297

Query: 301 LRNSTSYGDMDPRNFCQLTRGNMNVKDGQSTRNDGSICSPVQSSSPK-MKVAQMQHSSSQ 359
           L NS  YGDMDPR F  L RG +  KDGQ T NDGSI SP+QS+S K M V QMQ SSSQ
Sbjct: 298 LANSPIYGDMDPRKFRGLPRGTLQAKDGQPTANDGSIGSPMQSTSSKQMNVPQMQQSSSQ 357

Query: 360 HQDQLQQQQPQQLPQGNRKRKN-SSSGAANSTGTGNTVGPSPNSP--PSTHTPGDGITTP 416
            QD +Q QQPQ     NRKRK  +SSG ANSTGTGNTVGPS + P  PSTHTPG+GI+T 
Sbjct: 358 QQDPMQSQQPQN----NRKRKGPTSSGPANSTGTGNTVGPSNSQPSTPSTHTPGEGISTA 413

Query: 417 TSMQHVNNMHKTLMMNGSEGTGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRE 476
            ++QHVN+M K +MM G++GTG+LAS++N LEDI+ F DVGS+D+N+ES LSHD GDGR+
Sbjct: 414 GNVQHVNSMPKGMMMYGTDGTGTLASSTNQLEDIEHFGDVGSLDDNVESFLSHDDGDGRD 473

Query: 477 LYGTLKHSP-EHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWN 535
           L+ TLK +P EH  + +KGF+F EVG IR  N KV CCHFS+DGKLLAS+GHD+KVVLWN
Sbjct: 474 LFSTLKRNPSEHAAEASKGFSFNEVGSIRKSNGKVVCCHFSTDGKLLASAGHDKKVVLWN 533

Query: 536 MDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPI 595
           M+TLQTE TPE+H  ++TDVRFRP+++QLAT+S D SVRLWDAA P +  Q YTGH+S +
Sbjct: 534 METLQTECTPEEHNHIITDVRFRPSTTQLATSSFDTSVRLWDAAEPRYSLQTYTGHTSHV 593

Query: 596 MSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAASDKV 655
           MSLDFHPKK DLFC CD +NEI++W+IN + CT I+KGG AQVRFQPRIG LLAAA++ V
Sbjct: 594 MSLDFHPKKNDLFCSCDGNNEIRFWNINQYSCTRISKGGIAQVRFQPRIGHLLAAAAENV 653

Query: 656 VSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELSSNG 715
           VSIFD+ETDRQTHSLQGH+  V+ +CWD NGDYLASVSQ  V+VWS+ASGECI ELSS+G
Sbjct: 654 VSIFDVETDRQTHSLQGHSTEVHSVCWDVNGDYLASVSQESVRVWSLASGECIHELSSSG 713

Query: 716 NQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASAS 775
           N+FHSCVFHPSYSTLLV+GG  SLELWNMAENK MTI AHE +ISALAQSPVTGMVASAS
Sbjct: 714 NKFHSCVFHPSYSTLLVIGGYQSLELWNMAENKCMTIPAHECVISALAQSPVTGMVASAS 773

Query: 776 HDSSVKLWK 784
           HD  VK+WK
Sbjct: 774 HDKCVKIWK 782

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057571|ref|XP_002299273.1| predicted protein [Populus trichocarpa] gi|222846531|gb|EEE84078.1| predicted protein [Populus trichocarpa]

 Score = 1009 bits (2608), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 520/789 (65%), Positives = 622/789 (78%), Gaps = 21/789 (2%)

Query: 1   MAQGNWEADKMLDVYIHDYFLKRKLHASAKAFMTEGKVATDPVAIDAPGGFLFEWWSVFW 60
           MAQ NWEADKMLDVYI+DY +K+KLHA+AK+FMTEGKV  DPVAIDAPGGFLFEWWSVFW
Sbjct: 1   MAQSNWEADKMLDVYIYDYLVKKKLHATAKSFMTEGKVHPDPVAIDAPGGFLFEWWSVFW 60

Query: 61  DIFISRTNDKHSENAAAYIETQQIKTREQQQLQMQQLQFMQHRNAQLQRRDPNHPSLGGS 120
           DIFI+RTN+KHSE AAAY+E QQ KT+E QQLQ+        R AQLQR  PN+P +GG 
Sbjct: 61  DIFIARTNEKHSETAAAYLEAQQSKTKEHQQLQLM-------RQAQLQRGGPNNPIVGGP 113

Query: 121 VSALNSEGMMGQPSASVLAMKMYEERTKHPHSMDLDTSPALMDANKMALLKATTNPQGQL 180
           V+++ SEGM+GQ +AS LA KMYEER KH + M+ +TS   +DA +MALLK+TTN  GQL
Sbjct: 114 VNSIGSEGMLGQSNASALAAKMYEERMKHSNQMESETSQPHLDA-RMALLKSTTNHPGQL 172

Query: 181 AQGSSGNISAAMQRIQGRTTLTSDIKSEANLGATQKSLPMDPSSMYGQAMFQPKSVLGSS 240
            QG+ GN++AA+Q+IQ RT  T+D+K E +LGA Q+SLPMDPS++YGQ + Q K  +G++
Sbjct: 173 VQGNPGNVTAALQQIQARTQQTADVKPEVSLGAAQRSLPMDPSTIYGQGIMQSKPGIGNA 232

Query: 241 GLNQGVAGLPLKGWPLIGPDQLRPGLGMQVQKPNMQM-HNQFLLASQQPQQVLAQGQPPN 299
           GLN GV GLPL+GWPL G +Q+RP LG QVQ+P +       LL  QQ QQ+LAQ Q   
Sbjct: 233 GLNPGVNGLPLRGWPLTGLEQIRPSLGAQVQRPLLHGPSQFQLLPQQQQQQLLAQVQAQG 292

Query: 300 NLRNSTSYGDMDPRNFCQLTRGNMNVKDGQSTRNDGSICSPVQSSSPKMKVAQMQHSSSQ 359
           NL  S  YGDMD R F  L RG +N KDGQ   NDGSI SP+ S+S KM + QMQ SSSQ
Sbjct: 293 NLAASPMYGDMDSRKFRGLPRGALNSKDGQPNVNDGSIGSPMHSTSSKMNLPQMQQSSSQ 352

Query: 360 HQDQLQQQQPQQLPQGNRKRKN-SSSGAANSTGTGNTVGPSPNSP--PSTHTPGDGITTP 416
            QD L  QQ       NRKRK  SSSG ANSTGTGNTVGPS + P  PSTHTPGDGI T 
Sbjct: 353 -QDPLHPQQ------NNRKRKGPSSSGPANSTGTGNTVGPSNSQPSTPSTHTPGDGIATA 405

Query: 417 TSMQHVNNMHKTLMMNGSEGTGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRE 476
            ++QHVN+M K LM +G + TG+LAS++N LEDI+ FADVGS+D+N+ES LSHD GDGR+
Sbjct: 406 GNLQHVNSMPKGLMYSG-DATGALASSTNPLEDIEHFADVGSLDDNVESFLSHDDGDGRD 464

Query: 477 LYGTLK-HSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWN 535
           L+GTLK +S EH  + +KGF F EV  IR  N KV CCHFS+DGKLLAS+GHD+KVVLWN
Sbjct: 465 LFGTLKRNSSEHAAEASKGFNFSEVSSIRKSNGKVVCCHFSTDGKLLASAGHDKKVVLWN 524

Query: 536 MDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPI 595
           M+TLQTE T E+H  ++TDVRFRPNS+QLAT+S D SVRLWDAA P +  Q +TGH+S +
Sbjct: 525 METLQTECTQEEHTHIITDVRFRPNSTQLATSSFDTSVRLWDAAEPRYSLQTFTGHTSHV 584

Query: 596 MSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAASDKV 655
           +SLDFHPKK DLFC CD +NEI++W+IN + CT I+KGGT QVRFQPRIGQLLAAASD V
Sbjct: 585 VSLDFHPKKNDLFCSCDGNNEIRFWNINQYPCTRISKGGTTQVRFQPRIGQLLAAASDNV 644

Query: 656 VSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELSSNG 715
           VSIFDIE+DRQTHSLQGH+  V+ +CWD NG+YLASVSQ  V+VWS+A+G+CI ELSS+G
Sbjct: 645 VSIFDIESDRQTHSLQGHSTEVHSVCWDVNGEYLASVSQESVRVWSLATGDCIHELSSSG 704

Query: 716 NQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASAS 775
           N+FHSCVFHPSY+TLLV+GG  SLELWNMAENK MT+AAHE +ISALAQS  TGMVASAS
Sbjct: 705 NKFHSCVFHPSYATLLVIGGYQSLELWNMAENKCMTVAAHECVISALAQSQATGMVASAS 764

Query: 776 HDSSVKLWK 784
           HD  VK+WK
Sbjct: 765 HDKCVKIWK 773

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	784
ASPGD|ASPL0000032162	1364	AN8468 [Emericella nidulans (t	0.339	0.195	0.309	1.5e-25
ASPGD|ASPL0000006214	434	AN6385 [Emericella nidulans (t	0.341	0.617	0.290	6.2e-25
RGD|1565004	324	Poc1a "POC1 centriolar protein	0.350	0.848	0.289	2.1e-24
DICTYBASE|DDB_G0287273	335	wdr5 "WD40 repeat-containing p	0.354	0.829	0.253	2.7e-24
UNIPROTKB|F1SIZ2	367	POC1A "Uncharacterized protein	0.350	0.749	0.293	4.5e-24
UNIPROTKB|G3N3E5	308	WDR5 "WD repeat-containing pro	0.344	0.876	0.259	1.2e-23
UNIPROTKB|Q2KIG2	334	WDR5 "WD repeat-containing pro	0.344	0.808	0.259	1.2e-23
UNIPROTKB|P61964	334	WDR5 "WD repeat-containing pro	0.344	0.808	0.259	1.2e-23
UNIPROTKB|F1S034	334	WDR5 "Uncharacterized protein"	0.344	0.808	0.259	1.2e-23
MGI|MGI:2155884	334	Wdr5 "WD repeat domain 5" [Mus	0.344	0.808	0.259	1.2e-23

ASPGD|ASPL0000032162 AN8468 [Emericella nidulans (taxid:162425)]

 Score = 326 (119.8 bits), Expect = 1.5e-25, P = 1.5e-25
 Identities = 85/275 (30%), Positives = 132/275 (48%)

Query:   515 FSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVR 574
             FS DGK L S  +D  V +W+  T +   T + H   V  + F P+   LA+ S D ++ 
Sbjct:   758 FSPDGKQLVSGSYDDTVKIWDPATGELLQTLDGHSGTVESLAFSPDGKLLASGSYDNTID 817

Query:   575 LWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGG 634
             LWD+A      Q + GH   I S+ F P   +L    D D+ I+ W +            
Sbjct:   818 LWDSATGELL-QTFEGHPHSIWSVAFAPDGKELASASD-DSTIKIWDLATGELQQTLDSH 875

Query:   635 TAQVR---FQPRIGQLLAAAS-DKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLA 690
             +  VR   F P  G+LLA++S D  + +++  T     SL+G +  V  + +  +G  LA
Sbjct:   876 SQSVRSVAFSPD-GKLLASSSLDSTIKVWNPATGELQQSLEGRSGWVKSVAFSPDGKKLA 934

Query:   691 SVSQ-NLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENK- 748
             S S+ N VK+W+ A+GE +Q L  +     S  F P    L      ++++LWN    + 
Sbjct:   935 SGSEKNTVKLWNPATGELLQTLEGHSQSVRSVAFSPDGKQLASSSSDTTIKLWNSTTGEL 994

Query:   749 SMTIAAHENIISALAQSPVTGMVASASHDSSVKLW 783
               T   H+  I A+A SP    + S S D+++KLW
Sbjct:   995 QQTFKGHDLWIRAVAFSPDGKHLVSGSDDNTIKLW 1029

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

ASPGD|ASPL0000006214 AN6385 [Emericella nidulans (taxid:162425)]

 Score = 305 (112.4 bits), Expect = 6.2e-25, P = 6.2e-25
 Identities = 85/293 (29%), Positives = 142/293 (48%)

Query:   499 EVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFR 558
             E+  +   +  +    FS DG+LLAS  +D  + LW+  +   + T E H S V  V F 
Sbjct:    33 ELQTLEGHSDWIETVTFSPDGRLLASGSNDTTIKLWDPASGGLKQTLEGHSSSVQSVAFS 92

Query:   559 PNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQ 618
             PN   LA+ S D +++LW++A+ +       GHS  + S+ F P               Q
Sbjct:    93 PNGQLLASGSSDTTIKLWNSASDSL-KHTMEGHSDRVESVAFSPNG-------------Q 138

Query:   619 YWSINPFLCT--HITKGGT---AQVRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHSLQG 672
              W  NP + +  H  +G +     V F P  GQLLA+ S +K + ++D  T    H+L G
Sbjct:   139 LW--NPAIGSLKHTIEGHSDWVLSVAFSPD-GQLLASGSAEKTIKLWDSATCGLKHTLGG 195

Query:   673 HAELVNYICWDTNGDYLASVSQNL-VKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLL 731
             H+  V  + +  +G  LAS S +  +K+W   SG     L  + N+  S  F P+   L 
Sbjct:   196 HSNWVLPLVFSPDGRLLASGSNDATIKLWDPPSGSLKHTLEGHSNKIESLAFSPNGQLLA 255

Query:   732 VVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLW 783
                  ++++LW+ A      T+  H +++ ++  SP + ++ S S D+++KLW
Sbjct:   256 SGSSDATIKLWDTATGSFRHTLKGHSDMVLSVVFSPDSQLLESGSGDNTIKLW 308

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

RGD|1565004 Poc1a "POC1 centriolar protein homolog A (Chlamydomonas)" [Rattus norvegicus (taxid:10116)]

 Score = 288 (106.4 bits), Expect = 2.1e-24, P = 2.1e-24
 Identities = 84/290 (28%), Positives = 136/290 (46%)

Query:   504 RSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQ 563
             +     VTC  FS + K LAS   D  +++W+M           HK  VT V F P+   
Sbjct:    16 KGHRDAVTCVDFSLNTKHLASGSMDSTLMIWHMKPQSRAYRFTGHKDAVTCVNFSPSGHL 75

Query:   564 LATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSIN 623
             LA+ S DK+VR+W   N    S  +  H++ + S+ F      L     +D  ++ WS +
Sbjct:    76 LASGSRDKTVRIW-VPNVKGESTVFRAHTATVRSVHFC-SDGQLLVTASDDKTVKVWSTH 133

Query:   624 P--FLCT---HITKGGTAQVRFQPRIGQLLAAASD-KVVSIFDIETDRQ-THSLQGHAEL 676
                FL +   HI     A  +F P  G+L+ +ASD K V ++D +T R+  HS   H   
Sbjct:   134 RQRFLFSLTQHINWVRCA--KFSPD-GRLIVSASDDKTVKLWD-KTSRECVHSYCEHGGF 189

Query:   677 VNYICWDTNGDYLASVSQ-NLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGG 735
             V Y+ +  +G  +A+    N VKVW   +   +Q    +    ++  FHPS + L+    
Sbjct:   190 VTYVDFHPSGTCIAAAGMDNTVKVWDTRTHRLVQHYQLHSAAVNALSFHPSGNYLITASS 249

Query:   736 ISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLWK 784
              S+L++ ++ E + + T+  H+   + +A S      AS   D  V +WK
Sbjct:   250 DSTLKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGSDEQVMVWK 299

GO:0005737 "cytoplasm" evidence=ISO

GO:0005813 "centrosome" evidence=ISO

GO:0005814 "centriole" evidence=ISO

GO:0005932 "microtubule basal body" evidence=ISO

DICTYBASE|DDB_G0287273 wdr5 "WD40 repeat-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 287 (106.1 bits), Expect = 2.7e-24, P = 2.7e-24
 Identities = 75/296 (25%), Positives = 149/296 (50%)

Query:   503 IRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSS 562
             ++     ++   FS DGK LAS+  D+ + +W     + E T E HK  ++D+ +  +S 
Sbjct:    42 LKGHLKSISSVKFSPDGKWLASASADKTIKIWGAYDGKFERTLEGHKEGISDIAWSQDSK 101

Query:   563 QLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSI 622
              + +AS DK++++WD  +     +   GH   +  + F+P+ ++L      D  ++ W +
Sbjct:   102 LICSASDDKTIKIWDVESGKMV-KTLKGHKEYVFGVSFNPQ-SNLIVSGSFDENVRIWDV 159

Query:   623 NPFLCTHITKGGT---AQVRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHSLQGH-AELV 677
             N   CT +    +     V F  R G L+ + S D  V I+D  T +  +++     + V
Sbjct:   160 NTGECTKMISAHSDPVTGVHFN-RDGTLVVSGSYDGTVRIWDTTTGQLLNTISTEDGKEV 218

Query:   678 NYICWDTNGDY-LASVSQNLVKVWSMASGE-CIQELSSNGNQFHSCVFHPSYSTL---LV 732
             +++ +  NG + LA    N +++WS  + + C++  + + N+ + C+F     T    +V
Sbjct:   219 SFVKFSPNGKFVLAGTLDNTLRLWSYNNNKKCLKTYTGHKNEKY-CIFSTFSVTCGKWIV 277

Query:   733 VGGISSL-ELWNMAENKSM-TIAAHENIISALAQSPVTGMVASAS--HDSSVKLWK 784
              G   +L  ++N+   + + T+A HE+++  +A  P   ++AS +   D SVK+WK
Sbjct:   278 TGSEDNLIYIYNLQTREIVQTLAGHEDVVLTVACHPTENIIASGALEKDRSVKIWK 333

GO:0051568 "histone H3-K4 methylation" evidence=ISS

GO:0042393 "histone binding" evidence=ISS

GO:0035097 "histone methyltransferase complex" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|F1SIZ2 POC1A "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 285 (105.4 bits), Expect = 4.5e-24, P = 4.5e-24
 Identities = 85/290 (29%), Positives = 137/290 (47%)

Query:   504 RSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQ 563
             +     VTC  FS + K LAS   D  +++W+M           HK  VT V F P+   
Sbjct:    47 KGHRDAVTCVDFSFNMKQLASGSMDSCLMVWHMKPQSRAYRFTGHKDAVTCVNFSPSGHL 106

Query:   564 LATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSIN 623
             LA+ S DK+VR+W   N    S  +  H++ + S+ F       F    +D  I+ WS +
Sbjct:   107 LASGSRDKTVRIW-VPNIKGESTVFRAHTATVRSVHFCSDGQS-FVTASDDKTIKVWSTH 164

Query:   624 --PFLCT---HITKGGTAQVRFQPRIGQLLAAASD-KVVSIFDIETDRQ-THSLQGHAEL 676
                FL +   HI     A  +F P  G+L+ +ASD K V ++D +T R+  HS   H   
Sbjct:   165 RQKFLFSLSQHINWVRCA--KFSPD-GRLIVSASDDKTVKLWD-KTSRECVHSYCEHGGF 220

Query:   677 VNYICWDTNGDYLASVSQ-NLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGG 735
             V Y+ +  +G  +A+    N VKVW + +   +Q    +    ++  FHPS + L+    
Sbjct:   221 VTYVDFHPSGTCVAAAGMDNTVKVWDVRTHRLLQHYQLHSAAVNALSFHPSGNYLVTASS 280

Query:   736 ISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLWK 784
              S+L++ ++ E + + T+  H+   + +A S      AS   D  V +WK
Sbjct:   281 DSTLKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGSDEQVMVWK 330

GO:0005932 "microtubule basal body" evidence=IEA

GO:0005814 "centriole" evidence=IEA

UNIPROTKB|G3N3E5 WDR5 "WD repeat-containing protein 5" [Bos taurus (taxid:9913)]

 Score = 281 (104.0 bits), Expect = 1.2e-23, P = 1.2e-23
 Identities = 75/289 (25%), Positives = 150/289 (51%)

Query:   510 VTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASV 569
             V+   FS +G+ LASS  D+ + +W     + E T   HK  ++DV +  +S+ L +AS 
Sbjct:    22 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 81

Query:   570 DKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTH 629
             DK++++WD ++   C +   GHS+ +   +F+P+ ++L      D  ++ W +    C  
Sbjct:    82 DKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCLK 139

Query:   630 ITKGGT---AQVRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHSL-QGHAELVNYICWDT 684
                  +   + V F  R G L+ ++S D +  I+D  + +   +L       V+++ +  
Sbjct:   140 TLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 198

Query:   685 NGDY-LASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTL----LVVGGISSL 739
             NG Y LA+   N +K+W  + G+C++  + + N+ + C+F  ++S      +V G   +L
Sbjct:   199 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIF-ANFSVTGGKWIVSGSEDNL 256

Query:   740 E-LWNMAENKSMT-IAAHENIISALAQSPVTGMVASAS--HDSSVKLWK 784
               +WN+   + +  +  H +++ + A  P   ++ASA+  +D ++KLWK
Sbjct:   257 VYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 305

GO:0071339 "MLL1 complex" evidence=IEA

GO:0048188 "Set1C/COMPASS complex" evidence=IEA

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=IEA

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=IEA

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=IEA

GO:0043966 "histone H3 acetylation" evidence=IEA

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IEA

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=IEA

GO:0001501 "skeletal system development" evidence=IEA

UNIPROTKB|Q2KIG2 WDR5 "WD repeat-containing protein 5" [Bos taurus (taxid:9913)]

 Score = 281 (104.0 bits), Expect = 1.2e-23, P = 1.2e-23
 Identities = 75/289 (25%), Positives = 150/289 (51%)

Query:   510 VTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASV 569
             V+   FS +G+ LASS  D+ + +W     + E T   HK  ++DV +  +S+ L +AS 
Sbjct:    48 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 107

Query:   570 DKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTH 629
             DK++++WD ++   C +   GHS+ +   +F+P+ ++L      D  ++ W +    C  
Sbjct:   108 DKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCLK 165

Query:   630 ITKGGT---AQVRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHSL-QGHAELVNYICWDT 684
                  +   + V F  R G L+ ++S D +  I+D  + +   +L       V+++ +  
Sbjct:   166 TLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 224

Query:   685 NGDY-LASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTL----LVVGGISSL 739
             NG Y LA+   N +K+W  + G+C++  + + N+ + C+F  ++S      +V G   +L
Sbjct:   225 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIF-ANFSVTGGKWIVSGSEDNL 282

Query:   740 E-LWNMAENKSMT-IAAHENIISALAQSPVTGMVASAS--HDSSVKLWK 784
               +WN+   + +  +  H +++ + A  P   ++ASA+  +D ++KLWK
Sbjct:   283 VYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 331

GO:0000123 "histone acetyltransferase complex" evidence=ISS

GO:0035064 "methylated histone residue binding" evidence=ISS

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=ISS

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=ISS

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=ISS

GO:0043984 "histone H4-K16 acetylation" evidence=ISS

GO:0043982 "histone H4-K8 acetylation" evidence=ISS

GO:0043981 "histone H4-K5 acetylation" evidence=ISS

GO:0048188 "Set1C/COMPASS complex" evidence=ISS

GO:0035097 "histone methyltransferase complex" evidence=ISS

GO:0051568 "histone H3-K4 methylation" evidence=ISS

GO:0071339 "MLL1 complex" evidence=ISS

GO:0034968 "histone lysine methylation" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

UNIPROTKB|P61964 WDR5 "WD repeat-containing protein 5" [Homo sapiens (taxid:9606)]

 Score = 281 (104.0 bits), Expect = 1.2e-23, P = 1.2e-23
 Identities = 75/289 (25%), Positives = 150/289 (51%)

Query:   510 VTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASV 569
             V+   FS +G+ LASS  D+ + +W     + E T   HK  ++DV +  +S+ L +AS 
Sbjct:    48 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 107

Query:   570 DKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTH 629
             DK++++WD ++   C +   GHS+ +   +F+P+ ++L      D  ++ W +    C  
Sbjct:   108 DKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCLK 165

Query:   630 ITKGGT---AQVRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHSL-QGHAELVNYICWDT 684
                  +   + V F  R G L+ ++S D +  I+D  + +   +L       V+++ +  
Sbjct:   166 TLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 224

Query:   685 NGDY-LASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTL----LVVGGISSL 739
             NG Y LA+   N +K+W  + G+C++  + + N+ + C+F  ++S      +V G   +L
Sbjct:   225 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIF-ANFSVTGGKWIVSGSEDNL 282

Query:   740 E-LWNMAENKSMT-IAAHENIISALAQSPVTGMVASAS--HDSSVKLWK 784
               +WN+   + +  +  H +++ + A  P   ++ASA+  +D ++KLWK
Sbjct:   283 VYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 331

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0001501 "skeletal system development" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0048188 "Set1C/COMPASS complex" evidence=IDA

GO:0035097 "histone methyltransferase complex" evidence=IDA

GO:0051568 "histone H3-K4 methylation" evidence=IDA

GO:0071339 "MLL1 complex" evidence=IDA

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IDA

GO:0043984 "histone H4-K16 acetylation" evidence=IDA

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=IDA

GO:0000123 "histone acetyltransferase complex" evidence=IDA

GO:0043981 "histone H4-K5 acetylation" evidence=IDA

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=IDA

GO:0043982 "histone H4-K8 acetylation" evidence=IDA

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0043966 "histone H3 acetylation" evidence=IDA

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=IDA

UNIPROTKB|F1S034 WDR5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 281 (104.0 bits), Expect = 1.2e-23, P = 1.2e-23
 Identities = 75/289 (25%), Positives = 150/289 (51%)

Query:   510 VTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASV 569
             V+   FS +G+ LASS  D+ + +W     + E T   HK  ++DV +  +S+ L +AS 
Sbjct:    48 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 107

Query:   570 DKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTH 629
             DK++++WD ++   C +   GHS+ +   +F+P+ ++L      D  ++ W +    C  
Sbjct:   108 DKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCLK 165

Query:   630 ITKGGT---AQVRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHSL-QGHAELVNYICWDT 684
                  +   + V F  R G L+ ++S D +  I+D  + +   +L       V+++ +  
Sbjct:   166 TLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 224

Query:   685 NGDY-LASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTL----LVVGGISSL 739
             NG Y LA+   N +K+W  + G+C++  + + N+ + C+F  ++S      +V G   +L
Sbjct:   225 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIF-ANFSVTGGKWIVSGSEDNL 282

Query:   740 E-LWNMAENKSMT-IAAHENIISALAQSPVTGMVASAS--HDSSVKLWK 784
               +WN+   + +  +  H +++ + A  P   ++ASA+  +D ++KLWK
Sbjct:   283 VYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 331

GO:0071339 "MLL1 complex" evidence=IEA

GO:0048188 "Set1C/COMPASS complex" evidence=IEA

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=IEA

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=IEA

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=IEA

GO:0043966 "histone H3 acetylation" evidence=IEA

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IEA

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=IEA

GO:0001501 "skeletal system development" evidence=IEA

MGI|MGI:2155884 Wdr5 "WD repeat domain 5" [Mus musculus (taxid:10090)]

 Score = 281 (104.0 bits), Expect = 1.2e-23, P = 1.2e-23
 Identities = 75/289 (25%), Positives = 150/289 (51%)

Query:   510 VTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASV 569
             V+   FS +G+ LASS  D+ + +W     + E T   HK  ++DV +  +S+ L +AS 
Sbjct:    48 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 107

Query:   570 DKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTH 629
             DK++++WD ++   C +   GHS+ +   +F+P+ ++L      D  ++ W +    C  
Sbjct:   108 DKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCLK 165

Query:   630 ITKGGT---AQVRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHSL-QGHAELVNYICWDT 684
                  +   + V F  R G L+ ++S D +  I+D  + +   +L       V+++ +  
Sbjct:   166 TLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 224

Query:   685 NGDY-LASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTL----LVVGGISSL 739
             NG Y LA+   N +K+W  + G+C++  + + N+ + C+F  ++S      +V G   +L
Sbjct:   225 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIF-ANFSVTGGKWIVSGSEDNL 282

Query:   740 E-LWNMAENKSMT-IAAHENIISALAQSPVTGMVASAS--HDSSVKLWK 784
               +WN+   + +  +  H +++ + A  P   ++ASA+  +D ++KLWK
Sbjct:   283 VYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 331

GO:0000123 "histone acetyltransferase complex" evidence=ISO

GO:0001501 "skeletal system development" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005622 "intracellular" evidence=IDA

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=ISO;IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0035097 "histone methyltransferase complex" evidence=ISO

GO:0043966 "histone H3 acetylation" evidence=ISO

GO:0043981 "histone H4-K5 acetylation" evidence=ISO

GO:0043982 "histone H4-K8 acetylation" evidence=ISO

GO:0043984 "histone H4-K16 acetylation" evidence=ISO

GO:0048188 "Set1C/COMPASS complex" evidence=ISO

GO:0051568 "histone H3-K4 methylation" evidence=ISO

GO:0071339 "MLL1 complex" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00033847001 SubName- Full=Chromosome undetermined scaffold_70, whole genome shotgun sequence; (783 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	784
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-61
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-31
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-31
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-15
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-15
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	8e-07
smart00320	40	smart00320, WD40, WD40 repeats	9e-07
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	1e-06
smart00320	40	smart00320, WD40, WD40 repeats	9e-06
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-05
pfam08513	27	pfam08513, LisH, LisH	2e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	3e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	5e-04
smart00320	40	smart00320, WD40, WD40 repeats	5e-04
smart00320	40	smart00320, WD40, WD40 repeats	5e-04
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	7e-04
pfam09606	768	pfam09606, Med15, ARC105 or Med15 subunit of Media	0.002

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  208 bits (531), Expect = 2e-61
 Identities = 83/292 (28%), Positives = 144/292 (49%), Gaps = 9/292 (3%)

Query: 499 EVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFR 558
               ++     VTC  FS DGKLLA+   D  + +W+++T +   T + H   V DV   
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60

Query: 559 PNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQ 618
            + + LA+ S DK++RLWD      C +  TGH+S + S+ F P    +      D  I+
Sbjct: 61  ADGTYLASGSSDKTIRLWDLETGE-CVRTLTGHTSYVSSVAFSPDGR-ILSSSSRDKTIK 118

Query: 619 YWSINPFLCTHITKGGTAQV---RFQPRIGQLLAAAS-DKVVSIFDIETDRQTHSLQGHA 674
            W +    C    +G T  V    F P  G  +A++S D  + ++D+ T +   +L GH 
Sbjct: 119 VWDVETGKCLTTLRGHTDWVNSVAFSPD-GTFVASSSQDGTIKLWDLRTGKCVATLTGHT 177

Query: 675 ELVNYICWDTNG-DYLASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVV 733
             VN + +  +G   L+S S   +K+W +++G+C+  L  + N  +S  F P    L   
Sbjct: 178 GEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASG 237

Query: 734 GGISSLELWNMAENK-SMTIAAHENIISALAQSPVTGMVASASHDSSVKLWK 784
               ++ +W++   +   T++ H N +++LA SP    +AS S D ++++W 
Sbjct: 238 SEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  129 bits (323), Expect = 1e-31
 Identities = 82/298 (27%), Positives = 136/298 (45%), Gaps = 17/298 (5%)

Query: 503 IRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDT--LQTESTPEDHKSVVTDVRFR-P 559
           +R     +T   FS DG+LL S   D  + LW++D      +S    H S V+ +    P
Sbjct: 61  LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSP 120

Query: 560 NSSQLATA--SVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEI 617
           + + +  A  S+D +V+LWD + P    +   GHS  + SL F P    L      D  I
Sbjct: 121 DGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTI 180

Query: 618 QYWSINPFLCTHITKGGTAQVR---FQPRIGQLLAAAS-DKVVSIFDIETDRQTHS-LQG 672
           + W +          G T  V    F P  G L+A+ S D  + ++D+ T +   S L G
Sbjct: 181 KLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSG 240

Query: 673 HAELVNYICWDTNGDYLASVSQ-NLVKVWSMASG-ECIQELSSNGNQFHSCVFHPSYSTL 730
           H++      +  +G  LAS S    +++W + S    ++ LS + +   S  F P    L
Sbjct: 241 HSD-SVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLL 299

Query: 731 LVVGGISSLELWNMAENK---SMTIAAHENIISALAQSP-VTGMVASASHDSSVKLWK 784
                  ++ LW++   K   S+T+  HE  +S+L+ SP  + +V+  S D +++LW 
Sbjct: 300 ASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWD 357

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  127 bits (320), Expect = 3e-31
 Identities = 75/299 (25%), Positives = 136/299 (45%), Gaps = 14/299 (4%)

Query: 497 FCEVGCIRSRNSKVTCCHFSSDGKLLAS-SGHDRKVVLWNMDTLQTESTPEDHKSVVTDV 555
              +  +   +  VT   FS DGKLLAS S  D  + LW++ T +  ST   H   V+ +
Sbjct: 145 GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSL 204

Query: 556 RFRPNSS-QLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDND 614
            F P+    +A+ S D ++RLWD +         +GHS  ++S  F P  + L     +D
Sbjct: 205 AFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSS-FSPDGSLLAS-GSSD 262

Query: 615 NEIQYWSINPFL-CTHITKGGTAQVR---FQPRIGQLLAAASDKVVSIFDIETDRQTH-- 668
             I+ W +           G ++ V    F P    L + +SD  V ++D+ET +     
Sbjct: 263 GTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSL 322

Query: 669 SLQGHAELVNYICWDTNGDYLASVSQ--NLVKVWSMASGECIQELSSNGNQFHSCVFHPS 726
           +L+GH   V+ + +  +G  L S       +++W + +G+ ++ L    +   S  F P 
Sbjct: 323 TLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEG-HSNVLSVSFSPD 381

Query: 727 YSTLLVVGGISSLELWNMAENKS-MTIAAHENIISALAQSPVTGMVASASHDSSVKLWK 784
              +       ++ LW+++       +  H + +++L  SP    +AS S D++++LW 
Sbjct: 382 GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWD 440

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 80.1 bits (196), Expect = 1e-15
 Identities = 46/178 (25%), Positives = 81/178 (45%), Gaps = 9/178 (5%)

Query: 496 TFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTES--TPEDHKSVVT 553
           +   +  +   +S V    FS DGKLLAS   D  V LW+++T +  S  T + H+  V+
Sbjct: 273 SSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVS 332

Query: 554 DVRFRPNSSQLATA-SVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCD 612
            + F P+ S L +  S D ++RLWD               S ++S+ F P    +     
Sbjct: 333 SLSFSPDGSLLVSGGSDDGTIRLWDLRTGK--PLKTLEGHSNVLSVSFSPDG-RVVSSGS 389

Query: 613 NDNEIQYWSINPFLCTHITKGGTAQVR---FQPRIGQLLAAASDKVVSIFDIETDRQT 667
            D  ++ W ++         G T++V    F P    L + +SD  + ++D++T  ++
Sbjct: 390 TDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKS 447

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 80.1 bits (196), Expect = 1e-15
 Identities = 59/272 (21%), Positives = 115/272 (42%), Gaps = 23/272 (8%)

Query: 533 LWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRL-----WDAANPNFCSQA 587
           L +  +  +E+  +  K           S     +S    + L        + P+  S  
Sbjct: 1   LVDNSSTSSENKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLL 60

Query: 588 YTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSIN-PFLCTHITKGGT----AQVRFQP 642
             GH   I S+ F P   +L     +D  I+ W ++         +G      +++    
Sbjct: 61  LRGHEDSITSIAFSPDG-ELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSS 119

Query: 643 RIGQLLAAAS---DKVVSIFDIETD-RQTHSLQGHAELVNYICWDTNGDYLASVSQ--NL 696
             G  +  AS   D  V ++D+ T  +   +L+GH+E V  + +  +G  LAS S     
Sbjct: 120 PDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGT 179

Query: 697 VKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGI-SSLELWNMAENK--SMTIA 753
           +K+W + +G+ +  L+ + +   S  F P    L+  G    ++ LW+++  K    T++
Sbjct: 180 IKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLS 239

Query: 754 AHEN-IISALAQSPVTGMVASASHDSSVKLWK 784
            H + ++S+   SP   ++AS S D +++LW 
Sbjct: 240 GHSDSVVSSF--SPDGSLLASGSSDGTIRLWD 269

Length = 466

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 45.8 bits (109), Expect = 8e-07
 Identities = 15/34 (44%), Positives = 21/34 (61%)

Query: 544 TPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWD 577
           T + H   VT V F P+ + LA+ S D +VR+WD
Sbjct: 6   TLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 45.8 bits (109), Expect = 9e-07
 Identities = 14/40 (35%), Positives = 22/40 (55%)

Query: 538 TLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWD 577
           + +   T + H   VT V F P+   LA+ S D +++LWD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 51.6 bits (123), Expect = 1e-06
 Identities = 43/201 (21%), Positives = 96/201 (47%), Gaps = 13/201 (6%)

Query: 515 FSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNS--------SQLAT 566
           F  DG+  A++G ++K+ ++  +++  +     +  V    R + +         SQ+A+
Sbjct: 491 FDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVAS 550

Query: 567 ASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFL 626
           ++ +  V++WD A     ++    H   + S+D+      L     +D  ++ WSIN  +
Sbjct: 551 SNFEGVVQVWDVARSQLVTEMKE-HEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV 609

Query: 627 C--THITKGGTAQVRFQPRIGQLLA-AASDKVVSIFDIETDR-QTHSLQGHAELVNYICW 682
              T  TK     V+F    G+ LA  ++D  V  +D+   +    ++ GH++ V+Y+ +
Sbjct: 610 SIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRF 669

Query: 683 DTNGDYLASVSQNLVKVWSMA 703
             +   ++S + N +K+W ++
Sbjct: 670 VDSSTLVSSSTDNTLKLWDLS 690

Length = 793

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 42.7 bits (101), Expect = 9e-06
 Identities = 13/40 (32%), Positives = 19/40 (47%)

Query: 496 TFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWN 535
           +   +  ++     VT   FS DGK LAS   D  + LW+
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 26/79 (32%), Positives = 38/79 (48%)

Query: 508 SKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATA 567
           S V    FS DG++++S   D  V LW++ T       + H S VT + F P+   LA+ 
Sbjct: 371 SNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASG 430

Query: 568 SVDKSVRLWDAANPNFCSQ 586
           S D ++RLWD         
Sbjct: 431 SSDNTIRLWDLKTSLKSVS 449

Length = 466

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 41.6 bits (98), Expect = 2e-05
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 503 IRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWN 535
           ++     VT   FS DG LLAS   D  V +W+
Sbjct: 7   LKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|149534 pfam08513, LisH, LisH

 Score = 38.5 bits (91), Expect = 2e-04
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 10 KMLDVYIHDYFLKRKLHASAKAFMTEG 36
          + L+  I+DY +K     +A+AF  E 
Sbjct: 1  EELNRLIYDYLVKSGYKETAEAFAKES 27

The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex. Length = 27

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 38.5 bits (90), Expect = 3e-04
 Identities = 11/34 (32%), Positives = 21/34 (61%)

Query: 751 TIAAHENIISALAQSPVTGMVASASHDSSVKLWK 784
           T+  H   ++++A SP   ++AS S D +V++W 
Sbjct: 6   TLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 37.7 bits (88), Expect = 5e-04
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 665 RQTHSLQGHAELVNYICWDTNGDYLASVSQ-NLVKVWS 701
           +   +L+GH   V  + +  +G+ LAS S    V+VW 
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 38.1 bits (89), Expect = 5e-04
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 663 TDRQTHSLQGHAELVNYICWDTNGDYLASVSQ-NLVKVWS 701
           +     +L+GH   V  + +  +G YLAS S    +K+W 
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 37.7 bits (88), Expect = 5e-04
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 750 MTIAAHENIISALAQSPVTGMVASASHDSSVKLWK 784
            T+  H   ++++A SP    +AS S D ++KLW 
Sbjct: 6   KTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 42.6 bits (100), Expect = 7e-04
 Identities = 33/146 (22%), Positives = 59/146 (40%), Gaps = 36/146 (24%)

Query: 552 VTDVRFRP-NSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCF 610
           + DV F P +  +L TAS D ++  W               S PI+ L  H KK  +   
Sbjct: 78  IIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNI----SDPIVHLQGHTKKVGI--- 130

Query: 611 CDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAA-SDKVVSIFDIETDRQTHS 669
                                      V F P    +LA+A +D VV+++D+E  +    
Sbjct: 131 ---------------------------VSFHPSAMNVLASAGADMVVNVWDVERGKAVEV 163

Query: 670 LQGHAELVNYICWDTNGDYLASVSQN 695
           ++ H++ +  + W+ +G  L + S++
Sbjct: 164 IKCHSDQITSLEWNLDGSLLCTTSKD 189

Length = 493

>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal

 Score = 41.5 bits (97), Expect = 0.002
 Identities = 59/348 (16%), Positives = 92/348 (26%), Gaps = 29/348 (8%)

Query: 82  QQIKTREQQQLQMQQLQFM---QHRNAQLQRRDPNHPSLGGSV-SALNSEGMMGQPSASV 137
            Q +   Q   Q  Q Q      ++  Q        P +G         +G M Q     
Sbjct: 158 PQSQQPNQMGPQQGQAQGQAGGMNQGQQGPVGQQQPPQMGQPGMPGGGGQGQMQQQGQPG 217

Query: 138 LAMKMYEERTKHPHSM---DLDTSPALMDANKMALLKATTNPQGQLAQGSSGNISAAMQR 194
              +   +  +   +     +D      DA      +       Q  Q   G +   MQ+
Sbjct: 218 GQQQQNPQMQQQLQNQQQQQMDQQQGPADAQAQMGQQQQGQGGMQPQQMQGGQMQVPMQQ 277

Query: 195 IQGRTTLTSDIKSEANLGATQKS-LPMDPSSMYGQAM-----FQPKSVLGSSGLNQGVAG 248
              +        S+  +   Q   +P       GQ M            G   + QGV  
Sbjct: 278 QPPQQQPQQ---SQLGMLPNQMQQMPGGGQGGPGQPMGPPPQRPGAVPQGGQAVQQGVMS 334

Query: 249 LPLKGWPLIGPDQLRPGLGMQVQKPNMQMHNQFLLASQQPQQVLAQGQ--PPNNLRNSTS 306
              +    +    +R     Q Q+     ++      Q  QQV   GQ      L    +
Sbjct: 335 AGQQQLKQMKLRNMRGQQQTQQQQQQQGGNHPAAHQQQMNQQVGQGGQMVALGYLNIQGN 394

Query: 307 YGDMDPRNFCQLTRGNMNVKD-GQSTRNDGSICSPVQSSSPKMKVAQMQHSSS------- 358
            G +      Q   G M+        + + S+  P Q S P       Q   S       
Sbjct: 395 QGGLGANPMQQGQPGMMSSPSPVPQVQTNQSMPQPPQPSVPSPGGPGSQPPQSVSGGMIP 454

Query: 359 --QHQDQLQQQQPQQLPQGNRKRKNSSSGAANSTGT-GNTVGPSPNSP 403
                      Q  Q P   R  +           T G +   SP +P
Sbjct: 455 SPPALMPSPSPQMSQSPASQRTIQQDMVSPGGPLNTPGQSSVNSPANP 502

The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	784
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.98
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.98
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.98
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.98
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.98
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.97
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.97
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.97
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.97
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.97
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0296	399	consensus Angio-associated migratory cell protein	99.97
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.97
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.97
KOG0266	456	consensus WD40 repeat-containing protein [General	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.97
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.97
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.96
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.96
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.96
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.96
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.96
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.96
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.96
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.96
KOG0645	312	consensus WD40 repeat protein [General function pr	99.96
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.96
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.96
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.96
PLN00181	793	protein SPA1-RELATED; Provisional	99.96
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.96
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.96
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.96
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.95
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.95
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.95
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.95
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.95
KOG0289	506	consensus mRNA splicing factor [General function p	99.95
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.95
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.95
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.95
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.95
PTZ00421	493	coronin; Provisional	99.95
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.95
PTZ00420	568	coronin; Provisional	99.95
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.94
KOG0641	350	consensus WD40 repeat protein [General function pr	99.94
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.94
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.94
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.94
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.94
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.94
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.93
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.93
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.93
KOG1539	910	consensus WD repeat protein [General function pred	99.93
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.93
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.93
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.93
PTZ00421	493	coronin; Provisional	99.93
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.93
KOG0643	327	consensus Translation initiation factor 3, subunit	99.93
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.93
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.93
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.93
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.93
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.92
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.92
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.92
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.92
KOG0641	350	consensus WD40 repeat protein [General function pr	99.92
KOG0639	705	consensus Transducin-like enhancer of split protei	99.92
KOG2096	420	consensus WD40 repeat protein [General function pr	99.92
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.92
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.92
KOG0289	506	consensus mRNA splicing factor [General function p	99.92
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.92
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.91
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.91
KOG2055	514	consensus WD40 repeat protein [General function pr	99.91
KOG1273	405	consensus WD40 repeat protein [General function pr	99.91
PTZ00420	568	coronin; Provisional	99.91
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.91
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.91
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.9
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.9
KOG1539	910	consensus WD repeat protein [General function pred	99.9
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.9
KOG1274	933	consensus WD40 repeat protein [General function pr	99.9
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.9
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.89
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.89
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.89
KOG2048	691	consensus WD40 repeat protein [General function pr	99.89
KOG0267	825	consensus Microtubule severing protein katanin p80	99.88
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.88
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.88
KOG0646	476	consensus WD40 repeat protein [General function pr	99.88
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.88
KOG0639	705	consensus Transducin-like enhancer of split protei	99.88
KOG0267	825	consensus Microtubule severing protein katanin p80	99.87
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.87
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.87
KOG1274	933	consensus WD40 repeat protein [General function pr	99.87
KOG0646	476	consensus WD40 repeat protein [General function pr	99.87
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.86
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.86
KOG4328	498	consensus WD40 protein [Function unknown]	99.86
KOG2055	514	consensus WD40 repeat protein [General function pr	99.85
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.85
KOG2096	420	consensus WD40 repeat protein [General function pr	99.84
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.84
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.84
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.84
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.84
KOG1273	405	consensus WD40 repeat protein [General function pr	99.83
COG2319	466	FOG: WD40 repeat [General function prediction only	99.83
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.83
KOG4328	498	consensus WD40 protein [Function unknown]	99.83
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.83
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.82
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.82
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.82
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.82
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.82
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.82
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.82
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.81
COG2319	466	FOG: WD40 repeat [General function prediction only	99.81
KOG2048	691	consensus WD40 repeat protein [General function pr	99.81
KOG4227	609	consensus WD40 repeat protein [General function pr	99.8
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.8
KOG1188	376	consensus WD40 repeat protein [General function pr	99.79
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.79
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.78
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.77
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.77
PRK11028	330	6-phosphogluconolactonase; Provisional	99.76
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.76
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.76
PRK11028	330	6-phosphogluconolactonase; Provisional	99.76
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.76
KOG1334	559	consensus WD40 repeat protein [General function pr	99.75
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.74
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.74
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.74
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.74
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.73
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.73
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.72
KOG1963	792	consensus WD40 repeat protein [General function pr	99.72
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.71
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.71
KOG0649	325	consensus WD40 repeat protein [General function pr	99.7
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.69
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.69
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.69
KOG0649	325	consensus WD40 repeat protein [General function pr	99.69
PRK01742	429	tolB translocation protein TolB; Provisional	99.68
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.68
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.67
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.67
KOG4227	609	consensus WD40 repeat protein [General function pr	99.67
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.67
KOG1188	376	consensus WD40 repeat protein [General function pr	99.66
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.66
KOG1310	758	consensus WD40 repeat protein [General function pr	99.64
KOG2139	445	consensus WD40 repeat protein [General function pr	99.64
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.62
PRK03629	429	tolB translocation protein TolB; Provisional	99.62
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.61
PRK01742	429	tolB translocation protein TolB; Provisional	99.61
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.6
KOG2321	703	consensus WD40 repeat protein [General function pr	99.59
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.59
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.58
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.58
PRK04922	433	tolB translocation protein TolB; Provisional	99.58
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.57
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.57
PRK05137	435	tolB translocation protein TolB; Provisional	99.57
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.57
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.57
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.56
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.56
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.55
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.55
PRK02889	427	tolB translocation protein TolB; Provisional	99.53
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.53
PRK02889	427	tolB translocation protein TolB; Provisional	99.53
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.53
KOG1963	792	consensus WD40 repeat protein [General function pr	99.53
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.52
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.51
KOG4594	354	consensus Sequence-specific single-stranded-DNA-bi	99.51
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.51
KOG1334	559	consensus WD40 repeat protein [General function pr	99.51
PRK03629	429	tolB translocation protein TolB; Provisional	99.5
PRK04922	433	tolB translocation protein TolB; Provisional	99.5
KOG1310	758	consensus WD40 repeat protein [General function pr	99.49
KOG2315	566	consensus Predicted translation initiation factor	99.47
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.45
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.45
PRK05137	435	tolB translocation protein TolB; Provisional	99.45
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.44
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.43
PRK00178	430	tolB translocation protein TolB; Provisional	99.43
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.42
KOG2321	703	consensus WD40 repeat protein [General function pr	99.42
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.42
PRK04792	448	tolB translocation protein TolB; Provisional	99.41
KOG2139	445	consensus WD40 repeat protein [General function pr	99.39
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.38
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.38
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.38
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.38
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.36
PRK00178	430	tolB translocation protein TolB; Provisional	99.33
PRK04792	448	tolB translocation protein TolB; Provisional	99.31
PRK01029	428	tolB translocation protein TolB; Provisional	99.31
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.31
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.3
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.3
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.28
KOG2315	566	consensus Predicted translation initiation factor	99.27
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.24
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.24
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.23
PRK01029	428	tolB translocation protein TolB; Provisional	99.23
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.23
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.21
KOG4547	541	consensus WD40 repeat-containing protein [General	99.19
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.18
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.18
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.16
KOG4547	541	consensus WD40 repeat-containing protein [General	99.16
KOG2314	698	consensus Translation initiation factor 3, subunit	99.14
KOG2314	698	consensus Translation initiation factor 3, subunit	99.12
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.11
COG4946	668	Uncharacterized protein related to the periplasmic	99.1
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.1
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.1
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.06
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.04
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.02
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.02
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.02
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.01
PRK04043	419	tolB translocation protein TolB; Provisional	99.01
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.0
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.99
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.98
PRK04043	419	tolB translocation protein TolB; Provisional	98.97
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.93
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.92
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.91
COG4946	668	Uncharacterized protein related to the periplasmic	98.89
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.86
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.86
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.85
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.84
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.82
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.82
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.78
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.78
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.77
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.73
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.72
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.71
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.69
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.65
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.65
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.61
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.61
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.61
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.61
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.6
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.59
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.58
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.57
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.57
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.52
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.51
PF08513	27	LisH: LisH; InterPro: IPR013720 The LisH motif is	98.51
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.49
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.46
KOG2695	425	consensus WD40 repeat protein [General function pr	98.45
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.42
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.42
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.39
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	98.34
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.32
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.3
PRK02888	635	nitrous-oxide reductase; Validated	98.3
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.28
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.28
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.28
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.27
KOG2695	425	consensus WD40 repeat protein [General function pr	98.24
KOG3621	726	consensus WD40 repeat-containing protein [General	98.24
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.23
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.22
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.22
PRK02888	635	nitrous-oxide reductase; Validated	98.19
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.17
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.16
COG3391	381	Uncharacterized conserved protein [Function unknow	98.15
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.15
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.14
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.07
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.01
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.0
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.0
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.97
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.96
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.94
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.9
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.89
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.88
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.88
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.86
COG3391	381	Uncharacterized conserved protein [Function unknow	97.86
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.86
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.83
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.81
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.8
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.8
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	97.76
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.74
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.74
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.71
KOG3621	726	consensus WD40 repeat-containing protein [General	97.69
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.56
PRK10115	686	protease 2; Provisional	97.54
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.52
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.52
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.52
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.48
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.48
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.47
PF14727	418	PHTB1_N: PTHB1 N-terminus	97.41
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.38
PRK13616	591	lipoprotein LpqB; Provisional	97.26
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	97.25
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	97.18
PRK10115	686	protease 2; Provisional	97.18
PRK13616	591	lipoprotein LpqB; Provisional	97.15
KOG2395	644	consensus Protein involved in vacuole import and d	97.09
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.08
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.08
smart00667	34	LisH Lissencephaly type-1-like homology motif. Alp	97.04
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.96
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.9
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.87
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.81
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.8
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.79
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.41
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.41
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.4
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.39
PHA02713	557	hypothetical protein; Provisional	96.35
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.31
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	96.29
PRK13684	334	Ycf48-like protein; Provisional	96.28
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.22
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.16
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.15
KOG2444	238	consensus WD40 repeat protein [General function pr	96.14
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.13
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	96.01
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.01
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	95.94
PHA02713	557	hypothetical protein; Provisional	95.92
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	95.92
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	95.74
COG1520	370	FOG: WD40-like repeat [Function unknown]	95.72
KOG2395	644	consensus Protein involved in vacuole import and d	95.72
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.71
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	95.59
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	95.45
COG5276	370	Uncharacterized conserved protein [Function unknow	95.44
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.42
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	95.41
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	95.2
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	95.16
COG5276	370	Uncharacterized conserved protein [Function unknow	95.05
KOG2444	238	consensus WD40 repeat protein [General function pr	94.98
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	94.96
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.96
PHA03098	534	kelch-like protein; Provisional	94.96
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	94.86
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	94.84
COG3292	671	Predicted periplasmic ligand-binding sensor domain	94.79
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	94.69
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	94.69
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	94.67
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	94.61
PLN00033	398	photosystem II stability/assembly factor; Provisio	94.61
PRK13684	334	Ycf48-like protein; Provisional	94.59
PF14727	418	PHTB1_N: PTHB1 N-terminus	94.55
PHA03098	534	kelch-like protein; Provisional	94.51
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	94.49
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	94.48
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.48
KOG2377	657	consensus Uncharacterized conserved protein [Funct	94.34
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	94.29
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	94.25
smart00036	302	CNH Domain found in NIK1-like kinases, mouse citro	94.18
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	94.08
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	94.07
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	93.98
PLN02153	341	epithiospecifier protein	93.89
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	93.13
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	92.71
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	92.65
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	92.57
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	92.5
PHA02790	480	Kelch-like protein; Provisional	92.39
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	92.25
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	92.12
PHA02790	480	Kelch-like protein; Provisional	91.92
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	91.66
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	91.64
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	91.23
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	90.89
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	90.83
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	90.73
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	90.54
PLN02153	341	epithiospecifier protein	90.32
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	90.31
KOG2377	657	consensus Uncharacterized conserved protein [Funct	90.16
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	90.06
COG1506	620	DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept	89.85
COG5167	776	VID27 Protein involved in vacuole import and degra	89.83
PRK05560	805	DNA gyrase subunit A; Validated	89.79
PRK13979	957	DNA topoisomerase IV subunit A; Provisional	89.77
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	89.7
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	89.64
KOG2247	615	consensus WD40 repeat-containing protein [General	89.55
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	89.54
PLN02193	470	nitrile-specifier protein	89.45
PLN00033	398	photosystem II stability/assembly factor; Provisio	89.42
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	89.26
smart00036	302	CNH Domain found in NIK1-like kinases, mouse citro	89.06
COG5167	776	VID27 Protein involved in vacuole import and degra	88.93
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	88.84
KOG3598	2220	consensus Thyroid hormone receptor-associated prot	88.61
KOG2247	615	consensus WD40 repeat-containing protein [General	88.6
COG3292	671	Predicted periplasmic ligand-binding sensor domain	88.53
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	87.99
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	87.91
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	87.84
KOG1896	1366	consensus mRNA cleavage and polyadenylation factor	87.28
COG1520	370	FOG: WD40-like repeat [Function unknown]	87.19
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	87.03
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	86.97
PF13449	326	Phytase-like: Esterase-like activity of phytase	86.91
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	86.84
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	86.67
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	86.44
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	86.07
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	86.01
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	85.98
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	85.74
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	85.13
PLN02193	470	nitrile-specifier protein	85.11
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	84.74
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	84.7
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	84.7
COG1770	682	PtrB Protease II [Amino acid transport and metabol	83.61

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.8e-44  Score=368.56  Aligned_cols=320  Identities=23%  Similarity=0.383  Sum_probs=280.7

Q ss_pred             CCCCCcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEE
Q 047260          435 EGTGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCH  514 (784)
Q Consensus       435 ~~~~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~  514 (784)
                      .|++..+-+..|.++..+++ +||-|.++++|+....                          ....+.++|...|.|++
T Consensus       112 ~GH~e~Vl~~~fsp~g~~l~-tGsGD~TvR~WD~~Te--------------------------Tp~~t~KgH~~WVlcva  164 (480)
T KOG0271|consen  112 AGHGEAVLSVQFSPTGSRLV-TGSGDTTVRLWDLDTE--------------------------TPLFTCKGHKNWVLCVA  164 (480)
T ss_pred             CCCCCcEEEEEecCCCceEE-ecCCCceEEeeccCCC--------------------------CcceeecCCccEEEEEE
Confidence            34555566778888666665 6999999999966221                          24567789999999999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCcee-eecCCCCCCeEEEEEcc-----CCCEEEEEeCCCeEEEEcCCCCcceeeec
Q 047260          515 FSSDGKLLASSGHDRKVVLWNMDTLQTE-STPEDHKSVVTDVRFRP-----NSSQLATASVDKSVRLWDAANPNFCSQAY  588 (784)
Q Consensus       515 fspdg~~Lasgs~Dg~I~IWd~~t~~~~-~~l~~h~~~It~i~fsp-----dg~~Latgs~Dg~I~IWdl~~~~~~~~~~  588 (784)
                      |+|||+.||+|+.||.|++||.++++.+ ..+.+|...|++++|.|     ..++|++++.||.|+|||+..+. ++..+
T Consensus       165 wsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~-~~~~l  243 (480)
T KOG0271|consen  165 WSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT-CVRTL  243 (480)
T ss_pred             ECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce-EEEEe
Confidence            9999999999999999999999987765 57889999999999987     56799999999999999998766 88889


Q ss_pred             cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecC---CeeEEE-----------EecCCC---------
Q 047260          589 TGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKG---GTAQVR-----------FQPRIG---------  645 (784)
Q Consensus       589 ~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~---~v~~v~-----------fsp~~~---------  645 (784)
                      .+|+.+|+|+.|--+  .++++++.|++|++|+...+.+.+.+++   .|+.++           |.|.+.         
T Consensus       244 sgHT~~VTCvrwGG~--gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~  321 (480)
T KOG0271|consen  244 SGHTASVTCVRWGGE--GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQ  321 (480)
T ss_pred             ccCccceEEEEEcCC--ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHH
Confidence            999999999999744  4999999999999999988777666654   344444           334343         


Q ss_pred             ----------------EEEEEECCCcEEEEECCCC-eEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCce
Q 047260          646 ----------------QLLAAASDKVVSIFDIETD-RQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGEC  707 (784)
Q Consensus       646 ----------------~Ll~~s~Dg~I~IwDl~t~-~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~  707 (784)
                                      .+++|+.|.++.+|+.... +++....+|...|+.+.|+||+++|++++-| .|++||.++|+.
T Consensus       322 ~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~  401 (480)
T KOG0271|consen  322 KKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKF  401 (480)
T ss_pred             HHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcch
Confidence                            4999999999999997654 5888889999999999999999999999955 999999999999


Q ss_pred             EEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE-EecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          708 IQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       708 i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      +.+|.+|-..|+.++|+.|.+.|++|+.|.++++||+++.+.. .+.+|.+.|.++.|+|||..+++|+.|..+++|.
T Consensus       402 lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  402 LASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             hhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence            9999999999999999999999999999999999999998877 7889999999999999999999999999999995

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.7e-42  Score=354.93  Aligned_cols=287  Identities=23%  Similarity=0.383  Sum_probs=263.8

Q ss_pred             eeEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEE
Q 047260          497 FCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLW  576 (784)
Q Consensus       497 ~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IW  576 (784)
                      +.+-..+.+|.+.|.|+.|+|+|..||+|+.|.++++||+.+..+..+.++|...|.||+|+|||+.||+|+.||+|++|
T Consensus       105 trCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lw  184 (480)
T KOG0271|consen  105 TRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLW  184 (480)
T ss_pred             ceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEe
Confidence            34556788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCcceeeeccCCCCCeEEEEEcCC----CCcEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEE
Q 047260          577 DAANPNFCSQAYTGHSSPIMSLDFHPK----KTDLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLA  649 (784)
Q Consensus       577 dl~~~~~~~~~~~~h~~~V~sl~~sp~----~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~  649 (784)
                      |.+++....+.+.+|...|++++|.|-    +..++++++.||.|+|||+..+.++....   ..|+|++|--+ ++|++
T Consensus       185 dpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliyS  263 (480)
T KOG0271|consen  185 DPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYS  263 (480)
T ss_pred             cCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceEEe
Confidence            999999899999999999999999873    34489999999999999999988877655   56888888654 68999


Q ss_pred             EECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEc-----------CCCC-------------------------EEEEEe
Q 047260          650 AASDKVVSIFDIETDRQTHSLQGHAELVNYICWD-----------TNGD-------------------------YLASVS  693 (784)
Q Consensus       650 ~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~s-----------pdg~-------------------------~Lasgs  693 (784)
                      ++.|++|++|+...|++++.+++|...|+.++++           |.++                         .|++|+
T Consensus       264 gS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgs  343 (480)
T KOG0271|consen  264 GSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGS  343 (480)
T ss_pred             cCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEec
Confidence            9999999999999999999999999999999876           2233                         499999


Q ss_pred             CC-eEEEEeCCC-CceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE-EecccCCceEEEEEeCCCCE
Q 047260          694 QN-LVKVWSMAS-GECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGM  770 (784)
Q Consensus       694 dd-~I~IwDl~t-~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg~~  770 (784)
                      || ++.+|+... .+++....+|...|+.+.|+||+++|++++-|..|++||.++++.+ .+.+|-+.|..++|+.|.++
T Consensus       344 Dd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRL  423 (480)
T KOG0271|consen  344 DDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRL  423 (480)
T ss_pred             CCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccE
Confidence            98 999999765 4688899999999999999999999999999999999999999988 77889999999999999999


Q ss_pred             EEEEECCCcEEEeC
Q 047260          771 VASASHDSSVKLWK  784 (784)
Q Consensus       771 LaSgs~DG~V~IWd  784 (784)
                      |++|+.|.+++|||
T Consensus       424 lVS~SkDsTLKvw~  437 (480)
T KOG0271|consen  424 LVSGSKDSTLKVWD  437 (480)
T ss_pred             EEEcCCCceEEEEE
Confidence            99999999999997

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=4.6e-40  Score=342.98  Aligned_cols=279  Identities=24%  Similarity=0.406  Sum_probs=262.8

Q ss_pred             ecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccC--CCEEEEEeCCCeEEEEcCCCC
Q 047260          504 RSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPN--SSQLATASVDKSVRLWDAANP  581 (784)
Q Consensus       504 ~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspd--g~~Latgs~Dg~I~IWdl~~~  581 (784)
                      -+-+.+|..+.|+.|++.||||+.+|.++||+..+...+.++.+|...|.++.|+|.  +..+|||+.||+|++|++++.
T Consensus       172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e  251 (459)
T KOG0272|consen  172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE  251 (459)
T ss_pred             ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence            456788999999999999999999999999999999999999999999999999995  668999999999999999986


Q ss_pred             cceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEe---ecCCeeEEEEecCCCEEEEEECCCcEEE
Q 047260          582 NFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHI---TKGGTAQVRFQPRIGQLLAAASDKVVSI  658 (784)
Q Consensus       582 ~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~---~~~~v~~v~fsp~~~~Ll~~s~Dg~I~I  658 (784)
                      . .+..+.+|...|..++|+|+|. +|.+++.|.+-++||+++...+..   +..+|.+++|+++|..+++|+.|..-+|
T Consensus       252 ~-~l~~l~gH~~RVs~VafHPsG~-~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~Rv  329 (459)
T KOG0272|consen  252 T-PLQDLEGHLARVSRVAFHPSGK-FLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRV  329 (459)
T ss_pred             c-chhhhhcchhhheeeeecCCCc-eeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhhe
Confidence            5 7788999999999999999998 888999999999999998776544   4467899999999999999999999999


Q ss_pred             EECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEec-CCCEEEEEECC
Q 047260          659 FDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHP-SYSTLLVVGGI  736 (784)
Q Consensus       659 wDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fsp-dg~~L~s~s~d  736 (784)
                      ||+++++++..+.+|...|.+|.|+|+|..|++|+.| +++|||++...++.++..|.+-|..+.|+| .|.+|++++.|
T Consensus       330 WDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD  409 (459)
T KOG0272|consen  330 WDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYD  409 (459)
T ss_pred             eecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccC
Confidence            9999999999999999999999999999999999965 999999999999999999999999999998 77889999999


Q ss_pred             CeEEEEECCCCceE-EecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          737 SSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       737 g~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      ++++||...+..++ .+.+|++.|.++++++|+.+|+|++.|.++++|.
T Consensus       410 ~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  410 NTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             cceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence            99999999999988 7889999999999999999999999999999994

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=2.5e-37  Score=309.51  Aligned_cols=289  Identities=18%  Similarity=0.320  Sum_probs=266.1

Q ss_pred             CcceeEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeE
Q 047260          494 GFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSV  573 (784)
Q Consensus       494 ~~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I  573 (784)
                      ...+...++|++|.++|.++.|++|.++|++++.||++.|||.-+...+..++-....|..++|+|.++++|+|+-|..+
T Consensus        42 ~i~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~C  121 (343)
T KOG0286|consen   42 RIQMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKC  121 (343)
T ss_pred             eeeeeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCcee
Confidence            35566778999999999999999999999999999999999999988888888889999999999999999999999999


Q ss_pred             EEEcCCCC--c---ceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEec-CC
Q 047260          574 RLWDAANP--N---FCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQP-RI  644 (784)
Q Consensus       574 ~IWdl~~~--~---~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp-~~  644 (784)
                      .||++.+.  +   ...+.+.+|.+.+.|+.|.+|+  .|++++.|.++.+||++++..+..+.   +.|.++.+.| ++
T Consensus       122 siy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~--~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~  199 (343)
T KOG0286|consen  122 SIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN--HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDG  199 (343)
T ss_pred             EEEecccccccccceeeeeecCccceeEEEEEcCCC--ceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCC
Confidence            99999854  2   3566788999999999999865  58889999999999999998887766   5688899999 89


Q ss_pred             CEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccC--CCceEEE
Q 047260          645 GQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSN--GNQFHSC  721 (784)
Q Consensus       645 ~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~--~~~I~sl  721 (784)
                      +.+++|+.|+..++||++.+.++..|.+|...|++|+|.|+|.-|++|+|| +.++||++....+..+...  ...|+++
T Consensus       200 ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv  279 (343)
T KOG0286|consen  200 NTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSV  279 (343)
T ss_pred             CeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeE
Confidence            999999999999999999999999999999999999999999999999988 9999999999888877643  4679999


Q ss_pred             EEecCCCEEEEEECCCeEEEEECCCCceE-EecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          722 VFHPSYSTLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       722 ~fspdg~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      +|+..|++|++|..|.++.+||.-.++.. .+.+|+.+|++|..+|||..|+||++|..||||.
T Consensus       280 ~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  280 AFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             EEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            99999999999999999999998888777 8889999999999999999999999999999994

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.5e-38  Score=331.60  Aligned_cols=279  Identities=23%  Similarity=0.358  Sum_probs=254.0

Q ss_pred             CCCCcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEE
Q 047260          436 GTGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHF  515 (784)
Q Consensus       436 ~~~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~f  515 (784)
                      +....++...|..++..++ +|||+|.+++|.+...                          ..+.+|++|.+.|.++.|
T Consensus       173 gd~rPis~~~fS~ds~~la-T~swsG~~kvW~~~~~--------------------------~~~~~l~gH~~~v~~~~f  225 (459)
T KOG0272|consen  173 GDTRPISGCSFSRDSKHLA-TGSWSGLVKVWSVPQC--------------------------NLLQTLRGHTSRVGAAVF  225 (459)
T ss_pred             cCCCcceeeEeecCCCeEE-EeecCCceeEeecCCc--------------------------ceeEEEeccccceeeEEE
Confidence            3334455556666666555 7999999999966322                          467889999999999999


Q ss_pred             cCC--CCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCC
Q 047260          516 SSD--GKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSS  593 (784)
Q Consensus       516 spd--g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~  593 (784)
                      +|.  +..||||+.||+|++|++++..++..+.+|...|..++|+|+|++|+|+|.|.+-++||++++. ......||..
T Consensus       226 hP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~-ElL~QEGHs~  304 (459)
T KOG0272|consen  226 HPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKS-ELLLQEGHSK  304 (459)
T ss_pred             ccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccch-hhHhhccccc
Confidence            996  6689999999999999999999999999999999999999999999999999999999999976 5556789999


Q ss_pred             CeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecC---CeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEE
Q 047260          594 PIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKG---GTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSL  670 (784)
Q Consensus       594 ~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~---~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l  670 (784)
                      .|.+|+|+++|. ++++|+.|..-+|||++++.++..+.+   .|..|.|+|+|-.|++|+.|++++|||++..+.+..+
T Consensus       305 ~v~~iaf~~DGS-L~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~i  383 (459)
T KOG0272|consen  305 GVFSIAFQPDGS-LAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTI  383 (459)
T ss_pred             ccceeEecCCCc-eeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceec
Confidence            999999999998 999999999999999999999988774   5788999999999999999999999999999999999


Q ss_pred             eCCCCCEEEEEEcC-CCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEE
Q 047260          671 QGHAELVNYICWDT-NGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWN  743 (784)
Q Consensus       671 ~~h~~~V~sl~~sp-dg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwd  743 (784)
                      .+|...|+.|+|+| .|.+|++++-| +++||..+++.+++.+.+|.+.|.+|.+++++.+|++++.|.++++|.
T Consensus       384 pAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  384 PAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             ccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence            99999999999998 78899999955 999999999999999999999999999999999999999999999995

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-34  Score=289.04  Aligned_cols=283  Identities=20%  Similarity=0.365  Sum_probs=248.1

Q ss_pred             eEEeEeecCCCceEEEEEcCC-CCEEEEEeCCCeEEEEECC-----CCceeeecCCCCCCeEEEEEccCCCEEEEEeCCC
Q 047260          498 CEVGCIRSRNSKVTCCHFSSD-GKLLASSGHDRKVVLWNMD-----TLQTESTPEDHKSVVTDVRFRPNSSQLATASVDK  571 (784)
Q Consensus       498 ~~i~~l~~H~~~V~~l~fspd-g~~Lasgs~Dg~I~IWd~~-----t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg  571 (784)
                      ....++++|++.|+.++..+. ...|++++.|.+|.+|++.     .|..++.+++|...|..+..++||.+.++++.|+
T Consensus         6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~   85 (315)
T KOG0279|consen    6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDG   85 (315)
T ss_pred             eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccc
Confidence            355778999999999999986 5588999999999999875     4778899999999999999999999999999999


Q ss_pred             eEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec----CCeeEEEEecC--CC
Q 047260          572 SVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK----GGTAQVRFQPR--IG  645 (784)
Q Consensus       572 ~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~----~~v~~v~fsp~--~~  645 (784)
                      ++++||+.+++ ....|.+|...|.+++|+++.. .+++|+.|.+|++|++..........    +-|.|++|+|.  ..
T Consensus        86 ~lrlWDl~~g~-~t~~f~GH~~dVlsva~s~dn~-qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p  163 (315)
T KOG0279|consen   86 TLRLWDLATGE-STRRFVGHTKDVLSVAFSTDNR-QIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNP  163 (315)
T ss_pred             eEEEEEecCCc-EEEEEEecCCceEEEEecCCCc-eeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCc
Confidence            99999999985 7888999999999999999977 78899999999999998766555544    45899999998  67


Q ss_pred             EEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEe
Q 047260          646 QLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFH  724 (784)
Q Consensus       646 ~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fs  724 (784)
                      .|+.++.|++|++||+++.+....+.+|.+.++.+.++|||.++++|+.+ .+.+||++.++++..+ .+...|.+++|+
T Consensus       164 ~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl-~a~~~v~sl~fs  242 (315)
T KOG0279|consen  164 IIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL-EAFDIVNSLCFS  242 (315)
T ss_pred             EEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec-cCCCeEeeEEec
Confidence            88899999999999999999999999999999999999999999999966 9999999999998877 456899999999


Q ss_pred             cCCCEEEEEECCCeEEEEECCCCceEE-----eccc-----CCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          725 PSYSTLLVVGGISSLELWNMAENKSMT-----IAAH-----ENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       725 pdg~~L~s~s~dg~I~Iwdl~~~~~~~-----~~~h-----~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      |+.-.|+.+. +..|+|||+.++.++.     ..+.     .-...+++|++||..|++|-.|+.|++|.
T Consensus       243 pnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~q  311 (315)
T KOG0279|consen  243 PNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ  311 (315)
T ss_pred             CCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence            9975555544 4569999999987761     1122     33467789999999999999999999994

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=4.1e-35  Score=294.75  Aligned_cols=283  Identities=21%  Similarity=0.402  Sum_probs=259.0

Q ss_pred             EEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEEC-CCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEc
Q 047260          499 EVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNM-DTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWD  577 (784)
Q Consensus       499 ~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~-~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWd  577 (784)
                      .+..+.+|++.|.++.|+|+|.+||+|+.|..|.+|++ ...+....+++|++.|..+.|.+|++.|++++.|++|+.||
T Consensus        39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD  118 (338)
T KOG0265|consen   39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD  118 (338)
T ss_pred             hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence            44557889999999999999999999999999999995 45677788899999999999999999999999999999999


Q ss_pred             CCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEee--cCCeeEEEEecCCCEEEEEECCCc
Q 047260          578 AANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHIT--KGGTAQVRFQPRIGQLLAAASDKV  655 (784)
Q Consensus       578 l~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~--~~~v~~v~fsp~~~~Ll~~s~Dg~  655 (784)
                      +++++ ..+.+.+|..-|.++....-+..++++++.|+++++||++...++..+  +-.++++.|...+..+++|+-|+.
T Consensus       119 ~~tG~-~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~  197 (338)
T KOG0265|consen  119 AETGK-RIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDND  197 (338)
T ss_pred             cccce-eeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCc
Confidence            99988 778889999999999977778889999999999999999998888888  577899999999999999999999


Q ss_pred             EEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCC----ceEEEeccCC----CceEEEEEecC
Q 047260          656 VSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASG----ECIQELSSNG----NQFHSCVFHPS  726 (784)
Q Consensus       656 I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~----~~i~~l~~~~----~~I~sl~fspd  726 (784)
                      |++||++.....+.+.+|.+.|+.+..+++|.++.+-+-+ +|++||++..    +++..+.++.    .....|+|+|+
T Consensus       198 ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~  277 (338)
T KOG0265|consen  198 IKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPN  277 (338)
T ss_pred             eeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCC
Confidence            9999999999999999999999999999999999998854 9999999853    5677777653    34578999999


Q ss_pred             CCEEEEEECCCeEEEEECCCCceE-EecccCCceEEEEEeCCCCEEEEEECCCcEEE
Q 047260          727 YSTLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKL  782 (784)
Q Consensus       727 g~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg~~LaSgs~DG~V~I  782 (784)
                      +..+-+++.|..+++||......+ .+.+|.+.|+++.|+|...+|.+++.|.+|.+
T Consensus       278 ~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l  334 (338)
T KOG0265|consen  278 GTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL  334 (338)
T ss_pred             CCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence            999999999999999999886655 88999999999999999999999999999876

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=4.2e-35  Score=299.65  Aligned_cols=287  Identities=22%  Similarity=0.365  Sum_probs=265.1

Q ss_pred             cceeEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEE
Q 047260          495 FTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVR  574 (784)
Q Consensus       495 ~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~  574 (784)
                      .+++..+.+.+|.+.|.|+++.|-..+|++|+.|++|+|||+.++++..++.+|...|..+++++...|+++++.|+.|+
T Consensus       139 apwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VK  218 (460)
T KOG0285|consen  139 APWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVK  218 (460)
T ss_pred             CcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeE
Confidence            45677888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEEEE
Q 047260          575 LWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLAAA  651 (784)
Q Consensus       575 IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~~s  651 (784)
                      .||++..+ +++.+.+|-+.|.|++.+|.-+ ++++|+.|..+++||+++...+..+.   .+|..+.+.|....+++++
T Consensus       219 CwDLe~nk-vIR~YhGHlS~V~~L~lhPTld-vl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S  296 (460)
T KOG0285|consen  219 CWDLEYNK-VIRHYHGHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGS  296 (460)
T ss_pred             EEechhhh-hHHHhccccceeEEEeccccce-eEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEec
Confidence            99999866 7888999999999999999865 88999999999999999877776655   6788899999999999999


Q ss_pred             CCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEE
Q 047260          652 SDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLL  731 (784)
Q Consensus       652 ~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~  731 (784)
                      .|++|++||++.++....+..|+..|.+++.+|....+++++.|.|+-|++..|+.+..+.+|...|+++....|+ +++
T Consensus       297 ~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~  375 (460)
T KOG0285|consen  297 HDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLV  375 (460)
T ss_pred             CCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhccccccceeeeeeeccCc-eEE
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999998876 688


Q ss_pred             EEECCCeEEEEECCCCceEEe---------cccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          732 VVGGISSLELWNMAENKSMTI---------AAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       732 s~s~dg~I~Iwdl~~~~~~~~---------~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      +|++.|.|.+||.+++.....         ...+..|.+.+|...+..|++|..|.+|++|+
T Consensus       376 ~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~k  437 (460)
T KOG0285|consen  376 SGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYK  437 (460)
T ss_pred             EcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEe
Confidence            999999999999999876521         12355789999999999999999999999995

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=2e-33  Score=292.82  Aligned_cols=282  Identities=28%  Similarity=0.546  Sum_probs=252.3

Q ss_pred             eEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCC
Q 047260          501 GCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAAN  580 (784)
Q Consensus       501 ~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~  580 (784)
                      ..+++|.+.|++++|+|++++|++++.||.|++|++.+++....+..|...+..+.|++++++|++++.||.|++||+.+
T Consensus         3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~   82 (289)
T cd00200           3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET   82 (289)
T ss_pred             hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence            45678999999999999999999999999999999999888888889999999999999999999999999999999997


Q ss_pred             CcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEEEECCCcEE
Q 047260          581 PNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLAAASDKVVS  657 (784)
Q Consensus       581 ~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~~s~Dg~I~  657 (784)
                      .+ ....+..|...|.++.|++++. ++++++.++.|++||+++.+....+.   ..+.++.|+|++..+++++.++.|+
T Consensus        83 ~~-~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~  160 (289)
T cd00200          83 GE-CVRTLTGHTSYVSSVAFSPDGR-ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIK  160 (289)
T ss_pred             cc-ceEEEeccCCcEEEEEEcCCCC-EEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEE
Confidence            65 5566678888999999999854 77777789999999999766655543   5689999999988777777799999


Q ss_pred             EEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECC
Q 047260          658 IFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVS-QNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGI  736 (784)
Q Consensus       658 IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgs-dd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~d  736 (784)
                      +||+++++.+..+..|...|.+++|+|+++.+++++ ++.|++||++.++.+..+..+...+.++.|+|++.++++++.+
T Consensus       161 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  240 (289)
T cd00200         161 LWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSED  240 (289)
T ss_pred             EEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCC
Confidence            999999998989998999999999999998887777 5599999999999999988888899999999998888887779


Q ss_pred             CeEEEEECCCCceE-EecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          737 SSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       737 g~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      +.|++||+.+++.. .+..|...|.+++|++++.+|++++.||.|++||
T Consensus       241 ~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         241 GTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             CcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            99999999987765 5668889999999999999999999999999997

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.8e-35  Score=299.95  Aligned_cols=287  Identities=25%  Similarity=0.442  Sum_probs=268.5

Q ss_pred             eeEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEE
Q 047260          497 FCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLW  576 (784)
Q Consensus       497 ~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IW  576 (784)
                      +.+...+.+|...|+.+-|+|+-..+++++.|++|++||..+++....+++|...|.+|+|+..|++|++++.|=.+++|
T Consensus        98 p~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LW  177 (406)
T KOG0295|consen   98 PNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLW  177 (406)
T ss_pred             CCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhhe
Confidence            45667788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCC---eeEEEEecCCCEEEEEECC
Q 047260          577 DAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGG---TAQVRFQPRIGQLLAAASD  653 (784)
Q Consensus       577 dl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~---v~~v~fsp~~~~Ll~~s~D  653 (784)
                      |..+...+.+...+|...|.+++|-|.+. .+++|+.|..|+.|++.++.|+..+.++   +..++.+.||..+++++.|
T Consensus       178 d~~~~~~c~ks~~gh~h~vS~V~f~P~gd-~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~d  256 (406)
T KOG0295|consen  178 DFDTFFRCIKSLIGHEHGVSSVFFLPLGD-HILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSND  256 (406)
T ss_pred             eHHHHHHHHHHhcCcccceeeEEEEecCC-eeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCC
Confidence            99986668888899999999999999985 8889999999999999999999888754   6778899999999999999


Q ss_pred             CcEEEEECCCCeEEEEEeCCCCCEEEEEEcCC---------------CCEEEEEeCC-eEEEEeCCCCceEEEeccCCCc
Q 047260          654 KVVSIFDIETDRQTHSLQGHAELVNYICWDTN---------------GDYLASVSQN-LVKVWSMASGECIQELSSNGNQ  717 (784)
Q Consensus       654 g~I~IwDl~t~~~i~~l~~h~~~V~sl~~spd---------------g~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~  717 (784)
                      .+|++|-+.++.+...+..|..+|.|++|.|.               +.++++++.| +|++||+.++.|+.++.+|.+.
T Consensus       257 qtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnw  336 (406)
T KOG0295|consen  257 QTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNW  336 (406)
T ss_pred             ceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccce
Confidence            99999999999888899999999999999763               2488888866 9999999999999999999999


Q ss_pred             eEEEEEecCCCEEEEEECCCeEEEEECCCCceE-EecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          718 FHSCVFHPSYSTLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       718 I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      |..++|+|.|+||+++.+|++|++||+.+..++ .+..|+..|+++.|+.+..+++||+-|..+++|+
T Consensus       337 Vr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE  404 (406)
T KOG0295|consen  337 VRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  404 (406)
T ss_pred             eeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence            999999999999999999999999999999998 7779999999999999999999999999999995

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=7e-34  Score=300.06  Aligned_cols=321  Identities=22%  Similarity=0.310  Sum_probs=270.0

Q ss_pred             cCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCCCEEEEEeC
Q 047260          448 EDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGH  527 (784)
Q Consensus       448 ~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~  527 (784)
                      +..+.++++|+.|...++|...+....-.....++    |+.        .+-..--..+..|++++|+.+|.+||+|+.
T Consensus       188 P~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lr----h~~--------~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~  255 (524)
T KOG0273|consen  188 PLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLR----HCI--------REGGKSVPSNKDVTSLDWNNDGTLLATGSE  255 (524)
T ss_pred             chhhhhhhccCCccceeeeeehhhccccchhhhhh----hhh--------hhhcccCCccCCcceEEecCCCCeEEEeec
Confidence            45566788999999999998765110000000000    000        000000113567999999999999999999


Q ss_pred             CCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcE
Q 047260          528 DRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDL  607 (784)
Q Consensus       528 Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~l  607 (784)
                      ||.++||+.. +..+.++..|+++|.++.|+.+|+||++++.|+++.+||..++. ....+.-|..+-..|.|-.+.  -
T Consensus       256 ~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~-~~q~f~~~s~~~lDVdW~~~~--~  331 (524)
T KOG0273|consen  256 DGEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGT-VKQQFEFHSAPALDVDWQSND--E  331 (524)
T ss_pred             CcEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCce-EEEeeeeccCCccceEEecCc--e
Confidence            9999999976 78888999999999999999999999999999999999998876 667777888887889997665  5


Q ss_pred             EEEEeCCCeEEEEeCCCCe---eEEeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcC
Q 047260          608 FCFCDNDNEIQYWSINPFL---CTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDT  684 (784)
Q Consensus       608 l~sgs~dg~I~iwDl~~~~---~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~sp  684 (784)
                      |++++.|+.|+|+.+....   .+..|.+.|.++.|+|.+..|++++.|++++||........+.+.+|...|..+.|+|
T Consensus       332 F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp  411 (524)
T KOG0273|consen  332 FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSP  411 (524)
T ss_pred             EeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecC
Confidence            8899999999999987543   3344668899999999999999999999999999999999999999999999999999


Q ss_pred             CCC---------EEEEEe-CCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceEEecc
Q 047260          685 NGD---------YLASVS-QNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIAA  754 (784)
Q Consensus       685 dg~---------~Lasgs-dd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~~~  754 (784)
                      .|.         .+++++ +.+|++||+..+.++++|..|..+|++++|+|+++++++|+.||.|.||++.+++.+....
T Consensus       412 ~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~  491 (524)
T KOG0273|consen  412 TGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQ  491 (524)
T ss_pred             CCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeec
Confidence            653         456655 5599999999999999999999999999999999999999999999999999999998888


Q ss_pred             cCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          755 HENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       755 h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      ..+.|..|+|+.+|.+|..+-.||.|++-|
T Consensus       492 ~~~~Ifel~Wn~~G~kl~~~~sd~~vcvld  521 (524)
T KOG0273|consen  492 GTGGIFELCWNAAGDKLGACASDGSVCVLD  521 (524)
T ss_pred             CCCeEEEEEEcCCCCEEEEEecCCCceEEE
Confidence            888899999999999999999999998754

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.8e-33  Score=275.99  Aligned_cols=287  Identities=22%  Similarity=0.339  Sum_probs=248.2

Q ss_pred             CCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCCCEEEEEeCC
Q 047260          449 DIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHD  528 (784)
Q Consensus       449 ~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~D  528 (784)
                      +..-+|.+.++|-+|+.|....+.                          +.+++...++.|+.+.+.||+++||+++. 
T Consensus         8 d~~viLvsA~YDhTIRfWqa~tG~--------------------------C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-   60 (311)
T KOG0315|consen    8 DDPVILVSAGYDHTIRFWQALTGI--------------------------CSRTIQHPDSQVNRLEITPDKKDLAAAGN-   60 (311)
T ss_pred             CCceEEEeccCcceeeeeehhcCe--------------------------EEEEEecCccceeeEEEcCCcchhhhccC-
Confidence            355677789999999999775443                          56667777889999999999999998875 


Q ss_pred             CeEEEEECCCCc--eeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCc
Q 047260          529 RKVVLWNMDTLQ--TESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTD  606 (784)
Q Consensus       529 g~I~IWd~~t~~--~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~  606 (784)
                      -.|++||+.+.+  ++.++.+|...|+.+.|..+|+.++||++||+++|||++... +.+ ...|.++|.++..+|+.. 
T Consensus        61 qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~-~qR-~~~~~spVn~vvlhpnQt-  137 (311)
T KOG0315|consen   61 QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLS-CQR-NYQHNSPVNTVVLHPNQT-  137 (311)
T ss_pred             CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcc-cch-hccCCCCcceEEecCCcc-
Confidence            569999998765  588999999999999999999999999999999999999844 444 445779999999999876 


Q ss_pred             EEEEEeCCCeEEEEeCCCCeeEEee----cCCeeEEEEecCCCEEEEEECCCcEEEEECCCC------eEEEEEeCCCCC
Q 047260          607 LFCFCDNDNEIQYWSINPFLCTHIT----KGGTAQVRFQPRIGQLLAAASDKVVSIFDIETD------RQTHSLQGHAEL  676 (784)
Q Consensus       607 ll~sgs~dg~I~iwDl~~~~~~~~~----~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~------~~i~~l~~h~~~  676 (784)
                      -|++|+.+|.|++||+....+...+    ...+.++.+.|+|..++++...|..++|++-+.      +++..+..|.+.
T Consensus       138 eLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~  217 (311)
T KOG0315|consen  138 ELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGH  217 (311)
T ss_pred             eEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccce
Confidence            5668999999999999976555443    256889999999999999999999999998653      467778899999


Q ss_pred             EEEEEEcCCCCEEEEEeCC-eEEEEeCCCC-ceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE-Eec
Q 047260          677 VNYICWDTNGDYLASVSQN-LVKVWSMASG-ECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM-TIA  753 (784)
Q Consensus       677 V~sl~~spdg~~Lasgsdd-~I~IwDl~t~-~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~-~~~  753 (784)
                      +..+.++||+++|++++.+ +++||+..+. +....+.+|...+..|+|+.|+.||++++.|+.+++||+..++.+ ...
T Consensus       218 il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~  297 (311)
T KOG0315|consen  218 ILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQ  297 (311)
T ss_pred             EEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecC
Confidence            9999999999999999976 9999999988 666778899999999999999999999999999999999999877 667


Q ss_pred             ccCCceEEEEEe
Q 047260          754 AHENIISALAQS  765 (784)
Q Consensus       754 ~h~~~V~slafs  765 (784)
                      +|.....|++..
T Consensus       298 gh~K~~vc~~ln  309 (311)
T KOG0315|consen  298 GHHKAAVCVALN  309 (311)
T ss_pred             CcccccEEEEee
Confidence            887777777654

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=2.7e-35  Score=305.94  Aligned_cols=276  Identities=21%  Similarity=0.404  Sum_probs=246.4

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceee
Q 047260          507 NSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQ  586 (784)
Q Consensus       507 ~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~  586 (784)
                      +..|..+.|.|+|+.|++|+..|.+.+|+..+......+..|..+|.++.|++++.++++|+.+|.|++|+..-.. +..
T Consensus        96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn-Vk~  174 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN-VKI  174 (464)
T ss_pred             ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh-hHH
Confidence            4569999999999999999999999999998777777778999999999999999999999999999999987544 333


Q ss_pred             eccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEe---ecCCeeEEEEecCCCEEEEEECCCcEEEEECCC
Q 047260          587 AYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHI---TKGGTAQVRFQPRIGQLLAAASDKVVSIFDIET  663 (784)
Q Consensus       587 ~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~---~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t  663 (784)
                      ....|...|++++|+|++. .|++|++||.|+|||....+....   +.-.+.++.|+|....+++++.|..|++||.++
T Consensus       175 ~~ahh~eaIRdlafSpnDs-kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprS  253 (464)
T KOG0284|consen  175 IQAHHAEAIRDLAFSPNDS-KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRS  253 (464)
T ss_pred             hhHhhhhhhheeccCCCCc-eeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCC
Confidence            3344558999999999655 899999999999999986555444   445689999999999999999999999999999


Q ss_pred             CeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCC-CEEEEEECCCeEEE
Q 047260          664 DRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSY-STLLVVGGISSLEL  741 (784)
Q Consensus       664 ~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg-~~L~s~s~dg~I~I  741 (784)
                      +.++.++.+|+..|..+.|.+++.+|++++.| .++++|+++-+.+.++.+|...|+++.|+|-. ..|.+++.||.|..
T Consensus       254 g~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh  333 (464)
T KOG0284|consen  254 GSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVH  333 (464)
T ss_pred             cchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEE
Confidence            99999999999999999999999999999988 99999999999999999999999999999965 45777888999999


Q ss_pred             EECCCCceE--EecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          742 WNMAENKSM--TIAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       742 wdl~~~~~~--~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      |.+...+.+  .-.+|...|.+++|+|-|.+|++|+.|.++++|-
T Consensus       334 ~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~  378 (464)
T KOG0284|consen  334 WVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT  378 (464)
T ss_pred             EeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence            999855554  3458999999999999999999999999999993

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=9.1e-33  Score=314.36  Aligned_cols=284  Identities=26%  Similarity=0.494  Sum_probs=255.8

Q ss_pred             EeEeec-CCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--eeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEE
Q 047260          500 VGCIRS-RNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQ--TESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLW  576 (784)
Q Consensus       500 i~~l~~-H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~--~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IW  576 (784)
                      ...+.. |...|.|+.|+++|++|++++.|+.|++|+..+.+  ....+.+|...|.+++|+|+++++++++.|++|+||
T Consensus       151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriw  230 (456)
T KOG0266|consen  151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIW  230 (456)
T ss_pred             eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEe
Confidence            444544 48899999999999999999999999999998777  777788999999999999999999999999999999


Q ss_pred             cCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEEEECC
Q 047260          577 DAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLAAASD  653 (784)
Q Consensus       577 dl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~~s~D  653 (784)
                      |++....+.+++.+|...|++++|+|++ .++++|+.|+.|++||+++++++..+.   ..++.++|++++..|++++.|
T Consensus       231 d~~~~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d  309 (456)
T KOG0266|consen  231 DLKDDGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYD  309 (456)
T ss_pred             eccCCCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCC
Confidence            9966656889999999999999999999 799999999999999999988776655   678999999999999999999


Q ss_pred             CcEEEEECCCCe--EEEEEeCCCCC--EEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCc---eEEEEEec
Q 047260          654 KVVSIFDIETDR--QTHSLQGHAEL--VNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQ---FHSCVFHP  725 (784)
Q Consensus       654 g~I~IwDl~t~~--~i~~l~~h~~~--V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~---I~sl~fsp  725 (784)
                      +.|+|||+.++.  ++..+.++...  +++++|+|++.+|+++.+| .+++||+..+.++..+.+|...   +.+...++
T Consensus       310 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (456)
T KOG0266|consen  310 GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLST  389 (456)
T ss_pred             ccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccC
Confidence            999999999998  56777776655  9999999999999999987 9999999999999999988775   33445578


Q ss_pred             CCCEEEEEECCCeEEEEECCCCceE-Eeccc-CCceEEEEEeCCCCEEEEEE--CCCcEEEeC
Q 047260          726 SYSTLLVVGGISSLELWNMAENKSM-TIAAH-ENIISALAQSPVTGMVASAS--HDSSVKLWK  784 (784)
Q Consensus       726 dg~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h-~~~V~slafspdg~~LaSgs--~DG~V~IWd  784 (784)
                      .+.++++++.|+.|++||+.++..+ .+.+| ...|..+.|++..+++++++  .|+.|++|+
T Consensus       390 ~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~  452 (456)
T KOG0266|consen  390 GGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWK  452 (456)
T ss_pred             CCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEec
Confidence            8999999999999999999987666 77889 89999999999999999998  799999995

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=2.7e-33  Score=279.19  Aligned_cols=288  Identities=18%  Similarity=0.275  Sum_probs=242.9

Q ss_pred             CCCCcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEE
Q 047260          436 GTGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHF  515 (784)
Q Consensus       436 ~~~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~f  515 (784)
                      ++..-+.+....+....++..+|.|..+.+|....+.                     ...-..++.+++|...|..+..
T Consensus        13 gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd---------------------~~~G~~~r~~~GHsH~v~dv~~   71 (315)
T KOG0279|consen   13 GHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDD---------------------IKYGVPVRRLTGHSHFVSDVVL   71 (315)
T ss_pred             CCCceEEEEEeecCCCceEEEcccceEEEEEEeccCc---------------------cccCceeeeeeccceEecceEE
Confidence            3333444444445555566679999999999876542                     1112457889999999999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCe
Q 047260          516 SSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPI  595 (784)
Q Consensus       516 spdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V  595 (784)
                      ++||.+.++++.|+++++||+.+++....|.+|...|.+++|++|.+.|++|+.|++|++|++...-.....-..+.+-|
T Consensus        72 s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WV  151 (315)
T KOG0279|consen   72 SSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWV  151 (315)
T ss_pred             ccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcE
Confidence            99999999999999999999999999999999999999999999999999999999999999986432222222337899


Q ss_pred             EEEEEcCCC-CcEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEe
Q 047260          596 MSLDFHPKK-TDLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQ  671 (784)
Q Consensus       596 ~sl~~sp~~-~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~  671 (784)
                      .|+.|+|+. +.+|++++.|+.|++||+++.+....+.   +.++.+.++|||..+++|+.||.+.+||++.++.+..+.
T Consensus       152 scvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~  231 (315)
T KOG0279|consen  152 SCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE  231 (315)
T ss_pred             EEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc
Confidence            999999985 5689999999999999999877766554   568899999999999999999999999999999988776


Q ss_pred             CCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEEEeccC---------CCceEEEEEecCCCEEEEEECCCeEEEE
Q 047260          672 GHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELSSN---------GNQFHSCVFHPSYSTLLVVGGISSLELW  742 (784)
Q Consensus       672 ~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~~l~~~---------~~~I~sl~fspdg~~L~s~s~dg~I~Iw  742 (784)
                       |...|.+++|+|+...|+.+.+..|+|||+.++.++.++...         .....+++|+++|..|+++-.|+.|++|
T Consensus       232 -a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~  310 (315)
T KOG0279|consen  232 -AFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVW  310 (315)
T ss_pred             -CCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEE
Confidence             889999999999999998888889999999999888777532         2335778999999999999999999999


Q ss_pred             ECC
Q 047260          743 NMA  745 (784)
Q Consensus       743 dl~  745 (784)
                      .+.
T Consensus       311 qv~  313 (315)
T KOG0279|consen  311 QVA  313 (315)
T ss_pred             Eee
Confidence            875

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=4.5e-33  Score=273.27  Aligned_cols=263  Identities=19%  Similarity=0.378  Sum_probs=236.9

Q ss_pred             CEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcc-eeeeccCCCCCeEEE
Q 047260          520 KLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNF-CSQAYTGHSSPIMSL  598 (784)
Q Consensus       520 ~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~-~~~~~~~h~~~V~sl  598 (784)
                      -+|++++.|.+|++|...+|.+.+++....+.|+.+.+.|+++.||+++. -.||+||+++.+. ++..+.+|...|+++
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaV   89 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAV   89 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEE
Confidence            38999999999999999999999999888899999999999999999876 5799999998775 788899999999999


Q ss_pred             EEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEee--cCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeC-CCC
Q 047260          599 DFHPKKTDLFCFCDNDNEIQYWSINPFLCTHIT--KGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQG-HAE  675 (784)
Q Consensus       599 ~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~--~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~-h~~  675 (784)
                      .|..+|+ .+++|++||+++|||++...+-+.+  ..+|+++..+|+...|+++..+|.|++||+....+.+.+.. ...
T Consensus        90 gF~~dgr-WMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~  168 (311)
T KOG0315|consen   90 GFQCDGR-WMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDT  168 (311)
T ss_pred             EEeecCe-EEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCc
Confidence            9999987 7789999999999999987665544  48999999999999999999999999999998876666543 556


Q ss_pred             CEEEEEEcCCCCEEEEEeCC-eEEEEeCCCC------ceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCc
Q 047260          676 LVNYICWDTNGDYLASVSQN-LVKVWSMASG------ECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENK  748 (784)
Q Consensus       676 ~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~------~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~  748 (784)
                      .|.++...|||.+++.+.+. ..++|++-+.      +++.++..|...+..|.++|++++|++++.|.+++||+.++.-
T Consensus       169 ~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~  248 (311)
T KOG0315|consen  169 SIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFF  248 (311)
T ss_pred             ceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCce
Confidence            89999999999999988855 9999998764      4677788999999999999999999999999999999999872


Q ss_pred             e--EEecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          749 S--MTIAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       749 ~--~~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      .  +.+.+|...+..++||.|+.||++|+.|+.+++||
T Consensus       249 kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~  286 (311)
T KOG0315|consen  249 KLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWD  286 (311)
T ss_pred             eeEEEeecCCceEEeeeeccCccEEEecCCCCceeecc
Confidence            2  26789999999999999999999999999999997

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=3.2e-32  Score=290.60  Aligned_cols=290  Identities=20%  Similarity=0.363  Sum_probs=244.3

Q ss_pred             CCcceeEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecC---CCCCCeEEEEEccCCCEEEEEeC
Q 047260          493 KGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPE---DHKSVVTDVRFRPNSSQLATASV  569 (784)
Q Consensus       493 ~~~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~---~h~~~It~i~fspdg~~Latgs~  569 (784)
                      ++.+|+--.+++.|..-|.|+.|+|||.++|+++.||+|.|||=.+++.+..+.   +|.+.|.+|+|+||+..|+|++.
T Consensus       176 eGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~Sa  255 (603)
T KOG0318|consen  176 EGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSA  255 (603)
T ss_pred             eCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecC
Confidence            456677778889999999999999999999999999999999999999999997   89999999999999999999999


Q ss_pred             CCeEEEEcCCCCcc------------------------------------------eeeeccCCCCCeEEEEEcCCCCcE
Q 047260          570 DKSVRLWDAANPNF------------------------------------------CSQAYTGHSSPIMSLDFHPKKTDL  607 (784)
Q Consensus       570 Dg~I~IWdl~~~~~------------------------------------------~~~~~~~h~~~V~sl~~sp~~~~l  607 (784)
                      |.+++|||+.+.+.                                          +...+.+|...|+++..++++. .
T Consensus       256 Dkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~-~  334 (603)
T KOG0318|consen  256 DKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGK-T  334 (603)
T ss_pred             CceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCC-E
Confidence            99999999976431                                          1223568999999999999995 8


Q ss_pred             EEEEeCCCeEEEEeCCCCeeE-------------------------------Eee-------------------------
Q 047260          608 FCFCDNDNEIQYWSINPFLCT-------------------------------HIT-------------------------  631 (784)
Q Consensus       608 l~sgs~dg~I~iwDl~~~~~~-------------------------------~~~-------------------------  631 (784)
                      |++|+.||.|.-||+.++..-                               +..                         
T Consensus       335 i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~  414 (603)
T KOG0318|consen  335 IYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVL  414 (603)
T ss_pred             EEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEc
Confidence            889999999999987421000                               000                         


Q ss_pred             ----------------------------cCCeeEEEEecCCCEEEEEECCCcEEEEECCCCe--EEEEEeCCCCCEEEEE
Q 047260          632 ----------------------------KGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDR--QTHSLQGHAELVNYIC  681 (784)
Q Consensus       632 ----------------------------~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~--~i~~l~~h~~~V~sl~  681 (784)
                                                  .-...+++++|++..+++|+.|+.|+||.+....  ....+..|.++|++++
T Consensus       415 ~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~va  494 (603)
T KOG0318|consen  415 SDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVA  494 (603)
T ss_pred             CCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEE
Confidence                                        0123456789999999999999999999998754  3334566999999999


Q ss_pred             EcCCCCEEEEEeCC-eEEEEeCCCCceE-EEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE--EecccCC
Q 047260          682 WDTNGDYLASVSQN-LVKVWSMASGECI-QELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM--TIAAHEN  757 (784)
Q Consensus       682 ~spdg~~Lasgsdd-~I~IwDl~t~~~i-~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~--~~~~h~~  757 (784)
                      ++||+.||+++.-. .|.+||+.+.+.. ..+..|...|.+++|+|+..++++|+-|-.|.||+++.....  ...+|..
T Consensus       495 ySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~  574 (603)
T KOG0318|consen  495 YSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLG  574 (603)
T ss_pred             ECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEecccccc
Confidence            99999999999855 9999999988663 334458999999999999999999999999999999875443  4458988


Q ss_pred             ceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          758 IISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       758 ~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      .|+.+.|-. ...|++.+.|..|++|.
T Consensus       575 gVn~v~wld-e~tvvSsG~Da~iK~W~  600 (603)
T KOG0318|consen  575 GVNSVAWLD-ESTVVSSGQDANIKVWN  600 (603)
T ss_pred             CceeEEEec-CceEEeccCcceeEEec
Confidence            899999985 56889999999999995

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.2e-33  Score=289.52  Aligned_cols=289  Identities=16%  Similarity=0.297  Sum_probs=245.3

Q ss_pred             CcceeEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCC---CceeeecCCCCCCeEEEEEccCCCEEEEEeCC
Q 047260          494 GFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDT---LQTESTPEDHKSVVTDVRFRPNSSQLATASVD  570 (784)
Q Consensus       494 ~~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t---~~~~~~l~~h~~~It~i~fspdg~~Latgs~D  570 (784)
                      .+++.+...+..|++.|+-+.||++|+|||+++.|.+..||++..   .+..+++.+|..+|..|.|+||.++|++|+.|
T Consensus       211 qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~  290 (519)
T KOG0293|consen  211 QIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFD  290 (519)
T ss_pred             cCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCch
Confidence            356677888999999999999999999999999999999998754   45578889999999999999999999999999


Q ss_pred             CeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeE---EeecCCeeEEEEecCCCEE
Q 047260          571 KSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCT---HITKGGTAQVRFQPRIGQL  647 (784)
Q Consensus       571 g~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~---~~~~~~v~~v~fsp~~~~L  647 (784)
                      ..+++||+.++......-.++...+.+++|.||+. -+++|+.|+.|..||++....-   ......+.++++.+||+++
T Consensus       291 e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~-~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~v  369 (519)
T KOG0293|consen  291 EVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGF-RFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYV  369 (519)
T ss_pred             HheeeccCCcchhhhhcccCcCCCcceeEEccCCc-eeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEE
Confidence            99999999998844443345668899999999997 5778999999999999853321   1112468899999999999


Q ss_pred             EEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCc--eEEEEEe
Q 047260          648 LAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQ--FHSCVFH  724 (784)
Q Consensus       648 l~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~--I~sl~fs  724 (784)
                      ++.+.|..|++|+.++...+..+. ...+|++++.+.+++++.+.-.+ .|.+||+...+.+..+.+|...  +..-+|-
T Consensus       370 l~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFg  448 (519)
T KOG0293|consen  370 LLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFG  448 (519)
T ss_pred             EEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccC
Confidence            999999999999998765554333 56789999999999998887755 9999999988889999888543  3333443


Q ss_pred             -cCCCEEEEEECCCeEEEEECCCCceE-EecccCCceEEEEEeCCC-CEEEEEECCCcEEEeC
Q 047260          725 -PSYSTLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVT-GMVASASHDSSVKLWK  784 (784)
Q Consensus       725 -pdg~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg-~~LaSgs~DG~V~IWd  784 (784)
                       .+..++++|+.|+.|+||+..+++.+ .+.+|...|++++|+|.. .++|+||+||+||||.
T Consensus       449 g~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg  511 (519)
T KOG0293|consen  449 GGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWG  511 (519)
T ss_pred             CCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEec
Confidence             45578999999999999999999988 888999999999999965 4899999999999994

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=2.3e-31  Score=264.35  Aligned_cols=281  Identities=21%  Similarity=0.428  Sum_probs=238.5

Q ss_pred             eeEEeEeecCCCceEEEEEcCC-CCEEEEEeCCCeEEEEECCC---Cceeeec-CCCCCCeEEEEEccCCCEEEEEeCCC
Q 047260          497 FCEVGCIRSRNSKVTCCHFSSD-GKLLASSGHDRKVVLWNMDT---LQTESTP-EDHKSVVTDVRFRPNSSQLATASVDK  571 (784)
Q Consensus       497 ~~~i~~l~~H~~~V~~l~fspd-g~~Lasgs~Dg~I~IWd~~t---~~~~~~l-~~h~~~It~i~fspdg~~Latgs~Dg  571 (784)
                      +..+..+.+|.++|..++|+|- |..||+|+.|+.|+||+...   ..+...+ .+|+..|..++|+|.|++|+++|.|.
T Consensus         4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~   83 (312)
T KOG0645|consen    4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA   83 (312)
T ss_pred             ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence            4567889999999999999997 88999999999999999984   3444334 47999999999999999999999999


Q ss_pred             eEEEEcCCCCc-ceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCC---CeeEEeec---CCeeEEEEecCC
Q 047260          572 SVRLWDAANPN-FCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINP---FLCTHITK---GGTAQVRFQPRI  644 (784)
Q Consensus       572 ~I~IWdl~~~~-~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~---~~~~~~~~---~~v~~v~fsp~~  644 (784)
                      ++.||.-..+. .+..++.||..+|.|++|+++|. +|++|+.|..|.||.+..   ..|...+.   ..|..+.|+|..
T Consensus        84 t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~-~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~  162 (312)
T KOG0645|consen   84 TVVIWKKEDGEFECVATLEGHENEVKCVAWSASGN-YLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTE  162 (312)
T ss_pred             eEEEeecCCCceeEEeeeeccccceeEEEEcCCCC-EEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCc
Confidence            99999866543 47788999999999999999987 899999999999999873   44554444   567888999999


Q ss_pred             CEEEEEECCCcEEEEECCC---CeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEE
Q 047260          645 GQLLAAASDKVVSIFDIET---DRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHS  720 (784)
Q Consensus       645 ~~Ll~~s~Dg~I~IwDl~t---~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~s  720 (784)
                      ..|++++.|++|++|+-..   -.++.++.+|...|.+++|++.|..|++++++ +|+||-..+.-    -..|...++.
T Consensus       163 dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~----~~~~sr~~Y~  238 (312)
T KOG0645|consen  163 DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL----SGMHSRALYD  238 (312)
T ss_pred             ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc----chhcccceEe
Confidence            9999999999999998762   37889999999999999999999999999988 99999866321    1235678899


Q ss_pred             EEEecCCCEEEEEECCCeEEEEECCCCc---eE-----EecccCCceEEEEEeCC-CCEEEEEECCCcEEEeC
Q 047260          721 CVFHPSYSTLLVVGGISSLELWNMAENK---SM-----TIAAHENIISALAQSPV-TGMVASASHDSSVKLWK  784 (784)
Q Consensus       721 l~fspdg~~L~s~s~dg~I~Iwdl~~~~---~~-----~~~~h~~~V~slafspd-g~~LaSgs~DG~V~IWd  784 (784)
                      +.|.  ...|++++.|+.|++|......   ..     ....|...|+++.|.|. .++|++|++||.|++|.
T Consensus       239 v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~  309 (312)
T KOG0645|consen  239 VPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWE  309 (312)
T ss_pred             eeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEE
Confidence            9998  4479999999999999766431   11     23478999999999995 67999999999999994

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=5e-32  Score=286.09  Aligned_cols=280  Identities=24%  Similarity=0.419  Sum_probs=244.7

Q ss_pred             EeEeecCCCceEEEEEcCCCC-EEEEEeCCCeEEEEECCC----CceeeecC----------CCCCCeEEEEEccCCCEE
Q 047260          500 VGCIRSRNSKVTCCHFSSDGK-LLASSGHDRKVVLWNMDT----LQTESTPE----------DHKSVVTDVRFRPNSSQL  564 (784)
Q Consensus       500 i~~l~~H~~~V~~l~fspdg~-~Lasgs~Dg~I~IWd~~t----~~~~~~l~----------~h~~~It~i~fspdg~~L  564 (784)
                      ++.+. |+.+|.+++|+|-.. .|++|+.|-..++|++..    +.....++          .....|++++|+.+|..|
T Consensus       172 ~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~L  250 (524)
T KOG0273|consen  172 AKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLL  250 (524)
T ss_pred             eeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeE
Confidence            44455 999999999999655 899999999999999874    11111111          123679999999999999


Q ss_pred             EEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEe
Q 047260          565 ATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQ  641 (784)
Q Consensus       565 atgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fs  641 (784)
                      |+|+.||.++||+....  ....+..|.++|.++.|+.+|. +|++++.|+++.+||..++.....+.   .+..+|.|.
T Consensus       251 atG~~~G~~riw~~~G~--l~~tl~~HkgPI~slKWnk~G~-yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~  327 (524)
T KOG0273|consen  251 ATGSEDGEARIWNKDGN--LISTLGQHKGPIFSLKWNKKGT-YILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQ  327 (524)
T ss_pred             EEeecCcEEEEEecCch--hhhhhhccCCceEEEEEcCCCC-EEEeccCCccEEEEeccCceEEEeeeeccCCccceEEe
Confidence            99999999999998753  5778889999999999999987 67789999999999998877665544   333667887


Q ss_pred             cCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEE
Q 047260          642 PRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHS  720 (784)
Q Consensus       642 p~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~s  720 (784)
                      .+ ..+++++.|+.|+|+.+....++.++.+|.+.|.++.|+|.|.+|+++++| +++||......+...+..|...|+.
T Consensus       328 ~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t  406 (524)
T KOG0273|consen  328 SN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYT  406 (524)
T ss_pred             cC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceee
Confidence            65 568889999999999999999999999999999999999999999999988 9999999999999999999999999


Q ss_pred             EEEecCCC---------EEEEEECCCeEEEEECCCCceE-EecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          721 CVFHPSYS---------TLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       721 l~fspdg~---------~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      +.|+|++.         .+++++.|++|++||+..+.++ .+..|..+|.+|+|+|+++++|+|+.||.|.||+
T Consensus       407 ~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws  480 (524)
T KOG0273|consen  407 IKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWS  480 (524)
T ss_pred             EeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEecc
Confidence            99999764         6899999999999999999998 6779999999999999999999999999999995

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=2.4e-31  Score=266.56  Aligned_cols=279  Identities=21%  Similarity=0.344  Sum_probs=246.7

Q ss_pred             CCCCcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEE
Q 047260          436 GTGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHF  515 (784)
Q Consensus       436 ~~~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~f  515 (784)
                      |+..-+.+.....+..+++ .+|.|+.+.+|++....                          ++..+.-....|..|+|
T Consensus        53 GH~~Ki~~~~ws~Dsr~iv-SaSqDGklIvWDs~Ttn--------------------------K~haipl~s~WVMtCA~  105 (343)
T KOG0286|consen   53 GHLNKIYAMDWSTDSRRIV-SASQDGKLIVWDSFTTN--------------------------KVHAIPLPSSWVMTCAY  105 (343)
T ss_pred             ccccceeeeEecCCcCeEE-eeccCCeEEEEEccccc--------------------------ceeEEecCceeEEEEEE
Confidence            4444466677767777776 58899999999774433                          45556667888999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEECCCC------ceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeecc
Q 047260          516 SSDGKLLASSGHDRKVVLWNMDTL------QTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYT  589 (784)
Q Consensus       516 spdg~~Lasgs~Dg~I~IWd~~t~------~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~  589 (784)
                      +|.|+++|+|+-|+...||++.+.      ...+.+.+|++.+.|+.|..| ..|+|+|.|.++.+||++++. ....|.
T Consensus       106 sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~-~~~~f~  183 (343)
T KOG0286|consen  106 SPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQ-QTQVFH  183 (343)
T ss_pred             CCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccce-EEEEec
Confidence            999999999999999999999854      455678899999999999975 579999999999999999977 778899


Q ss_pred             CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEEEECCCcEEEEECCCCeE
Q 047260          590 GHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQ  666 (784)
Q Consensus       590 ~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~  666 (784)
                      +|.+.|.++++.|...+.|++|+.|+..++||++...+...+.   ..|+.|+|.|+|.-+++|+.|++.++||++....
T Consensus       184 GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~  263 (343)
T KOG0286|consen  184 GHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQE  263 (343)
T ss_pred             CCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcE
Confidence            9999999999999666799999999999999999998887776   5688999999999999999999999999999988


Q ss_pred             EEEEeC--CCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEE
Q 047260          667 THSLQG--HAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWN  743 (784)
Q Consensus       667 i~~l~~--h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwd  743 (784)
                      +..+..  ....|++++|+..|++|++|.++ .+.+||.-.++.+..+.+|++.|.++..+|||..+++++.|..|+||.
T Consensus       264 ~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  264 LAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             EeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            887763  34589999999999999998877 999999999999999999999999999999999999999999999994

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=4.9e-33  Score=294.95  Aligned_cols=285  Identities=20%  Similarity=0.353  Sum_probs=248.9

Q ss_pred             eEEeEeecCCCceEEEEEcC-CCCEEEEEeCCCeEEEEECCC-CceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEE
Q 047260          498 CEVGCIRSRNSKVTCCHFSS-DGKLLASSGHDRKVVLWNMDT-LQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRL  575 (784)
Q Consensus       498 ~~i~~l~~H~~~V~~l~fsp-dg~~Lasgs~Dg~I~IWd~~t-~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~I  575 (784)
                      ..+.++.+|+..|+++.|.| .+.+|++++.|+.|+||++.. +++++++.+|..+|.+++|+.+|..|++++.|+.|++
T Consensus       205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl  284 (503)
T KOG0282|consen  205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL  284 (503)
T ss_pred             hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence            46788999999999999999 899999999999999999976 8999999999999999999999999999999999999


Q ss_pred             EcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEEEEC
Q 047260          576 WDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLAAAS  652 (784)
Q Consensus       576 Wdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~~s~  652 (784)
                      ||++++.. ...+. ....++|+.|+|++.++|++|..|+.|+.||+++++.+....   +.+..+.|-+++.++++.+.
T Consensus       285 wDtETG~~-~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSD  362 (503)
T KOG0282|consen  285 WDTETGQV-LSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSD  362 (503)
T ss_pred             eccccceE-EEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeecc
Confidence            99999884 44333 245789999999998899999999999999999988776554   78899999999999999999


Q ss_pred             CCcEEEEECCCCeEEEEEeC-CCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCC---ceEEEeccCC--CceEEEEEec
Q 047260          653 DKVVSIFDIETDRQTHSLQG-HAELVNYICWDTNGDYLASVSQN-LVKVWSMASG---ECIQELSSNG--NQFHSCVFHP  725 (784)
Q Consensus       653 Dg~I~IwDl~t~~~i~~l~~-h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~---~~i~~l~~~~--~~I~sl~fsp  725 (784)
                      |+.++||+.+...++..+.. +.....|+..+|++.++++-+-+ .|.|+.+...   ...+.+.+|.  +.-..|.|+|
T Consensus       363 dks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSp  442 (503)
T KOG0282|consen  363 DKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSP  442 (503)
T ss_pred             CccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcC
Confidence            99999999998877665543 34467789999999999998854 9999987543   2234555653  4456789999


Q ss_pred             CCCEEEEEECCCeEEEEECCCCceE-EecccCCceEEEEEeCCC-CEEEEEECCCcEEEeC
Q 047260          726 SYSTLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVT-GMVASASHDSSVKLWK  784 (784)
Q Consensus       726 dg~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg-~~LaSgs~DG~V~IWd  784 (784)
                      ||.+|++|..||.+.+||.++-+.+ .+.+|+..+..+.|+|.. ..+|+|+.||.|++||
T Consensus       443 DG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  443 DGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             CCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence            9999999999999999999998887 788999999999999975 4899999999999997

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.1e-31  Score=296.41  Aligned_cols=287  Identities=23%  Similarity=0.374  Sum_probs=258.8

Q ss_pred             eeEEeEeecCCCceEEEEEc-CCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEE
Q 047260          497 FCEVGCIRSRNSKVTCCHFS-SDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRL  575 (784)
Q Consensus       497 ~~~i~~l~~H~~~V~~l~fs-pdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~I  575 (784)
                      +..++.+-|.++.|.+++|- |+..+||+++..+.+++|++.+..+. .+.+|++.|.++....+|.+|+||+.|+++++
T Consensus       313 l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svil  391 (775)
T KOG0319|consen  313 LTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVIL  391 (775)
T ss_pred             cEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEE
Confidence            34455667888999999975 46789999999999999998876665 78899999999996667889999999999999


Q ss_pred             EcCCCCc---ceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe------------eEEeecCCeeEEEE
Q 047260          576 WDAANPN---FCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFL------------CTHITKGGTAQVRF  640 (784)
Q Consensus       576 Wdl~~~~---~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~------------~~~~~~~~v~~v~f  640 (784)
                      |.++++.   .+.....+|...|.+++++..+..+|++++.|++|++|++...+            ....|...|+++++
T Consensus       392 Wr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vai  471 (775)
T KOG0319|consen  392 WRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAI  471 (775)
T ss_pred             EEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEe
Confidence            9885432   34556779999999999999899999999999999999997511            12335578999999


Q ss_pred             ecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceE
Q 047260          641 QPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFH  719 (784)
Q Consensus       641 sp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~  719 (784)
                      +|+...+++|+.|++.+||+++.......+.+|...|.||.|++....+++++.| +|+||.+.++.|+++|.+|...|.
T Consensus       472 a~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVl  551 (775)
T KOG0319|consen  472 APNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVL  551 (775)
T ss_pred             cCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeE
Confidence            9999999999999999999999999999999999999999999999999999976 999999999999999999999999


Q ss_pred             EEEEecCCCEEEEEECCCeEEEEECCCCceE-EecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          720 SCVFHPSYSTLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       720 sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      .+.|-.++..|++++.||-|++|++++++|. ++..|++.|++++.++...+++||+.||.|.+|+
T Consensus       552 ra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk  617 (775)
T KOG0319|consen  552 RASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK  617 (775)
T ss_pred             eeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence            9999999999999999999999999999998 8899999999999999999999999999999995

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=3.8e-31  Score=272.12  Aligned_cols=320  Identities=18%  Similarity=0.223  Sum_probs=274.0

Q ss_pred             CCCCCCcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEE
Q 047260          434 SEGTGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCC  513 (784)
Q Consensus       434 ~~~~~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l  513 (784)
                      .+.+....-+....| ..+++++|+-|+...+|....+.                          ....+.+|.+.|+|+
T Consensus        60 F~~H~~svFavsl~P-~~~l~aTGGgDD~AflW~~~~ge--------------------------~~~eltgHKDSVt~~  112 (399)
T KOG0296|consen   60 FDKHTDSVFAVSLHP-NNNLVATGGGDDLAFLWDISTGE--------------------------FAGELTGHKDSVTCC  112 (399)
T ss_pred             hhhcCCceEEEEeCC-CCceEEecCCCceEEEEEccCCc--------------------------ceeEecCCCCceEEE
Confidence            334444444555555 77888899999999999875543                          345678899999999


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCC
Q 047260          514 HFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSS  593 (784)
Q Consensus       514 ~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~  593 (784)
                      .|+.||.+||||+.+|.|+||+..++.....+...-..|.-+.|+|.+.+|+.|+.||.|-+|.+.+.. ..+.+.+|..
T Consensus       113 ~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~-~~kv~~Gh~~  191 (399)
T KOG0296|consen  113 SFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA-LCKVMSGHNS  191 (399)
T ss_pred             EEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcc-eeeEecCCCC
Confidence            999999999999999999999999999988887677889999999999999999999999999999864 6788999999


Q ss_pred             CeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec----CCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEE
Q 047260          594 PIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK----GGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHS  669 (784)
Q Consensus       594 ~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~----~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~  669 (784)
                      ++++=.|.|+|+ .++++..||+|++|++.++..++...    ....++.++..+..++.|..++.+++....+++.+..
T Consensus       192 ~ct~G~f~pdGK-r~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~  270 (399)
T KOG0296|consen  192 PCTCGEFIPDGK-RILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNC  270 (399)
T ss_pred             CcccccccCCCc-eEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEe
Confidence            999999999987 67788899999999999988887766    4567888999999999999999999999999988877


Q ss_pred             Ee--------CCCCCEEEEEE---cCCCCEEEEEe-CCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCC
Q 047260          670 LQ--------GHAELVNYICW---DTNGDYLASVS-QNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGIS  737 (784)
Q Consensus       670 l~--------~h~~~V~sl~~---spdg~~Lasgs-dd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg  737 (784)
                      ..        .+...+.||.+   +..-.+.|+|+ +++|.|||+...+..+.+ .|...|..+.|.+ ..+|++++.+|
T Consensus       271 ~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c-~he~~V~~l~w~~-t~~l~t~c~~g  348 (399)
T KOG0296|consen  271 NNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC-EHEDGVTKLKWLN-TDYLLTACANG  348 (399)
T ss_pred             cCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheec-cCCCceEEEEEcC-cchheeeccCc
Confidence            76        34444555554   44556777777 669999999887665544 5677899999999 77999999999


Q ss_pred             eEEEEECCCCceE-EecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          738 SLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       738 ~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      .|+.||.+++.++ .+.+|...|.+++++|+.++++|+|.|++.+||+
T Consensus       349 ~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~  396 (399)
T KOG0296|consen  349 KVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFE  396 (399)
T ss_pred             eEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEe
Confidence            9999999999988 8889999999999999999999999999999985

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=7.7e-32  Score=300.99  Aligned_cols=273  Identities=25%  Similarity=0.441  Sum_probs=236.8

Q ss_pred             EeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC-------------------------------ceeeecCCC
Q 047260          500 VGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTL-------------------------------QTESTPEDH  548 (784)
Q Consensus       500 i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~-------------------------------~~~~~l~~h  548 (784)
                      +-++..-...|+|+.|++|+..||.|..|..|++|.+...                               ....++.+|
T Consensus       371 ~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH  450 (707)
T KOG0263|consen  371 MYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGH  450 (707)
T ss_pred             EEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecC
Confidence            3444445667999999999999999999999999988631                               122345689


Q ss_pred             CCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeE
Q 047260          549 KSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCT  628 (784)
Q Consensus       549 ~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~  628 (784)
                      .++|..+.|+|+.++|++||.|++||+|.+.+.. +...+.+|..+|+++.|+|.| ++|++++.|++-++|........
T Consensus       451 ~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s-~~V~y~GH~~PVwdV~F~P~G-yYFatas~D~tArLWs~d~~~Pl  528 (707)
T KOG0263|consen  451 SGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWS-CLVIYKGHLAPVWDVQFAPRG-YYFATASHDQTARLWSTDHNKPL  528 (707)
T ss_pred             CCceeeeeecccccceeeccCCcceeeeecccce-eEEEecCCCcceeeEEecCCc-eEEEecCCCceeeeeecccCCch
Confidence            9999999999999999999999999999999866 777888999999999999986 48999999999999999876666


Q ss_pred             Eeec---CCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCC
Q 047260          629 HITK---GGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMAS  704 (784)
Q Consensus       629 ~~~~---~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t  704 (784)
                      +++.   ..+.|+.|+|+..++++|+.|.+|++||+.+|..++.|.+|.++|.+++|+|+|++|++|+++ .|+|||+.+
T Consensus       529 RifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~  608 (707)
T KOG0263|consen  529 RIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLAN  608 (707)
T ss_pred             hhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCC
Confidence            6554   678899999999999999999999999999999999999999999999999999999999976 999999999


Q ss_pred             CceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE-------------------------EecccCCce
Q 047260          705 GECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM-------------------------TIAAHENII  759 (784)
Q Consensus       705 ~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~-------------------------~~~~h~~~V  759 (784)
                      ++.+..+.+|.+.|.++.|+.+|..|++++.|.+|++||+..-...                         .+..-..+|
T Consensus       609 ~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv  688 (707)
T KOG0263|consen  609 GSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNTPV  688 (707)
T ss_pred             CcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeeecCceE
Confidence            9999999999999999999999999999999999999998643221                         222334577


Q ss_pred             EEEEEeCCCCEEEEE
Q 047260          760 SALAQSPVTGMVASA  774 (784)
Q Consensus       760 ~slafspdg~~LaSg  774 (784)
                      .+|.|....-.|++|
T Consensus       689 ~~l~FtrrNl~L~~g  703 (707)
T KOG0263|consen  689 VGLHFTRRNLLLAVG  703 (707)
T ss_pred             EEEEEeccceeEEec
Confidence            888888765455544

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=1.8e-30  Score=315.74  Aligned_cols=279  Identities=17%  Similarity=0.320  Sum_probs=236.0

Q ss_pred             eecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC----c----eeeecCCCCCCeEEEEEcc-CCCEEEEEeCCCeE
Q 047260          503 IRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTL----Q----TESTPEDHKSVVTDVRFRP-NSSQLATASVDKSV  573 (784)
Q Consensus       503 l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~----~----~~~~l~~h~~~It~i~fsp-dg~~Latgs~Dg~I  573 (784)
                      +..|.+.|++++|+|+|++||+|+.|+.|+|||+...    .    ....+ .+...|.+++|++ ++.+|++++.||+|
T Consensus       479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~las~~~Dg~v  557 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL-ASRSKLSGICWNSYIKSQVASSNFEGVV  557 (793)
T ss_pred             ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe-cccCceeeEEeccCCCCEEEEEeCCCeE
Confidence            4569999999999999999999999999999997532    1    12223 2456899999998 57899999999999


Q ss_pred             EEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec--CCeeEEEEe-cCCCEEEEE
Q 047260          574 RLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK--GGTAQVRFQ-PRIGQLLAA  650 (784)
Q Consensus       574 ~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~--~~v~~v~fs-p~~~~Ll~~  650 (784)
                      +|||+.++. ....+.+|...|++++|+|....+|++|+.|+.|++||+++..++..+.  ..+.++.|. +++..|++|
T Consensus       558 ~lWd~~~~~-~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latg  636 (793)
T PLN00181        558 QVWDVARSQ-LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFG  636 (793)
T ss_pred             EEEECCCCe-EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEE
Confidence            999999866 5677889999999999998656689999999999999999877665543  567888885 568899999


Q ss_pred             ECCCcEEEEECCCCe-EEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCC------CceEEEeccCCCceEEEE
Q 047260          651 ASDKVVSIFDIETDR-QTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMAS------GECIQELSSNGNQFHSCV  722 (784)
Q Consensus       651 s~Dg~I~IwDl~t~~-~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t------~~~i~~l~~~~~~I~sl~  722 (784)
                      +.|+.|++||+++.+ .+..+.+|...|.++.|. ++.+|++++.| .|+|||++.      ..++..+.+|...+.++.
T Consensus       637 s~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~  715 (793)
T PLN00181        637 SADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVG  715 (793)
T ss_pred             eCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEE
Confidence            999999999998865 567788899999999997 67788887755 999999974      367889999999999999


Q ss_pred             EecCCCEEEEEECCCeEEEEECCCCceE--------------EecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          723 FHPSYSTLLVVGGISSLELWNMAENKSM--------------TIAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       723 fspdg~~L~s~s~dg~I~Iwdl~~~~~~--------------~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      |++++.+|++++.|+.|++|+.......              ....|...|.+++|++++.+|++|+.||.|+|||
T Consensus       716 ~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~  791 (793)
T PLN00181        716 LSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILE  791 (793)
T ss_pred             EcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEe
Confidence            9999999999999999999998655322              1133556799999999999999999999999997

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.4e-30  Score=287.57  Aligned_cols=287  Identities=17%  Similarity=0.339  Sum_probs=252.9

Q ss_pred             cceeEEeEeecCCCceEEEEEcCCCCEEEEEeCC-CeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeE
Q 047260          495 FTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHD-RKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSV  573 (784)
Q Consensus       495 ~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~D-g~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I  573 (784)
                      ..|..++.+.-...+|..++|+..|++||.|+.. |.+.||++.+...+....+|...|++++++|||.++|||+.||.|
T Consensus       295 P~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKV  374 (893)
T KOG0291|consen  295 PDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKV  374 (893)
T ss_pred             CCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcE
Confidence            3466788888888999999999999999998765 899999999988888999999999999999999999999999999


Q ss_pred             EEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCC----eeEEEEecCCCEEEE
Q 047260          574 RLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGG----TAQVRFQPRIGQLLA  649 (784)
Q Consensus       574 ~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~----v~~v~fsp~~~~Ll~  649 (784)
                      +|||...+. |..++..|++.|+.+.|+..+. .+++.+-||+|+.||+...++.+.+..+    ..|++..|.|..+++
T Consensus       375 KvWn~~Sgf-C~vTFteHts~Vt~v~f~~~g~-~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~A  452 (893)
T KOG0291|consen  375 KVWNTQSGF-CFVTFTEHTSGVTAVQFTARGN-VLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCA  452 (893)
T ss_pred             EEEeccCce-EEEEeccCCCceEEEEEEecCC-EEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEe
Confidence            999999866 8899999999999999999887 6777888999999999999988888743    478889999999999


Q ss_pred             EECC-CcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCc-eEEEeccCCCceEEEEEecC
Q 047260          650 AASD-KVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGE-CIQELSSNGNQFHSCVFHPS  726 (784)
Q Consensus       650 ~s~D-g~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~-~i~~l~~~~~~I~sl~fspd  726 (784)
                      |+.| -.|.+|++.+|+.+-.+.+|+++|.+++|+|++..|++++-| +|++||+-... .+.++ .....+..++|+|+
T Consensus       453 G~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl-~i~sdvl~vsfrPd  531 (893)
T KOG0291|consen  453 GAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETL-EIRSDVLAVSFRPD  531 (893)
T ss_pred             eccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeE-eeccceeEEEEcCC
Confidence            8887 579999999999999999999999999999999999999965 99999987653 33344 44577899999999


Q ss_pred             CCEEEEEECCCeEEEEECCCCceE-E----------------e----cccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          727 YSTLLVVGGISSLELWNMAENKSM-T----------------I----AAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       727 g~~L~s~s~dg~I~Iwdl~~~~~~-~----------------~----~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      |+.|++++.||.|.+||...+... .                +    ......++.|++++||.+|++|+....|+||+
T Consensus       532 G~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~  610 (893)
T KOG0291|consen  532 GKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYD  610 (893)
T ss_pred             CCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEE
Confidence            999999999999999998875433 1                1    11235789999999999999999999999985

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.98  E-value=3.8e-32  Score=276.76  Aligned_cols=269  Identities=17%  Similarity=0.396  Sum_probs=234.8

Q ss_pred             EeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCC
Q 047260          500 VGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAA  579 (784)
Q Consensus       500 i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~  579 (784)
                      +.+-......|.|+.+.  ...+++|..|.+|+|||.++..+...+.+|++.|.|+.|.  .+.|++|+.|.+|+|||+.
T Consensus       190 inc~Se~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~  265 (499)
T KOG0281|consen  190 INCRSENSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVN  265 (499)
T ss_pred             ecCCcccCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEecc
Confidence            33333456779999985  5579999999999999999999999999999999999995  6699999999999999999


Q ss_pred             CCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCee------EEeecCCeeEEEEecCCCEEEEEECC
Q 047260          580 NPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLC------THITKGGTAQVRFQPRIGQLLAAASD  653 (784)
Q Consensus       580 ~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~------~~~~~~~v~~v~fsp~~~~Ll~~s~D  653 (784)
                      +++ ++.++.+|...|..+.|+..   ++++|+.|..|.+||+.....      +..+...+..+.|+.  +++++++.|
T Consensus       266 tge-~l~tlihHceaVLhlrf~ng---~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--kyIVsASgD  339 (499)
T KOG0281|consen  266 TGE-PLNTLIHHCEAVLHLRFSNG---YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGD  339 (499)
T ss_pred             CCc-hhhHHhhhcceeEEEEEeCC---EEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--ceEEEecCC
Confidence            987 78889999999999999843   899999999999999986432      233446677777754  599999999


Q ss_pred             CcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEE
Q 047260          654 KVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLV  732 (784)
Q Consensus       654 g~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s  732 (784)
                      .+|++|++.+++.++++.+|...|.|+.+  .++++++|+.| +|++||+..|.|++.+.+|+.-|.++.|..  +.|++
T Consensus       340 RTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~--krIVS  415 (499)
T KOG0281|consen  340 RTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN--KRIVS  415 (499)
T ss_pred             ceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecC--ceeee
Confidence            99999999999999999999999998876  58999999866 999999999999999999999999999954  48999


Q ss_pred             EECCCeEEEEECCCCceE----------EecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          733 VGGISSLELWNMAENKSM----------TIAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       733 ~s~dg~I~Iwdl~~~~~~----------~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      |+.||+|+|||+..+.-.          ++..|.+.|..+.|.  ...|+++++|.+|.|||
T Consensus       416 GaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWd  475 (499)
T KOG0281|consen  416 GAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWD  475 (499)
T ss_pred             ccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEE
Confidence            999999999999875321          566899999999996  56799999999999997

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.98  E-value=1.4e-29  Score=270.55  Aligned_cols=284  Identities=19%  Similarity=0.310  Sum_probs=239.3

Q ss_pred             EEeEeecCCCceEEEEEcCCCC-EEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEc
Q 047260          499 EVGCIRSRNSKVTCCHFSSDGK-LLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWD  577 (784)
Q Consensus       499 ~i~~l~~H~~~V~~l~fspdg~-~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWd  577 (784)
                      .+..+.+|...|++|+|-|... +++||++|++|.+|+=...+...++..|...|.|+.|+|||.++++++.||.|.|||
T Consensus       139 SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyD  218 (603)
T KOG0318|consen  139 SVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYD  218 (603)
T ss_pred             ccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEc
Confidence            4677889999999999999776 699999999999999998999999999999999999999999999999999999999


Q ss_pred             CCCCcceeeecc---CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEee-----------------------
Q 047260          578 AANPNFCSQAYT---GHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHIT-----------------------  631 (784)
Q Consensus       578 l~~~~~~~~~~~---~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~-----------------------  631 (784)
                      =.+++ .+..+.   +|.+.|.+++|+||+. -|++++.|.+++|||+.+.+++..+                       
T Consensus       219 Gktge-~vg~l~~~~aHkGsIfalsWsPDs~-~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItV  296 (603)
T KOG0318|consen  219 GKTGE-KVGELEDSDAHKGSIFALSWSPDST-QFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITV  296 (603)
T ss_pred             CCCcc-EEEEecCCCCccccEEEEEECCCCc-eEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEE
Confidence            99887 444455   8999999999999987 6778899999999998654332221                       


Q ss_pred             -----------------------cCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEE-----------EEEe------
Q 047260          632 -----------------------KGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQT-----------HSLQ------  671 (784)
Q Consensus       632 -----------------------~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i-----------~~l~------  671 (784)
                                             ...|+++..++++.+|++++.||.|.-||..++..-           ..+.      
T Consensus       297 Sl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~  376 (603)
T KOG0318|consen  297 SLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGE  376 (603)
T ss_pred             EcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCc
Confidence                                   235788889999999999999999999998654211           0000      


Q ss_pred             ---------------------CC-------------------------------------------CCCEEEEEEcCCCC
Q 047260          672 ---------------------GH-------------------------------------------AELVNYICWDTNGD  687 (784)
Q Consensus       672 ---------------------~h-------------------------------------------~~~V~sl~~spdg~  687 (784)
                                           .+                                           .-...+++++|++.
T Consensus       377 ~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~  456 (603)
T KOG0318|consen  377 LFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGS  456 (603)
T ss_pred             EEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCC
Confidence                                 00                                           00124567889999


Q ss_pred             EEEEEeCC-eEEEEeCCCCce--EEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE--EecccCCceEEE
Q 047260          688 YLASVSQN-LVKVWSMASGEC--IQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM--TIAAHENIISAL  762 (784)
Q Consensus       688 ~Lasgsdd-~I~IwDl~t~~~--i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~--~~~~h~~~V~sl  762 (784)
                      ++++|++| .|+||.+..+..  ...+..|..+|++++|+||+.+|+++...+.+.+||+.+.+..  .+.-|...|.++
T Consensus       457 ~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~  536 (603)
T KOG0318|consen  457 EVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCV  536 (603)
T ss_pred             EEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEE
Confidence            99999866 999999987653  3345678999999999999999999999999999999998775  455799999999


Q ss_pred             EEeCCCCEEEEEECCCcEEEeC
Q 047260          763 AQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       763 afspdg~~LaSgs~DG~V~IWd  784 (784)
                      +|+|+..+||||+-|-+|.||+
T Consensus       537 aWsP~n~~vATGSlDt~Viiys  558 (603)
T KOG0318|consen  537 AWSPNNKLVATGSLDTNVIIYS  558 (603)
T ss_pred             EeCCCceEEEeccccceEEEEE
Confidence            9999999999999999999995

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.98  E-value=1.5e-29  Score=279.44  Aligned_cols=279  Identities=19%  Similarity=0.313  Sum_probs=253.7

Q ss_pred             ecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCC-CeEEEEcCCCCc
Q 047260          504 RSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVD-KSVRLWDAANPN  582 (784)
Q Consensus       504 ~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~D-g~I~IWdl~~~~  582 (784)
                      ......|+|++|++..+.||+|-..|...+|.+.....++.+.-....|..++|+..|.+|+.|+.. |.+-||+..+..
T Consensus       262 n~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEs  341 (893)
T KOG0291|consen  262 NQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSES  341 (893)
T ss_pred             cccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccc
Confidence            3344889999999999999999999999999999999999998888999999999999999998875 899999999866


Q ss_pred             ceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEEEECCCcEEEE
Q 047260          583 FCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLAAASDKVVSIF  659 (784)
Q Consensus       583 ~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~~s~Dg~I~Iw  659 (784)
                       .+....+|...+.+++++|||. ++++|++||.|+|||...+-|+..+.   ..++.+.|+..++.+++.+-||+|+.|
T Consensus       342 -YVlKQQgH~~~i~~l~YSpDgq-~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAw  419 (893)
T KOG0291|consen  342 -YVLKQQGHSDRITSLAYSPDGQ-LIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAW  419 (893)
T ss_pred             -eeeeccccccceeeEEECCCCc-EEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEee
Confidence             4555679999999999999998 88999999999999999999987766   678899999999999999999999999


Q ss_pred             ECCCCeEEEEEeCC-CCCEEEEEEcCCCCEEEEEeCC--eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECC
Q 047260          660 DIETDRQTHSLQGH-AELVNYICWDTNGDYLASVSQN--LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGI  736 (784)
Q Consensus       660 Dl~t~~~i~~l~~h-~~~V~sl~~spdg~~Lasgsdd--~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~d  736 (784)
                      |+...+..++|... .....|++.+|.|.++++|+.+  .|.||++.+|+.+..+.+|+++|.+++|+|++..|++++.|
T Consensus       420 DlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWD  499 (893)
T KOG0291|consen  420 DLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWD  499 (893)
T ss_pred             eecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEecccc
Confidence            99999999998753 3467889999999999999976  89999999999999999999999999999999999999999


Q ss_pred             CeEEEEECCCCc-eEEecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          737 SSLELWNMAENK-SMTIAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       737 g~I~Iwdl~~~~-~~~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      .+|++||+-... ......+...|.+++|+|||+-|+++..||.|.+||
T Consensus       500 kTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d  548 (893)
T KOG0291|consen  500 KTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFD  548 (893)
T ss_pred             ceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEE
Confidence            999999986653 345557778899999999999999999999999997

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.98  E-value=1.2e-30  Score=288.35  Aligned_cols=316  Identities=20%  Similarity=0.306  Sum_probs=262.5

Q ss_pred             ccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCCC
Q 047260          441 ASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGK  520 (784)
Q Consensus       441 ~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~  520 (784)
                      +-.+.|.+.. .++++|+.|+.+++|+....                          .....|++|.+.|.++.|+|+-.
T Consensus       108 vi~ma~~~~g-~LlAtggaD~~v~VWdi~~~--------------------------~~th~fkG~gGvVssl~F~~~~~  160 (775)
T KOG0319|consen  108 VITMAFDPTG-TLLATGGADGRVKVWDIKNG--------------------------YCTHSFKGHGGVVSSLLFHPHWN  160 (775)
T ss_pred             eEEEEEcCCC-ceEEeccccceEEEEEeeCC--------------------------EEEEEecCCCceEEEEEeCCccc
Confidence            3344555556 78889999999999988443                          25778999999999999999654


Q ss_pred             --EEEEEeCCCeEEEEECCCCc-eeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcc--------------
Q 047260          521 --LLASSGHDRKVVLWNMDTLQ-TESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNF--------------  583 (784)
Q Consensus       521 --~Lasgs~Dg~I~IWd~~t~~-~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~--------------  583 (784)
                        .|++|..|+.|++||+.+.. ++..+..|.+.|+++.|.+|+..+++++.|..|.|||+...+.              
T Consensus       161 ~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv  240 (775)
T KOG0319|consen  161 RWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVV  240 (775)
T ss_pred             hhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEE
Confidence              58999999999999999554 4788889999999999999999999999999999998741100              


Q ss_pred             --------------------------------------------------------------------------------
Q 047260          584 --------------------------------------------------------------------------------  583 (784)
Q Consensus       584 --------------------------------------------------------------------------------  583 (784)
                                                                                                      
T Consensus       241 ~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~iv  320 (775)
T KOG0319|consen  241 RLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIV  320 (775)
T ss_pred             EechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhc
Confidence                                                                                            


Q ss_pred             ------------------------------------eeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCee
Q 047260          584 ------------------------------------CSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLC  627 (784)
Q Consensus       584 ------------------------------------~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~  627 (784)
                                                          ....+.+|+..|.+++...+| .+|++|+.|..+++|.++...+
T Consensus       321 G~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g-~llat~sKD~svilWr~~~~~~  399 (775)
T KOG0319|consen  321 GYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSG-DLLATGSKDKSVILWRLNNNCS  399 (775)
T ss_pred             CCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccC-cEEEEecCCceEEEEEecCCcc
Confidence                                                000124677777777744444 5999999999999998854322


Q ss_pred             -------EEeecCCeeEEEEecCC-CEEEEEECCCcEEEEECCCCeE---EE------EEeCCCCCEEEEEEcCCCCEEE
Q 047260          628 -------THITKGGTAQVRFQPRI-GQLLAAASDKVVSIFDIETDRQ---TH------SLQGHAELVNYICWDTNGDYLA  690 (784)
Q Consensus       628 -------~~~~~~~v~~v~fsp~~-~~Ll~~s~Dg~I~IwDl~t~~~---i~------~l~~h~~~V~sl~~spdg~~La  690 (784)
                             ...+...+.+++++..+ ..|++++.|++|++|++...+.   ..      ....|...|+|++.+|+.++|+
T Consensus       400 ~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiA  479 (775)
T KOG0319|consen  400 KSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIA  479 (775)
T ss_pred             hhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEE
Confidence                   23455778888886655 4577888899999999976221   11      2236999999999999999999


Q ss_pred             EEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE-EecccCCceEEEEEeCCC
Q 047260          691 SVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVT  768 (784)
Q Consensus       691 sgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg  768 (784)
                      +|+.| +.+||++.....+.++.+|...|.++.|++....+++++.|++|+||.+.+..++ ++.+|...|..+.|-.++
T Consensus       480 T~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~  559 (775)
T KOG0319|consen  480 TGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNG  559 (775)
T ss_pred             ecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCC
Confidence            99977 9999999999999999999999999999999999999999999999999999999 788999999999999999


Q ss_pred             CEEEEEECCCcEEEeC
Q 047260          769 GMVASASHDSSVKLWK  784 (784)
Q Consensus       769 ~~LaSgs~DG~V~IWd  784 (784)
                      ..|+|++.||.|+||+
T Consensus       560 ~qliS~~adGliKlWn  575 (775)
T KOG0319|consen  560 KQLISAGADGLIKLWN  575 (775)
T ss_pred             cEEEeccCCCcEEEEe
Confidence            9999999999999996

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.98  E-value=7.4e-31  Score=293.14  Aligned_cols=274  Identities=21%  Similarity=0.351  Sum_probs=226.1

Q ss_pred             eeeeecCCCCCCcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccc-cCCC-----CccCCCCCCcceeEEe
Q 047260          428 TLMMNGSEGTGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTL-KHSP-----EHQKQPTKGFTFCEVG  501 (784)
Q Consensus       428 ~~~~~g~~~~~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~-~~~~-----~~~~~~~~~~~~~~i~  501 (784)
                      +..++....+....++..|.++.. +++.|-.|..|++|...... -+.+-... ....     .......+...-...+
T Consensus       368 Sic~YT~~nt~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~k-l~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~  445 (707)
T KOG0263|consen  368 SICMYTFHNTYQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKK-LKKLKDASDLSNIDTESADVDVDMLDDDSSGTSR  445 (707)
T ss_pred             cEEEEEEEEcCCcceeEeecCCcc-hhhccccccEEEEEecchhh-hccccchhhhccccccccchhhhhccccCCceeE
Confidence            344444444555566677766655 77789999999999775321 00100000 0000     0001111222233456


Q ss_pred             EeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCC
Q 047260          502 CIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANP  581 (784)
Q Consensus       502 ~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~  581 (784)
                      ++.+|.++|..+.|+|+.++|++++.|++||+|.+.+..++..+++|..+|+++.|+|.|-||||++.|++.++|..+..
T Consensus       446 ~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~  525 (707)
T KOG0263|consen  446 TLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHN  525 (707)
T ss_pred             EeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999875


Q ss_pred             cceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEEEECCCcEEE
Q 047260          582 NFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLAAASDKVVSI  658 (784)
Q Consensus       582 ~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~~s~Dg~I~I  658 (784)
                      . ..+++.+|-+.|.|+.|+|+.. ++++|+.|.+|++||+.++..++.+.   ++|.+++|+|+|.+|++|+.|+.|.+
T Consensus       526 ~-PlRifaghlsDV~cv~FHPNs~-Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~i  603 (707)
T KOG0263|consen  526 K-PLRIFAGHLSDVDCVSFHPNSN-YVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKI  603 (707)
T ss_pred             C-chhhhcccccccceEEECCccc-ccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEE
Confidence            5 8899999999999999999977 88899999999999999998888765   67899999999999999999999999


Q ss_pred             EECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCC
Q 047260          659 FDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASG  705 (784)
Q Consensus       659 wDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~  705 (784)
                      ||+.+++.+..+.+|.+.|.++.|+.+|.+||+++.| +|++||+..-
T Consensus       604 WDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  604 WDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             EEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence            9999999999999999999999999999999999966 9999998653

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.4e-30  Score=282.31  Aligned_cols=279  Identities=22%  Similarity=0.396  Sum_probs=254.5

Q ss_pred             EeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCC
Q 047260          502 CIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANP  581 (784)
Q Consensus       502 ~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~  581 (784)
                      .+..|..+|.|+.|+|...+++++-.+|.|.|||.++...++.+.....+|.+..|-...+++++|++|..|+||+..+.
T Consensus         8 k~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~   87 (794)
T KOG0276|consen    8 KFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTG   87 (794)
T ss_pred             HhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccc
Confidence            34558999999999999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             cceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCC-CeeEEeecCC---eeEEEEecCC-CEEEEEECCCcE
Q 047260          582 NFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINP-FLCTHITKGG---TAQVRFQPRI-GQLLAAASDKVV  656 (784)
Q Consensus       582 ~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~-~~~~~~~~~~---v~~v~fsp~~-~~Ll~~s~Dg~I  656 (784)
                      + .+..+..|.+-|.||+.||..+ +++++++|-.|++||.+. ..|...++++   |.+++|+|.. +.+++++-|++|
T Consensus        88 e-kV~~FeAH~DyIR~iavHPt~P-~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTV  165 (794)
T KOG0276|consen   88 E-KVKTFEAHSDYIRSIAVHPTLP-YVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTV  165 (794)
T ss_pred             e-eeEEeeccccceeeeeecCCCC-eEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccE
Confidence            7 6788999999999999999988 677889999999999985 5666666654   7889999965 568888889999


Q ss_pred             EEEECCCCeEEEEEeCCCCCEEEEEEcCCC--CEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEE
Q 047260          657 SIFDIETDRQTHSLQGHAELVNYICWDTNG--DYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVV  733 (784)
Q Consensus       657 ~IwDl~t~~~i~~l~~h~~~V~sl~~spdg--~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~  733 (784)
                      +||.+....+..++.+|...|+||++-+.|  .+|++|+|| +|+|||..+..|+.++.+|...|..+.|+|.-+.|++|
T Consensus       166 KVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisg  245 (794)
T KOG0276|consen  166 KVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISG  245 (794)
T ss_pred             EEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEe
Confidence            999999999999999999999999998755  599999998 99999999999999999999999999999999999999


Q ss_pred             ECCCeEEEEECCCCceE-EecccCCceEEEEEeCCCCEEEEEECCCcEEE
Q 047260          734 GGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKL  782 (784)
Q Consensus       734 s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg~~LaSgs~DG~V~I  782 (784)
                      +.||+++||+..+-+.. ++...-++|.||+-.+.++.++.|.++|.|.|
T Consensus       246 sEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v  295 (794)
T KOG0276|consen  246 SEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV  295 (794)
T ss_pred             cCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence            99999999999887766 55566788999999999999999999998764

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.97  E-value=1.4e-31  Score=278.33  Aligned_cols=273  Identities=22%  Similarity=0.383  Sum_probs=232.2

Q ss_pred             ccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCCCEE
Q 047260          443 ASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLL  522 (784)
Q Consensus       443 s~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~~L  522 (784)
                      .+.-.++..+++ +|+..|.+.+|..                          ..|.-...+.+|++.|+++.|+++|.++
T Consensus       101 ~v~WtPeGRRLl-tgs~SGEFtLWNg--------------------------~~fnFEtilQaHDs~Vr~m~ws~~g~wm  153 (464)
T KOG0284|consen  101 VVRWTPEGRRLL-TGSQSGEFTLWNG--------------------------TSFNFETILQAHDSPVRTMKWSHNGTWM  153 (464)
T ss_pred             eEEEcCCCceeE-eecccccEEEecC--------------------------ceeeHHHHhhhhcccceeEEEccCCCEE
Confidence            344456677777 5888888888844                          1122223467899999999999999999


Q ss_pred             EEEeCCCeEEEEECCCCceeeecC-CCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEc
Q 047260          523 ASSGHDRKVVLWNMDTLQTESTPE-DHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFH  601 (784)
Q Consensus       523 asgs~Dg~I~IWd~~t~~~~~~l~-~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~s  601 (784)
                      ++|+.+|.|++|+..-. .+..+. .|...|++++|+|+...|++|++||+|+|||....+ ....+.+|.-.|.+++|+
T Consensus       154 iSgD~gG~iKyWqpnmn-nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~k-ee~vL~GHgwdVksvdWH  231 (464)
T KOG0284|consen  154 ISGDKGGMIKYWQPNMN-NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPK-EERVLRGHGWDVKSVDWH  231 (464)
T ss_pred             EEcCCCceEEecccchh-hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCc-hhheeccCCCCcceeccC
Confidence            99999999999998743 344444 455999999999999999999999999999998766 456679999999999999


Q ss_pred             CCCCcEEEEEeCCCeEEEEeCCCCeeEE---eecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEE
Q 047260          602 PKKTDLFCFCDNDNEIQYWSINPFLCTH---ITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVN  678 (784)
Q Consensus       602 p~~~~ll~sgs~dg~I~iwDl~~~~~~~---~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~  678 (784)
                      |... ++++++.|..|++||.+++.|+.   .++..|..+.|++++++|++++.|..+++||+++.+.+..+++|+..|+
T Consensus       232 P~kg-LiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~  310 (464)
T KOG0284|consen  232 PTKG-LIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVT  310 (464)
T ss_pred             Cccc-eeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhhe
Confidence            9876 89999999999999999998875   4567889999999999999999999999999999999999999999999


Q ss_pred             EEEEcCCC-CEEEEEe-CCeEEEEeCCCCceEEEec-cCCCceEEEEEecCCCEEEEEECCCeEEEEECC
Q 047260          679 YICWDTNG-DYLASVS-QNLVKVWSMASGECIQELS-SNGNQFHSCVFHPSYSTLLVVGGISSLELWNMA  745 (784)
Q Consensus       679 sl~~spdg-~~Lasgs-dd~I~IwDl~t~~~i~~l~-~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~  745 (784)
                      ++.|+|-. .+|++++ |+.|..|.+...+++..+. .|...|++++|+|-|..|++|+.|.++++|.-.
T Consensus       311 ~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~  380 (464)
T KOG0284|consen  311 SLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN  380 (464)
T ss_pred             eeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence            99999944 4555555 6699999998666666654 788999999999999999999999999999653

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.7e-30  Score=265.70  Aligned_cols=267  Identities=21%  Similarity=0.422  Sum_probs=241.6

Q ss_pred             CCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCCCEEEEEeCCC
Q 047260          450 IDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDR  529 (784)
Q Consensus       450 ~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg  529 (784)
                      ...++.+.+.|.++++|+...+.                          ..+.+++|++.|.+|+|+..|++||+++.|=
T Consensus       119 ~~~~v~~as~d~tikv~D~~tg~--------------------------~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl  172 (406)
T KOG0295|consen  119 SEALVVSASEDATIKVFDTETGE--------------------------LERSLRGHTDSVFDISFDASGKYLATCSSDL  172 (406)
T ss_pred             CceEEEEecCCceEEEEEccchh--------------------------hhhhhhccccceeEEEEecCccEEEecCCcc
Confidence            34455667789999999874433                          2456889999999999999999999999999


Q ss_pred             eEEEEECCC-CceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEE
Q 047260          530 KVVLWNMDT-LQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLF  608 (784)
Q Consensus       530 ~I~IWd~~t-~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll  608 (784)
                      .+.+||..+ .++++.+.+|...|.++.|-|.|.+|++++.|.+|+.|++.++. ++..+.+|..-|..+..+.||. ++
T Consensus       173 ~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~-cv~t~~~h~ewvr~v~v~~DGt-i~  250 (406)
T KOG0295|consen  173 SAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGY-CVKTFPGHSEWVRMVRVNQDGT-II  250 (406)
T ss_pred             chhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccce-eEEeccCchHhEEEEEecCCee-EE
Confidence            999999986 67778888999999999999999999999999999999999966 8999999999999999999987 99


Q ss_pred             EEEeCCCeEEEEeCCCCee---EEeecCCeeEEEEecCC---------------CEEEEEECCCcEEEEECCCCeEEEEE
Q 047260          609 CFCDNDNEIQYWSINPFLC---THITKGGTAQVRFQPRI---------------GQLLAAASDKVVSIFDIETDRQTHSL  670 (784)
Q Consensus       609 ~sgs~dg~I~iwDl~~~~~---~~~~~~~v~~v~fsp~~---------------~~Ll~~s~Dg~I~IwDl~t~~~i~~l  670 (784)
                      ++|+.|.+|++|-+.+..|   .+.++.++.+++|.|..               ..+.+++.|++|++||+.++.++.++
T Consensus       251 As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL  330 (406)
T KOG0295|consen  251 ASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTL  330 (406)
T ss_pred             EecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEE
Confidence            9999999999999998844   46666788888887632               37888888999999999999999999


Q ss_pred             eCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEEC
Q 047260          671 QGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNM  744 (784)
Q Consensus       671 ~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl  744 (784)
                      .+|...|..++|+|.|+||+++.|| +++|||++++.|..++..|..-++++.|+.+..++++|+-|-++++|..
T Consensus       331 ~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  331 VGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             ecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence            9999999999999999999999988 9999999999999999999999999999999999999999999999974

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1e-29  Score=247.80  Aligned_cols=280  Identities=16%  Similarity=0.357  Sum_probs=240.7

Q ss_pred             eeEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEE
Q 047260          497 FCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLW  576 (784)
Q Consensus       497 ~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IW  576 (784)
                      ..+.+.+..|.++|..+.|+-||+|.++++.|.+|++|+...+.+++++.+|...|.+++.+.|+..|++|+.|+.|.+|
T Consensus         7 tkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vw   86 (307)
T KOG0316|consen    7 TKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVW   86 (307)
T ss_pred             chhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEE
Confidence            34667788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCC--CeeEEe---ecCCeeEEEEecCCCEEEEEE
Q 047260          577 DAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINP--FLCTHI---TKGGTAQVRFQPRIGQLLAAA  651 (784)
Q Consensus       577 dl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~--~~~~~~---~~~~v~~v~fsp~~~~Ll~~s  651 (784)
                      |+.+++ ..+.+.+|.+.|..+.|+.+.. ++++|+.|..+++||.++  .+.+.+   ....+.++.+.  +..|++|+
T Consensus        87 DV~TGk-v~Rr~rgH~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS  162 (307)
T KOG0316|consen   87 DVNTGK-VDRRFRGHLAQVNTVRFNEESS-VVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGS  162 (307)
T ss_pred             EcccCe-eeeecccccceeeEEEecCcce-EEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeec
Confidence            999988 7888999999999999997765 999999999999999985  333433   34667777664  46788999


Q ss_pred             CCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEeCCCCceEEEeccCCCce--EEEEEecCCC
Q 047260          652 SDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVS-QNLVKVWSMASGECIQELSSNGNQF--HSCVFHPSYS  728 (784)
Q Consensus       652 ~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgs-dd~I~IwDl~t~~~i~~l~~~~~~I--~sl~fspdg~  728 (784)
                      .||+++.||++.+......  ...+|+|++|+++++.+..++ +.+|++.|-.+|+.+..+++|.+.-  ..|++.....
T Consensus       163 ~DGtvRtydiR~G~l~sDy--~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdt  240 (307)
T KOG0316|consen  163 VDGTVRTYDIRKGTLSSDY--FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDT  240 (307)
T ss_pred             cCCcEEEEEeecceeehhh--cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccce
Confidence            9999999999999876554  456899999999999888877 5599999999999999999987653  4567777888


Q ss_pred             EEEEEECCCeEEEEECCCCceE-EecccCCc-eEEEEEeCCCCEEEEEECCCcEEEe
Q 047260          729 TLLVVGGISSLELWNMAENKSM-TIAAHENI-ISALAQSPVTGMVASASHDSSVKLW  783 (784)
Q Consensus       729 ~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~-V~slafspdg~~LaSgs~DG~V~IW  783 (784)
                      .+++|+.||.|++||+.+...+ .+..|... |.++.++|.-..|+++.. +.+.+|
T Consensus       241 hV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~-~~~~~~  296 (307)
T KOG0316|consen  241 HVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATG-HGDLFW  296 (307)
T ss_pred             eEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecC-Cceece
Confidence            9999999999999999998887 45555555 789999998777777653 445555

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.97  E-value=1.9e-28  Score=255.18  Aligned_cols=276  Identities=26%  Similarity=0.485  Sum_probs=238.2

Q ss_pred             CcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCC
Q 047260          439 SLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSD  518 (784)
Q Consensus       439 ~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspd  518 (784)
                      ..+.+..+.++.. ++.+++.|+.+.+|+.....                          ....+..|...|.++.|+++
T Consensus        10 ~~i~~~~~~~~~~-~l~~~~~~g~i~i~~~~~~~--------------------------~~~~~~~~~~~i~~~~~~~~   62 (289)
T cd00200          10 GGVTCVAFSPDGK-LLATGSGDGTIKVWDLETGE--------------------------LLRTLKGHTGPVRDVAASAD   62 (289)
T ss_pred             CCEEEEEEcCCCC-EEEEeecCcEEEEEEeeCCC--------------------------cEEEEecCCcceeEEEECCC
Confidence            3455556656544 45567789999999774322                          34456678899999999999


Q ss_pred             CCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEE
Q 047260          519 GKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSL  598 (784)
Q Consensus       519 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl  598 (784)
                      +++|++++.||.|++||+.+++.+..+..|...|.++.|++++.++++++.|+.|++||+.+.+ ....+..|...|.++
T Consensus        63 ~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~  141 (289)
T cd00200          63 GTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK-CLTTLRGHTDWVNSV  141 (289)
T ss_pred             CCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcE-EEEEeccCCCcEEEE
Confidence            9999999999999999999888888888999999999999998889888889999999998755 556666888999999


Q ss_pred             EEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEee---cCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCC
Q 047260          599 DFHPKKTDLFCFCDNDNEIQYWSINPFLCTHIT---KGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAE  675 (784)
Q Consensus       599 ~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~---~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~  675 (784)
                      +|+|++. ++++++.++.|++||++..+....+   ...+.++.|+|++..+++++.++.|++||++.++.+..+..|..
T Consensus       142 ~~~~~~~-~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~  220 (289)
T cd00200         142 AFSPDGT-FVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHEN  220 (289)
T ss_pred             EEcCcCC-EEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCC
Confidence            9999854 7777777999999999866554443   35789999999999999999999999999999999888888999


Q ss_pred             CEEEEEEcCCCCEEEEEe-CCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEE
Q 047260          676 LVNYICWDTNGDYLASVS-QNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWN  743 (784)
Q Consensus       676 ~V~sl~~spdg~~Lasgs-dd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwd  743 (784)
                      .+.+++|++++.++++++ ++.|++||+.+++.+..+..|...|.++.|++++.+|++++.|+.|++|+
T Consensus       221 ~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         221 GVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             ceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            999999999999999988 66999999999999999998989999999999999999999999999996

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=1.7e-29  Score=278.97  Aligned_cols=278  Identities=23%  Similarity=0.370  Sum_probs=253.2

Q ss_pred             EeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCC
Q 047260          502 CIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANP  581 (784)
Q Consensus       502 ~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~  581 (784)
                      .+.+|...|.+++||.|...+++|+ .+.|+||+.++.++++++...  .+.+..|.|.++++++|...|.+-+||+.+.
T Consensus       368 ~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~  444 (888)
T KOG0306|consen  368 EIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLASA  444 (888)
T ss_pred             eeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeehh
Confidence            4678999999999999987777765 567999999999999999643  8999999999999999999999999999986


Q ss_pred             cceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC--------e-------eEEeecCCeeEEEEecCCCE
Q 047260          582 NFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPF--------L-------CTHITKGGTAQVRFQPRIGQ  646 (784)
Q Consensus       582 ~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~--------~-------~~~~~~~~v~~v~fsp~~~~  646 (784)
                      . .+.....|.+.|++++..|++. -+++++.|.+|++||..-.        +       ....+...+.|+.++|++++
T Consensus       445 ~-l~Eti~AHdgaIWsi~~~pD~~-g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~  522 (888)
T KOG0306|consen  445 S-LVETIRAHDGAIWSISLSPDNK-GFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKL  522 (888)
T ss_pred             h-hhhhhhccccceeeeeecCCCC-ceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcE
Confidence            6 5666779999999999999987 6778999999999998521        1       22334578999999999999


Q ss_pred             EEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEec
Q 047260          647 LLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHP  725 (784)
Q Consensus       647 Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fsp  725 (784)
                      |+++--|++|+||-+.+.+...++.+|.-+|.|+..+||++++++|+.| .|+||-+.-|.|-+.+.+|...|.++.|.|
T Consensus       523 LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P  602 (888)
T KOG0306|consen  523 LAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLP  602 (888)
T ss_pred             EEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcc
Confidence            9999999999999999999999999999999999999999999999966 999999999999999999999999999999


Q ss_pred             CCCEEEEEECCCeEEEEECCCCceE-EecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          726 SYSTLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       726 dg~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      ....+++++.|+.|+-||-..-+.+ .+.+|...|+|++.+|+|.+++++|+|.+|++|.
T Consensus       603 ~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE  662 (888)
T KOG0306|consen  603 KTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWE  662 (888)
T ss_pred             cceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeee
Confidence            9999999999999999998887766 8899999999999999999999999999999995

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.97  E-value=8.1e-29  Score=255.04  Aligned_cols=283  Identities=16%  Similarity=0.232  Sum_probs=245.5

Q ss_pred             EEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcC
Q 047260          499 EVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDA  578 (784)
Q Consensus       499 ~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl  578 (784)
                      .+.+|..|+..|.+++.+|+.+++|||+.|....||++.++.....+.+|+..|+++.|+.+|.+||||..+|.|+||+.
T Consensus        56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~  135 (399)
T KOG0296|consen   56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV  135 (399)
T ss_pred             ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence            46678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEEEECCCc
Q 047260          579 ANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLAAASDKV  655 (784)
Q Consensus       579 ~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~~s~Dg~  655 (784)
                      .++.. ...+......|.-+.|||.+. +|+.|+.||.|.+|.+.+......+.   .++++-.|.|+|++++++..||+
T Consensus       136 stg~~-~~~~~~e~~dieWl~WHp~a~-illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgt  213 (399)
T KOG0296|consen  136 STGGE-QWKLDQEVEDIEWLKWHPRAH-ILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGT  213 (399)
T ss_pred             ccCce-EEEeecccCceEEEEeccccc-EEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCce
Confidence            99774 444445567789999999765 88889999999999999854444444   56777789999999999999999


Q ss_pred             EEEEECCCCeEEEEEeC-CCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEecc--------CCCceEEE---E
Q 047260          656 VSIFDIETDRQTHSLQG-HAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSS--------NGNQFHSC---V  722 (784)
Q Consensus       656 I~IwDl~t~~~i~~l~~-h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~--------~~~~I~sl---~  722 (784)
                      |++|++.++.+++.+.. ......++.++..+..++.|+.+ .+++....+|+.+....+        +...+.++   .
T Consensus       214 i~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~  293 (399)
T KOG0296|consen  214 IIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIP  293 (399)
T ss_pred             EEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcc
Confidence            99999999999998874 34467888999999999988855 888989888888777662        33334444   4


Q ss_pred             EecCCCEEEEEECCCeEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          723 FHPSYSTLLVVGGISSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       723 fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      ++..-+..++|+-||+|.|||+...+......|...|..+.|-+ ..+|++++.||.|++||
T Consensus       294 ~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wD  354 (399)
T KOG0296|consen  294 SSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWD  354 (399)
T ss_pred             cccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEeee
Confidence            55556778899999999999999999999999999999999999 78999999999999997

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.97  E-value=6.6e-30  Score=250.91  Aligned_cols=277  Identities=22%  Similarity=0.293  Sum_probs=250.4

Q ss_pred             eecCCCceEEEEEcC---CCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCC
Q 047260          503 IRSRNSKVTCCHFSS---DGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAA  579 (784)
Q Consensus       503 l~~H~~~V~~l~fsp---dg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~  579 (784)
                      -.+|+.+|..++|||   +|-+|++++.|+.-.+-+-+++.-+.+|.+|.+.|+...++.+....++++.|-+-+|||.-
T Consensus        10 c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~   89 (334)
T KOG0278|consen   10 CHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAV   89 (334)
T ss_pred             EcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhh
Confidence            468999999999987   88899999999999999999999999999999999999999998899999999999999999


Q ss_pred             CCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCC----CeeEEeecCCeeEEEEecCCCEEEEEECCCc
Q 047260          580 NPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINP----FLCTHITKGGTAQVRFQPRIGQLLAAASDKV  655 (784)
Q Consensus       580 ~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~----~~~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~  655 (784)
                      ++.. +..+ .|...|.+++|+.|.. .+++|+.+..++|||++.    .+.+..+.+.|..+.|......|++.+.|++
T Consensus        90 tgde-lhsf-~hkhivk~~af~~ds~-~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~t  166 (334)
T KOG0278|consen   90 TGDE-LHSF-EHKHIVKAVAFSQDSN-YLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKT  166 (334)
T ss_pred             hhhh-hhhh-hhhheeeeEEecccch-hhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCc
Confidence            8773 3333 5788899999998876 677899999999999985    3455667788999999999999999999999


Q ss_pred             EEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEEC
Q 047260          656 VSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGG  735 (784)
Q Consensus       656 I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~  735 (784)
                      |++||.++++.+.++. ...+|+++.++++|++|.++....|++||..+..+++.++-. ..|.+...+|+...+++|+.
T Consensus       167 VRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P-~nV~SASL~P~k~~fVaGge  244 (334)
T KOG0278|consen  167 VRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMP-CNVESASLHPKKEFFVAGGE  244 (334)
T ss_pred             eEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCc-cccccccccCCCceEEecCc
Confidence            9999999999999987 678899999999999999988889999999999999888655 67899999999999999999


Q ss_pred             CCeEEEEECCCCceEEe--cccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          736 ISSLELWNMAENKSMTI--AAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       736 dg~I~Iwdl~~~~~~~~--~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      |..++.||..++..+..  .+|.++|.|+.|+|||...++|+.||+|+||.
T Consensus       245 d~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQ  295 (334)
T KOG0278|consen  245 DFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQ  295 (334)
T ss_pred             ceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEE
Confidence            99999999999988843  79999999999999999999999999999994

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.97  E-value=4.9e-29  Score=251.10  Aligned_cols=285  Identities=22%  Similarity=0.430  Sum_probs=242.5

Q ss_pred             eEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCC------------------CceeeecCCCCCCeEEEEEcc
Q 047260          498 CEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDT------------------LQTESTPEDHKSVVTDVRFRP  559 (784)
Q Consensus       498 ~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t------------------~~~~~~l~~h~~~It~i~fsp  559 (784)
                      -|...+..|..++.+.+|++||.++|+|+.|..|+|.|++.                  --.++++..|.+.|+++.|+|
T Consensus       103 yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP  182 (430)
T KOG0640|consen  103 YETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP  182 (430)
T ss_pred             cceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc
Confidence            45667888999999999999999999999999999999872                  135677889999999999999


Q ss_pred             CCCEEEEEeCCCeEEEEcCCCCcceeee--ccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEe------e
Q 047260          560 NSSQLATASVDKSVRLWDAANPNFCSQA--YTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHI------T  631 (784)
Q Consensus       560 dg~~Latgs~Dg~I~IWdl~~~~~~~~~--~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~------~  631 (784)
                      ...+|++|+.|++|++||+.... ..+.  ......+|.+|.|+|.|. ++++|.....+++||+++..|...      +
T Consensus       183 re~ILiS~srD~tvKlFDfsK~s-aKrA~K~~qd~~~vrsiSfHPsGe-fllvgTdHp~~rlYdv~T~QcfvsanPd~qh  260 (430)
T KOG0640|consen  183 RETILISGSRDNTVKLFDFSKTS-AKRAFKVFQDTEPVRSISFHPSGE-FLLVGTDHPTLRLYDVNTYQCFVSANPDDQH  260 (430)
T ss_pred             hhheEEeccCCCeEEEEecccHH-HHHHHHHhhccceeeeEeecCCCc-eEEEecCCCceeEEeccceeEeeecCccccc
Confidence            99999999999999999998643 2221  223457899999999998 666788889999999999888754      4


Q ss_pred             cCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeC-CCC-CEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceE
Q 047260          632 KGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQG-HAE-LVNYICWDTNGDYLASVSQN-LVKVWSMASGECI  708 (784)
Q Consensus       632 ~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~-h~~-~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i  708 (784)
                      .+.|+++.+++.++..++++.||.|++||--+++++.++.. |.+ .|.+..|..+|+||.+.+.| .|++|.+.+++++
T Consensus       261 t~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l  340 (430)
T KOG0640|consen  261 TGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRML  340 (430)
T ss_pred             ccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceE
Confidence            47899999999999999999999999999999999988864 554 78999999999999998866 9999999999999


Q ss_pred             EEeccCCC-----ceEEEEEecCCCEEEEEECC-CeEEEEECCCCceE--EecccCCceEEEEEeCCCCEEEEEECCCcE
Q 047260          709 QELSSNGN-----QFHSCVFHPSYSTLLVVGGI-SSLELWNMAENKSM--TIAAHENIISALAQSPVTGMVASASHDSSV  780 (784)
Q Consensus       709 ~~l~~~~~-----~I~sl~fspdg~~L~s~s~d-g~I~Iwdl~~~~~~--~~~~h~~~V~slafspdg~~LaSgs~DG~V  780 (784)
                      .++.+.+.     --+...|+....|++.-... +.+.-||.++...+  ...+|.+.+..+..+|.+..+++|++|-++
T Consensus       341 ~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~ra  420 (430)
T KOG0640|consen  341 KEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRA  420 (430)
T ss_pred             EEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeeccccee
Confidence            99976521     12345677777777776654 68999999988776  345899999999999999999999999999


Q ss_pred             EEeC
Q 047260          781 KLWK  784 (784)
Q Consensus       781 ~IWd  784 (784)
                      ++|.
T Consensus       421 RFWy  424 (430)
T KOG0640|consen  421 RFWY  424 (430)
T ss_pred             eeee
Confidence            9993

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=8.8e-29  Score=281.71  Aligned_cols=278  Identities=24%  Similarity=0.416  Sum_probs=240.3

Q ss_pred             ccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCCC
Q 047260          441 ASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGK  520 (784)
Q Consensus       441 ~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~  520 (784)
                      +....|.++... ++.++.|+.+++|......+                        .....+.+|...|.+++|+||++
T Consensus       162 v~~~~fs~~g~~-l~~~~~~~~i~~~~~~~~~~------------------------~~~~~l~~h~~~v~~~~fs~d~~  216 (456)
T KOG0266|consen  162 VTCVDFSPDGRA-LAAASSDGLIRIWKLEGIKS------------------------NLLRELSGHTRGVSDVAFSPDGS  216 (456)
T ss_pred             eEEEEEcCCCCe-EEEccCCCcEEEeecccccc------------------------hhhccccccccceeeeEECCCCc
Confidence            334566666666 56788999999997722221                        23444578999999999999999


Q ss_pred             EEEEEeCCCeEEEEEC-CCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEE
Q 047260          521 LLASSGHDRKVVLWNM-DTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLD  599 (784)
Q Consensus       521 ~Lasgs~Dg~I~IWd~-~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~  599 (784)
                      ++++++.|++|+|||+ ..+..++++.+|...|++++|+|+++++++|+.|++|+|||+++++ +...+.+|...|++++
T Consensus       217 ~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~-~~~~l~~hs~~is~~~  295 (456)
T KOG0266|consen  217 YLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGE-CVRKLKGHSDGISGLA  295 (456)
T ss_pred             EEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCe-EEEeeeccCCceEEEE
Confidence            9999999999999999 5668999999999999999999999999999999999999999965 8899999999999999


Q ss_pred             EcCCCCcEEEEEeCCCeEEEEeCCCCe--eEEeec---C--CeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeC
Q 047260          600 FHPKKTDLFCFCDNDNEIQYWSINPFL--CTHITK---G--GTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQG  672 (784)
Q Consensus       600 ~sp~~~~ll~sgs~dg~I~iwDl~~~~--~~~~~~---~--~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~  672 (784)
                      |++++. ++++++.|+.|++||+.++.  +.....   .  .++.+.|+|++.++++++.|+.+++||+..+..+..+.+
T Consensus       296 f~~d~~-~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~  374 (456)
T KOG0266|consen  296 FSPDGN-LLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTG  374 (456)
T ss_pred             ECCCCC-EEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecc
Confidence            999988 66667889999999999988  333332   2  478899999999999999999999999999999999998


Q ss_pred             CCCC---EEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccC-CCceEEEEEecCCCEEEEEE--CCCeEEEEECC
Q 047260          673 HAEL---VNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSN-GNQFHSCVFHPSYSTLLVVG--GISSLELWNMA  745 (784)
Q Consensus       673 h~~~---V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~-~~~I~sl~fspdg~~L~s~s--~dg~I~Iwdl~  745 (784)
                      |...   +.+...++.+.++++++.+ .|++||+.++..+..+.+| ...+..+.++|...++++++  .|+.|++|...
T Consensus       375 ~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  375 HSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             cCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence            8874   4444567899999999977 9999999999999999999 88899999999999999998  67899999754

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=2.1e-28  Score=242.77  Aligned_cols=279  Identities=18%  Similarity=0.268  Sum_probs=236.8

Q ss_pred             EeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCC
Q 047260          502 CIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANP  581 (784)
Q Consensus       502 ~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~  581 (784)
                      .+.+|+.+++-+.|+.+|.+|++|+.|.++.||-..+++.+-++.+|.+.|+||..+-+.++++||+.|.++++||++++
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG   84 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG   84 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cceeeeccCCCCCeEEEEEcCCCCcEEEEEe----CCCeEEEEeCCC-------Ce---eEEeecCCeeEEEEecCCCEE
Q 047260          582 NFCSQAYTGHSSPIMSLDFHPKKTDLFCFCD----NDNEIQYWSINP-------FL---CTHITKGGTAQVRFQPRIGQL  647 (784)
Q Consensus       582 ~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs----~dg~I~iwDl~~-------~~---~~~~~~~~v~~v~fsp~~~~L  647 (784)
                      +. +..+. ...+|..+.|+.++..++++.+    ..+.|.++|++.       ..   .+......++.+.|.|.+..|
T Consensus        85 k~-la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i  162 (327)
T KOG0643|consen   85 KQ-LATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI  162 (327)
T ss_pred             cE-EEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence            84 44333 4578999999999986666543    347899999972       22   223334678889999999999


Q ss_pred             EEEECCCcEEEEECCCC-eEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEec
Q 047260          648 LAAASDKVVSIFDIETD-RQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHP  725 (784)
Q Consensus       648 l~~s~Dg~I~IwDl~t~-~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fsp  725 (784)
                      ++|..||.|.+||++++ +.+.+...|...|+.+++++|..++++++.| +-++||+++-++++++... .+|++.+++|
T Consensus       163 i~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te-~PvN~aaisP  241 (327)
T KOG0643|consen  163 IAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTE-RPVNTAAISP  241 (327)
T ss_pred             EEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeec-ccccceeccc
Confidence            99999999999999998 5555567799999999999999999999977 9999999999999999654 7899999999


Q ss_pred             CCCEEEEEECCCe--EEEEECCCC------------ceE-EecccCCceEEEEEeCCCCEEEEEECCCcEEEe
Q 047260          726 SYSTLLVVGGISS--LELWNMAEN------------KSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLW  783 (784)
Q Consensus       726 dg~~L~s~s~dg~--I~Iwdl~~~------------~~~-~~~~h~~~V~slafspdg~~LaSgs~DG~V~IW  783 (784)
                      ...+++.++.-..  |.-=+.+.+            +.+ .+.+|-++|++|+|+|+|+..++|+.||.|+|.
T Consensus       242 ~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h  314 (327)
T KOG0643|consen  242 LLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLH  314 (327)
T ss_pred             ccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEE
Confidence            9888888876432  222222222            122 677899999999999999999999999999973

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.2e-28  Score=275.51  Aligned_cols=278  Identities=22%  Similarity=0.412  Sum_probs=246.4

Q ss_pred             eecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCc
Q 047260          503 IRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPN  582 (784)
Q Consensus       503 l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~  582 (784)
                      |...+.+|..++|+|...+++++-..|.|.+||..-+.++..|.+|.++|..|+|+|...++++|++|..|+||+.++.+
T Consensus         5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rr   84 (1202)
T KOG0292|consen    5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR   84 (1202)
T ss_pred             hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccce
Confidence            34456789999999999999999999999999999999999999999999999999999999999999999999999866


Q ss_pred             ceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCC---eeEEEEecCCCEEEEEECCCcEEEE
Q 047260          583 FCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGG---TAQVRFQPRIGQLLAAASDKVVSIF  659 (784)
Q Consensus       583 ~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~---v~~v~fsp~~~~Ll~~s~Dg~I~Iw  659 (784)
                       +..++.+|-+.|..+.||+.-+ .++++++|.+|+||+..+.+|+....++   |.|..|+|....+++++-|-+|+||
T Consensus        85 -clftL~GHlDYVRt~~FHheyP-WIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVW  162 (1202)
T KOG0292|consen   85 -CLFTLLGHLDYVRTVFFHHEYP-WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVW  162 (1202)
T ss_pred             -ehhhhccccceeEEeeccCCCc-eEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEE
Confidence             8889999999999999999988 6678999999999999999999887754   6788899999999999999999999


Q ss_pred             ECCCCe-----------------------------EEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCc--e
Q 047260          660 DIETDR-----------------------------QTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGE--C  707 (784)
Q Consensus       660 Dl~t~~-----------------------------~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~--~  707 (784)
                      |+..-+                             ..+.+.+|...|+-++|+|.-.+|++|+|| .|++|.+...+  .
T Consensus       163 DisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWE  242 (1202)
T KOG0292|consen  163 DISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWE  242 (1202)
T ss_pred             eecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecccccee
Confidence            984210                             123467899999999999999999999988 99999987654  4


Q ss_pred             EEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE-EecccCCceEEEEEeCCCCEEEEEECCCcEEEe
Q 047260          708 IQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLW  783 (784)
Q Consensus       708 i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg~~LaSgs~DG~V~IW  783 (784)
                      +.+..+|-+.|.++.|+|.-..|++.+.|++|+|||+...+.+ ++....++.+.++.+|..++++.| +|+-+.||
T Consensus       243 vDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAg-HDsGm~VF  318 (1202)
T KOG0292|consen  243 VDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAG-HDSGMIVF  318 (1202)
T ss_pred             ehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeee-cCCceEEE
Confidence            6677899999999999999999999999999999999998888 555667789999999999888866 55555555

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=3.2e-28  Score=240.78  Aligned_cols=280  Identities=19%  Similarity=0.304  Sum_probs=246.8

Q ss_pred             eEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceee--ecCCCCCCeEEEEEcc-CCCEEEEEeCCCeEEEEc
Q 047260          501 GCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTES--TPEDHKSVVTDVRFRP-NSSQLATASVDKSVRLWD  577 (784)
Q Consensus       501 ~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~--~l~~h~~~It~i~fsp-dg~~Latgs~Dg~I~IWd  577 (784)
                      +.+++|...|.+++|+.+|..|++|+.|+++.||+++..+...  ...+|.+.|-.++|+| ....|++++.|++|++||
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd   93 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD   93 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence            5678899999999999999999999999999999998765444  3468999999999998 667899999999999999


Q ss_pred             CCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec--CCeeEEEEecCCCEEEEEECCCc
Q 047260          578 AANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK--GGTAQVRFQPRIGQLLAAASDKV  655 (784)
Q Consensus       578 l~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~--~~v~~v~fsp~~~~Ll~~s~Dg~  655 (784)
                      ++.++.+..+..  ...=.-+.|+|++. .+++++.|..|.+.|.++.+.....+  ..+..++|+-++..++.....|.
T Consensus        94 ~r~~k~~~~i~~--~~eni~i~wsp~g~-~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~  170 (313)
T KOG1407|consen   94 IRSGKCTARIET--KGENINITWSPDGE-YIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGC  170 (313)
T ss_pred             eccCcEEEEeec--cCcceEEEEcCCCC-EEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCce
Confidence            999884444332  23334678999988 66778889999999999877765544  66788999987787887777899


Q ss_pred             EEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEE
Q 047260          656 VSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVG  734 (784)
Q Consensus       656 I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s  734 (784)
                      |.|......+++..++.|.....||.|+|+|+||++|+.| .+.+||+..--|++.+..+.-+|..+.|+-+|++|++++
T Consensus       171 v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaS  250 (313)
T KOG1407|consen  171 VEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASAS  250 (313)
T ss_pred             EEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccC
Confidence            9999999999999999999999999999999999999988 999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEECC---------CcEEEe
Q 047260          735 GISSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHD---------SSVKLW  783 (784)
Q Consensus       735 ~dg~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs~D---------G~V~IW  783 (784)
                      .|..|-|-++.+|..+.-..++++...|+|+|...+||-+++|         |.|++|
T Consensus       251 EDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiF  308 (313)
T KOG1407|consen  251 EDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIF  308 (313)
T ss_pred             ccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecCCCCccccccceeEEe
Confidence            9999999999999999888999999999999999999988765         567765

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.96  E-value=5.4e-28  Score=267.12  Aligned_cols=305  Identities=18%  Similarity=0.313  Sum_probs=238.0

Q ss_pred             CCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCCCEEEEEeCC
Q 047260          449 DIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHD  528 (784)
Q Consensus       449 ~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~D  528 (784)
                      +...++++|-.||.|++|...+.                          ....++.+|...|+++.|+..|..||+|+.|
T Consensus        75 ~d~l~lAVGYaDGsVqif~~~s~--------------------------~~~~tfngHK~AVt~l~fd~~G~rlaSGskD  128 (888)
T KOG0306|consen   75 DDILLLAVGYADGSVQIFSLESE--------------------------EILITFNGHKAAVTTLKFDKIGTRLASGSKD  128 (888)
T ss_pred             CCcceEEEEecCceEEeeccCCC--------------------------ceeeeecccccceEEEEEcccCceEeecCCC
Confidence            34455678999999999965322                          2445678999999999999999999999999


Q ss_pred             CeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEE
Q 047260          529 RKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLF  608 (784)
Q Consensus       529 g~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll  608 (784)
                      +.|.|||+-...-...+++|.+.|+..-|..+.++|++++.|+.|++||+++.. |..+...|.+.|+.+++++   .++
T Consensus       129 t~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqh-Cf~Thvd~r~Eiw~l~~~~---~~l  204 (888)
T KOG0306|consen  129 TDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQH-CFETHVDHRGEIWALVLDE---KLL  204 (888)
T ss_pred             ccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEecccce-eeeEEecccceEEEEEEec---ceE
Confidence            999999999888889999999999999999888999999999999999998533 3444444444444444443   133


Q ss_pred             EEEeC---------------------------------------------------------------------------
Q 047260          609 CFCDN---------------------------------------------------------------------------  613 (784)
Q Consensus       609 ~sgs~---------------------------------------------------------------------------  613 (784)
                      +++..                                                                           
T Consensus       205 vt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~  284 (888)
T KOG0306|consen  205 VTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILS  284 (888)
T ss_pred             EEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHH
Confidence            33333                                                                           


Q ss_pred             --------------------------------------------------------------------------------
Q 047260          614 --------------------------------------------------------------------------------  613 (784)
Q Consensus       614 --------------------------------------------------------------------------------  613 (784)
                                                                                                      
T Consensus       285 Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~  364 (888)
T KOG0306|consen  285 KKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRT  364 (888)
T ss_pred             HHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCcccccc
Confidence                                                                                            


Q ss_pred             ----------------------------CCeEEEEeCCCCeeEEeec-CCeeEEEEecCCCEEEEEECCCcEEEEECCCC
Q 047260          614 ----------------------------DNEIQYWSINPFLCTHITK-GGTAQVRFQPRIGQLLAAASDKVVSIFDIETD  664 (784)
Q Consensus       614 ----------------------------dg~I~iwDl~~~~~~~~~~-~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~  664 (784)
                                                  ++.|++|+..+.+|++.+. +-+.+..|.|.++++++|...|.+.+||+...
T Consensus       365 ~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~  444 (888)
T KOG0306|consen  365 SNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASA  444 (888)
T ss_pred             ceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehh
Confidence                                        4555555555555555554 23444556666666666666777777777666


Q ss_pred             eEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCC-----Cc--eEEEec-----cCCCceEEEEEecCCCEEE
Q 047260          665 RQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMAS-----GE--CIQELS-----SNGNQFHSCVFHPSYSTLL  731 (784)
Q Consensus       665 ~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t-----~~--~i~~l~-----~~~~~I~sl~fspdg~~L~  731 (784)
                      ..+..+..|.+.|.+++.+||++.+++++.| +|++||+.-     +.  .+-.+.     .-...|.|+.++||+++|+
T Consensus       445 ~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~La  524 (888)
T KOG0306|consen  445 SLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLA  524 (888)
T ss_pred             hhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEE
Confidence            6666677899999999999999999999966 999999742     21  111111     2246799999999999999


Q ss_pred             EEECCCeEEEEECCCCceE-EecccCCceEEEEEeCCCCEEEEEECCCcEEEe
Q 047260          732 VVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLW  783 (784)
Q Consensus       732 s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg~~LaSgs~DG~V~IW  783 (784)
                      ++--|.+|+||-+++-+.. .+.+|.-+|.|+..+||+++++|||.|..|+||
T Consensus       525 VsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiW  577 (888)
T KOG0306|consen  525 VSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIW  577 (888)
T ss_pred             EEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEe
Confidence            9999999999999998876 899999999999999999999999999999999

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=5.7e-28  Score=262.06  Aligned_cols=272  Identities=18%  Similarity=0.299  Sum_probs=239.8

Q ss_pred             ccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCCCEE
Q 047260          443 ASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLL  522 (784)
Q Consensus       443 s~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~~L  522 (784)
                      ++.+.|. +.++.++-+.|+|.+|+....                          ..++.+.-.+-+|.++.|-+..+++
T Consensus        18 sVd~HPt-ePw~la~LynG~V~IWnyetq--------------------------tmVksfeV~~~PvRa~kfiaRknWi   70 (794)
T KOG0276|consen   18 SVDFHPT-EPWILAALYNGDVQIWNYETQ--------------------------TMVKSFEVSEVPVRAAKFIARKNWI   70 (794)
T ss_pred             eeecCCC-CceEEEeeecCeeEEEecccc--------------------------eeeeeeeecccchhhheeeeccceE
Confidence            3444343 334446778999999977332                          2455566677789999999999999


Q ss_pred             EEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcC
Q 047260          523 ASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHP  602 (784)
Q Consensus       523 asgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp  602 (784)
                      ++|++|..|+||+.++++.+..|..|.+.|.||+.+|...+++|+|+|-+|++||.+..-.+..++.+|..-|.+++|+|
T Consensus        71 v~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnP  150 (794)
T KOG0276|consen   71 VTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNP  150 (794)
T ss_pred             EEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecC
Confidence            99999999999999999999999999999999999999999999999999999999988788999999999999999999


Q ss_pred             CCCcEEEEEeCCCeEEEEeCCCCeeEE---eecCCeeEEEEecCC--CEEEEEECCCcEEEEECCCCeEEEEEeCCCCCE
Q 047260          603 KKTDLFCFCDNDNEIQYWSINPFLCTH---ITKGGTAQVRFQPRI--GQLLAAASDKVVSIFDIETDRQTHSLQGHAELV  677 (784)
Q Consensus       603 ~~~~ll~sgs~dg~I~iwDl~~~~~~~---~~~~~v~~v~fsp~~--~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V  677 (784)
                      .+...|++++-|++|++|.+....+..   .+..+|+|+.|-+.+  .+|++|+.|.+|+|||..+..++.++.+|...|
T Consensus       151 kD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nv  230 (794)
T KOG0276|consen  151 KDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNV  230 (794)
T ss_pred             CCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccc
Confidence            999999999999999999998755544   455789999997754  589999999999999999999999999999999


Q ss_pred             EEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEE
Q 047260          678 NYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLEL  741 (784)
Q Consensus       678 ~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~I  741 (784)
                      ..++|+|.-.++++|++| +++||...+-+...++.-....++|++..+.+..+++|.++|.|.+
T Consensus       231 s~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v  295 (794)
T KOG0276|consen  231 SFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV  295 (794)
T ss_pred             eEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence            999999999999999976 9999999999888888888889999999999888888888776543

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.96  E-value=4.2e-29  Score=252.34  Aligned_cols=277  Identities=22%  Similarity=0.348  Sum_probs=241.0

Q ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecC--------CCCCCeEEEEEccCCCEEEEEeCCCeEEEEc
Q 047260          506 RNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPE--------DHKSVVTDVRFRPNSSQLATASVDKSVRLWD  577 (784)
Q Consensus       506 H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~--------~h~~~It~i~fspdg~~Latgs~Dg~I~IWd  577 (784)
                      ..+.+.|..|||||.||++|+.||.|.|||..+++..+.++        -+..+|.|+.|+.|...|++|+.||.|+||.
T Consensus       212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWr  291 (508)
T KOG0275|consen  212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWR  291 (508)
T ss_pred             cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEE
Confidence            44568899999999999999999999999999988766543        4788999999999999999999999999999


Q ss_pred             CCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecC---CeeEEEEecCCCEEEEEECCC
Q 047260          578 AANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKG---GTAQVRFQPRIGQLLAAASDK  654 (784)
Q Consensus       578 l~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~---~v~~v~fsp~~~~Ll~~s~Dg  654 (784)
                      +.++....+.-..|...|+|+.|+.|+. -+.+++.|.++++.-+.+++++..+.+   -++...|.++|.+++++++||
T Consensus       292 i~tG~ClRrFdrAHtkGvt~l~FSrD~S-qiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDg  370 (508)
T KOG0275|consen  292 IETGQCLRRFDRAHTKGVTCLSFSRDNS-QILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDG  370 (508)
T ss_pred             EecchHHHHhhhhhccCeeEEEEccCcc-hhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCc
Confidence            9998844444458999999999999987 566788999999999999999887775   467888999999999999999


Q ss_pred             cEEEEECCCCeEEEEEeC--CCCCEEEEEEcCC-CCEEEEEe-CCeEEEEeCCCCceEEEecc---CCCceEEEEEecCC
Q 047260          655 VVSIFDIETDRQTHSLQG--HAELVNYICWDTN-GDYLASVS-QNLVKVWSMASGECIQELSS---NGNQFHSCVFHPSY  727 (784)
Q Consensus       655 ~I~IwDl~t~~~i~~l~~--h~~~V~sl~~spd-g~~Lasgs-dd~I~IwDl~t~~~i~~l~~---~~~~I~sl~fspdg  727 (784)
                      +|++|+.++.+++.+|+.  ...+|+++..-|. ...+++|. .++|+|.++. |..++.+..   .++...+++.+|.|
T Consensus       371 tvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkG  449 (508)
T KOG0275|consen  371 TVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKG  449 (508)
T ss_pred             cEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCC
Confidence            999999999999998875  4457888887774 45566665 4599999874 667777754   35678899999999


Q ss_pred             CEEEEEECCCeEEEEECCCCceE-EecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          728 STLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       728 ~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      .++++.+.|+.++.|.+.+++.. ++..|+..|..++.+|..++|++-+.||.+++|+
T Consensus       450 ewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  450 EWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             cEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence            99999999999999999999877 7778999999999999999999999999999996

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.96  E-value=1.1e-28  Score=252.73  Aligned_cols=242  Identities=18%  Similarity=0.403  Sum_probs=220.9

Q ss_pred             CceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEE
Q 047260          539 LQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQ  618 (784)
Q Consensus       539 ~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~  618 (784)
                      .+..+.+.+|.+.|.|+++.|.+.+|++|+.|++|+|||+.++. +..++.+|...|..+++++..+ ++++++.|+.|+
T Consensus       141 wKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~-LkltltGhi~~vr~vavS~rHp-YlFs~gedk~VK  218 (460)
T KOG0285|consen  141 WKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQ-LKLTLTGHIETVRGVAVSKRHP-YLFSAGEDKQVK  218 (460)
T ss_pred             ceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCe-EEEeecchhheeeeeeecccCc-eEEEecCCCeeE
Confidence            46667788999999999999999999999999999999999977 7788899999999999999888 566788899999


Q ss_pred             EEeCCCCeeEEeec---CCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC
Q 047260          619 YWSINPFLCTHITK---GGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN  695 (784)
Q Consensus       619 iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd  695 (784)
                      .||++..+.++.+.   ..|.++..+|.-..|++++.|.+++|||+++...+..+.+|..+|..+.+.|-...+++|+.|
T Consensus       219 CwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D  298 (460)
T KOG0285|consen  219 CWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHD  298 (460)
T ss_pred             EEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCC
Confidence            99999887776554   568899999999999999999999999999999999999999999999999988888888866


Q ss_pred             -eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE-EecccCCceEEEEEeCCCCEEEE
Q 047260          696 -LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVAS  773 (784)
Q Consensus       696 -~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg~~LaS  773 (784)
                       +|++||++.|+...++..|...|.+++.+|....+++++.| .|+-|++..+..+ .+.+|...|++++...|+ ++++
T Consensus       299 ~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~  376 (460)
T KOG0285|consen  299 STVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVS  376 (460)
T ss_pred             ceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCc-eEEE
Confidence             99999999999999999999999999999999888887777 5999999999877 678999999999988775 8889


Q ss_pred             EECCCcEEEeC
Q 047260          774 ASHDSSVKLWK  784 (784)
Q Consensus       774 gs~DG~V~IWd  784 (784)
                      |++.|.+.+||
T Consensus       377 G~dng~~~fwd  387 (460)
T KOG0285|consen  377 GGDNGSIMFWD  387 (460)
T ss_pred             cCCceEEEEEe
Confidence            99999999997

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.96  E-value=6.3e-28  Score=249.42  Aligned_cols=272  Identities=19%  Similarity=0.349  Sum_probs=232.6

Q ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCC---EEEEEeCCCeEEEEcCCCCc
Q 047260          506 RNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSS---QLATASVDKSVRLWDAANPN  582 (784)
Q Consensus       506 H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~---~Latgs~Dg~I~IWdl~~~~  582 (784)
                      |.+.|.++...  +++|++|+.||.++|||.. |+....+.+|.++|.+++|.-...   .|++++.|.++++|.++.+.
T Consensus       104 hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~  180 (423)
T KOG0313|consen  104 HDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGE  180 (423)
T ss_pred             chhhhhhhccc--CceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCch
Confidence            89999999887  7799999999999999987 888999999999999988876333   59999999999999988765


Q ss_pred             ce---eeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCC----------------------------CeeEEee
Q 047260          583 FC---SQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINP----------------------------FLCTHIT  631 (784)
Q Consensus       583 ~~---~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~----------------------------~~~~~~~  631 (784)
                      ..   .....||...|.++...+++. .+++++.|..|++|+...                            ...+..|
T Consensus       181 ~~~~~~~~~~GHk~~V~sVsv~~sgt-r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GH  259 (423)
T KOG0313|consen  181 NKVKALKVCRGHKRSVDSVSVDSSGT-RFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGH  259 (423)
T ss_pred             hhhhHHhHhcccccceeEEEecCCCC-eEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccc
Confidence            32   233459999999999999987 899999999999999321                            0112223


Q ss_pred             cCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCC---ce
Q 047260          632 KGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASG---EC  707 (784)
Q Consensus       632 ~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~---~~  707 (784)
                      ..+|..|.|++ ...+++++-|.+|+.||++++..+..+. ....++|+..+|..++|++|+.+ .|++||.+++   -.
T Consensus       260 t~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v  337 (423)
T KOG0313|consen  260 TEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVV  337 (423)
T ss_pred             ccceeeEEEcC-CCceEeecccceEEEEEeecccceeeee-cCcceeEeecccccceeeecCCCCceeecCCCCCCCcee
Confidence            46788888988 6889999999999999999999888877 46678999999999999999866 9999999986   35


Q ss_pred             EEEeccCCCceEEEEEecCCCE-EEEEECCCeEEEEECCCCc-e-EEecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          708 IQELSSNGNQFHSCVFHPSYST-LLVVGGISSLELWNMAENK-S-MTIAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       708 i~~l~~~~~~I~sl~fspdg~~-L~s~s~dg~I~Iwdl~~~~-~-~~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      ...|.+|.+.|.+|.|+|...+ |++++.|+++++||+++.+ . ..+.+|.+.|.++.|.. +.+|++|+.|..|+|++
T Consensus       338 ~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-~~~IvSGGaD~~l~i~~  416 (423)
T KOG0313|consen  338 SQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GGLIVSGGADNKLRIFK  416 (423)
T ss_pred             EEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC-CceEEeccCcceEEEec
Confidence            6788899999999999998866 7788899999999999876 3 48889999999999984 66999999999999974

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.96  E-value=5.3e-29  Score=259.68  Aligned_cols=282  Identities=22%  Similarity=0.359  Sum_probs=243.9

Q ss_pred             eEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--eeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEE
Q 047260          498 CEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQ--TESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRL  575 (784)
Q Consensus       498 ~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~--~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~I  575 (784)
                      .....+..|.+.|..+.|-++...|++|+.|..|++|++...+  .+.++.+..+.|+++.|.++++++++++.|+.+++
T Consensus       166 ~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~  245 (459)
T KOG0288|consen  166 RALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRL  245 (459)
T ss_pred             hhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceee
Confidence            3445678899999999999998899999999999999997655  67778888899999999999999999999999999


Q ss_pred             EcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec--CCeeEEEEecCCCEEEEEECC
Q 047260          576 WDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK--GGTAQVRFQPRIGQLLAAASD  653 (784)
Q Consensus       576 Wdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~--~~v~~v~fsp~~~~Ll~~s~D  653 (784)
                      |++.... ...++.+|.+.|+++.|.-.... +++++.|.+|+.||+....|....-  ..+..|+..  ...++++..|
T Consensus       246 Wnvd~~r-~~~TLsGHtdkVt~ak~~~~~~~-vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~D  321 (459)
T KOG0288|consen  246 WNVDSLR-LRHTLSGHTDKVTAAKFKLSHSR-VVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFD  321 (459)
T ss_pred             eeccchh-hhhhhcccccceeeehhhccccc-eeeccccchhhhhhhhhhheeccccccccccceEec--ceeeeecccc
Confidence            9999866 77889999999999999876553 8999999999999999988876655  334445544  4567788889


Q ss_pred             CcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEeCCCCceEEEeccC----CCceEEEEEecCCC
Q 047260          654 KVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVS-QNLVKVWSMASGECIQELSSN----GNQFHSCVFHPSYS  728 (784)
Q Consensus       654 g~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgs-dd~I~IwDl~t~~~i~~l~~~----~~~I~sl~fspdg~  728 (784)
                      +.|++||++...+......+. .|+++..++++..|.+++ ||++.+.|+++......+...    ....+.+.|+|++.
T Consensus       322 kkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~  400 (459)
T KOG0288|consen  322 KKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGS  400 (459)
T ss_pred             cceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCc
Confidence            999999999999999988665 999999999999888888 559999999999888887643    34578999999999


Q ss_pred             EEEEEECCCeEEEEECCCCceEE-ecc-cCC-ceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          729 TLLVVGGISSLELWNMAENKSMT-IAA-HEN-IISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       729 ~L~s~s~dg~I~Iwdl~~~~~~~-~~~-h~~-~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      |+++|+.||.|+||++.++++.. +.. +.. .|++++|+|.|..|++++.++.+.+|.
T Consensus       401 YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  401 YVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             eeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence            99999999999999999998873 332 222 699999999999999999999999994

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=6.7e-27  Score=237.99  Aligned_cols=282  Identities=19%  Similarity=0.318  Sum_probs=241.1

Q ss_pred             eEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeC--CCeEEE
Q 047260          498 CEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASV--DKSVRL  575 (784)
Q Consensus       498 ~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~--Dg~I~I  575 (784)
                      +..+.++.-.+.|+++.|+++|.+|++++.|..|+|||..+++.++++..++..|..++|......++.++.  |.+||.
T Consensus         5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIry   84 (311)
T KOG1446|consen    5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRY   84 (311)
T ss_pred             ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEE
Confidence            344555667889999999999999999999999999999999999999999999999999987777777776  889999


Q ss_pred             EcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec-CCeeEEEEecCCCEEEEEECCC
Q 047260          576 WDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK-GGTAQVRFQPRIGQLLAAASDK  654 (784)
Q Consensus       576 Wdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~-~~v~~v~fsp~~~~Ll~~s~Dg  654 (784)
                      .++.+.+ .++.+.||...|.+|+.+|-+ ..|++++.|++|++||++..+|...+. .....++|.|.|-.++++...+
T Consensus        85 Lsl~dNk-ylRYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~  162 (311)
T KOG1446|consen   85 LSLHDNK-YLRYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSE  162 (311)
T ss_pred             EEeecCc-eEEEcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCC
Confidence            9999877 788999999999999999988 488899999999999999888876666 4455678999998888888878


Q ss_pred             cEEEEECCCC--eEEEEEe---CCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCce---EEEEEec
Q 047260          655 VVSIFDIETD--RQTHSLQ---GHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQF---HSCVFHP  725 (784)
Q Consensus       655 ~I~IwDl~t~--~~i~~l~---~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I---~sl~fsp  725 (784)
                      .|++||++.-  .+..++.   +.....+.+.|+|||++|+.+.++ .+++.|.-+|..+.++..+...-   ...+|.|
T Consensus       163 ~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftP  242 (311)
T KOG1446|consen  163 LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTP  242 (311)
T ss_pred             eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECC
Confidence            9999999874  3444443   346688999999999999888866 99999999999998887664432   6889999


Q ss_pred             CCCEEEEEECCCeEEEEECCCCceE-Eecc-cCCceEEEEEeCCCCEEEEEECCCcEEEe
Q 047260          726 SYSTLLVVGGISSLELWNMAENKSM-TIAA-HENIISALAQSPVTGMVASASHDSSVKLW  783 (784)
Q Consensus       726 dg~~L~s~s~dg~I~Iwdl~~~~~~-~~~~-h~~~V~slafspdg~~LaSgs~DG~V~IW  783 (784)
                      |++++++++.||+|++|+++++..+ .+.+ +.+++.++.|+|.-.++++++.  .+.+|
T Consensus       243 ds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s--~l~fw  300 (311)
T KOG1446|consen  243 DSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASS--NLVFW  300 (311)
T ss_pred             CCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCc--eEEEE
Confidence            9999999999999999999999887 5555 7899999999998877777654  56666

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.96  E-value=4.2e-29  Score=254.59  Aligned_cols=263  Identities=21%  Similarity=0.400  Sum_probs=222.4

Q ss_pred             CCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCCCEEEEEeCCC
Q 047260          450 IDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDR  529 (784)
Q Consensus       450 ~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg  529 (784)
                      ++.+ ..|..|.++++|+..+-.                          .+..+.||++.|.|+.|.  .+.|++|+.|.
T Consensus       207 D~ki-VSGlrDnTikiWD~n~~~--------------------------c~~~L~GHtGSVLCLqyd--~rviisGSSDs  257 (499)
T KOG0281|consen  207 DEKI-VSGLRDNTIKIWDKNSLE--------------------------CLKILTGHTGSVLCLQYD--ERVIVSGSSDS  257 (499)
T ss_pred             chhh-hcccccCceEEeccccHH--------------------------HHHhhhcCCCcEEeeecc--ceEEEecCCCc
Confidence            3344 479999999999774433                          345567899999999995  56999999999


Q ss_pred             eEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCc--ceeeeccCCCCCeEEEEEcCCCCcE
Q 047260          530 KVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPN--FCSQAYTGHSSPIMSLDFHPKKTDL  607 (784)
Q Consensus       530 ~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~--~~~~~~~~h~~~V~sl~~sp~~~~l  607 (784)
                      +|+|||+++++++.++.+|.+.|..+.|+  ..++++++.|.+|.|||+..+.  .+.+.+.||...|..+.|+..   +
T Consensus       258 TvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~k---y  332 (499)
T KOG0281|consen  258 TVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK---Y  332 (499)
T ss_pred             eEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccc---e
Confidence            99999999999999999999999999997  4599999999999999998765  245677899999999999754   8


Q ss_pred             EEEEeCCCeEEEEeCCCCeeEEeecCCeeEEEE-ecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCC
Q 047260          608 FCFCDNDNEIQYWSINPFLCTHITKGGTAQVRF-QPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNG  686 (784)
Q Consensus       608 l~sgs~dg~I~iwDl~~~~~~~~~~~~v~~v~f-sp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg  686 (784)
                      +++++.|.+|++|++.+.++++.+.++-..++. .-.++.+++|++|.+|++||++.|.+++.+++|+.-|.|+.|+  .
T Consensus       333 IVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~  410 (499)
T KOG0281|consen  333 IVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--N  410 (499)
T ss_pred             EEEecCCceEEEEeccceeeehhhhcccccceehhccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--C
Confidence            999999999999999999999887766555543 3356778888899999999999999999999999999999995  5


Q ss_pred             CEEEEEe-CCeEEEEeCCCCc---------eEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE
Q 047260          687 DYLASVS-QNLVKVWSMASGE---------CIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM  750 (784)
Q Consensus       687 ~~Lasgs-dd~I~IwDl~t~~---------~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~  750 (784)
                      +.+++|. ||+|+|||+..+.         |+.++..|.+.|..+.|..  ..|++++.|.+|.|||..++..-
T Consensus       411 krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~--fqIvsssHddtILiWdFl~~~~~  482 (499)
T KOG0281|consen  411 KRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDE--FQIISSSHDDTILIWDFLNGPPS  482 (499)
T ss_pred             ceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecc--eEEEeccCCCeEEEEEcCCCCcc
Confidence            5677776 6699999998753         5666777888999999854  47999999999999999876543

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=7.8e-27  Score=232.23  Aligned_cols=282  Identities=20%  Similarity=0.352  Sum_probs=225.9

Q ss_pred             CCCCCCcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEe-ecCCCceEE
Q 047260          434 SEGTGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCI-RSRNSKVTC  512 (784)
Q Consensus       434 ~~~~~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l-~~H~~~V~~  512 (784)
                      ..++....+.....+....++++++.|..|++|......   .                    +.....+ .+|+..|.+
T Consensus        10 ~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~---s--------------------~~ck~vld~~hkrsVRs   66 (312)
T KOG0645|consen   10 LSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD---S--------------------WTCKTVLDDGHKRSVRS   66 (312)
T ss_pred             ecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC---c--------------------EEEEEeccccchheeee
Confidence            344444566677766657788899999999999774411   1                    2222222 369999999


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEECC--CCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCC--cceeeec
Q 047260          513 CHFSSDGKLLASSGHDRKVVLWNMD--TLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANP--NFCSQAY  588 (784)
Q Consensus       513 l~fspdg~~Lasgs~Dg~I~IWd~~--t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~--~~~~~~~  588 (784)
                      ++|+|.|++||+|+.|.++.||.-.  +.+++.++++|...|.|++|+++|++||+|+.|+.|-||.+...  -.+...+
T Consensus        67 vAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL  146 (312)
T KOG0645|consen   67 VAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVL  146 (312)
T ss_pred             eeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeee
Confidence            9999999999999999999999876  46788999999999999999999999999999999999998843  3477889


Q ss_pred             cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCC---CCeeEEeec---CCeeEEEEecCCCEEEEEECCCcEEEEECC
Q 047260          589 TGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSIN---PFLCTHITK---GGTAQVRFQPRIGQLLAAASDKVVSIFDIE  662 (784)
Q Consensus       589 ~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~---~~~~~~~~~---~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~  662 (784)
                      .+|...|..+.|+|... +|++++.|.+|++|+-.   ...+...+.   ..+.++.|++.|..|++++.|++|+||-..
T Consensus       147 ~~HtqDVK~V~WHPt~d-lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~  225 (312)
T KOG0645|consen  147 QEHTQDVKHVIWHPTED-LLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY  225 (312)
T ss_pred             ccccccccEEEEcCCcc-eeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeec
Confidence            99999999999999865 99999999999999876   234555544   568899999999999999999999999866


Q ss_pred             CCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEeCCCC------ceEE-EeccCCCceEEEEEecC-CCEEEEE
Q 047260          663 TDRQTHSLQGHAELVNYICWDTNGDYLASVS-QNLVKVWSMASG------ECIQ-ELSSNGNQFHSCVFHPS-YSTLLVV  733 (784)
Q Consensus       663 t~~~i~~l~~h~~~V~sl~~spdg~~Lasgs-dd~I~IwDl~t~------~~i~-~l~~~~~~I~sl~fspd-g~~L~s~  733 (784)
                      +.-.    ..|...++.+.|. +| .|++++ |+.|+||.....      +.+. .-..|+..|+++.|.|. ...|+++
T Consensus       226 ~~~~----~~~sr~~Y~v~W~-~~-~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~  299 (312)
T KOG0645|consen  226 TDLS----GMHSRALYDVPWD-NG-VIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASG  299 (312)
T ss_pred             cCcc----hhcccceEeeeec-cc-ceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeec
Confidence            3211    1278899999998 44 555555 669999976643      1111 22468889999999995 6789999


Q ss_pred             ECCCeEEEEECC
Q 047260          734 GGISSLELWNMA  745 (784)
Q Consensus       734 s~dg~I~Iwdl~  745 (784)
                      +.||.|++|.+.
T Consensus       300 ~DDG~v~~W~l~  311 (312)
T KOG0645|consen  300 GDDGIVNFWELE  311 (312)
T ss_pred             CCCceEEEEEec
Confidence            999999999874

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.96  E-value=1.5e-28  Score=260.90  Aligned_cols=285  Identities=19%  Similarity=0.292  Sum_probs=246.0

Q ss_pred             eecCCCCCCcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCce
Q 047260          431 MNGSEGTGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKV  510 (784)
Q Consensus       431 ~~g~~~~~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V  510 (784)
                      +....++...++++.+.+....|+..++.|+.|++|++.++.                         .+++++.+|..+|
T Consensus       207 ~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~-------------------------~~lrtf~gH~k~V  261 (503)
T KOG0282|consen  207 SHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR-------------------------RCLRTFKGHRKPV  261 (503)
T ss_pred             eeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc-------------------------ceehhhhcchhhh
Confidence            344567778889999999888888899999999999987644                         3678889999999


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCC-CEEEEEeCCCeEEEEcCCCCcceeeecc
Q 047260          511 TCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNS-SQLATASVDKSVRLWDAANPNFCSQAYT  589 (784)
Q Consensus       511 ~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg-~~Latgs~Dg~I~IWdl~~~~~~~~~~~  589 (784)
                      .+++|+.+|..|++++.|+.|++||+++|+++..+. -...++|+.|+|++ +.|++|+.|+.|+.||+++++ ++..+.
T Consensus       262 rd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k-vvqeYd  339 (503)
T KOG0282|consen  262 RDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK-VVQEYD  339 (503)
T ss_pred             hhhhccccCCeeeeeecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchH-HHHHHH
Confidence            999999999999999999999999999999999884 45678999999988 899999999999999999987 788888


Q ss_pred             CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEee----cCCeeEEEEecCCCEEEEEECCCcEEEEECCCC-
Q 047260          590 GHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHIT----KGGTAQVRFQPRIGQLLAAASDKVVSIFDIETD-  664 (784)
Q Consensus       590 ~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~----~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~-  664 (784)
                      .|-+.|..|.|-+++. .+++.++|+.++||+.+....+...    .....++..+|.++++++-+.|+.|.+|.+... 
T Consensus       340 ~hLg~i~~i~F~~~g~-rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~  418 (503)
T KOG0282|consen  340 RHLGAILDITFVDEGR-RFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPF  418 (503)
T ss_pred             hhhhheeeeEEccCCc-eEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEeccccc
Confidence            9999999999999987 6778888999999999865444322    245578899999999999999999999987543 


Q ss_pred             --eEEEEEeCCCC--CEEEEEEcCCCCEEEEEe-CCeEEEEeCCCCceEEEeccCCCceEEEEEecCC-CEEEEEECCCe
Q 047260          665 --RQTHSLQGHAE--LVNYICWDTNGDYLASVS-QNLVKVWSMASGECIQELSSNGNQFHSCVFHPSY-STLLVVGGISS  738 (784)
Q Consensus       665 --~~i~~l~~h~~--~V~sl~~spdg~~Lasgs-dd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg-~~L~s~s~dg~  738 (784)
                        ...+.+++|..  .-..+.|||||++|++|+ ++.+.+||.++-+.+..+..|...+..+.|+|.. ..+++++-+|.
T Consensus       419 r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~  498 (503)
T KOG0282|consen  419 RLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGL  498 (503)
T ss_pred             ccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCce
Confidence              22345666653  556689999999999998 4599999999999999999999999999999976 46899999999


Q ss_pred             EEEEE
Q 047260          739 LELWN  743 (784)
Q Consensus       739 I~Iwd  743 (784)
                      |++||
T Consensus       499 Ikiwd  503 (503)
T KOG0282|consen  499 IKIWD  503 (503)
T ss_pred             eEecC
Confidence            99996

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.96  E-value=2.4e-27  Score=238.86  Aligned_cols=280  Identities=18%  Similarity=0.255  Sum_probs=234.9

Q ss_pred             CCCCCcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEE
Q 047260          435 EGTGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCH  514 (784)
Q Consensus       435 ~~~~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~  514 (784)
                      .++...+-...|.++.. ++++|+.|.-|.+|.+..+-                         .....+++|.+.|..+.
T Consensus        44 ~gh~geI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~gdc-------------------------eN~~~lkgHsgAVM~l~   97 (338)
T KOG0265|consen   44 PGHKGEIYTIKFHPDGS-CFASGGSDRAIVLWNVYGDC-------------------------ENFWVLKGHSGAVMELH   97 (338)
T ss_pred             CCCcceEEEEEECCCCC-eEeecCCcceEEEEeccccc-------------------------cceeeeccccceeEeee
Confidence            34455577778888554 45578899999999875433                         13345679999999999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCC-CEEEEEeCCCeEEEEcCCCCcceeeeccCCCC
Q 047260          515 FSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNS-SQLATASVDKSVRLWDAANPNFCSQAYTGHSS  593 (784)
Q Consensus       515 fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg-~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~  593 (784)
                      |.+|+..|++++.|.+|+.||+++++.++.+++|...|+.+.-+..| .++.+++.||+++|||++... .++++. ...
T Consensus        98 ~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~-~~~t~~-~ky  175 (338)
T KOG0265|consen   98 GMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE-AIKTFE-NKY  175 (338)
T ss_pred             eccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccc-hhhccc-cce
Confidence            99999999999999999999999999999999999999999855544 456778899999999999755 444443 356


Q ss_pred             CeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEEEECCCcEEEEECCCC----eE
Q 047260          594 PIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLAAASDKVVSIFDIETD----RQ  666 (784)
Q Consensus       594 ~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~----~~  666 (784)
                      .++++.|...+. -+++|+-|+.|++||++.........   ..|+.+..+++|.++++-+.|.+|++||++..    ++
T Consensus       176 qltAv~f~d~s~-qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~  254 (338)
T KOG0265|consen  176 QLTAVGFKDTSD-QVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRC  254 (338)
T ss_pred             eEEEEEeccccc-ceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCce
Confidence            799999998776 56788899999999998877766655   67899999999999999999999999999853    45


Q ss_pred             EEEEeCCCC----CEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEE
Q 047260          667 THSLQGHAE----LVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLEL  741 (784)
Q Consensus       667 i~~l~~h~~----~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~I  741 (784)
                      +..+.+|..    ....++|+|++.++.+++.+ .+++||.....++..+.+|...|+++.|+|....|++++.|.+|++
T Consensus       255 v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l  334 (338)
T KOG0265|consen  255 VKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL  334 (338)
T ss_pred             EEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence            777776543    44567899999999999866 9999999999999999999999999999999999999999999987


Q ss_pred             EE
Q 047260          742 WN  743 (784)
Q Consensus       742 wd  743 (784)
                      =.
T Consensus       335 ge  336 (338)
T KOG0265|consen  335 GE  336 (338)
T ss_pred             ec
Confidence            43

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=1.5e-28  Score=252.52  Aligned_cols=278  Identities=19%  Similarity=0.338  Sum_probs=232.5

Q ss_pred             eEEeEeecCCCceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEE
Q 047260          498 CEVGCIRSRNSKVTCCHFSSDG-KLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLW  576 (784)
Q Consensus       498 ~~i~~l~~H~~~V~~l~fspdg-~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IW  576 (784)
                      .-+..|.+|.+.|.|++=+|.. ..+|+|+.||.|+|||+....+..++..|.+.|..|++..  ..+++++.|++|+.|
T Consensus        57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~w  134 (433)
T KOG0268|consen   57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQW  134 (433)
T ss_pred             cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeee
Confidence            3467789999999999999976 6899999999999999999999999999999999999976  679999999999999


Q ss_pred             cCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEEEE-C
Q 047260          577 DAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLAAA-S  652 (784)
Q Consensus       577 dl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~~s-~  652 (784)
                      .++.+  ...++.+ .+.+..|+-+..+. .+++|+  ..|.|||......+..+.   ..+.++.|+|....+++++ +
T Consensus       135 k~~~~--p~~tilg-~s~~~gIdh~~~~~-~FaTcG--e~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~s  208 (433)
T KOG0268|consen  135 KIDGP--PLHTILG-KSVYLGIDHHRKNS-VFATCG--EQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCAS  208 (433)
T ss_pred             eccCC--cceeeec-cccccccccccccc-cccccC--ceeeecccccCCccceeecCCCceeEEecCCCcchheeeecc
Confidence            98863  4444443 34566666554443 677775  468999997655555444   6688999999887766655 7


Q ss_pred             CCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCC-ceEEEeccCCCceEEEEEecCCCEE
Q 047260          653 DKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASG-ECIQELSSNGNQFHSCVFHPSYSTL  730 (784)
Q Consensus       653 Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~-~~i~~l~~~~~~I~sl~fspdg~~L  730 (784)
                      |+.|.+||++...+++.+. -.-.-+.|||+|.+..++++++| .++.||++.- .++..+.+|.+.|.++.|+|.|.-|
T Consensus       209 DrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Ef  287 (433)
T KOG0268|consen  209 DRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEF  287 (433)
T ss_pred             CCceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchh
Confidence            9999999999998887765 34456789999987788888888 9999999874 6788889999999999999999999


Q ss_pred             EEEECCCeEEEEECCCCceEEec--ccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          731 LVVGGISSLELWNMAENKSMTIA--AHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       731 ~s~s~dg~I~Iwdl~~~~~~~~~--~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      ++|+.|.+|+||.+..+....+.  .--..|.|+.|+-|.++|++||+|+.|++|+
T Consensus       288 vsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWk  343 (433)
T KOG0268|consen  288 VSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWK  343 (433)
T ss_pred             ccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeee
Confidence            99999999999999987665332  2334699999999999999999999999996

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.96  E-value=3.1e-26  Score=278.80  Aligned_cols=284  Identities=19%  Similarity=0.296  Sum_probs=227.3

Q ss_pred             CCCcccccccccCCCceEeccccCCcceeEEeecCC-CCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEE
Q 047260          437 TGSLASASNLLEDIDRFADVGSIDENMESLLSHDGG-DGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHF  515 (784)
Q Consensus       437 ~~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~-~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~f  515 (784)
                      +...+.++.|.++... +++|+.|+.|++|+..... +++                  .... .+..+. +...|.+++|
T Consensus       482 ~~~~V~~i~fs~dg~~-latgg~D~~I~iwd~~~~~~~~~------------------~~~~-~~~~~~-~~~~v~~l~~  540 (793)
T PLN00181        482 SSNLVCAIGFDRDGEF-FATAGVNKKIKIFECESIIKDGR------------------DIHY-PVVELA-SRSKLSGICW  540 (793)
T ss_pred             CCCcEEEEEECCCCCE-EEEEeCCCEEEEEECCccccccc------------------cccc-ceEEec-ccCceeeEEe
Confidence            4566777888777654 4568899999999753210 000                  0000 111222 3568999999


Q ss_pred             cC-CCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEcc-CCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCC
Q 047260          516 SS-DGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRP-NSSQLATASVDKSVRLWDAANPNFCSQAYTGHSS  593 (784)
Q Consensus       516 sp-dg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fsp-dg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~  593 (784)
                      ++ ++.+||+++.||+|+|||+.+++.+..+.+|...|++++|+| ++.+|++|+.|++|++||+.++. ....+..+ .
T Consensus       541 ~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~-~~~~~~~~-~  618 (793)
T PLN00181        541 NSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV-SIGTIKTK-A  618 (793)
T ss_pred             ccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc-EEEEEecC-C
Confidence            88 578999999999999999999999999999999999999997 78999999999999999998866 44445443 6


Q ss_pred             CeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe----eEEeecCCeeEEEEecCCCEEEEEECCCcEEEEECCC------
Q 047260          594 PIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFL----CTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIET------  663 (784)
Q Consensus       594 ~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~----~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t------  663 (784)
                      .|.++.|++....++++|+.|+.|++||++...    .+..+...+.++.|. ++..|++++.|+.|++||++.      
T Consensus       619 ~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~  697 (793)
T PLN00181        619 NICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGIN  697 (793)
T ss_pred             CeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccC
Confidence            799999977666689999999999999998643    223355778999997 678999999999999999974      


Q ss_pred             CeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEe-------------ccCCCceEEEEEecCCCE
Q 047260          664 DRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQEL-------------SSNGNQFHSCVFHPSYST  729 (784)
Q Consensus       664 ~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l-------------~~~~~~I~sl~fspdg~~  729 (784)
                      ..++..+.+|...+.+++|++++.+|++|+++ .|+||+......+..+             ..+...|.+++|+|++..
T Consensus       698 ~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~  777 (793)
T PLN00181        698 ETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSST  777 (793)
T ss_pred             CcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCe
Confidence            35778899999999999999999999999965 9999998766544322             223456999999999999


Q ss_pred             EEEEECCCeEEEEEC
Q 047260          730 LLVVGGISSLELWNM  744 (784)
Q Consensus       730 L~s~s~dg~I~Iwdl  744 (784)
                      |++++.+|.|+||++
T Consensus       778 lva~~~dG~I~i~~~  792 (793)
T PLN00181        778 LVAANSTGNIKILEM  792 (793)
T ss_pred             EEEecCCCcEEEEec
Confidence            999999999999996

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.4e-27  Score=248.54  Aligned_cols=282  Identities=16%  Similarity=0.259  Sum_probs=233.9

Q ss_pred             CcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCC
Q 047260          439 SLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSD  518 (784)
Q Consensus       439 ~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspd  518 (784)
                      .-+|-..|+.++ ++++++|.|.+..+|.+..+.                       .+...+++.+|..+|..+.||||
T Consensus       225 dEVWfl~FS~nG-kyLAsaSkD~Taiiw~v~~d~-----------------------~~kl~~tlvgh~~~V~yi~wSPD  280 (519)
T KOG0293|consen  225 DEVWFLQFSHNG-KYLASASKDSTAIIWIVVYDV-----------------------HFKLKKTLVGHSQPVSYIMWSPD  280 (519)
T ss_pred             CcEEEEEEcCCC-eeEeeccCCceEEEEEEecCc-----------------------ceeeeeeeecccCceEEEEECCC
Confidence            334555564444 455678899999999775443                       25677889999999999999999


Q ss_pred             CCEEEEEeCCCeEEEEECCCCceeeecC-CCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCC-CCCeE
Q 047260          519 GKLLASSGHDRKVVLWNMDTLQTESTPE-DHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGH-SSPIM  596 (784)
Q Consensus       519 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~-~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h-~~~V~  596 (784)
                      .++|++|+.|..+.+||+.++.....+. +|...+.+++|.|||..+++|+.|++|..||++...  .....+- .-.|.
T Consensus       281 dryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~--~~~W~gvr~~~v~  358 (519)
T KOG0293|consen  281 DRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI--LGNWEGVRDPKVH  358 (519)
T ss_pred             CCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch--hhcccccccceeE
Confidence            9999999999999999999999887774 346889999999999999999999999999998643  3333332 24699


Q ss_pred             EEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeE--EeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCC
Q 047260          597 SLDFHPKKTDLFCFCDNDNEIQYWSINPFLCT--HITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHA  674 (784)
Q Consensus       597 sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~--~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~  674 (784)
                      +++..+||..+++++ .|..|++++.++..+.  .....++++++++.+++++++.-.+..|.+||++..+.+..+.+|.
T Consensus       359 dlait~Dgk~vl~v~-~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghk  437 (519)
T KOG0293|consen  359 DLAITYDGKYVLLVT-VDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHK  437 (519)
T ss_pred             EEEEcCCCcEEEEEe-cccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhccc
Confidence            999999999776655 6999999999876554  3345789999999999999999999999999999889999998887


Q ss_pred             CC--EEEEEEcC-CCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCCC-EEEEEECCCeEEEEECCCC
Q 047260          675 EL--VNYICWDT-NGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYS-TLLVVGGISSLELWNMAEN  747 (784)
Q Consensus       675 ~~--V~sl~~sp-dg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~-~L~s~s~dg~I~Iwdl~~~  747 (784)
                      ..  |-.-||.- +..++++|++| .|+||+..+++++.++.+|...|++++|+|..+ +++++++||+|+||.....
T Consensus       438 q~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~  515 (519)
T KOG0293|consen  438 QGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN  515 (519)
T ss_pred             ccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence            63  44446654 55899999977 999999999999999999999999999999775 5888999999999987643

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=6.8e-27  Score=261.53  Aligned_cols=277  Identities=19%  Similarity=0.350  Sum_probs=233.1

Q ss_pred             CcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCC
Q 047260          439 SLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSD  518 (784)
Q Consensus       439 ~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspd  518 (784)
                      +.+....|.|... ++.++--.|.+.+|+..-.                          ..+..|.+|+++|..++|+|.
T Consensus        10 sRvKglsFHP~rP-wILtslHsG~IQlWDYRM~--------------------------tli~rFdeHdGpVRgv~FH~~   62 (1202)
T KOG0292|consen   10 SRVKGLSFHPKRP-WILTSLHSGVIQLWDYRMG--------------------------TLIDRFDEHDGPVRGVDFHPT   62 (1202)
T ss_pred             ccccceecCCCCC-EEEEeecCceeeeehhhhh--------------------------hHHhhhhccCCccceeeecCC
Confidence            3344555655443 4446778889999976322                          245567889999999999999


Q ss_pred             CCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEE
Q 047260          519 GKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSL  598 (784)
Q Consensus       519 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl  598 (784)
                      ..++++||+|.+|+||+.++.+++.++.+|-+.|..+.|++.-.+|+++|+|-+|+||+..+.+ ++..+.||...|.|.
T Consensus        63 qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~-~iavltGHnHYVMcA  141 (1202)
T KOG0292|consen   63 QPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRK-CIAVLTGHNHYVMCA  141 (1202)
T ss_pred             CCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCc-eEEEEecCceEEEee
Confidence            9999999999999999999999999999999999999999999999999999999999999876 889999999999999


Q ss_pred             EEcCCCCcEEEEEeCCCeEEEEeCCCCe--------------------------------eEEeecCCeeEEEEecCCCE
Q 047260          599 DFHPKKTDLFCFCDNDNEIQYWSINPFL--------------------------------CTHITKGGTAQVRFQPRIGQ  646 (784)
Q Consensus       599 ~~sp~~~~ll~sgs~dg~I~iwDl~~~~--------------------------------~~~~~~~~v~~v~fsp~~~~  646 (784)
                      .|+|... ++++++-|.+|+|||+...+                                .+..+..+|+-++|+|.-..
T Consensus       142 qFhptED-lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpl  220 (1202)
T KOG0292|consen  142 QFHPTED-LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPL  220 (1202)
T ss_pred             ccCCccc-eEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcce
Confidence            9999865 89999999999999985211                                01112356778899999999


Q ss_pred             EEEEECCCcEEEEECCCCe--EEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEE
Q 047260          647 LLAAASDKVVSIFDIETDR--QTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVF  723 (784)
Q Consensus       647 Ll~~s~Dg~I~IwDl~t~~--~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~f  723 (784)
                      |++|+.|..|++|.+...+  .+-+..+|.+.|.++-|+|...++++.++| +|+|||+...+.+.++.......+.++.
T Consensus       221 iVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laa  300 (1202)
T KOG0292|consen  221 IVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAA  300 (1202)
T ss_pred             EEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEe
Confidence            9999999999999987654  344567899999999999999999999977 9999999999999999988899999999


Q ss_pred             ecCCCEEEEEECCCeEEEEECC
Q 047260          724 HPSYSTLLVVGGISSLELWNMA  745 (784)
Q Consensus       724 spdg~~L~s~s~dg~I~Iwdl~  745 (784)
                      +|..+.+++|. |+.+.+|.+.
T Consensus       301 hP~lNLfAAgH-DsGm~VFkle  321 (1202)
T KOG0292|consen  301 HPELNLFAAGH-DSGMIVFKLE  321 (1202)
T ss_pred             cCCcceeeeec-CCceEEEEEc
Confidence            99998655554 4445555554

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=3.3e-27  Score=266.19  Aligned_cols=247  Identities=18%  Similarity=0.322  Sum_probs=207.1

Q ss_pred             ceeEEeEee-cCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCC------------------------------------
Q 047260          496 TFCEVGCIR-SRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDT------------------------------------  538 (784)
Q Consensus       496 ~~~~i~~l~-~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t------------------------------------  538 (784)
                      .+.....+. +|.+.|+++.||+||+|||+||.|+.|+||.+..                                    
T Consensus       255 al~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~  334 (712)
T KOG0283|consen  255 ALTVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISS  334 (712)
T ss_pred             eeEEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccc
Confidence            344555566 8999999999999999999999999999997643                                    


Q ss_pred             ------------------------CceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCC
Q 047260          539 ------------------------LQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSP  594 (784)
Q Consensus       539 ------------------------~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~  594 (784)
                                              .++++.+.+|.+.|.+|.|+.+ .+|++++.|++||+|++.... |+..| .|.+-
T Consensus       335 ~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~-CL~~F-~Hndf  411 (712)
T KOG0283|consen  335 RTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKE-CLKVF-SHNDF  411 (712)
T ss_pred             cccccccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcc-eeeEE-ecCCe
Confidence                                    0233445689999999999965 489999999999999999755 77766 59999


Q ss_pred             eEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEee--cCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeC
Q 047260          595 IMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHIT--KGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQG  672 (784)
Q Consensus       595 V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~--~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~  672 (784)
                      |+||+|+|.+..+|++|+-||.|+||++...+.+.-.  +.-|++++|.|+|...++|+.+|.+++|+.+..+....+.-
T Consensus       412 VTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I  491 (712)
T KOG0283|consen  412 VTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHI  491 (712)
T ss_pred             eEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeE
Confidence            9999999999999999999999999999887776544  47799999999999999999999999999998776655431


Q ss_pred             --C------CCCEEEEEEcCCC--CEEEEEeCCeEEEEeCCCCceEEEeccCCC--ceEEEEEecCCCEEEEEECCCeEE
Q 047260          673 --H------AELVNYICWDTNG--DYLASVSQNLVKVWSMASGECIQELSSNGN--QFHSCVFHPSYSTLLVVGGISSLE  740 (784)
Q Consensus       673 --h------~~~V~sl~~spdg--~~Lasgsdd~I~IwDl~t~~~i~~l~~~~~--~I~sl~fspdg~~L~s~s~dg~I~  740 (784)
                        |      ...|+.+.|.|..  ++|++..|..|+|||.++..++..|++..+  .-....|+.||++|++++.|..|+
T Consensus       492 ~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VY  571 (712)
T KOG0283|consen  492 RLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVY  571 (712)
T ss_pred             eeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEE
Confidence              1      2279999998743  366766677999999999999999886533  335678999999999999999999


Q ss_pred             EEECC
Q 047260          741 LWNMA  745 (784)
Q Consensus       741 Iwdl~  745 (784)
                      ||++.
T Consensus       572 iW~~~  576 (712)
T KOG0283|consen  572 IWKND  576 (712)
T ss_pred             EEeCC
Confidence            99974

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1.4e-26  Score=246.40  Aligned_cols=274  Identities=18%  Similarity=0.265  Sum_probs=239.4

Q ss_pred             CCCceEEEEEcCCCCE-EEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcce
Q 047260          506 RNSKVTCCHFSSDGKL-LASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFC  584 (784)
Q Consensus       506 H~~~V~~l~fspdg~~-Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~  584 (784)
                      -.+.|.+++|+|...+ +|+.+ .-.|.||+..+....+++......|.++.|..||++|++|...|.|+|||+.+ +..
T Consensus        25 e~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~-r~i  102 (487)
T KOG0310|consen   25 EHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS-RVI  102 (487)
T ss_pred             ccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc-HHH
Confidence            3467999999995543 44444 34699999999888888888899999999999999999999999999999655 557


Q ss_pred             eeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEE---eecCCeeEEEEecCCC-EEEEEECCCcEEEEE
Q 047260          585 SQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTH---ITKGGTAQVRFQPRIG-QLLAAASDKVVSIFD  660 (784)
Q Consensus       585 ~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~---~~~~~v~~v~fsp~~~-~Ll~~s~Dg~I~IwD  660 (784)
                      ++.+.+|..+|..+.|+|.+..++++|++|+.+++||+.+.....   .++.-|.|.+|+|... .+++|+.||.|++||
T Consensus       103 LR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~D  182 (487)
T KOG0310|consen  103 LRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWD  182 (487)
T ss_pred             HHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEE
Confidence            888999999999999999999999999999999999999876532   3446788999999866 566778899999999


Q ss_pred             CCCC-eEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCC-ceEEEeccCCCceEEEEEecCCCEEEEEECCCe
Q 047260          661 IETD-RQTHSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASG-ECIQELSSNGNQFHSCVFHPSYSTLLVVGGISS  738 (784)
Q Consensus       661 l~t~-~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~-~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~  738 (784)
                      ++.. ..+.++. |..+|..+++-|.|..|++++.+.|+|||+.+| +.+..+..|...|+|+.+..++..|++++-|+.
T Consensus       183 tR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~  261 (487)
T KOG0310|consen  183 TRSLTSRVVELN-HGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRH  261 (487)
T ss_pred             eccCCceeEEec-CCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccc
Confidence            9987 5666665 999999999999999999999999999999965 556666669999999999999999999999999


Q ss_pred             EEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEECCCcEEE
Q 047260          739 LELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKL  782 (784)
Q Consensus       739 I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs~DG~V~I  782 (784)
                      |++||+.+.+.+.-..-.++|.+++.+|++..++.|-.||.+.+
T Consensus       262 VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~  305 (487)
T KOG0310|consen  262 VKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSI  305 (487)
T ss_pred             eEEEEccceEEEEeeecccceeeEEecCCCceEEEecccceeee
Confidence            99999988888877788999999999999999999999998754

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.95  E-value=1.2e-26  Score=267.27  Aligned_cols=278  Identities=21%  Similarity=0.343  Sum_probs=237.2

Q ss_pred             cCCCceEEEEEcCCCCEEEEEe--CCCeEEEEECCC------------CceeeecCCCCCCeEEEEEccCCCEEEEEeCC
Q 047260          505 SRNSKVTCCHFSSDGKLLASSG--HDRKVVLWNMDT------------LQTESTPEDHKSVVTDVRFRPNSSQLATASVD  570 (784)
Q Consensus       505 ~H~~~V~~l~fspdg~~Lasgs--~Dg~I~IWd~~t------------~~~~~~l~~h~~~It~i~fspdg~~Latgs~D  570 (784)
                      +++..|.+++.+|||..+|||+  .||.++||+.+.            .+.+.....|.+.|+|+.|++||.+||+|++|
T Consensus        11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD   90 (942)
T KOG0973|consen   11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD   90 (942)
T ss_pred             cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence            3556799999999999999999  999999998752            23445667899999999999999999999999


Q ss_pred             CeEEEEcCCC------Cc-----------ceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec-
Q 047260          571 KSVRLWDAAN------PN-----------FCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK-  632 (784)
Q Consensus       571 g~I~IWdl~~------~~-----------~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~-  632 (784)
                      +.|.||+...      ..           .+...+.+|+..|..++|+|++. ++++++.|+.|.+|+..+++++..++ 
T Consensus        91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~-~lvS~s~DnsViiwn~~tF~~~~vl~~  169 (942)
T KOG0973|consen   91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS-LLVSVSLDNSVIIWNAKTFELLKVLRG  169 (942)
T ss_pred             ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc-EEEEecccceEEEEccccceeeeeeec
Confidence            9999999872      00           15567889999999999999876 99999999999999999987776655 


Q ss_pred             --CCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCC------CCCEEEEEEcCCCCEEEEEe--C-C--eEEE
Q 047260          633 --GGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGH------AELVNYICWDTNGDYLASVS--Q-N--LVKV  699 (784)
Q Consensus       633 --~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h------~~~V~sl~~spdg~~Lasgs--d-d--~I~I  699 (784)
                        +.|..+.|.|-|++|++-+.|++|+||++.+....+.+.++      ...+..+.|+|||.+|++..  . +  ++.|
T Consensus       170 H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~I  249 (942)
T KOG0973|consen  170 HQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAI  249 (942)
T ss_pred             ccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEE
Confidence              66888999999999999999999999998877777777653      33678899999999999865  2 2  8999


Q ss_pred             EeCCCCceEEEeccCCCceEEEEEecC-------------CC----EEEEEECCCeEEEEECCCCceEEec--ccCCceE
Q 047260          700 WSMASGECIQELSSNGNQFHSCVFHPS-------------YS----TLLVVGGISSLELWNMAENKSMTIA--AHENIIS  760 (784)
Q Consensus       700 wDl~t~~~i~~l~~~~~~I~sl~fspd-------------g~----~L~s~s~dg~I~Iwdl~~~~~~~~~--~h~~~V~  760 (784)
                      .+-.+.+.-..|-+|..++.++.|+|.             ..    .+++|+.|++|.||.....+++.+.  -....|.
T Consensus       250 ieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~  329 (942)
T KOG0973|consen  250 IERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIV  329 (942)
T ss_pred             EecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCcee
Confidence            999888988999999999999999872             11    5788899999999999777776333  3467899


Q ss_pred             EEEEeCCCCEEEEEECCCcEEEe
Q 047260          761 ALAQSPVTGMVASASHDSSVKLW  783 (784)
Q Consensus       761 slafspdg~~LaSgs~DG~V~IW  783 (784)
                      +++|+|||..|+.||.||+|.+.
T Consensus       330 DmsWspdG~~LfacS~DGtV~~i  352 (942)
T KOG0973|consen  330 DMSWSPDGFSLFACSLDGTVALI  352 (942)
T ss_pred             eeeEcCCCCeEEEEecCCeEEEE
Confidence            99999999999999999999875

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1.2e-26  Score=226.33  Aligned_cols=276  Identities=22%  Similarity=0.280  Sum_probs=238.6

Q ss_pred             CCCCcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEE
Q 047260          436 GTGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHF  515 (784)
Q Consensus       436 ~~~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~f  515 (784)
                      .....+.++.+..+....++.| .|.+|++|+...+                          ..++++.+|...|..++.
T Consensus        15 ~~qgaV~avryN~dGnY~ltcG-sdrtvrLWNp~rg--------------------------~liktYsghG~EVlD~~~   67 (307)
T KOG0316|consen   15 CAQGAVRAVRYNVDGNYCLTCG-SDRTVRLWNPLRG--------------------------ALIKTYSGHGHEVLDAAL   67 (307)
T ss_pred             ccccceEEEEEccCCCEEEEcC-CCceEEeeccccc--------------------------ceeeeecCCCceeeeccc
Confidence            3344566778888888888655 7999999976443                          367889999999999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCc-ceeeeccCCCCC
Q 047260          516 SSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPN-FCSQAYTGHSSP  594 (784)
Q Consensus       516 spdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~-~~~~~~~~h~~~  594 (784)
                      +.|...|++|+.|..|.+||+++++.++.+.+|.+.|+.+.|+.+...+++|+.|.++++||.++.. .++.++....+.
T Consensus        68 s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~  147 (307)
T KOG0316|consen   68 SSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDG  147 (307)
T ss_pred             cccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCc
Confidence            9999999999999999999999999999999999999999999999999999999999999998744 366777777889


Q ss_pred             eEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEE-eecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCC
Q 047260          595 IMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTH-ITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGH  673 (784)
Q Consensus       595 V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~-~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h  673 (784)
                      |.+|....   ..+++|+.||+++.||++.+.... .+..+|++++|+++++..++++.|++|++.|-++++.+..+++|
T Consensus       148 V~Si~v~~---heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGh  224 (307)
T KOG0316|consen  148 VSSIDVAE---HEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGH  224 (307)
T ss_pred             eeEEEecc---cEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhccc
Confidence            99999874   378899999999999999877654 45688999999999999999999999999999999999999998


Q ss_pred             CCCE--EEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCc-eEEEEEecCCCEEEEEECCCeEEEE
Q 047260          674 AELV--NYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQ-FHSCVFHPSYSTLLVVGGISSLELW  742 (784)
Q Consensus       674 ~~~V--~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~-I~sl~fspdg~~L~s~s~dg~I~Iw  742 (784)
                      ...-  ...+++.....+++|++| .|++||+.....+..+..+... |.++.++|.-..++++...+ +.+|
T Consensus       225 kn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~-~~~~  296 (307)
T KOG0316|consen  225 KNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGHG-DLFW  296 (307)
T ss_pred             ccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCCc-eece
Confidence            8744  345677778889999976 9999999999999999888777 89999999988888777654 4444

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=8.5e-27  Score=229.91  Aligned_cols=274  Identities=22%  Similarity=0.354  Sum_probs=225.1

Q ss_pred             EEEEEcC-CCCEEEEEe-------CCCeEEEEECCCCceeeecC--CCCCCeEEEEEcc-CCCEEEEEeCCCeEEEEcCC
Q 047260          511 TCCHFSS-DGKLLASSG-------HDRKVVLWNMDTLQTESTPE--DHKSVVTDVRFRP-NSSQLATASVDKSVRLWDAA  579 (784)
Q Consensus       511 ~~l~fsp-dg~~Lasgs-------~Dg~I~IWd~~t~~~~~~l~--~h~~~It~i~fsp-dg~~Latgs~Dg~I~IWdl~  579 (784)
                      .++.||| -.++||++.       ..|++.|.++...+-+..+.  .-.+.+.+++|++ ..+.+++++.||+++|||+.
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~   91 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT   91 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence            5678998 233444432       46889999996444443332  4567899999999 55688999999999999988


Q ss_pred             CCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCC---eeEEEEecCC-CEEEEEECCCc
Q 047260          580 NPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGG---TAQVRFQPRI-GQLLAAASDKV  655 (784)
Q Consensus       580 ~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~---v~~v~fsp~~-~~Ll~~s~Dg~  655 (784)
                      .+..++..++.|..+|.++.|++..+..+++++.|++|++|+.+....+..+.++   |....|+|.. +.+++++.|+.
T Consensus        92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~  171 (311)
T KOG0277|consen   92 MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGT  171 (311)
T ss_pred             CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCce
Confidence            7777899999999999999999999989999999999999999987777777654   5667899965 55667778999


Q ss_pred             EEEEECCCCeEEEEEeCCCCCEEEEEEcC-CCCEEEEEe-CCeEEEEeCCCC-ceEEEeccCCCceEEEEEecCC-CEEE
Q 047260          656 VSIFDIETDRQTHSLQGHAELVNYICWDT-NGDYLASVS-QNLVKVWSMASG-ECIQELSSNGNQFHSCVFHPSY-STLL  731 (784)
Q Consensus       656 I~IwDl~t~~~i~~l~~h~~~V~sl~~sp-dg~~Lasgs-dd~I~IwDl~t~-~~i~~l~~~~~~I~sl~fspdg-~~L~  731 (784)
                      +++||++.......+..|...|.|+.|+. +.+.|++++ |+.|++||+++- .++.++.+|.-.|..++|+|.. ..|+
T Consensus       172 l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLa  251 (311)
T KOG0277|consen  172 LRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLA  251 (311)
T ss_pred             EEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhh
Confidence            99999987655555889999999999998 455677777 449999999985 5789999999999999999976 4578


Q ss_pred             EEECCCeEEEEECCCCceE--EecccCCceEEEEEeC-CCCEEEEEECCCcEEEeC
Q 047260          732 VVGGISSLELWNMAENKSM--TIAAHENIISALAQSP-VTGMVASASHDSSVKLWK  784 (784)
Q Consensus       732 s~s~dg~I~Iwdl~~~~~~--~~~~h~~~V~slafsp-dg~~LaSgs~DG~V~IWd  784 (784)
                      +++.|-+++|||...+...  +...|...|..+.|++ +..++|+++.|+.++||+
T Consensus       252 SasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~  307 (311)
T KOG0277|consen  252 SASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN  307 (311)
T ss_pred             hccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence            8888999999998855433  6668999999999997 456999999999999996

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.95  E-value=1.4e-26  Score=246.73  Aligned_cols=290  Identities=14%  Similarity=0.230  Sum_probs=232.6

Q ss_pred             CcceeEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC----ceeeec-CCCCCCeEEEEEccCCCEEEEEe
Q 047260          494 GFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTL----QTESTP-EDHKSVVTDVRFRPNSSQLATAS  568 (784)
Q Consensus       494 ~~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~----~~~~~l-~~h~~~It~i~fspdg~~Latgs  568 (784)
                      .++......+++|+..|.++++.|.|..|++|+.|..|++||+...    +..+.+ ......|.++.|++.+..|++.+
T Consensus       154 ~IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvs  233 (641)
T KOG0772|consen  154 LIPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVS  233 (641)
T ss_pred             cCCccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEe
Confidence            3455556678999999999999999999999999999999998732    222222 23446799999999999999999


Q ss_pred             CCCeEEEEcCCCCcce-----------eeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe-eEEeec----
Q 047260          569 VDKSVRLWDAANPNFC-----------SQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFL-CTHITK----  632 (784)
Q Consensus       569 ~Dg~I~IWdl~~~~~~-----------~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~-~~~~~~----  632 (784)
                      ....++|+|-+.....           .....||...++|.+|+|.....|++|+.||++++||++..+ .+.+++    
T Consensus       234 g~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~  313 (641)
T KOG0772|consen  234 GSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPA  313 (641)
T ss_pred             cCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccC
Confidence            8899999997653321           122458999999999999999999999999999999998533 222221    


Q ss_pred             ----CCeeEEEEecCCCEEEEEECCCcEEEEECCCCe--EEEE-EeCCCC--CEEEEEEcCCCCEEEEEe-CCeEEEEeC
Q 047260          633 ----GGTAQVRFQPRIGQLLAAASDKVVSIFDIETDR--QTHS-LQGHAE--LVNYICWDTNGDYLASVS-QNLVKVWSM  702 (784)
Q Consensus       633 ----~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~--~i~~-l~~h~~--~V~sl~~spdg~~Lasgs-dd~I~IwDl  702 (784)
                          -.++.++|++++..|++|+.||.|.+||.....  +... -..|..  .|+||.|+++|++|++-+ |+++++||+
T Consensus       314 ~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDL  393 (641)
T KOG0772|consen  314 GGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDL  393 (641)
T ss_pred             CCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeec
Confidence                457889999999999999999999999986542  2222 245777  999999999999999977 559999999


Q ss_pred             CCC-ceEEEeccC--CCceEEEEEecCCCEEEEEEC------CCeEEEEECCCCceE-EecccCCceEEEEEeCCCCEEE
Q 047260          703 ASG-ECIQELSSN--GNQFHSCVFHPSYSTLLVVGG------ISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVA  772 (784)
Q Consensus       703 ~t~-~~i~~l~~~--~~~I~sl~fspdg~~L~s~s~------dg~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg~~La  772 (784)
                      +.. +++.+..+-  ..+-+.|+|+|+.+.|++|+.      .|.+.+||..+...+ .+......|..+.|+|.=+.|+
T Consensus       394 rq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~  473 (641)
T KOG0772|consen  394 RQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIF  473 (641)
T ss_pred             cccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhhee
Confidence            975 566655443  234588999999999999876      368999999887766 5666678899999999988899


Q ss_pred             EEECCCcEEEe
Q 047260          773 SASHDSSVKLW  783 (784)
Q Consensus       773 Sgs~DG~V~IW  783 (784)
                      .|+.||.++||
T Consensus       474 ~gsgdG~~~vy  484 (641)
T KOG0772|consen  474 AGSGDGTAHVY  484 (641)
T ss_pred             eecCCCceEEE
Confidence            99999999986

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.95  E-value=2.4e-26  Score=241.02  Aligned_cols=274  Identities=20%  Similarity=0.340  Sum_probs=244.2

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeee
Q 047260          508 SKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQA  587 (784)
Q Consensus       508 ~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~  587 (784)
                      ..|+++...+....++||+.|..+.++|..+...+..+++|...|+.+.|+++...+++++.|..|+||...... ....
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s-~~~~  298 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS-EPTS  298 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc-Cccc
Confidence            458888888887899999999999999999999999999999999999999999999999999999999998765 6667


Q ss_pred             ccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecC-----CeeEEEEecCCCEEEEEECCCcEEEEECC
Q 047260          588 YTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKG-----GTAQVRFQPRIGQLLAAASDKVVSIFDIE  662 (784)
Q Consensus       588 ~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~-----~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~  662 (784)
                      ...|..+|+.+..+|.+. +|++++.|++..+.|++++.++.....     .+++..|+|||-.|.+|..|+.|+|||+.
T Consensus       299 ~~~h~~~V~~ls~h~tge-YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlk  377 (506)
T KOG0289|consen  299 SRPHEEPVTGLSLHPTGE-YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLK  377 (506)
T ss_pred             cccccccceeeeeccCCc-EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcC
Confidence            788999999999999998 666788899999999999888766554     37889999999999999999999999999


Q ss_pred             CCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCC-CceEEEEEecCCCEEEEEECCCeEE
Q 047260          663 TDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNG-NQFHSCVFHPSYSTLLVVGGISSLE  740 (784)
Q Consensus       663 t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~-~~I~sl~fspdg~~L~s~s~dg~I~  740 (784)
                      ....+..|.+|.++|..|.|+.+|.||++++++ .|++||++.-+...++.... ..+.++.|...|.+|+.++.|=.|+
T Consensus       378 s~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy  457 (506)
T KOG0289|consen  378 SQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVY  457 (506)
T ss_pred             CccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEE
Confidence            999999999999999999999999999999988 79999999988777776443 4799999999999999998876777


Q ss_pred             EEECCCCc--eE-EecccCCceEEEEEeCCCCEEEEEECCCcEEEe
Q 047260          741 LWNMAENK--SM-TIAAHENIISALAQSPVTGMVASASHDSSVKLW  783 (784)
Q Consensus       741 Iwdl~~~~--~~-~~~~h~~~V~slafspdg~~LaSgs~DG~V~IW  783 (784)
                      +++-.+..  ++ .+..|.+..+++.|.....++++++.|..++|+
T Consensus       458 ~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~  503 (506)
T KOG0289|consen  458 ICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLY  503 (506)
T ss_pred             EEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEe
Confidence            77654433  33 566788899999999999999999999999886

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.95  E-value=2.9e-26  Score=261.50  Aligned_cols=267  Identities=25%  Similarity=0.462  Sum_probs=237.3

Q ss_pred             cCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeee-cCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcc
Q 047260          505 SRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTEST-PEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNF  583 (784)
Q Consensus       505 ~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~-l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~  583 (784)
                      .|...|.|..|.  +.++++++.|.+|++||..++..+.. +.+|.+.|.+++|...+.+|++|+.|.+++|||+.++. 
T Consensus       206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~-  282 (537)
T KOG0274|consen  206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGE-  282 (537)
T ss_pred             cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCc-
Confidence            367789999998  55899999999999999999999888 99999999999998878899999999999999998877 


Q ss_pred             eeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEEEECCCcEEEEE
Q 047260          584 CSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLAAASDKVVSIFD  660 (784)
Q Consensus       584 ~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~~s~Dg~I~IwD  660 (784)
                      +...+.+|.+.|.++...+.   ++++|+.|..|++|++.+..++..+.   +.|.++.++  +..+++|+.|++|++||
T Consensus       283 C~~~l~gh~stv~~~~~~~~---~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~  357 (537)
T KOG0274|consen  283 CTHSLQGHTSSVRCLTIDPF---LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWD  357 (537)
T ss_pred             EEEEecCCCceEEEEEccCc---eEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEE
Confidence            88999999999999988644   78889999999999999988877665   567777776  78999999999999999


Q ss_pred             CCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCC-ceEEEeccCCCceEEEEEecCCCEEEEEECCCe
Q 047260          661 IETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASG-ECIQELSSNGNQFHSCVFHPSYSTLLVVGGISS  738 (784)
Q Consensus       661 l~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~-~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~  738 (784)
                      +.++++++++.+|...|.++.+... .++++|+-| +|++||+++. +|+.++.+|..-+..+.+  .+++|++++.|++
T Consensus       358 ~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~  434 (537)
T KOG0274|consen  358 PRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGT  434 (537)
T ss_pred             hhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEecccccc
Confidence            9999999999999999999988766 788888855 9999999999 999999999888866655  4558999999999


Q ss_pred             EEEEECCCCceE-Eecc-cCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          739 LELWNMAENKSM-TIAA-HENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       739 I~Iwdl~~~~~~-~~~~-h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      |++||..+++++ .+.+ |.+.|.++++.  ...+++++.||.+++||
T Consensus       435 Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~d  480 (537)
T KOG0274|consen  435 IKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWD  480 (537)
T ss_pred             EEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEe
Confidence            999999999988 4555 56889998877  46788999999999997

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=4.1e-26  Score=251.74  Aligned_cols=268  Identities=22%  Similarity=0.409  Sum_probs=231.7

Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeecc
Q 047260          510 VTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYT  589 (784)
Q Consensus       510 V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~  589 (784)
                      ..-+.|+ ..+.||+|. ...|++|+..++........+...|+++.|+++|.+|++|..+|.|.|||..+.+ ....+.
T Consensus       180 ~nlldWs-s~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k-~~~~~~  256 (484)
T KOG0305|consen  180 LNLLDWS-SANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQK-KTRTLR  256 (484)
T ss_pred             hhHhhcc-cCCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcc-cccccc
Confidence            3446777 344677665 4569999999998777666668999999999999999999999999999999876 444555


Q ss_pred             C-CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCee----EEeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCC
Q 047260          590 G-HSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLC----THITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETD  664 (784)
Q Consensus       590 ~-h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~----~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~  664 (784)
                      + |...|.+++|.   ..++.+|+.++.|.++|++....    ...+...|+.+.|++++.++++|+.|+.|.|||....
T Consensus       257 ~~h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~  333 (484)
T KOG0305|consen  257 GSHASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSP  333 (484)
T ss_pred             CCcCceeEEEecc---CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCc
Confidence            5 99999999998   34889999999999999986433    4456788999999999999999999999999999888


Q ss_pred             eEEEEEeCCCCCEEEEEEcC-CCCEEEEEe---CCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECC--Ce
Q 047260          665 RQTHSLQGHAELVNYICWDT-NGDYLASVS---QNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGI--SS  738 (784)
Q Consensus       665 ~~i~~l~~h~~~V~sl~~sp-dg~~Lasgs---dd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~d--g~  738 (784)
                      .+...+..|.+.|..++|+| ...+||+|+   |..|++||..+++.+..+.. ...|..+.|++..+-|+++.+.  +.
T Consensus       334 ~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~  412 (484)
T KOG0305|consen  334 EPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT-GSQVCSLIWSKKYKELLSTHGYSENQ  412 (484)
T ss_pred             cccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc-CCceeeEEEcCCCCEEEEecCCCCCc
Confidence            99999999999999999999 456788776   44999999999999988854 4789999999999888877654  58


Q ss_pred             EEEEECCCCceE-EecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          739 LELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       739 I~Iwdl~~~~~~-~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      |.||++.+.+.+ .+.+|..+|..++++|||..|++|+.|.++++|+
T Consensus       413 i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~  459 (484)
T KOG0305|consen  413 ITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWN  459 (484)
T ss_pred             EEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEecc
Confidence            999999987776 7889999999999999999999999999999996

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.95  E-value=4.1e-27  Score=237.96  Aligned_cols=281  Identities=20%  Similarity=0.329  Sum_probs=240.1

Q ss_pred             ccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCCC
Q 047260          441 ASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGK  520 (784)
Q Consensus       441 ~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~  520 (784)
                      +-...|.+|...++ +||.||-+++|+...+.-.+.                  +.+.--..|--|+..|.|++||.|..
T Consensus       216 ~EcA~FSPDgqyLv-sgSvDGFiEVWny~~GKlrKD------------------LkYQAqd~fMMmd~aVlci~FSRDsE  276 (508)
T KOG0275|consen  216 VECARFSPDGQYLV-SGSVDGFIEVWNYTTGKLRKD------------------LKYQAQDNFMMMDDAVLCISFSRDSE  276 (508)
T ss_pred             hhheeeCCCCceEe-eccccceeeeehhccchhhhh------------------hhhhhhcceeecccceEEEeecccHH
Confidence            34455667666555 799999999998866552222                  22233334556899999999999999


Q ss_pred             EEEEEeCCCeEEEEECCCCceeeecC-CCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEE
Q 047260          521 LLASSGHDRKVVLWNMDTLQTESTPE-DHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLD  599 (784)
Q Consensus       521 ~Lasgs~Dg~I~IWd~~t~~~~~~l~-~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~  599 (784)
                      .||+|+.||+|+||.+.++.+++.|. .|+..|+|+.|+.|+..+++++.|.+|+|.-+++++ +.+.+.+|.+.|....
T Consensus       277 MlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK-~LKEfrGHsSyvn~a~  355 (508)
T KOG0275|consen  277 MLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGK-CLKEFRGHSSYVNEAT  355 (508)
T ss_pred             HhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccch-hHHHhcCccccccceE
Confidence            99999999999999999999999997 899999999999999999999999999999999987 8889999999999999


Q ss_pred             EcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec-----CCeeEEEEecCC-CEEEEEECCCcEEEEECCCCeEEEEEeC-
Q 047260          600 FHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK-----GGTAQVRFQPRI-GQLLAAASDKVVSIFDIETDRQTHSLQG-  672 (784)
Q Consensus       600 ~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~-----~~v~~v~fsp~~-~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~-  672 (784)
                      |.++|. .+++++.||+|++|+..+.+|+..++     .++..+..-|.. .+++++...++|+|.++. |+.++++.. 
T Consensus       356 ft~dG~-~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSG  433 (508)
T KOG0275|consen  356 FTDDGH-HIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSG  433 (508)
T ss_pred             EcCCCC-eEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccC
Confidence            999987 67788999999999999999988876     345666666654 567778889999999986 677777753 


Q ss_pred             --CCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEE
Q 047260          673 --HAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWN  743 (784)
Q Consensus       673 --h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwd  743 (784)
                        ..+...+.+.+|.|.++.+.++| .++.|...+|+..+++..|...+..++-+|..+.|++-+.||.+++|.
T Consensus       434 kREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  434 KREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             CccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence              34567778899999999998876 999999999999999999999999999999999999999999999995

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.95  E-value=8.9e-27  Score=228.95  Aligned_cols=249  Identities=16%  Similarity=0.223  Sum_probs=223.7

Q ss_pred             eEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEc
Q 047260          498 CEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWD  577 (784)
Q Consensus       498 ~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWd  577 (784)
                      .=+.+|.+|.+.|+.++++.+-...|+++.|-+.+|||.-++..+..+ .|..-|.+++|+.|.++|++|+.++.+||||
T Consensus        50 dwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfd  128 (334)
T KOG0278|consen   50 DWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFD  128 (334)
T ss_pred             CcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhh
Confidence            347889999999999999999889999999999999999999999998 6999999999999999999999999999999


Q ss_pred             CCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEee--cCCeeEEEEecCCCEEEEEECCCc
Q 047260          578 AANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHIT--KGGTAQVRFQPRIGQLLAAASDKV  655 (784)
Q Consensus       578 l~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~--~~~v~~v~fsp~~~~Ll~~s~Dg~  655 (784)
                      +...+.....+.+|.+.|..+.|..... .|+++..|+.|++||.+++..+..+  +.+++++.++++|.+| +....+.
T Consensus       129 ln~p~App~E~~ghtg~Ir~v~wc~eD~-~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~il-Tia~gss  206 (334)
T KOG0278|consen  129 LNRPKAPPKEISGHTGGIRTVLWCHEDK-CILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRIL-TIAYGSS  206 (334)
T ss_pred             ccCCCCCchhhcCCCCcceeEEEeccCc-eEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEE-EEecCce
Confidence            9998888889999999999999988766 4555588999999999998887665  4889999999997755 4455689


Q ss_pred             EEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEe-ccCCCceEEEEEecCCCEEEEE
Q 047260          656 VSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQEL-SSNGNQFHSCVFHPSYSTLLVV  733 (784)
Q Consensus       656 I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l-~~~~~~I~sl~fspdg~~L~s~  733 (784)
                      |.+||..+..+++.++ -...|.+..++|+..++++|+++ .++.||..+++.+..+ ++|.++|.|+.|+|+|...++|
T Consensus       207 V~Fwdaksf~~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsG  285 (334)
T KOG0278|consen  207 VKFWDAKSFGLLKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASG  285 (334)
T ss_pred             eEEeccccccceeecc-CccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeecc
Confidence            9999999998888876 55678999999999999998887 9999999999999886 8999999999999999999999


Q ss_pred             ECCCeEEEEECCCCceE
Q 047260          734 GGISSLELWNMAENKSM  750 (784)
Q Consensus       734 s~dg~I~Iwdl~~~~~~  750 (784)
                      +.||+|+||.+..++..
T Consensus       286 SEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  286 SEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             CCCceEEEEEecCCCch
Confidence            99999999998776544

>PTZ00421 coronin; Provisional

Probab=99.95  E-value=5.4e-25  Score=250.65  Aligned_cols=261  Identities=15%  Similarity=0.215  Sum_probs=205.7

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcee-------------eecCCCCCCeEEEEEcc-CCCEEEEEeCCCe
Q 047260          507 NSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTE-------------STPEDHKSVVTDVRFRP-NSSQLATASVDKS  572 (784)
Q Consensus       507 ~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~-------------~~l~~h~~~It~i~fsp-dg~~Latgs~Dg~  572 (784)
                      -..|....+++|+..+++++.+..+..|+...+..+             ..+.+|.+.|++++|+| ++.+|++|+.|++
T Consensus        20 ~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dgt   99 (493)
T PTZ00421         20 FLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGT   99 (493)
T ss_pred             eeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCE
Confidence            344566666667666666666666667765432211             23568999999999999 8899999999999


Q ss_pred             EEEEcCCCCc------ceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEee---cCCeeEEEEecC
Q 047260          573 VRLWDAANPN------FCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHIT---KGGTAQVRFQPR  643 (784)
Q Consensus       573 I~IWdl~~~~------~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~---~~~v~~v~fsp~  643 (784)
                      |+|||+.+..      .....+.+|...|.+++|+|++..+|++++.|+.|++||+++...+..+   ...+.+++|+|+
T Consensus       100 IkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spd  179 (493)
T PTZ00421        100 IMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLD  179 (493)
T ss_pred             EEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECC
Confidence            9999997643      2455678999999999999998779999999999999999987766554   467899999999


Q ss_pred             CCEEEEEECCCcEEEEECCCCeEEEEEeCCCCC-EEEEEEcCCCCEEEEEe-----CCeEEEEeCCCCc-eEEEeccC-C
Q 047260          644 IGQLLAAASDKVVSIFDIETDRQTHSLQGHAEL-VNYICWDTNGDYLASVS-----QNLVKVWSMASGE-CIQELSSN-G  715 (784)
Q Consensus       644 ~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~-V~sl~~spdg~~Lasgs-----dd~I~IwDl~t~~-~i~~l~~~-~  715 (784)
                      +..|++++.|+.|+|||+++++.+..+.+|.+. +..+.|.+++..|++++     ++.|++||+++.. ++..+..+ .
T Consensus       180 G~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~  259 (493)
T PTZ00421        180 GSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQS  259 (493)
T ss_pred             CCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCC
Confidence            999999999999999999999999999888764 45678999887777654     4599999998754 44444333 3


Q ss_pred             CceEEEEEecCCCEEEEEE-CCCeEEEEECCCCceEEe--cccCCceEEEEEeCC
Q 047260          716 NQFHSCVFHPSYSTLLVVG-GISSLELWNMAENKSMTI--AAHENIISALAQSPV  767 (784)
Q Consensus       716 ~~I~sl~fspdg~~L~s~s-~dg~I~Iwdl~~~~~~~~--~~h~~~V~slafspd  767 (784)
                      ..+..+.|++++.+|++++ .|+.|++||+.+++.+..  ..+..++..++|.|.
T Consensus       260 ~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk  314 (493)
T PTZ00421        260 SALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK  314 (493)
T ss_pred             CceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence            4556677899999998887 599999999999887633  245567788888875

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1.7e-25  Score=226.74  Aligned_cols=289  Identities=13%  Similarity=0.232  Sum_probs=231.8

Q ss_pred             ccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 047260          456 VGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWN  535 (784)
Q Consensus       456 ~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd  535 (784)
                      +|++...+.-|.....++              .......+++..+..+..|.+.|+|++.+  +.++|+|+.|-+|+|||
T Consensus         6 vGtYE~~i~Gf~l~~~~~--------------~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYD   69 (362)
T KOG0294|consen    6 VGTYEHVILGFKLDPEPK--------------GCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYD   69 (362)
T ss_pred             EeeeeeEEEEEEeccCcc--------------ccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEe
Confidence            577776666665533221              11123346677788899999999999996  88999999999999999


Q ss_pred             CCCCceeeecCCCCCCeEEEEEccCCC--EEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeC
Q 047260          536 MDTLQTESTPEDHKSVVTDVRFRPNSS--QLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDN  613 (784)
Q Consensus       536 ~~t~~~~~~l~~h~~~It~i~fspdg~--~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~  613 (784)
                      +.+...+..+-.|.+.|+++.|.+.-.  .|++|+.||.|.+|+...-. +...+.+|.+.|+.++.+|.+. +.++.+.
T Consensus        70 m~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~-~~~slK~H~~~Vt~lsiHPS~K-LALsVg~  147 (362)
T KOG0294|consen   70 MRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWE-LLKSLKAHKGQVTDLSIHPSGK-LALSVGG  147 (362)
T ss_pred             ccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeE-EeeeecccccccceeEecCCCc-eEEEEcC
Confidence            999999999999999999999998664  89999999999999998864 8889999999999999999987 7778888


Q ss_pred             CCeEEEEeCCCCeeEEee--cCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEE
Q 047260          614 DNEIQYWSINPFLCTHIT--KGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLAS  691 (784)
Q Consensus       614 dg~I~iwDl~~~~~~~~~--~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Las  691 (784)
                      |+.++.||+-.++.-...  +...+.|.|+|.|.+++++.. ..|-||.+++.+....+. ....+.|+.|... .+|++
T Consensus       148 D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~-~~i~i~q~d~A~v~~~i~-~~~r~l~~~~l~~-~~L~v  224 (362)
T KOG0294|consen  148 DQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGR-NKIDIYQLDNASVFREIE-NPKRILCATFLDG-SELLV  224 (362)
T ss_pred             CceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEec-cEEEEEecccHhHhhhhh-ccccceeeeecCC-ceEEE
Confidence            999999999876655443  345566999999999888776 568899988776665554 3356778888654 45555


Q ss_pred             EeCC-eEEEEeCCCCceEEEeccCCCceEEEEE--ecCCCEEEEEECCCeEEEEECCCCc-----eEEecccCCceEEEE
Q 047260          692 VSQN-LVKVWSMASGECIQELSSNGNQFHSCVF--HPSYSTLLVVGGISSLELWNMAENK-----SMTIAAHENIISALA  763 (784)
Q Consensus       692 gsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~f--spdg~~L~s~s~dg~I~Iwdl~~~~-----~~~~~~h~~~V~sla  763 (784)
                      |.++ .|.+||..+..+...+..|...|.++.+  .|++.+|++++.||.|+|||++...     .+.......+++|+.
T Consensus       225 G~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~~~RltCl~  304 (362)
T KOG0294|consen  225 GGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNTNVRLTCLR  304 (362)
T ss_pred             ecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEeecCCccceee
Confidence            5555 9999999999999999999999999984  4678899999999999999998763     333334466677776


Q ss_pred             Ee
Q 047260          764 QS  765 (784)
Q Consensus       764 fs  765 (784)
                      ..
T Consensus       305 ~~  306 (362)
T KOG0294|consen  305 VK  306 (362)
T ss_pred             eh
Confidence            54

>PTZ00420 coronin; Provisional

Probab=99.95  E-value=8.6e-25  Score=250.32  Aligned_cols=244  Identities=16%  Similarity=0.214  Sum_probs=197.6

Q ss_pred             EeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccC-CCEEEEEeCCCeEEEEcCCCCcc-------eeeeccCCCCCeE
Q 047260          525 SGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPN-SSQLATASVDKSVRLWDAANPNF-------CSQAYTGHSSPIM  596 (784)
Q Consensus       525 gs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspd-g~~Latgs~Dg~I~IWdl~~~~~-------~~~~~~~h~~~V~  596 (784)
                      |+.++.|++|+......+..+.+|...|.+++|+|+ +.+|++|+.|++|+|||+.+...       ....+.+|...|.
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~  129 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS  129 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence            567889999999888888899999999999999996 78999999999999999976431       2335678999999


Q ss_pred             EEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEe--ecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCC
Q 047260          597 SLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHI--TKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHA  674 (784)
Q Consensus       597 sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~--~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~  674 (784)
                      +++|+|++..++++++.|+.|++||+++......  +...+.+++|+++|..|++++.|+.|+|||+++++.+..+.+|.
T Consensus       130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~  209 (568)
T PTZ00420        130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHD  209 (568)
T ss_pred             EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEeccc
Confidence            9999999988889999999999999998765443  34678999999999999999999999999999999999999998


Q ss_pred             CCEEEE-----EEcCCCCEEEEEe-CC----eEEEEeCCC-CceEEEeccC--CCceEEEEEecCCCEEEEEECCCeEEE
Q 047260          675 ELVNYI-----CWDTNGDYLASVS-QN----LVKVWSMAS-GECIQELSSN--GNQFHSCVFHPSYSTLLVVGGISSLEL  741 (784)
Q Consensus       675 ~~V~sl-----~~spdg~~Lasgs-dd----~I~IwDl~t-~~~i~~l~~~--~~~I~sl~fspdg~~L~s~s~dg~I~I  741 (784)
                      +.+.+.     .|++++.+|++++ ++    .|+|||+++ .+++..+..+  .+.+......+++.++++|+.|+.|++
T Consensus       210 g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~  289 (568)
T PTZ00420        210 GGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRY  289 (568)
T ss_pred             CCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEE
Confidence            765432     3458888888766 32    699999995 5666555332  233333334556888899999999999


Q ss_pred             EECCCCceEEe--cccCCceEEEEEeCCC
Q 047260          742 WNMAENKSMTI--AAHENIISALAQSPVT  768 (784)
Q Consensus       742 wdl~~~~~~~~--~~h~~~V~slafspdg  768 (784)
                      |++..+....+  ..+..++.+++|.|..
T Consensus       290 ~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        290 YQHSLGSIRKVNEYKSCSPFRSFGFLPKQ  318 (568)
T ss_pred             EEccCCcEEeecccccCCCccceEEcccc
Confidence            99988765433  3466788999999974

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.94  E-value=1.7e-25  Score=231.51  Aligned_cols=265  Identities=17%  Similarity=0.313  Sum_probs=222.6

Q ss_pred             CceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCC---CEEEEEeC
Q 047260          451 DRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDG---KLLASSGH  527 (784)
Q Consensus       451 ~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg---~~Lasgs~  527 (784)
                      .+++.+|++|+.+++|+...                           ..+..+.+|.++|.+++|.-..   ..|++++.
T Consensus       115 ~~~IltgsYDg~~riWd~~G---------------------------k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~  167 (423)
T KOG0313|consen  115 SKWILTGSYDGTSRIWDLKG---------------------------KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASM  167 (423)
T ss_pred             CceEEEeecCCeeEEEecCC---------------------------ceEEEEecCCcceeeeEEEecCCccceEEEecC
Confidence            56677899999999996521                           3567788999999988886533   36999999


Q ss_pred             CCeEEEEECCCCce----eeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCC----------------------
Q 047260          528 DRKVVLWNMDTLQT----ESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANP----------------------  581 (784)
Q Consensus       528 Dg~I~IWd~~t~~~----~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~----------------------  581 (784)
                      |.++++|.++.++.    +....+|...|-+|+..+++..+++|+.|.+|+||+..+.                      
T Consensus       168 Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~  247 (423)
T KOG0313|consen  168 DQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEG  247 (423)
T ss_pred             CceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcc
Confidence            99999999886543    3344599999999999999999999999999999993211                      


Q ss_pred             --cceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec--CCeeEEEEecCCCEEEEEECCCcEE
Q 047260          582 --NFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK--GGTAQVRFQPRIGQLLAAASDKVVS  657 (784)
Q Consensus       582 --~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~--~~v~~v~fsp~~~~Ll~~s~Dg~I~  657 (784)
                        +.+...+.+|..+|.++.|.+  ...+++++.|.+|+.||+.++.++....  ....++.++|....|++|+.|..|+
T Consensus       248 ~~r~P~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~ir  325 (423)
T KOG0313|consen  248 GTRTPLVTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIR  325 (423)
T ss_pred             cccCceEEecccccceeeEEEcC--CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCcee
Confidence              113456779999999999998  3479999999999999999887776554  5688999999999999999999999


Q ss_pred             EEECCCC---eEEEEEeCCCCCEEEEEEcCCCCE-EEEEe-CCeEEEEeCCCCc-eEEEeccCCCceEEEEEecCCCEEE
Q 047260          658 IFDIETD---RQTHSLQGHAELVNYICWDTNGDY-LASVS-QNLVKVWSMASGE-CIQELSSNGNQFHSCVFHPSYSTLL  731 (784)
Q Consensus       658 IwDl~t~---~~i~~l~~h~~~V~sl~~spdg~~-Lasgs-dd~I~IwDl~t~~-~i~~l~~~~~~I~sl~fspdg~~L~  731 (784)
                      +||.+++   -....|.+|.+.|.++.|+|...+ |++++ |+++++||+++.+ ++..+.+|...|.++.|.. +..|+
T Consensus       326 l~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-~~~Iv  404 (423)
T KOG0313|consen  326 LWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GGLIV  404 (423)
T ss_pred             ecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC-CceEE
Confidence            9999986   355678899999999999997665 56666 5599999999987 9999999999999999985 45799


Q ss_pred             EEECCCeEEEEECC
Q 047260          732 VVGGISSLELWNMA  745 (784)
Q Consensus       732 s~s~dg~I~Iwdl~  745 (784)
                      +|+.|.+|+|+.-.
T Consensus       405 SGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  405 SGGADNKLRIFKGS  418 (423)
T ss_pred             eccCcceEEEeccc
Confidence            99999999998643

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=7.9e-24  Score=205.19  Aligned_cols=287  Identities=17%  Similarity=0.253  Sum_probs=232.7

Q ss_pred             cceeEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC---------------ceeeecCCCCCCeEEEEEcc
Q 047260          495 FTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTL---------------QTESTPEDHKSVVTDVRFRP  559 (784)
Q Consensus       495 ~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~---------------~~~~~l~~h~~~It~i~fsp  559 (784)
                      ..|..+..+. ....|.+++|+|.|.+.|+|+...+.+|......               ...+.-+.|.+.|.|.+|+|
T Consensus        21 ~~f~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~   99 (350)
T KOG0641|consen   21 KHFEAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSP   99 (350)
T ss_pred             cceEEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecC
Confidence            4566666554 5667999999999999999999999888754321               11223357999999999999


Q ss_pred             CCCEEEEEeCCCeEEEEcCCCCcc----eeeeccCCCCCeEEEEEcCC---CCcEEEEEe-CCCeEEEEeCCCCeeEEee
Q 047260          560 NSSQLATASVDKSVRLWDAANPNF----CSQAYTGHSSPIMSLDFHPK---KTDLFCFCD-NDNEIQYWSINPFLCTHIT  631 (784)
Q Consensus       560 dg~~Latgs~Dg~I~IWdl~~~~~----~~~~~~~h~~~V~sl~~sp~---~~~ll~sgs-~dg~I~iwDl~~~~~~~~~  631 (784)
                      +|.+|++|+.|++|++..+.....    ....+.-|.+.|..++|..+   +..++++++ .|..|++-|...+...+.+
T Consensus       100 ~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~  179 (350)
T KOG0641|consen  100 CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHAL  179 (350)
T ss_pred             ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceee
Confidence            999999999999999987654321    22346679999999999654   344666654 5778888888877766665


Q ss_pred             cC---CeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeC--C-----CCCEEEEEEcCCCCEEEEEeCC-eEEEE
Q 047260          632 KG---GTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQG--H-----AELVNYICWDTNGDYLASVSQN-LVKVW  700 (784)
Q Consensus       632 ~~---~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~--h-----~~~V~sl~~spdg~~Lasgsdd-~I~Iw  700 (784)
                      .+   ++..+ ++-++-.+++++.|.+|++||++-..++..+..  |     ...|.+++..|.|++|++|-.+ ...+|
T Consensus       180 sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~ly  258 (350)
T KOG0641|consen  180 SGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLY  258 (350)
T ss_pred             cCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEE
Confidence            54   44433 334556788888899999999999888887642  2     3579999999999999999977 89999


Q ss_pred             eCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCc-----eEEecccCCceEEEEEeCCCCEEEEEE
Q 047260          701 SMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENK-----SMTIAAHENIISALAQSPVTGMVASAS  775 (784)
Q Consensus       701 Dl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~-----~~~~~~h~~~V~slafspdg~~LaSgs  775 (784)
                      |++.++.+..+..|...|.++.|+|...|+++++.|..|++-|+...-     .+.+..|...+..+.|+|..-.+++.+
T Consensus       259 dirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisss  338 (350)
T KOG0641|consen  259 DIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSS  338 (350)
T ss_pred             EeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeecc
Confidence            999999999999999999999999999999999999999999987642     336678999999999999999999999


Q ss_pred             CCCcEEEe
Q 047260          776 HDSSVKLW  783 (784)
Q Consensus       776 ~DG~V~IW  783 (784)
                      .|.++.+|
T Consensus       339 adkt~tlw  346 (350)
T KOG0641|consen  339 ADKTATLW  346 (350)
T ss_pred             CcceEEEe
Confidence            99999999

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=8.5e-25  Score=220.60  Aligned_cols=267  Identities=16%  Similarity=0.266  Sum_probs=216.0

Q ss_pred             CCCceEEEEEcC-CCCEEEEEeCCCeEEEEECCC-Ccee-eecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCc
Q 047260          506 RNSKVTCCHFSS-DGKLLASSGHDRKVVLWNMDT-LQTE-STPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPN  582 (784)
Q Consensus       506 H~~~V~~l~fsp-dg~~Lasgs~Dg~I~IWd~~t-~~~~-~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~  582 (784)
                      -++.|.+|+||| ...+|+.++.||+||+|++.. +..+ +....|.++|.+++|+.||..+++|+.|+.+++||+.++.
T Consensus        26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q  105 (347)
T KOG0647|consen   26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ  105 (347)
T ss_pred             cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC
Confidence            567799999999 555777899999999999986 3332 3445799999999999999999999999999999999875


Q ss_pred             ceeeeccCCCCCeEEEEEcCCCC-cEEEEEeCCCeEEEEeCCCCeeEEeecCCeeEEEEecCCCEEEEEECCCcEEEEEC
Q 047260          583 FCSQAYTGHSSPIMSLDFHPKKT-DLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDI  661 (784)
Q Consensus       583 ~~~~~~~~h~~~V~sl~~sp~~~-~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl  661 (784)
                        ...+..|..+|.++.|-+... .+|++|+.|.+|++||.+....+....-+-.+-+..-....++++..+..|.+|++
T Consensus       106 --~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL  183 (347)
T KOG0647|consen  106 --VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNL  183 (347)
T ss_pred             --eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEc
Confidence              556678999999999987543 47899999999999999988887777655555555555567899999999999999


Q ss_pred             CCCeEEE-EEe-CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEeCCCC--ceEEEeccCC---------CceEEEEEecCC
Q 047260          662 ETDRQTH-SLQ-GHAELVNYICWDTNGDYLASVS-QNLVKVWSMASG--ECIQELSSNG---------NQFHSCVFHPSY  727 (784)
Q Consensus       662 ~t~~~i~-~l~-~h~~~V~sl~~spdg~~Lasgs-dd~I~IwDl~t~--~~i~~l~~~~---------~~I~sl~fspdg  727 (784)
                      +++.... .+. .-+-.++||+...|....+.|+ +|.+.|..+..+  +.-.+|+.|.         ..|++++|+|..
T Consensus       184 ~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~h  263 (347)
T KOG0647|consen  184 ENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVH  263 (347)
T ss_pred             CCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeeccc
Confidence            8763322 111 1334678998888877667777 778888888776  4455666654         247889999999


Q ss_pred             CEEEEEECCCeEEEEECCCCceE-EecccCCceEEEEEeCCCCEEEEE
Q 047260          728 STLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASA  774 (784)
Q Consensus       728 ~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg~~LaSg  774 (784)
                      ..|+++++||++.+||-.....+ ....|..+|++.+|+.+|.++|-+
T Consensus       264 gtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA  311 (347)
T KOG0647|consen  264 GTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA  311 (347)
T ss_pred             ceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence            99999999999999998887666 667899999999999999988765

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=8.9e-26  Score=246.61  Aligned_cols=268  Identities=22%  Similarity=0.368  Sum_probs=233.4

Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCc------eeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCc-ceeeecc
Q 047260          517 SDGKLLASSGHDRKVVLWNMDTLQ------TESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPN-FCSQAYT  589 (784)
Q Consensus       517 pdg~~Lasgs~Dg~I~IWd~~t~~------~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~-~~~~~~~  589 (784)
                      |.++||+|||.||.|++|++....      ....++.|.+.|.++....+++.|+++|.|-+|++|+..... .+..++.
T Consensus        35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir  114 (735)
T KOG0308|consen   35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR  114 (735)
T ss_pred             CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh
Confidence            367789999999999999986422      366788999999999999999999999999999999998764 6888899


Q ss_pred             CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCee--EE------------eecCCeeEEEEecCCCEEEEEECCCc
Q 047260          590 GHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLC--TH------------ITKGGTAQVRFQPRIGQLLAAASDKV  655 (784)
Q Consensus       590 ~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~--~~------------~~~~~v~~v~fsp~~~~Ll~~s~Dg~  655 (784)
                      .|.+.|.|+++-.....++++|+-|+.|.+||++++..  +.            ..+..+.+++.++.+..++.|+.++.
T Consensus       115 ~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~  194 (735)
T KOG0308|consen  115 THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKD  194 (735)
T ss_pred             cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccc
Confidence            99999999999555566999999999999999996522  11            22357888999999988999999999


Q ss_pred             EEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEE
Q 047260          656 VSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVG  734 (784)
Q Consensus       656 I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s  734 (784)
                      |++||.++.+.+..+.+|...|.++..++||..+++++.| +|++||+...+|+.++..|...|+++..+|+-.++++|+
T Consensus       195 lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~  274 (735)
T KOG0308|consen  195 LRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGG  274 (735)
T ss_pred             eEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecC
Confidence            9999999999999999999999999999999999888755 999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEECCCC-ceEEecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          735 GISSLELWNMAEN-KSMTIAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       735 ~dg~I~Iwdl~~~-~~~~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      .||.|..=|+++. ++..+...+.+|..+..+...+-+-+++.|+.|+-|.
T Consensus       275 rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~  325 (735)
T KOG0308|consen  275 RDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWK  325 (735)
T ss_pred             CCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecC
Confidence            9999999999984 4445666777888888776666667788899999884

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.94  E-value=8.8e-26  Score=235.71  Aligned_cols=273  Identities=22%  Similarity=0.360  Sum_probs=231.2

Q ss_pred             cccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCC
Q 047260          440 LASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDG  519 (784)
Q Consensus       440 ~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg  519 (784)
                      -.-.+.|..+.+.|. +|..|..|.+|......                        ...+.+|.+..+.|+++.|.+++
T Consensus       177 ev~~v~~l~~sdtla-tgg~Dr~Ik~W~v~~~k------------------------~~~~~tLaGs~g~it~~d~d~~~  231 (459)
T KOG0288|consen  177 EVHDVEFLRNSDTLA-TGGSDRIIKLWNVLGEK------------------------SELISTLAGSLGNITSIDFDSDN  231 (459)
T ss_pred             ccceeEEccCcchhh-hcchhhhhhhhhcccch------------------------hhhhhhhhccCCCcceeeecCCC
Confidence            344566667777776 58899999999774332                        23456778889999999999999


Q ss_pred             CEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEE
Q 047260          520 KLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLD  599 (784)
Q Consensus       520 ~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~  599 (784)
                      +++++++.|+.+++|+++......++.+|.+.|+++.|......+++|+.|.+|++||+.... |.+.... .+.+..|+
T Consensus       232 ~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~-C~kt~l~-~S~cnDI~  309 (459)
T KOG0288|consen  232 KHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAY-CSKTVLP-GSQCNDIV  309 (459)
T ss_pred             ceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhh-eeccccc-cccccceE
Confidence            999999999999999999999999999999999999999877779999999999999999855 4444332 34456666


Q ss_pred             EcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec--CCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeC----C
Q 047260          600 FHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK--GGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQG----H  673 (784)
Q Consensus       600 ~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~--~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~----h  673 (784)
                      ..   ...++++..|+.|++||+++..+.....  +.++++..++++..+++++.|.++.++|+++......+..    .
T Consensus       310 ~~---~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~  386 (459)
T KOG0288|consen  310 CS---ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKC  386 (459)
T ss_pred             ec---ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecccccc
Confidence            55   3378889999999999999887776655  7899999999999999999999999999999988887763    2


Q ss_pred             CCCEEEEEEcCCCCEEEEEeC-CeEEEEeCCCCceEEEeccCCCc--eEEEEEecCCCEEEEEECCCeEEEE
Q 047260          674 AELVNYICWDTNGDYLASVSQ-NLVKVWSMASGECIQELSSNGNQ--FHSCVFHPSYSTLLVVGGISSLELW  742 (784)
Q Consensus       674 ~~~V~sl~~spdg~~Lasgsd-d~I~IwDl~t~~~i~~l~~~~~~--I~sl~fspdg~~L~s~s~dg~I~Iw  742 (784)
                      ...++.++|+|++.|+++|+. +.|+||++.++++...+......  |+++.|+|.|..+++++.++.+.+|
T Consensus       387 asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  387 ASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             ccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence            335889999999999999995 59999999999999988866555  9999999999999999999999999

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.94  E-value=1.2e-24  Score=248.32  Aligned_cols=263  Identities=22%  Similarity=0.420  Sum_probs=226.8

Q ss_pred             CceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeE-eecCCCceEEEEEcCCCCEEEEEeCCC
Q 047260          451 DRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGC-IRSRNSKVTCCHFSSDGKLLASSGHDR  529 (784)
Q Consensus       451 ~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~-l~~H~~~V~~l~fspdg~~Lasgs~Dg  529 (784)
                      +.++.+|+.|.++.+|+....                          ..+.+ +.+|.+.|++++|..-+.+|++|+.|.
T Consensus       218 ~~~~~~~s~~~tl~~~~~~~~--------------------------~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~  271 (537)
T KOG0274|consen  218 DGFFKSGSDDSTLHLWDLNNG--------------------------YLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDK  271 (537)
T ss_pred             cCeEEecCCCceeEEeecccc--------------------------eEEEeeccCCCCCceeEEEecCCCEEEEEecCC
Confidence            445567888999988855222                          24444 899999999999988788999999999


Q ss_pred             eEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEE
Q 047260          530 KVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFC  609 (784)
Q Consensus       530 ~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~  609 (784)
                      +++|||..++.+...+.+|.+.|.++...  ..++++|+.|.+|++|++.++. ++..+.+|.++|.++..+   ..+++
T Consensus       272 t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~-~l~l~~~h~~~V~~v~~~---~~~lv  345 (537)
T KOG0274|consen  272 TERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGA-CLNLLRGHTGPVNCVQLD---EPLLV  345 (537)
T ss_pred             cEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcc-eEEEeccccccEEEEEec---CCEEE
Confidence            99999999999999999999999999885  4578889999999999999877 788888899999999998   33899


Q ss_pred             EEeCCCeEEEEeCCCCeeEEeecC---CeeEEEEecCCCEEEEEECCCcEEEEECCCC-eEEEEEeCCCCCEEEEEEcCC
Q 047260          610 FCDNDNEIQYWSINPFLCTHITKG---GTAQVRFQPRIGQLLAAASDKVVSIFDIETD-RQTHSLQGHAELVNYICWDTN  685 (784)
Q Consensus       610 sgs~dg~I~iwDl~~~~~~~~~~~---~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~-~~i~~l~~h~~~V~sl~~spd  685 (784)
                      +|+.|+.|++||+.+++++..+.+   .|.++.+... ..++.|+.|+.|++||+++. +++..+.+|..-+..+.+  .
T Consensus       346 sgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~  422 (537)
T KOG0274|consen  346 SGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--R  422 (537)
T ss_pred             EEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--c
Confidence            999999999999999999988775   4566656554 89999999999999999999 999999999998866654  4


Q ss_pred             CCEEEEEe-CCeEEEEeCCCCceEEEecc-CCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE
Q 047260          686 GDYLASVS-QNLVKVWSMASGECIQELSS-NGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM  750 (784)
Q Consensus       686 g~~Lasgs-dd~I~IwDl~t~~~i~~l~~-~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~  750 (784)
                      +++|++++ |+.|++||..++++++++.+ |...|..+.+.  ...+++++.++.+++||+.+++..
T Consensus       423 ~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~  487 (537)
T KOG0274|consen  423 DNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLI  487 (537)
T ss_pred             cceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchh
Confidence            67888887 55999999999999999998 56778888776  457999999999999999998876

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=5.6e-25  Score=234.36  Aligned_cols=241  Identities=19%  Similarity=0.270  Sum_probs=209.6

Q ss_pred             eecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEcc-CCCEEEEEeCCCeEEEEcCCCC
Q 047260          503 IRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRP-NSSQLATASVDKSVRLWDAANP  581 (784)
Q Consensus       503 l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fsp-dg~~Latgs~Dg~I~IWdl~~~  581 (784)
                      +......|.+++|..||++||+|+..|.|+|||+++...++.+.+|..+|..+.|+| ++..|++|++|+.+++||+.+.
T Consensus        64 ~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a  143 (487)
T KOG0310|consen   64 FSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA  143 (487)
T ss_pred             HHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc
Confidence            334567799999999999999999999999999888788899999999999999999 6677889999999999999987


Q ss_pred             cceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC-eeEEe--ecCCeeEEEEecCCCEEEEEECCCcEEE
Q 047260          582 NFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPF-LCTHI--TKGGTAQVRFQPRIGQLLAAASDKVVSI  658 (784)
Q Consensus       582 ~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~-~~~~~--~~~~v~~v~fsp~~~~Ll~~s~Dg~I~I  658 (784)
                      . ....+.+|++.|.|.+|+|....++++|+.||.|++||++.. ..+..  +..+|..+.+-|.|..+++++. ..|+|
T Consensus       144 ~-v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkV  221 (487)
T KOG0310|consen  144 Y-VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGG-NSVKV  221 (487)
T ss_pred             E-EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEE
Confidence            6 466788999999999999999999999999999999999976 44433  4478999999999887776654 78999


Q ss_pred             EECCCC-eEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECC
Q 047260          659 FDIETD-RQTHSLQGHAELVNYICWDTNGDYLASVS-QNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGI  736 (784)
Q Consensus       659 wDl~t~-~~i~~l~~h~~~V~sl~~spdg~~Lasgs-dd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~d  736 (784)
                      ||+-+| +.+..+..|...|+|+++..++..|++++ |+.|+|||+.+.+.+..+.-. ++|.+|+.+|++..+++|..+
T Consensus       222 WDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~-~pvLsiavs~dd~t~viGmsn  300 (487)
T KOG0310|consen  222 WDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYP-GPVLSIAVSPDDQTVVIGMSN  300 (487)
T ss_pred             EEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecc-cceeeEEecCCCceEEEeccc
Confidence            999965 55555556999999999999999999988 669999999999999888654 889999999999999999999


Q ss_pred             CeEEEEECCC
Q 047260          737 SSLELWNMAE  746 (784)
Q Consensus       737 g~I~Iwdl~~  746 (784)
                      |.+.+-+...
T Consensus       301 Glv~~rr~~~  310 (487)
T KOG0310|consen  301 GLVSIRRREV  310 (487)
T ss_pred             ceeeeehhhc
Confidence            9877764433

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.93  E-value=5.4e-25  Score=234.70  Aligned_cols=285  Identities=15%  Similarity=0.233  Sum_probs=226.2

Q ss_pred             CCCCCcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEE
Q 047260          435 EGTGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCH  514 (784)
Q Consensus       435 ~~~~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~  514 (784)
                      .+++.++++..+.+...+|+ +||+|.+|+.|+.......-                   ..|+.+.-  .....|.++.
T Consensus       164 ~hgtk~Vsal~~Dp~GaR~~-sGs~Dy~v~~wDf~gMdas~-------------------~~fr~l~P--~E~h~i~sl~  221 (641)
T KOG0772|consen  164 KHGTKIVSALAVDPSGARFV-SGSLDYTVKFWDFQGMDASM-------------------RSFRQLQP--CETHQINSLQ  221 (641)
T ss_pred             cCCceEEEEeeecCCCceee-eccccceEEEEecccccccc-------------------hhhhccCc--ccccccceee
Confidence            34557788888889999998 59999999999885443111                   11222221  2345699999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCceeeec------------CCCCCCeEEEEEccC-CCEEEEEeCCCeEEEEcCCCC
Q 047260          515 FSSDGKLLASSGHDRKVVLWNMDTLQTESTP------------EDHKSVVTDVRFRPN-SSQLATASVDKSVRLWDAANP  581 (784)
Q Consensus       515 fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l------------~~h~~~It~i~fspd-g~~Latgs~Dg~I~IWdl~~~  581 (784)
                      |++.|..|++.+....++|+|-+........            ++|...++|.+|+|+ ...|+|++.||++||||+.+.
T Consensus       222 ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~  301 (641)
T KOG0772|consen  222 YSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNT  301 (641)
T ss_pred             ecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCc
Confidence            9999998888888889999998765544433            479999999999994 467999999999999999876


Q ss_pred             cceeeecc-----CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC------eeEEeecC--CeeEEEEecCCCEEE
Q 047260          582 NFCSQAYT-----GHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPF------LCTHITKG--GTAQVRFQPRIGQLL  648 (784)
Q Consensus       582 ~~~~~~~~-----~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~------~~~~~~~~--~v~~v~fsp~~~~Ll  648 (784)
                      +.-...+.     +..-+++.++|++++. +|++|..||.|.+|+....      .....|..  .+++|.|+++|++|+
T Consensus       302 k~q~qVik~k~~~g~Rv~~tsC~~nrdg~-~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~Ll  380 (641)
T KOG0772|consen  302 KSQLQVIKTKPAGGKRVPVTSCAWNRDGK-LIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLL  380 (641)
T ss_pred             hhheeEEeeccCCCcccCceeeecCCCcc-hhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhh
Confidence            64333332     3445789999999998 5888888999999998642      12223333  799999999999999


Q ss_pred             EEECCCcEEEEECCCC-eEEEEEeCC--CCCEEEEEEcCCCCEEEEEe-------CCeEEEEeCCCCceEEEeccCCCce
Q 047260          649 AAASDKVVSIFDIETD-RQTHSLQGH--AELVNYICWDTNGDYLASVS-------QNLVKVWSMASGECIQELSSNGNQF  718 (784)
Q Consensus       649 ~~s~Dg~I~IwDl~t~-~~i~~l~~h--~~~V~sl~~spdg~~Lasgs-------dd~I~IwDl~t~~~i~~l~~~~~~I  718 (784)
                      +-+.|+++++||++.. +++....+-  .-+-+.++|+|+.++|++|.       .+.+.+||..+...+.++......|
T Consensus       381 SRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSv  460 (641)
T KOG0772|consen  381 SRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASV  460 (641)
T ss_pred             hccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceE
Confidence            9999999999999986 555555542  33567899999999999986       2379999999999999998888999


Q ss_pred             EEEEEecCCCEEEEEECCCeEEEE
Q 047260          719 HSCVFHPSYSTLLVVGGISSLELW  742 (784)
Q Consensus       719 ~sl~fspdg~~L~s~s~dg~I~Iw  742 (784)
                      ..|.|+|.-+.|++++.||.++||
T Consensus       461 v~~~WhpkLNQi~~gsgdG~~~vy  484 (641)
T KOG0772|consen  461 VRCLWHPKLNQIFAGSGDGTAHVY  484 (641)
T ss_pred             EEEeecchhhheeeecCCCceEEE
Confidence            999999999999999999999987

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=2.4e-24  Score=237.77  Aligned_cols=237  Identities=20%  Similarity=0.340  Sum_probs=212.6

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCC-CCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCccee
Q 047260          507 NSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPED-HKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCS  585 (784)
Q Consensus       507 ~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~-h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~  585 (784)
                      .+.|+++.|+++|.+||+|..+|.|.|||..+.+.+..+.+ |...|-+++|.  +..+.+|+.|+.|.++|++......
T Consensus       217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~  294 (484)
T KOG0305|consen  217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVV  294 (484)
T ss_pred             CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhh
Confidence            78899999999999999999999999999999999999998 99999999997  6789999999999999999877666


Q ss_pred             eeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCC---CCeeEEeecCCeeEEEEecCCCE-EEEEEC--CCcEEEE
Q 047260          586 QAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSIN---PFLCTHITKGGTAQVRFQPRIGQ-LLAAAS--DKVVSIF  659 (784)
Q Consensus       586 ~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~---~~~~~~~~~~~v~~v~fsp~~~~-Ll~~s~--Dg~I~Iw  659 (784)
                      ..+.+|...|..+.|++++. .+++|+.|+.|.|||..   ....+..+...|..++|+|...- |++|+.  |+.|++|
T Consensus       295 ~~~~~H~qeVCgLkws~d~~-~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fw  373 (484)
T KOG0305|consen  295 STLQGHRQEVCGLKWSPDGN-QLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFW  373 (484)
T ss_pred             hhhhcccceeeeeEECCCCC-eeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEE
Confidence            66889999999999999987 89999999999999994   45556667789999999997655 455443  9999999


Q ss_pred             ECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe---CCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECC
Q 047260          660 DIETDRQTHSLQGHAELVNYICWDTNGDYLASVS---QNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGI  736 (784)
Q Consensus       660 Dl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgs---dd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~d  736 (784)
                      |..+++.+..+. ....|.+|.|++..+-|+++.   ++.|.||+..+.+.+..+.+|...|..++++||+..|++++.|
T Consensus       374 n~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~D  452 (484)
T KOG0305|consen  374 NTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAAD  452 (484)
T ss_pred             EcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEeccc
Confidence            999999988876 567899999999887666654   4599999999999999999999999999999999999999999


Q ss_pred             CeEEEEECCCC
Q 047260          737 SSLELWNMAEN  747 (784)
Q Consensus       737 g~I~Iwdl~~~  747 (784)
                      .++++|++-+.
T Consensus       453 ETlrfw~~f~~  463 (484)
T KOG0305|consen  453 ETLRFWNLFDE  463 (484)
T ss_pred             CcEEeccccCC
Confidence            99999998775

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=4.7e-25  Score=217.63  Aligned_cols=245  Identities=19%  Similarity=0.308  Sum_probs=206.0

Q ss_pred             eEEeEeecCCCceEEEEEcCCC-CEEEEEeCCCeEEEEECC-CCceeeecCCCCCCeEEEEEcc-CCCEEEEEeCCCeEE
Q 047260          498 CEVGCIRSRNSKVTCCHFSSDG-KLLASSGHDRKVVLWNMD-TLQTESTPEDHKSVVTDVRFRP-NSSQLATASVDKSVR  574 (784)
Q Consensus       498 ~~i~~l~~H~~~V~~l~fspdg-~~Lasgs~Dg~I~IWd~~-t~~~~~~l~~h~~~It~i~fsp-dg~~Latgs~Dg~I~  574 (784)
                      .+...+. -.+.+..++|+++. +.+++++.||+++|||+. ...++..+++|...|.++.|++ +...++++|.|++|+
T Consensus        52 ~e~~s~d-~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiK  130 (311)
T KOG0277|consen   52 QECQSYD-TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIK  130 (311)
T ss_pred             EEEEeee-cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceE
Confidence            4444443 46779999999954 578889999999999975 4568889999999999999999 667788999999999


Q ss_pred             EEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC---eeEEeecCCeeEEEEecCCC-EEEEE
Q 047260          575 LWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPF---LCTHITKGGTAQVRFQPRIG-QLLAA  650 (784)
Q Consensus       575 IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~---~~~~~~~~~v~~v~fsp~~~-~Ll~~  650 (784)
                      +|+...++ .+.++.+|...|....|+|....+|++++.|+.+++||++..   ..+..+...+.++.|+.... .++++
T Consensus       131 LW~~~r~~-Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg  209 (311)
T KOG0277|consen  131 LWDPNRPN-SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATG  209 (311)
T ss_pred             eecCCCCc-ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEec
Confidence            99998766 678899999999999999999999999999999999999852   23444556888999987554 56677


Q ss_pred             ECCCcEEEEECCCC-eEEEEEeCCCCCEEEEEEcCCC-CEEEEEeCC-eEEEEeCCCC-ceEEEeccCCCceEEEEEecC
Q 047260          651 ASDKVVSIFDIETD-RQTHSLQGHAELVNYICWDTNG-DYLASVSQN-LVKVWSMASG-ECIQELSSNGNQFHSCVFHPS  726 (784)
Q Consensus       651 s~Dg~I~IwDl~t~-~~i~~l~~h~~~V~sl~~spdg-~~Lasgsdd-~I~IwDl~t~-~~i~~l~~~~~~I~sl~fspd  726 (784)
                      +.|+.|++||+++- .++..+.+|.-.|+.|+|+|.. .+|++++-| +++|||...+ .++.+...|..-+..+.|++.
T Consensus       210 ~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~  289 (311)
T KOG0277|consen  210 GVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLF  289 (311)
T ss_pred             CCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccc
Confidence            77999999999985 5788889999999999999964 578899988 9999999854 567777788888888888874


Q ss_pred             -CCEEEEEECCCeEEEEEC
Q 047260          727 -YSTLLVVGGISSLELWNM  744 (784)
Q Consensus       727 -g~~L~s~s~dg~I~Iwdl  744 (784)
                       ..++++++-|+.++||+.
T Consensus       290 ~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  290 DPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             cCceeeecccccceeeecc
Confidence             457999999999999984

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.93  E-value=2.2e-23  Score=233.45  Aligned_cols=330  Identities=18%  Similarity=0.256  Sum_probs=261.0

Q ss_pred             ceeeeecCCCCCCcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecC
Q 047260          427 KTLMMNGSEGTGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSR  506 (784)
Q Consensus       427 k~~~~~g~~~~~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H  506 (784)
                      ...+++...+..+.+++....+-.+ ++++|..+|.|.+++...+.                          .+.+|+.-
T Consensus       191 t~K~v~~f~~~~s~IT~ieqsPaLD-VVaiG~~~G~ViifNlK~dk--------------------------il~sFk~d  243 (910)
T KOG1539|consen  191 TGKVVYTFQEFFSRITAIEQSPALD-VVAIGLENGTVIIFNLKFDK--------------------------ILMSFKQD  243 (910)
T ss_pred             cCcEEEEecccccceeEeccCCcce-EEEEeccCceEEEEEcccCc--------------------------EEEEEEcc
Confidence            3344555555556666666655554 45689999999999774433                          34555544


Q ss_pred             CCceEEEEEcCCCC-EEEEEeCCCeEEEEECCCCceeeecC-CCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcc-
Q 047260          507 NSKVTCCHFSSDGK-LLASSGHDRKVVLWNMDTLQTESTPE-DHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNF-  583 (784)
Q Consensus       507 ~~~V~~l~fspdg~-~Lasgs~Dg~I~IWd~~t~~~~~~l~-~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~-  583 (784)
                      .+.|+.|+|.-||+ .+|+|+..|.+.+||++..+....+. .|.+.|+.+.|.+....+++++.|..+++|-.+++.. 
T Consensus       244 ~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~  323 (910)
T KOG1539|consen  244 WGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGV  323 (910)
T ss_pred             ccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCc
Confidence            59999999999998 56778888999999999888877776 7999999999999999999999999999987664432 


Q ss_pred             --eeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEe----------------------------------------
Q 047260          584 --CSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWS----------------------------------------  621 (784)
Q Consensus       584 --~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwD----------------------------------------  621 (784)
                        .++...||..+..||.|.......+.+.+.|..++.++                                        
T Consensus       324 pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~  403 (910)
T KOG1539|consen  324 PRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAF  403 (910)
T ss_pred             chheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeec
Confidence              44556689999999998855555566666665554443                                        


Q ss_pred             -------------------------CCCCe---eEEee------cCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEE
Q 047260          622 -------------------------INPFL---CTHIT------KGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQT  667 (784)
Q Consensus       622 -------------------------l~~~~---~~~~~------~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i  667 (784)
                                               ++...   .+...      ...+++++.++.|+..+.|++.|.|-+|++.+|-..
T Consensus       404 ~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r  483 (910)
T KOG1539|consen  404 ENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHR  483 (910)
T ss_pred             ccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeee
Confidence                                     32211   11111      145678899999999999999999999999999888


Q ss_pred             EEE---eCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEeCCCCce------------------------------------
Q 047260          668 HSL---QGHAELVNYICWDTNGDYLASVS-QNLVKVWSMASGEC------------------------------------  707 (784)
Q Consensus       668 ~~l---~~h~~~V~sl~~spdg~~Lasgs-dd~I~IwDl~t~~~------------------------------------  707 (784)
                      .++   ..|..+|+.++.+.-++.+++++ +|.+++||+.....                                    
T Consensus       484 ~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~  563 (910)
T KOG1539|consen  484 KSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDV  563 (910)
T ss_pred             cccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEc
Confidence            888   47999999999998888777766 66888888765432                                    


Q ss_pred             -----EEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEECC-CcEE
Q 047260          708 -----IQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHD-SSVK  781 (784)
Q Consensus       708 -----i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs~D-G~V~  781 (784)
                           +++|.+|.+.|++++|+|||++|++++.|++|++||+.++.++....-+.+++++.|+|+|.+|||+..| .-|+
T Consensus       564 ~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIy  643 (910)
T KOG1539|consen  564 VTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIY  643 (910)
T ss_pred             hhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEE
Confidence                 2344578899999999999999999999999999999999999888889999999999999999999988 6699


Q ss_pred             Ee
Q 047260          782 LW  783 (784)
Q Consensus       782 IW  783 (784)
                      +|
T Consensus       644 lW  645 (910)
T KOG1539|consen  644 LW  645 (910)
T ss_pred             EE
Confidence            98

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.93  E-value=1.3e-24  Score=250.69  Aligned_cols=290  Identities=21%  Similarity=0.312  Sum_probs=234.0

Q ss_pred             ccccccccCCCceEeccc--cCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCC
Q 047260          441 ASASNLLEDIDRFADVGS--IDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSD  518 (784)
Q Consensus       441 ~ss~~~~~~~~~ll~~gS--~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspd  518 (784)
                      +-++...++..+|. +|.  .|+.+++|....=.+...         +.     ...--..+.+...|.+.|+|+.|+||
T Consensus        16 IfSIdv~pdg~~~a-TgGq~~d~~~~iW~~~~vl~~~~---------~~-----~~~l~k~l~~m~~h~~sv~CVR~S~d   80 (942)
T KOG0973|consen   16 IFSIDVHPDGVKFA-TGGQVLDGGIVIWSQDPVLDEKE---------EK-----NENLPKHLCTMDDHDGSVNCVRFSPD   80 (942)
T ss_pred             EEEEEecCCceeEe-cCCccccccceeeccccccchhh---------hh-----hcccchhheeeccccCceeEEEECCC
Confidence            33455557777776 466  788888885421110000         00     00012356677889999999999999


Q ss_pred             CCEEEEEeCCCeEEEEECCC------------------CceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCC
Q 047260          519 GKLLASSGHDRKVVLWNMDT------------------LQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAAN  580 (784)
Q Consensus       519 g~~Lasgs~Dg~I~IWd~~t------------------~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~  580 (784)
                      |.+||+|++|+.|.||+...                  .+.+..+.+|...|.+++|+|++.+|++++.|++|.|||..+
T Consensus        81 G~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~t  160 (942)
T KOG0973|consen   81 GSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKT  160 (942)
T ss_pred             CCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEcccc
Confidence            99999999999999998762                  246778889999999999999999999999999999999999


Q ss_pred             CcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---------CCeeEEEEecCCCEEEEEE
Q 047260          581 PNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK---------GGTAQVRFQPRIGQLLAAA  651 (784)
Q Consensus       581 ~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---------~~v~~v~fsp~~~~Ll~~s  651 (784)
                      . .....+.+|.+.|..+.|.|-|. +|++-++|++|+||++....+.+...         .....+.|+|||.+|++..
T Consensus       161 F-~~~~vl~~H~s~VKGvs~DP~Gk-y~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~n  238 (942)
T KOG0973|consen  161 F-ELLKVLRGHQSLVKGVSWDPIGK-YFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPN  238 (942)
T ss_pred             c-eeeeeeecccccccceEECCccC-eeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchh
Confidence            8 58899999999999999999998 88899999999999988765555544         2356788999999999876


Q ss_pred             C----CCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCC-----CC------------EEEEEeCC-eEEEEeCCCCceEE
Q 047260          652 S----DKVVSIFDIETDRQTHSLQGHAELVNYICWDTN-----GD------------YLASVSQN-LVKVWSMASGECIQ  709 (784)
Q Consensus       652 ~----Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spd-----g~------------~Lasgsdd-~I~IwDl~t~~~i~  709 (784)
                      .    ...+.|.+-.+.+.-..|.+|..++.++.|+|.     ..            .+|+|+.| +|.||.....+++.
T Consensus       239 A~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~  318 (942)
T KOG0973|consen  239 AVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLF  318 (942)
T ss_pred             hccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchh
Confidence            5    357899998888888999999999999999972     11            56677755 99999998877765


Q ss_pred             Eec-cCCCceEEEEEecCCCEEEEEECCCeEEEEECCCC
Q 047260          710 ELS-SNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAEN  747 (784)
Q Consensus       710 ~l~-~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~  747 (784)
                      .+. -....|.++.|+|||-.|++++.||+|.++.++..
T Consensus       319 vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~  357 (942)
T KOG0973|consen  319 VIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK  357 (942)
T ss_pred             hhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence            543 34578999999999999999999999999998764

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=7.1e-25  Score=221.44  Aligned_cols=287  Identities=16%  Similarity=0.292  Sum_probs=243.5

Q ss_pred             cceeEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEE
Q 047260          495 FTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVR  574 (784)
Q Consensus       495 ~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~  574 (784)
                      ..+..++.+.+|.+.|+.++.......+.+++.|.+.+||.++++.++..+.+|.+.|++|.|++.+.++++++.|++.+
T Consensus       136 ~~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taH  215 (481)
T KOG0300|consen  136 VKFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAH  215 (481)
T ss_pred             eeEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchH
Confidence            34567788899999999999988888999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcC------CCC---------------------------------cceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCC
Q 047260          575 LWDA------ANP---------------------------------NFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDN  615 (784)
Q Consensus       575 IWdl------~~~---------------------------------~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg  615 (784)
                      ||..      ..+                                 ..++..+.+|.+.|.+..|...+. -+++++.|.
T Consensus       216 IW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~-Q~vTaSWDR  294 (481)
T KOG0300|consen  216 IWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQ-QMVTASWDR  294 (481)
T ss_pred             HHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcc-eeeeeeccc
Confidence            9972      110                                 012345678999999999987766 778999999


Q ss_pred             eEEEEeCCCCeeEEeecC---CeeEEEEecCCCEEEEEECCCcEEEEECCCC-eEEEEEeCCCCCEEEEEEcCCCCEEEE
Q 047260          616 EIQYWSINPFLCTHITKG---GTAQVRFQPRIGQLLAAASDKVVSIFDIETD-RQTHSLQGHAELVNYICWDTNGDYLAS  691 (784)
Q Consensus       616 ~I~iwDl~~~~~~~~~~~---~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~-~~i~~l~~h~~~V~sl~~spdg~~Las  691 (784)
                      +..+||++++..+..+.+   ..+.++-+|..+.+++.+.|.+.++||++.. ..+..|.+|...|+++.|..+.+ +++
T Consensus       295 TAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~-vVS  373 (481)
T KOG0300|consen  295 TANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR-VVS  373 (481)
T ss_pred             cceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCc-eee
Confidence            999999999998887765   4566778999888999999999999999854 56778999999999999987654 677


Q ss_pred             EeCC-eEEEEeCCCC-ceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceEEe-----cccCCceEEEEE
Q 047260          692 VSQN-LVKVWSMASG-ECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTI-----AAHENIISALAQ  764 (784)
Q Consensus       692 gsdd-~I~IwDl~t~-~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~-----~~h~~~V~slaf  764 (784)
                      ++|| +|+|||+++. .++.++.. .++++.++++..++.|+.--.+..|++||++......+     .+|...|+|++|
T Consensus       374 gSDDrTvKvWdLrNMRsplATIRt-dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW  452 (481)
T KOG0300|consen  374 GSDDRTVKVWDLRNMRSPLATIRT-DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAW  452 (481)
T ss_pred             cCCCceEEEeeeccccCcceeeec-CCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeec
Confidence            7777 9999999986 46666654 47889999999888888888888999999998876533     489999999999


Q ss_pred             eCCCC--EEEEEECCCcEEEeC
Q 047260          765 SPVTG--MVASASHDSSVKLWK  784 (784)
Q Consensus       765 spdg~--~LaSgs~DG~V~IWd  784 (784)
                      ..+..  -|++|+.|..|.-|+
T Consensus       453 ~eehp~cnLftcGFDR~v~gW~  474 (481)
T KOG0300|consen  453 LEEHPACNLFTCGFDRMVAGWK  474 (481)
T ss_pred             cccCcccccccccccceeeeeE
Confidence            96643  688999999998885

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.93  E-value=2.5e-24  Score=237.08  Aligned_cols=275  Identities=15%  Similarity=0.258  Sum_probs=234.1

Q ss_pred             eEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcee--eecCCCCCCeEE-EEEcc-CCCEEEEEeCCCeE
Q 047260          498 CEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTE--STPEDHKSVVTD-VRFRP-NSSQLATASVDKSV  573 (784)
Q Consensus       498 ~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~--~~l~~h~~~It~-i~fsp-dg~~Latgs~Dg~I  573 (784)
                      ..-+++.+|+..|..+++.++. .+++++.||+++||+-.....+  ..+.+|.+.|.+ +++.+ ++-.|++|+.|++|
T Consensus         5 ~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i   83 (745)
T KOG0301|consen    5 KLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTI   83 (745)
T ss_pred             eeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceE
Confidence            4456789999999999887554 7899999999999998654433  456678888877 88886 55569999999999


Q ss_pred             EEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC-eeEEeecCCeeEEEEecCCCEEEEEEC
Q 047260          574 RLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPF-LCTHITKGGTAQVRFQPRIGQLLAAAS  652 (784)
Q Consensus       574 ~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~-~~~~~~~~~v~~v~fsp~~~~Ll~~s~  652 (784)
                      .+|...... ...++.+|...|+|+....++.  +++|+.|.++++|-+... .....|...|..+..-|+. .+++|+.
T Consensus        84 ~v~~~~~~~-P~~~LkgH~snVC~ls~~~~~~--~iSgSWD~TakvW~~~~l~~~l~gH~asVWAv~~l~e~-~~vTgsa  159 (745)
T KOG0301|consen   84 IVFKLSQAE-PLYTLKGHKSNVCSLSIGEDGT--LISGSWDSTAKVWRIGELVYSLQGHTASVWAVASLPEN-TYVTGSA  159 (745)
T ss_pred             EEEecCCCC-chhhhhccccceeeeecCCcCc--eEecccccceEEecchhhhcccCCcchheeeeeecCCC-cEEeccC
Confidence            999998866 7888999999999999877664  889999999999988653 3345566788889888886 8999999


Q ss_pred             CCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEE
Q 047260          653 DKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLV  732 (784)
Q Consensus       653 Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s  732 (784)
                      |.+|++|.-  ++.+++|.+|.+.|+.+++-+++.+|.++.|+.|++|++ +|+++.++.+|.+-|+++....++..|++
T Consensus       160 DKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs  236 (745)
T KOG0301|consen  160 DKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVS  236 (745)
T ss_pred             cceeeeccC--CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEE
Confidence            999999986  788899999999999999999988887777889999999 89999999999999999998888889999


Q ss_pred             EECCCeEEEEECCCCceEEecccCC-ceEEEEEeCCCCEEEEEECCCcEEEe
Q 047260          733 VGGISSLELWNMAENKSMTIAAHEN-IISALAQSPVTGMVASASHDSSVKLW  783 (784)
Q Consensus       733 ~s~dg~I~Iwdl~~~~~~~~~~h~~-~V~slafspdg~~LaSgs~DG~V~IW  783 (784)
                      ++.|++++||+..  ++.....|.. .|+++.+-++|. |++|++||.|+||
T Consensus       237 ~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVf  285 (745)
T KOG0301|consen  237 TGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVF  285 (745)
T ss_pred             ecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEE
Confidence            9999999999987  5555555555 899998887764 6678899999998

>PTZ00421 coronin; Provisional

Probab=99.93  E-value=2e-23  Score=237.75  Aligned_cols=223  Identities=14%  Similarity=0.238  Sum_probs=182.6

Q ss_pred             EeecCCCceEEEEEcC-CCCEEEEEeCCCeEEEEECCCC-------ceeeecCCCCCCeEEEEEccCC-CEEEEEeCCCe
Q 047260          502 CIRSRNSKVTCCHFSS-DGKLLASSGHDRKVVLWNMDTL-------QTESTPEDHKSVVTDVRFRPNS-SQLATASVDKS  572 (784)
Q Consensus       502 ~l~~H~~~V~~l~fsp-dg~~Lasgs~Dg~I~IWd~~t~-------~~~~~l~~h~~~It~i~fspdg-~~Latgs~Dg~  572 (784)
                      .+.+|.+.|++++|+| ++.+||+|+.|++|+|||+.+.       ..+..+.+|...|.+|+|+|++ .+|++++.|++
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt  149 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV  149 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence            3678999999999999 8899999999999999999764       3466788999999999999975 69999999999


Q ss_pred             EEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCC----eeEEEEecCCCEEE
Q 047260          573 VRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGG----TAQVRFQPRIGQLL  648 (784)
Q Consensus       573 I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~----v~~v~fsp~~~~Ll  648 (784)
                      |+|||++++. ....+.+|...|.+++|+|++. +|++++.|+.|++||+++...+..+..+    ...+.|.+++..++
T Consensus       150 VrIWDl~tg~-~~~~l~~h~~~V~sla~spdG~-lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~iv  227 (493)
T PTZ00421        150 VNVWDVERGK-AVEVIKCHSDQITSLEWNLDGS-LLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLII  227 (493)
T ss_pred             EEEEECCCCe-EEEEEcCCCCceEEEEEECCCC-EEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEE
Confidence            9999999876 5667788999999999999986 7889999999999999988776655422    34677888888888


Q ss_pred             EEE----CCCcEEEEECCCCe-EEEEEeC-CCCCEEEEEEcCCCCEEEEEe--CCeEEEEeCCCCceEEEecc-CCCceE
Q 047260          649 AAA----SDKVVSIFDIETDR-QTHSLQG-HAELVNYICWDTNGDYLASVS--QNLVKVWSMASGECIQELSS-NGNQFH  719 (784)
Q Consensus       649 ~~s----~Dg~I~IwDl~t~~-~i~~l~~-h~~~V~sl~~spdg~~Lasgs--dd~I~IwDl~t~~~i~~l~~-~~~~I~  719 (784)
                      +++    .|+.|++||+++.. ++..+.. +...+....|++++.+|++++  |+.|++||+.+++++..... +..++.
T Consensus       228 t~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~  307 (493)
T PTZ00421        228 TLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHK  307 (493)
T ss_pred             EEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCc
Confidence            765    37899999998764 4443332 334566678999999988876  55999999999987766543 345677


Q ss_pred             EEEEecC
Q 047260          720 SCVFHPS  726 (784)
Q Consensus       720 sl~fspd  726 (784)
                      .++|.|.
T Consensus       308 g~~~~pk  314 (493)
T PTZ00421        308 GLCMMPK  314 (493)
T ss_pred             ceEeccc
Confidence            8888885

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.93  E-value=1.5e-24  Score=214.95  Aligned_cols=239  Identities=23%  Similarity=0.358  Sum_probs=211.0

Q ss_pred             eecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcc-eeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEe
Q 047260          543 STPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNF-CSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWS  621 (784)
Q Consensus       543 ~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~-~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwD  621 (784)
                      +.+.+|...|.+|+|+.+|..|++|+.|+++++|+++..+. ......+|.+.|-.++|+|..+.+|++++.|..|++||
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd   93 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD   93 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence            45678999999999999999999999999999999987542 22345689999999999999999999999999999999


Q ss_pred             CCCCeeEEeec--CCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEE
Q 047260          622 INPFLCTHITK--GGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVS-QNLVK  698 (784)
Q Consensus       622 l~~~~~~~~~~--~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgs-dd~I~  698 (784)
                      ++..++.....  +.-.-+.|+|++.+++++..|..|.++|.++.+.....+ ....+..++|+.++.+++... -|+|.
T Consensus        94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~  172 (313)
T KOG1407|consen   94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVE  172 (313)
T ss_pred             eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceEE
Confidence            99999887765  555678899999999999999999999999888776655 556778889987776655544 57999


Q ss_pred             EEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE-EecccCCceEEEEEeCCCCEEEEEECC
Q 047260          699 VWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHD  777 (784)
Q Consensus       699 IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg~~LaSgs~D  777 (784)
                      |.....-+++..+..|.....|+.|+|+|+++++|+.|-.+.+||+.+--+. .+..++-+|+.|.|+.||++||+|+.|
T Consensus       173 ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSED  252 (313)
T KOG1407|consen  173 ILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASED  252 (313)
T ss_pred             EEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCcc
Confidence            9999999999999999999999999999999999999999999999998887 566899999999999999999999999


Q ss_pred             CcEEE
Q 047260          778 SSVKL  782 (784)
Q Consensus       778 G~V~I  782 (784)
                      ..|-|
T Consensus       253 h~IDI  257 (313)
T KOG1407|consen  253 HFIDI  257 (313)
T ss_pred             ceEEe
Confidence            88754

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.93  E-value=9.7e-24  Score=209.69  Aligned_cols=279  Identities=17%  Similarity=0.156  Sum_probs=229.3

Q ss_pred             CCCcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEc
Q 047260          437 TGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFS  516 (784)
Q Consensus       437 ~~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fs  516 (784)
                      +.....-+.+..+.+ |+.+++.|....+|.+.++.                          .+.++.+|++.|+||+.+
T Consensus         9 HERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nGe--------------------------rlGty~GHtGavW~~Did   61 (327)
T KOG0643|consen    9 HERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNGE--------------------------RLGTYDGHTGAVWCCDID   61 (327)
T ss_pred             CccccceEEecCCCc-EEEEecCCCCceEEEecCCc--------------------------eeeeecCCCceEEEEEec
Confidence            444456666655555 45568899999999875543                          578899999999999999


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeC-----CCeEEEEcCCCC------ccee
Q 047260          517 SDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASV-----DKSVRLWDAANP------NFCS  585 (784)
Q Consensus       517 pdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~-----Dg~I~IWdl~~~------~~~~  585 (784)
                      .+.++|++|+.|.++++||+++++.+..++ ...+|..+.|+++|++++.+..     .+.|.++|++..      +.+.
T Consensus        62 ~~s~~liTGSAD~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~  140 (327)
T KOG0643|consen   62 WDSKHLITGSADQTAKLWDVETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPY  140 (327)
T ss_pred             CCcceeeeccccceeEEEEcCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCce
Confidence            999999999999999999999999999985 6788999999999998887754     368999999842      2345


Q ss_pred             eeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeE----EeecCCeeEEEEecCCCEEEEEECCCcEEEEEC
Q 047260          586 QAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCT----HITKGGTAQVRFQPRIGQLLAAASDKVVSIFDI  661 (784)
Q Consensus       586 ~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~----~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl  661 (784)
                      ..+..+.+.++.+-|.|-+. .+++|..||.|.+||++++..+    ..+...|+.+.++++..++++++.|.+-++||.
T Consensus       141 ~kI~t~~skit~a~Wg~l~~-~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~  219 (327)
T KOG0643|consen  141 LKIPTPDSKITSALWGPLGE-TIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDV  219 (327)
T ss_pred             EEecCCccceeeeeecccCC-EEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeec
Confidence            55666779999999999987 7778999999999999986443    345578999999999999999999999999999


Q ss_pred             CCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CC--eEEEEeCCCC------------ceEEEeccCCCceEEEEEecC
Q 047260          662 ETDRQTHSLQGHAELVNYICWDTNGDYLASVS-QN--LVKVWSMASG------------ECIQELSSNGNQFHSCVFHPS  726 (784)
Q Consensus       662 ~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgs-dd--~I~IwDl~t~------------~~i~~l~~~~~~I~sl~fspd  726 (784)
                      ++...++++. ...+|++.+++|...+++.++ .+  .|.--+.+.|            +.+..+++|-++|++++|+|+
T Consensus       220 ~tl~v~Kty~-te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPd  298 (327)
T KOG0643|consen  220 RTLEVLKTYT-TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPD  298 (327)
T ss_pred             cceeeEEEee-ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCC
Confidence            9999999887 677999999999877776655 22  3333333333            456778899999999999999


Q ss_pred             CCEEEEEECCCeEEEEECC
Q 047260          727 YSTLLVVGGISSLELWNMA  745 (784)
Q Consensus       727 g~~L~s~s~dg~I~Iwdl~  745 (784)
                      |+..++|+.||.|++.-..
T Consensus       299 GksYsSGGEDG~VR~h~Fd  317 (327)
T KOG0643|consen  299 GKSYSSGGEDGYVRLHHFD  317 (327)
T ss_pred             CcccccCCCCceEEEEEec
Confidence            9999999999999887544

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.93  E-value=2.4e-24  Score=217.40  Aligned_cols=296  Identities=16%  Similarity=0.263  Sum_probs=233.2

Q ss_pred             cccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCC
Q 047260          440 LASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDG  519 (784)
Q Consensus       440 ~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg  519 (784)
                      ...+..|.+| ..|+++||.|..++++++.     |.+... +  +...........-..|++|..|.+.|+++.|+|..
T Consensus       114 ~cR~aafs~D-G~lvATGsaD~SIKildve-----rmlaks-~--~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre  184 (430)
T KOG0640|consen  114 PCRAAAFSPD-GSLVATGSADASIKILDVE-----RMLAKS-K--PKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE  184 (430)
T ss_pred             ceeeeeeCCC-CcEEEccCCcceEEEeehh-----hhhhhc-c--hhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence            3445556444 4566789999999999774     222211 0  00000011111235689999999999999999999


Q ss_pred             CEEEEEeCCCeEEEEECCCCceeeec--CCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeee--ccCCCCCe
Q 047260          520 KLLASSGHDRKVVLWNMDTLQTESTP--EDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQA--YTGHSSPI  595 (784)
Q Consensus       520 ~~Lasgs~Dg~I~IWd~~t~~~~~~l--~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~--~~~h~~~V  595 (784)
                      .+|++|+.|++|++||+..-...+.+  .....+|.+|.|+|.|.+|+.|....++++||+++-...+..  -..|.+.|
T Consensus       185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai  264 (430)
T KOG0640|consen  185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAI  264 (430)
T ss_pred             heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccce
Confidence            99999999999999999754333222  245578999999999999999999999999999986633322  24689999


Q ss_pred             EEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec-----CCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEE
Q 047260          596 MSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK-----GGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSL  670 (784)
Q Consensus       596 ~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~-----~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l  670 (784)
                      +++.+++.+. +.++++.||.|++||--+.+|+..+.     ..|++..|..+++++++.+.|..|++|.+.+++.+..+
T Consensus       265 ~~V~Ys~t~~-lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~Y  343 (430)
T KOG0640|consen  265 TQVRYSSTGS-LYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEY  343 (430)
T ss_pred             eEEEecCCcc-EEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEE
Confidence            9999999987 88999999999999998888887664     56888899999999999999999999999999999988


Q ss_pred             eCCC-----CCEEEEEEcCCCCEEEEEeCC--eEEEEeCCCCceEEEec-cCCCceEEEEEecCCCEEEEEECCCeEEEE
Q 047260          671 QGHA-----ELVNYICWDTNGDYLASVSQN--LVKVWSMASGECIQELS-SNGNQFHSCVFHPSYSTLLVVGGISSLELW  742 (784)
Q Consensus       671 ~~h~-----~~V~sl~~spdg~~Lasgsdd--~I~IwDl~t~~~i~~l~-~~~~~I~sl~fspdg~~L~s~s~dg~I~Iw  742 (784)
                      .+-.     ..-+...|+....|++.-.+.  .+.-||.++...+..+. +|.+.+..+.-+|.+..+++|+.|-.+++|
T Consensus       344 tGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFW  423 (430)
T KOG0640|consen  344 TGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFW  423 (430)
T ss_pred             ecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeee
Confidence            7531     122445688888888887754  89999999987665553 789999999999999999999999999999


Q ss_pred             ECC
Q 047260          743 NMA  745 (784)
Q Consensus       743 dl~  745 (784)
                      --+
T Consensus       424 yrr  426 (430)
T KOG0640|consen  424 YRR  426 (430)
T ss_pred             eec
Confidence            643

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=9.7e-24  Score=214.09  Aligned_cols=257  Identities=18%  Similarity=0.343  Sum_probs=210.8

Q ss_pred             EEEEeCCCeEEEEECCC------------CceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeecc
Q 047260          522 LASSGHDRKVVLWNMDT------------LQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYT  589 (784)
Q Consensus       522 Lasgs~Dg~I~IWd~~t------------~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~  589 (784)
                      |++|+....|.-+++.-            ...+..+..|.+.|++++.+  +.++|+|+.|.+|+|||+.... ....+.
T Consensus         4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~-qlg~ll   80 (362)
T KOG0294|consen    4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRK-QLGILL   80 (362)
T ss_pred             EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchh-hhccee
Confidence            56677666666665531            23356677899999999994  8999999999999999999865 566677


Q ss_pred             CCCCCeEEEEEcCCCC-cEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEEEECCCcEEEEECCCCe
Q 047260          590 GHSSPIMSLDFHPKKT-DLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLAAASDKVVSIFDIETDR  665 (784)
Q Consensus       590 ~h~~~V~sl~~sp~~~-~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~  665 (784)
                      .|.+.|+++.|.+.-. ..|++|+.||.|.+|+.....++..++   +.|+.++++|.++..++.+.|+.+++||+-.++
T Consensus        81 ~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr  160 (362)
T KOG0294|consen   81 SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGR  160 (362)
T ss_pred             ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCc
Confidence            8999999999988642 357789999999999999887766554   679999999999999999999999999999887


Q ss_pred             EEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECC
Q 047260          666 QTHSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMA  745 (784)
Q Consensus       666 ~i~~l~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~  745 (784)
                      .-..+.- ...-+.|.|+|.|.+++.+..+.|-||.+.+.....++... ..+.++.|. ++..+++|+.++.|.+||.+
T Consensus       161 ~a~v~~L-~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~-~r~l~~~~l-~~~~L~vG~d~~~i~~~D~d  237 (362)
T KOG0294|consen  161 VAFVLNL-KNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENP-KRILCATFL-DGSELLVGGDNEWISLKDTD  237 (362)
T ss_pred             cceeecc-CCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhcc-ccceeeeec-CCceEEEecCCceEEEeccC
Confidence            6655542 22334499999999999999999999999988776666544 456666665 45679999999999999999


Q ss_pred             CCceE-EecccCCceEEEEEe--CCCCEEEEEECCCcEEEeC
Q 047260          746 ENKSM-TIAAHENIISALAQS--PVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       746 ~~~~~-~~~~h~~~V~slafs--pdg~~LaSgs~DG~V~IWd  784 (784)
                      +..+. .+.+|..+|.++.+-  |++.+|+|+|.||.|+|||
T Consensus       238 s~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd  279 (362)
T KOG0294|consen  238 SDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWD  279 (362)
T ss_pred             CCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEE
Confidence            87776 677999999999854  5678999999999999997

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.93  E-value=1.1e-22  Score=217.05  Aligned_cols=262  Identities=13%  Similarity=0.119  Sum_probs=206.1

Q ss_pred             CCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEE-EEEeCCCeEEEEcCCCCcceeeeccCCCCCeEE
Q 047260          519 GKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQL-ATASVDKSVRLWDAANPNFCSQAYTGHSSPIMS  597 (784)
Q Consensus       519 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~L-atgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~s  597 (784)
                      ++.+++++.|+.|++||+.+++.+..+..+. .+.+++|+|+++.+ ++++.++.|++||+.+++ ....+..+. .+..
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~-~~~~~~~~~-~~~~   77 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGE-VIGTLPSGP-DPEL   77 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCc-EEEeccCCC-CccE
Confidence            3578899999999999999999888887554 46789999999876 566788999999999866 333344333 3567


Q ss_pred             EEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec--CCeeEEEEecCCCEEEEEECCC-cEEEEECCCCeEEEEEeCCC
Q 047260          598 LDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK--GGTAQVRFQPRIGQLLAAASDK-VVSIFDIETDRQTHSLQGHA  674 (784)
Q Consensus       598 l~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~--~~v~~v~fsp~~~~Ll~~s~Dg-~I~IwDl~t~~~i~~l~~h~  674 (784)
                      ++|+|++..+++++..++.|++||+.+...+..+.  ..+..++|+|++..++++..++ .+.+||.++++.+..+.. .
T Consensus        78 ~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~  156 (300)
T TIGR03866        78 FALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-D  156 (300)
T ss_pred             EEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-C
Confidence            89999998777777789999999999877766554  3467899999999999888764 577889998877665542 3


Q ss_pred             CCEEEEEEcCCCCEEEEEe--CCeEEEEeCCCCceEEEeccCC-------CceEEEEEecCCCEEEEE-ECCCeEEEEEC
Q 047260          675 ELVNYICWDTNGDYLASVS--QNLVKVWSMASGECIQELSSNG-------NQFHSCVFHPSYSTLLVV-GGISSLELWNM  744 (784)
Q Consensus       675 ~~V~sl~~spdg~~Lasgs--dd~I~IwDl~t~~~i~~l~~~~-------~~I~sl~fspdg~~L~s~-s~dg~I~Iwdl  744 (784)
                      ..+.+++|++++.+|++++  ++.|++||+.+++++..+..+.       .....++|+|++++++++ +.++.|.+||+
T Consensus       157 ~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~  236 (300)
T TIGR03866       157 QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDA  236 (300)
T ss_pred             CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEEC
Confidence            3457899999999886554  4599999999998877664321       123568899999986654 45678999999


Q ss_pred             CCCceEEecccCCceEEEEEeCCCCEEEEEE-CCCcEEEeC
Q 047260          745 AENKSMTIAAHENIISALAQSPVTGMVASAS-HDSSVKLWK  784 (784)
Q Consensus       745 ~~~~~~~~~~h~~~V~slafspdg~~LaSgs-~DG~V~IWd  784 (784)
                      .+++......+...+.+++|+|++++|++++ .+|.|+|||
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d  277 (300)
T TIGR03866       237 KTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVID  277 (300)
T ss_pred             CCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEE
Confidence            9888775545666899999999999998864 689999997

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=3.4e-24  Score=241.92  Aligned_cols=240  Identities=17%  Similarity=0.311  Sum_probs=195.9

Q ss_pred             eeecC-CCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCC--------------------------------Cc------
Q 047260          542 ESTPE-DHKSVVTDVRFRPNSSQLATASVDKSVRLWDAAN--------------------------------PN------  582 (784)
Q Consensus       542 ~~~l~-~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~--------------------------------~~------  582 (784)
                      ...+. .|.+.|+++.|++||+|||+|+.||.|+||.+..                                ..      
T Consensus       259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~  338 (712)
T KOG0283|consen  259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS  338 (712)
T ss_pred             eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence            34445 8999999999999999999999999999998754                                00      


Q ss_pred             ---------------------ceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEee--cCCeeEEE
Q 047260          583 ---------------------FCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHIT--KGGTAQVR  639 (784)
Q Consensus       583 ---------------------~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~--~~~v~~v~  639 (784)
                                           .+...+.||.+.|.+|.|+.++  +|++++.|.+|++|++....|+..+  ..-|+||+
T Consensus       339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVa  416 (712)
T KOG0283|consen  339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN--FLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVA  416 (712)
T ss_pred             cccccCCccccCCCccccccccchhhhhccchhheecccccCC--eeEeccccccEEeecCCCcceeeEEecCCeeEEEE
Confidence                                 0123467899999999999764  8999999999999999988887665  47899999


Q ss_pred             Eec-CCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEeCCCCceEEEecc----
Q 047260          640 FQP-RIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVS-QNLVKVWSMASGECIQELSS----  713 (784)
Q Consensus       640 fsp-~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgs-dd~I~IwDl~t~~~i~~l~~----  713 (784)
                      |+| |.+++++|+-|+.|+||++...+.+.-.. -..-|+++||.|||++.++|+ .|.+++|+....+....+..    
T Consensus       417 FnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~  495 (712)
T KOG0283|consen  417 FNPVDDRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHN  495 (712)
T ss_pred             ecccCCCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeecc
Confidence            999 45788899999999999998777665444 458899999999999999998 66999999988776554421    


Q ss_pred             ----CCCceEEEEEecCCC-EEEEEECCCeEEEEECCCCceE-EecccC--CceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          714 ----NGNQFHSCVFHPSYS-TLLVVGGISSLELWNMAENKSM-TIAAHE--NIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       714 ----~~~~I~sl~fspdg~-~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~--~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                          ....|+.+.|.|... .+++.+.|..|+|||.++...+ .+.++.  ..=....|+.||++|+++++|..|+||+
T Consensus       496 ~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~  574 (712)
T KOG0283|consen  496 KKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWK  574 (712)
T ss_pred             CccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEe
Confidence                123799999987654 5999999999999999877766 444332  2334567889999999999999999996

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=1.9e-23  Score=211.85  Aligned_cols=266  Identities=18%  Similarity=0.238  Sum_probs=213.3

Q ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCccee
Q 047260          506 RNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCS  585 (784)
Q Consensus       506 H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~  585 (784)
                      -.+.|.++.|+|.+..|++++.||.+++||+........+ .|..++.+++|.+ ...+++|+.||.|+.+|+.++.  .
T Consensus        12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~--~   87 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGN--E   87 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccC-CceEEEeccCceEEEEEecCCc--c
Confidence            3567999999998888998999999999999987665555 6999999999996 5579999999999999999876  4


Q ss_pred             eeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCe
Q 047260          586 QAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDR  665 (784)
Q Consensus       586 ~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~  665 (784)
                      ..+..|..+|.||.+.+... .+++|+.|+.|++||.+.......+...-...+.+-.++.|++|+.+..|.+||+++..
T Consensus        88 ~~igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~  166 (323)
T KOG1036|consen   88 DQIGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLD  166 (323)
T ss_pred             eeeccCCCceEEEEeeccCC-eEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEccccc
Confidence            45667999999999997654 78899999999999999755554444333344455677899999999999999999876


Q ss_pred             EEEEEe--CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEeCCCC----ceEEEeccCC---------CceEEEEEecCCCE
Q 047260          666 QTHSLQ--GHAELVNYICWDTNGDYLASVS-QNLVKVWSMASG----ECIQELSSNG---------NQFHSCVFHPSYST  729 (784)
Q Consensus       666 ~i~~l~--~h~~~V~sl~~spdg~~Lasgs-dd~I~IwDl~t~----~~i~~l~~~~---------~~I~sl~fspdg~~  729 (784)
                      ......  .-+-.++||++-|++.=+++++ +|.|.+=.+...    +....|+.|.         .+|++++|+|-...
T Consensus       167 ~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~t  246 (323)
T KOG1036|consen  167 EPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGT  246 (323)
T ss_pred             chhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccce
Confidence            544322  2445789999999776555555 776666555444    3344555553         36899999999999


Q ss_pred             EEEEECCCeEEEEECCCCceE-EecccCCceEEEEEeCCCCEEEEEEC
Q 047260          730 LLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASH  776 (784)
Q Consensus       730 L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg~~LaSgs~  776 (784)
                      |++|+.||.|.+||+...+.+ .+...+..|..++|+.+|..||+++.
T Consensus       247 faTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  247 FATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             EEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence            999999999999999998887 55566788999999999999999874

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.92  E-value=1.7e-23  Score=221.51  Aligned_cols=277  Identities=17%  Similarity=0.282  Sum_probs=225.9

Q ss_pred             EeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceee----e-------------c-CCCCCCeEEEEEccCC
Q 047260          500 VGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTES----T-------------P-EDHKSVVTDVRFRPNS  561 (784)
Q Consensus       500 i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~----~-------------l-~~h~~~It~i~fspdg  561 (784)
                      +..+..|.-+|+||+++||.+++++++.|++|.-|++.+++...    .             - +.|...|.+++.++|+
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg  214 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG  214 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence            66778899999999999999999999999999999998776331    1             1 2688899999999999


Q ss_pred             CEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeE---EeecCCeeEE
Q 047260          562 SQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCT---HITKGGTAQV  638 (784)
Q Consensus       562 ~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~---~~~~~~v~~v  638 (784)
                      +||++|+.|..|.||+.++.+ .+..+.+|.+.|.+++|-.. ..-+++++.|..|++|+++....+   ..+...|..+
T Consensus       215 kylatgg~d~~v~Iw~~~t~e-hv~~~~ghr~~V~~L~fr~g-t~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~I  292 (479)
T KOG0299|consen  215 KYLATGGRDRHVQIWDCDTLE-HVKVFKGHRGAVSSLAFRKG-TSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGI  292 (479)
T ss_pred             cEEEecCCCceEEEecCcccc-hhhcccccccceeeeeeecC-ccceeeeecCCceEEEehhHhHHHHHHhCCccceeee
Confidence            999999999999999999977 67778999999999999754 446778888999999999875444   4455677888


Q ss_pred             EEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeC-CeEEEEeCCCCceEEEecc-C--
Q 047260          639 RFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQ-NLVKVWSMASGECIQELSS-N--  714 (784)
Q Consensus       639 ~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsd-d~I~IwDl~t~~~i~~l~~-~--  714 (784)
                      .....++.+-+++.|+++++|++.. +....+.++.+.+-|++|-.+.. +++|++ +.|.+|++...+++++... |  
T Consensus       293 daL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In~~H-fvsGSdnG~IaLWs~~KKkplf~~~~AHgv  370 (479)
T KOG0299|consen  293 DALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFINDEH-FVSGSDNGSIALWSLLKKKPLFTSRLAHGV  370 (479)
T ss_pred             chhcccceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEecccc-eeeccCCceEEEeeecccCceeEeeccccc
Confidence            8777777777788999999999943 34445678999999999976655 555665 5999999999988877642 1  


Q ss_pred             ---------CCceEEEEEecCCCEEEEEECCCeEEEEECCCCc----eEEecccCCceEEEEEeCCCCEEEEE-ECCCcE
Q 047260          715 ---------GNQFHSCVFHPSYSTLLVVGGISSLELWNMAENK----SMTIAAHENIISALAQSPVTGMVASA-SHDSSV  780 (784)
Q Consensus       715 ---------~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~----~~~~~~h~~~V~slafspdg~~LaSg-s~DG~V  780 (784)
                               ..+|++++..|...++++|+.+|.|++|-+.++-    ++.-..-.+.|++|+|+++|+.|++| +....+
T Consensus       371 ~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGkEhRl  450 (479)
T KOG0299|consen  371 IPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIGKEHRL  450 (479)
T ss_pred             cCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEeccccccc
Confidence                     1278999999999999999999999999999883    22333577899999999999965554 444443

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.92  E-value=8.9e-24  Score=231.81  Aligned_cols=286  Identities=12%  Similarity=0.217  Sum_probs=230.4

Q ss_pred             eEEeEeecCCCceEEEEEcCC-----------CCEEEEEeCCCeEEEEECCCCceeeec---------------------
Q 047260          498 CEVGCIRSRNSKVTCCHFSSD-----------GKLLASSGHDRKVVLWNMDTLQTESTP---------------------  545 (784)
Q Consensus       498 ~~i~~l~~H~~~V~~l~fspd-----------g~~Lasgs~Dg~I~IWd~~t~~~~~~l---------------------  545 (784)
                      .+...+--|...|+.+.--|.           ...++|++.|++|++||++.+..-..+                     
T Consensus       360 gk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~  439 (1080)
T KOG1408|consen  360 GKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQI  439 (1080)
T ss_pred             cceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhh
Confidence            344445568888888776551           135889999999999999752111100                     


Q ss_pred             ----------------CCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCC--CCcE
Q 047260          546 ----------------EDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPK--KTDL  607 (784)
Q Consensus       546 ----------------~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~--~~~l  607 (784)
                                      -.....|.+++.+|++.+|++|..-|+++||++.+.+ .......|..+|.|+.|+..  +..+
T Consensus       440 ~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~-~~~~~eAHesEilcLeyS~p~~~~kL  518 (1080)
T KOG1408|consen  440 MHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELE-YTCFMEAHESEILCLEYSFPVLTNKL  518 (1080)
T ss_pred             hhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhh-hhhheecccceeEEEeecCchhhhHh
Confidence                            0234579999999999999999999999999998766 45567789999999999753  4569


Q ss_pred             EEEEeCCCeEEEEeCCC-C---eeEEeecCCeeEEEEecCC--CEEEEEECCCcEEEEECCCCeEEEEEeC-----CCCC
Q 047260          608 FCFCDNDNEIQYWSINP-F---LCTHITKGGTAQVRFQPRI--GQLLAAASDKVVSIFDIETDRQTHSLQG-----HAEL  676 (784)
Q Consensus       608 l~sgs~dg~I~iwDl~~-~---~~~~~~~~~v~~v~fsp~~--~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~-----h~~~  676 (784)
                      |++++.|..|.|||... .   ..+..+...|+++.|...|  ..+++++.|+.|.+--.........|..     ....
T Consensus       519 LASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktT  598 (1080)
T KOG1408|consen  519 LASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTT  598 (1080)
T ss_pred             hhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccce
Confidence            99999999999999964 2   3344556789999998877  6789999998886544432222222222     2457


Q ss_pred             EEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEecc---CCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE-E
Q 047260          677 VNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSS---NGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM-T  751 (784)
Q Consensus       677 V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~---~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~-~  751 (784)
                      ++.++..|..+++++++.| .|+|||+.+++.++.|++   |++....+...|.|-||++...|.+|.++|..+++++ .
T Consensus       599 lYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~  678 (1080)
T KOG1408|consen  599 LYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQ  678 (1080)
T ss_pred             EEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhh
Confidence            8899999999999999966 999999999999999985   5567889999999999999999999999999999998 8


Q ss_pred             ecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          752 IAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       752 ~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      ..+|...|+.+.|.+|-+.|++.+.||+|.||+
T Consensus       679 m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~  711 (1080)
T KOG1408|consen  679 MTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWK  711 (1080)
T ss_pred             hcCcchheeeeeecccchhheeecCCceEEEEE
Confidence            889999999999999999999999999999995

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.92  E-value=1.7e-23  Score=211.19  Aligned_cols=267  Identities=18%  Similarity=0.237  Sum_probs=213.6

Q ss_pred             CcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCC
Q 047260          439 SLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSD  518 (784)
Q Consensus       439 ~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspd  518 (784)
                      ..++++.|++..+.++.+||||++|++|.+..++  .. .                     -+....|.++|.|++|+.|
T Consensus        28 DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g--~~-~---------------------~ka~~~~~~PvL~v~Wsdd   83 (347)
T KOG0647|consen   28 DSISALAFSPQADNLLAAGSWDGTVRIWEVQNSG--QL-V---------------------PKAQQSHDGPVLDVCWSDD   83 (347)
T ss_pred             cchheeEeccccCceEEecccCCceEEEEEecCC--cc-c---------------------chhhhccCCCeEEEEEccC
Confidence            3456777888888999999999999999987653  11 0                     0234569999999999999


Q ss_pred             CCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCC--EEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeE
Q 047260          519 GKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSS--QLATASVDKSVRLWDAANPNFCSQAYTGHSSPIM  596 (784)
Q Consensus       519 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~--~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~  596 (784)
                      |..+++|+.|+.+++||+.++. +..+..|.++|.++.|-+...  .|+|||.|++|+.||++....+ ..+ ...+.|+
T Consensus        84 gskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv-~t~-~LPeRvY  160 (347)
T KOG0647|consen   84 GSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPV-ATL-QLPERVY  160 (347)
T ss_pred             CceEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCee-eee-eccceee
Confidence            9999999999999999999985 456668999999999998655  8999999999999999986633 322 2356777


Q ss_pred             EEEEcCCCCcEEEEEeCCCeEEEEeCCCCe-eE----EeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCC--eEEEE
Q 047260          597 SLDFHPKKTDLFCFCDNDNEIQYWSINPFL-CT----HITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETD--RQTHS  669 (784)
Q Consensus       597 sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~-~~----~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~--~~i~~  669 (784)
                      +++.-.   .+++++..+..|.+|+++... ..    ..++-.+.+|+...+....+.|+.+|.+.|..+..+  +.-..
T Consensus       161 a~Dv~~---pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFt  237 (347)
T KOG0647|consen  161 AADVLY---PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFT  237 (347)
T ss_pred             ehhccC---ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCcee
Confidence            776643   277888889999999996432 22    224456789999888888899999999999998876  44455


Q ss_pred             EeCCCC---------CEEEEEEcCCCCEEEE-EeCCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEEC
Q 047260          670 LQGHAE---------LVNYICWDTNGDYLAS-VSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGG  735 (784)
Q Consensus       670 l~~h~~---------~V~sl~~spdg~~Las-gsdd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~  735 (784)
                      |+.|..         .|++|+|+|....|++ |+||++.+||-.....+++...+..+|+++.|+.+|.+++.+..
T Consensus       238 FkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~g  313 (347)
T KOG0647|consen  238 FKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALG  313 (347)
T ss_pred             EEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEee
Confidence            666652         5788999996655555 55779999999988889999999999999999999998877654

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=1.6e-22  Score=196.13  Aligned_cols=290  Identities=17%  Similarity=0.279  Sum_probs=228.9

Q ss_pred             cccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCC
Q 047260          440 LASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDG  519 (784)
Q Consensus       440 ~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg  519 (784)
                      .+.++.|.+.. .+.++||-..+.++....+-.+.|..-.           ..+-.+....+.-+.|.+.|.|.+|+|+|
T Consensus        34 airav~fhp~g-~lyavgsnskt~ric~yp~l~~~r~~he-----------a~~~pp~v~~kr~khhkgsiyc~~ws~~g  101 (350)
T KOG0641|consen   34 AIRAVAFHPAG-GLYAVGSNSKTFRICAYPALIDLRHAHE-----------AAKQPPSVLCKRNKHHKGSIYCTAWSPCG  101 (350)
T ss_pred             heeeEEecCCC-ceEEeccCCceEEEEccccccCcccccc-----------cccCCCeEEeeeccccCccEEEEEecCcc
Confidence            34556665554 4556899888888886655444333211           11122233445567899999999999999


Q ss_pred             CEEEEEeCCCeEEEEECCCCc-----eeeecCCCCCCeEEEEEcc----CCCEEEEEeC-CCeEEEEcCCCCcceeeecc
Q 047260          520 KLLASSGHDRKVVLWNMDTLQ-----TESTPEDHKSVVTDVRFRP----NSSQLATASV-DKSVRLWDAANPNFCSQAYT  589 (784)
Q Consensus       520 ~~Lasgs~Dg~I~IWd~~t~~-----~~~~l~~h~~~It~i~fsp----dg~~Latgs~-Dg~I~IWdl~~~~~~~~~~~  589 (784)
                      .+||+|+.|.+|++..++...     ....+.-|.+.|.+++|-.    .+.+|++++. |..|.+-|...+. ....+.
T Consensus       102 eliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~-~~~a~s  180 (350)
T KOG0641|consen  102 ELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ-GFHALS  180 (350)
T ss_pred             CeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC-cceeec
Confidence            999999999999998765322     1234567999999999975    3456776653 6677777877766 667788


Q ss_pred             CCCCCeEEEE-EcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec----------CCeeEEEEecCCCEEEEEECCCcEEE
Q 047260          590 GHSSPIMSLD-FHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK----------GGTAQVRFQPRIGQLLAAASDKVVSI  658 (784)
Q Consensus       590 ~h~~~V~sl~-~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~----------~~v~~v~fsp~~~~Ll~~s~Dg~I~I  658 (784)
                      +|.+.|.++- |+   ..+|++|+.|.+|++||++-..++....          ..+..+++.|.|+.|+++-.|....+
T Consensus       181 ghtghilalyswn---~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~l  257 (350)
T KOG0641|consen  181 GHTGHILALYSWN---GAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCML  257 (350)
T ss_pred             CCcccEEEEEEec---CcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEE
Confidence            9999998873 43   4599999999999999999877776543          45788999999999999999999999


Q ss_pred             EECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCC----ceEEEeccCCCceEEEEEecCCCEEEEE
Q 047260          659 FDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASG----ECIQELSSNGNQFHSCVFHPSYSTLLVV  733 (784)
Q Consensus       659 wDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~----~~i~~l~~~~~~I~sl~fspdg~~L~s~  733 (784)
                      ||++.++.+..+..|...|.|+.|+|...|+.+++-+ .|++-|+...    -.+..+..|...+..|.|+|..-.+++.
T Consensus       258 ydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfiss  337 (350)
T KOG0641|consen  258 YDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISS  337 (350)
T ss_pred             EEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeec
Confidence            9999999999999999999999999999999999966 9999998643    2445566788999999999999899999


Q ss_pred             ECCCeEEEEECC
Q 047260          734 GGISSLELWNMA  745 (784)
Q Consensus       734 s~dg~I~Iwdl~  745 (784)
                      +.|.++.+|-+.
T Consensus       338 sadkt~tlwa~~  349 (350)
T KOG0641|consen  338 SADKTATLWALN  349 (350)
T ss_pred             cCcceEEEeccC
Confidence            999999999764

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.92  E-value=3e-23  Score=220.45  Aligned_cols=276  Identities=16%  Similarity=0.244  Sum_probs=230.7

Q ss_pred             cCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCC---CceeeecC--CCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCC
Q 047260          505 SRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDT---LQTESTPE--DHKSVVTDVRFRPNSSQLATASVDKSVRLWDAA  579 (784)
Q Consensus       505 ~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t---~~~~~~l~--~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~  579 (784)
                      .|..-|.++.+|...++++||+ .|.|+|||+..   ...+..+.  .....|.++.+.|||+.|++|++-.++.|||+.
T Consensus       417 ~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA  495 (705)
T KOG0639|consen  417 AHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA  495 (705)
T ss_pred             ccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence            4888899999999999999988 56799999963   23333333  245779999999999999999999999999998


Q ss_pred             CCccee-eeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEEEECCCc
Q 047260          580 NPNFCS-QAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLAAASDKV  655 (784)
Q Consensus       580 ~~~~~~-~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~~s~Dg~  655 (784)
                      .....+ ..+....-.+.+++.+||.+ +.++|..||.|.|||+.....++.+.   ..+.||.++++|..|.+|+-|++
T Consensus       496 apTprikaeltssapaCyALa~spDak-vcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDnt  574 (705)
T KOG0639|consen  496 APTPRIKAELTSSAPACYALAISPDAK-VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNT  574 (705)
T ss_pred             CCCcchhhhcCCcchhhhhhhcCCccc-eeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccc
Confidence            765322 22333334578899999987 66677789999999999988877766   57899999999999999999999


Q ss_pred             EEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEE
Q 047260          656 VSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVG  734 (784)
Q Consensus       656 I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s  734 (784)
                      |+.||+++++.+.... ....|.++..+|.+.+|++|-++ .|.|..... .....+..|++.|.++.|.+.|+++++.+
T Consensus       575 vRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~sk-p~kyqlhlheScVLSlKFa~cGkwfvStG  652 (705)
T KOG0639|consen  575 VRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSK-PEKYQLHLHESCVLSLKFAYCGKWFVSTG  652 (705)
T ss_pred             eeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCC-ccceeecccccEEEEEEecccCceeeecC
Confidence            9999999987665433 56789999999999999999877 787777543 34456677889999999999999999999


Q ss_pred             CCCeEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          735 GISSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       735 ~dg~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      .|+-+..|..--+..+.-....+.|.++.++.|+++|+||+.|....||.
T Consensus       653 kDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVYe  702 (705)
T KOG0639|consen  653 KDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVYE  702 (705)
T ss_pred             chhhhhhccCccccceeeccccCcceeeeeccCceEEEecCCCcceEEEE
Confidence            99999999999888887777888999999999999999999998887763

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=4e-23  Score=209.40  Aligned_cols=281  Identities=19%  Similarity=0.273  Sum_probs=208.7

Q ss_pred             EEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcee--eecC--CCCCCeEEEEEccCCCEEEEEe-CCCeE
Q 047260          499 EVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTE--STPE--DHKSVVTDVRFRPNSSQLATAS-VDKSV  573 (784)
Q Consensus       499 ~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~--~~l~--~h~~~It~i~fspdg~~Latgs-~Dg~I  573 (784)
                      .+..|++|.+.|+|++|+.||++|||++.|+.|+||+++.....  +.++  -.-+..+.+.|.||-+-++... ...++
T Consensus        78 ~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l  157 (420)
T KOG2096|consen   78 NVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKL  157 (420)
T ss_pred             hhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEE
Confidence            45678999999999999999999999999999999999864321  1111  1223568899999887665554 45579


Q ss_pred             EEEcCCCCc---cee--------eeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEE
Q 047260          574 RLWDAANPN---FCS--------QAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVR  639 (784)
Q Consensus       574 ~IWdl~~~~---~~~--------~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~  639 (784)
                      ++|.+...+   ...        ..-..|.-.|..+-... +..++++++.|..|.+|+++ ++.+....   ...+..+
T Consensus       158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aa  235 (420)
T KOG2096|consen  158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG-NAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAA  235 (420)
T ss_pred             EEEEeeecccCCCCcccccccccccchhcccceEEEeecC-CceEEEEecCCCcEEEEecC-Cceeeeecccccccccee
Confidence            999875322   111        11123455565555544 44588999999999999999 55554443   3456678


Q ss_pred             EecCCCEEEEEECCCcEEEEECC---CC-----eEEEEEeCCCCCEEEEEEcCCCCEEEEEeC-CeEEEEeCCC------
Q 047260          640 FQPRIGQLLAAASDKVVSIFDIE---TD-----RQTHSLQGHAELVNYICWDTNGDYLASVSQ-NLVKVWSMAS------  704 (784)
Q Consensus       640 fsp~~~~Ll~~s~Dg~I~IwDl~---t~-----~~i~~l~~h~~~V~sl~~spdg~~Lasgsd-d~I~IwDl~t------  704 (784)
                      ++|+|+++++++..-.|++|.+-   .|     ..+..+++|...|..++|+++.+.+++.+. ++++|||+.-      
T Consensus       236 vSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~q  315 (420)
T KOG2096|consen  236 VSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQ  315 (420)
T ss_pred             eCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCC
Confidence            99999999999999999999863   22     345678899999999999999999999995 4999999852      


Q ss_pred             -CceEEEec----cCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE--EecccCCceEEEEEeCCCCEEEEEECC
Q 047260          705 -GECIQELS----SNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM--TIAAHENIISALAQSPVTGMVASASHD  777 (784)
Q Consensus       705 -~~~i~~l~----~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~--~~~~h~~~V~slafspdg~~LaSgs~D  777 (784)
                       .+.+++..    ..++.-..+..+|.+..|+++.. ..|++|..++++..  ....|...|.+|+|+++|+++++++ |
T Consensus       316 Dpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g-s~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-d  393 (420)
T KOG2096|consen  316 DPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG-SDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-D  393 (420)
T ss_pred             CchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC-CceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-c
Confidence             22333331    22344458999999986666544 47999999998877  3347999999999999999999987 5


Q ss_pred             CcEEEe
Q 047260          778 SSVKLW  783 (784)
Q Consensus       778 G~V~IW  783 (784)
                      ..|+|+
T Consensus       394 r~vrv~  399 (420)
T KOG2096|consen  394 RYVRVI  399 (420)
T ss_pred             eeeeee
Confidence            667664

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=5.7e-24  Score=232.55  Aligned_cols=317  Identities=16%  Similarity=0.182  Sum_probs=253.9

Q ss_pred             ccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCCCEEEEEe
Q 047260          447 LEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSG  526 (784)
Q Consensus       447 ~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs  526 (784)
                      .....+++.+|+.|+.++.|........                    +.-..+..+..|.+.|+++....+++.|++++
T Consensus        33 da~~~ryLfTgGRDg~i~~W~~~~d~~~--------------------~s~~~~asme~HsDWVNDiiL~~~~~tlIS~S   92 (735)
T KOG0308|consen   33 DAPNGRYLFTGGRDGIIRLWSVTQDSNE--------------------PSTPYIASMEHHSDWVNDIILCGNGKTLISAS   92 (735)
T ss_pred             cCCCCceEEecCCCceEEEeccccccCC--------------------cccchhhhhhhhHhHHhhHHhhcCCCceEEec
Confidence            3445666778999999999976443311                    01114667888999999999999999999999


Q ss_pred             CCCeEEEEECCCC--ceeeecCCCCCCeEEEEE-ccCCCEEEEEeCCCeEEEEcCCCCcc---------eeeecc-CCCC
Q 047260          527 HDRKVVLWNMDTL--QTESTPEDHKSVVTDVRF-RPNSSQLATASVDKSVRLWDAANPNF---------CSQAYT-GHSS  593 (784)
Q Consensus       527 ~Dg~I~IWd~~t~--~~~~~l~~h~~~It~i~f-spdg~~Latgs~Dg~I~IWdl~~~~~---------~~~~~~-~h~~  593 (784)
                      .|-+|++|+....  -+..++..|.+.|.|+++ .++...+|+|+.|+.|.|||++++..         ....+. ++..
T Consensus        93 sDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~  172 (735)
T KOG0308|consen   93 SDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKD  172 (735)
T ss_pred             CCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCcc
Confidence            9999999999876  577888999999999999 77889999999999999999996521         112223 7889


Q ss_pred             CeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEee---cCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEE
Q 047260          594 PIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHIT---KGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSL  670 (784)
Q Consensus       594 ~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~---~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l  670 (784)
                      .|++++-++.+ .+|++|+..+.|++||.++.+.+..+   ...|.++..+++|..++++++||+|++||+...+++.++
T Consensus       173 siYSLA~N~t~-t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~  251 (735)
T KOG0308|consen  173 SIYSLAMNQTG-TIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATY  251 (735)
T ss_pred             ceeeeecCCcc-eEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeE
Confidence            99999999988 48999999999999999987766554   466888999999999999999999999999999999999


Q ss_pred             eCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCce
Q 047260          671 QGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKS  749 (784)
Q Consensus       671 ~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~  749 (784)
                      ..|...|.++..+|+-..+++|+.+ .|..=|+++......+.....+|..+..+....-+.+++.|+.|+-|...-...
T Consensus       252 ~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~  331 (735)
T KOG0308|consen  252 IVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIA  331 (735)
T ss_pred             EeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCccccc
Confidence            9999999999999999999999855 999999998644444445567788888886666678899999999996543221


Q ss_pred             EE--------e-----------------cccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          750 MT--------I-----------------AAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       750 ~~--------~-----------------~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      +.        .                 ......|...+.-.|.+.++|-..+|.|.+||
T Consensus       332 l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwD  391 (735)
T KOG0308|consen  332 LSVSGDLDFFSTDSNNHSCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWD  391 (735)
T ss_pred             cccCCCCCcccccCCCccccccCCCceeccCchhhhhhhhhcCcceEeeecCCCCEEEEE
Confidence            10        0                 00111233334445778999999999999997

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=4.3e-22  Score=203.05  Aligned_cols=276  Identities=19%  Similarity=0.328  Sum_probs=221.3

Q ss_pred             CCcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcC
Q 047260          438 GSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSS  517 (784)
Q Consensus       438 ~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fsp  517 (784)
                      ...+.++.|.+++..+++ ++.|+.+++|+..++.                          .++++..+.-.|..++|..
T Consensus        14 ~~~i~sl~fs~~G~~lit-ss~dDsl~LYd~~~g~--------------------------~~~ti~skkyG~~~~~Fth   66 (311)
T KOG1446|consen   14 NGKINSLDFSDDGLLLIT-SSEDDSLRLYDSLSGK--------------------------QVKTINSKKYGVDLACFTH   66 (311)
T ss_pred             CCceeEEEecCCCCEEEE-ecCCCeEEEEEcCCCc--------------------------eeeEeecccccccEEEEec
Confidence            345677888777777775 8889999999875554                          3455566777788888887


Q ss_pred             CCCEEEEEeC--CCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCe
Q 047260          518 DGKLLASSGH--DRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPI  595 (784)
Q Consensus       518 dg~~Lasgs~--Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V  595 (784)
                      ....++.++.  |.+|+..++.+.+.++.+.+|...|+.|+.+|-+..+++++.|++|++||++..+ +...+..  ..-
T Consensus        67 ~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~-cqg~l~~--~~~  143 (311)
T KOG1446|consen   67 HSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKK-CQGLLNL--SGR  143 (311)
T ss_pred             CCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCC-CceEEec--CCC
Confidence            7666666665  8899999999999999999999999999999988999999999999999999766 3333322  223


Q ss_pred             EEEEEcCCCCcEEEEEeCCCeEEEEeCCCC-----eeEEee---cCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEE
Q 047260          596 MSLDFHPKKTDLFCFCDNDNEIQYWSINPF-----LCTHIT---KGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQT  667 (784)
Q Consensus       596 ~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~-----~~~~~~---~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i  667 (784)
                      ..++|.|+|- +++++.....|++||++..     ......   ....+.+.|+|+|+.++.++..+.+++.|.-+|...
T Consensus       144 pi~AfDp~GL-ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~  222 (311)
T KOG1446|consen  144 PIAAFDPEGL-IFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVK  222 (311)
T ss_pred             cceeECCCCc-EEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEe
Confidence            4578999986 6666666669999999853     222222   356788999999999999999999999999999998


Q ss_pred             EEEeCCCCCE---EEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEecc-CCCceEEEEEecCCCEEEEEECCCeEEEE
Q 047260          668 HSLQGHAELV---NYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSS-NGNQFHSCVFHPSYSTLLVVGGISSLELW  742 (784)
Q Consensus       668 ~~l~~h~~~V---~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~-~~~~I~sl~fspdg~~L~s~s~dg~I~Iw  742 (784)
                      .++..+...-   ...+|.||++++++|++| +|.+|++++++.+..+.+ +..++.++.|+|....++++  +..+.+|
T Consensus       223 ~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw  300 (311)
T KOG1446|consen  223 STFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFW  300 (311)
T ss_pred             eeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeec--CceEEEE
Confidence            8888765432   577899999999999975 999999999999999988 58889999999986555544  5578888


Q ss_pred             ECCC
Q 047260          743 NMAE  746 (784)
Q Consensus       743 dl~~  746 (784)
                      =...
T Consensus       301 ~p~~  304 (311)
T KOG1446|consen  301 LPDE  304 (311)
T ss_pred             eccc
Confidence            6543

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.92  E-value=4.3e-23  Score=216.68  Aligned_cols=265  Identities=18%  Similarity=0.239  Sum_probs=225.8

Q ss_pred             eEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEE
Q 047260          453 FADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVV  532 (784)
Q Consensus       453 ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~  532 (784)
                      ++.+|..|.++.+++.....                          .+..++||...|+.+.|+++...+++++.|..|+
T Consensus       233 ~ilTGG~d~~av~~d~~s~q--------------------------~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~  286 (506)
T KOG0289|consen  233 KILTGGEDKTAVLFDKPSNQ--------------------------ILATLKGHTKKITSVKFHKDLDTVITASADEIIR  286 (506)
T ss_pred             cceecCCCCceEEEecchhh--------------------------hhhhccCcceEEEEEEeccchhheeecCCcceEE
Confidence            34468888888888653322                          3556889999999999999999999999999999


Q ss_pred             EEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeecc-CCCCCeEEEEEcCCCCcEEEEE
Q 047260          533 LWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYT-GHSSPIMSLDFHPKKTDLFCFC  611 (784)
Q Consensus       533 IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~-~h~~~V~sl~~sp~~~~ll~sg  611 (784)
                      ||.............|.++|+.+..+|.|.||++++.|++..+.|++++........ ...-.+++.+|||||. +|.+|
T Consensus       287 vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgL-ifgtg  365 (506)
T KOG0289|consen  287 VWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGL-IFGTG  365 (506)
T ss_pred             eeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCce-EEecc
Confidence            999998888888889999999999999999999999999999999999875443332 2334689999999986 89999


Q ss_pred             eCCCeEEEEeCCCCeeEEee---cCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeC-CCCCEEEEEEcCCCC
Q 047260          612 DNDNEIQYWSINPFLCTHIT---KGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQG-HAELVNYICWDTNGD  687 (784)
Q Consensus       612 s~dg~I~iwDl~~~~~~~~~---~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~-h~~~V~sl~~spdg~  687 (784)
                      ..|+.|+|||+.....+..+   .++|..+.|+.+|-+|++++.|+.|++||+|..+...++.- ....|.+++|+..|.
T Consensus       366 t~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt  445 (506)
T KOG0289|consen  366 TPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGT  445 (506)
T ss_pred             CCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCC
Confidence            99999999999977665554   47899999999999999999999999999999887777764 334799999999999


Q ss_pred             EEEEEeCC-eEEEEeCC--CCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEEC
Q 047260          688 YLASVSQN-LVKVWSMA--SGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNM  744 (784)
Q Consensus       688 ~Lasgsdd-~I~IwDl~--t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl  744 (784)
                      +|+.++.+ .|++++-.  ...++..+..|.+..+++.|.....++++++.|..++++.+
T Consensus       446 ~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  446 YLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             eEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence            99999766 77777643  56788888888888999999999999999999999888764

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.92  E-value=1.3e-21  Score=208.81  Aligned_cols=284  Identities=14%  Similarity=0.111  Sum_probs=208.4

Q ss_pred             ceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCCCEE-EEEeCCCe
Q 047260          452 RFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLL-ASSGHDRK  530 (784)
Q Consensus       452 ~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~~L-asgs~Dg~  530 (784)
                      +++.+++.|+.+.+|+.....                          .+..+..|. .+.+++|+|+++.+ ++++.++.
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~--------------------------~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~   54 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLE--------------------------VTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDT   54 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCc--------------------------eEEEEECCC-CCCceEECCCCCEEEEEECCCCe
Confidence            345567788999999753221                          233344443 46789999999976 56678899


Q ss_pred             EEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEE-eCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEE
Q 047260          531 VVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATA-SVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFC  609 (784)
Q Consensus       531 I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latg-s~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~  609 (784)
                      |++||..+++.+..+..+.. +..++|+|+++.++++ +.|+.|++||+.+.. ....+. +...+.+++|+|++..+++
T Consensus        55 v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~-~~~~~~-~~~~~~~~~~~~dg~~l~~  131 (300)
T TIGR03866        55 IQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRK-VLAEIP-VGVEPEGMAVSPDGKIVVN  131 (300)
T ss_pred             EEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCe-EEeEee-CCCCcceEEECCCCCEEEE
Confidence            99999999888877765544 5678999999877655 568999999998755 333333 2345688999999985544


Q ss_pred             EEeCCCeEEEEeCCCCeeEEee--cCCeeEEEEecCCCEEEEEE-CCCcEEEEECCCCeEEEEEeCCC-----C--CEEE
Q 047260          610 FCDNDNEIQYWSINPFLCTHIT--KGGTAQVRFQPRIGQLLAAA-SDKVVSIFDIETDRQTHSLQGHA-----E--LVNY  679 (784)
Q Consensus       610 sgs~dg~I~iwDl~~~~~~~~~--~~~v~~v~fsp~~~~Ll~~s-~Dg~I~IwDl~t~~~i~~l~~h~-----~--~V~s  679 (784)
                      +...+..+.+||.++.......  ......+.|++++..+++++ .++.|++||+++++.+..+..+.     .  ....
T Consensus       132 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (300)
T TIGR03866       132 TSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVG  211 (300)
T ss_pred             EecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccc
Confidence            4433456788899877665432  34567789999999887665 48999999999998777664321     1  2346


Q ss_pred             EEEcCCCCEEEEEe--CCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEE-CCCeEEEEECCCCceEEecccC
Q 047260          680 ICWDTNGDYLASVS--QNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVG-GISSLELWNMAENKSMTIAAHE  756 (784)
Q Consensus       680 l~~spdg~~Lasgs--dd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s-~dg~I~Iwdl~~~~~~~~~~h~  756 (784)
                      ++|+|++++++++.  ++.|.+||+.+++.+..+. +...+.+++|+|++.+|+++. .++.|++||+.+++++......
T Consensus       212 i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~  290 (300)
T TIGR03866       212 IKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG  290 (300)
T ss_pred             eEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc
Confidence            88999999865543  4589999999988876653 345789999999999998874 5899999999999987444455


Q ss_pred             CceEEEEEeC
Q 047260          757 NIISALAQSP  766 (784)
Q Consensus       757 ~~V~slafsp  766 (784)
                      ...+.++++|
T Consensus       291 ~~~~~~~~~~  300 (300)
T TIGR03866       291 RLPWGVVVRP  300 (300)
T ss_pred             cccceeEeCC
Confidence            6668888765

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.91  E-value=1.5e-23  Score=230.02  Aligned_cols=294  Identities=19%  Similarity=0.266  Sum_probs=233.2

Q ss_pred             eEeccccCCcceeEEeecCCCCcceeccccC----------CC-CccCCCCCCcceeEEeEeecCCCceEEEEEcCCCCE
Q 047260          453 FADVGSIDENMESLLSHDGGDGRELYGTLKH----------SP-EHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKL  521 (784)
Q Consensus       453 ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~----------~~-~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~~  521 (784)
                      ...++|.|+++++|+......+..+-...-.          .. ....+...+.--+.....-+....|.|++.+|+|.+
T Consensus       394 cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqh  473 (1080)
T KOG1408|consen  394 CFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQH  473 (1080)
T ss_pred             ceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcce
Confidence            3457899999999988763332221110000          00 000011111111112223345667999999999999


Q ss_pred             EEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEcc---CCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEE
Q 047260          522 LASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRP---NSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSL  598 (784)
Q Consensus       522 Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fsp---dg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl  598 (784)
                      ||+|..-|.++||++...+....++.|...|.|+.|+.   ..++|++++.|..|+|||+...-.+..++.+|...|+++
T Consensus       474 LAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsv  553 (1080)
T KOG1408|consen  474 LASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSV  553 (1080)
T ss_pred             ecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEE
Confidence            99999999999999999999999999999999999986   457899999999999999998777888999999999999


Q ss_pred             EEcCCC-CcEEEEEeCCCeEEEEeCCC---CeeEE-----eecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEE
Q 047260          599 DFHPKK-TDLFCFCDNDNEIQYWSINP---FLCTH-----ITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHS  669 (784)
Q Consensus       599 ~~sp~~-~~ll~sgs~dg~I~iwDl~~---~~~~~-----~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~  669 (784)
                      .|.-.+ +.-.++|+.|..|.+--...   +....     .-+..+.++.+.|..+++++++.|..|+|||+.+++..+.
T Consensus       554 KFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~  633 (1080)
T KOG1408|consen  554 KFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKS  633 (1080)
T ss_pred             EEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeee
Confidence            998765 45677888888776543331   22211     1235678899999999999999999999999999999999


Q ss_pred             EeC---CCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECC
Q 047260          670 LQG---HAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMA  745 (784)
Q Consensus       670 l~~---h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~  745 (784)
                      |++   |++....+..+|.|.||++...| ++.++|+.+++|+....+|...|+.+.|.+|-++|++++.||.|.||.+.
T Consensus       634 FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp  713 (1080)
T KOG1408|consen  634 FKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLP  713 (1080)
T ss_pred             ecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECc
Confidence            986   66788889999999999987755 99999999999999999999999999999999999999999999999986


Q ss_pred             C
Q 047260          746 E  746 (784)
Q Consensus       746 ~  746 (784)
                      .
T Consensus       714 ~  714 (1080)
T KOG1408|consen  714 L  714 (1080)
T ss_pred             h
Confidence            5

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.91  E-value=2.2e-22  Score=221.65  Aligned_cols=350  Identities=19%  Similarity=0.249  Sum_probs=260.9

Q ss_pred             eeeecCCCCCCcccccccccC--CCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEE------
Q 047260          429 LMMNGSEGTGSLASASNLLED--IDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEV------  500 (784)
Q Consensus       429 ~~~~g~~~~~~~~ss~~~~~~--~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i------  500 (784)
                      .....-.|++.-+-+..|...  .+.+++++|-|..|++|...-.++...+-.    .. ......+...|...      
T Consensus       182 ~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~----e~-~~t~~~~~~~f~~l~~i~~~  256 (764)
T KOG1063|consen  182 ARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNER----ED-SLTTLSNLPVFMILEEIQYR  256 (764)
T ss_pred             eEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCcccccc----cc-ccccccCCceeeeeeeEEEE
Confidence            334444555555555555443  467888999999999998765543331111    00 00111112222222      


Q ss_pred             ----eEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--eee-----ecCCCCCCeEEEEEccCCCEEEEEeC
Q 047260          501 ----GCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQ--TES-----TPEDHKSVVTDVRFRPNSSQLATASV  569 (784)
Q Consensus       501 ----~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~--~~~-----~l~~h~~~It~i~fspdg~~Latgs~  569 (784)
                          ..+.||++.|.++.|+|++..|++++.|.++.||..++..  -+.     ...+.........|+|+++.+++-+.
T Consensus       257 is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~  336 (764)
T KOG1063|consen  257 ISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGR  336 (764)
T ss_pred             EehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecc
Confidence                2344999999999999999999999999999999877542  111     22234566889999999999999999


Q ss_pred             CCeEEEEcCCCCcc--eeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe-------eEEeecCCeeEEEE
Q 047260          570 DKSVRLWDAANPNF--CSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFL-------CTHITKGGTAQVRF  640 (784)
Q Consensus       570 Dg~I~IWdl~~~~~--~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~-------~~~~~~~~v~~v~f  640 (784)
                      .|..++|...+...  ....+.||.+.|.+|+|+|.|. ++++.+.|-+-|+|-.-..+       .-.+|....+|++|
T Consensus       337 ~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGe-flLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~  415 (764)
T KOG1063|consen  337 TGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGE-FLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSF  415 (764)
T ss_pred             cCcEEEEeccCccceeeccccccccccceeeeecCCCC-EEEEeccccceeeecccccccceeeecccccccccceeeeh
Confidence            99999999444332  3345679999999999999998 66677789999888654111       11233356788888


Q ss_pred             ecCCCEEEEEECCCcEEEEECCC-------------------------------------------CeE-----------
Q 047260          641 QPRIGQLLAAASDKVVSIFDIET-------------------------------------------DRQ-----------  666 (784)
Q Consensus       641 sp~~~~Ll~~s~Dg~I~IwDl~t-------------------------------------------~~~-----------  666 (784)
                      -+..-.+++|..++.+++|+...                                           +..           
T Consensus       416 vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~  495 (764)
T KOG1063|consen  416 VNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAA  495 (764)
T ss_pred             ccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeeccccc
Confidence            77656677777788889985420                                           000           


Q ss_pred             ----------------------EEEEeCCCCCEEEEEEcCCCCEEEEEeC-----C-eEEEEeCCCCceEEEeccCCCce
Q 047260          667 ----------------------THSLQGHAELVNYICWDTNGDYLASVSQ-----N-LVKVWSMASGECIQELSSNGNQF  718 (784)
Q Consensus       667 ----------------------i~~l~~h~~~V~sl~~spdg~~Lasgsd-----d-~I~IwDl~t~~~i~~l~~~~~~I  718 (784)
                                            ++++.+|...|++++.+|+++++++++.     . .|++|+..+...+..+..|.-.|
T Consensus       496 ~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTV  575 (764)
T KOG1063|consen  496 APCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTV  575 (764)
T ss_pred             CchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEE
Confidence                                  1223478889999999999999999872     2 79999999999999999999999


Q ss_pred             EEEEEecCCCEEEEEECCCeEEEEECCCCceE-----EecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          719 HSCVFHPSYSTLLVVGGISSLELWNMAENKSM-----TIAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       719 ~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~-----~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      +.++|+||+++|++++.|.++.+|........     ....|...|.++.|+|++.+|+|+|.|.+|+||.
T Consensus       576 T~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~  646 (764)
T KOG1063|consen  576 TRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWE  646 (764)
T ss_pred             EEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEe
Confidence            99999999999999999999999998655433     3668999999999999999999999999999994

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=6.6e-23  Score=216.86  Aligned_cols=278  Identities=17%  Similarity=0.273  Sum_probs=230.8

Q ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEECCC--CceeeecCCCCCCeEEEEEccCCC-EEEEEeCCCeEEEEcCCCCc
Q 047260          506 RNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDT--LQTESTPEDHKSVVTDVRFRPNSS-QLATASVDKSVRLWDAANPN  582 (784)
Q Consensus       506 H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t--~~~~~~l~~h~~~It~i~fspdg~-~Latgs~Dg~I~IWdl~~~~  582 (784)
                      ..+.|+|+.|+|...+|++|+.|+.++||.++.  ...+..+.-...+|.+.+|.|+|. .+++++....+++||+.+.+
T Consensus       212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak  291 (514)
T KOG2055|consen  212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK  291 (514)
T ss_pred             CcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence            467899999999999999999999999998873  344555555678999999999998 89999999999999998866


Q ss_pred             ce-eeeccCCC-CCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec--CCeeEEEEecCCCEEEEEECCCcEEE
Q 047260          583 FC-SQAYTGHS-SPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK--GGTAQVRFQPRIGQLLAAASDKVVSI  658 (784)
Q Consensus       583 ~~-~~~~~~h~-~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~--~~v~~v~fsp~~~~Ll~~s~Dg~I~I  658 (784)
                      .. +....++. ..+..+.+++++. +|+..+..|.|.+....+...+..++  +.+..++|+.+++.|++++.+|.|.+
T Consensus       292 ~~k~~~~~g~e~~~~e~FeVShd~~-fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v  370 (514)
T KOG2055|consen  292 VTKLKPPYGVEEKSMERFEVSHDSN-FIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYV  370 (514)
T ss_pred             cccccCCCCcccchhheeEecCCCC-eEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEE
Confidence            32 22223333 3567788899988 77778889999999998887776554  88999999999999999999999999


Q ss_pred             EECCCCeEEEEEeCCCC-CEEEEEEcCCCCEEEEEeCC-eEEEEeCCC------CceEEEeccCCCceEEEEEecCCCEE
Q 047260          659 FDIETDRQTHSLQGHAE-LVNYICWDTNGDYLASVSQN-LVKVWSMAS------GECIQELSSNGNQFHSCVFHPSYSTL  730 (784)
Q Consensus       659 wDl~t~~~i~~l~~h~~-~V~sl~~spdg~~Lasgsdd-~I~IwDl~t------~~~i~~l~~~~~~I~sl~fspdg~~L  730 (784)
                      ||++...+++.+....+ .-+++|.++++.|||+|++. .|.|||..+      .+++.++..-...|+++.|+++...|
T Consensus       371 ~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiL  450 (514)
T KOG2055|consen  371 WNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQIL  450 (514)
T ss_pred             EecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhh
Confidence            99999999999874322 44678888999999999976 999999654      46788887778889999999999998


Q ss_pred             EEEECC--CeEEEEECCCCceEE-e---cccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          731 LVVGGI--SSLELWNMAENKSMT-I---AAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       731 ~s~s~d--g~I~Iwdl~~~~~~~-~---~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      +.++..  ..+++-.+.+..... +   ...-+.|+|++|+|.+.+||.|..+|.|.+|+
T Consensus       451 AiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~k  510 (514)
T KOG2055|consen  451 AIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFK  510 (514)
T ss_pred             hhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEe
Confidence            888764  579988887776652 2   23346799999999999999999999999996

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=8.2e-23  Score=206.99  Aligned_cols=272  Identities=18%  Similarity=0.312  Sum_probs=217.9

Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeecc
Q 047260          510 VTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYT  589 (784)
Q Consensus       510 V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~  589 (784)
                      -.||.|++.|.+||+|+.||.|.|||+.+....+.+.+|..+|++++|+++|+.|+|+|.|..|++||+..+. +...+.
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs-~l~rir  104 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS-PLKRIR  104 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCC-ceeEEE
Confidence            7899999999999999999999999999999999999999999999999999999999999999999999988 444333


Q ss_pred             CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe--eEEeec-----CCeeEEEEecCCCEEEEEECCCcEEEEECC
Q 047260          590 GHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFL--CTHITK-----GGTAQVRFQPRIGQLLAAASDKVVSIFDIE  662 (784)
Q Consensus       590 ~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~--~~~~~~-----~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~  662 (784)
                       ..++|+.+.|+|...+.++++-.+..-.+.++....  ++..-.     ....+..|.+.|+++++|...|.+.++|..
T Consensus       105 -f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~  183 (405)
T KOG1273|consen  105 -FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE  183 (405)
T ss_pred             -ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecc
Confidence             568999999999887777776655555555554322  111111     122344689999999999999999999999


Q ss_pred             CCeEEEEEeCCC-CCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCC-------ce--EEEec--cCCCceEEEEEecCCCE
Q 047260          663 TDRQTHSLQGHA-ELVNYICWDTNGDYLASVSQN-LVKVWSMASG-------EC--IQELS--SNGNQFHSCVFHPSYST  729 (784)
Q Consensus       663 t~~~i~~l~~h~-~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~-------~~--i~~l~--~~~~~I~sl~fspdg~~  729 (784)
                      +.+++..++-.. ..|..+.++..|++|+.-+.| .|+.|+++.-       ++  .+++.  .....-.+|+|+.+|.|
T Consensus       184 t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeY  263 (405)
T KOG1273|consen  184 TLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEY  263 (405)
T ss_pred             hheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccE
Confidence            999999988655 789999999999999887755 9999998631       11  11111  12234478999999999


Q ss_pred             EEEEECC-CeEEEEECCCCceEE-ecccC-CceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          730 LLVVGGI-SSLELWNMAENKSMT-IAAHE-NIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       730 L~s~s~d-g~I~Iwdl~~~~~~~-~~~h~-~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      +++++.. ..++||....|..+. +.+.. .....+.|+|-...|++- ..|.|+||.
T Consensus       264 v~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~  320 (405)
T KOG1273|consen  264 VCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWA  320 (405)
T ss_pred             EEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEE
Confidence            9888854 479999999999884 44555 567889999998888887 778999993

>PTZ00420 coronin; Provisional

Probab=99.91  E-value=5.5e-22  Score=227.32  Aligned_cols=216  Identities=14%  Similarity=0.245  Sum_probs=174.1

Q ss_pred             EeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe-----------eEEeecCCe
Q 047260          567 ASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFL-----------CTHITKGGT  635 (784)
Q Consensus       567 gs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~-----------~~~~~~~~v  635 (784)
                      |+.++.|++|+..... ....+.+|...|.+++|+|+...+|++|+.|+.|++||+....           .+..+...|
T Consensus        50 GG~~gvI~L~~~~r~~-~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V  128 (568)
T PTZ00420         50 GGLIGAIRLENQMRKP-PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI  128 (568)
T ss_pred             CCceeEEEeeecCCCc-eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcE
Confidence            5678899999987644 6677889999999999999866799999999999999997531           123355789


Q ss_pred             eEEEEecCCCEE-EEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEecc
Q 047260          636 AQVRFQPRIGQL-LAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSS  713 (784)
Q Consensus       636 ~~v~fsp~~~~L-l~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~  713 (784)
                      .+++|+|++..+ ++++.|+.|+|||+++++.+..+. |...|.+++|+|+|.+|++++.+ .|+|||+++++.+.++.+
T Consensus       129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~g  207 (568)
T PTZ00420        129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHI  207 (568)
T ss_pred             EEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence            999999998765 577889999999999998877776 66789999999999999988754 999999999999999999


Q ss_pred             CCCceEEE-----EEecCCCEEEEEECCC----eEEEEECCC-CceEEecc---cCCceEEEEEeCCCCEEEEEECCCcE
Q 047260          714 NGNQFHSC-----VFHPSYSTLLVVGGIS----SLELWNMAE-NKSMTIAA---HENIISALAQSPVTGMVASASHDSSV  780 (784)
Q Consensus       714 ~~~~I~sl-----~fspdg~~L~s~s~dg----~I~Iwdl~~-~~~~~~~~---h~~~V~slafspdg~~LaSgs~DG~V  780 (784)
                      |.+.+...     .|++++.+|++++.++    .|+|||++. .+.+....   +.+.+......+++.++++|+.|+.|
T Consensus       208 H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tI  287 (568)
T PTZ00420        208 HDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNC  287 (568)
T ss_pred             ccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeE
Confidence            87765332     3458889999988774    799999985 44443333   33344444445568889999999999


Q ss_pred             EEeC
Q 047260          781 KLWK  784 (784)
Q Consensus       781 ~IWd  784 (784)
                      ++|+
T Consensus       288 r~~e  291 (568)
T PTZ00420        288 RYYQ  291 (568)
T ss_pred             EEEE
Confidence            9996

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.91  E-value=1.1e-23  Score=216.81  Aligned_cols=282  Identities=16%  Similarity=0.224  Sum_probs=228.3

Q ss_pred             CCCCCCcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEE
Q 047260          434 SEGTGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCC  513 (784)
Q Consensus       434 ~~~~~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l  513 (784)
                      .+|+..-+....-.+..-..+++||.||.|++|+....                          +++.++++|.+.|..|
T Consensus        62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR--------------------------~~~~~f~AH~G~V~Gi  115 (433)
T KOG0268|consen   62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQR--------------------------ECIRTFKAHEGLVRGI  115 (433)
T ss_pred             ccccccccchhhcCcchhhhhhccccCceEEEEehhhh--------------------------hhhheeecccCceeeE
Confidence            35555555555555665556678999999999977432                          3567788999999999


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCC
Q 047260          514 HFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSS  593 (784)
Q Consensus       514 ~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~  593 (784)
                      ++..  ..+++++.|.+|+.|.++. .++.++ .....+..|.-+..+..++||+.+  |.|||..... ++..+.--..
T Consensus       116 ~v~~--~~~~tvgdDKtvK~wk~~~-~p~~ti-lg~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~-Pv~smswG~D  188 (433)
T KOG0268|consen  116 CVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTI-LGKSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDN-PVSSMSWGAD  188 (433)
T ss_pred             Eecc--cceEEecCCcceeeeeccC-Ccceee-eccccccccccccccccccccCce--eeecccccCC-ccceeecCCC
Confidence            9986  6788999999999999875 455665 345667788877778889998864  9999998655 5555555567


Q ss_pred             CeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEe--ecCCeeEEEEecCCCEEEEEECCCcEEEEECCCC-eEEEEE
Q 047260          594 PIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHI--TKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETD-RQTHSL  670 (784)
Q Consensus       594 ~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~--~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~-~~i~~l  670 (784)
                      .|.++.|+|....+|++|..|+.|.+||++....+..  .....+.|+|+|..-.++++..|..++.||++.. .++...
T Consensus       189 ti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~  268 (433)
T KOG0268|consen  189 SISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVH  268 (433)
T ss_pred             ceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhh
Confidence            8999999999999999999999999999998766654  3466788999997777888888999999999975 677788


Q ss_pred             eCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEecc-CCCceEEEEEecCCCEEEEEECCCeEEEEECCCCc
Q 047260          671 QGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSS-NGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENK  748 (784)
Q Consensus       671 ~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~-~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~  748 (784)
                      .+|...|.+|.|+|.|.-+++|+-| +|+||..+.+.....+.. .-..|.|+.|+-|..+|++|++|+.|++|.....+
T Consensus       269 ~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Ase  348 (433)
T KOG0268|consen  269 KDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASE  348 (433)
T ss_pred             cccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhh
Confidence            8999999999999999999999966 999999987754433321 12458999999999999999999999999876543

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.91  E-value=1.7e-22  Score=222.74  Aligned_cols=260  Identities=15%  Similarity=0.298  Sum_probs=219.7

Q ss_pred             eEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEE-EEEcC-CCCEEEEEeCCCe
Q 047260          453 FADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTC-CHFSS-DGKLLASSGHDRK  530 (784)
Q Consensus       453 ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~-l~fsp-dg~~Lasgs~Dg~  530 (784)
                      .+..+|.|+++++|.-..                        ..+.+...+.+|.+-|.+ ++|-+ ++-.|++|+.|++
T Consensus        27 ~i~s~sRd~t~~vw~~~~------------------------~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~   82 (745)
T KOG0301|consen   27 CIISGSRDGTVKVWAKKG------------------------KQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTT   82 (745)
T ss_pred             EEeecCCCCceeeeeccC------------------------cccccceecccCcceeeccceeccccCcceEeecccce
Confidence            456788899999994422                        223455667788888888 88876 5557999999999


Q ss_pred             EEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEE
Q 047260          531 VVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCF  610 (784)
Q Consensus       531 I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~s  610 (784)
                      |.+|......++.++++|...|+|++...++. +++||.|.+++||....   +...+.+|...|+++.+.|++  .+++
T Consensus        83 i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~---l~~~l~gH~asVWAv~~l~e~--~~vT  156 (745)
T KOG0301|consen   83 IIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE---LVYSLQGHTASVWAVASLPEN--TYVT  156 (745)
T ss_pred             EEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchh---hhcccCCcchheeeeeecCCC--cEEe
Confidence            99999999999999999999999999887776 99999999999998864   555689999999999999987  6889


Q ss_pred             EeCCCeEEEEeCCC-CeeEEeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEE
Q 047260          611 CDNDNEIQYWSINP-FLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYL  689 (784)
Q Consensus       611 gs~dg~I~iwDl~~-~~~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~L  689 (784)
                      |+.|..|++|.-.+ .+.+..|...|..+++-++ ..+++++.||.|++|++ +++++....+|...|+++....++..+
T Consensus       157 gsaDKtIklWk~~~~l~tf~gHtD~VRgL~vl~~-~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~I  234 (745)
T KOG0301|consen  157 GSADKTIKLWKGGTLLKTFSGHTDCVRGLAVLDD-SHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLI  234 (745)
T ss_pred             ccCcceeeeccCCchhhhhccchhheeeeEEecC-CCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeE
Confidence            99999999998743 2233445566777888776 56899999999999999 788999999999999999977778888


Q ss_pred             EEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCC
Q 047260          690 ASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAEN  747 (784)
Q Consensus       690 asgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~  747 (784)
                      +++++| +++||+..  +|+..+..+...|+++.+-++|. |++|++||.|+||.....
T Consensus       235 vs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~  290 (745)
T KOG0301|consen  235 VSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKD  290 (745)
T ss_pred             EEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEeccc
Confidence            888866 99999976  88888888888899999998887 999999999999987743

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=4.3e-23  Score=202.85  Aligned_cols=243  Identities=23%  Similarity=0.361  Sum_probs=194.1

Q ss_pred             ecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC---ceeeecCCCCCCeEEEEEcc--CCCEEEEEeCCCeEEEEcC
Q 047260          504 RSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTL---QTESTPEDHKSVVTDVRFRP--NSSQLATASVDKSVRLWDA  578 (784)
Q Consensus       504 ~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~---~~~~~l~~h~~~It~i~fsp--dg~~Latgs~Dg~I~IWdl  578 (784)
                      ..|++-|.++...-.|+.||||+.|++|+||.++..   ..+.++.+|.++|..++|..  -|.+||++++||.|.||.-
T Consensus         8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke   87 (299)
T KOG1332|consen    8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE   87 (299)
T ss_pred             hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence            458999999988889999999999999999999753   57889999999999999976  7999999999999999998


Q ss_pred             CCCcc-eeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCCeeEEEEecCCCEEEEEECCCcEE
Q 047260          579 ANPNF-CSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVS  657 (784)
Q Consensus       579 ~~~~~-~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~  657 (784)
                      +++.. ....+..|...|.+|+|.|.+-.+                                      .|+++++||.|.
T Consensus        88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl--------------------------------------~LacasSDG~vs  129 (299)
T KOG1332|consen   88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGL--------------------------------------LLACASSDGKVS  129 (299)
T ss_pred             CCCchhhhhhhhhhcccceeecccccccce--------------------------------------EEEEeeCCCcEE
Confidence            88753 234556899999999999875422                                      244555555555


Q ss_pred             EEECCCC---eEEEEEeCCCCCEEEEEEcCC---C-----------CEEEEEe-CCeEEEEeCCCC--ceEEEeccCCCc
Q 047260          658 IFDIETD---RQTHSLQGHAELVNYICWDTN---G-----------DYLASVS-QNLVKVWSMASG--ECIQELSSNGNQ  717 (784)
Q Consensus       658 IwDl~t~---~~i~~l~~h~~~V~sl~~spd---g-----------~~Lasgs-dd~I~IwDl~t~--~~i~~l~~~~~~  717 (784)
                      |++.+..   ...+....|.-.|++++|.|.   |           +.|++|+ |+.|+||+..++  +.-++|.+|.+.
T Consensus       130 vl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dw  209 (299)
T KOG1332|consen  130 VLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDW  209 (299)
T ss_pred             EEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchh
Confidence            5555433   122334568889999999885   4           4577776 559999999886  344568899999


Q ss_pred             eEEEEEecCC----CEEEEEECCCeEEEEECCCC----ceEEecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          718 FHSCVFHPSY----STLLVVGGISSLELWNMAEN----KSMTIAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       718 I~sl~fspdg----~~L~s~s~dg~I~Iwdl~~~----~~~~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      |+.++|.|.-    .+|++++.||+|.||.....    +...+......+..+.|+..|++|++++.|+.|.+|+
T Consensus       210 VRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk  284 (299)
T KOG1332|consen  210 VRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK  284 (299)
T ss_pred             hhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence            9999999975    46999999999999987632    1123445677899999999999999999999999995

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.90  E-value=2e-22  Score=213.41  Aligned_cols=278  Identities=22%  Similarity=0.324  Sum_probs=219.5

Q ss_pred             ccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCCCEEEE
Q 047260          445 NLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLAS  524 (784)
Q Consensus       445 ~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~~Las  524 (784)
                      .+.++..+ +..++.|+++.-|+...+.+.++..-.-    +.  ...++.++.+-.  ++|...|.|++.|+||+|||+
T Consensus       149 als~d~~~-~fsask~g~i~kw~v~tgk~~~~i~~~~----ev--~k~~~~~~k~~r--~~h~keil~~avS~Dgkylat  219 (479)
T KOG0299|consen  149 ALSPDDKR-VFSASKDGTILKWDVLTGKKDRYIIERD----EV--LKSHGNPLKESR--KGHVKEILTLAVSSDGKYLAT  219 (479)
T ss_pred             Eeeccccc-eeecCCCcceeeeehhcCcccccccccc----hh--hhhccCCCCccc--ccccceeEEEEEcCCCcEEEe
Confidence            33344444 4467889999999887776554433210    00  111222332222  489999999999999999999


Q ss_pred             EeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCC
Q 047260          525 SGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKK  604 (784)
Q Consensus       525 gs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~  604 (784)
                      |+.|..|.||+..+.+.+..+.+|.+.|.+++|-.....|++++.|++|++|+++... .+.++.+|.+.|..|....-+
T Consensus       220 gg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s-~vetlyGHqd~v~~IdaL~re  298 (479)
T KOG0299|consen  220 GGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLS-YVETLYGHQDGVLGIDALSRE  298 (479)
T ss_pred             cCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhH-HHHHHhCCccceeeechhccc
Confidence            9999999999999999999999999999999999988899999999999999998765 677788999999999988665


Q ss_pred             CcEEEEEeCCCeEEEEeCCCCeeE--EeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeC-C--------
Q 047260          605 TDLFCFCDNDNEIQYWSINPFLCT--HITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQG-H--------  673 (784)
Q Consensus       605 ~~ll~sgs~dg~I~iwDl~~~~~~--~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~-h--------  673 (784)
                      . .+.+|+.|.++++|++.....+  ....+.+.|++|-.+ .++++|+.+|.|.+|++.+.+++.+... |        
T Consensus       299 R-~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~  376 (479)
T KOG0299|consen  299 R-CVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDP  376 (479)
T ss_pred             c-eEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeeccccccCCccc
Confidence            5 7777889999999999543322  233457788888755 7899999999999999999988877642 2        


Q ss_pred             ---CCCEEEEEEcCCCCEEEEEe-CCeEEEEeCCCC----ceEEEeccCCCceEEEEEecCCCEEEEEEC
Q 047260          674 ---AELVNYICWDTNGDYLASVS-QNLVKVWSMASG----ECIQELSSNGNQFHSCVFHPSYSTLLVVGG  735 (784)
Q Consensus       674 ---~~~V~sl~~spdg~~Lasgs-dd~I~IwDl~t~----~~i~~l~~~~~~I~sl~fspdg~~L~s~s~  735 (784)
                         ...|++++..|...++++|+ ++.|++|-+..+    .++..+. -.+-|++++|+++|+.|+++..
T Consensus       377 ~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiG  445 (479)
T KOG0299|consen  377 VNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIG  445 (479)
T ss_pred             cccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEecc
Confidence               22789999999999999999 559999999887    4555554 4578999999999997777644

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.90  E-value=2.5e-21  Score=217.16  Aligned_cols=304  Identities=16%  Similarity=0.258  Sum_probs=238.0

Q ss_pred             EeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEE
Q 047260          454 ADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVL  533 (784)
Q Consensus       454 l~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~I  533 (784)
                      +.+|+.+|.+.+|+...+.                          .+.+++++.+.|++|.=+|--+.+|.|..+|+|.|
T Consensus       175 IvvGs~~G~lql~Nvrt~K--------------------------~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~Vii  228 (910)
T KOG1539|consen  175 IVVGSSQGRLQLWNVRTGK--------------------------VVYTFQEFFSRITAIEQSPALDVVAIGLENGTVII  228 (910)
T ss_pred             EEEeecCCcEEEEEeccCc--------------------------EEEEecccccceeEeccCCcceEEEEeccCceEEE
Confidence            3478999999999885443                          67788999999999999998889999999999999


Q ss_pred             EECCCCceeeecCCCCCCeEEEEEccCCCE-EEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEe
Q 047260          534 WNMDTLQTESTPEDHKSVVTDVRFRPNSSQ-LATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCD  612 (784)
Q Consensus       534 Wd~~t~~~~~~l~~h~~~It~i~fspdg~~-Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs  612 (784)
                      ++++..+.+.+++..-+.|+.++|..||+. +++|+..|.+.+||++..+........|.+.|....|.|..+ ++++.+
T Consensus       229 fNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~ep-Vl~ta~  307 (910)
T KOG1539|consen  229 FNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEP-VLVTAG  307 (910)
T ss_pred             EEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCc-eEeecc
Confidence            999999999999755699999999999875 566667799999999987766666668999999999998776 888888


Q ss_pred             CCCeEEEEeCCCCe----eEE---eecCCeeEEEEe-cCCCE--------------------------------------
Q 047260          613 NDNEIQYWSINPFL----CTH---ITKGGTAQVRFQ-PRIGQ--------------------------------------  646 (784)
Q Consensus       613 ~dg~I~iwDl~~~~----~~~---~~~~~v~~v~fs-p~~~~--------------------------------------  646 (784)
                      .|..+++|=.+++.    .++   .|..+..+++|. ..+..                                      
T Consensus       308 ~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~  387 (910)
T KOG1539|consen  308 ADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNV  387 (910)
T ss_pred             CCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccc
Confidence            89988887544211    111   111222233322 22222                                      


Q ss_pred             --------------------------EEEEE-CCCcEEEEECCCCeE-EEEEe-----CCCCCEEEEEEcCCCCEEEEEe
Q 047260          647 --------------------------LLAAA-SDKVVSIFDIETDRQ-THSLQ-----GHAELVNYICWDTNGDYLASVS  693 (784)
Q Consensus       647 --------------------------Ll~~s-~Dg~I~IwDl~t~~~-i~~l~-----~h~~~V~sl~~spdg~~Lasgs  693 (784)
                                                ++++. .+..++.|+.++... .+.+.     .....+++++.++.|++.+.|.
T Consensus       388 ~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~  467 (910)
T KOG1539|consen  388 FSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGY  467 (910)
T ss_pred             cchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEec
Confidence                                      23333 345566666665443 22222     1236789999999999999887


Q ss_pred             C-CeEEEEeCCCCceEEEe---ccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE-------------------
Q 047260          694 Q-NLVKVWSMASGECIQEL---SSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM-------------------  750 (784)
Q Consensus       694 d-d~I~IwDl~t~~~i~~l---~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~-------------------  750 (784)
                      . |.|-+|++.+|-....+   ..|..+|+.++....++.+++++.+|-+++||..+...+                   
T Consensus       468 S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~  547 (910)
T KOG1539|consen  468 SKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSD  547 (910)
T ss_pred             cCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhh
Confidence            4 59999999999888888   489999999999999999999999999999998875411                   


Q ss_pred             -----------------------EecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          751 -----------------------TIAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       751 -----------------------~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                                             .+.+|.+.|++++|||||++|++++.|++|++||
T Consensus       548 l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wD  604 (910)
T KOG1539|consen  548 LLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWD  604 (910)
T ss_pred             hhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEe
Confidence                                   1346999999999999999999999999999998

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.90  E-value=1.4e-22  Score=219.79  Aligned_cols=288  Identities=19%  Similarity=0.248  Sum_probs=231.4

Q ss_pred             CCcceeEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCC--EEEEEeCC
Q 047260          493 KGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSS--QLATASVD  570 (784)
Q Consensus       493 ~~~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~--~Latgs~D  570 (784)
                      +.|+.++-..+++|++.|.||...|.|.+||+|+.||+|+||.+.++.+++++. ..+.|.||+|+|.+.  .||++-.+
T Consensus       386 rPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~  464 (733)
T KOG0650|consen  386 RPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGE  464 (733)
T ss_pred             CCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecC
Confidence            456667778899999999999999999999999999999999999999999984 567899999999554  44444333


Q ss_pred             CeEEEEcCCCC------------------------------------cceeeeccCCCCCeEEEEEcCCCCcEEEEEeCC
Q 047260          571 KSVRLWDAANP------------------------------------NFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDND  614 (784)
Q Consensus       571 g~I~IWdl~~~------------------------------------~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~d  614 (784)
                      . +.|-+..-+                                    ..-+.....|...|..+.||..|.++..++..+
T Consensus       465 ~-~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~  543 (733)
T KOG0650|consen  465 C-VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDS  543 (733)
T ss_pred             c-eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCC
Confidence            3 444432211                                    001223446788999999999999776666543


Q ss_pred             --CeEEEEeCCCCeeE---EeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEE
Q 047260          615 --NEIQYWSINPFLCT---HITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYL  689 (784)
Q Consensus       615 --g~I~iwDl~~~~~~---~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~L  689 (784)
                        ..|.|+++......   ...++.+.++.|+|...+|++++. ..|+|||+.....++.+......|..++.+|.|.-|
T Consensus       544 ~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnl  622 (733)
T KOG0650|consen  544 GNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNL  622 (733)
T ss_pred             CcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeE
Confidence              46888888754443   344588999999999988888776 789999999888888887778889999999999988


Q ss_pred             EEEeCC-eEEEEeCCCC-ceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEE------CCCCceE----EecccCC
Q 047260          690 ASVSQN-LVKVWSMASG-ECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWN------MAENKSM----TIAAHEN  757 (784)
Q Consensus       690 asgsdd-~I~IwDl~t~-~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwd------l~~~~~~----~~~~h~~  757 (784)
                      +.++.+ .+..||+.-. ++.+++..|...+++++|++...++++|+.||++.||.      +..+..+    .+.+|..
T Consensus       623 i~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~  702 (733)
T KOG0650|consen  623 ILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEK  702 (733)
T ss_pred             EEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCcee
Confidence            888855 9999999754 67888999999999999999999999999999998884      2222222    5667766


Q ss_pred             c----eEEEEEeCCCCEEEEEECCCcEEEe
Q 047260          758 I----ISALAQSPVTGMVASASHDSSVKLW  783 (784)
Q Consensus       758 ~----V~slafspdg~~LaSgs~DG~V~IW  783 (784)
                      .    |..+.|+|...+|++++.||+|++|
T Consensus       703 ~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  703 TNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             ecccceEeecccCCCceEEecCCCceEEee
Confidence            5    9999999999999999999999998

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=8.1e-22  Score=223.39  Aligned_cols=272  Identities=15%  Similarity=0.257  Sum_probs=222.6

Q ss_pred             ecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC-ceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCc
Q 047260          504 RSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTL-QTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPN  582 (784)
Q Consensus       504 ~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~-~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~  582 (784)
                      .+|+..-+.|+|.|+|++|++++.||.|++|+.... +...++..+...|.+++..  +.+|++|+.+++|.+|.+.++.
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~   87 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGE   87 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCC
Confidence            359999999999999999999999999999998765 4555554588888888875  5599999999999999998866


Q ss_pred             ceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCC---CeeEEeecCCeeEEEEecCCCEEEEEECCCcEEEE
Q 047260          583 FCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINP---FLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIF  659 (784)
Q Consensus       583 ~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~---~~~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~Iw  659 (784)
                       ....+...+-++.+++|+-+|. +++.|+.|-.|++.+...   .+.++.++++|.++.|+|.+..|++.+.||.|+||
T Consensus        88 -~~~iL~Rftlp~r~~~v~g~g~-~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw  165 (933)
T KOG1274|consen   88 -EDTILARFTLPIRDLAVSGSGK-MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIW  165 (933)
T ss_pred             -ccceeeeeeccceEEEEecCCc-EEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEE
Confidence             3344555678899999999887 777888899999998865   45566677999999999999999999999999999


Q ss_pred             ECCCCeEEEEEeC-------C-CCCEEEEEEcCC-CCEEEEEeCCeEEEEeCCCCceEEEecc--CCCceEEEEEecCCC
Q 047260          660 DIETDRQTHSLQG-------H-AELVNYICWDTN-GDYLASVSQNLVKVWSMASGECIQELSS--NGNQFHSCVFHPSYS  728 (784)
Q Consensus       660 Dl~t~~~i~~l~~-------h-~~~V~sl~~spd-g~~Lasgsdd~I~IwDl~t~~~i~~l~~--~~~~I~sl~fspdg~  728 (784)
                      |+.++.+.+.+.+       . ...+..++|+|+ |.+++.+.++.|++|+..+++....+..  +...+.++.|+|.|.
T Consensus       166 ~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~  245 (933)
T KOG1274|consen  166 DLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGK  245 (933)
T ss_pred             EcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCc
Confidence            9999887776643       1 345677899998 5666777788999999999998888764  345589999999999


Q ss_pred             EEEEEECCCeEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEECCCcEEE
Q 047260          729 TLLVVGGISSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKL  782 (784)
Q Consensus       729 ~L~s~s~dg~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs~DG~V~I  782 (784)
                      ||++++.+|.|.|||+++-..   ......|.+++|.|+.+.|-.-...|...+
T Consensus       246 YiAAs~~~g~I~vWnv~t~~~---~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~  296 (933)
T KOG1274|consen  246 YIAASTLDGQILVWNVDTHER---HEFKRAVCCEAWKPNANAITLITALGTLGV  296 (933)
T ss_pred             EEeeeccCCcEEEEecccchh---ccccceeEEEecCCCCCeeEEEeecccccc
Confidence            999999999999999998222   334567999999999886655544554433

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.90  E-value=1.6e-22  Score=214.40  Aligned_cols=250  Identities=19%  Similarity=0.373  Sum_probs=203.7

Q ss_pred             eEEeEeecCCCceEEEEEcCC-CCEEEEEeCCCeEEEEECCCC----------ceeeecCCCCCCeEEEEEcc-CCCEEE
Q 047260          498 CEVGCIRSRNSKVTCCHFSSD-GKLLASSGHDRKVVLWNMDTL----------QTESTPEDHKSVVTDVRFRP-NSSQLA  565 (784)
Q Consensus       498 ~~i~~l~~H~~~V~~l~fspd-g~~Lasgs~Dg~I~IWd~~t~----------~~~~~l~~h~~~It~i~fsp-dg~~La  565 (784)
                      .++...-.|.+.|+.+.+-|. ..++|+.+..+.|.|||..+.          .+-.++.+|...-+.++|++ ..-.|+
T Consensus       115 v~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Ll  194 (422)
T KOG0264|consen  115 VEISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLL  194 (422)
T ss_pred             eEEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEe
Confidence            344445569999999999994 557788889999999998642          22236778998888999999 445799


Q ss_pred             EEeCCCeEEEEcCCCCcc------eeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCC--C---eeEEeecCC
Q 047260          566 TASVDKSVRLWDAANPNF------CSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINP--F---LCTHITKGG  634 (784)
Q Consensus       566 tgs~Dg~I~IWdl~~~~~------~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~--~---~~~~~~~~~  634 (784)
                      +++.|++|++||+.....      ....+.+|...|..++|++....+|++++.|+.+.|||+++  .   ..+..+.+.
T Consensus       195 s~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~  274 (422)
T KOG0264|consen  195 SGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAE  274 (422)
T ss_pred             eccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCc
Confidence            999999999999975432      34567899999999999999999999999999999999994  2   334556689


Q ss_pred             eeEEEEecCCCEEE-EEECCCcEEEEECCCC-eEEEEEeCCCCCEEEEEEcCCCC-EEEEEe-CCeEEEEeCCCC-----
Q 047260          635 TAQVRFQPRIGQLL-AAASDKVVSIFDIETD-RQTHSLQGHAELVNYICWDTNGD-YLASVS-QNLVKVWSMASG-----  705 (784)
Q Consensus       635 v~~v~fsp~~~~Ll-~~s~Dg~I~IwDl~t~-~~i~~l~~h~~~V~sl~~spdg~-~Lasgs-dd~I~IwDl~t~-----  705 (784)
                      +.|++|+|.+..++ +++.|++|.+||+|+. ++++++.+|...|.+|.|+|+.. .|++++ |+.+.|||+..-     
T Consensus       275 vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~  354 (422)
T KOG0264|consen  275 VNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQS  354 (422)
T ss_pred             eeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccC
Confidence            99999999877655 5555999999999985 68899999999999999999765 555555 559999999641     


Q ss_pred             ---------ceEEEeccCCCceEEEEEecCCCE-EEEEECCCeEEEEECCCC
Q 047260          706 ---------ECIQELSSNGNQFHSCVFHPSYST-LLVVGGISSLELWNMAEN  747 (784)
Q Consensus       706 ---------~~i~~l~~~~~~I~sl~fspdg~~-L~s~s~dg~I~Iwdl~~~  747 (784)
                               +++..-.+|...|..+.|+|..++ |++++.|+.+.||.+...
T Consensus       355 ~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~  406 (422)
T KOG0264|consen  355 PEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAEN  406 (422)
T ss_pred             hhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecccc
Confidence                     345666789999999999999987 667778899999998743

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=9.3e-22  Score=198.98  Aligned_cols=290  Identities=16%  Similarity=0.276  Sum_probs=231.4

Q ss_pred             ceeeeecCCCCCCcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecC
Q 047260          427 KTLMMNGSEGTGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSR  506 (784)
Q Consensus       427 k~~~~~g~~~~~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H  506 (784)
                      +..+..-..|+..-+|.+.-. ....++.+.|.|.+.++|....+.                          ++..+.+|
T Consensus       137 ~~~lvre~~GHkDGiW~Vaa~-~tqpi~gtASADhTA~iWs~Esg~--------------------------CL~~Y~GH  189 (481)
T KOG0300|consen  137 KFRLVRELEGHKDGIWHVAAD-STQPICGTASADHTARIWSLESGA--------------------------CLATYTGH  189 (481)
T ss_pred             eEeehhhhcccccceeeehhh-cCCcceeecccccceeEEeecccc--------------------------ceeeeccc
Confidence            334444445555555655542 233466778899999999764433                          45668899


Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCeEEEEEC------CC----------------------------------CceeeecC
Q 047260          507 NSKVTCCHFSSDGKLLASSGHDRKVVLWNM------DT----------------------------------LQTESTPE  546 (784)
Q Consensus       507 ~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~------~t----------------------------------~~~~~~l~  546 (784)
                      .+.|+||.|++.+.++++++.|++..||..      ..                                  ..++..+.
T Consensus       190 ~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~lt  269 (481)
T KOG0300|consen  190 TGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLT  269 (481)
T ss_pred             ccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeee
Confidence            999999999999999999999999999962      10                                  12445667


Q ss_pred             CCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCC-C
Q 047260          547 DHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINP-F  625 (784)
Q Consensus       547 ~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~-~  625 (784)
                      +|...|.++.|...|..++++++|.+..+||++++. ++..+.+|..+.+.++-+|... ++++.+.|.+.++||++. .
T Consensus       270 gH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge-~v~~LtGHd~ELtHcstHptQr-LVvTsSrDtTFRLWDFReaI  347 (481)
T KOG0300|consen  270 GHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGE-VVNILTGHDSELTHCSTHPTQR-LVVTSSRDTTFRLWDFREAI  347 (481)
T ss_pred             ccccceEehhhhcCcceeeeeeccccceeeeeccCc-eeccccCcchhccccccCCcce-EEEEeccCceeEeccchhhc
Confidence            899999999999999999999999999999999977 8889999999999999999866 899999999999999984 2


Q ss_pred             eeEE---eecCCeeEEEEecCCCEEEEEECCCcEEEEECCCC-eEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEE
Q 047260          626 LCTH---ITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETD-RQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVW  700 (784)
Q Consensus       626 ~~~~---~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~-~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~Iw  700 (784)
                      ..+.   .+...++++.|..+ ..+++++.|.+|+|||+++. .++.++. ...+++.++.+..+.+|+.--|+ .|++|
T Consensus       348 ~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlf  425 (481)
T KOG0300|consen  348 QSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLF  425 (481)
T ss_pred             ceeeeecccccceeEEEEecC-CceeecCCCceEEEeeeccccCcceeee-cCCccceeEeecCCceEEeccCCceEEEE
Confidence            3333   34467888888876 56889999999999999986 4556665 67789999999999999998888 99999


Q ss_pred             eCCCCceEE----EeccCCCceEEEEEecCCC--EEEEEECCCeEEEEECCCC
Q 047260          701 SMASGECIQ----ELSSNGNQFHSCVFHPSYS--TLLVVGGISSLELWNMAEN  747 (784)
Q Consensus       701 Dl~t~~~i~----~l~~~~~~I~sl~fspdg~--~L~s~s~dg~I~Iwdl~~~  747 (784)
                      |+...+..+    .-.+|...|.|++|..+..  .|++++-|..+.-|++...
T Consensus       426 DlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p  478 (481)
T KOG0300|consen  426 DLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP  478 (481)
T ss_pred             ecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence            997654322    2347888999999986643  4899999999999998654

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.89  E-value=8.6e-22  Score=208.91  Aligned_cols=238  Identities=19%  Similarity=0.335  Sum_probs=195.8

Q ss_pred             CCCCCeEEEEEcc-CCCEEEEEeCCCeEEEEcCCCCcce---------eeeccCCCCCeEEEEEcCCCCcEEEEEeCCCe
Q 047260          547 DHKSVVTDVRFRP-NSSQLATASVDKSVRLWDAANPNFC---------SQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNE  616 (784)
Q Consensus       547 ~h~~~It~i~fsp-dg~~Latgs~Dg~I~IWdl~~~~~~---------~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~  616 (784)
                      .|.+.|+.+.+-| +..++++.+..+.|.|||.......         ...+.+|...-+.++|++.....+++++.|+.
T Consensus       122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~  201 (422)
T KOG0264|consen  122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT  201 (422)
T ss_pred             cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence            6999999999999 5567777888999999998753211         22577899888999999999889999999999


Q ss_pred             EEEEeCCCCe----------eEEeecCCeeEEEEecCCCE-EEEEECCCcEEEEECC--CCeEEEEEeCCCCCEEEEEEc
Q 047260          617 IQYWSINPFL----------CTHITKGGTAQVRFQPRIGQ-LLAAASDKVVSIFDIE--TDRQTHSLQGHAELVNYICWD  683 (784)
Q Consensus       617 I~iwDl~~~~----------~~~~~~~~v~~v~fsp~~~~-Ll~~s~Dg~I~IwDl~--t~~~i~~l~~h~~~V~sl~~s  683 (784)
                      |++||+....          ....+...|..++|++.... +.+++.|+.+.|||+|  +.++.+...+|...|+|++|+
T Consensus       202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fn  281 (422)
T KOG0264|consen  202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFN  281 (422)
T ss_pred             EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeC
Confidence            9999997422          22334567888999987655 5566778999999999  567778888999999999999


Q ss_pred             CC-CCEEEEEe-CCeEEEEeCCCC-ceEEEeccCCCceEEEEEecCCC-EEEEEECCCeEEEEECCCCc-----------
Q 047260          684 TN-GDYLASVS-QNLVKVWSMASG-ECIQELSSNGNQFHSCVFHPSYS-TLLVVGGISSLELWNMAENK-----------  748 (784)
Q Consensus       684 pd-g~~Lasgs-dd~I~IwDl~t~-~~i~~l~~~~~~I~sl~fspdg~-~L~s~s~dg~I~Iwdl~~~~-----------  748 (784)
                      |- +.+||+++ |++|++||+|+- +++.++.+|...|.++.|+|... .|++++.|+.+.|||+..-.           
T Consensus       282 p~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dg  361 (422)
T KOG0264|consen  282 PFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDG  361 (422)
T ss_pred             CCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccC
Confidence            95 55677787 559999999985 68899999999999999999865 57778889999999986411           


Q ss_pred             ---e-EEecccCCceEEEEEeCCCC-EEEEEECCCcEEEeC
Q 047260          749 ---S-MTIAAHENIISALAQSPVTG-MVASASHDSSVKLWK  784 (784)
Q Consensus       749 ---~-~~~~~h~~~V~slafspdg~-~LaSgs~DG~V~IWd  784 (784)
                         . +...+|...|..+.|+|... .|+|++.|+.+.||+
T Consensus       362 ppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~  402 (422)
T KOG0264|consen  362 PPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQ  402 (422)
T ss_pred             CcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEee
Confidence               1 24458999999999999877 678889999999996

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=3.8e-22  Score=222.13  Aligned_cols=272  Identities=18%  Similarity=0.336  Sum_probs=211.7

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCeEEEEECCCC----ceeeecCC---CCCCeEEEEEcc-CCCEEEEEeCCCeEEEEcCC
Q 047260          508 SKVTCCHFSSDGKLLASSGHDRKVVLWNMDTL----QTESTPED---HKSVVTDVRFRP-NSSQLATASVDKSVRLWDAA  579 (784)
Q Consensus       508 ~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~----~~~~~l~~---h~~~It~i~fsp-dg~~Latgs~Dg~I~IWdl~  579 (784)
                      ..+..|...++-.-|+.++.. .++||.+...    ++...+..   -...+.+|.|.. +.++|||++..|.|.+||+.
T Consensus        40 ~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln  118 (839)
T KOG0269|consen   40 AKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN  118 (839)
T ss_pred             cccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence            345666777887778777743 5777766532    12112111   113456788886 67899999999999999998


Q ss_pred             C--CcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCC-EEEEEECC
Q 047260          580 N--PNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIG-QLLAAASD  653 (784)
Q Consensus       580 ~--~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~-~Ll~~s~D  653 (784)
                      .  .......+..|...|.+++|++...++|++|+.||.|++||++..+....+.   ..+.+|.|+|... .++++...
T Consensus       119 k~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~ds  198 (839)
T KOG0269|consen  119 KSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDS  198 (839)
T ss_pred             ccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCC
Confidence            7  3335667889999999999999999999999999999999999766655554   5688899999654 56666667


Q ss_pred             CcEEEEECCCC-eEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCce--EEEeccCCCceEEEEEecCCCE
Q 047260          654 KVVSIFDIETD-RQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGEC--IQELSSNGNQFHSCVFHPSYST  729 (784)
Q Consensus       654 g~I~IwDl~t~-~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~--i~~l~~~~~~I~sl~fspdg~~  729 (784)
                      |.|.+||++.. ++...+..|.++|.|+.|+|++.+||+|+.| .|+|||+.+.+.  +.++ ....+|.++.|-|...+
T Consensus       199 G~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tI-nTiapv~rVkWRP~~~~  277 (839)
T KOG0269|consen  199 GYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTI-NTIAPVGRVKWRPARSY  277 (839)
T ss_pred             ceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEE-eecceeeeeeeccCccc
Confidence            99999999975 5677788999999999999999999999966 999999987643  3333 23478999999999877


Q ss_pred             EE-EEEC--CCeEEEEECCCCceE--EecccCCceEEEEEeC-CCCEEEEEECCCcEE
Q 047260          730 LL-VVGG--ISSLELWNMAENKSM--TIAAHENIISALAQSP-VTGMVASASHDSSVK  781 (784)
Q Consensus       730 L~-s~s~--dg~I~Iwdl~~~~~~--~~~~h~~~V~slafsp-dg~~LaSgs~DG~V~  781 (784)
                      .+ +++.  |-.|+|||++..-..  .+..|...++.++|.. |...|.+++.||+|.
T Consensus       278 hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~  335 (839)
T KOG0269|consen  278 HLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVL  335 (839)
T ss_pred             hhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHH
Confidence            44 4433  558999999876543  7789999999999986 445899999999864

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=2e-20  Score=206.21  Aligned_cols=281  Identities=16%  Similarity=0.252  Sum_probs=230.8

Q ss_pred             eeEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC-ceeeecCCC-CCCeEEEEEccCCCEEEEEeCCCeEE
Q 047260          497 FCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTL-QTESTPEDH-KSVVTDVRFRPNSSQLATASVDKSVR  574 (784)
Q Consensus       497 ~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~-~~~~~l~~h-~~~It~i~fspdg~~Latgs~Dg~I~  574 (784)
                      ....+.+.--...|+|++|+.+.+.||.+-.||.|-||++... -....+.++ ...|..++|++ +..|++.+.+|.|.
T Consensus        15 vhrcrf~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~   93 (691)
T KOG2048|consen   15 VHRCRFVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSIT   93 (691)
T ss_pred             EEEEEEEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEE
Confidence            3344445556788999999999999999999999999999853 333445444 46799999994 55789999999999


Q ss_pred             EEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEe-----ecCCeeEEEEecCCCEEEE
Q 047260          575 LWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHI-----TKGGTAQVRFQPRIGQLLA  649 (784)
Q Consensus       575 IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~-----~~~~v~~v~fsp~~~~Ll~  649 (784)
                      -||+.+.+ ....+....+.|++++.+|.+. .++.|++||.++.++..+......     -++.+.++.|+|++..++.
T Consensus        94 EwDl~~lk-~~~~~d~~gg~IWsiai~p~~~-~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~  171 (691)
T KOG2048|consen   94 EWDLHTLK-QKYNIDSNGGAIWSIAINPENT-ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAG  171 (691)
T ss_pred             EEecccCc-eeEEecCCCcceeEEEeCCccc-eEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEe
Confidence            99999877 5566667788999999999886 666777899999999887655433     2478999999999999999


Q ss_pred             EECCCcEEEEECCCCeEEEEEe-------C-CCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEEEeccCCCceEEE
Q 047260          650 AASDKVVSIFDIETDRQTHSLQ-------G-HAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELSSNGNQFHSC  721 (784)
Q Consensus       650 ~s~Dg~I~IwDl~t~~~i~~l~-------~-h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~~l~~~~~~I~sl  721 (784)
                      |+.||.|++||+.++..++...       . ....|.++.|-.++.++..-+.|+|.+||...+..+..+..|...|.++
T Consensus       172 Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~L  251 (691)
T KOG2048|consen  172 GSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLAL  251 (691)
T ss_pred             cccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEE
Confidence            9999999999999987776322       1 3345778888777766555567799999999999999999999999999


Q ss_pred             EEecCCCEEEEEECCCeEEEEECCCCceE-----EecccCCceEEEEEeCCCCEEEEEECCCcEEE
Q 047260          722 VFHPSYSTLLVVGGISSLELWNMAENKSM-----TIAAHENIISALAQSPVTGMVASASHDSSVKL  782 (784)
Q Consensus       722 ~fspdg~~L~s~s~dg~I~Iwdl~~~~~~-----~~~~h~~~V~slafspdg~~LaSgs~DG~V~I  782 (784)
                      +..+++.++++++.|+.|..|...+++..     ....|...|.+++..++  .|++|+.|+.+.+
T Consensus       252 av~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i  315 (691)
T KOG2048|consen  252 AVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAI  315 (691)
T ss_pred             EEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEE
Confidence            99999999999999999999988777541     34578889999999876  8999999998865

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=3.2e-23  Score=229.00  Aligned_cols=251  Identities=23%  Similarity=0.403  Sum_probs=219.9

Q ss_pred             CCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEE
Q 047260          519 GKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSL  598 (784)
Q Consensus       519 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl  598 (784)
                      +.+++.+..+-.++|||...      +..|...|.|+..-..++.+++|+.|..+-+|.+.... ....+.+|..+|.++
T Consensus         4 ~~~~m~~~~~t~Lr~~~~~~------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~-~i~S~~~hespIeSl   76 (825)
T KOG0267|consen    4 MEFLMKTKRATKLRVWDTRE------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPN-AITSLTGHESPIESL   76 (825)
T ss_pred             ccccceeeeeeccccccchh------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCc-hhheeeccCCcceee
Confidence            34455556666788888653      44688899999987788999999999999999998766 555688999999999


Q ss_pred             EEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCC
Q 047260          599 DFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAE  675 (784)
Q Consensus       599 ~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~  675 (784)
                      .|++... ++++|..+|.|++||++..+.++.+.   ..+..+.|+|.+.+.+.++.|+.+++||.+...+.+.+.+|..
T Consensus        77 ~f~~~E~-LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~  155 (825)
T KOG0267|consen   77 TFDTSER-LLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTR  155 (825)
T ss_pred             ecCcchh-hhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcc
Confidence            9998865 88999999999999999877665544   5678899999999999999999999999999999999999999


Q ss_pred             CEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE-Eec
Q 047260          676 LVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM-TIA  753 (784)
Q Consensus       676 ~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~-~~~  753 (784)
                      .|.++.|+|+|++++++++| .++|||+..|+.+.+|..|...+..+.|+|..-.++.|+.|++|++||+++-+.+ ...
T Consensus       156 vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~  235 (825)
T KOG0267|consen  156 VVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGK  235 (825)
T ss_pred             eeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccC
Confidence            99999999999999999986 9999999999999999999999999999999999999999999999999988777 344


Q ss_pred             ccCCceEEEEEeCCCCEEEEEECC
Q 047260          754 AHENIISALAQSPVTGMVASASHD  777 (784)
Q Consensus       754 ~h~~~V~slafspdg~~LaSgs~D  777 (784)
                      .....|.+++|+|++..+++|..+
T Consensus       236 ~~~~~v~~~~fn~~~~~~~~G~q~  259 (825)
T KOG0267|consen  236 PETDGVRSLAFNPDGKIVLSGEQI  259 (825)
T ss_pred             CccCCceeeeecCCceeeecCchh
Confidence            457789999999999998888654

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.88  E-value=6.6e-20  Score=195.69  Aligned_cols=284  Identities=17%  Similarity=0.328  Sum_probs=222.7

Q ss_pred             ceeEEeEeecCC-CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEE
Q 047260          496 TFCEVGCIRSRN-SKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVR  574 (784)
Q Consensus       496 ~~~~i~~l~~H~-~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~  574 (784)
                      -++....+..++ .-|.|++|.++|. ++||.++|.|.||+..+.+..+....|.+.|.+++...+|. |++|+.|..|.
T Consensus       234 l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~  311 (626)
T KOG2106|consen  234 LVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT-LLSGGKDRKII  311 (626)
T ss_pred             eEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc-EeecCccceEE
Confidence            334444444433 5699999999997 77899999999999998888888779999999999999986 55599999999


Q ss_pred             EEcCCCCcc---------------------------------------eeeeccCCCCCeEEEEEcCCCCcEEEEEeCCC
Q 047260          575 LWDAANPNF---------------------------------------CSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDN  615 (784)
Q Consensus       575 IWdl~~~~~---------------------------------------~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg  615 (784)
                      .||-.-.+.                                       ......+|......++.+|+.+ .+++|+.|+
T Consensus       312 ~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~-q~~T~gqdk  390 (626)
T KOG2106|consen  312 LWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKN-QLLTCGQDK  390 (626)
T ss_pred             eccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChh-heeeccCcc
Confidence            998321000                                       0011236777888999999876 788999999


Q ss_pred             eEEEEeCCCCeeEEeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC
Q 047260          616 EIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN  695 (784)
Q Consensus       616 ~I~iwDl~~~~~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd  695 (784)
                      .+++|+-....-...+..+..++.|+|.+ .+++|+..|...+.|.++...+..-.. ..+++++.|+|+|.+||.++.|
T Consensus       391 ~v~lW~~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d  468 (626)
T KOG2106|consen  391 HVRLWNDHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHD  468 (626)
T ss_pred             eEEEccCCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCC
Confidence            99999955566667788999999999999 999999999999999999665554444 8899999999999999999966


Q ss_pred             -eEEEEeCCCC-ceEEEe-ccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCce-----------------------
Q 047260          696 -LVKVWSMASG-ECIQEL-SSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKS-----------------------  749 (784)
Q Consensus       696 -~I~IwDl~t~-~~i~~l-~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~-----------------------  749 (784)
                       .|+||.+... ...... +.+..+|+.+.|++|+.+|.+-+.|-.|..|.....+.                       
T Consensus       469 ~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~  548 (626)
T KOG2106|consen  469 NHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGG  548 (626)
T ss_pred             CeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecc
Confidence             9999988654 333222 34458999999999999999999999999994332110                       


Q ss_pred             -----------------------------------------EEecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          750 -----------------------------------------MTIAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       750 -----------------------------------------~~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                                                               ..+.+|.+.|++++|..+...|++.+.|.+|..|+
T Consensus       549 s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~  624 (626)
T KOG2106|consen  549 SDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWR  624 (626)
T ss_pred             cCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEE
Confidence                                                     01234777788888887777777777888888885

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.88  E-value=1.2e-21  Score=214.05  Aligned_cols=271  Identities=23%  Similarity=0.373  Sum_probs=207.6

Q ss_pred             EEEcC---CCCEEEEEeCCCeEEEEECCCCcee------eecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcc
Q 047260          513 CHFSS---DGKLLASSGHDRKVVLWNMDTLQTE------STPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNF  583 (784)
Q Consensus       513 l~fsp---dg~~Lasgs~Dg~I~IWd~~t~~~~------~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~  583 (784)
                      +.|++   ...+||.+.+||.|.++|.......      .....|...|.++.|.|....|++++.|.++++||++..+ 
T Consensus        55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~-  133 (720)
T KOG0321|consen   55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSR-  133 (720)
T ss_pred             ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccce-
Confidence            56665   3348999999999999998754332      4556899999999999977889999999999999999876 


Q ss_pred             eee--eccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe--------------------eE-----Ee-----e
Q 047260          584 CSQ--AYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFL--------------------CT-----HI-----T  631 (784)
Q Consensus       584 ~~~--~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~--------------------~~-----~~-----~  631 (784)
                      +..  .+.+|...|.+++|.|.+..+|++|+.||.|.|||++...                    ..     ..     .
T Consensus       134 l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~  213 (720)
T KOG0321|consen  134 LVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAA  213 (720)
T ss_pred             eecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccc
Confidence            443  3789999999999999999999999999999999986211                    00     00     0


Q ss_pred             cCCeeE---EEEecCCCEEEEEEC-CCcEEEEECCCCeEEEE--------EeCC---CCCEEEEEEcCCCCEEE-EEeCC
Q 047260          632 KGGTAQ---VRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHS--------LQGH---AELVNYICWDTNGDYLA-SVSQN  695 (784)
Q Consensus       632 ~~~v~~---v~fsp~~~~Ll~~s~-Dg~I~IwDl~t~~~i~~--------l~~h---~~~V~sl~~spdg~~La-sgsdd  695 (784)
                      ...+..   +.+..|...|++++. |+.|+|||+++......        +..|   ...+.+++.+..|.+|+ +|.|+
T Consensus       214 s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~  293 (720)
T KOG0321|consen  214 SNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDN  293 (720)
T ss_pred             cCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCC
Confidence            012223   456667788888888 99999999997643322        2223   33577888888777655 56677


Q ss_pred             eEEEEeCCCC--ceEEEeccCCCc--eEEEEEecCCCEEEEEECCCeEEEEECCCCceE--EecccCCceEEEEEeCCC-
Q 047260          696 LVKVWSMASG--ECIQELSSNGNQ--FHSCVFHPSYSTLLVVGGISSLELWNMAENKSM--TIAAHENIISALAQSPVT-  768 (784)
Q Consensus       696 ~I~IwDl~t~--~~i~~l~~~~~~--I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~--~~~~h~~~V~slafspdg-  768 (784)
                      .|++|++.+.  .++..+.++...  ...-..+|++.++++++.|...++|.+.....-  .+.+|.-.|++++|.|.. 
T Consensus       294 sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~  373 (720)
T KOG0321|consen  294 SIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSAT  373 (720)
T ss_pred             cEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccC
Confidence            9999999864  344455444222  233457899999999999999999999887644  677999999999999854 


Q ss_pred             CEEEEEECCCcEEEeC
Q 047260          769 GMVASASHDSSVKLWK  784 (784)
Q Consensus       769 ~~LaSgs~DG~V~IWd  784 (784)
                      .-+++|++|.+++||+
T Consensus       374 t~v~TcSdD~~~kiW~  389 (720)
T KOG0321|consen  374 TPVATCSDDFRVKIWR  389 (720)
T ss_pred             CCceeeccCcceEEEe
Confidence            3578889999999996

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=2.6e-21  Score=205.48  Aligned_cols=239  Identities=17%  Similarity=0.238  Sum_probs=202.6

Q ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCC-----
Q 047260          506 RNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAAN-----  580 (784)
Q Consensus       506 H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~-----  580 (784)
                      -.++|.|++-+|+|.+|+.|+..|.|++|.+.+|..+..+..|-..|+|+.|+-|+.+|+||+.||.|.+|++.+     
T Consensus        80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~  159 (476)
T KOG0646|consen   80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSAD  159 (476)
T ss_pred             cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccc
Confidence            467899999999999999988999999999999999999999999999999999999999999999999998742     


Q ss_pred             ---CcceeeeccCCCCCeEEEEEcCCC-CcEEEEEeCCCeEEEEeCCCCeeEEe--ecCCeeEEEEecCCCEEEEEECCC
Q 047260          581 ---PNFCSQAYTGHSSPIMSLDFHPKK-TDLFCFCDNDNEIQYWSINPFLCTHI--TKGGTAQVRFQPRIGQLLAAASDK  654 (784)
Q Consensus       581 ---~~~~~~~~~~h~~~V~sl~~sp~~-~~ll~sgs~dg~I~iwDl~~~~~~~~--~~~~v~~v~fsp~~~~Ll~~s~Dg  654 (784)
                         .......+..|.-+|+++...+.+ ...+++++.|.++++||+..+..+..  +...+.+++++|.+..+++|+.+|
T Consensus       160 ~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G  239 (476)
T KOG0646|consen  160 NDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEG  239 (476)
T ss_pred             cCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcc
Confidence               123567788999999999988763 45788999999999999998877654  457789999999999999999999


Q ss_pred             cEEEEECCCC----------------eEEEEEeCCCC--CEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCC
Q 047260          655 VVSIFDIETD----------------RQTHSLQGHAE--LVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNG  715 (784)
Q Consensus       655 ~I~IwDl~t~----------------~~i~~l~~h~~--~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~  715 (784)
                      .|.+.++...                ..+..+.+|.+  .|+|++.+-||.+|++|+.+ .|+|||+.+..+++++....
T Consensus       240 ~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~k  319 (476)
T KOG0646|consen  240 KIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSK  319 (476)
T ss_pred             eEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhc
Confidence            9999887542                24556778888  99999999999999999965 99999999999999998777


Q ss_pred             CceEEEEEecCCCEEEEEECC-CeEEEEEC
Q 047260          716 NQFHSCVFHPSYSTLLVVGGI-SSLELWNM  744 (784)
Q Consensus       716 ~~I~sl~fspdg~~L~s~s~d-g~I~Iwdl  744 (784)
                      ++|+.+.+.|-.+.++.+... ..+-.|++
T Consensus       320 gpVtnL~i~~~~~~~~l~~~~~ps~~~~~l  349 (476)
T KOG0646|consen  320 GPVTNLQINPLERGIILFEHKQPSLPNPHL  349 (476)
T ss_pred             cccceeEeeccccceecccccCccCCchHh
Confidence            899999997765545443322 23444443

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=7.4e-21  Score=193.14  Aligned_cols=261  Identities=14%  Similarity=0.218  Sum_probs=206.7

Q ss_pred             cccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCC
Q 047260          440 LASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDG  519 (784)
Q Consensus       440 ~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg  519 (784)
                      .++++.|.+....|+ ++|||+++++|+.....                           +...-.|..+|.+|+|.++ 
T Consensus        15 ~IS~v~f~~~~~~LL-vssWDgslrlYdv~~~~---------------------------l~~~~~~~~plL~c~F~d~-   65 (323)
T KOG1036|consen   15 GISSVKFSPSSSDLL-VSSWDGSLRLYDVPANS---------------------------LKLKFKHGAPLLDCAFADE-   65 (323)
T ss_pred             ceeeEEEcCcCCcEE-EEeccCcEEEEeccchh---------------------------hhhheecCCceeeeeccCC-
Confidence            356667765555555 68899999999874431                           1111238999999999874 


Q ss_pred             CEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEE
Q 047260          520 KLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLD  599 (784)
Q Consensus       520 ~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~  599 (784)
                      ..+++|+.||.|+++|+.++... .+-.|..+|.||.+++....+++|++|++|++||.+... ....+ .....|.++.
T Consensus        66 ~~~~~G~~dg~vr~~Dln~~~~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~-~~~~~-d~~kkVy~~~  142 (323)
T KOG1036|consen   66 STIVTGGLDGQVRRYDLNTGNED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKV-VVGTF-DQGKKVYCMD  142 (323)
T ss_pred             ceEEEeccCceEEEEEecCCcce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccc-ccccc-ccCceEEEEe
Confidence            57899999999999999987764 445799999999999988899999999999999998633 33333 2345899988


Q ss_pred             EcCCCCcEEEEEeCCCeEEEEeCCCCeeE-----EeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCC----eEEEEE
Q 047260          600 FHPKKTDLFCFCDNDNEIQYWSINPFLCT-----HITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETD----RQTHSL  670 (784)
Q Consensus       600 ~sp~~~~ll~sgs~dg~I~iwDl~~~~~~-----~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~----~~i~~l  670 (784)
                      ...+   .|++|..+..|.+||+++....     ..++-.+.+|++.|.+.-+++++-||.|.+=.++..    +.-..|
T Consensus       143 v~g~---~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaF  219 (323)
T KOG1036|consen  143 VSGN---RLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAF  219 (323)
T ss_pred             ccCC---EEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeE
Confidence            7633   6777888999999999975443     334567889999998888999999999988776654    344455


Q ss_pred             eCCCC---------CEEEEEEcCCCCEEEEEe-CCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEEC
Q 047260          671 QGHAE---------LVNYICWDTNGDYLASVS-QNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGG  735 (784)
Q Consensus       671 ~~h~~---------~V~sl~~spdg~~Lasgs-dd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~  735 (784)
                      +.|..         +|++|+|+|-...|++|+ ||.|.+||+.+.+.+..+......|.+++|+.+|..|++++.
T Consensus       220 kCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  220 KCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             EeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence            55532         789999999888888877 569999999999999999888888999999999999999876

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.88  E-value=1.1e-21  Score=208.49  Aligned_cols=281  Identities=15%  Similarity=0.293  Sum_probs=224.3

Q ss_pred             CCCcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEc
Q 047260          437 TGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFS  516 (784)
Q Consensus       437 ~~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fs  516 (784)
                      ++-++.++.+.... +.+.+| -.+.|++|+....++ |                   ++...+-++. ...-|.+|.+.
T Consensus       418 HGEvVcAvtIS~~t-rhVyTg-GkgcVKVWdis~pg~-k-------------------~PvsqLdcl~-rdnyiRSckL~  474 (705)
T KOG0639|consen  418 HGEVVCAVTISNPT-RHVYTG-GKGCVKVWDISQPGN-K-------------------SPVSQLDCLN-RDNYIRSCKLL  474 (705)
T ss_pred             cCcEEEEEEecCCc-ceeEec-CCCeEEEeeccCCCC-C-------------------CccccccccC-cccceeeeEec
Confidence            34455555554444 444445 357899998754421 1                   1111122221 45669999999


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCC--ceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCC
Q 047260          517 SDGKLLASSGHDRKVVLWNMDTL--QTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSP  594 (784)
Q Consensus       517 pdg~~Lasgs~Dg~I~IWd~~t~--~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~  594 (784)
                      |||+.|++|+.-.+|.|||+..-  .....+....-.+.+++.+||.+..++|+.||.|.|||+.+.. .++.+.+|.+.
T Consensus       475 pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~-~VrqfqGhtDG  553 (705)
T KOG0639|consen  475 PDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT-LVRQFQGHTDG  553 (705)
T ss_pred             CCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce-eeecccCCCCC
Confidence            99999999999999999999754  3334444445678889999999999999999999999999855 88999999999


Q ss_pred             eEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEe--ecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeC
Q 047260          595 IMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHI--TKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQG  672 (784)
Q Consensus       595 V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~--~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~  672 (784)
                      +.||.++++|. .|-+|+-|.+|+.||++.++.+..  +...|.++.++|.+.++++|-.++.|.|...... ..+.+.-
T Consensus       554 ascIdis~dGt-klWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp-~kyqlhl  631 (705)
T KOG0639|consen  554 ASCIDISKDGT-KLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP-EKYQLHL  631 (705)
T ss_pred             ceeEEecCCCc-eeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCc-cceeecc
Confidence            99999999987 677899999999999998877654  4578999999999999999999999998887643 3445666


Q ss_pred             CCCCEEEEEEcCCCCEEEEEeC-CeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEEC
Q 047260          673 HAELVNYICWDTNGDYLASVSQ-NLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNM  744 (784)
Q Consensus       673 h~~~V~sl~~spdg~~Lasgsd-d~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl  744 (784)
                      |+..|.++.|.+.|+++++.+. +.+..|...-|..+...+.. +.|.+|.++.+.++|++|+.|....||.+
T Consensus       632 heScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~-SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  632 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES-SSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             cccEEEEEEecccCceeeecCchhhhhhccCccccceeecccc-CcceeeeeccCceEEEecCCCcceEEEEE
Confidence            9999999999999999998874 59999999999888777554 78999999999999999999998888865

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.87  E-value=8.3e-23  Score=225.73  Aligned_cols=237  Identities=22%  Similarity=0.407  Sum_probs=215.1

Q ss_pred             eEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEc
Q 047260          498 CEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWD  577 (784)
Q Consensus       498 ~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWd  577 (784)
                      .+.+.+-.|...|.|+..-..++.+++|+.|..+-+|.+.....+..+.+|..+|.+|.|+++..+|++|+.+|+|++||
T Consensus        19 ~~~~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wD   98 (825)
T KOG0267|consen   19 WDTREFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWD   98 (825)
T ss_pred             ccchhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeee
Confidence            34455567999999999977889999999999999999988888888999999999999999999999999999999999


Q ss_pred             CCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecC---CeeEEEEecCCCEEEEEECCC
Q 047260          578 AANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKG---GTAQVRFQPRIGQLLAAASDK  654 (784)
Q Consensus       578 l~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~---~v~~v~fsp~~~~Ll~~s~Dg  654 (784)
                      ++..+ .++.+.+|...+.++.|+|.+. ++++++.|+.+++||++..-|.+.+++   .+.++.|+|+|.+++.++.|.
T Consensus        99 leeAk-~vrtLtgh~~~~~sv~f~P~~~-~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~  176 (825)
T KOG0267|consen   99 LEEAK-IVRTLTGHLLNITSVDFHPYGE-FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDN  176 (825)
T ss_pred             hhhhh-hhhhhhccccCcceeeeccceE-EeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcc
Confidence            99866 6788999999999999999987 568999999999999998888877774   466788999999999999999


Q ss_pred             cEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEE
Q 047260          655 VVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVV  733 (784)
Q Consensus       655 ~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~  733 (784)
                      .++|||+..++....|..|...+..+.|+|...+++.|+.+ +|++||+++.+.+.........|.+..|+|++..+++|
T Consensus       177 tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G  256 (825)
T KOG0267|consen  177 TVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSG  256 (825)
T ss_pred             eeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecC
Confidence            99999999999999999999999999999999999999866 99999999999998888888899999999999877777


Q ss_pred             ECC
Q 047260          734 GGI  736 (784)
Q Consensus       734 s~d  736 (784)
                      ..+
T Consensus       257 ~q~  259 (825)
T KOG0267|consen  257 EQI  259 (825)
T ss_pred             chh
Confidence            655

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=9.4e-21  Score=191.89  Aligned_cols=252  Identities=15%  Similarity=0.296  Sum_probs=180.5

Q ss_pred             ecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECC----CCceeeecCCCCCCeEEEEEcc--CCCEEEEEeCCCeEEEEc
Q 047260          504 RSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMD----TLQTESTPEDHKSVVTDVRFRP--NSSQLATASVDKSVRLWD  577 (784)
Q Consensus       504 ~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~----t~~~~~~l~~h~~~It~i~fsp--dg~~Latgs~Dg~I~IWd  577 (784)
                      .+|.+-|+|+.|.+.|+.+|+|+.|.+|+|||.+    +..+....+.|.+.|..|.|.+  -|..+|+++.|++++||.
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE   89 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE   89 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence            4688999999999999999999999999999964    3456667789999999999986  689999999999999997


Q ss_pred             CCCCc--------ceeeeccCCCCCeEEEEEcCCCC-cEEEEEeCCCeEEEEeCCCCeeEEeecCCeeEEEEecCCCEEE
Q 047260          578 AANPN--------FCSQAYTGHSSPIMSLDFHPKKT-DLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLL  648 (784)
Q Consensus       578 l~~~~--------~~~~~~~~h~~~V~sl~~sp~~~-~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v~~v~fsp~~~~Ll  648 (784)
                      -....        ....++....+.|+.|.|.|... ..+++++.||.|+||+.-...                      
T Consensus        90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~----------------------  147 (361)
T KOG2445|consen   90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPM----------------------  147 (361)
T ss_pred             ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcc----------------------
Confidence            53111        01223334445566666665422 234444455555555432110                      


Q ss_pred             EEECCCcEEEEECCCC-e-EEEEEeCCCCCEEEEEEcCC---CCEEEEEeCC------eEEEEeCCCC----ceEEEecc
Q 047260          649 AAASDKVVSIFDIETD-R-QTHSLQGHAELVNYICWDTN---GDYLASVSQN------LVKVWSMASG----ECIQELSS  713 (784)
Q Consensus       649 ~~s~Dg~I~IwDl~t~-~-~i~~l~~h~~~V~sl~~spd---g~~Lasgsdd------~I~IwDl~t~----~~i~~l~~  713 (784)
                            .++-|.+... + .+.....+..+..|+.|+|.   ..+|++|+++      .++||....+    ..+.++.+
T Consensus       148 ------nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d  221 (361)
T KOG2445|consen  148 ------NLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPD  221 (361)
T ss_pred             ------ccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCC
Confidence                  0111111100 0 00011136667889999974   4588998876      8999987543    35677889


Q ss_pred             CCCceEEEEEecCC----CEEEEEECCCeEEEEECCCCc--------------------eE-EecccCCceEEEEEeCCC
Q 047260          714 NGNQFHSCVFHPSY----STLLVVGGISSLELWNMAENK--------------------SM-TIAAHENIISALAQSPVT  768 (784)
Q Consensus       714 ~~~~I~sl~fspdg----~~L~s~s~dg~I~Iwdl~~~~--------------------~~-~~~~h~~~V~slafspdg  768 (784)
                      |..+|++++|.|+-    ..|++++.|| |+||.+....                    .+ .+..|.+.|..+.|+-.|
T Consensus       222 ~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtG  300 (361)
T KOG2445|consen  222 HTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTG  300 (361)
T ss_pred             CCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeee
Confidence            99999999999963    4689999999 9999987411                    11 356899999999999999


Q ss_pred             CEEEEEECCCcEEEeC
Q 047260          769 GMVASASHDSSVKLWK  784 (784)
Q Consensus       769 ~~LaSgs~DG~V~IWd  784 (784)
                      ..|++.|+||+||+|+
T Consensus       301 tiLsStGdDG~VRLWk  316 (361)
T KOG2445|consen  301 TILSSTGDDGCVRLWK  316 (361)
T ss_pred             eEEeecCCCceeeehh
Confidence            9999999999999996

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.87  E-value=1.7e-19  Score=192.49  Aligned_cols=272  Identities=17%  Similarity=0.205  Sum_probs=213.5

Q ss_pred             ecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeee---cCCC-CCCeEEEEEccCCCEEEEEeCCCeEEEEcCC
Q 047260          504 RSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTEST---PEDH-KSVVTDVRFRPNSSQLATASVDKSVRLWDAA  579 (784)
Q Consensus       504 ~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~---l~~h-~~~It~i~fspdg~~Latgs~Dg~I~IWdl~  579 (784)
                      +..++.|..+.|+|.+..|++.+..+.+.+|+.+.+...++   ++.+ +..|.|++|.++|. ++||..+|.|.||+..
T Consensus       197 k~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~  275 (626)
T KOG2106|consen  197 KTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKG  275 (626)
T ss_pred             eeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCC
Confidence            34667899999999666555555578999999998766554   3332 36799999999886 7899999999999998


Q ss_pred             CCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC--------------ee------------------
Q 047260          580 NPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPF--------------LC------------------  627 (784)
Q Consensus       580 ~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~--------------~~------------------  627 (784)
                      +........ .|.+.|.+++...+|.  +++|+.|..|..||-+-.              +.                  
T Consensus       276 ~~~~~k~~~-aH~ggv~~L~~lr~Gt--llSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL  352 (626)
T KOG2106|consen  276 TNRISKQVH-AHDGGVFSLCMLRDGT--LLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFIL  352 (626)
T ss_pred             CceEEeEee-ecCCceEEEEEecCcc--EeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEE
Confidence            876544555 9999999999998885  556999999999984200              00                  


Q ss_pred             -----------EEeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CC
Q 047260          628 -----------THITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVS-QN  695 (784)
Q Consensus       628 -----------~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgs-dd  695 (784)
                                 +..+......++.+|+.+.+++++.|+.+++|+  ..+++.+.. ...++.|+.|+|.| .++.|. .+
T Consensus       353 ~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G  428 (626)
T KOG2106|consen  353 QGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATG  428 (626)
T ss_pred             EeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccc
Confidence                       001112334567788889999999999999999  444544433 56788999999999 777776 66


Q ss_pred             eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE--Ee-cccCCceEEEEEeCCCCEEE
Q 047260          696 LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM--TI-AAHENIISALAQSPVTGMVA  772 (784)
Q Consensus       696 ~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~--~~-~~h~~~V~slafspdg~~La  772 (784)
                      ...|.|.++...+..-.. ..++.++.|+|+|.+|++++.|+.|+||.+..+...  .. ..|..+|+.+.|++|+++|.
T Consensus       429 ~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~  507 (626)
T KOG2106|consen  429 RWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLV  507 (626)
T ss_pred             eEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEE
Confidence            999999999666655555 889999999999999999999999999998765443  22 23448999999999999999


Q ss_pred             EEECCCcEEEeC
Q 047260          773 SASHDSSVKLWK  784 (784)
Q Consensus       773 Sgs~DG~V~IWd  784 (784)
                      +-+.|-.|..|+
T Consensus       508 ~~S~d~eiLyW~  519 (626)
T KOG2106|consen  508 SNSGDYEILYWK  519 (626)
T ss_pred             eccCceEEEEEc
Confidence            999999999994

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=2.9e-20  Score=210.91  Aligned_cols=235  Identities=17%  Similarity=0.261  Sum_probs=203.5

Q ss_pred             CCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC-
Q 047260          547 DHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPF-  625 (784)
Q Consensus       547 ~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~-  625 (784)
                      .|....+.|+|.|+|.+|++|+.||.|++|+.........++..+...|.+++....   .|++|+.++.|.+|.+..+ 
T Consensus        11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~---~f~~~s~~~tv~~y~fps~~   87 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSN---HFLTGSEQNTVLRYKFPSGE   87 (933)
T ss_pred             hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeeccc---ceEEeeccceEEEeeCCCCC
Confidence            688899999999999999999999999999987653233334337788888887544   7889999999999999764 


Q ss_pred             --eeEEeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEeC
Q 047260          626 --LCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVS-QNLVKVWSM  702 (784)
Q Consensus       626 --~~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgs-dd~I~IwDl  702 (784)
                        ..+..+.-++.+++|+-+|.++++|+.|-.|++.++.+......+.+|.++|.++.|+|.+++||+.+ +|.|+|||+
T Consensus        88 ~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~  167 (933)
T KOG1274|consen   88 EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDL  167 (933)
T ss_pred             ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEc
Confidence              45677888999999999999999999999999999999999999999999999999999999999987 669999999


Q ss_pred             CCCceEEEeccC--------CCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE-Ee--cccCCceEEEEEeCCCCEE
Q 047260          703 ASGECIQELSSN--------GNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM-TI--AAHENIISALAQSPVTGMV  771 (784)
Q Consensus       703 ~t~~~i~~l~~~--------~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~-~~--~~h~~~V~slafspdg~~L  771 (784)
                      .++.+..++.+-        ...+..++|+|++..+++...|+.|++|+..+.... .+  ..+...+.++.|+|.|.||
T Consensus       168 ~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~Yi  247 (933)
T KOG1274|consen  168 QDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYI  247 (933)
T ss_pred             ccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEE
Confidence            999887776532        345678899999999999999999999999998765 22  3455559999999999999


Q ss_pred             EEEECCCcEEEeC
Q 047260          772 ASASHDSSVKLWK  784 (784)
Q Consensus       772 aSgs~DG~V~IWd  784 (784)
                      |+++.||.|.|||
T Consensus       248 AAs~~~g~I~vWn  260 (933)
T KOG1274|consen  248 AASTLDGQILVWN  260 (933)
T ss_pred             eeeccCCcEEEEe
Confidence            9999999999997

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=3.1e-20  Score=197.32  Aligned_cols=252  Identities=13%  Similarity=0.235  Sum_probs=202.0

Q ss_pred             CeEEEEECCCCceeeecCCCC-CCeEEEEEccCCCEEEEEeC-CCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCc
Q 047260          529 RKVVLWNMDTLQTESTPEDHK-SVVTDVRFRPNSSQLATASV-DKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTD  606 (784)
Q Consensus       529 g~I~IWd~~t~~~~~~l~~h~-~~It~i~fspdg~~Latgs~-Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~  606 (784)
                      ..+.+||+.+|.....+++.. ..-.++..- .+.+++++.. ...|.+|.+....... ...-..++|.++.-+|.|. 
T Consensus        18 ~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~-q~~v~Pg~v~al~s~n~G~-   94 (476)
T KOG0646|consen   18 INCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVV-QYIVLPGPVHALASSNLGY-   94 (476)
T ss_pred             cceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhh-hhcccccceeeeecCCCce-
Confidence            459999999999998887652 211122111 3456666654 4578999987654333 2334568899999999986 


Q ss_pred             EEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEEEECCCcEEEEECC---------CCeEEEEEeCCC
Q 047260          607 LFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLAAASDKVVSIFDIE---------TDRQTHSLQGHA  674 (784)
Q Consensus       607 ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~---------t~~~i~~l~~h~  674 (784)
                      +++.|...|.|++|.+.++..+..+.   ..++|+.|+-++.+|++++.||.|.+|++-         +-++++.|..|.
T Consensus        95 ~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~Ht  174 (476)
T KOG0646|consen   95 FLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHT  174 (476)
T ss_pred             EEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCc
Confidence            55566689999999999988765544   679999999999999999999999999763         346788999999


Q ss_pred             CCEEEEEEcCC--CCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCc---
Q 047260          675 ELVNYICWDTN--GDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENK---  748 (784)
Q Consensus       675 ~~V~sl~~spd--g~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~---  748 (784)
                      -+|+++...+.  ..+|++++.| ++++||+..+..+.++... ..+.+|+.+|-+..+++|+.+|.|.+.++....   
T Consensus       175 lsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp-~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~  253 (476)
T KOG0646|consen  175 LSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFP-SSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQS  253 (476)
T ss_pred             ceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecC-CcceeEEEcccccEEEecCCcceEEeeehhcCCccc
Confidence            99999988765  3578888866 9999999999999888654 778999999999999999999999988765432   


Q ss_pred             --------------eEEecccCC--ceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          749 --------------SMTIAAHEN--IISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       749 --------------~~~~~~h~~--~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                                    ...+.+|.+  .|+|++++-||.+|++|+.||.|+|||
T Consensus       254 ~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWd  305 (476)
T KOG0646|consen  254 AGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWD  305 (476)
T ss_pred             ccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEe
Confidence                          124668888  999999999999999999999999997

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.86  E-value=5.5e-20  Score=184.99  Aligned_cols=303  Identities=19%  Similarity=0.315  Sum_probs=224.8

Q ss_pred             CcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcC-
Q 047260          439 SLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSS-  517 (784)
Q Consensus       439 ~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fsp-  517 (784)
                      ..+.+........+++..|..|+.+.+|+.....+-+.-.-..+.           ....-...-.+|.-.|.++.|-| 
T Consensus        44 GsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~-----------~c~v~~~h~~~Hky~iss~~WyP~  112 (397)
T KOG4283|consen   44 GSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKH-----------KCIVAKQHENGHKYAISSAIWYPI  112 (397)
T ss_pred             CccceeeeccccceEEeecCCCccEEEEEeccccchhhccceehe-----------eeeccccCCccceeeeeeeEEeee
Confidence            334455555667888889999999999998765532221111100           00001112246888999999999 


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEcc---CCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCC
Q 047260          518 DGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRP---NSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSP  594 (784)
Q Consensus       518 dg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fsp---dg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~  594 (784)
                      |...+.+++.|.+++|||.++......|+ ..+.|..-+|+|   ...+||+|..|-.|++-|+.++. +..++.+|...
T Consensus       113 DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs-~sH~LsGHr~~  190 (397)
T KOG4283|consen  113 DTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGS-FSHTLSGHRDG  190 (397)
T ss_pred             cCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCc-ceeeeccccCc
Confidence            66689999999999999999998888874 677899999998   34577888888999999999987 78899999999


Q ss_pred             eEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeE---EEEEe
Q 047260          595 IMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQ---THSLQ  671 (784)
Q Consensus       595 V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~---i~~l~  671 (784)
                      |.++.|+|..++++++|+.||.|++||++..                           .|.+++.|..+++.   +..-.
T Consensus       191 vlaV~Wsp~~e~vLatgsaDg~irlWDiRra---------------------------sgcf~~lD~hn~k~~p~~~~n~  243 (397)
T KOG4283|consen  191 VLAVEWSPSSEWVLATGSADGAIRLWDIRRA---------------------------SGCFRVLDQHNTKRPPILKTNT  243 (397)
T ss_pred             eEEEEeccCceeEEEecCCCceEEEEEeecc---------------------------cceeEEeecccCccCccccccc
Confidence            9999999999999999999999999999742                           12333444433322   22234


Q ss_pred             CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEeCCCCceE-EEec--cCCC----ceEEEEEecCCCEEEEEECCCeEEEEE
Q 047260          672 GHAELVNYICWDTNGDYLASVS-QNLVKVWSMASGECI-QELS--SNGN----QFHSCVFHPSYSTLLVVGGISSLELWN  743 (784)
Q Consensus       672 ~h~~~V~sl~~spdg~~Lasgs-dd~I~IwDl~t~~~i-~~l~--~~~~----~I~sl~fspdg~~L~s~s~dg~I~Iwd  743 (784)
                      .|.+.|+.++|..++.++++++ ++.+++|+..+|+.. ..+-  .|..    .+. +. +-+...++..-.++.+.+++
T Consensus       244 ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~  321 (397)
T KOG4283|consen  244 AHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLN  321 (397)
T ss_pred             cccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEE
Confidence            5999999999999999999887 559999999887531 2111  1111    111 12 33444455555668899999


Q ss_pred             CCCCceE-EecccCCceEEEEEeCCCCEEEEEECCCcEEEe
Q 047260          744 MAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLW  783 (784)
Q Consensus       744 l~~~~~~-~~~~h~~~V~slafspdg~~LaSgs~DG~V~IW  783 (784)
                      +-++..+ .+..|-..|.|.++-|+=....++..|+.|..|
T Consensus       322 ~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w  362 (397)
T KOG4283|consen  322 LLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMW  362 (397)
T ss_pred             ccCceEEEeeecccceeeEEeecCchhhhhccccCCccccc
Confidence            9888877 667888889999999998889999999999888

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.86  E-value=2.3e-21  Score=216.00  Aligned_cols=234  Identities=16%  Similarity=0.322  Sum_probs=194.8

Q ss_pred             eEEEEEcC-CCCEEEEEeCCCeEEEEECCC---CceeeecCCCCCCeEEEEEcc-CCCEEEEEeCCCeEEEEcCCCCcce
Q 047260          510 VTCCHFSS-DGKLLASSGHDRKVVLWNMDT---LQTESTPEDHKSVVTDVRFRP-NSSQLATASVDKSVRLWDAANPNFC  584 (784)
Q Consensus       510 V~~l~fsp-dg~~Lasgs~Dg~I~IWd~~t---~~~~~~l~~h~~~It~i~fsp-dg~~Latgs~Dg~I~IWdl~~~~~~  584 (784)
                      +..+.|.. +.++|||++..|.|.+||+..   .+.+..|..|+..|+++.|++ ...+|++|+.||+|++||++..+ .
T Consensus        90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~-S  168 (839)
T KOG0269|consen   90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK-S  168 (839)
T ss_pred             hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccc-c
Confidence            55677775 567999999999999999986   566678899999999999999 56789999999999999999866 5


Q ss_pred             eeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC----eeEEeecCCeeEEEEecCCCEEEEEECCCcEEEEE
Q 047260          585 SQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPF----LCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFD  660 (784)
Q Consensus       585 ~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~----~~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwD  660 (784)
                      ..++.+....|..|.|+|...+.|+++.+.|.+.+||++..    ..+..+.+++.|+.|+|+..+|++|+.|+.|+|||
T Consensus       169 ~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd  248 (839)
T KOG0269|consen  169 KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWD  248 (839)
T ss_pred             cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEe
Confidence            66677788999999999999999999999999999999852    34556779999999999999999999999999999


Q ss_pred             CCCCe--EEEEEeCCCCCEEEEEEcCCCCE-EEEEe--CC-eEEEEeCCCC-ceEEEeccCCCceEEEEEec-CCCEEEE
Q 047260          661 IETDR--QTHSLQGHAELVNYICWDTNGDY-LASVS--QN-LVKVWSMASG-ECIQELSSNGNQFHSCVFHP-SYSTLLV  732 (784)
Q Consensus       661 l~t~~--~i~~l~~h~~~V~sl~~spdg~~-Lasgs--dd-~I~IwDl~t~-~~i~~l~~~~~~I~sl~fsp-dg~~L~s  732 (784)
                      +.+.+  ...++. ...+|.+|.|-|...+ |++++  .+ .|+|||++.. -+..++..|...++.++|.. |...+.+
T Consensus       249 ~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s  327 (839)
T KOG0269|consen  249 MTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWS  327 (839)
T ss_pred             ccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEe
Confidence            98654  344443 4568999999997664 66665  34 9999999865 56778899999999999975 4456888


Q ss_pred             EECCCeEEEEECC
Q 047260          733 VGGISSLELWNMA  745 (784)
Q Consensus       733 ~s~dg~I~Iwdl~  745 (784)
                      ++.||+|..-.++
T Consensus       328 ~sKD~tv~qh~~k  340 (839)
T KOG0269|consen  328 CSKDGTVLQHLFK  340 (839)
T ss_pred             ecCccHHHHhhhh
Confidence            8888876654433

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.86  E-value=4.5e-20  Score=195.48  Aligned_cols=288  Identities=19%  Similarity=0.279  Sum_probs=212.8

Q ss_pred             CcceeEEeEeecCCCceEEEEEcCCC--CEEEEEeCCCeEEEEECC----CCceeeecCCCCCCeEEEEEcc-CCCEEEE
Q 047260          494 GFTFCEVGCIRSRNSKVTCCHFSSDG--KLLASSGHDRKVVLWNMD----TLQTESTPEDHKSVVTDVRFRP-NSSQLAT  566 (784)
Q Consensus       494 ~~~~~~i~~l~~H~~~V~~l~fspdg--~~Lasgs~Dg~I~IWd~~----t~~~~~~l~~h~~~It~i~fsp-dg~~Lat  566 (784)
                      ...+.....++-|.++|+|++|+|..  +++|+|..-|.|-+||+.    ....+..+..|..+|.+|.|+| +...+++
T Consensus       173 l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~s  252 (498)
T KOG4328|consen  173 LDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYS  252 (498)
T ss_pred             cccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheee
Confidence            44556667778899999999999954  588999999999999995    2334566778999999999999 5678999


Q ss_pred             EeCCCeEEEEcCCCCcceeeecc--CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe----eEEeecCCeeEEEE
Q 047260          567 ASVDKSVRLWDAANPNFCSQAYT--GHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFL----CTHITKGGTAQVRF  640 (784)
Q Consensus       567 gs~Dg~I~IWdl~~~~~~~~~~~--~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~----~~~~~~~~v~~v~f  640 (784)
                      .|+||+|++-|++... ....+.  .....+..+.|+.+...++ .++.=|...+||+++..    .+..++..|+.+++
T Consensus       253 sSyDGtiR~~D~~~~i-~e~v~s~~~d~~~fs~~d~~~e~~~vl-~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~  330 (498)
T KOG4328|consen  253 SSYDGTIRLQDFEGNI-SEEVLSLDTDNIWFSSLDFSAESRSVL-FGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVAL  330 (498)
T ss_pred             eccCceeeeeeecchh-hHHHhhcCccceeeeeccccCCCccEE-EeecccceEEEEeecCCccchhhhhhhcccceeec
Confidence            9999999999998754 222222  2345567788887776444 55556699999998643    45566679999999


Q ss_pred             ecCCCE-EEEEECCCcEEEEECCCCe----EEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEeCC----CCceEEE
Q 047260          641 QPRIGQ-LLAAASDKVVSIFDIETDR----QTHSLQGHAELVNYICWDTNGDYLASVS-QNLVKVWSMA----SGECIQE  710 (784)
Q Consensus       641 sp~~~~-Ll~~s~Dg~I~IwDl~t~~----~i~~l~~h~~~V~sl~~spdg~~Lasgs-dd~I~IwDl~----t~~~i~~  710 (784)
                      +|...+ |++++.|++++|||++.-.    ++.....|...|.++.|+|.+-.|++.+ |+.|+|||..    ...+..+
T Consensus       331 NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~  410 (498)
T KOG4328|consen  331 NPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGT  410 (498)
T ss_pred             CCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccce
Confidence            998766 5667779999999998642    2334446999999999999766566655 6699999984    3344444


Q ss_pred             eccCC---C--ceEEEEEecCCCEEEEEECCCeEEEEECCCCceE-EecccCC-ceEE-EEEeCCCCEEEE-EECCCcEE
Q 047260          711 LSSNG---N--QFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM-TIAAHEN-IISA-LAQSPVTGMVAS-ASHDSSVK  781 (784)
Q Consensus       711 l~~~~---~--~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~-~V~s-lafspdg~~LaS-gs~DG~V~  781 (784)
                      +....   .  ......|.|+..+|+++..-..|-|||-..++.+ .+..... .|.+ ..|+|-+..+++ ++..|.|+
T Consensus       411 I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~  490 (498)
T KOG4328|consen  411 IPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIY  490 (498)
T ss_pred             eeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEE
Confidence            43221   1  2345689999999999999899999998888754 3333222 3443 478998884554 45688898


Q ss_pred             Ee
Q 047260          782 LW  783 (784)
Q Consensus       782 IW  783 (784)
                      ||
T Consensus       491 vf  492 (498)
T KOG4328|consen  491 VF  492 (498)
T ss_pred             EE
Confidence            88

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=5.8e-20  Score=194.70  Aligned_cols=279  Identities=13%  Similarity=0.242  Sum_probs=222.9

Q ss_pred             CcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCC
Q 047260          439 SLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSD  518 (784)
Q Consensus       439 ~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspd  518 (784)
                      .-+.++.|.+...-++ ++.+|+++++|-+....                        -..+..+.-...+|.+++|.|+
T Consensus       214 ~~I~sv~FHp~~plll-vaG~d~~lrifqvDGk~------------------------N~~lqS~~l~~fPi~~a~f~p~  268 (514)
T KOG2055|consen  214 GGITSVQFHPTAPLLL-VAGLDGTLRIFQVDGKV------------------------NPKLQSIHLEKFPIQKAEFAPN  268 (514)
T ss_pred             CCceEEEecCCCceEE-EecCCCcEEEEEecCcc------------------------ChhheeeeeccCccceeeecCC
Confidence            4456677777666666 56699999999773221                        1244555667788999999999


Q ss_pred             CC-EEEEEeCCCeEEEEECCCCceee--ecCCCC-CCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCC
Q 047260          519 GK-LLASSGHDRKVVLWNMDTLQTES--TPEDHK-SVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSP  594 (784)
Q Consensus       519 g~-~Lasgs~Dg~I~IWd~~t~~~~~--~l~~h~-~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~  594 (784)
                      |. .+++++.....+.||+.+.+...  .+.++. ..+.....++++++|+..+..|.|.+....++. .+..+. -.+.
T Consensus       269 G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~e-li~s~K-ieG~  346 (514)
T KOG2055|consen  269 GHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKE-LITSFK-IEGV  346 (514)
T ss_pred             CceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhh-hhheee-eccE
Confidence            99 89999999999999998866543  333444 457778899999999999999999999998866 333332 3578


Q ss_pred             eEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec--CC--eeEEEEecCCCEEEEEECCCcEEEEECCC------C
Q 047260          595 IMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK--GG--TAQVRFQPRIGQLLAAASDKVVSIFDIET------D  664 (784)
Q Consensus       595 V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~--~~--v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t------~  664 (784)
                      |..++|+.++..+++ ++.+|.|++||++...|++.+.  +.  .+.++.++++.+|++|+..|.|.|||..+      .
T Consensus       347 v~~~~fsSdsk~l~~-~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~P  425 (514)
T KOG2055|consen  347 VSDFTFSSDSKELLA-SGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNP  425 (514)
T ss_pred             EeeEEEecCCcEEEE-EcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCC
Confidence            999999999875555 5558899999999999888876  33  46778889999999999999999999654      4


Q ss_pred             eEEEEEeCCCCCEEEEEEcCCCCEEEEEe---CCeEEEEeCCCCceEEEeccC---CCceEEEEEecCCCEEEEEECCCe
Q 047260          665 RQTHSLQGHAELVNYICWDTNGDYLASVS---QNLVKVWSMASGECIQELSSN---GNQFHSCVFHPSYSTLLVVGGISS  738 (784)
Q Consensus       665 ~~i~~l~~h~~~V~sl~~spdg~~Lasgs---dd~I~IwDl~t~~~i~~l~~~---~~~I~sl~fspdg~~L~s~s~dg~  738 (784)
                      +++..+..-...|+++.|++|..+|+.++   .+.+++..+.+......+...   -+.|+|++|+|.+.++++|..+|.
T Consensus       426 kPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~gr  505 (514)
T KOG2055|consen  426 KPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGR  505 (514)
T ss_pred             CchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCc
Confidence            67777777778999999999999999988   348999999887766666543   345899999999999999999999


Q ss_pred             EEEEECC
Q 047260          739 LELWNMA  745 (784)
Q Consensus       739 I~Iwdl~  745 (784)
                      |.+|.+.
T Consensus       506 v~l~kL~  512 (514)
T KOG2055|consen  506 VHLFKLH  512 (514)
T ss_pred             eeeEeec
Confidence            9999874

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.85  E-value=5.5e-20  Score=190.61  Aligned_cols=238  Identities=18%  Similarity=0.362  Sum_probs=185.4

Q ss_pred             ecCCCceEEEEEcCCC--CEEEEEeCCCeEEEEECCC----------------CceeeecCCCCCCeEEEEEcc-CCCEE
Q 047260          504 RSRNSKVTCCHFSSDG--KLLASSGHDRKVVLWNMDT----------------LQTESTPEDHKSVVTDVRFRP-NSSQL  564 (784)
Q Consensus       504 ~~H~~~V~~l~fspdg--~~Lasgs~Dg~I~IWd~~t----------------~~~~~~l~~h~~~It~i~fsp-dg~~L  564 (784)
                      -.|.+.|+.+.-++-+  .+.|+=+..|.|.||++..                .+++.++.+|...=..|+|+| ....|
T Consensus       148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L  227 (440)
T KOG0302|consen  148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL  227 (440)
T ss_pred             cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence            4588888888888754  4566667889999999852                467778889999999999999 33358


Q ss_pred             EEEeCCCeEEEEcCCCCccee--eeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC-----eeEEeecCCeeE
Q 047260          565 ATASVDKSVRLWDAANPNFCS--QAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPF-----LCTHITKGGTAQ  637 (784)
Q Consensus       565 atgs~Dg~I~IWdl~~~~~~~--~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~-----~~~~~~~~~v~~  637 (784)
                      ++|..-+.|++|...++....  ..+.+|+..|..++|+|....+|++|+.||.|+|||++..     .+...+.+.|+.
T Consensus       228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNV  307 (440)
T KOG0302|consen  228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNV  307 (440)
T ss_pred             ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceee
Confidence            888888899999998866432  4567899999999999999999999999999999999975     233556688999


Q ss_pred             EEEecCCCEEEEEECCCcEEEEECCC---CeEEEEEeCCCCCEEEEEEcCCC--CEEEEEeCCeEEEEeCCCCce-----
Q 047260          638 VRFQPRIGQLLAAASDKVVSIFDIET---DRQTHSLQGHAELVNYICWDTNG--DYLASVSQNLVKVWSMASGEC-----  707 (784)
Q Consensus       638 v~fsp~~~~Ll~~s~Dg~I~IwDl~t---~~~i~~l~~h~~~V~sl~~spdg--~~Lasgsdd~I~IwDl~t~~~-----  707 (784)
                      |.|+.....|++|+.||+++|||++.   ++++..|+-|..+|++|.|+|..  .+.++|.|+.|.|||+.-..-     
T Consensus       308 ISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~  387 (440)
T KOG0302|consen  308 ISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEID  387 (440)
T ss_pred             EEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhc
Confidence            99999999899999999999999986   46888999999999999999843  344455566999999864211     


Q ss_pred             ---EE--------EeccC--CCceEEEEEecCCC-EEEEEECCCeEEEE
Q 047260          708 ---IQ--------ELSSN--GNQFHSCVFHPSYS-TLLVVGGISSLELW  742 (784)
Q Consensus       708 ---i~--------~l~~~--~~~I~sl~fspdg~-~L~s~s~dg~I~Iw  742 (784)
                         ..        -+..|  ...+..+.|++.-+ +|++.+.|| +.||
T Consensus       388 ~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf  435 (440)
T KOG0302|consen  388 QEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF  435 (440)
T ss_pred             cccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence               00        11112  35577888988654 556666666 4444

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=3e-19  Score=181.45  Aligned_cols=238  Identities=19%  Similarity=0.278  Sum_probs=181.8

Q ss_pred             eecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcc----eeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEE
Q 047260          543 STPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNF----CSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQ  618 (784)
Q Consensus       543 ~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~----~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~  618 (784)
                      ..+++|.+.|++++|+.||++|+|++.|++|+||++++-..    +++... .-+..+.+.|.||-..+++++-....++
T Consensus        80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv-e~dhpT~V~FapDc~s~vv~~~~g~~l~  158 (420)
T KOG2096|consen   80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV-EYDHPTRVVFAPDCKSVVVSVKRGNKLC  158 (420)
T ss_pred             hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc-cCCCceEEEECCCcceEEEEEccCCEEE
Confidence            35679999999999999999999999999999999986331    111111 1235788999999999999999999999


Q ss_pred             EEeCCCC---------------eeEEeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEc
Q 047260          619 YWSINPF---------------LCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWD  683 (784)
Q Consensus       619 iwDl~~~---------------~~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~s  683 (784)
                      +|.+...               .....+...+..+-....+.+|.+++.|..|.+||++ |+.+..+......-+..+.+
T Consensus       159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavS  237 (420)
T KOG2096|consen  159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVS  237 (420)
T ss_pred             EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeC
Confidence            9977421               1111222345556666777889999999999999999 88888887766777788999


Q ss_pred             CCCCEEEEEeCC-eEEEEeCC---CC-----ceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCc------
Q 047260          684 TNGDYLASVSQN-LVKVWSMA---SG-----ECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENK------  748 (784)
Q Consensus       684 pdg~~Lasgsdd-~I~IwDl~---t~-----~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~------  748 (784)
                      |+|++|++++-- .|+||.+-   .|     ..+..+++|...|..++|+++...+++++.||+++|||++-.-      
T Consensus       238 P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDp  317 (420)
T KOG2096|consen  238 PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDP  317 (420)
T ss_pred             CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCc
Confidence            999999998844 89999873   33     3467888999999999999999999999999999999976321      


Q ss_pred             -eE-----EecccCCceEEEEEeCCCCEEEEEECCCcEEEe
Q 047260          749 -SM-----TIAAHENIISALAQSPVTGMVASASHDSSVKLW  783 (784)
Q Consensus       749 -~~-----~~~~h~~~V~slafspdg~~LaSgs~DG~V~IW  783 (784)
                       .+     .+....+....++.+|.+..|+.+.. ..+++|
T Consensus       318 k~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g-s~l~~~  357 (420)
T KOG2096|consen  318 KILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG-SDLKVF  357 (420)
T ss_pred             hHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC-CceEEE
Confidence             11     12222334458999999998886532 234443

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=1.1e-20  Score=219.10  Aligned_cols=272  Identities=17%  Similarity=0.327  Sum_probs=214.4

Q ss_pred             EEEEEcCCCC-EEEEE----------eCCCeEEEEECCCC------ceeeecCCCCCCeEEEEEccCCCE----EEEEeC
Q 047260          511 TCCHFSSDGK-LLASS----------GHDRKVVLWNMDTL------QTESTPEDHKSVVTDVRFRPNSSQ----LATASV  569 (784)
Q Consensus       511 ~~l~fspdg~-~Lasg----------s~Dg~I~IWd~~t~------~~~~~l~~h~~~It~i~fspdg~~----Latgs~  569 (784)
                      -.++|+|++. ++|+|          +.+.++-||.+...      +.+..+ ......+.++|.+.+..    |+.|..
T Consensus        10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~-~s~~rF~kL~W~~~g~~~~GlIaGG~e   88 (1049)
T KOG0307|consen   10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSL-QSSNRFNKLAWGSYGSHSHGLIAGGLE   88 (1049)
T ss_pred             ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccc-cccccceeeeecccCCCccceeecccc
Confidence            3468999887 56654          23556667765422      222222 23456789999996655    899999


Q ss_pred             CCeEEEEcCCCC-----cceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEe-----ecCCeeEEE
Q 047260          570 DKSVRLWDAANP-----NFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHI-----TKGGTAQVR  639 (784)
Q Consensus       570 Dg~I~IWdl~~~-----~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~-----~~~~v~~v~  639 (784)
                      ||.|.+||...-     ...+..+..|.+.|..++|++...+++++|+.||.|.|||++..+.-..     ..+.|.+++
T Consensus        89 dG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~ls  168 (1049)
T KOG0307|consen   89 DGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLS  168 (1049)
T ss_pred             CCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEec
Confidence            999999998652     2345667789999999999999999999999999999999986443322     346789999


Q ss_pred             EecCCCEEEE-EECCCcEEEEECCCCeEEEEEeCCCC--CEEEEEEcCCCC-EEEEEe-CC---eEEEEeCCCC-ceEEE
Q 047260          640 FQPRIGQLLA-AASDKVVSIFDIETDRQTHSLQGHAE--LVNYICWDTNGD-YLASVS-QN---LVKVWSMASG-ECIQE  710 (784)
Q Consensus       640 fsp~~~~Ll~-~s~Dg~I~IwDl~t~~~i~~l~~h~~--~V~sl~~spdg~-~Lasgs-dd---~I~IwDl~t~-~~i~~  710 (784)
                      |+..-.++++ ++.+|.+.|||++..+.+..+..+..  .+..+.|+|++. .|++++ |+   .|.+||+|.- ..+++
T Consensus       169 WNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~  248 (1049)
T KOG0307|consen  169 WNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKI  248 (1049)
T ss_pred             cchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhh
Confidence            9887766554 55578999999999988888876554  577899999864 444444 33   8999999864 67888


Q ss_pred             eccCCCceEEEEEecCC-CEEEEEECCCeEEEEECCCCceE-EecccCCceEEEEEeCCCC-EEEEEECCCcEEEe
Q 047260          711 LSSNGNQFHSCVFHPSY-STLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTG-MVASASHDSSVKLW  783 (784)
Q Consensus       711 l~~~~~~I~sl~fspdg-~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg~-~LaSgs~DG~V~IW  783 (784)
                      +.+|...|.++.|++.+ .++++++.|+.|.+|+.++++.+ .+......+..+.|+|... +|+.++-||.|-||
T Consensus       249 ~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~  324 (1049)
T KOG0307|consen  249 LEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIY  324 (1049)
T ss_pred             hcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeee
Confidence            89999999999999977 78999999999999999999988 6666778899999999876 88888999999887

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=1.9e-19  Score=177.36  Aligned_cols=245  Identities=21%  Similarity=0.308  Sum_probs=189.9

Q ss_pred             CceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcC--CCCEEEEEeCC
Q 047260          451 DRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSS--DGKLLASSGHD  528 (784)
Q Consensus       451 ~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fsp--dg~~Lasgs~D  528 (784)
                      ...++++|.|++|++|....+.                       ....+.+|++|.++|+.++|..  -|.+||+++.|
T Consensus        23 gkrlATcsSD~tVkIf~v~~n~-----------------------~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYD   79 (299)
T KOG1332|consen   23 GKRLATCSSDGTVKIFEVRNNG-----------------------QSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYD   79 (299)
T ss_pred             cceeeeecCCccEEEEEEcCCC-----------------------CceeeeEecCCCCCeeEEeecccccCcEeeEeecC
Confidence            3445678899999999875544                       1245778999999999999977  89999999999


Q ss_pred             CeEEEEECCCCc--eeeecCCCCCCeEEEEEcc--CCCEEEEEeCCCeEEEEcCCCCc--ceeeeccCCCCCeEEEEEcC
Q 047260          529 RKVVLWNMDTLQ--TESTPEDHKSVVTDVRFRP--NSSQLATASVDKSVRLWDAANPN--FCSQAYTGHSSPIMSLDFHP  602 (784)
Q Consensus       529 g~I~IWd~~t~~--~~~~l~~h~~~It~i~fsp--dg~~Latgs~Dg~I~IWdl~~~~--~~~~~~~~h~~~V~sl~~sp  602 (784)
                      |+|.||.-+.++  .......|...|++|+|.|  -|-.|++++.||.|.|.++++..  ...++...|.-.|.+++|.|
T Consensus        80 gkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswap  159 (299)
T KOG1332|consen   80 GKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAP  159 (299)
T ss_pred             ceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecC
Confidence            999999988764  3345568999999999999  46789999999999999987652  24456678999999999998


Q ss_pred             CCCc--EEEEEeCCCeEEEEeCCCCeeEEeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCC--eEEEEEeCCCCCEE
Q 047260          603 KKTD--LFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETD--RQTHSLQGHAELVN  678 (784)
Q Consensus       603 ~~~~--ll~sgs~dg~I~iwDl~~~~~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~--~~i~~l~~h~~~V~  678 (784)
                      ....  ++-.+.                            ...-..|++|+.|..|+||+...+  +..+.+.+|.+.|+
T Consensus       160 a~~~g~~~~~~~----------------------------~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVR  211 (299)
T KOG1332|consen  160 ASAPGSLVDQGP----------------------------AAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVR  211 (299)
T ss_pred             cCCCccccccCc----------------------------ccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhh
Confidence            6210  110000                            001256899999999999998875  34456889999999


Q ss_pred             EEEEcCCC----CEEEEEeCC-eEEEEeCCCC--c-eEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCC
Q 047260          679 YICWDTNG----DYLASVSQN-LVKVWSMASG--E-CIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAE  746 (784)
Q Consensus       679 sl~~spdg----~~Lasgsdd-~I~IwDl~t~--~-~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~  746 (784)
                      .++|.|.-    .+|++++.| +|.||..+..  . ....+......+..+.|+..|+.|++++.|+.|.+|.-..
T Consensus       212 DVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~  287 (299)
T KOG1332|consen  212 DVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV  287 (299)
T ss_pred             hhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence            99999964    478999966 9999987632  1 1222233457799999999999999999999999997543

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.84  E-value=1.8e-19  Score=197.31  Aligned_cols=279  Identities=14%  Similarity=0.211  Sum_probs=205.0

Q ss_pred             cCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCCCEEEEEeC
Q 047260          448 EDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGH  527 (784)
Q Consensus       448 ~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~  527 (784)
                      +..+.+++++-.||.|.+++...-...                    ..-+.+.....|.+.|..+.|-|....|++++.
T Consensus        61 ~n~eHiLavadE~G~i~l~dt~~~~fr--------------------~ee~~lk~~~aH~nAifDl~wapge~~lVsasG  120 (720)
T KOG0321|consen   61 PNKEHILAVADEDGGIILFDTKSIVFR--------------------LEERQLKKPLAHKNAIFDLKWAPGESLLVSASG  120 (720)
T ss_pred             CCccceEEEecCCCceeeecchhhhcc--------------------hhhhhhcccccccceeEeeccCCCceeEEEccC
Confidence            456677788888888888866322100                    111233455679999999999996668999999


Q ss_pred             CCeEEEEECCCCceeee--cCCCCCCeEEEEEcc-CCCEEEEEeCCCeEEEEcCCCCcc------eeee-----------
Q 047260          528 DRKVVLWNMDTLQTEST--PEDHKSVVTDVRFRP-NSSQLATASVDKSVRLWDAANPNF------CSQA-----------  587 (784)
Q Consensus       528 Dg~I~IWd~~t~~~~~~--l~~h~~~It~i~fsp-dg~~Latgs~Dg~I~IWdl~~~~~------~~~~-----------  587 (784)
                      |.++++||++..+++..  +.+|...|.+++|.+ +...|++|+.||.|.|||++....      +...           
T Consensus       121 DsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptps  200 (720)
T KOG0321|consen  121 DSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPS  200 (720)
T ss_pred             CceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCC
Confidence            99999999999888776  889999999999999 566889999999999999874320      0011           


Q ss_pred             ---------ccCCCCCeEE---EEEcCCCCcEEEEEeC-CCeEEEEeCCCCeeEEee--------------cCCeeEEEE
Q 047260          588 ---------YTGHSSPIMS---LDFHPKKTDLFCFCDN-DNEIQYWSINPFLCTHIT--------------KGGTAQVRF  640 (784)
Q Consensus       588 ---------~~~h~~~V~s---l~~sp~~~~ll~sgs~-dg~I~iwDl~~~~~~~~~--------------~~~v~~v~f  640 (784)
                               ...+...|.+   +.+..|+. .|++++. |+.|+|||++...+....              ..++.++..
T Consensus       201 kp~~kr~~k~kA~s~ti~ssvTvv~fkDe~-tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~l  279 (720)
T KOG0321|consen  201 KPLKKRIRKWKAASNTIFSSVTVVLFKDES-TLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLIL  279 (720)
T ss_pred             chhhccccccccccCceeeeeEEEEEeccc-eeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEe
Confidence                     1123333444   44444555 5555555 999999999864332211              135677888


Q ss_pred             ecCCCEEEEEECCCcEEEEECCCC--eEEEEEeCCCC--CEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCc-eEEEeccC
Q 047260          641 QPRIGQLLAAASDKVVSIFDIETD--RQTHSLQGHAE--LVNYICWDTNGDYLASVSQN-LVKVWSMASGE-CIQELSSN  714 (784)
Q Consensus       641 sp~~~~Ll~~s~Dg~I~IwDl~t~--~~i~~l~~h~~--~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~-~i~~l~~~  714 (784)
                      ...|.+|++.|.|+.|+.|++...  .++..+.++..  ....-+.+|++.+|++++.+ ..++|.+.+.+ ....+.+|
T Consensus       280 DssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Gh  359 (720)
T KOG0321|consen  280 DSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGH  359 (720)
T ss_pred             cCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCc
Confidence            888999999999999999999864  34444444332  12233568999999999966 99999998764 45667789


Q ss_pred             CCceEEEEEecCC-CEEEEEECCCeEEEEECCCC
Q 047260          715 GNQFHSCVFHPSY-STLLVVGGISSLELWNMAEN  747 (784)
Q Consensus       715 ~~~I~sl~fspdg-~~L~s~s~dg~I~Iwdl~~~  747 (784)
                      .-.|++++|.|.. .-+++++.|-.++||++..+
T Consensus       360 t~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  360 TREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             ceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence            9999999998754 33788899999999999654

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.84  E-value=2.6e-19  Score=190.51  Aligned_cols=256  Identities=15%  Similarity=0.218  Sum_probs=199.3

Q ss_pred             eEEEEEcCCCC-EEEEEeCCCeEEEEECCCC--ceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceee
Q 047260          510 VTCCHFSSDGK-LLASSGHDRKVVLWNMDTL--QTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQ  586 (784)
Q Consensus       510 V~~l~fspdg~-~Lasgs~Dg~I~IWd~~t~--~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~  586 (784)
                      |.+++|+.... .+++.+.|..|++|.-...  +....-+.....-.|++......|+++|+..++|+|||++. +.+.+
T Consensus        37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~-kl~hr  115 (673)
T KOG4378|consen   37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRA-KLIHR  115 (673)
T ss_pred             ceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHH-HHHhh
Confidence            88999987653 2334456888999975532  12211112222445555555568999999999999999995 56888


Q ss_pred             eccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecC----CeeEEEEecCCCEEE-EEECCCcEEEEEC
Q 047260          587 AYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKG----GTAQVRFQPRIGQLL-AAASDKVVSIFDI  661 (784)
Q Consensus       587 ~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~----~v~~v~fsp~~~~Ll-~~s~Dg~I~IwDl  661 (784)
                      .+.+|.+.|+++.++..+. +|++++..|.|.|..+.+......+..    .+.-+.|++..++++ +++.+|.|.+||+
T Consensus       116 ~lkdh~stvt~v~YN~~De-yiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv  194 (673)
T KOG4378|consen  116 FLKDHQSTVTYVDYNNTDE-YIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDV  194 (673)
T ss_pred             hccCCcceeEEEEecCCcc-eeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEec
Confidence            8999999999999997765 788999999999999988766555542    345788999887765 4566899999999


Q ss_pred             CCCeEEEEE-eCCCCCEEEEEEcCCCC-EEEEEe-CCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCe
Q 047260          662 ETDRQTHSL-QGHAELVNYICWDTNGD-YLASVS-QNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISS  738 (784)
Q Consensus       662 ~t~~~i~~l-~~h~~~V~sl~~spdg~-~Lasgs-dd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~  738 (784)
                      ....++..+ +.|..+...|||+|... +|++.+ |..|.+||++..+....+. ...+...++|.++|.+|++|...|.
T Consensus       195 ~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~  273 (673)
T KOG4378|consen  195 QGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGE  273 (673)
T ss_pred             cCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecCCce
Confidence            988777665 45999999999999665 556655 5599999999877666664 3467899999999999999999999


Q ss_pred             EEEEECCCCceE--EecccCCceEEEEEeCCC
Q 047260          739 LELWNMAENKSM--TIAAHENIISALAQSPVT  768 (784)
Q Consensus       739 I~Iwdl~~~~~~--~~~~h~~~V~slafspdg  768 (784)
                      |..||++..+..  .+..|...|++|+|-+..
T Consensus       274 ~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  274 LIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             EEEEecccCCCCceEeeecccceeEEEeeecc
Confidence            999999876543  677999999999998864

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=2.9e-19  Score=181.36  Aligned_cols=274  Identities=15%  Similarity=0.256  Sum_probs=205.5

Q ss_pred             ccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCCCEE
Q 047260          443 ASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLL  522 (784)
Q Consensus       443 s~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~~L  522 (784)
                      ...|+.. ..++++|..||.|.+|+...-                          ..-+.+.+|..+|+|++||+||+.|
T Consensus        28 ~~~Fs~~-G~~lAvGc~nG~vvI~D~~T~--------------------------~iar~lsaH~~pi~sl~WS~dgr~L   80 (405)
T KOG1273|consen   28 CCQFSRW-GDYLAVGCANGRVVIYDFDTF--------------------------RIARMLSAHVRPITSLCWSRDGRKL   80 (405)
T ss_pred             eEEeccC-cceeeeeccCCcEEEEEcccc--------------------------chhhhhhccccceeEEEecCCCCEe
Confidence            3445443 445668999999999977322                          2334567899999999999999999


Q ss_pred             EEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCC-CEEEEEeCCCeEEEEcCCCCcceeeecc--C-CCCCeEEE
Q 047260          523 ASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNS-SQLATASVDKSVRLWDAANPNFCSQAYT--G-HSSPIMSL  598 (784)
Q Consensus       523 asgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg-~~Latgs~Dg~I~IWdl~~~~~~~~~~~--~-h~~~V~sl  598 (784)
                      +|++.|..|.+||+..+.++..+. ...+|+.+.|+|.. +.++++-.+..-.+-++..+........  + ......+.
T Consensus        81 ltsS~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~  159 (405)
T KOG1273|consen   81 LTSSRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHG  159 (405)
T ss_pred             eeecCCceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccc
Confidence            999999999999999999988884 77899999999943 3344443444455555554331111111  1 11122334


Q ss_pred             EEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec----CCeeEEEEecCCCEEEEEECCCcEEEEECCCC-------e--
Q 047260          599 DFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK----GGTAQVRFQPRIGQLLAAASDKVVSIFDIETD-------R--  665 (784)
Q Consensus       599 ~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~----~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~-------~--  665 (784)
                      .|.+.|+ ++++|...|.+.++|..+.+++..++    ..+..+.++..+..|+.-+.|..|+.|+++.-       +  
T Consensus       160 ~fdr~g~-yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e  238 (405)
T KOG1273|consen  160 VFDRRGK-YIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVE  238 (405)
T ss_pred             cccCCCC-EEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcC
Confidence            5777776 77889999999999999999987776    45677889999999999999999999998631       1  


Q ss_pred             EEEEEeC--CCCCEEEEEEcCCCCEEEEEeCC--eEEEEeCCCCceEEEeccCC-CceEEEEEecCCCEEEEEECCCeEE
Q 047260          666 QTHSLQG--HAELVNYICWDTNGDYLASVSQN--LVKVWSMASGECIQELSSNG-NQFHSCVFHPSYSTLLVVGGISSLE  740 (784)
Q Consensus       666 ~i~~l~~--h~~~V~sl~~spdg~~Lasgsdd--~I~IwDl~t~~~i~~l~~~~-~~I~sl~fspdg~~L~s~s~dg~I~  740 (784)
                      +.+.+..  ....-.+++|+.+|.|+++++..  .++||.-..|.+++.+.+.. .....+.|+|-...|++. ..|.|+
T Consensus       239 ~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~  317 (405)
T KOG1273|consen  239 PEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVY  317 (405)
T ss_pred             hhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceE
Confidence            1122211  23455789999999999999855  89999999999999998876 567889999998877777 778999


Q ss_pred             EEECCC
Q 047260          741 LWNMAE  746 (784)
Q Consensus       741 Iwdl~~  746 (784)
                      ||....
T Consensus       318 iw~~~~  323 (405)
T KOG1273|consen  318 IWAVVQ  323 (405)
T ss_pred             EEEeec
Confidence            998654

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.83  E-value=6e-17  Score=176.89  Aligned_cols=283  Identities=26%  Similarity=0.467  Sum_probs=227.1

Q ss_pred             eeEEeEeecCCCceEEEEEcCCCCEEEEEeC-CCeEEEEECCCCceeeecCCCCCCeEEEEEccCCC-EEEEEeCCCeEE
Q 047260          497 FCEVGCIRSRNSKVTCCHFSSDGKLLASSGH-DRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSS-QLATASVDKSVR  574 (784)
Q Consensus       497 ~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~-Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~-~Latgs~Dg~I~  574 (784)
                      ......+..|...|.+++|+|++.++++++. |+.+++|++.....+..+..|...|.+++|+|++. .+++++.|+.|+
T Consensus       145 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~  224 (466)
T COG2319         145 GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIR  224 (466)
T ss_pred             CeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEE
Confidence            3566778889999999999999998888885 99999999999889999999999999999999988 555559999999


Q ss_pred             EEcCCCCcceee-eccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCee-EEee---cCCeeEEEEecCCCEEEE
Q 047260          575 LWDAANPNFCSQ-AYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLC-THIT---KGGTAQVRFQPRIGQLLA  649 (784)
Q Consensus       575 IWdl~~~~~~~~-~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~-~~~~---~~~v~~v~fsp~~~~Ll~  649 (784)
                      +||...+. ... .+.+|...+ ...|++++ .++++++.|+.+++|++..... ....   ...+.++.|.|++..+++
T Consensus       225 ~wd~~~~~-~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  301 (466)
T COG2319         225 LWDLSTGK-LLRSTLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLAS  301 (466)
T ss_pred             EEECCCCc-EEeeecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEE
Confidence            99888555 444 677887775 44899998 4677899999999999986543 3333   577888999998888888


Q ss_pred             EECCCcEEEEECCCCeEEEEEe--CCCCCEEEEEEcCCCCEEEEE-e-CCeEEEEeCCCCceEEEeccCCCceEEEEEec
Q 047260          650 AASDKVVSIFDIETDRQTHSLQ--GHAELVNYICWDTNGDYLASV-S-QNLVKVWSMASGECIQELSSNGNQFHSCVFHP  725 (784)
Q Consensus       650 ~s~Dg~I~IwDl~t~~~i~~l~--~h~~~V~sl~~spdg~~Lasg-s-dd~I~IwDl~t~~~i~~l~~~~~~I~sl~fsp  725 (784)
                      ++.|+.+.+||..+........  .|...+..+.|.+++..++.+ . ++.+.+|++............ ..+..+.+.+
T Consensus       302 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  380 (466)
T COG2319         302 GSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSP  380 (466)
T ss_pred             eeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCC-ceEEEEEECC
Confidence            8889889999999887776665  788889999994332555555 3 448888999887733333332 2278888888


Q ss_pred             CCCEEEE-EECCCeEEEEECCCCceEEecccC-CceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          726 SYSTLLV-VGGISSLELWNMAENKSMTIAAHE-NIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       726 dg~~L~s-~s~dg~I~Iwdl~~~~~~~~~~h~-~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                       ...++. +..++.+.+|+............. ..+....+++++..+++++.++.+++|+
T Consensus       381 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (466)
T COG2319         381 -DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWD  440 (466)
T ss_pred             -CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEe
Confidence             533444 577899999999998887555544 8899999999999999999999999996

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.83  E-value=2.9e-19  Score=188.93  Aligned_cols=232  Identities=20%  Similarity=0.382  Sum_probs=182.9

Q ss_pred             CCCEEEEEeCCCeEEEEECCCC---cee------------------eecCCCCCCeEEEEEccC-CCEEEEEeCCCeEEE
Q 047260          518 DGKLLASSGHDRKVVLWNMDTL---QTE------------------STPEDHKSVVTDVRFRPN-SSQLATASVDKSVRL  575 (784)
Q Consensus       518 dg~~Lasgs~Dg~I~IWd~~t~---~~~------------------~~l~~h~~~It~i~fspd-g~~Latgs~Dg~I~I  575 (784)
                      .|+|+|.|+.|..|.|||+.-.   .+.                  ..-.+|+..|.+++|+.. .+.||+||.|.+|++
T Consensus       191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l  270 (463)
T KOG0270|consen  191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL  270 (463)
T ss_pred             CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence            3679999999999999998621   010                  112369999999999884 568999999999999


Q ss_pred             EcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCC---CeeEEeecCCeeEEEEecCCCE-EEEEE
Q 047260          576 WDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINP---FLCTHITKGGTAQVRFQPRIGQ-LLAAA  651 (784)
Q Consensus       576 Wdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~---~~~~~~~~~~v~~v~fsp~~~~-Ll~~s  651 (784)
                      ||+.+++ +..++..|.+.|.++.|+|....++++|+.|++|.+.|.+.   ......+.+.|..++|.|.... +++++
T Consensus       271 WD~~~g~-p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~t  349 (463)
T KOG0270|consen  271 WDVDTGK-PKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVST  349 (463)
T ss_pred             EEcCCCC-cceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEec
Confidence            9999987 77888889999999999999999999999999999999993   4445667799999999998765 55556


Q ss_pred             CCCcEEEEECCCC-eEEEEEeCCCCCEEEEEEcCCC-CEEEEEeCC-eEEEEeCCCCce--EEEeccCCCceEEEEEecC
Q 047260          652 SDKVVSIFDIETD-RQTHSLQGHAELVNYICWDTNG-DYLASVSQN-LVKVWSMASGEC--IQELSSNGNQFHSCVFHPS  726 (784)
Q Consensus       652 ~Dg~I~IwDl~t~-~~i~~l~~h~~~V~sl~~spdg-~~Lasgsdd-~I~IwDl~t~~~--i~~l~~~~~~I~sl~fspd  726 (784)
                      .||+|+-+|+|.. +++.+++.|.+.|.+|++++.- .++++++.+ .|++|++.....  +..-.-.-+...|.++.|+
T Consensus       350 ddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~  429 (463)
T KOG0270|consen  350 DDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPD  429 (463)
T ss_pred             CCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCC
Confidence            6899999999986 9999999999999999998754 456666644 999999875432  2222222234677788888


Q ss_pred             CCEE-EEEECCCeEEEEECCCCceE
Q 047260          727 YSTL-LVVGGISSLELWNMAENKSM  750 (784)
Q Consensus       727 g~~L-~s~s~dg~I~Iwdl~~~~~~  750 (784)
                      -.++ ++|+..+.++|||+.+...+
T Consensus       430 ~a~~la~GG~k~~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  430 VAFTLAFGGEKAVLRVWDIFTNSPV  454 (463)
T ss_pred             cceEEEecCccceEEEeecccChhH
Confidence            7664 45555567999999877544

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.83  E-value=3.1e-19  Score=189.16  Aligned_cols=284  Identities=15%  Similarity=0.190  Sum_probs=219.3

Q ss_pred             CcccccccccCCC-ceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcC
Q 047260          439 SLASASNLLEDID-RFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSS  517 (784)
Q Consensus       439 ~~~ss~~~~~~~~-~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fsp  517 (784)
                      ..+.+..|.+... .++++|...|.|.+|+....                      ......+..+..|..+|.++.|+|
T Consensus       187 ~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~----------------------~~d~d~v~~f~~hs~~Vs~l~F~P  244 (498)
T KOG4328|consen  187 RRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQ----------------------EKDKDGVYLFTPHSGPVSGLKFSP  244 (498)
T ss_pred             cceEEEEecccCcceEEEEccCCCcEEEEecCCC----------------------CCccCceEEeccCCccccceEecC
Confidence            3456677777766 88999999999999988311                      011123456778999999999999


Q ss_pred             -CCCEEEEEeCCCeEEEEECCCCceeeec--CCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCC
Q 047260          518 -DGKLLASSGHDRKVVLWNMDTLQTESTP--EDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSP  594 (784)
Q Consensus       518 -dg~~Lasgs~Dg~I~IWd~~t~~~~~~l--~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~  594 (784)
                       +...+++.+.||+|++-|+++......+  ......+..+.|+.+...++++..=|...+||+++++.....+.-|...
T Consensus       245 ~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kK  324 (498)
T KOG4328|consen  245 ANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKK  324 (498)
T ss_pred             CChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcc
Confidence             4558889999999999999875443333  3355667888898888888888877899999999988667777788899


Q ss_pred             eEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCee-------EEeecCCeeEEEEecCCCEEEEEECCCcEEEEECC----C
Q 047260          595 IMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLC-------THITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIE----T  663 (784)
Q Consensus       595 V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~-------~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~----t  663 (784)
                      |.+|+++|-.++++++++.|++++|||++....       ...+...|.+..|+|.+..|++.+.|..|+|||..    .
T Consensus       325 I~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~  404 (498)
T KOG4328|consen  325 ITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAK  404 (498)
T ss_pred             cceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeeccccccc
Confidence            999999999999999999999999999985322       22345778999999999999999999999999983    3


Q ss_pred             CeEEEEEeCCCC------CEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCC-ceEEE-EEecCCCEEEEEE
Q 047260          664 DRQTHSLQGHAE------LVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGN-QFHSC-VFHPSYSTLLVVG  734 (784)
Q Consensus       664 ~~~i~~l~~h~~------~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~-~I~sl-~fspdg~~L~s~s  734 (784)
                      ..+...+. |..      ......|.|+..+|+++.-- .|-|+|-..++.+.++..... .|.++ .|+|-+..+++|+
T Consensus       405 ~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~  483 (498)
T KOG4328|consen  405 DEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGG  483 (498)
T ss_pred             CCccceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccC
Confidence            33444443 322      23446899999999998854 899999999998888765443 45444 7999988666666


Q ss_pred             C-CCeEEEEECC
Q 047260          735 G-ISSLELWNMA  745 (784)
Q Consensus       735 ~-dg~I~Iwdl~  745 (784)
                      . .|.|+||.-+
T Consensus       484 ~s~Gki~vft~k  495 (498)
T KOG4328|consen  484 NSSGKIYVFTNK  495 (498)
T ss_pred             CccceEEEEecC
Confidence            5 4789988654

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=5.6e-20  Score=213.36  Aligned_cols=243  Identities=18%  Similarity=0.312  Sum_probs=200.4

Q ss_pred             CCCceEEEEEcCCCCE----EEEEeCCCeEEEEECCC------CceeeecCCCCCCeEEEEEccCC-CEEEEEeCCCeEE
Q 047260          506 RNSKVTCCHFSSDGKL----LASSGHDRKVVLWNMDT------LQTESTPEDHKSVVTDVRFRPNS-SQLATASVDKSVR  574 (784)
Q Consensus       506 H~~~V~~l~fspdg~~----Lasgs~Dg~I~IWd~~t------~~~~~~l~~h~~~It~i~fspdg-~~Latgs~Dg~I~  574 (784)
                      ...+.++++|.+.|..    ||.|.+||.|.+||...      ...+.++..|++.|..+.|++.. ++||+|+.||.|.
T Consensus        63 s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~  142 (1049)
T KOG0307|consen   63 SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEIL  142 (1049)
T ss_pred             ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEE
Confidence            3456788999987665    89999999999999875      23456677899999999999955 5999999999999


Q ss_pred             EEcCCCCcceeee-ccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec-----CCeeEEEEecCCCE-E
Q 047260          575 LWDAANPNFCSQA-YTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK-----GGTAQVRFQPRIGQ-L  647 (784)
Q Consensus       575 IWdl~~~~~~~~~-~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~-----~~v~~v~fsp~~~~-L  647 (784)
                      |||+.+.+..... .....+.|.+++|+..-.++|++++.+|.+.|||++..+.+..+.     ..+..+.|+|+... +
T Consensus       143 iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql  222 (1049)
T KOG0307|consen  143 IWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQL  222 (1049)
T ss_pred             EeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceee
Confidence            9999875533222 123567899999999988999999999999999999876555444     33568999998754 5


Q ss_pred             EEEECC---CcEEEEECCCC-eEEEEEeCCCCCEEEEEEcCCC-CEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEE
Q 047260          648 LAAASD---KVVSIFDIETD-RQTHSLQGHAELVNYICWDTNG-DYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSC  721 (784)
Q Consensus       648 l~~s~D---g~I~IwDl~t~-~~i~~l~~h~~~V~sl~~spdg-~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl  721 (784)
                      ++++.|   -.|.+||+|.- .+++.+.+|...|.++.|++.+ ++|++++.| .|.+|+.++++.+.++....+.+..+
T Consensus       223 ~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv  302 (1049)
T KOG0307|consen  223 LVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDV  302 (1049)
T ss_pred             eeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeee
Confidence            556554   47999999875 6777888999999999999966 777777755 99999999999999999999999999


Q ss_pred             EEecCCC-EEEEEECCCeEEEEECCCCc
Q 047260          722 VFHPSYS-TLLVVGGISSLELWNMAENK  748 (784)
Q Consensus       722 ~fspdg~-~L~s~s~dg~I~Iwdl~~~~  748 (784)
                      .|+|... .+++++-||.|.||.+.+..
T Consensus       303 ~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  303 QWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             eecCCCcchhhhheeccceeeeeeecCC
Confidence            9999887 67778889999999987765

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.82  E-value=2.8e-18  Score=189.48  Aligned_cols=323  Identities=16%  Similarity=0.215  Sum_probs=244.6

Q ss_pred             ccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCCC
Q 047260          441 ASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGK  520 (784)
Q Consensus       441 ~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~  520 (784)
                      +.+..-.+....+| +.|.|.++.+|...+..  -.++..                 -.+....+.......+.|+|+++
T Consensus       270 V~sv~W~p~~~~LL-SASaDksmiiW~pd~~t--GiWv~~-----------------vRlGe~gg~a~GF~g~lw~~n~~  329 (764)
T KOG1063|consen  270 VYSVWWHPEGLDLL-SASADKSMIIWKPDENT--GIWVDV-----------------VRLGEVGGSAGGFWGGLWSPNSN  329 (764)
T ss_pred             eEEEEEccchhhhe-ecccCcceEEEecCCcc--ceEEEE-----------------EEeecccccccceeeEEEcCCCC
Confidence            33444445555565 57899999999553321  112111                 12233335667799999999999


Q ss_pred             EEEEEeCCCeEEEEECCC---CceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcce---eeeccCCCCC
Q 047260          521 LLASSGHDRKVVLWNMDT---LQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFC---SQAYTGHSSP  594 (784)
Q Consensus       521 ~Lasgs~Dg~I~IWd~~t---~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~---~~~~~~h~~~  594 (784)
                      .+++-+..|-.++|..+.   ......+.+|.+.|++|+|+|.|.+|++++.|-+-|||---..+..   +..-.-|...
T Consensus       330 ~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyD  409 (764)
T KOG1063|consen  330 VIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYD  409 (764)
T ss_pred             EEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeeccccccccc
Confidence            999999999999998332   2344556799999999999999999999999999999875522211   1122347778


Q ss_pred             eEEEEEcCCCCcEEEEEeCCCeEEEEeCC-------------------------------------------CCee----
Q 047260          595 IMSLDFHPKKTDLFCFCDNDNEIQYWSIN-------------------------------------------PFLC----  627 (784)
Q Consensus       595 V~sl~~sp~~~~ll~sgs~dg~I~iwDl~-------------------------------------------~~~~----  627 (784)
                      ++|++|-+. +..|++|.+...+|+|+..                                           ++..    
T Consensus       410 l~c~~~vn~-~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~  488 (764)
T KOG1063|consen  410 LTCLSFVNE-DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVC  488 (764)
T ss_pred             ceeeehccC-CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccccccccccccee
Confidence            999999875 5688899999999999752                                           0000    


Q ss_pred             --------------------------------EEeecCCeeEEEEecCCCEEEEEECC-----CcEEEEECCCCeEEEEE
Q 047260          628 --------------------------------THITKGGTAQVRFQPRIGQLLAAASD-----KVVSIFDIETDRQTHSL  670 (784)
Q Consensus       628 --------------------------------~~~~~~~v~~v~fsp~~~~Ll~~s~D-----g~I~IwDl~t~~~i~~l  670 (784)
                                                      +.-|.-.+.+++.+|+++.+++++..     ..|++|+..+...+..+
T Consensus       489 ~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L  568 (764)
T KOG1063|consen  489 AETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQEL  568 (764)
T ss_pred             eecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhhee
Confidence                                            00011257889999999999999863     56999999998888899


Q ss_pred             eCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCc----eEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECC
Q 047260          671 QGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGE----CIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMA  745 (784)
Q Consensus       671 ~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~----~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~  745 (784)
                      .+|.-.|+.++|+|||+||++.+.| ++.+|......    .....+.|..-|.+|.|+|++.++++++.|.+|++|...
T Consensus       569 ~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~  648 (764)
T KOG1063|consen  569 EGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEP  648 (764)
T ss_pred             cccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEecc
Confidence            9999999999999999999999976 99999875432    123367899999999999999999999999999999988


Q ss_pred             CC--ceE---EecccCCceEEEEEeCC-----CCEEEEEECCCcEEEeC
Q 047260          746 EN--KSM---TIAAHENIISALAQSPV-----TGMVASASHDSSVKLWK  784 (784)
Q Consensus       746 ~~--~~~---~~~~h~~~V~slafspd-----g~~LaSgs~DG~V~IWd  784 (784)
                      ..  +.+   ....+...|++++|.|-     +..++.|-..|.|.||+
T Consensus       649 ~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~  697 (764)
T KOG1063|consen  649 DLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWR  697 (764)
T ss_pred             CchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEe
Confidence            87  433   44578899999999873     23678888899999995

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.82  E-value=1.1e-18  Score=175.70  Aligned_cols=204  Identities=21%  Similarity=0.387  Sum_probs=168.7

Q ss_pred             CCCCCCeEEEEEcc-CCCEEEEEeCCCeEEEEcCCCCcc-----------e---eeeccCCCCCeEEEEEcCCCCcEEEE
Q 047260          546 EDHKSVVTDVRFRP-NSSQLATASVDKSVRLWDAANPNF-----------C---SQAYTGHSSPIMSLDFHPKKTDLFCF  610 (784)
Q Consensus       546 ~~h~~~It~i~fsp-dg~~Latgs~Dg~I~IWdl~~~~~-----------~---~~~~~~h~~~V~sl~~sp~~~~ll~s  610 (784)
                      ..|.+.|+++...+ .|+++++|+.||.|.|||+++...           +   ...-.+|.-.|.++.|.|-+..+|.+
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts  119 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS  119 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence            35889999999988 789999999999999999976330           1   11124688899999999988889999


Q ss_pred             EeCCCeEEEEeCCCCeeEEeec--CCeeEEEEecCC---CEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCC
Q 047260          611 CDNDNEIQYWSINPFLCTHITK--GGTAQVRFQPRI---GQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTN  685 (784)
Q Consensus       611 gs~dg~I~iwDl~~~~~~~~~~--~~v~~v~fsp~~---~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spd  685 (784)
                      ++.|.++++||.++......++  +.|.+-+++|-.   ..+++|..|-.|++.|+..|..-+.+.+|...|.+|.|+|.
T Consensus       120 sSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~  199 (397)
T KOG4283|consen  120 SSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPS  199 (397)
T ss_pred             ccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccC
Confidence            9999999999999987766554  777877887753   34566666899999999999999999999999999999998


Q ss_pred             CCEE-EEEe-CCeEEEEeCCCC-ceEEEec--------------cCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCc
Q 047260          686 GDYL-ASVS-QNLVKVWSMASG-ECIQELS--------------SNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENK  748 (784)
Q Consensus       686 g~~L-asgs-dd~I~IwDl~t~-~~i~~l~--------------~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~  748 (784)
                      .+++ ++|+ |+.|++||++.. -|...+.              .|.+.|+.++|..++.++++++.|..+++|+...++
T Consensus       200 ~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~  279 (397)
T KOG4283|consen  200 SEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR  279 (397)
T ss_pred             ceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCc
Confidence            8865 5566 559999999864 3444443              455778999999999999999999999999998765


Q ss_pred             e
Q 047260          749 S  749 (784)
Q Consensus       749 ~  749 (784)
                      .
T Consensus       280 n  280 (397)
T KOG4283|consen  280 N  280 (397)
T ss_pred             c
Confidence            3

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.82  E-value=1.2e-18  Score=177.48  Aligned_cols=265  Identities=20%  Similarity=0.345  Sum_probs=204.6

Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEECCCC----c--------eeeecC-CCCCCeEEEEEc-------cCCCEEEEEeC
Q 047260          510 VTCCHFSSDGKLLASSGHDRKVVLWNMDTL----Q--------TESTPE-DHKSVVTDVRFR-------PNSSQLATASV  569 (784)
Q Consensus       510 V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~----~--------~~~~l~-~h~~~It~i~fs-------pdg~~Latgs~  569 (784)
                      ...+.|+|||..|++-+.|..+.+|++...    +        ....++ .....|...+|-       |+..++++.+.
T Consensus        52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr  131 (406)
T KOG2919|consen   52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR  131 (406)
T ss_pred             hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence            567899999999999999999999998521    0        011111 234568888886       56778999999


Q ss_pred             CCeEEEEcCCCCcceeeecc--CCCC---CeEEEEEcCCCCcEEEEEeCCCeEEEEeC-CCCeeE----------EeecC
Q 047260          570 DKSVRLWDAANPNFCSQAYT--GHSS---PIMSLDFHPKKTDLFCFCDNDNEIQYWSI-NPFLCT----------HITKG  633 (784)
Q Consensus       570 Dg~I~IWdl~~~~~~~~~~~--~h~~---~V~sl~~sp~~~~ll~sgs~dg~I~iwDl-~~~~~~----------~~~~~  633 (784)
                      |.-|++||.-+++ ....+.  .|..   ...+++|+|||..++  ++....|++||+ ++++..          ....+
T Consensus       132 ~~PIh~wdaftG~-lraSy~~ydh~de~taAhsL~Fs~DGeqlf--aGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~g  208 (406)
T KOG2919|consen  132 DQPIHLWDAFTGK-LRASYRAYDHQDEYTAAHSLQFSPDGEQLF--AGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKG  208 (406)
T ss_pred             cCceeeeeccccc-cccchhhhhhHHhhhhheeEEecCCCCeEe--ecccceEEEeeccCCCCCCcchhhhhcccccccc
Confidence            9999999999877 333333  2333   346899999999665  456889999999 443221          11235


Q ss_pred             CeeEEEEecCCC-EEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEeCCCC-ceEE
Q 047260          634 GTAQVRFQPRIG-QLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVS--QNLVKVWSMASG-ECIQ  709 (784)
Q Consensus       634 ~v~~v~fsp~~~-~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgs--dd~I~IwDl~t~-~~i~  709 (784)
                      -+.+++|+|... .+++++....+-||.-....++..+-+|.+.|+.++|.++|+.|++|+  ++.|.+||++.. .++.
T Consensus       209 iisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~  288 (406)
T KOG2919|consen  209 IISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVY  288 (406)
T ss_pred             eeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhh
Confidence            678899999776 677777788999999888999999999999999999999999999998  449999999864 5666


Q ss_pred             EeccCCC-ceEEEE--EecCCCEEEEEECCCeEEEEECCC-Cc-eEEecccCCceEEEEEeCCCCEEEEEECC
Q 047260          710 ELSSNGN-QFHSCV--FHPSYSTLLVVGGISSLELWNMAE-NK-SMTIAAHENIISALAQSPVTGMVASASHD  777 (784)
Q Consensus       710 ~l~~~~~-~I~sl~--fspdg~~L~s~s~dg~I~Iwdl~~-~~-~~~~~~h~~~V~slafspdg~~LaSgs~D  777 (784)
                      .+..|.. .-..|.  ..|++++|++|+.||.|++||+++ +. ...+..|...|+.++++|-=.++++++..
T Consensus       289 ~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  289 ALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             hhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence            7766644 223444  468899999999999999999998 55 34667899999999999987788887643

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.82  E-value=9.7e-19  Score=178.73  Aligned_cols=278  Identities=18%  Similarity=0.344  Sum_probs=214.3

Q ss_pred             eecCCCceEEEEEcC-----CCCEEEEEeCCCeEEEEECCCCc---eeeec--CCCCCCeEEEEEccC----CCEEEEEe
Q 047260          503 IRSRNSKVTCCHFSS-----DGKLLASSGHDRKVVLWNMDTLQ---TESTP--EDHKSVVTDVRFRPN----SSQLATAS  568 (784)
Q Consensus       503 l~~H~~~V~~l~fsp-----dg~~Lasgs~Dg~I~IWd~~t~~---~~~~l--~~h~~~It~i~fspd----g~~Latgs  568 (784)
                      ...|+.+|..++|++     +...+|+++. ..|.||.....-   .+..+  ..|.+....++|+-+    ..++|.++
T Consensus        34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G  112 (385)
T KOG1034|consen   34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG  112 (385)
T ss_pred             hccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence            346889999999985     2235666664 468888876322   22222  247788888999863    45789999


Q ss_pred             CCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec------CCeeEEEEec
Q 047260          569 VDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK------GGTAQVRFQP  642 (784)
Q Consensus       569 ~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~------~~v~~v~fsp  642 (784)
                      .-|.|+|.|+.+.. +...+.+|...|..|.++|+...++++++.|..|++|++++..|+..+.      ..|.++.|+.
T Consensus       113 ~~GvIrVid~~~~~-~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~  191 (385)
T KOG1034|consen  113 YLGVIRVIDVVSGQ-CSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSL  191 (385)
T ss_pred             ceeEEEEEecchhh-hccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcC
Confidence            99999999999866 7788899999999999999999999999999999999999999998765      5789999999


Q ss_pred             CCCEEEEEECCCcEEEEECCCCeEEE----------------------------EEeCCCCCEEEEEEcCCCCEEEEEe-
Q 047260          643 RIGQLLAAASDKVVSIFDIETDRQTH----------------------------SLQGHAELVNYICWDTNGDYLASVS-  693 (784)
Q Consensus       643 ~~~~Ll~~s~Dg~I~IwDl~t~~~i~----------------------------~l~~h~~~V~sl~~spdg~~Lasgs-  693 (784)
                      ++.+|++++.|..|++|++...+...                            +-.-|...|-|+.|-  |+++++-+ 
T Consensus       192 ~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSksc  269 (385)
T KOG1034|consen  192 DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSC  269 (385)
T ss_pred             CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeeccc
Confidence            99999999999999999997322100                            011255556666664  56777755 


Q ss_pred             CCeEEEEeCC-CC-------------ceEEEeccCCCceEEEE--EecCCCEEEEEECCCeEEEEECCCCceE---Eec-
Q 047260          694 QNLVKVWSMA-SG-------------ECIQELSSNGNQFHSCV--FHPSYSTLLVVGGISSLELWNMAENKSM---TIA-  753 (784)
Q Consensus       694 dd~I~IwDl~-t~-------------~~i~~l~~~~~~I~sl~--fspdg~~L~s~s~dg~I~Iwdl~~~~~~---~~~-  753 (784)
                      ++.|..|... -+             ..+.++.-....|+-+.  |.|-.+.|+.|...|+|++||++..+..   ++. 
T Consensus       270 enaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~  349 (385)
T KOG1034|consen  270 ENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTH  349 (385)
T ss_pred             CceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEe
Confidence            6699999872 11             12344444555555554  5677788999999999999999987663   222 


Q ss_pred             -ccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          754 -AHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       754 -~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                       .....|...+|+.|+.+|+..++|+.|.-||
T Consensus       350 s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd  381 (385)
T KOG1034|consen  350 SKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD  381 (385)
T ss_pred             ccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence             3356799999999999999999999999986

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.82  E-value=1.5e-18  Score=181.69  Aligned_cols=304  Identities=18%  Similarity=0.257  Sum_probs=212.0

Q ss_pred             cccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCCCE
Q 047260          442 SASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKL  521 (784)
Q Consensus       442 ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~~  521 (784)
                      ....|..+...++++|..|..+++|....+..+..                 .....-+..|..|...|++|.|+|+|++
T Consensus        17 ~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~-----------------~~~V~y~s~Ls~H~~aVN~vRf~p~gel   79 (434)
T KOG1009|consen   17 YSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG-----------------DMKVEYLSSLSRHTRAVNVVRFSPDGEL   79 (434)
T ss_pred             EEEEeccCcccceecccCccceeeeeeeecCCCCC-----------------ceeEEEeecccCCcceeEEEEEcCCcCe
Confidence            33444455554777888999999998865542211                 1345567788899999999999999999


Q ss_pred             EEEEeCCCeEEEEECC--------C--------CceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCccee
Q 047260          522 LASSGHDRKVVLWNMD--------T--------LQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCS  585 (784)
Q Consensus       522 Lasgs~Dg~I~IWd~~--------t--------~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~  585 (784)
                      ||+|+++|.|.+|...        +        ....+.+.+|...|..++|+|++.++++++-|..+++||+..+. ..
T Consensus        80 LASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~-l~  158 (434)
T KOG1009|consen   80 LASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQ-LL  158 (434)
T ss_pred             eeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccce-eE
Confidence            9999999999999765        2        34456677899999999999999999999999999999999977 77


Q ss_pred             eeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCCe-eEEEEecCCCEEEEEECCCcEEEEECCCC
Q 047260          586 QAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGT-AQVRFQPRIGQLLAAASDKVVSIFDIETD  664 (784)
Q Consensus       586 ~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v-~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~  664 (784)
                      ..+.+|...|..++|.|-+. ++++-+.|...+.+++.....+..+...+ ..-.+.+.        .....++|--++.
T Consensus       159 ~~~~dh~~yvqgvawDpl~q-yv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~--------e~~s~rLfhDeTl  229 (434)
T KOG1009|consen  159 AILDDHEHYVQGVAWDPLNQ-YVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNER--------EGKSTRLFHDETL  229 (434)
T ss_pred             eeccccccccceeecchhhh-hhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCC--------CcceeeeeecCch
Confidence            88899999999999999877 55555666666666655433332222100 00001111        1122223222221


Q ss_pred             eEEEEEeCCCCCEEEEEEcCCCCEEEEEe-----CC-----eEEEEeCCC-CceEEEeccCCCceEEEEEec--------
Q 047260          665 RQTHSLQGHAELVNYICWDTNGDYLASVS-----QN-----LVKVWSMAS-GECIQELSSNGNQFHSCVFHP--------  725 (784)
Q Consensus       665 ~~i~~l~~h~~~V~sl~~spdg~~Lasgs-----dd-----~I~IwDl~t-~~~i~~l~~~~~~I~sl~fsp--------  725 (784)
                               ..-...++|+|+|.+|++.+     .+     ..++|+-.. .+++..+......+..+.|+|        
T Consensus       230 ---------ksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~  300 (434)
T KOG1009|consen  230 ---------KSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPL  300 (434)
T ss_pred             ---------hhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccc
Confidence                     12345678889998888754     11     345555433 244555555555555555443        


Q ss_pred             ---------CCCEEEEEECCCeEEEEECCCCceEE--ecccCCceEEEEEeCCCCEEEEEECCCcEE
Q 047260          726 ---------SYSTLLVVGGISSLELWNMAENKSMT--IAAHENIISALAQSPVTGMVASASHDSSVK  781 (784)
Q Consensus       726 ---------dg~~L~s~s~dg~I~Iwdl~~~~~~~--~~~h~~~V~slafspdg~~LaSgs~DG~V~  781 (784)
                               -.+.+++....+.|+|||..+...+.  -.-|-..|+.++|++||.+|+..+.||...
T Consensus       301 ~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS  367 (434)
T KOG1009|consen  301 SSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCS  367 (434)
T ss_pred             cccccccccccceEEEEeecceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceE
Confidence                     12345666666789999999987773  346889999999999999999999999754

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.82  E-value=1e-18  Score=191.07  Aligned_cols=268  Identities=16%  Similarity=0.279  Sum_probs=209.0

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeec
Q 047260          509 KVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAY  588 (784)
Q Consensus       509 ~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~  588 (784)
                      .|..++|-|||..|+.+. +..+.|||...|..+.++++|.+.|.|++|+.||+.+++|+.|+.|.||.-.-...   ..
T Consensus        14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~---Lk   89 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI---LK   89 (1081)
T ss_pred             chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccce---ee
Confidence            799999999999888765 45699999999999999999999999999999999999999999999998764331   22


Q ss_pred             cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeE-EeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEE
Q 047260          589 TGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCT-HITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQT  667 (784)
Q Consensus       589 ~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~-~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i  667 (784)
                      ..|.+.|.|+.|+|-.. .+++|+ -...-+|........ ......+.+++|..||.+++.|-.+|+|.|-+....+.+
T Consensus        90 YSH~D~IQCMsFNP~~h-~LasCs-LsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~  167 (1081)
T KOG1538|consen   90 YSHNDAIQCMSFNPITH-QLASCS-LSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKV  167 (1081)
T ss_pred             eccCCeeeEeecCchHH-Hhhhcc-hhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcce
Confidence            46899999999999865 566665 344567776643322 223366788999999999999999999999865433333


Q ss_pred             EEEe---CCCCCEEEEEEcCCC-----CEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCe
Q 047260          668 HSLQ---GHAELVNYICWDTNG-----DYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISS  738 (784)
Q Consensus       668 ~~l~---~h~~~V~sl~~spdg-----~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~  738 (784)
                       .+.   +.+.+|.+++|+|..     ..+++..-+ ++.+|.+. |+.+..-..-+-...|+.+.++|.+++.|+.|+.
T Consensus       168 -~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~  245 (1081)
T KOG1538|consen  168 -KIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQ  245 (1081)
T ss_pred             -EEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCCc
Confidence             333   467899999999963     345555544 66666553 4444433333445678999999999999999999


Q ss_pred             EEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          739 LELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       739 I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      +++|..+.-..-++...+..|+.+...|++.+++.|+.||+|..|+
T Consensus       246 L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyN  291 (1081)
T KOG1538|consen  246 LSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYN  291 (1081)
T ss_pred             eEEEeecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhh
Confidence            9999755444446667788999999999999999999999997664

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.82  E-value=5.5e-19  Score=192.03  Aligned_cols=241  Identities=18%  Similarity=0.251  Sum_probs=200.4

Q ss_pred             eeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEE
Q 047260          541 TESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYW  620 (784)
Q Consensus       541 ~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iw  620 (784)
                      +...+.+|++.|.+|...|.|.+|++|+.||+|+||.+.++. |++.+. ..+.|.||+|+|....-+++...+..+.|.
T Consensus       392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgR-cvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~iv  469 (733)
T KOG0650|consen  392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGR-CVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIV  469 (733)
T ss_pred             eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecce-EEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEe
Confidence            344567999999999999999999999999999999999988 555443 346899999999876544444444444444


Q ss_pred             eCC---------------------------------------CC-eeEEeecCCeeEEEEecCCCEEEEEECC---CcEE
Q 047260          621 SIN---------------------------------------PF-LCTHITKGGTAQVRFQPRIGQLLAAASD---KVVS  657 (784)
Q Consensus       621 Dl~---------------------------------------~~-~~~~~~~~~v~~v~fsp~~~~Ll~~s~D---g~I~  657 (784)
                      +..                                       .+ .....+...+..+.|+..|.+|++...+   ..|.
T Consensus       470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vl  549 (733)
T KOG0650|consen  470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVL  549 (733)
T ss_pred             CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEE
Confidence            321                                       01 1222334677889999999999988764   6799


Q ss_pred             EEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCC
Q 047260          658 IFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGIS  737 (784)
Q Consensus       658 IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg  737 (784)
                      |+++...+...-|....+.|.++.|+|...+|++++...|+|||+...+.++++......|..++++|.|..|++++.|+
T Consensus       550 iHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~  629 (733)
T KOG0650|consen  550 IHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDK  629 (733)
T ss_pred             EEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCC
Confidence            99998877666676678899999999999999999999999999999998888888889999999999999999999999


Q ss_pred             eEEEEECCCCceE--EecccCCceEEEEEeCCCCEEEEEECCCcEEEe
Q 047260          738 SLELWNMAENKSM--TIAAHENIISALAQSPVTGMVASASHDSSVKLW  783 (784)
Q Consensus       738 ~I~Iwdl~~~~~~--~~~~h~~~V~slafspdg~~LaSgs~DG~V~IW  783 (784)
                      .+..||+.-....  ++..|...|++|+|++.-.++++|+.||.|.||
T Consensus       630 k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vf  677 (733)
T KOG0650|consen  630 KMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVF  677 (733)
T ss_pred             eeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEE
Confidence            9999999876443  788999999999999999999999999999886

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.81  E-value=1.9e-18  Score=187.99  Aligned_cols=134  Identities=24%  Similarity=0.472  Sum_probs=107.9

Q ss_pred             ECCCcEEEEECCCC-eEEE-EEe--CCCCCEEEEEEcC-CCCEEEEEeCC-eEEEEeCCCC-------ceEEEeccCCCc
Q 047260          651 ASDKVVSIFDIETD-RQTH-SLQ--GHAELVNYICWDT-NGDYLASVSQN-LVKVWSMASG-------ECIQELSSNGNQ  717 (784)
Q Consensus       651 s~Dg~I~IwDl~t~-~~i~-~l~--~h~~~V~sl~~sp-dg~~Lasgsdd-~I~IwDl~t~-------~~i~~l~~~~~~  717 (784)
                      +..|.|-||+++.. ++.- .+.  -....|+.+.|+| |...|++++|+ .|+||.+..+       .+...+..|...
T Consensus       600 g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eK  679 (1012)
T KOG1445|consen  600 GSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEK  679 (1012)
T ss_pred             CCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccce
Confidence            34577778887653 2111 111  1456799999999 66677777766 9999998754       355678889999


Q ss_pred             eEEEEEecCC-CEEEEEECCCeEEEEECCCCceE-EecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          718 FHSCVFHPSY-STLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       718 I~sl~fspdg-~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      |+++.|+|-. ..|++++.|-+|++||+.+.+.. .+.+|.+.|..++|+|||+.+++.|.||+|+||+
T Consensus       680 I~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~  748 (1012)
T KOG1445|consen  680 ITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYE  748 (1012)
T ss_pred             EEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeC
Confidence            9999999954 46888999999999999998776 8899999999999999999999999999999985

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.81  E-value=9.6e-17  Score=175.31  Aligned_cols=281  Identities=27%  Similarity=0.514  Sum_probs=224.1

Q ss_pred             EeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-eeeecCCCC-CCeEEEEE-ccCCC-EEEEEeC-CCeEEEE
Q 047260          502 CIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQ-TESTPEDHK-SVVTDVRF-RPNSS-QLATASV-DKSVRLW  576 (784)
Q Consensus       502 ~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~-~~~~l~~h~-~~It~i~f-spdg~-~Latgs~-Dg~I~IW  576 (784)
                      .+..|...|.++.|.+.+..++.++.|+.+.+|+..... .+..+..+. ..+..+.+ .+++. +++..+. |+.+.+|
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  139 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW  139 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence            456799999999999999999999999999999999876 666666644 37777777 77777 5555455 9999999


Q ss_pred             cCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeC-CCeEEEEeCCCCeeEEee---cCCeeEEEEecCCCEEEEE-E
Q 047260          577 DAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDN-DNEIQYWSINPFLCTHIT---KGGTAQVRFQPRIGQLLAA-A  651 (784)
Q Consensus       577 dl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~-dg~I~iwDl~~~~~~~~~---~~~v~~v~fsp~~~~Ll~~-s  651 (784)
                      |+.........+..|...|.+++|+|++. .+++++. ++.+++|++.....+..+   ...+.++.|+|++..++++ +
T Consensus       140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  218 (466)
T COG2319         140 DLSTPGKLIRTLEGHSESVTSLAFSPDGK-LLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGS  218 (466)
T ss_pred             EecCCCeEEEEEecCcccEEEEEECCCCC-EEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEec
Confidence            99873346777889999999999999998 5556664 999999999875554444   4688999999998844444 7


Q ss_pred             CCCcEEEEECCCCeEEE-EEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCce-EEEeccCCCceEEEEEecCCC
Q 047260          652 SDKVVSIFDIETDRQTH-SLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGEC-IQELSSNGNQFHSCVFHPSYS  728 (784)
Q Consensus       652 ~Dg~I~IwDl~t~~~i~-~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~-i~~l~~~~~~I~sl~fspdg~  728 (784)
                      .|+.|++||...+..+. .+.+|...+ ...|++++.++++++.+ .+++||+..... +..+..|...+.++.|.|++.
T Consensus       219 ~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  297 (466)
T COG2319         219 SDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGK  297 (466)
T ss_pred             CCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCC
Confidence            89999999999888877 688888875 44899999888877755 999999987664 555567788999999999888


Q ss_pred             EEEEEECCCeEEEEECCCCceE-Ee--cccCCceEEEEEeCCCCEEEEE-ECCCcEEEeC
Q 047260          729 TLLVVGGISSLELWNMAENKSM-TI--AAHENIISALAQSPVTGMVASA-SHDSSVKLWK  784 (784)
Q Consensus       729 ~L~s~s~dg~I~Iwdl~~~~~~-~~--~~h~~~V~slafspdg~~LaSg-s~DG~V~IWd  784 (784)
                      .+++++.|+.+.+||....... ..  ..|...|..+.|.+++..++.+ ..|+.+.+|+
T Consensus       298 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  357 (466)
T COG2319         298 LLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWD  357 (466)
T ss_pred             EEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeee
Confidence            8888888988999999888766 33  3688889999994332455555 6788898885

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=1.7e-17  Score=183.30  Aligned_cols=275  Identities=16%  Similarity=0.195  Sum_probs=216.9

Q ss_pred             ccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecC-CCceEEEEEcCCC
Q 047260          441 ASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSR-NSKVTCCHFSSDG  519 (784)
Q Consensus       441 ~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H-~~~V~~l~fspdg  519 (784)
                      +.+..+...... ++++..|+++++|+...                         .+.....+.++ ++.|.+++|++ +
T Consensus        28 I~slA~s~kS~~-lAvsRt~g~IEiwN~~~-------------------------~w~~~~vi~g~~drsIE~L~W~e-~   80 (691)
T KOG2048|consen   28 IVSLAYSHKSNQ-LAVSRTDGNIEIWNLSN-------------------------NWFLEPVIHGPEDRSIESLAWAE-G   80 (691)
T ss_pred             eEEEEEeccCCc-eeeeccCCcEEEEccCC-------------------------CceeeEEEecCCCCceeeEEEcc-C
Confidence            334444444444 66899999999997733                         22334445554 56799999994 5


Q ss_pred             CEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCccee-eeccCCCCCeEEE
Q 047260          520 KLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCS-QAYTGHSSPIMSL  598 (784)
Q Consensus       520 ~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~-~~~~~h~~~V~sl  598 (784)
                      ..|++.+.+|.|.-||+.+++....+....+.|++++.+|.+..++.||+||.+..++...+.... ..+...++.|.++
T Consensus        81 ~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLsl  160 (691)
T KOG2048|consen   81 GRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSL  160 (691)
T ss_pred             CeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEE
Confidence            568888999999999999999999999999999999999999999999999988888887765332 3344556899999


Q ss_pred             EEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec-----------CCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEE
Q 047260          599 DFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK-----------GGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQT  667 (784)
Q Consensus       599 ~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~-----------~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i  667 (784)
                      +|+|++. .+++|+.||.|++||......++.+.           .-+.++.|- ....|++|.+.|+|.+||...+..+
T Consensus       161 sw~~~~~-~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L-rd~tI~sgDS~G~V~FWd~~~gTLi  238 (691)
T KOG2048|consen  161 SWNPTGT-KIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL-RDSTIASGDSAGTVTFWDSIFGTLI  238 (691)
T ss_pred             EecCCcc-EEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEe-ecCcEEEecCCceEEEEcccCcchh
Confidence            9999986 57889999999999999877666332           123445555 4477899999999999999999999


Q ss_pred             EEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEeCCCCce----EEEeccCCCceEEEEEecCCCEEEEEECCCeEEEE
Q 047260          668 HSLQGHAELVNYICWDTNGDYLASVS-QNLVKVWSMASGEC----IQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELW  742 (784)
Q Consensus       668 ~~l~~h~~~V~sl~~spdg~~Lasgs-dd~I~IwDl~t~~~----i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iw  742 (784)
                      ..+..|...|.+++..+++.++++++ |+.|..|...+.+.    ......|...|.+++..++  .+++|+.|..+.+-
T Consensus       239 qS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~  316 (691)
T KOG2048|consen  239 QSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAIC  316 (691)
T ss_pred             hhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEc
Confidence            99999999999999999988888777 55777777665532    2233468889999999888  89999999988887


Q ss_pred             ECCC
Q 047260          743 NMAE  746 (784)
Q Consensus       743 dl~~  746 (784)
                      ....
T Consensus       317 ~s~~  320 (691)
T KOG2048|consen  317 SSRE  320 (691)
T ss_pred             cccc
Confidence            6554

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=4.7e-18  Score=176.29  Aligned_cols=281  Identities=15%  Similarity=0.254  Sum_probs=214.3

Q ss_pred             eEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCC------CceeeecC-CCCCCeEEEEEccCCCEEEEEeCCCeE
Q 047260          501 GCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDT------LQTESTPE-DHKSVVTDVRFRPNSSQLATASVDKSV  573 (784)
Q Consensus       501 ~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t------~~~~~~l~-~h~~~It~i~fspdg~~Latgs~Dg~I  573 (784)
                      +.+.+|.+.|++|.|+.++++||+|+.|..++||+++.      .+++.... .|...|.|++|....++|++|..+++|
T Consensus        50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V  129 (609)
T KOG4227|consen   50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV  129 (609)
T ss_pred             hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence            44678999999999999999999999999999999863      34444443 456899999999999999999999999


Q ss_pred             EEEcCCCCcceeeecc--CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe------eEEeecCCeeEEEEecCCC
Q 047260          574 RLWDAANPNFCSQAYT--GHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFL------CTHITKGGTAQVRFQPRIG  645 (784)
Q Consensus       574 ~IWdl~~~~~~~~~~~--~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~------~~~~~~~~v~~v~fsp~~~  645 (784)
                      .+.|+++.. .+..+.  ...+.|+.+..+|.. ++|++.+.++.|.+||++...      |..........+.|+|...
T Consensus       130 I~HDiEt~q-si~V~~~~~~~~~VY~m~~~P~D-N~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P  207 (609)
T KOG4227|consen  130 IKHDIETKQ-SIYVANENNNRGDVYHMDQHPTD-NTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETP  207 (609)
T ss_pred             Eeeecccce-eeeeecccCcccceeecccCCCC-ceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCc
Confidence            999999866 333332  234589999999995 488888999999999998532      2233335667888999876


Q ss_pred             EEE-EEECCCcEEEEECCCCe-EEEEE------eCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCce-EEEeccC-
Q 047260          646 QLL-AAASDKVVSIFDIETDR-QTHSL------QGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGEC-IQELSSN-  714 (784)
Q Consensus       646 ~Ll-~~s~Dg~I~IwDl~t~~-~i~~l------~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~-i~~l~~~-  714 (784)
                      .|+ +....+-+-+||.+... .+...      .........+.|+|+|..|.+.-.+ .-.+||+-+..| +..+... 
T Consensus       208 ~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~  287 (609)
T KOG4227|consen  208 ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNP  287 (609)
T ss_pred             eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCC
Confidence            654 55567899999998653 22221      1122334678899999998887766 677889887544 4444321 


Q ss_pred             -----CCceEEEEEecCCCEEEEEECCCeEEEEECCC------------------------CceEEecccCCceEEEEEe
Q 047260          715 -----GNQFHSCVFHPSYSTLLVVGGISSLELWNMAE------------------------NKSMTIAAHENIISALAQS  765 (784)
Q Consensus       715 -----~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~------------------------~~~~~~~~h~~~V~slafs  765 (784)
                           ...+.+|+|..+.. +++|+.+-.|++|.+..                        +....+.+|.+.++.+.|+
T Consensus       288 ~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~  366 (609)
T KOG4227|consen  288 NGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFS  366 (609)
T ss_pred             Ccceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeec
Confidence                 23467788887765 88888888999998742                        1123577999999999999


Q ss_pred             CCCCEEEEEECCCcEEEeC
Q 047260          766 PVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       766 pdg~~LaSgs~DG~V~IWd  784 (784)
                      |...+|++.+-+..++||-
T Consensus       367 ~H~~~l~SSGVE~~~KlWS  385 (609)
T KOG4227|consen  367 QHNNLLVSSGVENSFKLWS  385 (609)
T ss_pred             CCcceEeccchhhheeccc
Confidence            9999999999999999993

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.80  E-value=2.8e-18  Score=178.07  Aligned_cols=237  Identities=19%  Similarity=0.317  Sum_probs=185.0

Q ss_pred             CCCCCCeEEEEEccCC--CEEEEEeCCCeEEEEcCCCC---------------cceeeeccCCCCCeEEEEEcCCCCcEE
Q 047260          546 EDHKSVVTDVRFRPNS--SQLATASVDKSVRLWDAANP---------------NFCSQAYTGHSSPIMSLDFHPKKTDLF  608 (784)
Q Consensus       546 ~~h~~~It~i~fspdg--~~Latgs~Dg~I~IWdl~~~---------------~~~~~~~~~h~~~V~sl~~sp~~~~ll  608 (784)
                      ..|.+.|+.+.-.+-+  .+.++=+..|.|.|||+...               ...+.++.+|...-+.|+|+|-....+
T Consensus       148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L  227 (440)
T KOG0302|consen  148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL  227 (440)
T ss_pred             cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence            3688888888877744  45566677899999998531               124566789999999999999766678


Q ss_pred             EEEeCCCeEEEEeCCCCe------eEEeecCCeeEEEEecCCCE-EEEEECCCcEEEEECCCC--eEEEEEeCCCCCEEE
Q 047260          609 CFCDNDNEIQYWSINPFL------CTHITKGGTAQVRFQPRIGQ-LLAAASDKVVSIFDIETD--RQTHSLQGHAELVNY  679 (784)
Q Consensus       609 ~sgs~dg~I~iwDl~~~~------~~~~~~~~v~~v~fsp~~~~-Ll~~s~Dg~I~IwDl~t~--~~i~~l~~h~~~V~s  679 (784)
                      ++|+.-+.|++|...++.      ....+...|..++|+|.... |++|+.||+|+|||++.+  +.....+.|.+.|+.
T Consensus       228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNV  307 (440)
T KOG0302|consen  228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNV  307 (440)
T ss_pred             ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceee
Confidence            889888999999887532      23346677888999997654 566677999999999987  233334789999999


Q ss_pred             EEEcCCCCEEEEEeCC-eEEEEeCCC---CceEEEeccCCCceEEEEEecCC-CEEEEEECCCeEEEEECCCCce-----
Q 047260          680 ICWDTNGDYLASVSQN-LVKVWSMAS---GECIQELSSNGNQFHSCVFHPSY-STLLVVGGISSLELWNMAENKS-----  749 (784)
Q Consensus       680 l~~spdg~~Lasgsdd-~I~IwDl~t---~~~i~~l~~~~~~I~sl~fspdg-~~L~s~s~dg~I~Iwdl~~~~~-----  749 (784)
                      |.|+.+-.+|++|+|+ +++|||++.   +.++.+|+-|..+|+++.|+|.. ..|++++.|..|.|||+.-..-     
T Consensus       308 ISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~  387 (440)
T KOG0302|consen  308 ISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEID  387 (440)
T ss_pred             EEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhc
Confidence            9999988899999977 999999986   57899999999999999999965 4578888899999999864321     


Q ss_pred             ------------EEeccc--CCceEEEEEeCCC-CEEEEEECCCcEEEe
Q 047260          750 ------------MTIAAH--ENIISALAQSPVT-GMVASASHDSSVKLW  783 (784)
Q Consensus       750 ------------~~~~~h--~~~V~slafspdg-~~LaSgs~DG~V~IW  783 (784)
                                  .-++.|  ...|..|.|++.- .+|++.+.|| +.||
T Consensus       388 ~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf  435 (440)
T KOG0302|consen  388 QEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF  435 (440)
T ss_pred             cccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence                        023344  3468889999863 4899999998 4454

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=2.9e-18  Score=176.25  Aligned_cols=264  Identities=19%  Similarity=0.307  Sum_probs=193.4

Q ss_pred             CEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEcc--CCCEEEEEeCCCeEEEEcCCCCccee-eeccCCC-CCe
Q 047260          520 KLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRP--NSSQLATASVDKSVRLWDAANPNFCS-QAYTGHS-SPI  595 (784)
Q Consensus       520 ~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fsp--dg~~Latgs~Dg~I~IWdl~~~~~~~-~~~~~h~-~~V  595 (784)
                      ..+|++...|.|++||..++..+..++++...+..++|..  ....+.+|+.||+|++||++...... ..+..+. .+.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            5788999999999999999999999999999999999987  46789999999999999999855433 3344454 466


Q ss_pred             EEEEEcCCCCcEEEEEe----CCCeEEEEeCCCCee-----EEeecCCeeEEEEecCC-CEEEEEECCCcEEEEECCCCe
Q 047260          596 MSLDFHPKKTDLFCFCD----NDNEIQYWSINPFLC-----THITKGGTAQVRFQPRI-GQLLAAASDKVVSIFDIETDR  665 (784)
Q Consensus       596 ~sl~~sp~~~~ll~sgs----~dg~I~iwDl~~~~~-----~~~~~~~v~~v~fsp~~-~~Ll~~s~Dg~I~IwDl~t~~  665 (784)
                      .|++.+-.+. ++++|.    .+-.|.+||++....     ...|...|++++|+|.. +.|++|+.||.|.+||++...
T Consensus       121 ~~ld~nck~~-ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~  199 (376)
T KOG1188|consen  121 ICLDLNCKKN-IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN  199 (376)
T ss_pred             eEeeccCcCC-eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence            6776654444 777664    367899999997655     34466889999999976 457778889999999997652


Q ss_pred             ---EEEEEeCCCCCEEEEEEcCCC--CEEEEEeCCeEEEEeCCCCceEEEeccCC------------CceEEEEEecCCC
Q 047260          666 ---QTHSLQGHAELVNYICWDTNG--DYLASVSQNLVKVWSMASGECIQELSSNG------------NQFHSCVFHPSYS  728 (784)
Q Consensus       666 ---~i~~l~~h~~~V~sl~~spdg--~~Lasgsdd~I~IwDl~t~~~i~~l~~~~------------~~I~sl~fspdg~  728 (784)
                         .+...-.|...|.++.|..++  ++.+.....+..+|+++.+.+...+....            ..+..+....+..
T Consensus       200 EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~  279 (376)
T KOG1188|consen  200 EEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKD  279 (376)
T ss_pred             chhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcc
Confidence               222223477889999999888  54444446699999999887655543321            1222223333445


Q ss_pred             EEEEEEC-CCeEEEEECC---CCceE----Eec-ccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          729 TLLVVGG-ISSLELWNMA---ENKSM----TIA-AHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       729 ~L~s~s~-dg~I~Iwdl~---~~~~~----~~~-~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      .+++++. .++..++-+.   ++...    .+. +|...|+++.|...+.+++||+.||.|.+|+
T Consensus       280 ~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk  344 (376)
T KOG1188|consen  280 TCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWK  344 (376)
T ss_pred             eEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEe
Confidence            5555555 4555555433   33222    333 4788899999998899999999999999995

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.79  E-value=6.8e-19  Score=190.97  Aligned_cols=254  Identities=17%  Similarity=0.268  Sum_probs=198.5

Q ss_pred             eEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECC--------CCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCe
Q 047260          501 GCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMD--------TLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKS  572 (784)
Q Consensus       501 ~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~--------t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~  572 (784)
                      .++..|.+.|+.+.|.+....|++|+.||+|.+|++.        ..+.+.+|++|.++|.|+++.+++..+++|+.||+
T Consensus       288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~  367 (577)
T KOG0642|consen  288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT  367 (577)
T ss_pred             eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence            3788899999999999999999999999999999993        24678889999999999999999999999999999


Q ss_pred             EEEEcCCC---------CcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCee--EEeecC--CeeEEE
Q 047260          573 VRLWDAAN---------PNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLC--THITKG--GTAQVR  639 (784)
Q Consensus       573 I~IWdl~~---------~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~--~~~~~~--~v~~v~  639 (784)
                      |+.|++..         .......+.||.+.|+.+++++... .|++|+.||+++.|+......  ....+.  -...+.
T Consensus       368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~-~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd  446 (577)
T KOG0642|consen  368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD-RLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVD  446 (577)
T ss_pred             eeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc-ceeeecCCceEEeeccCCcCccccCCccccCCcceEe
Confidence            99996542         2234567789999999999998766 588899999999999876544  111112  223344


Q ss_pred             EecCC-CEEEEEECCCcEEEEECCCCeEEEEEeC-------CCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEE
Q 047260          640 FQPRI-GQLLAAASDKVVSIFDIETDRQTHSLQG-------HAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQE  710 (784)
Q Consensus       640 fsp~~-~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~-------h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~  710 (784)
                      +.... .+.++...-+.-.++|.+....+..+..       ....+..+.++|.+.+.+++.++ .|+++|..+++.+..
T Consensus       447 ~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s  526 (577)
T KOG0642|consen  447 RTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHS  526 (577)
T ss_pred             eccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchh
Confidence            33322 2233333334444555555544444431       22457788999999999998877 999999999999999


Q ss_pred             eccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE-Eeccc
Q 047260          711 LSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM-TIAAH  755 (784)
Q Consensus       711 l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h  755 (784)
                      ...|...++++++.|+|.+|++++.|+.|++|.+....+. ....|
T Consensus       527 ~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~  572 (577)
T KOG0642|consen  527 MVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH  572 (577)
T ss_pred             eeeccceecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence            9999999999999999999999999999999999777665 33344

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.78  E-value=3.7e-19  Score=199.07  Aligned_cols=274  Identities=16%  Similarity=0.309  Sum_probs=217.4

Q ss_pred             eeEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEE
Q 047260          497 FCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLW  576 (784)
Q Consensus       497 ~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IW  576 (784)
                      ...++.+.+|.+.|.|+.|...|.++++|+.|..|+||..++..++..+.+|.+.|+.++.+.+...+++++.|..|++|
T Consensus       180 mk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvW  259 (1113)
T KOG0644|consen  180 MKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVW  259 (1113)
T ss_pred             HHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEE
Confidence            34567788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEE-------eecCCeeEEEEecCCCEEEE
Q 047260          577 DAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTH-------ITKGGTAQVRFQPRIGQLLA  649 (784)
Q Consensus       577 dl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~-------~~~~~v~~v~fsp~~~~Ll~  649 (784)
                      .+.++. .+..+.+|++.|++|+|+|-.     +.+.||++++||.+-.-.+.       ..+.-+..+.|...+..+++
T Consensus       260 rl~~~~-pvsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~T  333 (1113)
T KOG0644|consen  260 RLPDGA-PVSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLT  333 (1113)
T ss_pred             ecCCCc-hHHHHhccccceeeeccCccc-----cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccccc
Confidence            999876 788899999999999999864     67789999999998111111       11234556667777888899


Q ss_pred             EECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCC-CEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCC
Q 047260          650 AASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNG-DYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSY  727 (784)
Q Consensus       650 ~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg-~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg  727 (784)
                      ++.|+.-..|......      .+...+.-+.++.+- .+.+++-.+ .+++|++.+|..++.+.+|...+..+.++|..
T Consensus       334 gs~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn  407 (1113)
T KOG0644|consen  334 GSRDGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFN  407 (1113)
T ss_pred             ccCCcccccchhhHhh------hhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCC
Confidence            9999888877654321      122222222222222 334444444 89999999999999999999999999999987


Q ss_pred             CEE-EEEECCCeEEEEECCCCceE--EecccCCceEEEEEeCCCCEEEEEECCCcEEEe
Q 047260          728 STL-LVVGGISSLELWNMAENKSM--TIAAHENIISALAQSPVTGMVASASHDSSVKLW  783 (784)
Q Consensus       728 ~~L-~s~s~dg~I~Iwdl~~~~~~--~~~~h~~~V~slafspdg~~LaSgs~DG~V~IW  783 (784)
                      ..+ .+++.||+..|||+-.+..+  ...+ .+.+...+|++||..++...+-|.+.|.
T Consensus       408 ~ri~msag~dgst~iwdi~eg~pik~y~~g-h~kl~d~kFSqdgts~~lsd~hgql~i~  465 (1113)
T KOG0644|consen  408 PRIAMSAGYDGSTIIWDIWEGIPIKHYFIG-HGKLVDGKFSQDGTSIALSDDHGQLYIL  465 (1113)
T ss_pred             cHhhhhccCCCceEeeecccCCcceeeecc-cceeeccccCCCCceEecCCCCCceEEe
Confidence            665 56788999999999998776  2334 4556677899999988877777777764

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.77  E-value=1.1e-16  Score=162.63  Aligned_cols=268  Identities=20%  Similarity=0.308  Sum_probs=187.7

Q ss_pred             CCcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcC
Q 047260          438 GSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSS  517 (784)
Q Consensus       438 ~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fsp  517 (784)
                      ..++..+.|...+++++ ++|.|.++++|++.++.                      -+|..-...+.|.+.|..+.|.+
T Consensus        13 ~DlihdVs~D~~GRRmA-tCSsDq~vkI~d~~~~s----------------------~~W~~Ts~Wrah~~Si~rV~WAh   69 (361)
T KOG2445|consen   13 KDLIHDVSFDFYGRRMA-TCSSDQTVKIWDSTSDS----------------------GTWSCTSSWRAHDGSIWRVVWAH   69 (361)
T ss_pred             cceeeeeeecccCceee-eccCCCcEEEEeccCCC----------------------CceEEeeeEEecCCcEEEEEecC
Confidence            35666677766666665 69999999999873332                      34556677889999999999976


Q ss_pred             --CCCEEEEEeCCCeEEEEECC---------CCceeeecCCCCCCeEEEEEcc--CCCEEEEEeCCCeEEEEcCCCCcce
Q 047260          518 --DGKLLASSGHDRKVVLWNMD---------TLQTESTPEDHKSVVTDVRFRP--NSSQLATASVDKSVRLWDAANPNFC  584 (784)
Q Consensus       518 --dg~~Lasgs~Dg~I~IWd~~---------t~~~~~~l~~h~~~It~i~fsp--dg~~Latgs~Dg~I~IWdl~~~~~~  584 (784)
                        -|..+|+++.|++|.||.-.         ......++......|++|.|.|  -|-.||+++.||+||||+.-+....
T Consensus        70 PEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nL  149 (361)
T KOG2445|consen   70 PEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNL  149 (361)
T ss_pred             ccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcccc
Confidence              68999999999999999752         2234456667788999999999  5778999999999999997654321


Q ss_pred             e------------eeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCCeeEEEEecCCCEEEEEEC
Q 047260          585 S------------QAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAAS  652 (784)
Q Consensus       585 ~------------~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v~~v~fsp~~~~Ll~~s~  652 (784)
                      .            .....+..+..|+.|+|..-                                     ....|++|+.
T Consensus       150 s~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~-------------------------------------~~p~iAvgs~  192 (361)
T KOG2445|consen  150 SQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRM-------------------------------------HEPLIAVGSD  192 (361)
T ss_pred             ccchhhhhhhhccCCcccccCcceEEeeccccc-------------------------------------cCceEEEEcc
Confidence            1            11113445566666664310                                     0122333332


Q ss_pred             C-----CcEEEEECCCC----eEEEEEeCCCCCEEEEEEcCC----CCEEEEEeCCeEEEEeCCCC--------------
Q 047260          653 D-----KVVSIFDIETD----RQTHSLQGHAELVNYICWDTN----GDYLASVSQNLVKVWSMASG--------------  705 (784)
Q Consensus       653 D-----g~I~IwDl~t~----~~i~~l~~h~~~V~sl~~spd----g~~Lasgsdd~I~IwDl~t~--------------  705 (784)
                      +     +.++||.....    ..+.++.+|..+|+.|+|.|+    -.+|++++.|-|+||.++..              
T Consensus       193 e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDgv~I~~v~~~~s~i~~ee~~~~~~  272 (361)
T KOG2445|consen  193 EDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDGVRIFKVKVARSAIEEEEVLAPDL  272 (361)
T ss_pred             cCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCcEEEEEEeeccchhhhhcccCCCC
Confidence            2     35666654332    344566789999999999995    24678887666999998731              


Q ss_pred             ------ceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCC---CceEEecccCCceEEEEEe
Q 047260          706 ------ECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAE---NKSMTIAAHENIISALAQS  765 (784)
Q Consensus       706 ------~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~---~~~~~~~~h~~~V~slafs  765 (784)
                            +.+..+..|.+.|..+.|+-.|..|.+.+.||.|++|...-   .++.....-++.|....|+
T Consensus       273 ~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~kC~sv~~~e~~~~~~~~~  341 (361)
T KOG2445|consen  273 MTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLWKCTSVLKAEGSVTKPDFS  341 (361)
T ss_pred             ccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhheeeeEEeccCCCCCcccc
Confidence                  24556778999999999999999999999999999997543   2344333334444444443

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.77  E-value=5.1e-18  Score=168.91  Aligned_cols=280  Identities=20%  Similarity=0.234  Sum_probs=197.5

Q ss_pred             EEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecC-CCCCCeEEEEEccCCCEEEEEeCCCeEEEEc
Q 047260          499 EVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPE-DHKSVVTDVRFRPNSSQLATASVDKSVRLWD  577 (784)
Q Consensus       499 ~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~-~h~~~It~i~fspdg~~Latgs~Dg~I~IWd  577 (784)
                      .+..+++|.+.|+|+.|-.+++ |.+|..-|.|++|++.+.+.+..++ .|...|+.+.-.|+ ..|.+-+.|+.+.+|+
T Consensus         6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~   83 (323)
T KOG0322|consen    6 PFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWT   83 (323)
T ss_pred             CeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEE
Confidence            4556779999999999988775 8889999999999999988888888 67889999999887 5688889999999999


Q ss_pred             CCCCcceeeeccCCCCCeEEEEEcCC-----CC---cEEEEEeCC-CeEEEEeCCCCeeEEee-------cCCeeEEEEe
Q 047260          578 AANPNFCSQAYTGHSSPIMSLDFHPK-----KT---DLFCFCDND-NEIQYWSINPFLCTHIT-------KGGTAQVRFQ  641 (784)
Q Consensus       578 l~~~~~~~~~~~~h~~~V~sl~~sp~-----~~---~ll~sgs~d-g~I~iwDl~~~~~~~~~-------~~~v~~v~fs  641 (784)
                      +......    ..|.-.+.++-|.+.     ..   .+++.-++. ..+.+-|......+...       .+.+.+..+.
T Consensus        84 ia~s~~i----~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~  159 (323)
T KOG0322|consen   84 IAYSAFI----SIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKD  159 (323)
T ss_pred             ccCcceE----EEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecc
Confidence            9864421    112233334433321     11   111111111 01222222221222211       1344555432


Q ss_pred             c-CCC--EEEEEECCCcEEEEECCCCeEE----------EEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEeCCCC--
Q 047260          642 P-RIG--QLLAAASDKVVSIFDIETDRQT----------HSLQGHAELVNYICWDTNGDYLASVS-QNLVKVWSMASG--  705 (784)
Q Consensus       642 p-~~~--~Ll~~s~Dg~I~IwDl~t~~~i----------~~l~~h~~~V~sl~~spdg~~Lasgs-dd~I~IwDl~t~--  705 (784)
                      . .+.  .+++|..+|.|.+||+.++..+          .....|..+|.++.+.+.-..=++++ ++.+..|++...  
T Consensus       160 ~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~g  239 (323)
T KOG0322|consen  160 HACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTG  239 (323)
T ss_pred             ccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccC
Confidence            2 222  3556667999999999987333          33446889999999986433333333 558888887643  


Q ss_pred             c--eEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE-EecccCCceEEEEEeCCCCEEEEEECCCcEEE
Q 047260          706 E--CIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKL  782 (784)
Q Consensus       706 ~--~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg~~LaSgs~DG~V~I  782 (784)
                      .  .-.++......|..+.+.||++.+++++.|+.|+||+.++...+ .+..|.+.|++++|+|+.+++|.++.|++|.+
T Consensus       240 slq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISL  319 (323)
T KOG0322|consen  240 SLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISL  319 (323)
T ss_pred             cccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEe
Confidence            2  22333344566889999999999999999999999999999888 67789999999999999999999999999999


Q ss_pred             eC
Q 047260          783 WK  784 (784)
Q Consensus       783 Wd  784 (784)
                      |+
T Consensus       320 Wk  321 (323)
T KOG0322|consen  320 WK  321 (323)
T ss_pred             ee
Confidence            96

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.76  E-value=3.7e-16  Score=171.15  Aligned_cols=262  Identities=14%  Similarity=0.219  Sum_probs=181.8

Q ss_pred             EEEEeCCCeEEEEECCC-Cc--eeeecCCCCCCeEEEEEccCCCEEEEEe-CCCeEEEEcCCC-CcceeeeccCCCCCeE
Q 047260          522 LASSGHDRKVVLWNMDT-LQ--TESTPEDHKSVVTDVRFRPNSSQLATAS-VDKSVRLWDAAN-PNFCSQAYTGHSSPIM  596 (784)
Q Consensus       522 Lasgs~Dg~I~IWd~~t-~~--~~~~l~~h~~~It~i~fspdg~~Latgs-~Dg~I~IWdl~~-~~~~~~~~~~h~~~V~  596 (784)
                      +++...++.|.+||+.+ ++  .+..+. +.+....++++|++++|++++ .++.|.+|+++. +...............
T Consensus         5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~   83 (330)
T PRK11028          5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPT   83 (330)
T ss_pred             EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCce
Confidence            33446789999999964 33  444443 446678899999999987765 478899999973 2211111112234567


Q ss_pred             EEEEcCCCCcEEEEEeCCCeEEEEeCCCC----eeEEeec--CCeeEEEEecCCCEEEEEEC-CCcEEEEECCCCeEEEE
Q 047260          597 SLDFHPKKTDLFCFCDNDNEIQYWSINPF----LCTHITK--GGTAQVRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHS  669 (784)
Q Consensus       597 sl~~sp~~~~ll~sgs~dg~I~iwDl~~~----~~~~~~~--~~v~~v~fsp~~~~Ll~~s~-Dg~I~IwDl~t~~~i~~  669 (784)
                      .++|+|+++.+++++..++.|.+|++++.    ..+....  .....++++|+++++++++. ++.|.+||+.+...+..
T Consensus        84 ~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~  163 (330)
T PRK11028         84 HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA  163 (330)
T ss_pred             EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence            89999999988887777999999999742    2222222  34577889999999987776 69999999986432211


Q ss_pred             -----Ee-CCCCCEEEEEEcCCCCEEEEEeC--CeEEEEeCCC--C--ceEEEeccC------CCceEEEEEecCCCEEE
Q 047260          670 -----LQ-GHAELVNYICWDTNGDYLASVSQ--NLVKVWSMAS--G--ECIQELSSN------GNQFHSCVFHPSYSTLL  731 (784)
Q Consensus       670 -----l~-~h~~~V~sl~~spdg~~Lasgsd--d~I~IwDl~t--~--~~i~~l~~~------~~~I~sl~fspdg~~L~  731 (784)
                           +. ........+.|+|+|++++++.+  +.|.+||+..  +  +.+.++...      ......+.++|++++++
T Consensus       164 ~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~ly  243 (330)
T PRK11028        164 QEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLY  243 (330)
T ss_pred             cCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEE
Confidence                 11 12234578999999999988874  4999999973  3  334444321      11234688999999999


Q ss_pred             EEEC-CCeEEEEECCCCc-eEEeccc---CCceEEEEEeCCCCEEEEEEC-CCcEEEeC
Q 047260          732 VVGG-ISSLELWNMAENK-SMTIAAH---ENIISALAQSPVTGMVASASH-DSSVKLWK  784 (784)
Q Consensus       732 s~s~-dg~I~Iwdl~~~~-~~~~~~h---~~~V~slafspdg~~LaSgs~-DG~V~IWd  784 (784)
                      ++.. ++.|.+|++.... ...+..+   ......+.|+|+|++|++++. +++|.||+
T Consensus       244 v~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~  302 (330)
T PRK11028        244 ACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYE  302 (330)
T ss_pred             EecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEE
Confidence            9865 5799999986543 2333322   234568999999999998775 89999984

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.76  E-value=2.7e-17  Score=175.39  Aligned_cols=217  Identities=18%  Similarity=0.319  Sum_probs=181.7

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeec
Q 047260          509 KVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAY  588 (784)
Q Consensus       509 ~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~  588 (784)
                      .-+|++......|+++|+..++|+|||+....+.+.+++|...|+++.++-...|||+++..|.|.|..+.++.. ...+
T Consensus        81 ~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~-tt~f  159 (673)
T KOG4378|consen   81 NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQK-TTTF  159 (673)
T ss_pred             hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcc-ccce
Confidence            344555444558999999999999999998788888999999999999999999999999999999999988663 2333


Q ss_pred             c-CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEE----eecCCeeEEEEecCCCE-EEEEECCCcEEEEECC
Q 047260          589 T-GHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTH----ITKGGTAQVRFQPRIGQ-LLAAASDKVVSIFDIE  662 (784)
Q Consensus       589 ~-~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~----~~~~~v~~v~fsp~~~~-Ll~~s~Dg~I~IwDl~  662 (784)
                      . +....|.-+.|++..+.+|.+++.+|.|.+||+.....+.    .|..+...|+|+|.... |++.+.|+.|.+||.+
T Consensus       160 ~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~  239 (673)
T KOG4378|consen  160 TIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIR  239 (673)
T ss_pred             ecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecc
Confidence            3 3345577999999999999999999999999998765543    45578888999997665 5667889999999999


Q ss_pred             CCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeC-CeEEEEeCCCC-ceEEEeccCCCceEEEEEecCC
Q 047260          663 TDRQTHSLQGHAELVNYICWDTNGDYLASVSQ-NLVKVWSMASG-ECIQELSSNGNQFHSCVFHPSY  727 (784)
Q Consensus       663 t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsd-d~I~IwDl~t~-~~i~~l~~~~~~I~sl~fspdg  727 (784)
                      ..+....+. ...+...++|.++|.+|+.|.. +.|..||++.. .++..+..|...|++++|-|..
T Consensus       240 s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  240 SQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             cccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence            877766665 5678899999999999999985 49999999965 6788899999999999998764

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.76  E-value=1.6e-17  Score=180.31  Aligned_cols=261  Identities=19%  Similarity=0.239  Sum_probs=196.5

Q ss_pred             CCCCcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEE
Q 047260          436 GTGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHF  515 (784)
Q Consensus       436 ~~~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~f  515 (784)
                      .+..++.+..|.+ ....+.+++.|+.+.+|+..+.                  .......+..+.+|++|.++|.|+++
T Consensus       292 s~~d~ir~l~~~~-sep~lit~sed~~lk~WnLqk~------------------~~s~~~~~epi~tfraH~gPVl~v~v  352 (577)
T KOG0642|consen  292 SHDDCIRALAFHP-SEPVLITASEDGTLKLWNLQKA------------------KKSAEKDVEPILTFRAHEGPVLCVVV  352 (577)
T ss_pred             cchhhhhhhhcCC-CCCeEEEeccccchhhhhhccc------------------CCccccceeeeEEEecccCceEEEEe
Confidence            3444455556644 4444457999999999987332                  23445677899999999999999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEECCC----------CceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCccee
Q 047260          516 SSDGKLLASSGHDRKVVLWNMDT----------LQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCS  585 (784)
Q Consensus       516 spdg~~Lasgs~Dg~I~IWd~~t----------~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~  585 (784)
                      .+++..+++|+.||+|+.|++..          ......+.+|.+.|+.+++++....|++|+.||+|++|+......+.
T Consensus       353 ~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~  432 (577)
T KOG0642|consen  353 PSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCT  432 (577)
T ss_pred             cCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccc
Confidence            99999999999999999996541          13445677999999999999988899999999999999987655322


Q ss_pred             eeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec----------CCeeEEEEecCCCEEEEEECCCc
Q 047260          586 QAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK----------GGTAQVRFQPRIGQLLAAASDKV  655 (784)
Q Consensus       586 ~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~----------~~v~~v~fsp~~~~Ll~~s~Dg~  655 (784)
                      .......+...++++-.....+.++...-+.--+++......+..+.          ..+..+.++|.....+++..|+.
T Consensus       433 f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~  512 (577)
T KOG0642|consen  433 FGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRS  512 (577)
T ss_pred             cCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCc
Confidence            22222223445666654443333333333444444444443333333          34567888999999999999999


Q ss_pred             EEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCC
Q 047260          656 VSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNG  715 (784)
Q Consensus       656 I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~  715 (784)
                      |+++|..++++++....|...++++++.|+|-+|++++.+ .|++|.+....|+.....|.
T Consensus       513 Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r  573 (577)
T KOG0642|consen  513 IRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR  573 (577)
T ss_pred             eecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeecccccc
Confidence            9999999999999999999999999999999999999965 99999998888877776553

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.76  E-value=1.5e-15  Score=166.28  Aligned_cols=265  Identities=12%  Similarity=0.137  Sum_probs=183.4

Q ss_pred             EeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCCCEEEEEe-CCCeEE
Q 047260          454 ADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSG-HDRKVV  532 (784)
Q Consensus       454 l~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs-~Dg~I~  532 (784)
                      ..+...|+.|.+|+....+                       .+..+..+. +.+....++++|++++|++++ .++.|.
T Consensus         5 y~~~~~~~~I~~~~~~~~g-----------------------~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~   60 (330)
T PRK11028          5 YIASPESQQIHVWNLNHEG-----------------------ALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVL   60 (330)
T ss_pred             EEEcCCCCCEEEEEECCCC-----------------------ceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEE
Confidence            3445678889999773221                       112333333 345677899999999887764 578899


Q ss_pred             EEECC-CCce--eeecCCCCCCeEEEEEccCCCEEEEEeC-CCeEEEEcCCCCcce---eeeccCCCCCeEEEEEcCCCC
Q 047260          533 LWNMD-TLQT--ESTPEDHKSVVTDVRFRPNSSQLATASV-DKSVRLWDAANPNFC---SQAYTGHSSPIMSLDFHPKKT  605 (784)
Q Consensus       533 IWd~~-t~~~--~~~l~~h~~~It~i~fspdg~~Latgs~-Dg~I~IWdl~~~~~~---~~~~~~h~~~V~sl~~sp~~~  605 (784)
                      +|+++ +++.  +... ........++|+|++++|++++. ++.|.+|++++....   ...+ .+...+.+++++|++.
T Consensus        61 ~~~~~~~g~l~~~~~~-~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~p~g~  138 (330)
T PRK11028         61 SYRIADDGALTFAAES-PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII-EGLEGCHSANIDPDNR  138 (330)
T ss_pred             EEEECCCCceEEeeee-cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec-cCCCcccEeEeCCCCC
Confidence            99997 3332  2222 23345678999999999988875 889999999743311   1222 2234567789999999


Q ss_pred             cEEEEEeCCCeEEEEeCCCCeeEE--------e-ecCCeeEEEEecCCCEEEEEEC-CCcEEEEECCC--C--eEEEEEe
Q 047260          606 DLFCFCDNDNEIQYWSINPFLCTH--------I-TKGGTAQVRFQPRIGQLLAAAS-DKVVSIFDIET--D--RQTHSLQ  671 (784)
Q Consensus       606 ~ll~sgs~dg~I~iwDl~~~~~~~--------~-~~~~v~~v~fsp~~~~Ll~~s~-Dg~I~IwDl~t--~--~~i~~l~  671 (784)
                      .+++++..++.|.+||+++...+.        . .......+.|+|++++++++.. ++.|.+||+..  +  +.+..+.
T Consensus       139 ~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~  218 (330)
T PRK11028        139 TLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLD  218 (330)
T ss_pred             EEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEe
Confidence            888888889999999997632221        1 1234567899999999999887 89999999973  2  3333333


Q ss_pred             CC------CCCEEEEEEcCCCCEEEEEeC--CeEEEEeCCCCc----eEEEeccCCCceEEEEEecCCCEEEEEEC-CCe
Q 047260          672 GH------AELVNYICWDTNGDYLASVSQ--NLVKVWSMASGE----CIQELSSNGNQFHSCVFHPSYSTLLVVGG-ISS  738 (784)
Q Consensus       672 ~h------~~~V~sl~~spdg~~Lasgsd--d~I~IwDl~t~~----~i~~l~~~~~~I~sl~fspdg~~L~s~s~-dg~  738 (784)
                      .+      ......+.++|++++|+++..  +.|.+|++....    .+..+.. ......+.++|++++|+++.. +++
T Consensus       219 ~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~  297 (330)
T PRK11028        219 MMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHH  297 (330)
T ss_pred             cCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCc
Confidence            21      112346889999999998864  499999986532    2333322 234567899999999998876 789


Q ss_pred             EEEEECC
Q 047260          739 LELWNMA  745 (784)
Q Consensus       739 I~Iwdl~  745 (784)
                      |.+|+++
T Consensus       298 v~v~~~~  304 (330)
T PRK11028        298 ISVYEID  304 (330)
T ss_pred             EEEEEEc
Confidence            9999875

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.76  E-value=2.3e-17  Score=174.61  Aligned_cols=253  Identities=17%  Similarity=0.278  Sum_probs=183.7

Q ss_pred             cCCCceEeccccCCcceeEEeec--CCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCC-CCEEEE
Q 047260          448 EDIDRFADVGSIDENMESLLSHD--GGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSD-GKLLAS  524 (784)
Q Consensus       448 ~~~~~ll~~gS~D~~v~~~~~~~--~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspd-g~~Las  524 (784)
                      ....+++++|.+|..+.+|+..=  .--+...+|........       ..-..-....+|++.|.+++|+.+ ...||+
T Consensus       189 ~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~-------k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaS  261 (463)
T KOG0270|consen  189 GGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKK-------KKGKRSNSASGHTDAVLALSWNRNFRNVLAS  261 (463)
T ss_pred             CCCcceEEEeccCceeEEeccccccccccceeechhhhhhhh-------hhcccccccccchHHHHHHHhccccceeEEe
Confidence            34667899999999999997631  11111112211100000       000011223579999999999885 458999


Q ss_pred             EeCCCeEEEEECCCCceeeecCCCCCCeEEEEEcc-CCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCC
Q 047260          525 SGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRP-NSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPK  603 (784)
Q Consensus       525 gs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fsp-dg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~  603 (784)
                      |+.|.+|++||+.++++..++..|.+.|.++.|+| ...+|++|+.|++|++.|.+.....-..+ ...+.|-.++|.|.
T Consensus       262 gsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w-k~~g~VEkv~w~~~  340 (463)
T KOG0270|consen  262 GSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW-KFDGEVEKVAWDPH  340 (463)
T ss_pred             cCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceE-EeccceEEEEecCC
Confidence            99999999999999999999999999999999999 67799999999999999999644222222 34678999999999


Q ss_pred             CCcEEEEEeCCCeEEEEeCCCC-ee---EEeecCCeeEEEEecCCC-EEEEEECCCcEEEEECCCCeE--EEEEeCCCCC
Q 047260          604 KTDLFCFCDNDNEIQYWSINPF-LC---THITKGGTAQVRFQPRIG-QLLAAASDKVVSIFDIETDRQ--THSLQGHAEL  676 (784)
Q Consensus       604 ~~~ll~sgs~dg~I~iwDl~~~-~~---~~~~~~~v~~v~fsp~~~-~Ll~~s~Dg~I~IwDl~t~~~--i~~l~~h~~~  676 (784)
                      ....++++..||.|+-+|+|.. ++   +..|.++|.++++++... .+.+++.|+.|++|++....+  ++.-.-.-+.
T Consensus       341 se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~r  420 (463)
T KOG0270|consen  341 SENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGR  420 (463)
T ss_pred             CceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccc
Confidence            9999999999999999999964 44   455678999999987654 466777799999999875433  2221112234


Q ss_pred             EEEEEEcCCCCE-EEEEeCC-eEEEEeCCCCceE
Q 047260          677 VNYICWDTNGDY-LASVSQN-LVKVWSMASGECI  708 (784)
Q Consensus       677 V~sl~~spdg~~-Lasgsdd-~I~IwDl~t~~~i  708 (784)
                      ..|.++.|+-.+ ++.|+.. .++|||+.+...+
T Consensus       421 l~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  421 LHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV  454 (463)
T ss_pred             eeecccCCCcceEEEecCccceEEEeecccChhH
Confidence            667777776554 4445544 8999999876544

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=6.3e-18  Score=180.41  Aligned_cols=288  Identities=17%  Similarity=0.327  Sum_probs=225.5

Q ss_pred             ceeEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecC-CCCCCeEEEEEcc--CCCEEEEEeCCCe
Q 047260          496 TFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPE-DHKSVVTDVRFRP--NSSQLATASVDKS  572 (784)
Q Consensus       496 ~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~-~h~~~It~i~fsp--dg~~Latgs~Dg~  572 (784)
                      .+.....|..|.+.|..+.|...|..|++|+.|..|.+||+.+++....+. +|...|..-.|.|  +...|++++.||.
T Consensus       131 r~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgq  210 (559)
T KOG1334|consen  131 RLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQ  210 (559)
T ss_pred             HhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCc
Confidence            344556788999999999999999999999999999999999888777664 7999999889988  4567999999999


Q ss_pred             EEEEcCCCCccee--eeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCee------EEeecC---CeeEEEEe
Q 047260          573 VRLWDAANPNFCS--QAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLC------THITKG---GTAQVRFQ  641 (784)
Q Consensus       573 I~IWdl~~~~~~~--~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~------~~~~~~---~v~~v~fs  641 (784)
                      |++=.+.....+.  +.+..|.++|..++.-|+..+-|.+|+.|+.+.-+|++....      ....+.   ....++..
T Consensus       211 vr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~  290 (559)
T KOG1334|consen  211 VRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVD  290 (559)
T ss_pred             eeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecC
Confidence            9998776544333  445679999999999999999999999999999999985322      211222   45678888


Q ss_pred             cCCC-EEEEEECCCcEEEEECCCCe------EEEEEe------CCCCCEEEEEEcCC-CCEEEEEeCCeEEEEeCCC--C
Q 047260          642 PRIG-QLLAAASDKVVSIFDIETDR------QTHSLQ------GHAELVNYICWDTN-GDYLASVSQNLVKVWSMAS--G  705 (784)
Q Consensus       642 p~~~-~Ll~~s~Dg~I~IwDl~t~~------~i~~l~------~h~~~V~sl~~spd-g~~Lasgsdd~I~IwDl~t--~  705 (784)
                      |... .+++++.|-.+++||.+.-.      .+..+.      .....|+|++++.+ +.+|++..+..|+++.-.-  |
T Consensus       291 P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G  370 (559)
T KOG1334|consen  291 PRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDG  370 (559)
T ss_pred             CCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccC
Confidence            8776 67788889999999987532      122322      23457999999955 5566776677999995432  2


Q ss_pred             ----------ceEEE-eccCCC--ceEEEE-EecCCCEEEEEECCCeEEEEECCCCceE-EecccCCceEEEEEeCCCCE
Q 047260          706 ----------ECIQE-LSSNGN--QFHSCV-FHPSYSTLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGM  770 (784)
Q Consensus       706 ----------~~i~~-l~~~~~--~I~sl~-fspdg~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg~~  770 (784)
                                ..+.. +++|.+  .|..+- |-|...|+++|+.-|.|.||+-.+++.+ .+.+....|+||.-+|--.+
T Consensus       371 ~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~Pv  450 (559)
T KOG1334|consen  371 SEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPV  450 (559)
T ss_pred             CCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCch
Confidence                      12222 666643  466665 5688899999999999999999999888 44455558999999999999


Q ss_pred             EEEEECCCcEEEe
Q 047260          771 VASASHDSSVKLW  783 (784)
Q Consensus       771 LaSgs~DG~V~IW  783 (784)
                      ||+++-|..||||
T Consensus       451 LAsSGid~DVKIW  463 (559)
T KOG1334|consen  451 LASSGIDHDVKIW  463 (559)
T ss_pred             hhccCCccceeee
Confidence            9999999999999

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.74  E-value=8.7e-17  Score=162.02  Aligned_cols=233  Identities=18%  Similarity=0.328  Sum_probs=176.9

Q ss_pred             cCCCceEEEEEcCCCC-----EEEEEeCCCeEEEEECCCCcee----ee-----cCCCCCCeEEEEEcc-CCCEEEEEeC
Q 047260          505 SRNSKVTCCHFSSDGK-----LLASSGHDRKVVLWNMDTLQTE----ST-----PEDHKSVVTDVRFRP-NSSQLATASV  569 (784)
Q Consensus       505 ~H~~~V~~l~fspdg~-----~Lasgs~Dg~I~IWd~~t~~~~----~~-----l~~h~~~It~i~fsp-dg~~Latgs~  569 (784)
                      .|.-+++.+-|.|+.+     +|||++  ..+|+|.+...+..    ..     -..+..++++..|+. +-++|.++|-
T Consensus        94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi  171 (364)
T KOG0290|consen   94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI  171 (364)
T ss_pred             CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence            5888999999999763     566654  35999998732111    11     135678999999998 7889999999


Q ss_pred             CCeEEEEcCCCCc--ceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEee-c-----CCeeEEEEe
Q 047260          570 DKSVRLWDAANPN--FCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHIT-K-----GGTAQVRFQ  641 (784)
Q Consensus       570 Dg~I~IWdl~~~~--~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~-~-----~~v~~v~fs  641 (784)
                      |-++.|||++++.  .+...+..|..+|..|+|...+..+|++++.||.|++||++......+. +     .+...++|+
T Consensus       172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswn  251 (364)
T KOG0290|consen  172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWN  251 (364)
T ss_pred             cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccC
Confidence            9999999999853  3566778999999999999999999999999999999999975443322 2     345667888


Q ss_pred             cCCCE-EEEEEC-CCcEEEEECCCC-eEEEEEeCCCCCEEEEEEcCC-CCEEEEEeCC-eEEEEeCCCC------ceEEE
Q 047260          642 PRIGQ-LLAAAS-DKVVSIFDIETD-RQTHSLQGHAELVNYICWDTN-GDYLASVSQN-LVKVWSMASG------ECIQE  710 (784)
Q Consensus       642 p~~~~-Ll~~s~-Dg~I~IwDl~t~-~~i~~l~~h~~~V~sl~~spd-g~~Lasgsdd-~I~IwDl~t~------~~i~~  710 (784)
                      +.... +++-.. ...|.|.|++.. .++..+.+|.+.|+.|+|.|. ...|++++|| .+.|||+..-      .++..
T Consensus       252 kqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPila  331 (364)
T KOG0290|consen  252 KQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILA  331 (364)
T ss_pred             cCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhh
Confidence            76654 444444 478999999975 678899999999999999995 5678888888 8999999753      22333


Q ss_pred             eccCCCceEEEEEecCC-CEEEEEECCCeEEE
Q 047260          711 LSSNGNQFHSCVFHPSY-STLLVVGGISSLEL  741 (784)
Q Consensus       711 l~~~~~~I~sl~fspdg-~~L~s~s~dg~I~I  741 (784)
                      +. .+..|+.+.|++.. .+|+++.. +++.|
T Consensus       332 y~-a~~EVNqi~Ws~~~~Dwiai~~~-kklei  361 (364)
T KOG0290|consen  332 YT-AGGEVNQIQWSSSQPDWIAICFG-KKLEI  361 (364)
T ss_pred             hh-ccceeeeeeecccCCCEEEEEec-CeeeE
Confidence            33 56789999999654 45555544 44444

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.74  E-value=5.2e-16  Score=158.43  Aligned_cols=276  Identities=17%  Similarity=0.241  Sum_probs=203.0

Q ss_pred             ccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeec-CCCceEEEEEc-------
Q 047260          445 NLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRS-RNSKVTCCHFS-------  516 (784)
Q Consensus       445 ~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~-H~~~V~~l~fs-------  516 (784)
                      ...+|..-+| +-+-|..+.+|....+.-...              ......+.+..+++- ....|...+|-       
T Consensus        56 kWSPDGSciL-~~sedn~l~~~nlP~dlys~~--------------~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~q  120 (406)
T KOG2919|consen   56 KWSPDGSCIL-SLSEDNCLNCWNLPFDLYSKK--------------ADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQ  120 (406)
T ss_pred             eeCCCCceEE-eecccCeeeEEecChhhcccC--------------CCCccccccceeEEeccCCEEEEEEeeeccccCC
Confidence            3345666665 577888999997754431111              111222222222222 34558888886       


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCceeeecCC--CCC---CeEEEEEccCCCEEEEEeCCCeEEEEcCC-CCccee-ee--
Q 047260          517 SDGKLLASSGHDRKVVLWNMDTLQTESTPED--HKS---VVTDVRFRPNSSQLATASVDKSVRLWDAA-NPNFCS-QA--  587 (784)
Q Consensus       517 pdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~--h~~---~It~i~fspdg~~Latgs~Dg~I~IWdl~-~~~~~~-~~--  587 (784)
                      |+..++|+.+.+.-|++||.-+++....+..  |-+   ...+++|+|||..|++| ....|+|||+. .+..+. ..  
T Consensus       121 P~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~  199 (406)
T KOG2919|consen  121 PSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTV  199 (406)
T ss_pred             CccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhh
Confidence            5778999999999999999999998887753  333   45689999999999887 56799999994 333221 11  


Q ss_pred             ---ccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe---eEEeecCCeeEEEEecCCCEEEEEEC-CCcEEEEE
Q 047260          588 ---YTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFL---CTHITKGGTAQVRFQPRIGQLLAAAS-DKVVSIFD  660 (784)
Q Consensus       588 ---~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~---~~~~~~~~v~~v~fsp~~~~Ll~~s~-Dg~I~IwD  660 (784)
                         ..+..+.|.|++|+|.....++.++....+-||.-....   .+..+.+.|+.++|.++|++|++|+. |..|..||
T Consensus       200 ~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WD  279 (406)
T KOG2919|consen  200 TKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWD  279 (406)
T ss_pred             hcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEe
Confidence               123467899999999988899999988888887665443   34456689999999999999999998 78999999


Q ss_pred             CCCC-eEEEEEeCCCC-CEEE--EEEcCCCCEEEEEe-CCeEEEEeCCC-CceEEEeccCCCceEEEEEecCCCEEEEEE
Q 047260          661 IETD-RQTHSLQGHAE-LVNY--ICWDTNGDYLASVS-QNLVKVWSMAS-GECIQELSSNGNQFHSCVFHPSYSTLLVVG  734 (784)
Q Consensus       661 l~t~-~~i~~l~~h~~-~V~s--l~~spdg~~Lasgs-dd~I~IwDl~t-~~~i~~l~~~~~~I~sl~fspdg~~L~s~s  734 (784)
                      ++.. .++..+..|.+ .-..  ....|++++|++|+ ++.|++||+++ +..+..+..+...++.+.++|--..+++++
T Consensus       280 iR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatss  359 (406)
T KOG2919|consen  280 IRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSS  359 (406)
T ss_pred             ehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeecc
Confidence            9875 56666766655 2223  34568999999996 56999999998 777888888899999999999977676666


Q ss_pred             CC
Q 047260          735 GI  736 (784)
Q Consensus       735 ~d  736 (784)
                      ..
T Consensus       360 Gq  361 (406)
T KOG2919|consen  360 GQ  361 (406)
T ss_pred             Cc
Confidence            54

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.74  E-value=3e-16  Score=182.50  Aligned_cols=288  Identities=19%  Similarity=0.228  Sum_probs=210.4

Q ss_pred             eeEEeEeecCCCceEEEEEcCCC-CEEEEEeCCCeEEEEECCCC-------ceeeecCCCCCCeEEEEEccCCCEEEEEe
Q 047260          497 FCEVGCIRSRNSKVTCCHFSSDG-KLLASSGHDRKVVLWNMDTL-------QTESTPEDHKSVVTDVRFRPNSSQLATAS  568 (784)
Q Consensus       497 ~~~i~~l~~H~~~V~~l~fspdg-~~Lasgs~Dg~I~IWd~~t~-------~~~~~l~~h~~~It~i~fspdg~~Latgs  568 (784)
                      ...+..+..|...|..++.+++. .+|++|+.||+|+|||....       +...++......+.++.+.+.+..+|+++
T Consensus      1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t 1117 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVST 1117 (1431)
T ss_pred             ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEc
Confidence            35678889999999999998855 89999999999999998632       22233333567899999999999999999


Q ss_pred             CCCeEEEEcCCCCcc------eeeeccC-CCCCeE-EEEEcCCCC-cEEEEEeCCCeEEEEeCCCCeeEEee-----cCC
Q 047260          569 VDKSVRLWDAANPNF------CSQAYTG-HSSPIM-SLDFHPKKT-DLFCFCDNDNEIQYWSINPFLCTHIT-----KGG  634 (784)
Q Consensus       569 ~Dg~I~IWdl~~~~~------~~~~~~~-h~~~V~-sl~~sp~~~-~ll~sgs~dg~I~iwDl~~~~~~~~~-----~~~  634 (784)
                      .||.|++.+++-.+.      ..+.... ..+.+. .-+|..... ..++.+...+.|..||++........     .+-
T Consensus      1118 ~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~ 1197 (1431)
T KOG1240|consen 1118 KDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGL 1197 (1431)
T ss_pred             CCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccc
Confidence            999999999875221      1111111 122333 334443333 37778888999999999875544333     377


Q ss_pred             eeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEe-CCCCCEEEEEEcCC---CCEEEEEeC---CeEEEEeCCCCce
Q 047260          635 TAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQ-GHAELVNYICWDTN---GDYLASVSQ---NLVKVWSMASGEC  707 (784)
Q Consensus       635 v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~-~h~~~V~sl~~spd---g~~Lasgsd---d~I~IwDl~t~~~  707 (784)
                      +++++.+|.+.++++|+..|.+.+||++-+.++..+. ++..+|..++.+|-   ....++++.   +.|.+|++.+|.+
T Consensus      1198 vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1198 VTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLR 1277 (1431)
T ss_pred             eeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcc
Confidence            8999999999999999999999999999998888875 35568888877763   345555443   3999999999876


Q ss_pred             EEEeccC-------------------CCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE------------------
Q 047260          708 IQELSSN-------------------GNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM------------------  750 (784)
Q Consensus       708 i~~l~~~-------------------~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~------------------  750 (784)
                      -..+...                   .-....+.+...+..+++++.|..|+.||....+..                  
T Consensus      1278 ~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~ 1357 (1431)
T KOG1240|consen 1278 QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESY 1357 (1431)
T ss_pred             eEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccchhc
Confidence            6655332                   111234555556678999999999999997542211                  


Q ss_pred             ---------------------------------------EecccCCceEEEEEeCCC-CEEEEEECCCcEEEeC
Q 047260          751 ---------------------------------------TIAAHENIISALAQSPVT-GMVASASHDSSVKLWK  784 (784)
Q Consensus       751 ---------------------------------------~~~~h~~~V~slafspdg-~~LaSgs~DG~V~IWd  784 (784)
                                                             ....|..+|+++++.... .+|++++.||.|+||+
T Consensus      1358 ~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1358 DLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred             cccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence                                                   012377788888887654 5899999999999996

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.74  E-value=1.3e-16  Score=160.68  Aligned_cols=246  Identities=21%  Similarity=0.326  Sum_probs=178.9

Q ss_pred             eEeecCCCceEEEEEcC-CCCEEEEEeCC-------CeEEEEECCC---------CceeeecC-CCCCCeEEEEEccCCC
Q 047260          501 GCIRSRNSKVTCCHFSS-DGKLLASSGHD-------RKVVLWNMDT---------LQTESTPE-DHKSVVTDVRFRPNSS  562 (784)
Q Consensus       501 ~~l~~H~~~V~~l~fsp-dg~~Lasgs~D-------g~I~IWd~~t---------~~~~~~l~-~h~~~It~i~fspdg~  562 (784)
                      +.|..|.+.|+.++-+| |.++|+|+..+       ..+.||.+..         .+.+..+. .+-+.|.||.|.|++.
T Consensus        57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~  136 (370)
T KOG1007|consen   57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD  136 (370)
T ss_pred             hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence            34667899999999999 55677776542       2478998863         23344443 4567999999999999


Q ss_pred             EEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCCeeEEEEec
Q 047260          563 QLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQP  642 (784)
Q Consensus       563 ~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v~~v~fsp  642 (784)
                      .|++-. |..|.+|++.........+..                   +++..                .....++-+|+|
T Consensus       137 klasm~-dn~i~l~~l~ess~~vaev~s-------------------s~s~e----------------~~~~ftsg~Wsp  180 (370)
T KOG1007|consen  137 KLASMD-DNNIVLWSLDESSKIVAEVLS-------------------SESAE----------------MRHSFTSGAWSP  180 (370)
T ss_pred             eeEEec-cCceEEEEcccCcchheeecc-------------------ccccc----------------ccceecccccCC
Confidence            988875 889999999876532221110                   00000                011122334555


Q ss_pred             -CCCEEEEEECCCcEEEEECCCCeEEEEEe-CCCCCEEEEEEcCCCC-EEEEEeCC-eEEEEeCCCC-ceEEEeccCCCc
Q 047260          643 -RIGQLLAAASDKVVSIFDIETDRQTHSLQ-GHAELVNYICWDTNGD-YLASVSQN-LVKVWSMASG-ECIQELSSNGNQ  717 (784)
Q Consensus       643 -~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~-~h~~~V~sl~~spdg~-~Lasgsdd-~I~IwDl~t~-~~i~~l~~~~~~  717 (784)
                       ....-++...|+++..||+++.+....+. .|...|..+.|+|+-. +|++|+|+ .|+|||.+.- .++.++.+|...
T Consensus       181 HHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHW  260 (370)
T KOG1007|consen  181 HHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHW  260 (370)
T ss_pred             CCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceE
Confidence             23445566678999999999887777765 4888999999999866 56677766 9999999864 689999999999


Q ss_pred             eEEEEEecCC-CEEEEEECCCeEEEEECCC------------------------------CceEEecccCCceEEEEEeC
Q 047260          718 FHSCVFHPSY-STLLVVGGISSLELWNMAE------------------------------NKSMTIAAHENIISALAQSP  766 (784)
Q Consensus       718 I~sl~fspdg-~~L~s~s~dg~I~Iwdl~~------------------------------~~~~~~~~h~~~V~slafsp  766 (784)
                      |.++.|+|.. ..|++++.|..|.+|....                              +...++..|++.|.+++|+.
T Consensus       261 vW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSs  340 (370)
T KOG1007|consen  261 VWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSS  340 (370)
T ss_pred             EEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeecc
Confidence            9999999975 4678888999999985432                              11125667999999999998


Q ss_pred             CCC-EEEEEECCCcEEE
Q 047260          767 VTG-MVASASHDSSVKL  782 (784)
Q Consensus       767 dg~-~LaSgs~DG~V~I  782 (784)
                      -.. +||+-+.||+|.|
T Consensus       341 adPWiFASLSYDGRviI  357 (370)
T KOG1007|consen  341 ADPWIFASLSYDGRVII  357 (370)
T ss_pred             CCCeeEEEeccCceEEe
Confidence            666 6788899999876

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.73  E-value=9.6e-17  Score=164.24  Aligned_cols=236  Identities=20%  Similarity=0.359  Sum_probs=179.3

Q ss_pred             CCCceEEEEEcCC----CCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccC-CCEEEEEeCCCeEEEEcCCC
Q 047260          506 RNSKVTCCHFSSD----GKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPN-SSQLATASVDKSVRLWDAAN  580 (784)
Q Consensus       506 H~~~V~~l~fspd----g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspd-g~~Latgs~Dg~I~IWdl~~  580 (784)
                      |......|+|+-|    ..+||.|+.-|.|+|.|+.+++....+.+|...|+.|.|+|+ ..+|+++|.|.+||+|++.+
T Consensus        88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~  167 (385)
T KOG1034|consen   88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT  167 (385)
T ss_pred             CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC
Confidence            6666777888763    348999999999999999999999999999999999999994 57899999999999999998


Q ss_pred             Ccceeeec---cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEE----------------------------
Q 047260          581 PNFCSQAY---TGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTH----------------------------  629 (784)
Q Consensus       581 ~~~~~~~~---~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~----------------------------  629 (784)
                      .. ++..+   .+|.+.|.+++|++++. .+++|+.|..|++|+++..+...                            
T Consensus       168 ~~-Cv~VfGG~egHrdeVLSvD~~~~gd-~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fs  245 (385)
T KOG1034|consen  168 DV-CVAVFGGVEGHRDEVLSVDFSLDGD-RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFS  245 (385)
T ss_pred             Ce-EEEEecccccccCcEEEEEEcCCCC-eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccc
Confidence            66 55554   47999999999999998 88999999999999997311110                            


Q ss_pred             ---eecCCeeEEEEecCCCEEEEEECCCcEEEEEC-CCCeE-------------EEEEeCCCCCEEEE--EEcCCCCEEE
Q 047260          630 ---ITKGGTAQVRFQPRIGQLLAAASDKVVSIFDI-ETDRQ-------------THSLQGHAELVNYI--CWDTNGDYLA  690 (784)
Q Consensus       630 ---~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl-~t~~~-------------i~~l~~h~~~V~sl--~~spdg~~La  690 (784)
                         .+...|.|+.|  -|+++++-+.++.|..|.. +-++.             +..+.-....|.-+  +|++-++.||
T Consensus       246 t~diHrnyVDCvrw--~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la  323 (385)
T KOG1034|consen  246 TTDIHRNYVDCVRW--FGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLA  323 (385)
T ss_pred             ccccccchHHHHHH--HhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHh
Confidence               01112222222  2467888888999999987 22222             22233333444444  4567788899


Q ss_pred             EEeCC-eEEEEeCCCCceE--EEec--cCCCceEEEEEecCCCEEEEEECCCeEEEEECC
Q 047260          691 SVSQN-LVKVWSMASGECI--QELS--SNGNQFHSCVFHPSYSTLLVVGGISSLELWNMA  745 (784)
Q Consensus       691 sgsdd-~I~IwDl~t~~~i--~~l~--~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~  745 (784)
                      .|... .|.+||++..++.  .++.  .....|...+|+.|+..|+...+|++|.-||..
T Consensus       324 ~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  324 LGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             hccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence            88855 9999999986552  2222  235678999999999999999999999999854

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.73  E-value=3.5e-16  Score=163.32  Aligned_cols=249  Identities=16%  Similarity=0.241  Sum_probs=186.7

Q ss_pred             CCCEEEEE---eCCCeEEEEECC-CCce---eeecCCCCCCeEEEEEcc-CCCEEEEEeCCCeEEEEcCCCCc------c
Q 047260          518 DGKLLASS---GHDRKVVLWNMD-TLQT---ESTPEDHKSVVTDVRFRP-NSSQLATASVDKSVRLWDAANPN------F  583 (784)
Q Consensus       518 dg~~Lasg---s~Dg~I~IWd~~-t~~~---~~~l~~h~~~It~i~fsp-dg~~Latgs~Dg~I~IWdl~~~~------~  583 (784)
                      +.++||+.   +..|...|.-+. +|+.   .-.+.+|+++|.+++|+| +...||+||.|.+|.||.+..+.      .
T Consensus        43 NPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lte  122 (472)
T KOG0303|consen   43 NPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTE  122 (472)
T ss_pred             CCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCccc
Confidence            45566653   223344444432 3332   234568999999999999 67789999999999999987543      2


Q ss_pred             eeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEee--cCCeeEEEEecCCCEEEEEECCCcEEEEEC
Q 047260          584 CSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHIT--KGGTAQVRFQPRIGQLLAAASDKVVSIFDI  661 (784)
Q Consensus       584 ~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~--~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl  661 (784)
                      .+..+.+|...|-.+.|+|.-.++|++++.|..|.+|++.+++.+..+  ..-|.++.|+.+|..|++++.|+.|+|||.
T Consensus       123 pvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dp  202 (472)
T KOG0303|consen  123 PVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDP  202 (472)
T ss_pred             ceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcC
Confidence            466788999999999999999999999999999999999988765544  467889999999999999999999999999


Q ss_pred             CCCeEEEEEeCCCC-CEEEEEEcCCCCEEEEEe----CCeEEEEeCCCCc---eEEEeccCCCceEEEEEecCCCEEEEE
Q 047260          662 ETDRQTHSLQGHAE-LVNYICWDTNGDYLASVS----QNLVKVWSMASGE---CIQELSSNGNQFHSCVFHPSYSTLLVV  733 (784)
Q Consensus       662 ~t~~~i~~l~~h~~-~V~sl~~spdg~~Lasgs----dd~I~IwDl~t~~---~i~~l~~~~~~I~sl~fspdg~~L~s~  733 (784)
                      ++++.+..-.+|.+ .-..+.|-.+|.++.+|.    +..+.+||..+-+   .+.++.. .+.|.---|.++.+.++.+
T Consensus       203 r~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~  281 (472)
T KOG0303|consen  203 RRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTSIVYLC  281 (472)
T ss_pred             CCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEecc-CCceEEeeecCCCCEEEEE
Confidence            99999988877876 345567888899776665    3489999987643   2334433 3556666788888887665


Q ss_pred             E-CCCeEEEEECCCCceE----EecccCCceEEEEEeCC
Q 047260          734 G-GISSLELWNMAENKSM----TIAAHENIISALAQSPV  767 (784)
Q Consensus       734 s-~dg~I~Iwdl~~~~~~----~~~~h~~~V~slafspd  767 (784)
                      + +|+.|+.|.+......    .......+=..+.|-|.
T Consensus       282 GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPK  320 (472)
T KOG0303|consen  282 GKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPK  320 (472)
T ss_pred             ecCCcceEEEEecCCCceeEEecccccCCcccccccccc
Confidence            5 5789999999887643    12233344445555553

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.72  E-value=1.8e-15  Score=172.17  Aligned_cols=256  Identities=17%  Similarity=0.278  Sum_probs=190.5

Q ss_pred             CeEEEEECCCCceeeecCCCCCCeEEEEEcc-CCCEEEEEeCCCeEEEEcCCCCcce-----eeeccCCCCCeEEEEEcC
Q 047260          529 RKVVLWNMDTLQTESTPEDHKSVVTDVRFRP-NSSQLATASVDKSVRLWDAANPNFC-----SQAYTGHSSPIMSLDFHP  602 (784)
Q Consensus       529 g~I~IWd~~t~~~~~~l~~h~~~It~i~fsp-dg~~Latgs~Dg~I~IWdl~~~~~~-----~~~~~~h~~~V~sl~~sp  602 (784)
                      +.+.||+++..............|+|+.|+| +..+++.|+.+|.|.+||++.....     ......|..+|+.+.|..
T Consensus       222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~  301 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ  301 (555)
T ss_pred             ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence            4799999987633333335678899999999 7778899999999999999876531     122346899999999976


Q ss_pred             CCC-cEEEEEeCCCeEEEEeCCCCee--------EE-------eecCCeeEEEEecCC-CEEEEEECCCcEEEEECCCC-
Q 047260          603 KKT-DLFCFCDNDNEIQYWSINPFLC--------TH-------ITKGGTAQVRFQPRI-GQLLAAASDKVVSIFDIETD-  664 (784)
Q Consensus       603 ~~~-~ll~sgs~dg~I~iwDl~~~~~--------~~-------~~~~~v~~v~fsp~~-~~Ll~~s~Dg~I~IwDl~t~-  664 (784)
                      +.. .-|++++.||.|..|+++....        ..       .....++++.|.+.. ..+++|+.+|.|..-+.... 
T Consensus       302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~  381 (555)
T KOG1587|consen  302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYT  381 (555)
T ss_pred             cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCc
Confidence            533 3466777799999999874322        01       112456788887755 45777888899887433222 


Q ss_pred             --e-----EEEEEeCCCCCEEEEEEcCCCC-EEEEEeCCeEEEEeCC-CCceEEEeccCCCceEEEEEecCCCE-EEEEE
Q 047260          665 --R-----QTHSLQGHAELVNYICWDTNGD-YLASVSQNLVKVWSMA-SGECIQELSSNGNQFHSCVFHPSYST-LLVVG  734 (784)
Q Consensus       665 --~-----~i~~l~~h~~~V~sl~~spdg~-~Lasgsdd~I~IwDl~-t~~~i~~l~~~~~~I~sl~fspdg~~-L~s~s  734 (784)
                        .     ....+..|.++|+++.++|-+. ++.+++|.+|+||... ...++..+..+...|++++|+|.... |+++.
T Consensus       382 ~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d  461 (555)
T KOG1587|consen  382 PAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVD  461 (555)
T ss_pred             ccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEc
Confidence              1     1234456899999999999665 4555556699999988 67788888888888999999999866 55555


Q ss_pred             CCCeEEEEECCCCceE---EecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          735 GISSLELWNMAENKSM---TIAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       735 ~dg~I~Iwdl~~~~~~---~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      .||.|.|||+......   ....+....+.+.|++.+++|++|+..|.|.+|+
T Consensus       462 ~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~  514 (555)
T KOG1587|consen  462 GDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILK  514 (555)
T ss_pred             CCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEE
Confidence            6899999999765433   3334466678888999999999999999999985

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=1.7e-15  Score=172.42  Aligned_cols=276  Identities=20%  Similarity=0.359  Sum_probs=206.2

Q ss_pred             cCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCC----CceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCC
Q 047260          505 SRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDT----LQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAAN  580 (784)
Q Consensus       505 ~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t----~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~  580 (784)
                      .|.-.++|.++||+++++|+|..||.|.||.--.    ......+.-|...|++++|+++|.+|++|+..|.+.+|.+++
T Consensus       203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T  282 (792)
T KOG1963|consen  203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET  282 (792)
T ss_pred             hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence            4777799999999999999999999999996432    223345667899999999999999999999999999999998


Q ss_pred             CcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEe--------------ecCCeeEEEEecCCCE
Q 047260          581 PNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHI--------------TKGGTAQVRFQPRIGQ  646 (784)
Q Consensus       581 ~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~--------------~~~~v~~v~fsp~~~~  646 (784)
                      ++  ...+..-.++|..+.++||+. +++.+..|..|.+...........              ..+-.+.++++|.-+.
T Consensus       283 ~~--kqfLPRLgs~I~~i~vS~ds~-~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~  359 (792)
T KOG1963|consen  283 GK--KQFLPRLGSPILHIVVSPDSD-LYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNS  359 (792)
T ss_pred             CC--cccccccCCeeEEEEEcCCCC-eEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCc
Confidence            77  555666788999999999988 555566688888887643221111              1233566889998888


Q ss_pred             EEEEECCCcEEEEECCCCeEEEEEeC-----CC------CCEEEEEEcCCCCEEEEEe---------CC--eEEEEeCCC
Q 047260          647 LLAAASDKVVSIFDIETDRQTHSLQG-----HA------ELVNYICWDTNGDYLASVS---------QN--LVKVWSMAS  704 (784)
Q Consensus       647 Ll~~s~Dg~I~IwDl~t~~~i~~l~~-----h~------~~V~sl~~spdg~~Lasgs---------dd--~I~IwDl~t  704 (784)
                      ++..+..|.|.+||+.+.+.+..+..     +.      ..++.++.+..|.++++..         ++  .+++|-...
T Consensus       360 ~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~  439 (792)
T KOG1963|consen  360 LVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNP  439 (792)
T ss_pred             eeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcC
Confidence            99999999999999998877666531     22      2467777788899999874         33  789997655


Q ss_pred             Cc----eEEEe-ccCCCceEEEEEe-cCCC-EEEEEECCCeEEEEECCCCc----------eE-EecccCCceEEEEEeC
Q 047260          705 GE----CIQEL-SSNGNQFHSCVFH-PSYS-TLLVVGGISSLELWNMAENK----------SM-TIAAHENIISALAQSP  766 (784)
Q Consensus       705 ~~----~i~~l-~~~~~~I~sl~fs-pdg~-~L~s~s~dg~I~Iwdl~~~~----------~~-~~~~h~~~V~slafsp  766 (784)
                      ..    +...+ ..|+..+...++. +... ..++++.||.++||-+.+.+          +. .-..|..++++++|+.
T Consensus       440 ~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~  519 (792)
T KOG1963|consen  440 NSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQ  519 (792)
T ss_pred             CcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcC
Confidence            43    22222 3566655555544 3333 78999999999999884322          11 1124788999999999


Q ss_pred             CCCEEEEEECCCcEEEeC
Q 047260          767 VTGMVASASHDSSVKLWK  784 (784)
Q Consensus       767 dg~~LaSgs~DG~V~IWd  784 (784)
                      ||.+|+ ++.|+.|.|||
T Consensus       520 dGslla-~s~~~~Itiwd  536 (792)
T KOG1963|consen  520 DGSLLA-VSFDDTITIWD  536 (792)
T ss_pred             CCcEEE-EecCCEEEEec
Confidence            995555 56788999997

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.71  E-value=1.2e-14  Score=151.22  Aligned_cols=231  Identities=15%  Similarity=0.292  Sum_probs=179.5

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCC--eEEEEcCCCCcce
Q 047260          507 NSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDK--SVRLWDAANPNFC  584 (784)
Q Consensus       507 ~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg--~I~IWdl~~~~~~  584 (784)
                      ...|..+.|..|...|..|+.|| .++|+.+..............|..+-|+  ..++|..+.+.  .+++++++....+
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~I   81 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTI   81 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCceE
Confidence            34577788999999999999998 7888887655533333334456666676  44666666553  4899998876544


Q ss_pred             eeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecC------CeeEEEEecCCCEEEEEEC--CCcE
Q 047260          585 SQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKG------GTAQVRFQPRIGQLLAAAS--DKVV  656 (784)
Q Consensus       585 ~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~------~v~~v~fsp~~~~Ll~~s~--Dg~I  656 (784)
                      ...+  ...+|.+|.++.+   .++++-.+ .|+|||++..+.++.+..      ++..+.+++.+.+++.-+.  .|.|
T Consensus        82 Ce~~--fpt~IL~VrmNr~---RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV  155 (391)
T KOG2110|consen   82 CEIF--FPTSILAVRMNRK---RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDV  155 (391)
T ss_pred             EEEe--cCCceEEEEEccc---eEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceE
Confidence            3333  3467999999755   34455533 499999999888876652      3455556666667776554  6999


Q ss_pred             EEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC--eEEEEeCCCCceEEEeccC--CCceEEEEEecCCCEEEE
Q 047260          657 SIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN--LVKVWSMASGECIQELSSN--GNQFHSCVFHPSYSTLLV  732 (784)
Q Consensus       657 ~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd--~I~IwDl~t~~~i~~l~~~--~~~I~sl~fspdg~~L~s  732 (784)
                      .+||+.+-+.+..+..|++.+.+++|+++|.+||++++.  .|||+.+.+|..+.+|...  ...|.+++|+|++.+|.+
T Consensus       156 ~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~  235 (391)
T KOG2110|consen  156 VLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAA  235 (391)
T ss_pred             EEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEE
Confidence            999999999999999999999999999999999999976  8999999999999999754  346789999999999999


Q ss_pred             EECCCeEEEEECCC
Q 047260          733 VGGISSLELWNMAE  746 (784)
Q Consensus       733 ~s~dg~I~Iwdl~~  746 (784)
                      .+..++|+||.++.
T Consensus       236 sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  236 SSNTETVHIFKLEK  249 (391)
T ss_pred             ecCCCeEEEEEecc
Confidence            99999999998764

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.71  E-value=9.1e-16  Score=175.94  Aligned_cols=277  Identities=15%  Similarity=0.216  Sum_probs=205.0

Q ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCC---CCeEEEEEcc--CCCEEEEEeCCCeEEEEcCCC
Q 047260          506 RNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHK---SVVTDVRFRP--NSSQLATASVDKSVRLWDAAN  580 (784)
Q Consensus       506 H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~---~~It~i~fsp--dg~~Latgs~Dg~I~IWdl~~  580 (784)
                      ....-..+.|+|-...++++...-.|+|||.+.++.+..|..+.   ..|+.+.+..  |..++++|+.||.||||+--.
T Consensus      1063 n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~ 1142 (1387)
T KOG1517|consen 1063 NNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYA 1142 (1387)
T ss_pred             CCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccc
Confidence            34456778899988899999888899999999999888876543   5789998876  567899999999999997432


Q ss_pred             Cc----ceeeecc-------CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec----CCeeEEEE-ecCC
Q 047260          581 PN----FCSQAYT-------GHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK----GGTAQVRF-QPRI  644 (784)
Q Consensus       581 ~~----~~~~~~~-------~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~----~~v~~v~f-sp~~  644 (784)
                      ..    ..+..+.       +..+.-.-++|......++++|+ -..|+|||.....+.....    ..++.+.- ...|
T Consensus      1143 ~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd-~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~g 1221 (1387)
T KOG1517|consen 1143 DKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGD-VRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHG 1221 (1387)
T ss_pred             cccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCC-eeEEEEEecccceeEeecccCCCccceeecccccCC
Confidence            21    1222211       11122245677777666666655 7899999999877776554    23444442 3346


Q ss_pred             CEEEEEECCCcEEEEECCCC---eEEEEEeCCCCC--EEEEEEcCCCCE-EEEEe-CCeEEEEeCCCCceEE--EeccC-
Q 047260          645 GQLLAAASDKVVSIFDIETD---RQTHSLQGHAEL--VNYICWDTNGDY-LASVS-QNLVKVWSMASGECIQ--ELSSN-  714 (784)
Q Consensus       645 ~~Ll~~s~Dg~I~IwDl~t~---~~i~~l~~h~~~--V~sl~~spdg~~-Lasgs-dd~I~IwDl~t~~~i~--~l~~~-  714 (784)
                      +.+++|..||.|++||.+..   ..+...+.|...  |..+.+-+.|-- |++++ +|.|++||++......  ++..| 
T Consensus      1222 n~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~ 1301 (1387)
T KOG1517|consen 1222 NIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHW 1301 (1387)
T ss_pred             ceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeecc
Confidence            88999999999999999875   356677778887  999999886653 77766 6699999999852222  22222 


Q ss_pred             --CCceEEEEEecCCCEEEEEECCCeEEEEECCCCceEEecc-------cCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          715 --GNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIAA-------HENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       715 --~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~~~-------h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                        ++..+++..|+....|++|+. +.|+||++.......+..       ..+.+.|++|+|-.-+||+|+.|..|.||.
T Consensus      1302 ~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1302 EYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred             ccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEee
Confidence              335899999999998888888 999999998766543332       345689999999999999999999999983

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=2.4e-15  Score=148.36  Aligned_cols=224  Identities=16%  Similarity=0.230  Sum_probs=170.7

Q ss_pred             CeEEEEEccCCCEEEEEeCCCeEEEEcCCC---------CcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEe
Q 047260          551 VVTDVRFRPNSSQLATASVDKSVRLWDAAN---------PNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWS  621 (784)
Q Consensus       551 ~It~i~fspdg~~Latgs~Dg~I~IWdl~~---------~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwD  621 (784)
                      .|..-+|+|.+++|++|+.+|.|.++.+.+         ++..+..+.+|+++|..++|+.+   ++++|+ ||.|+-|.
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~---~Lls~g-dG~V~gw~   87 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD---FLLSGG-DGLVYGWE   87 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh---heeecc-CceEEEee
Confidence            456668999999999999999999998863         23344556799999999999833   666666 69999998


Q ss_pred             CCCCeeEEe----------------ecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCC
Q 047260          622 INPFLCTHI----------------TKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTN  685 (784)
Q Consensus       622 l~~~~~~~~----------------~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spd  685 (784)
                      .+.......                .-..|+.+...|..+.++.++.|+.++.||+++++..+.+++|.+.|.++.--..
T Consensus        88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~  167 (325)
T KOG0649|consen   88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA  167 (325)
T ss_pred             ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence            864322100                0135778889999999999999999999999999999999999999999998444


Q ss_pred             CCEEEEEe-CCeEEEEeCCCCceEEEeccC----------CCceEEEEEecCCCEEEEEECCCeEEEEECCCCceEEecc
Q 047260          686 GDYLASVS-QNLVKVWSMASGECIQELSSN----------GNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIAA  754 (784)
Q Consensus       686 g~~Lasgs-dd~I~IwDl~t~~~i~~l~~~----------~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~~~  754 (784)
                      ...+++|+ |++++|||.++++++..+...          ...|-+++.+.+  ++++|+ ...+.+|.++..++.....
T Consensus       168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~ed--WlvCGg-Gp~lslwhLrsse~t~vfp  244 (325)
T KOG0649|consen  168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNED--WLVCGG-GPKLSLWHLRSSESTCVFP  244 (325)
T ss_pred             CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCc--eEEecC-CCceeEEeccCCCceEEEe
Confidence            44455555 559999999999998887532          234555555444  565554 4579999999999988888


Q ss_pred             cCCceEEEEEeCCCCEEEEEECCCcEEEe
Q 047260          755 HENIISALAQSPVTGMVASASHDSSVKLW  783 (784)
Q Consensus       755 h~~~V~slafspdg~~LaSgs~DG~V~IW  783 (784)
                      -..+|..+.|..|  .+++++....|.-|
T Consensus       245 ipa~v~~v~F~~d--~vl~~G~g~~v~~~  271 (325)
T KOG0649|consen  245 IPARVHLVDFVDD--CVLIGGEGNHVQSY  271 (325)
T ss_pred             cccceeEeeeecc--eEEEeccccceeee
Confidence            8888988988754  56666655555544

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.69  E-value=1.9e-15  Score=152.31  Aligned_cols=241  Identities=18%  Similarity=0.308  Sum_probs=156.7

Q ss_pred             CCCCcceeEEeEee-cCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCce-eeec-----CCCCCCeEEEEEcc--CC
Q 047260          491 PTKGFTFCEVGCIR-SRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQT-ESTP-----EDHKSVVTDVRFRP--NS  561 (784)
Q Consensus       491 ~~~~~~~~~i~~l~-~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~-~~~l-----~~h~~~It~i~fsp--dg  561 (784)
                      .+...++..+..|. .+-+.|.|+.|.|++..|++-. |..|.+|++..... +..+     .+|....++-+|+|  ++
T Consensus       106 ~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdg  184 (370)
T KOG1007|consen  106 QSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDG  184 (370)
T ss_pred             ccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCcc
Confidence            34556677777777 6778999999999999998765 88899999987655 3332     24566788899999  77


Q ss_pred             CEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe-eE---EeecCCeeE
Q 047260          562 SQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFL-CT---HITKGGTAQ  637 (784)
Q Consensus       562 ~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~-~~---~~~~~~v~~  637 (784)
                      +.+++. .|+++..||+++.+....+-..|...|..+.|+|+...++++|++||.|++||.+..+ .+   ..+..-+.+
T Consensus       185 nqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~  263 (370)
T KOG1007|consen  185 NQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWA  263 (370)
T ss_pred             ceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEE
Confidence            777776 5789999999987766677778999999999999999999999999999999987432 12   222234556


Q ss_pred             EEEecCCCE-EEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEE-EeCCeEEEEeCCCCceEEEeccCC
Q 047260          638 VRFQPRIGQ-LLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLAS-VSQNLVKVWSMASGECIQELSSNG  715 (784)
Q Consensus       638 v~fsp~~~~-Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Las-gsdd~I~IwDl~t~~~i~~l~~~~  715 (784)
                      |+|+|.... ++++++|..|.+          ........-..|.|..|..-.-. .+...++  -+ ....+.++..|.
T Consensus       264 VRfn~~hdqLiLs~~SDs~V~L----------sca~svSSE~qi~~~~dese~e~~dseer~k--pL-~dg~l~tydehE  330 (370)
T KOG1007|consen  264 VRFNPEHDQLILSGGSDSAVNL----------SCASSVSSEQQIEFEDDESESEDEDSEERVK--PL-QDGQLETYDEHE  330 (370)
T ss_pred             EEecCccceEEEecCCCceeEE----------EeccccccccccccccccccCcchhhHHhcc--cc-cccccccccccc
Confidence            666665433 334444443321          00000000001111111000000 0000111  01 112455778899


Q ss_pred             CceEEEEEecCCCEE-EEEECCCeEEEEECCC
Q 047260          716 NQFHSCVFHPSYSTL-LVVGGISSLELWNMAE  746 (784)
Q Consensus       716 ~~I~sl~fspdg~~L-~s~s~dg~I~Iwdl~~  746 (784)
                      ..|++++|+.-.+++ ++-+.||.+.|=.+..
T Consensus       331 DSVY~~aWSsadPWiFASLSYDGRviIs~V~r  362 (370)
T KOG1007|consen  331 DSVYALAWSSADPWIFASLSYDGRVIISSVPR  362 (370)
T ss_pred             cceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence            999999999888875 5567889988866543

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.69  E-value=2.3e-15  Score=171.23  Aligned_cols=242  Identities=20%  Similarity=0.289  Sum_probs=187.2

Q ss_pred             CCCceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCce--ee----ecCCCCCCeEEEEEccCC--CEEEEEeCCCeEEEE
Q 047260          506 RNSKVTCCHFSS-DGKLLASSGHDRKVVLWNMDTLQT--ES----TPEDHKSVVTDVRFRPNS--SQLATASVDKSVRLW  576 (784)
Q Consensus       506 H~~~V~~l~fsp-dg~~Lasgs~Dg~I~IWd~~t~~~--~~----~l~~h~~~It~i~fspdg--~~Latgs~Dg~I~IW  576 (784)
                      -...|+|++|+| +..+||.|+.+|.|.+||+..+..  ..    ....|..+|+.+.|..+.  .-|++++.||.|..|
T Consensus       241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W  320 (555)
T KOG1587|consen  241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW  320 (555)
T ss_pred             cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence            567799999999 666888899999999999986654  22    223688999999998744  449999999999999


Q ss_pred             cCCCCcceeee-----cc------CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeC---CCCe--------eEEeecCC
Q 047260          577 DAANPNFCSQA-----YT------GHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSI---NPFL--------CTHITKGG  634 (784)
Q Consensus       577 dl~~~~~~~~~-----~~------~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl---~~~~--------~~~~~~~~  634 (784)
                      +++.-......     ..      .....+++++|.+.....|++|+++|.|..-+.   +...        ....+.++
T Consensus       321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~  400 (555)
T KOG1587|consen  321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP  400 (555)
T ss_pred             eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence            88753321111     11      123468999999999999999999999987333   2222        12334578


Q ss_pred             eeEEEEecCCCEEEEEECCCcEEEEECC-CCeEEEEEeCCCCCEEEEEEcCCCCEE-EEEe-CCeEEEEeCCCC--ceEE
Q 047260          635 TAQVRFQPRIGQLLAAASDKVVSIFDIE-TDRQTHSLQGHAELVNYICWDTNGDYL-ASVS-QNLVKVWSMASG--ECIQ  709 (784)
Q Consensus       635 v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~-t~~~i~~l~~h~~~V~sl~~spdg~~L-asgs-dd~I~IwDl~t~--~~i~  709 (784)
                      +..+.++|-+..++..+.|.+|+||... ...++..+..+...|++++|||...-+ +++. +|.|.|||+...  .++.
T Consensus       401 v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~  480 (555)
T KOG1587|consen  401 VYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVL  480 (555)
T ss_pred             eEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcc
Confidence            8999999999888888889999999988 677888888888889999999976544 4444 449999999753  4555


Q ss_pred             EeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCC
Q 047260          710 ELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAEN  747 (784)
Q Consensus       710 ~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~  747 (784)
                      +........+.+.|++.++.|++|...|++++|++...
T Consensus       481 s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~  518 (555)
T KOG1587|consen  481 SQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES  518 (555)
T ss_pred             cccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence            66555566778888888999999999999999999643

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.69  E-value=1.4e-15  Score=163.58  Aligned_cols=260  Identities=17%  Similarity=0.272  Sum_probs=190.1

Q ss_pred             cCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCe-EEEEEcc-------CCCEEEEEeCCCeEEEE
Q 047260          505 SRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVV-TDVRFRP-------NSSQLATASVDKSVRLW  576 (784)
Q Consensus       505 ~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I-t~i~fsp-------dg~~Latgs~Dg~I~IW  576 (784)
                      .|...|.|+.|+.+...+.+++ |..+.+|.--+......+.-....| +.+..-+       ....|+.++.||.+.|.
T Consensus        12 r~~e~vc~v~w~~~eei~~~~d-Dh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il   90 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVSD-DHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL   90 (737)
T ss_pred             ccceeEEeecccccceEEEecc-CceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence            3667788999998877666655 5555555433222222222111212 1111111       23578889999999998


Q ss_pred             cCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC--eeEEeecCCeeEEEEecCCCEEEEEECCC
Q 047260          577 DAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPF--LCTHITKGGTAQVRFQPRIGQLLAAASDK  654 (784)
Q Consensus       577 dl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~--~~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg  654 (784)
                      +-..  .+.+....|.+.|.+-.|+|+|. -+++.++||.|++|.-...  ..+......+.|++|.|+.+.++.+. .+
T Consensus        91 ~k~~--rVE~sv~AH~~A~~~gRW~~dGt-gLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~  166 (737)
T KOG1524|consen   91 NKSA--RVERSISAHAAAISSGRWSPDGA-GLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQ-GG  166 (737)
T ss_pred             cccc--hhhhhhhhhhhhhhhcccCCCCc-eeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEec-CC
Confidence            7542  35677789999999999999998 5567788999999987642  22334557899999999988776654 46


Q ss_pred             cEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEE
Q 047260          655 VVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVV  733 (784)
Q Consensus       655 ~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~  733 (784)
                      .+.|=.+.....+..++.|.+-|.++.|++...++++|++| ..+|||. -|..+..-..|+.+|++++|.|+ ..++++
T Consensus       167 h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey~ITSva~npd-~~~~v~  244 (737)
T KOG1524|consen  167 HISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAAEEYAITSVAFNPE-KDYLLW  244 (737)
T ss_pred             eEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecc-cCcccccCChhccceeeeeeccc-cceeee
Confidence            77787777777777889999999999999999999999999 9999995 46677777789999999999999 434443


Q ss_pred             ECCCeEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEECCCcEEE
Q 047260          734 GGISSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKL  782 (784)
Q Consensus       734 s~dg~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs~DG~V~I  782 (784)
                      + ..++++=          ....+.|..++||+||..+++|+..|.|.+
T Consensus       245 S-~nt~R~~----------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  245 S-YNTARFS----------SPRVGSIFNLSWSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             e-eeeeeec----------CCCccceEEEEEcCCCceeeccccCceEEE
Confidence            3 3445521          234577999999999999999999988754

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=1.1e-14  Score=143.81  Aligned_cols=266  Identities=13%  Similarity=0.174  Sum_probs=191.8

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEECCC----------CceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcC
Q 047260          509 KVTCCHFSSDGKLLASSGHDRKVVLWNMDT----------LQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDA  578 (784)
Q Consensus       509 ~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t----------~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl  578 (784)
                      .|..-+|+|.+++|+.|..+|.|.|+.+++          ...+..+.+|.++|..++|+  ..+|++|+ ||.|+-|..
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W   88 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEW   88 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeee
Confidence            467778999999999999999999998863          22344557999999999998  44677765 599999987


Q ss_pred             CCCcce---e----eeccCC-----CCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCC---eeEEEEecC
Q 047260          579 ANPNFC---S----QAYTGH-----SSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGG---TAQVRFQPR  643 (784)
Q Consensus       579 ~~~~~~---~----~~~~~h-----~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~---v~~v~fsp~  643 (784)
                      +.....   .    ....-|     --.|.++...|..+.+|.++ .|+.++.||+++++..+.++++   +.++.--..
T Consensus        89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag-GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~  167 (325)
T KOG0649|consen   89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG-GDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA  167 (325)
T ss_pred             hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEec-CCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence            643210   0    011112     23588999999888777666 6999999999999998888754   566666566


Q ss_pred             CCEEEEEECCCcEEEEECCCCeEEEEEeCCC----------CCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEEEecc
Q 047260          644 IGQLLAAASDKVVSIFDIETDRQTHSLQGHA----------ELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELSS  713 (784)
Q Consensus       644 ~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~----------~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~~l~~  713 (784)
                      ...+++|+.||++++||+++++.+..+...+          ..|-+++  -+..++++|....+.+|.+++.++...|..
T Consensus       168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGgGp~lslwhLrsse~t~vfpi  245 (325)
T KOG0649|consen  168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGGGPKLSLWHLRSSESTCVFPI  245 (325)
T ss_pred             CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceEEecCCCceeEEeccCCCceEEEec
Confidence            6789999999999999999999988875321          1344444  456688887777999999999988888765


Q ss_pred             CCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceEEecccCCceEEEEEeCCC-CEEEEEECCCcEEEe
Q 047260          714 NGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIAAHENIISALAQSPVT-GMVASASHDSSVKLW  783 (784)
Q Consensus       714 ~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~~~h~~~V~slafspdg-~~LaSgs~DG~V~IW  783 (784)
                      . ..+..+.|..+  .+++++..+.|.-|.+..--...+.......+...|+... ++|-.++...++.|+
T Consensus       246 p-a~v~~v~F~~d--~vl~~G~g~~v~~~~l~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~  313 (325)
T KOG0649|consen  246 P-ARVHLVDFVDD--CVLIGGEGNHVQSYTLNGVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL  313 (325)
T ss_pred             c-cceeEeeeecc--eEEEeccccceeeeeeccEEEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence            4 66788888766  6788887778999987654333333333334444554332 344445556666654

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.68  E-value=3.6e-15  Score=169.27  Aligned_cols=231  Identities=13%  Similarity=0.132  Sum_probs=166.1

Q ss_pred             CCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCC---CeEEEEcCCCCcc-eeeeccCCCCCeEEEEEcCC
Q 047260          528 DRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVD---KSVRLWDAANPNF-CSQAYTGHSSPIMSLDFHPK  603 (784)
Q Consensus       528 Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~D---g~I~IWdl~~~~~-~~~~~~~h~~~V~sl~~sp~  603 (784)
                      +..|.|||.+... ...+..|...|.+.+|+|||+.|+.++.+   ..|++||+.++.. .+..+.+   ....++|+|+
T Consensus       183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g---~~~~~~wSPD  258 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG---HNGAPAFSPD  258 (429)
T ss_pred             eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC---ccCceeECCC
Confidence            4689999987544 45667788899999999999999988754   3699999987652 2222333   3457899999


Q ss_pred             CCcEEEEEeCCCeEEE--EeCCCCeeEEee--cCCeeEEEEecCCCEEEEEEC-CCcEEEEECCCC-eEEEEEeCCCCCE
Q 047260          604 KTDLFCFCDNDNEIQY--WSINPFLCTHIT--KGGTAQVRFQPRIGQLLAAAS-DKVVSIFDIETD-RQTHSLQGHAELV  677 (784)
Q Consensus       604 ~~~ll~sgs~dg~I~i--wDl~~~~~~~~~--~~~v~~v~fsp~~~~Ll~~s~-Dg~I~IwDl~t~-~~i~~l~~h~~~V  677 (784)
                      +..++++.+.+|.+.+  ||+.+.......  ...+....|+|++..|+.++. ++.+.||++... .....+ .+..  
T Consensus       259 G~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--  335 (429)
T PRK01742        259 GSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--  335 (429)
T ss_pred             CCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--
Confidence            9978777777886555  466555443332  345677899999998877664 688888876432 222223 3433  


Q ss_pred             EEEEEcCCCCEEEEEeCCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEEC---CCCceEEecc
Q 047260          678 NYICWDTNGDYLASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNM---AENKSMTIAA  754 (784)
Q Consensus       678 ~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl---~~~~~~~~~~  754 (784)
                      .++.|+|||++|+..+.+.+.+||+.+++.......  .....+.|+|++++|++++.++.+.+|++   .......+..
T Consensus       336 ~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~lt~~--~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~  413 (429)
T PRK01742        336 YSAQISADGKTLVMINGDNVVKQDLTSGSTEVLSST--FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPG  413 (429)
T ss_pred             CCccCCCCCCEEEEEcCCCEEEEECCCCCeEEecCC--CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccC
Confidence            457899999999888777777899998875433222  23456789999999999999987776664   3444446778


Q ss_pred             cCCceEEEEEeCC
Q 047260          755 HENIISALAQSPV  767 (784)
Q Consensus       755 h~~~V~slafspd  767 (784)
                      |.+.+..++|+|-
T Consensus       414 ~~g~~~~p~wsp~  426 (429)
T PRK01742        414 SDGQVKFPAWSPY  426 (429)
T ss_pred             CCCCCCCcccCCC
Confidence            8888999999984

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.68  E-value=5e-15  Score=151.48  Aligned_cols=223  Identities=17%  Similarity=0.242  Sum_probs=174.0

Q ss_pred             eecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCC---CceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCC
Q 047260          503 IRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDT---LQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAA  579 (784)
Q Consensus       503 l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t---~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~  579 (784)
                      +.--..+|+|.+|++|+..+|++.....|.||....   .+..+++..|...|++|+|+|..+.|++|+.|..-+||...
T Consensus         6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~   85 (361)
T KOG1523|consen    6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP   85 (361)
T ss_pred             eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccC
Confidence            344567899999999999999999999999998864   45778899999999999999999999999999999999984


Q ss_pred             CCcc--eeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe-------eEEeecCCeeEEEEecCCCEEEEE
Q 047260          580 NPNF--CSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFL-------CTHITKGGTAQVRFQPRIGQLLAA  650 (784)
Q Consensus       580 ~~~~--~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~-------~~~~~~~~v~~v~fsp~~~~Ll~~  650 (784)
                      .+..  ....+..+...++++.|+|.++ .|++|+....|.||-++...       ....++..|.++.|+|++-.|++|
T Consensus        86 ~~~~WkptlvLlRiNrAAt~V~WsP~en-kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG  164 (361)
T KOG1523|consen   86 SGGTWKPTLVLLRINRAATCVKWSPKEN-KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG  164 (361)
T ss_pred             CCCeeccceeEEEeccceeeEeecCcCc-eEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence            4332  2334556888999999999976 78889888999888776432       234455788999999999999999


Q ss_pred             ECCCcEEEEECCC------------------CeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCc-eEEE
Q 047260          651 ASDKVVSIFDIET------------------DRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGE-CIQE  710 (784)
Q Consensus       651 s~Dg~I~IwDl~t------------------~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~-~i~~  710 (784)
                      +.|+..+||..--                  |..+..+....+.|..+.|+|+|..|+-.+.+ .|.+-|..... .+..
T Consensus       165 s~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~  244 (361)
T KOG1523|consen  165 STDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQS  244 (361)
T ss_pred             ccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccc
Confidence            9999999996421                  12223333456789999999999999887765 89888877654 3444


Q ss_pred             eccCCCceEEEEEecC
Q 047260          711 LSSNGNQFHSCVFHPS  726 (784)
Q Consensus       711 l~~~~~~I~sl~fspd  726 (784)
                      +....-+..++.|-.+
T Consensus       245 ~~~~~lP~ls~~~ise  260 (361)
T KOG1523|consen  245 VATAQLPLLSVSWISE  260 (361)
T ss_pred             hhhccCCceeeEeecC
Confidence            4333355666666544

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.67  E-value=2.4e-15  Score=157.09  Aligned_cols=202  Identities=15%  Similarity=0.246  Sum_probs=160.8

Q ss_pred             EeecCCCceEEEEEcC-CCCEEEEEeCCCeEEEEECCCC-------ceeeecCCCCCCeEEEEEcc-CCCEEEEEeCCCe
Q 047260          502 CIRSRNSKVTCCHFSS-DGKLLASSGHDRKVVLWNMDTL-------QTESTPEDHKSVVTDVRFRP-NSSQLATASVDKS  572 (784)
Q Consensus       502 ~l~~H~~~V~~l~fsp-dg~~Lasgs~Dg~I~IWd~~t~-------~~~~~l~~h~~~It~i~fsp-dg~~Latgs~Dg~  572 (784)
                      .+.+|+++|..++|+| +...||+|+.|.+|.||.+...       +.+..+.+|...|--|.|+| ..+.|++++.|.+
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~  155 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT  155 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence            3578999999999999 6668999999999999998643       45677889999999999999 5578999999999


Q ss_pred             EEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec----CCeeEEEEecCCCEEE
Q 047260          573 VRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK----GGTAQVRFQPRIGQLL  648 (784)
Q Consensus       573 I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~----~~v~~v~fsp~~~~Ll  648 (784)
                      |.|||+.+++..+. +. |.+-|.++.|+.+|. ++++.+.|..|+|||.++++.+....    .....+.|-.++..+-
T Consensus       156 v~iWnv~tgeali~-l~-hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~t  232 (472)
T KOG0303|consen  156 VSIWNVGTGEALIT-LD-HPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFT  232 (472)
T ss_pred             EEEEeccCCceeee-cC-CCCeEEEEEeccCCc-eeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceee
Confidence            99999999885444 33 999999999999988 88889999999999999988876653    2335567888888444


Q ss_pred             EEEC---CCcEEEEECCCCeEEEEEe--CCCCCEEEEEEcCCCCEEEEEe--CCeEEEEeCCCCc
Q 047260          649 AAAS---DKVVSIFDIETDRQTHSLQ--GHAELVNYICWDTNGDYLASVS--QNLVKVWSMASGE  706 (784)
Q Consensus       649 ~~s~---Dg~I~IwDl~t~~~i~~l~--~h~~~V~sl~~spdg~~Lasgs--dd~I~IwDl~t~~  706 (784)
                      +|.+   +..+-+||..+.+....+.  .....|.---|++|..++..++  |+.|+-|.+....
T Consensus       233 TGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  233 TGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP  297 (472)
T ss_pred             eccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence            4433   7889999987653322222  2345566667889999888777  4499999998765

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.67  E-value=1.2e-14  Score=146.66  Aligned_cols=267  Identities=16%  Similarity=0.252  Sum_probs=197.1

Q ss_pred             CceEEEEEcC--C-CCEEEEEeC----CCeEEEEECC--CCceeeec-CCCCCCeEEEEEccCC-----CEEEEEeCCCe
Q 047260          508 SKVTCCHFSS--D-GKLLASSGH----DRKVVLWNMD--TLQTESTP-EDHKSVVTDVRFRPNS-----SQLATASVDKS  572 (784)
Q Consensus       508 ~~V~~l~fsp--d-g~~Lasgs~----Dg~I~IWd~~--t~~~~~~l-~~h~~~It~i~fspdg-----~~Latgs~Dg~  572 (784)
                      -.+.++.|+.  + ..+||.|+.    .++|.|..++  +++.+..- ..|..+++.+-|.|+.     .+|||++  -.
T Consensus        45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~  122 (364)
T KOG0290|consen   45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DF  122 (364)
T ss_pred             CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc--Ce
Confidence            3578888884  3 347888863    4566666554  44443322 3699999999999976     3466654  37


Q ss_pred             EEEEcCCCCc--cee------eeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC------eeEEeecCCeeEE
Q 047260          573 VRLWDAANPN--FCS------QAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPF------LCTHITKGGTAQV  638 (784)
Q Consensus       573 I~IWdl~~~~--~~~------~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~------~~~~~~~~~v~~v  638 (784)
                      +|+|.+....  ...      .....+..+++++.|+.-...++.+++-|-++.|||++++      ..+..+...|..+
T Consensus       123 LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DI  202 (364)
T KOG0290|consen  123 LRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDI  202 (364)
T ss_pred             EEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEE
Confidence            9999987422  111      1123567899999999999999999999999999999874      3345567899999


Q ss_pred             EEecCCC-EEEEEECCCcEEEEECCCCeEEEEEeC---CCCCEEEEEEcC-CCCEEEEEeCC--eEEEEeCCCC-ceEEE
Q 047260          639 RFQPRIG-QLLAAASDKVVSIFDIETDRQTHSLQG---HAELVNYICWDT-NGDYLASVSQN--LVKVWSMASG-ECIQE  710 (784)
Q Consensus       639 ~fsp~~~-~Ll~~s~Dg~I~IwDl~t~~~i~~l~~---h~~~V~sl~~sp-dg~~Lasgsdd--~I~IwDl~t~-~~i~~  710 (784)
                      +|...+. .+++++.||.|++||++..+.-..+..   ...+...++|++ |-+|+++...+  .|.|.|++.. .++.+
T Consensus       203 af~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~  282 (364)
T KOG0290|consen  203 AFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVAR  282 (364)
T ss_pred             EeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceeh
Confidence            9998654 567778899999999998654333322   256788899987 55677776644  8999999974 68899


Q ss_pred             eccCCCceEEEEEecCC-CEEEEEECCCeEEEEECCCCce------EEecccCCceEEEEEeCC-CCEEEEEEC
Q 047260          711 LSSNGNQFHSCVFHPSY-STLLVVGGISSLELWNMAENKS------MTIAAHENIISALAQSPV-TGMVASASH  776 (784)
Q Consensus       711 l~~~~~~I~sl~fspdg-~~L~s~s~dg~I~Iwdl~~~~~------~~~~~h~~~V~slafspd-g~~LaSgs~  776 (784)
                      +.+|.+.|+.++|.|.. ..|++++.|..+.|||+..--.      +-...-.+.|+.+.|++. ...|+.+..
T Consensus       283 L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~  356 (364)
T KOG0290|consen  283 LRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFG  356 (364)
T ss_pred             hhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEec
Confidence            99999999999999976 5688888899999999976432      122236678999999964 456766643

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.67  E-value=4.6e-15  Score=154.28  Aligned_cols=287  Identities=15%  Similarity=0.167  Sum_probs=215.9

Q ss_pred             CCCCCcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEe-ecCCCceEEE
Q 047260          435 EGTGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCI-RSRNSKVTCC  513 (784)
Q Consensus       435 ~~~~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l-~~H~~~V~~l  513 (784)
                      .++..++.++.|..+ +++++.|..|..+++|.+...--.+.                    .+.|... ..|.+.|.|+
T Consensus        53 ~~H~GCiNAlqFS~N-~~~L~SGGDD~~~~~W~~de~~~~k~--------------------~KPI~~~~~~H~SNIF~L  111 (609)
T KOG4227|consen   53 REHTGCINALQFSHN-DRFLASGGDDMHGRVWNVDELMVRKT--------------------PKPIGVMEHPHRSNIFSL  111 (609)
T ss_pred             hhhccccceeeeccC-CeEEeecCCcceeeeechHHHHhhcC--------------------CCCceeccCccccceEEE
Confidence            356678888888776 88888999999999997643321100                    0122222 2366899999


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCC---CCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCccee--eec
Q 047260          514 HFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHK---SVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCS--QAY  588 (784)
Q Consensus       514 ~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~---~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~--~~~  588 (784)
                      +|....++|++|+.+++|.+.|+++.+.+..+. |.   +.|..+..+|..+.|++.+.+|.|.+||++......  ...
T Consensus       112 ~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~-~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~  190 (609)
T KOG4227|consen  112 EFDLENRFLYSGERWGTVIKHDIETKQSIYVAN-ENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLP  190 (609)
T ss_pred             EEccCCeeEecCCCcceeEeeecccceeeeeec-ccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeee
Confidence            999999999999999999999999988887774 44   489999999998999999999999999998644222  222


Q ss_pred             cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeE-------EeecC---CeeEEEEecCCCEEEEEECCCcEEE
Q 047260          589 TGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCT-------HITKG---GTAQVRFQPRIGQLLAAASDKVVSI  658 (784)
Q Consensus       589 ~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~-------~~~~~---~v~~v~fsp~~~~Ll~~s~Dg~I~I  658 (784)
                      .........+.|+|..+.+|++.+..+-+.+||++.....       ..+..   .-..+.|+|.|+.+++.-....-.+
T Consensus       191 AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~  270 (609)
T KOG4227|consen  191 ANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLY  270 (609)
T ss_pred             cCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEE
Confidence            2344667889999999999999999999999999842211       11111   2256789999999998887777788


Q ss_pred             EECCCCeEE-EEEeCCC-------CCEEEEEEcCCCCEEEEEeCC-eEEEEeCCC----------C-------------c
Q 047260          659 FDIETDRQT-HSLQGHA-------ELVNYICWDTNGDYLASVSQN-LVKVWSMAS----------G-------------E  706 (784)
Q Consensus       659 wDl~t~~~i-~~l~~h~-------~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t----------~-------------~  706 (784)
                      ||+-..++. ..+. |.       ..+.+++|..|- -+++|+|+ .|++|.+..          |             +
T Consensus       271 ~D~~S~R~~V~k~D-~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~  348 (609)
T KOG4227|consen  271 FDFISQRCFVLKSD-HNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEK  348 (609)
T ss_pred             eeeecccceeEecc-CCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecc
Confidence            898775443 3332 32       246677786544 48899998 999998742          1             1


Q ss_pred             eEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECC
Q 047260          707 CIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMA  745 (784)
Q Consensus       707 ~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~  745 (784)
                      .+..+++|...++.+.|+|...+|++.+-.+.++||.-.
T Consensus       349 ~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~  387 (609)
T KOG4227|consen  349 ELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH  387 (609)
T ss_pred             eeEEEecccccccceeecCCcceEeccchhhheeccccc
Confidence            245678899999999999999999999999999999643

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.67  E-value=4.2e-15  Score=163.07  Aligned_cols=270  Identities=16%  Similarity=0.235  Sum_probs=203.6

Q ss_pred             cccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCC
Q 047260          440 LASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDG  519 (784)
Q Consensus       440 ~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg  519 (784)
                      .+-.+.|.+|+..++.+  .++.+.+|+.++++                          .+.++++|.+.|.|++|+.||
T Consensus        14 ci~d~afkPDGsqL~lA--Ag~rlliyD~ndG~--------------------------llqtLKgHKDtVycVAys~dG   65 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILA--AGSRLLVYDTSDGT--------------------------LLQPLKGHKDTVYCVAYAKDG   65 (1081)
T ss_pred             chheeEECCCCceEEEe--cCCEEEEEeCCCcc--------------------------cccccccccceEEEEEEccCC
Confidence            34455666776666642  34667777776554                          456789999999999999999


Q ss_pred             CEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEE
Q 047260          520 KLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLD  599 (784)
Q Consensus       520 ~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~  599 (784)
                      +.+|+|+.|..|.||+..-.-. ..+ .|.+.|.|+.|+|-...|++|+-. ..-+|..+......   ......|.+++
T Consensus        66 krFASG~aDK~VI~W~~klEG~-LkY-SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K---~kss~R~~~Cs  139 (1081)
T KOG1538|consen   66 KRFASGSADKSVIIWTSKLEGI-LKY-SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSK---HKSSSRIICCS  139 (1081)
T ss_pred             ceeccCCCceeEEEecccccce-eee-ccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHh---hhhheeEEEee
Confidence            9999999999999998763222 223 699999999999988899998764 57889887644211   12346788999


Q ss_pred             EcCCCCcEEEEEeCCCeEEEEeCCCCeeEEee-----cCCeeEEEEecCCC-----EEEEEECCCcEEEEECCCCeEEEE
Q 047260          600 FHPKKTDLFCFCDNDNEIQYWSINPFLCTHIT-----KGGTAQVRFQPRIG-----QLLAAASDKVVSIFDIETDRQTHS  669 (784)
Q Consensus       600 ~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~-----~~~v~~v~fsp~~~-----~Ll~~s~Dg~I~IwDl~t~~~i~~  669 (784)
                      |..||. +++.|-.+|+|.+-+-.......+-     ..+|.+++|+|..+     .+++.....++.+|.+. |+.+..
T Consensus       140 WtnDGq-ylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk  217 (1081)
T KOG1538|consen  140 WTNDGQ-YLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGK  217 (1081)
T ss_pred             ecCCCc-EEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecc
Confidence            999987 7778889999999876654444333     36789999998653     46666667777777765 333332


Q ss_pred             EeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCC
Q 047260          670 LQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAE  746 (784)
Q Consensus       670 l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~  746 (784)
                      -+.-.-.-.|+.+.++|+|+..|+.+ .+.+|. +.|..+.++......|+.+...|++.+++.|..||+|..|++..
T Consensus       218 ~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f  294 (1081)
T KOG1538|consen  218 DRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF  294 (1081)
T ss_pred             cccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence            22233345788899999998887755 777775 66778888877889999999999999999999999999998743

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.66  E-value=2.7e-15  Score=154.61  Aligned_cols=268  Identities=15%  Similarity=0.201  Sum_probs=189.8

Q ss_pred             CceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcC--CCCEEEEEeCC
Q 047260          451 DRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSS--DGKLLASSGHD  528 (784)
Q Consensus       451 ~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fsp--dg~~Lasgs~D  528 (784)
                      +..++++-..+.|++|+...+                          ..+..+++|...++.+.|..  ....+.+|+.|
T Consensus        40 e~~vav~lSngsv~lyd~~tg--------------------------~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssD   93 (376)
T KOG1188|consen   40 ETAVAVSLSNGSVRLYDKGTG--------------------------QLLEEFKGPPATTNGVRFISCDSPHGVISCSSD   93 (376)
T ss_pred             ceeEEEEecCCeEEEEeccch--------------------------hhhheecCCCCcccceEEecCCCCCeeEEeccC
Confidence            345667777888888866332                          23455677888888888877  45689999999


Q ss_pred             CeEEEEECCCCceeeec--CCCC-CCeEEEEEccCCCEEEEEeC----CCeEEEEcCCCCcc-eeeeccCCCCCeEEEEE
Q 047260          529 RKVVLWNMDTLQTESTP--EDHK-SVVTDVRFRPNSSQLATASV----DKSVRLWDAANPNF-CSQAYTGHSSPIMSLDF  600 (784)
Q Consensus       529 g~I~IWd~~t~~~~~~l--~~h~-~~It~i~fspdg~~Latgs~----Dg~I~IWdl~~~~~-~~~~~~~h~~~V~sl~~  600 (784)
                      |+|++||+++......+  ..+. .+..|++.+-++..+++|..    |-.|.+||++.... +......|.+.|+++.|
T Consensus        94 G~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrF  173 (376)
T KOG1188|consen   94 GTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRF  173 (376)
T ss_pred             CeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEe
Confidence            99999999876554443  3454 45677777767788888754    67899999998776 44455689999999999


Q ss_pred             cCCCCcEEEEEeCCCeEEEEeCCCCee------EEeecCCeeEEEEecCC-CEEEEEECCCcEEEEECCCCeEEEEEeCC
Q 047260          601 HPKKTDLFCFCDNDNEIQYWSINPFLC------THITKGGTAQVRFQPRI-GQLLAAASDKVVSIFDIETDRQTHSLQGH  673 (784)
Q Consensus       601 sp~~~~ll~sgs~dg~I~iwDl~~~~~------~~~~~~~v~~v~fsp~~-~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h  673 (784)
                      +|..+.++++|+.||.|.+||++....      +..+...|.++.|..++ +.|.+-+...+..+|+++.+.+...+...
T Consensus       174 HP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~  253 (376)
T KOG1188|consen  174 HPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENP  253 (376)
T ss_pred             cCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCc
Confidence            999999999999999999999975322      12223567888898775 56888889999999999988765544321


Q ss_pred             C-------------CCEEEEEEcCCCCEEEEEe--CCeEEEEeC---CCC---ceEEEecc-CCCceEEEEEecCCCEEE
Q 047260          674 A-------------ELVNYICWDTNGDYLASVS--QNLVKVWSM---ASG---ECIQELSS-NGNQFHSCVFHPSYSTLL  731 (784)
Q Consensus       674 ~-------------~~V~sl~~spdg~~Lasgs--dd~I~IwDl---~t~---~~i~~l~~-~~~~I~sl~fspdg~~L~  731 (784)
                      .             .-|.+. ...+...++.++  .+...++-+   .++   ..+..+.+ |...|+++.|...+..++
T Consensus       254 ~~~~~d~r~~~~~dY~I~~~-~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~  332 (376)
T KOG1188|consen  254 DVSADDLRKEDNCDYVINEH-SPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLY  332 (376)
T ss_pred             cchhhhHHhhhhhhheeecc-cCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceee
Confidence            1             011111 112333444433  234444433   333   34445555 556788899998899999


Q ss_pred             EEECCCeEEEEECC
Q 047260          732 VVGGISSLELWNMA  745 (784)
Q Consensus       732 s~s~dg~I~Iwdl~  745 (784)
                      +|+.||.|.+|...
T Consensus       333 TGGEDG~l~~Wk~~  346 (376)
T KOG1188|consen  333 TGGEDGLLQAWKVE  346 (376)
T ss_pred             ccCCCceEEEEecC
Confidence            99999999999863

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.66  E-value=1.4e-13  Score=152.20  Aligned_cols=285  Identities=15%  Similarity=0.149  Sum_probs=187.6

Q ss_pred             eEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEe-CCCeEEEE
Q 047260          498 CEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATAS-VDKSVRLW  576 (784)
Q Consensus       498 ~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs-~Dg~I~IW  576 (784)
                      ..+..+......-..+.|+|||+++++++.||.|.++|+.+.+.+.++.... ...++++++||+++++++ .++.+.|+
T Consensus        27 ~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~  105 (369)
T PF02239_consen   27 KVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVI  105 (369)
T ss_dssp             SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEE
T ss_pred             eEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEe
Confidence            3455555544444557899999999999999999999999999999986544 467899999999998776 58999999


Q ss_pred             cCCCCcceeeecc------CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeE--Eee--cCCeeEEEEecCCCE
Q 047260          577 DAANPNFCSQAYT------GHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCT--HIT--KGGTAQVRFQPRIGQ  646 (784)
Q Consensus       577 dl~~~~~~~~~~~------~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~--~~~--~~~v~~v~fsp~~~~  646 (784)
                      |.++.+.....-.      .....+..|..++....++++--+.+.|.+.|.......  ...  ........|+|++++
T Consensus       106 D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry  185 (369)
T PF02239_consen  106 DAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRY  185 (369)
T ss_dssp             ETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSE
T ss_pred             ccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccce
Confidence            9998763332211      134567888888888867776677799999997754322  222  245678899999999


Q ss_pred             EEEEEC-CCcEEEEECCCCeEEEEEeC----CCCCEEEEE-------Ec--CCCCEE-EEEeCCeEEEEeCCCCceEEEe
Q 047260          647 LLAAAS-DKVVSIFDIETDRQTHSLQG----HAELVNYIC-------WD--TNGDYL-ASVSQNLVKVWSMASGECIQEL  711 (784)
Q Consensus       647 Ll~~s~-Dg~I~IwDl~t~~~i~~l~~----h~~~V~sl~-------~s--pdg~~L-asgsdd~I~IwDl~t~~~i~~l  711 (784)
                      ++++.. ++.|.++|.++++.+..+..    |..++..+-       |.  ..+... ...+.+.+.+||..+.+.+.++
T Consensus       186 ~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I  265 (369)
T PF02239_consen  186 FLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTI  265 (369)
T ss_dssp             EEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEE
T ss_pred             eeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEE
Confidence            888765 78999999999988776642    333443321       22  122222 3344556778999999999999


Q ss_pred             ccCCCceEEEEEecCCCEEEEE---EC-CCeEEEEECCCCceEEecc--cCCceEEEEEeCCCCEEEEEECCC--cEEEe
Q 047260          712 SSNGNQFHSCVFHPSYSTLLVV---GG-ISSLELWNMAENKSMTIAA--HENIISALAQSPVTGMVASASHDS--SVKLW  783 (784)
Q Consensus       712 ~~~~~~I~sl~fspdg~~L~s~---s~-dg~I~Iwdl~~~~~~~~~~--h~~~V~slafspdg~~LaSgs~DG--~V~IW  783 (784)
                      ...... ..+..+|+++++++.   +. .+.|.++|..+.+......  ....+..+.|++||+.+..+..|+  .|.||
T Consensus       266 ~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~  344 (369)
T PF02239_consen  266 PTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVY  344 (369)
T ss_dssp             E-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEE
T ss_pred             ECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEE
Confidence            987777 888899999999998   33 3799999999987663332  223599999999999766655443  59888


Q ss_pred             C
Q 047260          784 K  784 (784)
Q Consensus       784 d  784 (784)
                      |
T Consensus       345 D  345 (369)
T PF02239_consen  345 D  345 (369)
T ss_dssp             E
T ss_pred             E
Confidence            6

...

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.64  E-value=1.7e-15  Score=163.40  Aligned_cols=211  Identities=18%  Similarity=0.308  Sum_probs=163.1

Q ss_pred             eEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeec-CCCCCCeEEEEEcc--CCCEEEEEeCCCeEE
Q 047260          498 CEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTP-EDHKSVVTDVRFRP--NSSQLATASVDKSVR  574 (784)
Q Consensus       498 ~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l-~~h~~~It~i~fsp--dg~~Latgs~Dg~I~  574 (784)
                      .....|.||++.|+|++|+.||.+|++|++|-.|.|||.-..+++..+ .+|...|.++.|-|  +.+++++|..|..|+
T Consensus        41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~  120 (758)
T KOG1310|consen   41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK  120 (758)
T ss_pred             chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence            344668899999999999999999999999999999999888877766 58999999999999  667899999999999


Q ss_pred             EEcCCC---------CcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe-eEEee------------c
Q 047260          575 LWDAAN---------PNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFL-CTHIT------------K  632 (784)
Q Consensus       575 IWdl~~---------~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~-~~~~~------------~  632 (784)
                      ++|+..         .+.....+..|...|..|+..|++++.|.++++||+|+-+|++... |....            .
T Consensus       121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l  200 (758)
T KOG1310|consen  121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL  200 (758)
T ss_pred             EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence            999985         2234555678999999999999999999999999999999998521 11111            0


Q ss_pred             CCeeEEEEecCCC-EEEEEECCCcEEEEECCCC--------e----------EEEEEe-CCC-----------CCEEEEE
Q 047260          633 GGTAQVRFQPRIG-QLLAAASDKVVSIFDIETD--------R----------QTHSLQ-GHA-----------ELVNYIC  681 (784)
Q Consensus       633 ~~v~~v~fsp~~~-~Ll~~s~Dg~I~IwDl~t~--------~----------~i~~l~-~h~-----------~~V~sl~  681 (784)
                      -...++.++|... +|++|+.|-..++||.+..        .          ++..+. +|.           ..++-+.
T Consensus       201 ielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vt  280 (758)
T KOG1310|consen  201 IELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVT  280 (758)
T ss_pred             heeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEE
Confidence            3456788998765 5677788999999995321        1          122221 121           1256678


Q ss_pred             EcCCCCEEEEEe-CCeEEEEeCCCCceE
Q 047260          682 WDTNGDYLASVS-QNLVKVWSMASGECI  708 (784)
Q Consensus       682 ~spdg~~Lasgs-dd~I~IwDl~t~~~i  708 (784)
                      |+|+|.-|.+.- .+.|+++|+..++..
T Consensus       281 fnpNGtElLvs~~gEhVYlfdvn~~~~~  308 (758)
T KOG1310|consen  281 FNPNGTELLVSWGGEHVYLFDVNEDKSP  308 (758)
T ss_pred             ECCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence            999997665554 459999999876543

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.64  E-value=8.1e-14  Score=144.49  Aligned_cols=272  Identities=15%  Similarity=0.250  Sum_probs=186.9

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecC-CCCCCeEEEEEcc-CCCEEEEEeCCCeEEEEcCCCCcce
Q 047260          507 NSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPE-DHKSVVTDVRFRP-NSSQLATASVDKSVRLWDAANPNFC  584 (784)
Q Consensus       507 ~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~-~h~~~It~i~fsp-dg~~Latgs~Dg~I~IWdl~~~~~~  584 (784)
                      +-.+..++|++.-..+|++..|-.|+|||-.. +....++ .....|+|++|-| .++.|+.|+.. -|.||..+.....
T Consensus        98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~  175 (445)
T KOG2139|consen   98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNA  175 (445)
T ss_pred             hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccccc
Confidence            44578899999767789999999999999876 4444443 3446899999999 45677777764 5999987642211


Q ss_pred             e-------------eeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEee---cCCeeEEEEecCCCEEE
Q 047260          585 S-------------QAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHIT---KGGTAQVRFQPRIGQLL  648 (784)
Q Consensus       585 ~-------------~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~---~~~v~~v~fsp~~~~Ll  648 (784)
                      .             ....+| .+|+++.|++|+..++-++-.+..|.|||.+++.++...   .+.++-+.|+|++.+|+
T Consensus       176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lf  254 (445)
T KOG2139|consen  176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLF  254 (445)
T ss_pred             ccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEE
Confidence            1             112344 689999999999866655667889999999988776554   26788899999999999


Q ss_pred             EEECCCcEEEEECCCC-eEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCC----Cc-----------eEEEec
Q 047260          649 AAASDKVVSIFDIETD-RQTHSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMAS----GE-----------CIQELS  712 (784)
Q Consensus       649 ~~s~Dg~I~IwDl~t~-~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t----~~-----------~i~~l~  712 (784)
                      ++.-|+..++|..... ...+-. ...+.|...+|+|+|++|.....+.-+||.+.-    ..           .+..+.
T Consensus       255 aAt~davfrlw~e~q~wt~erw~-lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~  333 (445)
T KOG2139|consen  255 AATCDAVFRLWQENQSWTKERWI-LGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQ  333 (445)
T ss_pred             Eecccceeeeehhcccceeccee-ccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccch
Confidence            9999999999955433 333222 244599999999999988877766555555421    10           011111


Q ss_pred             -----cC----CCceEEEEEecCCCEEEEEECCC--------eEEEEECCCCceEEec--c--cCCceEEEEEeC---CC
Q 047260          713 -----SN----GNQFHSCVFHPSYSTLLVVGGIS--------SLELWNMAENKSMTIA--A--HENIISALAQSP---VT  768 (784)
Q Consensus       713 -----~~----~~~I~sl~fspdg~~L~s~s~dg--------~I~Iwdl~~~~~~~~~--~--h~~~V~slafsp---dg  768 (784)
                           ..    .+.+.+++|.|.|.++++.-..+        .|.+||......+.+.  +  .......|+|+|   ++
T Consensus       334 e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g  413 (445)
T KOG2139|consen  334 EVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEG  413 (445)
T ss_pred             hhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCC
Confidence                 11    46788999999999999987653        3677887765554332  1  111234455554   34


Q ss_pred             CEEEEEECCCcEEE
Q 047260          769 GMVASASHDSSVKL  782 (784)
Q Consensus       769 ~~LaSgs~DG~V~I  782 (784)
                      .+|..+=..|.+.-
T Consensus       414 ~lLsiaWsTGriq~  427 (445)
T KOG2139|consen  414 RLLSIAWSTGRIQR  427 (445)
T ss_pred             cEEEEEeccCceEe
Confidence            45555555565543

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.62  E-value=4.9e-13  Score=137.08  Aligned_cols=266  Identities=17%  Similarity=0.250  Sum_probs=180.7

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEe-CC------CeEEEEcCCCC
Q 047260          509 KVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATAS-VD------KSVRLWDAANP  581 (784)
Q Consensus       509 ~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs-~D------g~I~IWdl~~~  581 (784)
                      ...+++|+.|...+++|.++| .+||+.+..+....-..+.+.+.-+..--..++|+..+ .+      ..|.|||=.. 
T Consensus         7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k-   84 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLK-   84 (346)
T ss_pred             ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEeccc-
Confidence            355599999999999998887 99999987555443333333322222222345555433 32      4799999333 


Q ss_pred             cceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCC-CCeeEEeec-----CCeeEEEEecCCCEEEEEEC-CC
Q 047260          582 NFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSIN-PFLCTHITK-----GGTAQVRFQPRIGQLLAAAS-DK  654 (784)
Q Consensus       582 ~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~-~~~~~~~~~-----~~v~~v~fsp~~~~Ll~~s~-Dg  654 (784)
                      +.++..+ ....+|.+|.+.++.   +++.- .+.|+||... ..+.++.++     .+.++++-......|+.-+. -|
T Consensus        85 ~~~i~el-~f~~~I~~V~l~r~r---iVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~G  159 (346)
T KOG2111|consen   85 ERCIIEL-SFNSEIKAVKLRRDR---IVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTG  159 (346)
T ss_pred             CcEEEEE-EeccceeeEEEcCCe---EEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccc
Confidence            3244433 356889999998763   33332 7899999887 444444433     22333332223333443333 59


Q ss_pred             cEEEEECCCCeE--EEEEeCCCCCEEEEEEcCCCCEEEEEeCC--eEEEEeCCCCceEEEeccC--CCceEEEEEecCCC
Q 047260          655 VVSIFDIETDRQ--THSLQGHAELVNYICWDTNGDYLASVSQN--LVKVWSMASGECIQELSSN--GNQFHSCVFHPSYS  728 (784)
Q Consensus       655 ~I~IwDl~t~~~--i~~l~~h~~~V~sl~~spdg~~Lasgsdd--~I~IwDl~t~~~i~~l~~~--~~~I~sl~fspdg~  728 (784)
                      .|.|.|+...+.  ...+..|...|.|++++-+|..+|+++..  -|||||..+|+.+.++...  ...|.+++|+|+..
T Consensus       160 qvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s  239 (346)
T KOG2111|consen  160 QVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSS  239 (346)
T ss_pred             eEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCcc
Confidence            999999987655  47788999999999999999999999955  8999999999999999743  46799999999999


Q ss_pred             EEEEEECCCeEEEEECCCCc---e-----------E-E----------ecccCCceEEEEEeCCCCEEEEEECCCcEE
Q 047260          729 TLLVVGGISSLELWNMAENK---S-----------M-T----------IAAHENIISALAQSPVTGMVASASHDSSVK  781 (784)
Q Consensus       729 ~L~s~s~dg~I~Iwdl~~~~---~-----------~-~----------~~~h~~~V~slafspdg~~LaSgs~DG~V~  781 (784)
                      +|+++++.|+|+||.+....   .           + .          +.-..+....++|..+.+.++..+.||.-+
T Consensus       240 ~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~  317 (346)
T KOG2111|consen  240 WLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYY  317 (346)
T ss_pred             EEEEEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEE
Confidence            99999999999999886532   1           0 0          111233455566776656666666777643

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.62  E-value=2.2e-13  Score=154.47  Aligned_cols=232  Identities=12%  Similarity=0.120  Sum_probs=168.5

Q ss_pred             CeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeC---CCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCC
Q 047260          529 RKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASV---DKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKT  605 (784)
Q Consensus       529 g~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~---Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~  605 (784)
                      ..|.+||.+.... ..+..+...+.+.+|+|||+.|+..+.   +..|.+||+.+++.  ..+......+..+.|+|++.
T Consensus       179 ~~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~--~~l~~~~~~~~~~~~SPDG~  255 (429)
T PRK03629        179 YELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV--RQVASFPRHNGAPAFSPDGS  255 (429)
T ss_pred             eeEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe--EEccCCCCCcCCeEECCCCC
Confidence            3699999875543 344457778999999999999987653   35799999987652  22222334455789999999


Q ss_pred             cEEEEEeCCC--eEEEEeCCCCeeEEeec--CCeeEEEEecCCCEEEEEECC-C--cEEEEECCCCeEEEEEeCCCCCEE
Q 047260          606 DLFCFCDNDN--EIQYWSINPFLCTHITK--GGTAQVRFQPRIGQLLAAASD-K--VVSIFDIETDRQTHSLQGHAELVN  678 (784)
Q Consensus       606 ~ll~sgs~dg--~I~iwDl~~~~~~~~~~--~~v~~v~fsp~~~~Ll~~s~D-g--~I~IwDl~t~~~i~~l~~h~~~V~  678 (784)
                      .++++.+.+|  .|++||+++........  ..+....|+|+++.|+.++.+ +  .|+++|+.+++.. .+..+...+.
T Consensus       256 ~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~  334 (429)
T PRK03629        256 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQ  334 (429)
T ss_pred             EEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCcc
Confidence            8887766555  58999998776555443  356778999999998877764 4  4555577766443 3333444566


Q ss_pred             EEEEcCCCCEEEEEeC--C--eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCC---eEEEEECCCCceEE
Q 047260          679 YICWDTNGDYLASVSQ--N--LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGIS---SLELWNMAENKSMT  751 (784)
Q Consensus       679 sl~~spdg~~Lasgsd--d--~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg---~I~Iwdl~~~~~~~  751 (784)
                      ..+|+|||++|+..+.  +  .|.+||+.+++.. .+... .......|+|||++|+.++.++   .+.++++.......
T Consensus       335 ~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~  412 (429)
T PRK03629        335 DADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKAR  412 (429)
T ss_pred             CEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCeEE
Confidence            7899999999887652  2  6899999888643 34322 2335678999999999999876   47888987777777


Q ss_pred             ecccCCceEEEEEeC
Q 047260          752 IAAHENIISALAQSP  766 (784)
Q Consensus       752 ~~~h~~~V~slafsp  766 (784)
                      +..|.+.+...+|+|
T Consensus       413 l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        413 LPATDGQVKFPAWSP  427 (429)
T ss_pred             CccCCCCcCCcccCC
Confidence            888889999999987

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.61  E-value=1.9e-13  Score=142.48  Aligned_cols=228  Identities=14%  Similarity=0.242  Sum_probs=174.4

Q ss_pred             CCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCC--CeEEEEeCCCCe
Q 047260          549 KSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDND--NEIQYWSINPFL  626 (784)
Q Consensus       549 ~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~d--g~I~iwDl~~~~  626 (784)
                      ...+..+.|+.+...|..|+.|| .++|..+....+.... .....|..+-|+..   +++..+.+  ..+++++++...
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~-~~~~~IvEmLFSSS---LvaiV~~~qpr~Lkv~~~Kk~~   79 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKD-TEGVSIVEMLFSSS---LVAIVSIKQPRKLKVVHFKKKT   79 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhccc-CCCeEEEEeecccc---eeEEEecCCCceEEEEEcccCc
Confidence            34677788999999999999988 6788877644322211 22334566666643   55544433  458999988654


Q ss_pred             e--EEeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeC---CCCCEEEEEEcCCCCEEEEEe---CCeEE
Q 047260          627 C--THITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQG---HAELVNYICWDTNGDYLASVS---QNLVK  698 (784)
Q Consensus       627 ~--~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~---h~~~V~sl~~spdg~~Lasgs---dd~I~  698 (784)
                      .  ...+...|.+|.++.  ++|+++-.+. |+|||+++.+.++++..   +...+.++.+++.+.||+.-+   .+.|.
T Consensus        80 ~ICe~~fpt~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~  156 (391)
T KOG2110|consen   80 TICEIFFPTSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVV  156 (391)
T ss_pred             eEEEEecCCceEEEEEcc--ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEE
Confidence            4  455567788888865  4566665544 99999999999998864   344566666666777888754   34999


Q ss_pred             EEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCe-EEEEECCCCceE-Eecc--cCCceEEEEEeCCCCEEEEE
Q 047260          699 VWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISS-LELWNMAENKSM-TIAA--HENIISALAQSPVTGMVASA  774 (784)
Q Consensus       699 IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~-I~Iwdl~~~~~~-~~~~--h~~~V~slafspdg~~LaSg  774 (784)
                      |||+.+-+.+..+..|.+.+-+++|+++|.+|++++..|+ |+||.+.++..+ .+..  -...|.+|+|++++.+|++.
T Consensus       157 l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~s  236 (391)
T KOG2110|consen  157 LFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAAS  236 (391)
T ss_pred             EEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEe
Confidence            9999999999999999999999999999999999999995 899999999887 3332  24568999999999999999


Q ss_pred             ECCCcEEEeC
Q 047260          775 SHDSSVKLWK  784 (784)
Q Consensus       775 s~DG~V~IWd  784 (784)
                      |..++|.||+
T Consensus       237 S~TeTVHiFK  246 (391)
T KOG2110|consen  237 SNTETVHIFK  246 (391)
T ss_pred             cCCCeEEEEE
Confidence            9999999985

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.61  E-value=3.2e-14  Score=161.46  Aligned_cols=217  Identities=17%  Similarity=0.190  Sum_probs=156.9

Q ss_pred             eEeecCCCceEEEEEcCCCCEEEEEeCC---CeEEEEECCCCce--eeecCCCCCCeEEEEEccCCCEEEEEe-CCCeEE
Q 047260          501 GCIRSRNSKVTCCHFSSDGKLLASSGHD---RKVVLWNMDTLQT--ESTPEDHKSVVTDVRFRPNSSQLATAS-VDKSVR  574 (784)
Q Consensus       501 ~~l~~H~~~V~~l~fspdg~~Lasgs~D---g~I~IWd~~t~~~--~~~l~~h~~~It~i~fspdg~~Latgs-~Dg~I~  574 (784)
                      ..+..|...|.+.+|+|||+.|+.++.+   ..|++||+.+++.  +..+.+|   ..+++|+|||+.|++++ .+|.+.
T Consensus       197 ~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~  273 (429)
T PRK01742        197 FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVLN  273 (429)
T ss_pred             eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCcEE
Confidence            3455688889999999999999887654   3699999988754  3333333   44789999999888765 688766


Q ss_pred             EE--cCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCC--CeeEEeecCCeeEEEEecCCCEEEEE
Q 047260          575 LW--DAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINP--FLCTHITKGGTAQVRFQPRIGQLLAA  650 (784)
Q Consensus       575 IW--dl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~--~~~~~~~~~~v~~v~fsp~~~~Ll~~  650 (784)
                      ||  |+.++.  ...+..+...+.++.|+|++..++++++.++...+|+++.  .......... ....|+|+++.|+++
T Consensus       274 Iy~~d~~~~~--~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~-~~~~~SpDG~~ia~~  350 (429)
T PRK01742        274 IYVMGANGGT--PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG-YSAQISADGKTLVMI  350 (429)
T ss_pred             EEEEECCCCC--eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC-CCccCCCCCCEEEEE
Confidence            65  555543  3445566777889999999998888877788888887643  2222211112 457899999999888


Q ss_pred             ECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeC-CeEEEEeC--CCCceEEEeccCCCceEEEEEecC
Q 047260          651 ASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQ-NLVKVWSM--ASGECIQELSSNGNQFHSCVFHPS  726 (784)
Q Consensus       651 s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsd-d~I~IwDl--~t~~~i~~l~~~~~~I~sl~fspd  726 (784)
                      +.++ +.+||+.+++.......+  ....+.|+|+|++|+.++. +.+.+|++  .++..+..+..+.+.+..++|+|-
T Consensus       351 ~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        351 NGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             cCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence            7754 666999988654332222  3356789999999998874 46666665  467888889888888899999985

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.60  E-value=1.4e-14  Score=153.34  Aligned_cols=192  Identities=21%  Similarity=0.276  Sum_probs=151.4

Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeec-c
Q 047260          511 TCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAY-T  589 (784)
Q Consensus       511 ~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~-~  589 (784)
                      .+++|+.+|..|++|+.||++|||++.+...+.....|...|.++.|+|||++|++.+.| ..+||+++++....... .
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~  226 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF  226 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence            789999999999999999999999998888888888999999999999999999999999 89999999875322222 2


Q ss_pred             CCCCCeEEEEEcCCC---Cc-EEEEEeCCCeEEEEeCCCCee--------EEeecCCeeEEEEecCCCEEEEEECCCcEE
Q 047260          590 GHSSPIMSLDFHPKK---TD-LFCFCDNDNEIQYWSINPFLC--------THITKGGTAQVRFQPRIGQLLAAASDKVVS  657 (784)
Q Consensus       590 ~h~~~V~sl~~sp~~---~~-ll~sgs~dg~I~iwDl~~~~~--------~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~  657 (784)
                      +.+..+..+.|..++   .. +++.-...+.|+.||+.....        .......+++++++.+|++++.|+.||.|.
T Consensus       227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa  306 (398)
T KOG0771|consen  227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA  306 (398)
T ss_pred             ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence            334456677777665   22 233334456677776643211        111125789999999999999999999999


Q ss_pred             EEECCCCeEEEEEe-CCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCC
Q 047260          658 IFDIETDRQTHSLQ-GHAELVNYICWDTNGDYLASVSQN-LVKVWSMA  703 (784)
Q Consensus       658 IwDl~t~~~i~~l~-~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~  703 (784)
                      |++..+.+.++.++ .|...|+.+.|+|+.+++++.+.+ .+.|..+.
T Consensus       307 i~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~  354 (398)
T KOG0771|consen  307 IYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA  354 (398)
T ss_pred             EEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence            99999988877765 599999999999999999987755 66666553

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.59  E-value=8.5e-14  Score=151.48  Aligned_cols=273  Identities=15%  Similarity=0.179  Sum_probs=201.7

Q ss_pred             cCCCceEEEEEcCCCCEE-EEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcc
Q 047260          505 SRNSKVTCCHFSSDGKLL-ASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNF  583 (784)
Q Consensus       505 ~H~~~V~~l~fspdg~~L-asgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~  583 (784)
                      +|...-+.|..+|||.|+ |||...-.|+|||+....+...-.-....|.-.-++.|-..++.-..|.+|-+..--....
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy  128 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY  128 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence            477888999999999975 6777888999999987655433222234555555565666666667788887765432111


Q ss_pred             eeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEEEECCCcEEEEE
Q 047260          584 CSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLAAASDKVVSIFD  660 (784)
Q Consensus       584 ~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~~s~Dg~I~IwD  660 (784)
                      ..    .-......++++.-...+++.|+ ...|+-++++.+..+..+.   +.+.+|.+++....|++|+.+|.|..||
T Consensus       129 ~~----RIP~~GRDm~y~~~scDly~~gs-g~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwD  203 (703)
T KOG2321|consen  129 RT----RIPKFGRDMKYHKPSCDLYLVGS-GSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWD  203 (703)
T ss_pred             ee----ecCcCCccccccCCCccEEEeec-CcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEec
Confidence            11    11233456677665555666554 6778888999887776665   6789999999999999999999999999


Q ss_pred             CCCCeEEEEEeC------CCC-----CEEEEEEcCCCCEEEEEe-CCeEEEEeCCCCceEEEec-cCCCceEEEEEecCC
Q 047260          661 IETDRQTHSLQG------HAE-----LVNYICWDTNGDYLASVS-QNLVKVWSMASGECIQELS-SNGNQFHSCVFHPSY  727 (784)
Q Consensus       661 l~t~~~i~~l~~------h~~-----~V~sl~~spdg~~Lasgs-dd~I~IwDl~t~~~i~~l~-~~~~~I~sl~fspdg  727 (784)
                      .+....+..+..      |.+     .|+++.|+.+|-.+++|. +|.|.|||+++.+++..-. ...-+|..+.|.+.+
T Consensus       204 pR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~  283 (703)
T KOG2321|consen  204 PRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTD  283 (703)
T ss_pred             chhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccC
Confidence            998776665542      222     499999999999999987 5599999999988765443 345678899997764


Q ss_pred             CEEEEEECC-CeEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEECCCcEEE
Q 047260          728 STLLVVGGI-SSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKL  782 (784)
Q Consensus       728 ~~L~s~s~d-g~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs~DG~V~I  782 (784)
                      ..-.+.+.| ..++|||-.+++..........++.+|+-|++.+++++-.++.+..
T Consensus       284 ~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~  339 (703)
T KOG2321|consen  284 QQNKVVSMDKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHT  339 (703)
T ss_pred             CCceEEecchHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCccee
Confidence            333333334 5899999999999988877788999999999999999988876643

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.59  E-value=1.3e-13  Score=141.35  Aligned_cols=268  Identities=16%  Similarity=0.268  Sum_probs=194.9

Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEE-eCCCeEEEEcCCCCcceeeeccC
Q 047260          512 CCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATA-SVDKSVRLWDAANPNFCSQAYTG  590 (784)
Q Consensus       512 ~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latg-s~Dg~I~IWdl~~~~~~~~~~~~  590 (784)
                      -++|||+|+++|+++.. .+.|-|.++.+....+. .-..|.-|.|..|..+++++ ..|+.|.+|++...+...+ +..
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~-cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ck-Ide   89 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFL-CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCK-IDE   89 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHH-HHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEE-ecc
Confidence            46899999999998866 79999999877766553 24567889999888777665 5678999999998875444 444


Q ss_pred             CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEe--ecCCeeEEEEecCCCEEEEEEC-C--------------
Q 047260          591 HSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHI--TKGGTAQVRFQPRIGQLLAAAS-D--------------  653 (784)
Q Consensus       591 h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~--~~~~v~~v~fsp~~~~Ll~~s~-D--------------  653 (784)
                      ....+.+++|+|+|+.++.+...+-.|.+|.+.+.++...  .+..+..++|+|+|.+.+.++. |              
T Consensus        90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~  169 (447)
T KOG4497|consen   90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWI  169 (447)
T ss_pred             CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHH
Confidence            5678999999999999999999999999999998666543  3466678889999887766553 2              


Q ss_pred             ---------------------CcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEE--
Q 047260          654 ---------------------KVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQ--  709 (784)
Q Consensus       654 ---------------------g~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~--  709 (784)
                                           ..+.+||.--.-.+..+. ..-.+..+.|+|.+++|++|+.| .++|.+--+.+.+.  
T Consensus       170 ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~ef  248 (447)
T KOG4497|consen  170 LLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEF  248 (447)
T ss_pred             HHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhh
Confidence                                 123333322111111111 23468889999999999999965 77765432211110  


Q ss_pred             ----------------------------------------------------------Eec------cCCCceEEEEEec
Q 047260          710 ----------------------------------------------------------ELS------SNGNQFHSCVFHP  725 (784)
Q Consensus       710 ----------------------------------------------------------~l~------~~~~~I~sl~fsp  725 (784)
                                                                                .++      .....+..++|++
T Consensus       249 lhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~  328 (447)
T KOG4497|consen  249 LHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSC  328 (447)
T ss_pred             ccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecC
Confidence                                                                      000      0112356789999


Q ss_pred             CCCEEEEEECC--CeEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEECCCcEEEe
Q 047260          726 SYSTLLVVGGI--SSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKLW  783 (784)
Q Consensus       726 dg~~L~s~s~d--g~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs~DG~V~IW  783 (784)
                      |..++++-.+.  ..+-+||+...+...+.....+|.+..|+|....|+.+....++++|
T Consensus       329 Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~srLY~W  388 (447)
T KOG4497|consen  329 DSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFW  388 (447)
T ss_pred             CceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCceEEEE
Confidence            99888777654  57999999998887777778899999999998888888777778888

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.58  E-value=3.5e-15  Score=167.63  Aligned_cols=266  Identities=18%  Similarity=0.271  Sum_probs=200.0

Q ss_pred             CCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCCCEEEEEeCCC
Q 047260          450 IDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDR  529 (784)
Q Consensus       450 ~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg  529 (784)
                      ..+.+.+|+.|.-|++|...+.                          .++...+||.+.|+.++.+.+..++|+++.|.
T Consensus       201 tg~~Iitgsdd~lvKiwS~et~--------------------------~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~  254 (1113)
T KOG0644|consen  201 TGRYIITGSDDRLVKIWSMETA--------------------------RCLASCRGHSGDITDLAVSSNNTMIAAASNDK  254 (1113)
T ss_pred             ccceEeecCccceeeeeeccch--------------------------hhhccCCCCccccchhccchhhhhhhhcccCc
Confidence            4445557999999999964322                          23456789999999999999999999999999


Q ss_pred             eEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCC-CCcc-eeeecc-CCCCCeEEEEEcCCCCc
Q 047260          530 KVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAA-NPNF-CSQAYT-GHSSPIMSLDFHPKKTD  606 (784)
Q Consensus       530 ~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~-~~~~-~~~~~~-~h~~~V~sl~~sp~~~~  606 (784)
                      .|++|.+.++.++..+.+|++.|++|+|+|-.    +.+.||++++||.+ .... ...... .....+.++.|...+. 
T Consensus       255 vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~-  329 (1113)
T KOG0644|consen  255 VIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGD-  329 (1113)
T ss_pred             eEEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccc-
Confidence            99999999999999999999999999999954    77899999999988 2110 111111 1224455666665554 


Q ss_pred             EEEEEeCCCeEEEEeCCCCeeEEeecCCeeEEEEecCC-CEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCC
Q 047260          607 LFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRI-GQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTN  685 (784)
Q Consensus       607 ll~sgs~dg~I~iwDl~~~~~~~~~~~~v~~v~fsp~~-~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spd  685 (784)
                      -+.+++.|+.-..|.+....+....   +.-+.++.+. .+.+++-.+-.+++|++.++...+.+.+|...+..+.++|-
T Consensus       330 ~f~Tgs~d~ea~n~e~~~l~~~~~~---lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpf  406 (1113)
T KOG0644|consen  330 RFLTGSRDGEARNHEFEQLAWRSNL---LIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPF  406 (1113)
T ss_pred             ccccccCCcccccchhhHhhhhccc---eEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCC
Confidence            6778899998888876532211110   0111111111 34555666888999999999999999999999999999996


Q ss_pred             CCEEE-EEe-CCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCce
Q 047260          686 GDYLA-SVS-QNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKS  749 (784)
Q Consensus       686 g~~La-sgs-dd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~  749 (784)
                      +..++ +++ |+.+.|||+-.|.+++.+......+...+|+++|..++....-|.++|.....++.
T Consensus       407 n~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s  472 (1113)
T KOG0644|consen  407 NPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKS  472 (1113)
T ss_pred             CcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCcc
Confidence            66554 344 66999999999988887766678889999999999998888889999987765543

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.58  E-value=1e-13  Score=151.59  Aligned_cols=231  Identities=19%  Similarity=0.315  Sum_probs=162.0

Q ss_pred             EcCCCCEEEE--EeCCCeEEEEECCC-Cceeee-cC--CCCCCeEEEEEcc-CCCEEEEEeCCCeEEEEcCCCCcc----
Q 047260          515 FSSDGKLLAS--SGHDRKVVLWNMDT-LQTEST-PE--DHKSVVTDVRFRP-NSSQLATASVDKSVRLWDAANPNF----  583 (784)
Q Consensus       515 fspdg~~Las--gs~Dg~I~IWd~~t-~~~~~~-l~--~h~~~It~i~fsp-dg~~Latgs~Dg~I~IWdl~~~~~----  583 (784)
                      |+.+.+++|+  ++..|.|-||++.. |++... +.  .....|+++.|.| |...|+++++||.|++|.+..+..    
T Consensus       587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~  666 (1012)
T KOG1445|consen  587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENE  666 (1012)
T ss_pred             eeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCccc
Confidence            3445556654  56679999999974 222111 11  2456799999999 888999999999999999976542    


Q ss_pred             --eeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCCeeEEEEecCCCEEEEEECCCcEEEEEC
Q 047260          584 --CSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDI  661 (784)
Q Consensus       584 --~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl  661 (784)
                        ....+..|...|+++.|+|-..                                       +.|++++.|-+|++||+
T Consensus       667 ~tPe~~lt~h~eKI~slRfHPLAa---------------------------------------dvLa~asyd~Ti~lWDl  707 (1012)
T KOG1445|consen  667 MTPEKILTIHGEKITSLRFHPLAA---------------------------------------DVLAVASYDSTIELWDL  707 (1012)
T ss_pred             CCcceeeecccceEEEEEecchhh---------------------------------------hHhhhhhccceeeeeeh
Confidence              3455667777788888777433                                       34566677888888888


Q ss_pred             CCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCc-eEEEeccC-CCceEEEEEecCCCEEEEEECCC-
Q 047260          662 ETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGE-CIQELSSN-GNQFHSCVFHPSYSTLLVVGGIS-  737 (784)
Q Consensus       662 ~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~-~i~~l~~~-~~~I~sl~fspdg~~L~s~s~dg-  737 (784)
                      .+.+....+.+|.+.|..++|+|+|+.+++.+.| +|+||+.++++ .+.+-.+. +..--.+.|.-+|+++++.+-|. 
T Consensus       708 ~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~  787 (1012)
T KOG1445|consen  708 ANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKS  787 (1012)
T ss_pred             hhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEeccccc
Confidence            8888888999999999999999999999998855 99999998864 45444332 23345778999999999998874 


Q ss_pred             ---eEEEEECCCCce--EEec--ccCCceEEEEEeCCCC-EEEEEECCCcEEEeC
Q 047260          738 ---SLELWNMAENKS--MTIA--AHENIISALAQSPVTG-MVASASHDSSVKLWK  784 (784)
Q Consensus       738 ---~I~Iwdl~~~~~--~~~~--~h~~~V~slafspdg~-~LaSgs~DG~V~IWd  784 (784)
                         .|.+||..+-..  +...  ...-.+.--.+.+|.+ +|++|-.|..|.+|+
T Consensus       788 SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yE  842 (1012)
T KOG1445|consen  788 SERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYE  842 (1012)
T ss_pred             chhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEE
Confidence               588888765431  1111  1111111223445554 566777788888764

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.58  E-value=4.6e-13  Score=152.24  Aligned_cols=232  Identities=15%  Similarity=0.138  Sum_probs=167.6

Q ss_pred             CeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCC---CeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCC
Q 047260          529 RKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVD---KSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKT  605 (784)
Q Consensus       529 g~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~D---g~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~  605 (784)
                      ..|.+||... .....+..+...+.+.+|+||++.|+.++.+   ..|.+||+.++..  ..+..+.+...++.|+|++.
T Consensus       184 ~~l~i~D~~g-~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~--~~l~~~~g~~~~~~~SpDG~  260 (433)
T PRK04922        184 YALQVADSDG-YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR--ELVASFRGINGAPSFSPDGR  260 (433)
T ss_pred             EEEEEECCCC-CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE--EEeccCCCCccCceECCCCC
Confidence            4689999864 4445566677889999999999999988754   4699999987652  22333445566889999999


Q ss_pred             cEEEEEeCCC--eEEEEeCCCCeeEEeec--CCeeEEEEecCCCEEEEEEC-CCc--EEEEECCCCeEEEEEeCCCCCEE
Q 047260          606 DLFCFCDNDN--EIQYWSINPFLCTHITK--GGTAQVRFQPRIGQLLAAAS-DKV--VSIFDIETDRQTHSLQGHAELVN  678 (784)
Q Consensus       606 ~ll~sgs~dg--~I~iwDl~~~~~~~~~~--~~v~~v~fsp~~~~Ll~~s~-Dg~--I~IwDl~t~~~i~~l~~h~~~V~  678 (784)
                      .++++.+.+|  .|++||+.+........  ......+|+|+++.|+.++. ++.  |+++|+.+++... +..+.....
T Consensus       261 ~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~  339 (433)
T PRK04922        261 RLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNA  339 (433)
T ss_pred             EEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCcc
Confidence            8887776665  59999998776544333  23467899999999888775 444  7777877765433 222334455


Q ss_pred             EEEEcCCCCEEEEEe-C-C--eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECC---CeEEEEECCCCceEE
Q 047260          679 YICWDTNGDYLASVS-Q-N--LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGI---SSLELWNMAENKSMT  751 (784)
Q Consensus       679 sl~~spdg~~Lasgs-d-d--~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~d---g~I~Iwdl~~~~~~~  751 (784)
                      .++|+|+|++|+..+ + +  .|.+||+.+++.. .+.. ........|+|++++|+..+.+   +.|.++++..+....
T Consensus       340 ~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~-~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~  417 (433)
T PRK04922        340 RASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTP-GSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVRQR  417 (433)
T ss_pred             CEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEE
Confidence            789999999988765 2 2  6999999887654 3432 2244567999999998887764   368888997766666


Q ss_pred             ecccCCceEEEEEeC
Q 047260          752 IAAHENIISALAQSP  766 (784)
Q Consensus       752 ~~~h~~~V~slafsp  766 (784)
                      +..+.+.+...+|+|
T Consensus       418 l~~~~g~~~~p~wsp  432 (433)
T PRK04922        418 LVSADGEVREPAWSP  432 (433)
T ss_pred             cccCCCCCCCCccCC
Confidence            666777788888886

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.57  E-value=7.1e-15  Score=156.46  Aligned_cols=261  Identities=16%  Similarity=0.226  Sum_probs=208.0

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeec
Q 047260          509 KVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAY  588 (784)
Q Consensus       509 ~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~  588 (784)
                      .-..+.++.+|++|+.|+..|.|..+|+.+.++...+. -...|.++.|..+..+||++ ....+.|||-...  .+..+
T Consensus       131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~Gt--ElHCl  206 (545)
T KOG1272|consen  131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVA-QKKYVYVYDNNGT--ELHCL  206 (545)
T ss_pred             CCeeeeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhh-hhceEEEecCCCc--EEeeh
Confidence            46778999999999999999999999999999888874 45679999999888877776 4578999997642  34444


Q ss_pred             cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEEEECCCcEEEEECCCCe
Q 047260          589 TGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLAAASDKVVSIFDIETDR  665 (784)
Q Consensus       589 ~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~  665 (784)
                      ..| ..|..+.|.|.. ++|++++..|.++.-|+..++.+..+.   +.+..++-+|....+-+|...|+|.+|.....+
T Consensus       207 k~~-~~v~rLeFLPyH-fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~ske  284 (545)
T KOG1272|consen  207 KRH-IRVARLEFLPYH-FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKE  284 (545)
T ss_pred             hhc-Cchhhhcccchh-heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcc
Confidence            444 568999999985 588999999999999999988776554   677788889999999999999999999999999


Q ss_pred             EEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEE-
Q 047260          666 QTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWN-  743 (784)
Q Consensus       666 ~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwd-  743 (784)
                      ++..+..|.++|.+|++.++|.|+++.+-| .|+|||++....+.++.. ......+++|..|  +++++....|.||. 
T Consensus       285 PLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw~d  361 (545)
T KOG1272|consen  285 PLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQIWKD  361 (545)
T ss_pred             hHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc--ceeeecCCeeeeehh
Confidence            999999999999999999999999998855 999999999887777765 3556777887665  55555556899994 


Q ss_pred             CCCC--c-eEEeccc--CCceEEEEEeCCCCEEEEEECCC
Q 047260          744 MAEN--K-SMTIAAH--ENIISALAQSPVTGMVASASHDS  778 (784)
Q Consensus       744 l~~~--~-~~~~~~h--~~~V~slafspdg~~LaSgs~DG  778 (784)
                      .-.+  . ...+..|  .+.|..+.|+|-..+|-.|-.-|
T Consensus       362 ~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G  401 (545)
T KOG1272|consen  362 ALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG  401 (545)
T ss_pred             hhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence            2221  1 1122233  45899999999776666554433

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.57  E-value=1.7e-13  Score=157.61  Aligned_cols=242  Identities=14%  Similarity=0.217  Sum_probs=175.9

Q ss_pred             CCCceEEEEEcC--CCCEEEEEeCCCeEEEEECC-C----CceeeecCC-------CCCCeEEEEEccCCCEEEEEeCCC
Q 047260          506 RNSKVTCCHFSS--DGKLLASSGHDRKVVLWNMD-T----LQTESTPED-------HKSVVTDVRFRPNSSQLATASVDK  571 (784)
Q Consensus       506 H~~~V~~l~fsp--dg~~Lasgs~Dg~I~IWd~~-t----~~~~~~l~~-------h~~~It~i~fspdg~~Latgs~Dg  571 (784)
                      ....|+.+.+-.  |..+|++|+.||.|+||+-. +    .+.+..+.+       ..+.=.-+.|.....+|++++.-.
T Consensus      1108 ~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r 1187 (1387)
T KOG1517|consen 1108 PDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVR 1187 (1387)
T ss_pred             CCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCee
Confidence            345688888866  55689999999999999743 2    223322211       111114467877666777777789


Q ss_pred             eEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe------eEEeecC--CeeEEEEecC
Q 047260          572 SVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFL------CTHITKG--GTAQVRFQPR  643 (784)
Q Consensus       572 ~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~------~~~~~~~--~v~~v~fsp~  643 (784)
                      .|+|||+.....+...-.+....|+++.-+-.+..++++|..||.|++||.+...      ..+.+..  +|..+.+.+.
T Consensus      1188 ~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~ 1267 (1387)
T KOG1517|consen 1188 SIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQ 1267 (1387)
T ss_pred             EEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecC
Confidence            9999999987766555556677788888776666799999999999999997421      2233333  3788888886


Q ss_pred             CC-EEEEEECCCcEEEEECCCCeEE--EEEeCCC--C-CEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEEEecc----
Q 047260          644 IG-QLLAAASDKVVSIFDIETDRQT--HSLQGHA--E-LVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELSS----  713 (784)
Q Consensus       644 ~~-~Ll~~s~Dg~I~IwDl~t~~~i--~~l~~h~--~-~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~~l~~----  713 (784)
                      |- .|++|+.+|.|++||++.....  ..+..|.  + .++++..+++..++++|+...|+||++... .+..++.    
T Consensus      1268 G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G~-~l~~~k~n~~F 1346 (1387)
T KOG1517|consen 1268 GLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSGE-QLNIIKYNPGF 1346 (1387)
T ss_pred             CCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCcceEEEEecChh-hhcccccCccc
Confidence            64 5999999999999999984222  2223333  3 599999999999999999999999998643 3333322    


Q ss_pred             ---CCCceEEEEEecCCCEEEEEECCCeEEEEECCCCc
Q 047260          714 ---NGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENK  748 (784)
Q Consensus       714 ---~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~  748 (784)
                         ....+.|++|||..-.+++|+.|..|.||......
T Consensus      1347 ~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1347 MGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             ccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence               23457999999999999999999999999876543

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.57  E-value=1e-12  Score=149.54  Aligned_cols=232  Identities=15%  Similarity=0.179  Sum_probs=167.8

Q ss_pred             CeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeC---CCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCC
Q 047260          529 RKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASV---DKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKT  605 (784)
Q Consensus       529 g~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~---Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~  605 (784)
                      ..|.+||.+. .....+..|...+.+.+|+|||+.|+..+.   +..|.+||+.++..  ..+..+.+.+.+..|+|++.
T Consensus       182 ~~l~~~d~dg-~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~--~~l~~~~g~~~~~~~SPDG~  258 (435)
T PRK05137        182 KRLAIMDQDG-ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR--ELVGNFPGMTFAPRFSPDGR  258 (435)
T ss_pred             eEEEEECCCC-CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE--EEeecCCCcccCcEECCCCC
Confidence            4788999864 444566678889999999999999988764   46899999987652  33445566778899999999


Q ss_pred             cEEEEEeCCCe--EEEEeCCCCeeEEeec--CCeeEEEEecCCCEEEEEEC-C--CcEEEEECCCCeEEEEEeCCCCCEE
Q 047260          606 DLFCFCDNDNE--IQYWSINPFLCTHITK--GGTAQVRFQPRIGQLLAAAS-D--KVVSIFDIETDRQTHSLQGHAELVN  678 (784)
Q Consensus       606 ~ll~sgs~dg~--I~iwDl~~~~~~~~~~--~~v~~v~fsp~~~~Ll~~s~-D--g~I~IwDl~t~~~i~~l~~h~~~V~  678 (784)
                      .++++.+.++.  |++||+.+........  .......|+|+++.|+..+. +  ..|+++|+..++.. .+..+...+.
T Consensus       259 ~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~~~~  337 (435)
T PRK05137        259 KVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGGGRYS  337 (435)
T ss_pred             EEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCCCccc
Confidence            88888776665  7778988766554433  33566899999999887775 3  36888898766543 3333455667


Q ss_pred             EEEEcCCCCEEEEEeC--C--eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECC------CeEEEEECCCCc
Q 047260          679 YICWDTNGDYLASVSQ--N--LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGI------SSLELWNMAENK  748 (784)
Q Consensus       679 sl~~spdg~~Lasgsd--d--~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~d------g~I~Iwdl~~~~  748 (784)
                      ...|+|+|++|+....  +  .|.+||+..+. ...+.. ...+....|+|||+.|+..+.+      ..|+++|+..+.
T Consensus       338 ~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~  415 (435)
T PRK05137        338 TPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN  415 (435)
T ss_pred             CeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEeccC-CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc
Confidence            7899999999987652  2  78899986554 333432 2346788999999998876653      258888987776


Q ss_pred             eEEecccCCceEEEEEeCC
Q 047260          749 SMTIAAHENIISALAQSPV  767 (784)
Q Consensus       749 ~~~~~~h~~~V~slafspd  767 (784)
                      ...+. ..+.+...+|+|-
T Consensus       416 ~~~l~-~~~~~~~p~Wsp~  433 (435)
T PRK05137        416 EREVP-TPGDASDPAWSPL  433 (435)
T ss_pred             eEEcc-CCCCccCcccCCC
Confidence            65444 3555777788763

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.57  E-value=3.6e-14  Score=152.94  Aligned_cols=226  Identities=15%  Similarity=0.176  Sum_probs=173.2

Q ss_pred             CCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCe-EEEEEcC------CCCcEEEEEeCCCeEEE
Q 047260          547 DHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPI-MSLDFHP------KKTDLFCFCDNDNEIQY  619 (784)
Q Consensus       547 ~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V-~sl~~sp------~~~~ll~sgs~dg~I~i  619 (784)
                      .|...|.|+.|+.+...+++++++-.++-||+.+........  ....| +.+..-+      .+...|+.|+.||.+.+
T Consensus        12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~--p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~i   89 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKL--PDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVI   89 (737)
T ss_pred             ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhC--CcccCCccccccccccCCCCCcceEEEEcCCceEEE
Confidence            567778899999877766666555555555665433211111  11111 1111111      23457888899999998


Q ss_pred             EeCCC--CeeEEeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeE
Q 047260          620 WSINP--FLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQNLV  697 (784)
Q Consensus       620 wDl~~--~~~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd~I  697 (784)
                      .+-..  .+.+..+.+.+.+-+|+|+|.-|++++.||.|++|.- +|-...++.....+|.|++|.|+.+-++.+..+.+
T Consensus        90 l~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~  168 (737)
T KOG1524|consen   90 LNKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHI  168 (737)
T ss_pred             ecccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEecCCeE
Confidence            87653  3445566788889999999999999999999999984 35444445557789999999999998888888888


Q ss_pred             EEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEEC
Q 047260          698 KVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASH  776 (784)
Q Consensus       698 ~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs~  776 (784)
                      .|=.+.....+..++.|++-|.+|.|++....|++|+.|-..+|||-..........|+-+|++++|.|+ +.++.++.
T Consensus       169 ~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~  246 (737)
T KOG1524|consen  169 SIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KDYLLWSY  246 (737)
T ss_pred             EEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccCChhccceeeeeeccc-cceeeeee
Confidence            8888888888889999999999999999999999999999999999988888888899999999999999 66666664

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.57  E-value=1.9e-13  Score=144.79  Aligned_cols=266  Identities=14%  Similarity=0.176  Sum_probs=176.9

Q ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCccee
Q 047260          506 RNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCS  585 (784)
Q Consensus       506 H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~  585 (784)
                      -.-+|.|+.|-+...+|+.|+.+..     -+      +-..+.-...++.+.+.+..=..+ .-..|.+.|.+......
T Consensus        12 ~g~PiYa~~~i~s~~llvagggg~~-----~~------~~~~n~vssl~~~~~~g~~~~~~~-~~~~i~~~~~d~~~tsl   79 (398)
T KOG0771|consen   12 VGFPIYAAKWINSRHLLVAGGGGQA-----AK------TGIGNSVSSLHLVLTGGGGKGRSG-ISSEIHIFDTDDMPTSL   79 (398)
T ss_pred             cCCceEEEEeeCCCceEEEeccCcc-----cc------cCCCCcceeEEEEecCCCcccccc-cceeeEeeecCCcchhh
Confidence            3446999999999888887765543     00      011122222334444422111110 01235555544321111


Q ss_pred             ee------ccC-CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC-eeE----------EeecCCeeEEEEecCCCEE
Q 047260          586 QA------YTG-HSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPF-LCT----------HITKGGTAQVRFQPRIGQL  647 (784)
Q Consensus       586 ~~------~~~-h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~-~~~----------~~~~~~v~~v~fsp~~~~L  647 (784)
                      ..      ..+ ..........+|.+...++....++....|..-.. .+-          ....+.-.+++|+.++..+
T Consensus        80 s~~~~~~~~vG~~~~~~~~~~~h~~~~~~~~k~~~~~~~~~~e~~~~~d~~~~~~a~v~~~l~~~g~~k~vaf~~~gs~l  159 (398)
T KOG0771|consen   80 SESPGGIILVGCDDGAPYRESVHPNGNGRARKLPSGCECFHFEFVASSDFNAETAANVYQKLVDFGQQKVVAFNGDGSKL  159 (398)
T ss_pred             ccCcCCeeEeccCCCcchhhhccccCCeeeeecCCcccccccccccccccchhhhhhHhHHHhhcCcceEEEEcCCCCEe
Confidence            00      001 11123444556666666665555555444433211 000          0111333789999999999


Q ss_pred             EEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEEEec---------------
Q 047260          648 LAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELS---------------  712 (784)
Q Consensus       648 l~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~~l~---------------  712 (784)
                      ++++.||+++||+......+..+..|...|.++.|+|||++|++.+.+..+||+..++.++....               
T Consensus       160 atgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~  239 (398)
T KOG0771|consen  160 ATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGADSARVWSVNTGAALARKTPFSKDEMFSSCRFSV  239 (398)
T ss_pred             eeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCCceEEEEeccCchhhhcCCcccchhhhhceecc
Confidence            99999999999998888888888889999999999999999999998899999998872221111               


Q ss_pred             ----------------------------c-----------CCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceEEe-
Q 047260          713 ----------------------------S-----------NGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTI-  752 (784)
Q Consensus       713 ----------------------------~-----------~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~-  752 (784)
                                                  .           ....|.+++++++|++++.|+.||.|.|++..+-+++.+ 
T Consensus       240 d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~v  319 (398)
T KOG0771|consen  240 DNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYV  319 (398)
T ss_pred             cCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEee
Confidence                                        0           023678999999999999999999999999999888743 


Q ss_pred             -cccCCceEEEEEeCCCCEEEEEECCCcEEEe
Q 047260          753 -AAHENIISALAQSPVTGMVASASHDSSVKLW  783 (784)
Q Consensus       753 -~~h~~~V~slafspdg~~LaSgs~DG~V~IW  783 (784)
                       ..|...|+.|.|+||.+++++.+.|..+.|.
T Consensus       320 k~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~  351 (398)
T KOG0771|consen  320 KEAHLGFVTGLTFSPDSRYLASVSSDNEAAVT  351 (398)
T ss_pred             hhhheeeeeeEEEcCCcCcccccccCCceeEE
Confidence             4799999999999999999998888877653

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.56  E-value=1.8e-13  Score=148.12  Aligned_cols=242  Identities=17%  Similarity=0.237  Sum_probs=168.2

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcee----eecCCCCCCeEEEEEc-----cCCCEEEEEeCCCeEEEEcCC
Q 047260          509 KVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTE----STPEDHKSVVTDVRFR-----PNSSQLATASVDKSVRLWDAA  579 (784)
Q Consensus       509 ~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~----~~l~~h~~~It~i~fs-----pdg~~Latgs~Dg~I~IWdl~  579 (784)
                      .++...++-.|++|+..- ...++||+...+..+    ....-.....+|-+|+     +++--|+.|-.-|.|.+.|..
T Consensus       125 ~~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~  203 (636)
T KOG2394|consen  125 IVTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPI  203 (636)
T ss_pred             ceeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecch
Confidence            355555666677776543 345888887732211    1111111223444442     355567888788889888876


Q ss_pred             CCcceeeecc----CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCCee--EEEEecCCCEEEEEECC
Q 047260          580 NPNFCSQAYT----GHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTA--QVRFQPRIGQLLAAASD  653 (784)
Q Consensus       580 ~~~~~~~~~~----~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v~--~v~fsp~~~~Ll~~s~D  653 (784)
                      ..+ ..+.+.    -....|+|+.|-|.++.+|++.-.+|.+++||.+-       ....+  +....+++..+.+....
T Consensus       204 ~~~-~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~-------~~~~t~p~~~~~k~~~~f~i~t~k  275 (636)
T KOG2394|consen  204 NFE-VSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI-------VCGATAPSYQALKDGDQFAILTSK  275 (636)
T ss_pred             hhH-HHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccc-------cccCCCCcccccCCCCeeEEeeee
Confidence            532 222221    13478999999999999999999999999998731       11111  12223344444333221


Q ss_pred             CcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEE
Q 047260          654 KVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLV  732 (784)
Q Consensus       654 g~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s  732 (784)
                      +      ..+..++..+....+.|+.++|+|||++||+.+.| .++|||+.+.+++..++..-+...||+|+|||+||++
T Consensus       276 s------k~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvt  349 (636)
T KOG2394|consen  276 S------KKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVT  349 (636)
T ss_pred             c------cccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEe
Confidence            1      11123444444456689999999999999999966 9999999999888888877788999999999999999


Q ss_pred             EECCCeEEEEECCCCceE-EecccCCceEEEEEe
Q 047260          733 VGGISSLELWNMAENKSM-TIAAHENIISALAQS  765 (784)
Q Consensus       733 ~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafs  765 (784)
                      |+.|.-|.||.+.+++.+ .-.+|.+.|+.|+|.
T Consensus       350 GGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD  383 (636)
T KOG2394|consen  350 GGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD  383 (636)
T ss_pred             cCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence            999999999999999988 667999999999998

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.56  E-value=1e-12  Score=134.80  Aligned_cols=270  Identities=14%  Similarity=0.213  Sum_probs=198.2

Q ss_pred             CCceEEEEEcCCCCEEEE-EeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCC-EEEEEeCCCeEEEEcCCCCcce
Q 047260          507 NSKVTCCHFSSDGKLLAS-SGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSS-QLATASVDKSVRLWDAANPNFC  584 (784)
Q Consensus       507 ~~~V~~l~fspdg~~Las-gs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~-~Latgs~Dg~I~IWdl~~~~~~  584 (784)
                      -+.|.-+.|..|..++++ ...|+.|.+|++...+-...+.....++..++|+|||+ +|.+...|-.|.||.+.+.+..
T Consensus        48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~  127 (447)
T KOG4497|consen   48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY  127 (447)
T ss_pred             HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE
Confidence            356888999998876654 56788999999998888888988999999999999995 4566677999999999886533


Q ss_pred             eeeccCCCCCeEEEEEcCCCCcEEEEEeCC-----------------------------------CeEEEEeCCCCeeE-
Q 047260          585 SQAYTGHSSPIMSLDFHPKKTDLFCFCDND-----------------------------------NEIQYWSINPFLCT-  628 (784)
Q Consensus       585 ~~~~~~h~~~V~sl~~sp~~~~ll~sgs~d-----------------------------------g~I~iwDl~~~~~~-  628 (784)
                      ....  ....+..++|+|++.+..+..-.|                                   ..+.+||.--...+ 
T Consensus       128 ~~~~--pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~  205 (447)
T KOG4497|consen  128 LLPH--PKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVY  205 (447)
T ss_pred             Eecc--cccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheee
Confidence            2222  233467788888887443333222                                   23444543222221 


Q ss_pred             -EeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeE-----------------------------------------
Q 047260          629 -HITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQ-----------------------------------------  666 (784)
Q Consensus       629 -~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~-----------------------------------------  666 (784)
                       ....-++..+.|+|.+..|++|+.|+.++|.+--+-+.                                         
T Consensus       206 aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~  285 (447)
T KOG4497|consen  206 AYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLE  285 (447)
T ss_pred             eeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccc
Confidence             12225678899999999999999999888754221110                                         


Q ss_pred             -------------------EEEEe------CCCCCEEEEEEcCCCCEEEEEeCC---eEEEEeCCCCceEEEeccCCCce
Q 047260          667 -------------------THSLQ------GHAELVNYICWDTNGDYLASVSQN---LVKVWSMASGECIQELSSNGNQF  718 (784)
Q Consensus       667 -------------------i~~l~------~h~~~V~sl~~spdg~~Lasgsdd---~I~IwDl~t~~~i~~l~~~~~~I  718 (784)
                                         +..++      ...-.+.-++|++|..|+++-.|+   .+-+||++..+....+ ....+|
T Consensus       286 a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avL-iQk~pi  364 (447)
T KOG4497|consen  286 AHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVL-IQKHPI  364 (447)
T ss_pred             cCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhh-hhccce
Confidence                               00111      112245668999999999999876   7999999877654443 344789


Q ss_pred             EEEEEecCCCEEEEEECCCeEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEECCCc
Q 047260          719 HSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHDSS  779 (784)
Q Consensus       719 ~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs~DG~  779 (784)
                      ....|+|....|+++.+...+++|......++......-.|..+.|.-+|..++-++.|..
T Consensus       365 raf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~~GF~i~~l~W~~~g~~i~l~~kDaf  425 (447)
T KOG4497|consen  365 RAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPKKGFNIQKLQWLQPGEFIVLCGKDAF  425 (447)
T ss_pred             eEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCCCCceeeeEEecCCCcEEEEEcCCce
Confidence            9999999999999999999999999988777766666678999999999999999988853

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.55  E-value=1e-12  Score=142.39  Aligned_cols=196  Identities=20%  Similarity=0.305  Sum_probs=143.1

Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCceeeecC----CCCCCeEEEEEcc-CCCEEEEEeCCCeEEEEcCCCCcceeeeccCC
Q 047260          517 SDGKLLASSGHDRKVVLWNMDTLQTESTPE----DHKSVVTDVRFRP-NSSQLATASVDKSVRLWDAANPNFCSQAYTGH  591 (784)
Q Consensus       517 pdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~----~h~~~It~i~fsp-dg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h  591 (784)
                      +++--|++|-..|.|.+.|....+..+.+.    -.+..|+||.|-| +...++++-.+|.+.+||.....       +.
T Consensus       183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~-------~~  255 (636)
T KOG2394|consen  183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVC-------GA  255 (636)
T ss_pred             CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccc-------cC
Confidence            456668888888999999876533222221    1347899999999 44566777789999999873211       10


Q ss_pred             CCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEe
Q 047260          592 SSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQ  671 (784)
Q Consensus       592 ~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~  671 (784)
                      ..+  +-...+++..+-+-.+    ....+-++..+....++.+..++|+|||.+|++.+.||.++|||..+.+++..++
T Consensus       256 t~p--~~~~~k~~~~f~i~t~----ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mk  329 (636)
T KOG2394|consen  256 TAP--SYQALKDGDQFAILTS----KSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMK  329 (636)
T ss_pred             CCC--cccccCCCCeeEEeee----eccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHH
Confidence            111  1111223321211111    1111224455556667889999999999999999999999999999988887777


Q ss_pred             CCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEec
Q 047260          672 GHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHP  725 (784)
Q Consensus       672 ~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fsp  725 (784)
                      ..-+...|++|+|||+||++|++| .|.||.+..++.+..-.+|.++|..++|.|
T Consensus       330 SYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  330 SYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             hhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence            778899999999999999999966 999999999999999999999999999983

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.55  E-value=3.6e-13  Score=138.95  Aligned_cols=274  Identities=16%  Similarity=0.310  Sum_probs=190.5

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----eeeecCCC------------CCCeEEEEEccCC--CEEEEE
Q 047260          507 NSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQ-----TESTPEDH------------KSVVTDVRFRPNS--SQLATA  567 (784)
Q Consensus       507 ~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~-----~~~~l~~h------------~~~It~i~fspdg--~~Latg  567 (784)
                      .+-|.++.|..+|.+||||+.+|.|.+|.-+...     ....+..|            ...|..|.|.+++  ..++..
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls  104 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS  104 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence            3558999999999999999999999999755322     22233333            3568999999854  467777


Q ss_pred             eCCCeEEEEcCCCCcce----------------------------------eee-ccCCCCCeEEEEEcCCCCcEEEEEe
Q 047260          568 SVDKSVRLWDAANPNFC----------------------------------SQA-YTGHSSPIMSLDFHPKKTDLFCFCD  612 (784)
Q Consensus       568 s~Dg~I~IWdl~~~~~~----------------------------------~~~-~~~h~~~V~sl~~sp~~~~ll~sgs  612 (784)
                      ..|++|++|.+......                                  .+. -..|+..|.+|.++.|... +++ .
T Consensus       105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et-~lS-A  182 (433)
T KOG1354|consen  105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKET-FLS-A  182 (433)
T ss_pred             cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccce-Eee-c
Confidence            88999999988642211                                  011 1367888999999998874 444 4


Q ss_pred             CCCeEEEEeCCC----CeeEEeec-------CCeeEEEEecCC-CEEEEEECCCcEEEEECCCCeEE----EEE------
Q 047260          613 NDNEIQYWSINP----FLCTHITK-------GGTAQVRFQPRI-GQLLAAASDKVVSIFDIETDRQT----HSL------  670 (784)
Q Consensus       613 ~dg~I~iwDl~~----~~~~~~~~-------~~v~~v~fsp~~-~~Ll~~s~Dg~I~IwDl~t~~~i----~~l------  670 (784)
                      +|-.|.+|+++-    ...+.+..       .-|++..|+|.. +.++..++.|+|++.|++...+.    +.+      
T Consensus       183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp  262 (433)
T KOG1354|consen  183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP  262 (433)
T ss_pred             cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence            488999999863    22222221       346777899975 45666777899999999853221    111      


Q ss_pred             ------eCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeC-CCCceEEEeccCC------------Cc---eEEEEEecCCC
Q 047260          671 ------QGHAELVNYICWDTNGDYLASVSQNLVKVWSM-ASGECIQELSSNG------------NQ---FHSCVFHPSYS  728 (784)
Q Consensus       671 ------~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl-~t~~~i~~l~~~~------------~~---I~sl~fspdg~  728 (784)
                            .+--..|..+.|+++|+|+++-.--+|+|||+ ...+++.++..|.            ..   -..|+|+.++.
T Consensus       263 ~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~  342 (433)
T KOG1354|consen  263 SSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDS  342 (433)
T ss_pred             cchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcc
Confidence                  11234678899999999999887779999999 4556777766553            11   25689999999


Q ss_pred             EEEEEECCCeEEEEECCCCceEEe--------------------c--c-------------cCCceEEEEEeCCCCEEEE
Q 047260          729 TLLVVGGISSLELWNMAENKSMTI--------------------A--A-------------HENIISALAQSPVTGMVAS  773 (784)
Q Consensus       729 ~L~s~s~dg~I~Iwdl~~~~~~~~--------------------~--~-------------h~~~V~slafspdg~~LaS  773 (784)
                      ++++|+....+++|++..+.....                    .  +             ....|...+|+|..+.||+
T Consensus       343 ~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~~~~~vd~ldf~kkilh~aWhp~en~ia~  422 (433)
T KOG1354|consen  343 YVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKRDEISVDALDFRKKILHTAWHPKENSIAV  422 (433)
T ss_pred             eEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCccccccccchhhhhhHHHhhccCCccceeee
Confidence            999999999999999665432210                    0  0             0113556789999999998


Q ss_pred             EECCCcEEEe
Q 047260          774 ASHDSSVKLW  783 (784)
Q Consensus       774 gs~DG~V~IW  783 (784)
                      +.... +.||
T Consensus       423 aatnn-lyif  431 (433)
T KOG1354|consen  423 AATNN-LYIF  431 (433)
T ss_pred             eecCc-eEEe
Confidence            87654 4444

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.53  E-value=1.2e-12  Score=148.59  Aligned_cols=233  Identities=14%  Similarity=0.134  Sum_probs=159.4

Q ss_pred             CeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCC---CeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCC
Q 047260          529 RKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVD---KSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKT  605 (784)
Q Consensus       529 g~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~D---g~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~  605 (784)
                      ..|.++|.+ +.....+..+...+.+.+|+|||+.|+..+.+   ..|.+||+.++...  .+....+.+.+..|+|++.
T Consensus       176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~--~l~~~~g~~~~~~~SPDG~  252 (427)
T PRK02889        176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR--VVANFKGSNSAPAWSPDGR  252 (427)
T ss_pred             cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE--EeecCCCCccceEECCCCC
Confidence            457777775 44445555778889999999999999887753   35999999877632  2333345567899999999


Q ss_pred             cEEEEEeCCCeEEEEe--CCCCeeEEee--cCCeeEEEEecCCCEEEEEEC-CCcEEEE--ECCCCeEEEEEeCCCCCEE
Q 047260          606 DLFCFCDNDNEIQYWS--INPFLCTHIT--KGGTAQVRFQPRIGQLLAAAS-DKVVSIF--DIETDRQTHSLQGHAELVN  678 (784)
Q Consensus       606 ~ll~sgs~dg~I~iwD--l~~~~~~~~~--~~~v~~v~fsp~~~~Ll~~s~-Dg~I~Iw--Dl~t~~~i~~l~~h~~~V~  678 (784)
                      .++++.+.++...+|.  +.........  ........|+|+++.|+..+. ++...||  |+..++... +..+.....
T Consensus       253 ~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~g~~~~  331 (427)
T PRK02889        253 TLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFTGSYNT  331 (427)
T ss_pred             EEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-EecCCCCcC
Confidence            8888877787766554  4444333222  233566789999999887665 4555555  444444322 222233345


Q ss_pred             EEEEcCCCCEEEEEeCC----eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCC---eEEEEECCCCceEE
Q 047260          679 YICWDTNGDYLASVSQN----LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGIS---SLELWNMAENKSMT  751 (784)
Q Consensus       679 sl~~spdg~~Lasgsdd----~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg---~I~Iwdl~~~~~~~  751 (784)
                      ...|+|||++|+..+..    .|.+||+.+++... +... .......|+|+++.|+.++.++   .+.+.++.......
T Consensus       332 ~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~~~~  409 (427)
T PRK02889        332 SPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSSDGRIKQR  409 (427)
T ss_pred             ceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCC-CCccCceECCCCCEEEEEEecCCCEEEEEEECCCCceEE
Confidence            67899999999876632    69999998886543 3322 2346789999999998888664   46777775544445


Q ss_pred             ecccCCceEEEEEeCC
Q 047260          752 IAAHENIISALAQSPV  767 (784)
Q Consensus       752 ~~~h~~~V~slafspd  767 (784)
                      +..+.+.+...+|+|-
T Consensus       410 l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        410 LSVQGGDVREPSWGPF  425 (427)
T ss_pred             eecCCCCCCCCccCCC
Confidence            6667788888899873

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.53  E-value=7.3e-13  Score=139.01  Aligned_cols=260  Identities=10%  Similarity=0.167  Sum_probs=200.2

Q ss_pred             cCCCceEEEEEcCCCC--EEEEEeCCCeEEEEECCCCceeeec------CCCCCCeEEEEEccCCCEEEEEeCCCeEEEE
Q 047260          505 SRNSKVTCCHFSSDGK--LLASSGHDRKVVLWNMDTLQTESTP------EDHKSVVTDVRFRPNSSQLATASVDKSVRLW  576 (784)
Q Consensus       505 ~H~~~V~~l~fspdg~--~Lasgs~Dg~I~IWd~~t~~~~~~l------~~h~~~It~i~fspdg~~Latgs~Dg~I~IW  576 (784)
                      .....|+.++|.-|++  .|..++.|..+..+.+....+...+      ......|..++..  ...|++|-.+|.+.+|
T Consensus        53 ~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~  130 (412)
T KOG3881|consen   53 DELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVR  130 (412)
T ss_pred             chhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEE
Confidence            3456688888887654  4554446777887777765554443      2345566666654  3478888899999999


Q ss_pred             cCCCCcc---eeeeccCCCCCeEEEEEcCCCCcEEEEEeCC--CeEEEEeCCCCeeEEeecC------------CeeEEE
Q 047260          577 DAANPNF---CSQAYTGHSSPIMSLDFHPKKTDLFCFCDND--NEIQYWSINPFLCTHITKG------------GTAQVR  639 (784)
Q Consensus       577 dl~~~~~---~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~d--g~I~iwDl~~~~~~~~~~~------------~v~~v~  639 (784)
                      ..+.+..   ....+.. ...+..+.-++..++++++|+..  ..+.+||++..+.+..-+.            -++.+.
T Consensus       131 ~~k~~d~hss~l~~la~-g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~  209 (412)
T KOG3881|consen  131 HDKSGDLHSSKLIKLAT-GPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIR  209 (412)
T ss_pred             eccCCccccccceeeec-CCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccce
Confidence            9884431   1122222 25577777888888899999998  8999999998765544331            235677


Q ss_pred             EecC--CCEEEEEECCCcEEEEECCCC-eEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEE-eccC
Q 047260          640 FQPR--IGQLLAAASDKVVSIFDIETD-RQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQE-LSSN  714 (784)
Q Consensus       640 fsp~--~~~Ll~~s~Dg~I~IwDl~t~-~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~-l~~~  714 (784)
                      |-+.  ...|++++.-+.|++||.+.+ +++..|.-...+|+++...|++++|+++... .+..||++.++.+.. +.+-
T Consensus       210 Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~  289 (412)
T KOG3881|consen  210 FLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGI  289 (412)
T ss_pred             ecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCc
Confidence            8877  788999999999999999976 6888888888999999999999999998854 999999999988766 7888


Q ss_pred             CCceEEEEEecCCCEEEEEECCCeEEEEECCCCceEEecccCCceEEEEEeCC
Q 047260          715 GNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIAAHENIISALAQSPV  767 (784)
Q Consensus       715 ~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~~~h~~~V~slafspd  767 (784)
                      .+.|.++..+|..+++++++-|..|+|+|+.+.+.+.-..-...+++|-+.++
T Consensus       290 tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~  342 (412)
T KOG3881|consen  290 TGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDD  342 (412)
T ss_pred             cCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccccEEEecCC
Confidence            89999999999999999999999999999999777655555666777777554

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.53  E-value=1.5e-12  Score=147.83  Aligned_cols=220  Identities=18%  Similarity=0.191  Sum_probs=152.3

Q ss_pred             eecCCCceEEEEEcCCCCEEEEEeCC---CeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEE-EEeCCCeEEEEcC
Q 047260          503 IRSRNSKVTCCHFSSDGKLLASSGHD---RKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLA-TASVDKSVRLWDA  578 (784)
Q Consensus       503 l~~H~~~V~~l~fspdg~~Lasgs~D---g~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~La-tgs~Dg~I~IWdl  578 (784)
                      +..+...|.+.+|+|||+.|+..+.+   ..|++||+.+++... +....+.+.+.+|+|||+.|+ +.+.++...||.+
T Consensus       191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~  269 (427)
T PRK02889        191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTV  269 (427)
T ss_pred             eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEE
Confidence            34567789999999999999877643   359999999887643 333445677899999999886 4677887777765


Q ss_pred             CCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeC--CCCeeEEee-c-CCeeEEEEecCCCEEEEEECCC
Q 047260          579 ANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSI--NPFLCTHIT-K-GGTAQVRFQPRIGQLLAAASDK  654 (784)
Q Consensus       579 ~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl--~~~~~~~~~-~-~~v~~v~fsp~~~~Ll~~s~Dg  654 (784)
                      +........+..+...+....|+|++..+++++..++...+|.+  ......... . .......|+|+|++|+..+.++
T Consensus       270 d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~  349 (427)
T PRK02889        270 NADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVG  349 (427)
T ss_pred             ECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccC
Confidence            32221234445555566778999999988877766666666654  443332222 2 2344578999999998877654


Q ss_pred             ---cEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC----eEEEEeCCCCceEEEeccCCCceEEEEEecC
Q 047260          655 ---VVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN----LVKVWSMASGECIQELSSNGNQFHSCVFHPS  726 (784)
Q Consensus       655 ---~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd----~I~IwDl~t~~~i~~l~~~~~~I~sl~fspd  726 (784)
                         .|.+||+.+++... +.. ......+.|+|||+.|+..++.    .+.+.++ ++.....+..+.+.+...+|+|-
T Consensus       350 g~~~I~v~d~~~g~~~~-lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        350 GAFKLYVQDLATGQVTA-LTD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             CcEEEEEEECCCCCeEE-ccC-CCCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCCccCCC
Confidence               69999998876543 322 2334678999999998887632    5677777 46666666666667777788774

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.53  E-value=9.5e-13  Score=153.88  Aligned_cols=249  Identities=16%  Similarity=0.257  Sum_probs=177.4

Q ss_pred             EECCCCceeeecCCCCCCeEEEEEccCC-CEEEEEeCCCeEEEEcCCCCc------ceeeeccCCCCCeEEEEEcCCCCc
Q 047260          534 WNMDTLQTESTPEDHKSVVTDVRFRPNS-SQLATASVDKSVRLWDAANPN------FCSQAYTGHSSPIMSLDFHPKKTD  606 (784)
Q Consensus       534 Wd~~t~~~~~~l~~h~~~It~i~fspdg-~~Latgs~Dg~I~IWdl~~~~------~~~~~~~~h~~~V~sl~~sp~~~~  606 (784)
                      |+.+ |..+..+..|...|..++.++.. .+|++||.||+|++||.+.-.      ....++....+.+.++...+.+. 
T Consensus      1034 W~p~-G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~- 1111 (1431)
T KOG1240|consen 1034 WNPR-GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD- 1111 (1431)
T ss_pred             CCcc-ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC-
Confidence            5554 78888999999999999988854 999999999999999987422      12223333567888998888877 


Q ss_pred             EEEEEeCCCeEEEEeCCCCe-------eEEeec----CCeeEE-EEec-CCC-EEEEEECCCcEEEEECCCCeEEEEEe-
Q 047260          607 LFCFCDNDNEIQYWSINPFL-------CTHITK----GGTAQV-RFQP-RIG-QLLAAASDKVVSIFDIETDRQTHSLQ-  671 (784)
Q Consensus       607 ll~sgs~dg~I~iwDl~~~~-------~~~~~~----~~v~~v-~fsp-~~~-~Ll~~s~Dg~I~IwDl~t~~~i~~l~-  671 (784)
                      .+++++.||.|.+.+++...       +.+..+    +.+.++ +|.. ... .++.+..-+.|..||++.......++ 
T Consensus      1112 ~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~ 1191 (1431)
T KOG1240|consen 1112 QFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKN 1191 (1431)
T ss_pred             eEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhc
Confidence            55666899999999997521       111111    333332 2222 223 56777778999999999876655554 


Q ss_pred             -CCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEec-cCCCceEEEEEecCCC---EEEEEEC--CCeEEEEE
Q 047260          672 -GHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELS-SNGNQFHSCVFHPSYS---TLLVVGG--ISSLELWN  743 (784)
Q Consensus       672 -~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~-~~~~~I~sl~fspdg~---~L~s~s~--dg~I~Iwd  743 (784)
                       ...+.|++++.+|.+.+++.|+.. .+.+||++-+.++..+. .+..+|..+..+|..+   ..++++.  .+.|.+|+
T Consensus      1192 ~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn 1271 (1431)
T KOG1240|consen 1192 QLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWN 1271 (1431)
T ss_pred             CccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeee
Confidence             356789999999999999999855 99999999998888775 3456777777776544   4555544  46899999


Q ss_pred             CCCCceEEe-cc-------------------cCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          744 MAENKSMTI-AA-------------------HENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       744 l~~~~~~~~-~~-------------------h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      +.++.+... ..                   +.-.....++...+.++.+|+.|..|+.||
T Consensus      1272 ~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD 1332 (1431)
T KOG1240|consen 1272 METGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWD 1332 (1431)
T ss_pred             cccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeecc
Confidence            998865421 11                   111222334444566999999999999998

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.53  E-value=3.1e-12  Score=146.14  Aligned_cols=269  Identities=19%  Similarity=0.247  Sum_probs=190.5

Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCC---CEEEEEeCCCeEEEEcCCCCcceee
Q 047260          510 VTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNS---SQLATASVDKSVRLWDAANPNFCSQ  586 (784)
Q Consensus       510 V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg---~~Latgs~Dg~I~IWdl~~~~~~~~  586 (784)
                      -..-.||+|+++++... +..|.||...++.++..+.+|..+++.+.+.|..   .++++++.||.|++||...+. ..+
T Consensus        19 ~~~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~-Llk   96 (792)
T KOG1963|consen   19 KSPAVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGE-LLK   96 (792)
T ss_pred             ecccccccCCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcE-EEE
Confidence            33456899999888665 5679999999999999999999999999999844   478899999999999999876 444


Q ss_pred             eccCCCCCeEEEEEcCC---CCcEEEEEeCCC------------eEEEEeCCCCeeE--EeecC--CeeEEEEecCCCEE
Q 047260          587 AYTGHSSPIMSLDFHPK---KTDLFCFCDNDN------------EIQYWSINPFLCT--HITKG--GTAQVRFQPRIGQL  647 (784)
Q Consensus       587 ~~~~h~~~V~sl~~sp~---~~~ll~sgs~dg------------~I~iwDl~~~~~~--~~~~~--~v~~v~fsp~~~~L  647 (784)
                      ++..+ .++..+.+.|.   ....+..+..+.            .++-+.+.+....  ...+.  ...++.+++.+...
T Consensus        97 t~~~~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~  175 (792)
T KOG1963|consen   97 TFDNN-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFK  175 (792)
T ss_pred             EEecC-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEE
Confidence            44432 33434333221   111111121111            1121222111000  00111  13556677665544


Q ss_pred             EEEECCCcEEEEECCCCeEEEE---E-eCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEeCCC--C--ceEEEeccCCCce
Q 047260          648 LAAASDKVVSIFDIETDRQTHS---L-QGHAELVNYICWDTNGDYLASVS-QNLVKVWSMAS--G--ECIQELSSNGNQF  718 (784)
Q Consensus       648 l~~s~Dg~I~IwDl~t~~~i~~---l-~~h~~~V~sl~~spdg~~Lasgs-dd~I~IwDl~t--~--~~i~~l~~~~~~I  718 (784)
                      . ...+..+.+|+..++.....   . ..|.-.+++.+++|++++++++. ||.|.+|.--.  +  .....+.-|...|
T Consensus       176 ~-i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V  254 (792)
T KOG1963|consen  176 G-IVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEV  254 (792)
T ss_pred             E-EEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEeccccc
Confidence            4 44456788888876541111   1 12566789999999999999998 55999996432  2  2345667788999


Q ss_pred             EEEEEecCCCEEEEEECCCeEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEECCCcEEE
Q 047260          719 HSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKL  782 (784)
Q Consensus       719 ~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs~DG~V~I  782 (784)
                      .+++|+++|.+|++|+.++.+.+|.+.+++...+..-.++|..+.++||+.+.+....|..|.+
T Consensus       255 ~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~l  318 (792)
T KOG1963|consen  255 NSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHL  318 (792)
T ss_pred             ceeEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEE
Confidence            9999999999999999999999999999997788888999999999999999999999998876

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.52  E-value=9.2e-11  Score=129.39  Aligned_cols=259  Identities=14%  Similarity=0.190  Sum_probs=178.7

Q ss_pred             CCCceEEEEEcCCCCEEEEEeC----CCeEEEEECCCC--c--eeeecCCCCCCeEEEEEccCCCEEEEEeC-CCeEEEE
Q 047260          506 RNSKVTCCHFSSDGKLLASSGH----DRKVVLWNMDTL--Q--TESTPEDHKSVVTDVRFRPNSSQLATASV-DKSVRLW  576 (784)
Q Consensus       506 H~~~V~~l~fspdg~~Lasgs~----Dg~I~IWd~~t~--~--~~~~l~~h~~~It~i~fspdg~~Latgs~-Dg~I~IW  576 (784)
                      -......++++|++++|+++..    ++.|..|++...  +  .+............++++|++++|+++.. +|.|.++
T Consensus        35 ~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~  114 (345)
T PF10282_consen   35 EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVF  114 (345)
T ss_dssp             ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEE
Confidence            3445677889999999998876    568999988753  2  33333334456678999999999999875 8999999


Q ss_pred             cCCCCcceeee---c----------cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe--eEE--ee----cCCe
Q 047260          577 DAANPNFCSQA---Y----------TGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFL--CTH--IT----KGGT  635 (784)
Q Consensus       577 dl~~~~~~~~~---~----------~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~--~~~--~~----~~~v  635 (784)
                      ++.....+...   +          ........++.|+|+++.++++.-....|.+|+++...  ...  ..    ....
T Consensus       115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GP  194 (345)
T PF10282_consen  115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGP  194 (345)
T ss_dssp             EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSE
T ss_pred             EccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCC
Confidence            99874322221   1          11235578999999999888877777899999997643  211  11    1456


Q ss_pred             eEEEEecCCCEEEEEEC-CCcEEEEECC--CCe--EEEEEeC------CCCCEEEEEEcCCCCEEEEEeC--CeEEEEeC
Q 047260          636 AQVRFQPRIGQLLAAAS-DKVVSIFDIE--TDR--QTHSLQG------HAELVNYICWDTNGDYLASVSQ--NLVKVWSM  702 (784)
Q Consensus       636 ~~v~fsp~~~~Ll~~s~-Dg~I~IwDl~--t~~--~i~~l~~------h~~~V~sl~~spdg~~Lasgsd--d~I~IwDl  702 (784)
                      ..+.|+|+++++++... ++.|.+|++.  ++.  .+..+..      .......|+++|||++|+++..  +.|.+|++
T Consensus       195 Rh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~  274 (345)
T PF10282_consen  195 RHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDL  274 (345)
T ss_dssp             EEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEE
T ss_pred             cEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEE
Confidence            88999999999988887 7899999988  442  2233321      1125788999999999998874  49999999


Q ss_pred             C--CC--ceEEEeccCCCceEEEEEecCCCEEEEEECC-CeEEEEEC--CCCceEEec--ccCCceEEEEE
Q 047260          703 A--SG--ECIQELSSNGNQFHSCVFHPSYSTLLVVGGI-SSLELWNM--AENKSMTIA--AHENIISALAQ  764 (784)
Q Consensus       703 ~--t~--~~i~~l~~~~~~I~sl~fspdg~~L~s~s~d-g~I~Iwdl--~~~~~~~~~--~h~~~V~slaf  764 (784)
                      .  ++  +.+..+.......+.+.++|++++|+++..+ +.|.+|++  .++......  ..-....||.|
T Consensus       275 d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f  345 (345)
T PF10282_consen  275 DPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF  345 (345)
T ss_dssp             CTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred             ecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence            4  33  3445555555668999999999999998865 68999876  455544322  23345566665

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.51  E-value=1.2e-12  Score=137.82  Aligned_cols=282  Identities=15%  Similarity=0.142  Sum_probs=187.3

Q ss_pred             CCCCcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEE
Q 047260          436 GTGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHF  515 (784)
Q Consensus       436 ~~~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~f  515 (784)
                      .+......+.|.++.+.+ ++|+.++.+.+|...+-.   ..       ..........-.+...+.+++|...|..++|
T Consensus        63 ~H~~aVN~vRf~p~gelL-ASg~D~g~v~lWk~~~~~---~~-------~~d~e~~~~ke~w~v~k~lr~h~~diydL~W  131 (434)
T KOG1009|consen   63 RHTRAVNVVRFSPDGELL-ASGGDGGEVFLWKQGDVR---IF-------DADTEADLNKEKWVVKKVLRGHRDDIYDLAW  131 (434)
T ss_pred             CCcceeEEEEEcCCcCee-eecCCCceEEEEEecCcC---Cc-------cccchhhhCccceEEEEEecccccchhhhhc
Confidence            344556667776666555 578899999999775411   11       0000001112236677888999999999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCC-C
Q 047260          516 SSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSS-P  594 (784)
Q Consensus       516 spdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~-~  594 (784)
                      +||+.++++++.|..+++||+..+.....+.+|...|..++|.|-+.++++-+.|...+++.+.....    ...|.. .
T Consensus       132 s~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~----~~~~~~~~  207 (434)
T KOG1009|consen  132 SPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQV----IKRHGLDI  207 (434)
T ss_pred             cCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeee----eeeeeeeE
Confidence            99999999999999999999999999999999999999999999999999999998777777654331    111110 1


Q ss_pred             eEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCCeeEEEEecCCCEEEEEEC----CCc-----EEEEECCC-C
Q 047260          595 IMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAAS----DKV-----VSIFDIET-D  664 (784)
Q Consensus       595 V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v~~v~fsp~~~~Ll~~s~----Dg~-----I~IwDl~t-~  664 (784)
                      ...-++++.         .....++|.-++.      +.-...++|+|+|..+++...    ++.     .++|+-.. .
T Consensus       208 m~~~~~~~~---------e~~s~rLfhDeTl------ksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~  272 (434)
T KOG1009|consen  208 MPAKAFNER---------EGKSTRLFHDETL------KSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLK  272 (434)
T ss_pred             eeecccCCC---------CcceeeeeecCch------hhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeecccccc
Confidence            111111111         1112233322221      122345667777777766442    222     34454332 2


Q ss_pred             eEEEEEeCCCCCEEEEEEcC------------------CCCEEEEEeCCeEEEEeCCCCceEEEec-cCCCceEEEEEec
Q 047260          665 RQTHSLQGHAELVNYICWDT------------------NGDYLASVSQNLVKVWSMASGECIQELS-SNGNQFHSCVFHP  725 (784)
Q Consensus       665 ~~i~~l~~h~~~V~sl~~sp------------------dg~~Lasgsdd~I~IwDl~t~~~i~~l~-~~~~~I~sl~fsp  725 (784)
                      +++..+.....++..+.|+|                  .+-.++.++.+.|+|||..+-+++.... .|-..|+.++|++
T Consensus       273 rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~  352 (434)
T KOG1009|consen  273 RPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSD  352 (434)
T ss_pred             CceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccccccceEEEeeeeeeeecceeecC
Confidence            34444444444555444443                  3456788889999999999987776654 4778899999999


Q ss_pred             CCCEEEEEECCCeEEEEECCCC
Q 047260          726 SYSTLLVVGGISSLELWNMAEN  747 (784)
Q Consensus       726 dg~~L~s~s~dg~I~Iwdl~~~  747 (784)
                      +|..+++.+.||...+..++..
T Consensus       353 dg~~l~vSS~DGyCS~vtfe~~  374 (434)
T KOG1009|consen  353 DGSVLLVSSTDGFCSLVTFEPW  374 (434)
T ss_pred             CCcEEEEeccCCceEEEEEcch
Confidence            9999999999996665555443

>KOG4594 consensus Sequence-specific single-stranded-DNA-binding protein [Replication, recombination and repair; Transcription; General function prediction only]

Probab=99.51  E-value=1.1e-14  Score=145.68  Aligned_cols=77  Identities=30%  Similarity=0.714  Sum_probs=66.7

Q ss_pred             CcchHHHhHHHHHHHHhhcCChHHHHHHHHHhcCCCCCCCCCCCCCCchHHHHHHHHHhhhcccCC----CCcHHHHHHH
Q 047260            4 GNWEADKMLDVYIHDYFLKRKLHASAKAFMTEGKVATDPVAIDAPGGFLFEWWSVFWDIFISRTND----KHSENAAAYI   79 (784)
Q Consensus         4 ~~~~~~~~l~~yiydy~~k~~~~~~a~~~~~e~~~~~~~~~~~~~~~fl~eww~~fwd~~~a~~~~----~~~~~~~~y~   79 (784)
                      ++-.|++.|..||||||++-+..++|+.|+.|..+.++ +.+-.+.+||.+|||||||+|+|..++    .+|..|+.+.
T Consensus        12 Sd~qArekLa~YvYEYLlhvgaqksaqtflseirwekn-itlge~p~FLhsWWcvFwDLYcAAPeRRd~c~HSsEAKaFh   90 (354)
T KOG4594|consen   12 SDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKN-ITLGEPPGFLHSWWCVFWDLYCAAPERRDTCEHSSEAKAFH   90 (354)
T ss_pred             cchhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhh-hhccCCcchhhhhHHHHHHHhhcCccccCcccccHhhhhhh
Confidence            45679999999999999999999999999999987776 567888999999999999999995544    5777777776


Q ss_pred             HH
Q 047260           80 ET   81 (784)
Q Consensus        80 ~~   81 (784)
                      ++
T Consensus        91 dy   92 (354)
T KOG4594|consen   91 DY   92 (354)
T ss_pred             hh
Confidence            65

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.51  E-value=1.7e-12  Score=133.17  Aligned_cols=220  Identities=18%  Similarity=0.279  Sum_probs=174.2

Q ss_pred             CCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCc--ceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCC
Q 047260          547 DHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPN--FCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINP  624 (784)
Q Consensus       547 ~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~--~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~  624 (784)
                      ....+|+|.+|++|...+|++.....|.||......  ....++..|...|+.|+|.|..+ .|++|+.|..-++|....
T Consensus         8 ~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn-rIvtcs~drnayVw~~~~   86 (361)
T KOG1523|consen    8 RLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN-RIVTCSHDRNAYVWTQPS   86 (361)
T ss_pred             eccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC-ceeEccCCCCccccccCC
Confidence            345789999999999999999999999999987655  35677889999999999999976 678999999999999832


Q ss_pred             ------CeeEEeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEE----EEeCCCCCEEEEEEcCCCCEEEEEeC
Q 047260          625 ------FLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTH----SLQGHAELVNYICWDTNGDYLASVSQ  694 (784)
Q Consensus       625 ------~~~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~----~l~~h~~~V~sl~~spdg~~Lasgsd  694 (784)
                            ...+..+....++|.|+|.++.+++++....|.||-++....-.    .-+.+...|+++.|+|++-+|++|+.
T Consensus        87 ~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~  166 (361)
T KOG1523|consen   87 GGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGST  166 (361)
T ss_pred             CCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccccc
Confidence                  33456677899999999999999999999999999887543321    12346788999999999999999995


Q ss_pred             C-eEEEEeCC-----C-------------CceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCc--eEEec
Q 047260          695 N-LVKVWSMA-----S-------------GECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENK--SMTIA  753 (784)
Q Consensus       695 d-~I~IwDl~-----t-------------~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~--~~~~~  753 (784)
                      | ..+|+..-     .             |..+.++....+.|..+.|+|+|..|+-.+.|+.+.+-|.....  ...+.
T Consensus       167 D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~  246 (361)
T KOG1523|consen  167 DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVA  246 (361)
T ss_pred             CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchh
Confidence            5 88877631     1             23445555667889999999999999999999999999987764  22332


Q ss_pred             ccCCceEEEEEeCC
Q 047260          754 AHENIISALAQSPV  767 (784)
Q Consensus       754 ~h~~~V~slafspd  767 (784)
                      ...-+..++.|-.+
T Consensus       247 ~~~lP~ls~~~ise  260 (361)
T KOG1523|consen  247 TAQLPLLSVSWISE  260 (361)
T ss_pred             hccCCceeeEeecC
Confidence            22255666666543

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.51  E-value=1.2e-13  Score=147.99  Aligned_cols=290  Identities=14%  Similarity=0.179  Sum_probs=222.1

Q ss_pred             cCCCCCCcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEE
Q 047260          433 GSEGTGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTC  512 (784)
Q Consensus       433 g~~~~~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~  512 (784)
                      ...++..+...+.|....+.++ +||.|..|.+|++....                         ..+....+|...|.-
T Consensus       137 kL~~H~GcVntV~FN~~Gd~l~-SgSDD~~vv~WdW~~~~-------------------------~~l~f~SGH~~NvfQ  190 (559)
T KOG1334|consen  137 KLNKHKGCVNTVHFNQRGDVLA-SGSDDLQVVVWDWVSGS-------------------------PKLSFESGHCNNVFQ  190 (559)
T ss_pred             cccCCCCccceeeecccCceee-ccCccceEEeehhhccC-------------------------cccccccccccchhh
Confidence            3455667778888877776665 69999999999875443                         122234568888888


Q ss_pred             EEEcC--CCCEEEEEeCCCeEEEEECCC-Cc--eeeecCCCCCCeEEEEEccCC-CEEEEEeCCCeEEEEcCCCCcce--
Q 047260          513 CHFSS--DGKLLASSGHDRKVVLWNMDT-LQ--TESTPEDHKSVVTDVRFRPNS-SQLATASVDKSVRLWDAANPNFC--  584 (784)
Q Consensus       513 l~fsp--dg~~Lasgs~Dg~I~IWd~~t-~~--~~~~l~~h~~~It~i~fspdg-~~Latgs~Dg~I~IWdl~~~~~~--  584 (784)
                      ..|-|  +..-|++++.||.|++=.+.. +.  ....+..|.+.|..++.-|+. ..|.+++.|+.|.-+|++.....  
T Consensus       191 aKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~  270 (559)
T KOG1334|consen  191 AKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEK  270 (559)
T ss_pred             hhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccce
Confidence            88888  445799999999999987653 22  234566899999999999954 56899999999999999875421  


Q ss_pred             eeeccCCCC---CeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeE------E---------eecCCeeEEEEecCCCE
Q 047260          585 SQAYTGHSS---PIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCT------H---------ITKGGTAQVRFQPRIGQ  646 (784)
Q Consensus       585 ~~~~~~h~~---~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~------~---------~~~~~v~~v~fsp~~~~  646 (784)
                      ......+..   ....|+.+|...+.+++++.|-.+++||.+.....      .         .....|++++|+.++..
T Consensus       271 ~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sE  350 (559)
T KOG1334|consen  271 FVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSE  350 (559)
T ss_pred             eeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccc
Confidence            112222333   56789999999999999999999999998753221      1         12246899999999999


Q ss_pred             EEEEECCCcEEEEECCC--C----------eEEEE-EeCCCC--CEEEEE-EcCCCCEEEEEeCC-eEEEEeCCCCceEE
Q 047260          647 LLAAASDKVVSIFDIET--D----------RQTHS-LQGHAE--LVNYIC-WDTNGDYLASVSQN-LVKVWSMASGECIQ  709 (784)
Q Consensus       647 Ll~~s~Dg~I~IwDl~t--~----------~~i~~-l~~h~~--~V~sl~-~spdg~~Lasgsdd-~I~IwDl~t~~~i~  709 (784)
                      |++...|-.|++|.-..  +          ..++. +++|..  .|..+- |-|...|+++|+|. .|.||+-.+++.|.
T Consensus       351 lLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~  430 (559)
T KOG1334|consen  351 LLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIR  430 (559)
T ss_pred             eeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHH
Confidence            99999999999995432  2          12233 677765  456665 46889999999987 99999999999999


Q ss_pred             EeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCc
Q 047260          710 ELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENK  748 (784)
Q Consensus       710 ~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~  748 (784)
                      .+.+....|+|+.-+|.-+.|++++-|..|+||...+.+
T Consensus       431 ~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~e  469 (559)
T KOG1334|consen  431 FMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTAE  469 (559)
T ss_pred             HhhcccceEeccCCCCCCchhhccCCccceeeecCCccc
Confidence            988887899999999999999999999999999875443

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.50  E-value=4.8e-12  Score=143.61  Aligned_cols=218  Identities=17%  Similarity=0.149  Sum_probs=153.0

Q ss_pred             eecCCCceEEEEEcCCCCEEEEEeC---CCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEE-eCCC--eEEEE
Q 047260          503 IRSRNSKVTCCHFSSDGKLLASSGH---DRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATA-SVDK--SVRLW  576 (784)
Q Consensus       503 l~~H~~~V~~l~fspdg~~Lasgs~---Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latg-s~Dg--~I~IW  576 (784)
                      +..+...+.+.+|||||+.|+..+.   +..|++|++.+++... +....+.+..+.|+|||+.|+.. +.+|  .|.+|
T Consensus       194 lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~  272 (429)
T PRK03629        194 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVM  272 (429)
T ss_pred             eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEE
Confidence            3446678999999999998886542   4579999998876433 22333445678999999988865 4444  58889


Q ss_pred             cCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCe--EEEEeCCCCeeEEee--cCCeeEEEEecCCCEEEEEEC
Q 047260          577 DAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNE--IQYWSINPFLCTHIT--KGGTAQVRFQPRIGQLLAAAS  652 (784)
Q Consensus       577 dl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~--I~iwDl~~~~~~~~~--~~~v~~v~fsp~~~~Ll~~s~  652 (784)
                      |++++. .. .+..+...+....|+|++..++++...++.  |+++|+.+.......  ........|+|+++.|+..+.
T Consensus       273 d~~tg~-~~-~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~  350 (429)
T PRK03629        273 DLASGQ-IR-QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSS  350 (429)
T ss_pred             ECCCCC-EE-EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEc
Confidence            998765 33 333445567889999999977777766654  445566655443322  234456889999999988765


Q ss_pred             C---CcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC----eEEEEeCCCCceEEEeccCCCceEEEEEec
Q 047260          653 D---KVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN----LVKVWSMASGECIQELSSNGNQFHSCVFHP  725 (784)
Q Consensus       653 D---g~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd----~I~IwDl~t~~~i~~l~~~~~~I~sl~fsp  725 (784)
                      +   ..|.+||+.+++.. .+... .......|+|||++|+..+.+    .+.++++ +|.....+..+...+...+|+|
T Consensus       351 ~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        351 NGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQVKFPAWSP  427 (429)
T ss_pred             cCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCCcCCcccCC
Confidence            3   45889999887643 33321 223467899999998887743    4778887 5666677777778888888987


Q ss_pred             C
Q 047260          726 S  726 (784)
Q Consensus       726 d  726 (784)
                      -
T Consensus       428 ~  428 (429)
T PRK03629        428 Y  428 (429)
T ss_pred             C
Confidence            3

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.50  E-value=3.3e-12  Score=145.32  Aligned_cols=219  Identities=17%  Similarity=0.213  Sum_probs=154.6

Q ss_pred             eEeecCCCceEEEEEcCCCCEEEEEeCC---CeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEE-EEeCCC--eEE
Q 047260          501 GCIRSRNSKVTCCHFSSDGKLLASSGHD---RKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLA-TASVDK--SVR  574 (784)
Q Consensus       501 ~~l~~H~~~V~~l~fspdg~~Lasgs~D---g~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~La-tgs~Dg--~I~  574 (784)
                      ..+..|...|.+.+|+|||+.|+.++.+   ..|++||+.+++... +..+.+...+++|+|||+.|+ +.+.+|  .|.
T Consensus       197 ~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy  275 (433)
T PRK04922        197 QTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIY  275 (433)
T ss_pred             eEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEE
Confidence            3345677789999999999999887643   469999998876543 334455566889999999775 445555  599


Q ss_pred             EEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCe--EEEEeCCCCeeEEeec--CCeeEEEEecCCCEEEEE
Q 047260          575 LWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNE--IQYWSINPFLCTHITK--GGTAQVRFQPRIGQLLAA  650 (784)
Q Consensus       575 IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~--I~iwDl~~~~~~~~~~--~~v~~v~fsp~~~~Ll~~  650 (784)
                      +||+.++.  ...+..+......++|+|++..++++...+|.  |+++|+.+........  ......+|+|+++.|+..
T Consensus       276 ~~d~~~g~--~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~  353 (433)
T PRK04922        276 VMDLGSRQ--LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMV  353 (433)
T ss_pred             EEECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEE
Confidence            99998765  23344555556788999999978777766665  6677776654433322  234468999999999887


Q ss_pred             ECCC---cEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeC--C--eEEEEeCCCCceEEEeccCCCceEEEEE
Q 047260          651 ASDK---VVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQ--N--LVKVWSMASGECIQELSSNGNQFHSCVF  723 (784)
Q Consensus       651 s~Dg---~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsd--d--~I~IwDl~t~~~i~~l~~~~~~I~sl~f  723 (784)
                      +.++   .|.+||+.+++.. .+. +........|+|||++|+..++  +  .|.++++. +.....+..+...+...+|
T Consensus       354 ~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l~~~~g~~~~p~w  430 (433)
T PRK04922        354 HGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQRLVSADGEVREPAW  430 (433)
T ss_pred             ECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEcccCCCCCCCCcc
Confidence            6543   6999999887654 333 2234456799999998877663  2  68888885 4455566555566777777


Q ss_pred             ec
Q 047260          724 HP  725 (784)
Q Consensus       724 sp  725 (784)
                      +|
T Consensus       431 sp  432 (433)
T PRK04922        431 SP  432 (433)
T ss_pred             CC
Confidence            76

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.49  E-value=1.5e-13  Score=148.67  Aligned_cols=210  Identities=19%  Similarity=0.315  Sum_probs=158.5

Q ss_pred             eeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCC-CCcEEEEEeCCCeEEE
Q 047260          541 TESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPK-KTDLFCFCDNDNEIQY  619 (784)
Q Consensus       541 ~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~-~~~ll~sgs~dg~I~i  619 (784)
                      ....+.+|.+.|.|+.|+.+|.+|++||.|-.+.|||.-..+....+-.+|...|.++.|-|. ++.++++|..|..|++
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l  121 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL  121 (758)
T ss_pred             hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence            346778999999999999999999999999999999998777677777899999999999995 4568899999999999


Q ss_pred             EeCCCC-------------eeEEeecCCeeEEEEecCC-CEEEEEECCCcEEEEECCCCeEEE----------EEeCCCC
Q 047260          620 WSINPF-------------LCTHITKGGTAQVRFQPRI-GQLLAAASDKVVSIFDIETDRQTH----------SLQGHAE  675 (784)
Q Consensus       620 wDl~~~-------------~~~~~~~~~v~~v~fsp~~-~~Ll~~s~Dg~I~IwDl~t~~~i~----------~l~~h~~  675 (784)
                      ||+...             .+...+...|..++..|.+ ..+++++.||+|+-+|++......          .+...--
T Consensus       122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li  201 (758)
T KOG1310|consen  122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI  201 (758)
T ss_pred             EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence            999842             1222233567778888888 678899999999999998632111          1111223


Q ss_pred             CEEEEEEcCC-CCEEEEEeCC-eEEEEeCCC--------C----------ceEEEecc-CC--------Cc---eEEEEE
Q 047260          676 LVNYICWDTN-GDYLASVSQN-LVKVWSMAS--------G----------ECIQELSS-NG--------NQ---FHSCVF  723 (784)
Q Consensus       676 ~V~sl~~spd-g~~Lasgsdd-~I~IwDl~t--------~----------~~i~~l~~-~~--------~~---I~sl~f  723 (784)
                      ...|+..+|. ..+|++|+.+ ..++||.+.        +          .|+..+.. |-        ..   ++-+.|
T Consensus       202 elk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtf  281 (758)
T KOG1310|consen  202 ELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTF  281 (758)
T ss_pred             eeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEE
Confidence            5678889985 4577888777 999999431        1          12333321 11        11   456689


Q ss_pred             ecCCCEEEEEECCCeEEEEECCCCceE
Q 047260          724 HPSYSTLLVVGGISSLELWNMAENKSM  750 (784)
Q Consensus       724 spdg~~L~s~s~dg~I~Iwdl~~~~~~  750 (784)
                      +|+|.-|++.-....|++||+..++..
T Consensus       282 npNGtElLvs~~gEhVYlfdvn~~~~~  308 (758)
T KOG1310|consen  282 NPNGTELLVSWGGEHVYLFDVNEDKSP  308 (758)
T ss_pred             CCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence            999988888777779999999887654

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.47  E-value=2.9e-11  Score=132.34  Aligned_cols=268  Identities=18%  Similarity=0.265  Sum_probs=185.8

Q ss_pred             ceEEEEEcCCCCEEEEE-----eC-----CCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcC
Q 047260          509 KVTCCHFSSDGKLLASS-----GH-----DRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDA  578 (784)
Q Consensus       509 ~V~~l~fspdg~~Lasg-----s~-----Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl  578 (784)
                      .++++.|+|.|.+|.+=     ..     .-.+.+|+++++.....+......-+++.|+.|..+.+- -..+.|.+|++
T Consensus        75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~ar-lv~nev~f~~~  153 (566)
T KOG2315|consen   75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAAR-LVSNEVQFYDL  153 (566)
T ss_pred             eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhhhh-hhcceEEEEec
Confidence            68999999999998862     11     234789999986555555433323368999987754332 33567999999


Q ss_pred             CCCcceeeeccCCCCCeEEEEEcCCC-CcEEEE-----EeCCCeEEEEeCCC------CeeEEeecCCeeEEEEecCCCE
Q 047260          579 ANPNFCSQAYTGHSSPIMSLDFHPKK-TDLFCF-----CDNDNEIQYWSINP------FLCTHITKGGTAQVRFQPRIGQ  646 (784)
Q Consensus       579 ~~~~~~~~~~~~h~~~V~sl~~sp~~-~~ll~s-----gs~dg~I~iwDl~~------~~~~~~~~~~v~~v~fsp~~~~  646 (784)
                      .+.+.....+  |...|..+.++|.. ...+++     .+.-..|++|.+..      ..+...++..-..+.|++.+.-
T Consensus       154 ~~f~~~~~kl--~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~  231 (566)
T KOG2315|consen  154 GSFKTIQHKL--SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTA  231 (566)
T ss_pred             CCccceeeee--eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCce
Confidence            8755333333  56789999999983 334443     23456899998762      1222334455667788888765


Q ss_pred             EEEE-EC--CC---------cEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC---eEEEEeCCCCceEEEe
Q 047260          647 LLAA-AS--DK---------VVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN---LVKVWSMASGECIQEL  711 (784)
Q Consensus       647 Ll~~-s~--Dg---------~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd---~I~IwDl~t~~~i~~l  711 (784)
                      |++- +.  |.         +++++++....+...+. ..++|.+++|+++++-++++..=   .+.|||++ +.++..+
T Consensus       232 LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df  309 (566)
T KOG2315|consen  232 LLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF  309 (566)
T ss_pred             EEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC
Confidence            4432 22  33         58888888444444443 68899999999999887776532   89999986 3444444


Q ss_pred             ccCCCceEEEEEecCCCEEEEEECC---CeEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEEC------CCcEEE
Q 047260          712 SSNGNQFHSCVFHPSYSTLLVVGGI---SSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASH------DSSVKL  782 (784)
Q Consensus       712 ~~~~~~I~sl~fspdg~~L~s~s~d---g~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs~------DG~V~I  782 (784)
                        ..++-+++.|+|.|++|+.+|-+   |.|.|||+.+.+++....-.+ -+-+.|+|||.+|+|+..      |+.++|
T Consensus       310 --~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~-tt~~eW~PdGe~flTATTaPRlrvdNg~Ki  386 (566)
T KOG2315|consen  310 --PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN-TTVFEWSPDGEYFLTATTAPRLRVDNGIKI  386 (566)
T ss_pred             --CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC-ceEEEEcCCCcEEEEEeccccEEecCCeEE
Confidence              45667899999999999888876   799999999977774333222 345789999999998863      678899


Q ss_pred             eC
Q 047260          783 WK  784 (784)
Q Consensus       783 Wd  784 (784)
                      |+
T Consensus       387 wh  388 (566)
T KOG2315|consen  387 WH  388 (566)
T ss_pred             EE
Confidence            85

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.45  E-value=2.9e-11  Score=136.74  Aligned_cols=230  Identities=15%  Similarity=0.158  Sum_probs=159.7

Q ss_pred             CeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCC---CeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCC
Q 047260          529 RKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVD---KSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKT  605 (784)
Q Consensus       529 g~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~D---g~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~  605 (784)
                      ..|.++|..... ...+..+...+...+|+|++++|+.++.+   ..|++||+.++..  ..+..+...+.+++|+|++.
T Consensus       170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~--~~~~~~~~~~~~~~~spDg~  246 (417)
T TIGR02800       170 YELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR--EKVASFPGMNGAPAFSPDGS  246 (417)
T ss_pred             ceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE--EEeecCCCCccceEECCCCC
Confidence            458888886443 44555677789999999999999988754   4799999987652  22334556677899999999


Q ss_pred             cEEEEEeCCC--eEEEEeCCCCeeEEeec--CCeeEEEEecCCCEEEEEECC-C--cEEEEECCCCeEEEEEeCCCCCEE
Q 047260          606 DLFCFCDNDN--EIQYWSINPFLCTHITK--GGTAQVRFQPRIGQLLAAASD-K--VVSIFDIETDRQTHSLQGHAELVN  678 (784)
Q Consensus       606 ~ll~sgs~dg--~I~iwDl~~~~~~~~~~--~~v~~v~fsp~~~~Ll~~s~D-g--~I~IwDl~t~~~i~~l~~h~~~V~  678 (784)
                      .++++.+.++  .|++||+.+........  .......|+|++..|+.++.. +  .|+++|+.+++.. .+..+...+.
T Consensus       247 ~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~  325 (417)
T TIGR02800       247 KLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNA  325 (417)
T ss_pred             EEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCcc
Confidence            8887776554  58889988765443332  334467899999998877653 3  6888888876643 3444556677


Q ss_pred             EEEEcCCCCEEEEEeCC----eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCC---eEEEEECCCCceEE
Q 047260          679 YICWDTNGDYLASVSQN----LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGIS---SLELWNMAENKSMT  751 (784)
Q Consensus       679 sl~~spdg~~Lasgsdd----~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg---~I~Iwdl~~~~~~~  751 (784)
                      .+.|+|+|++|+.++.+    .|.+||+.++... .+... .......|+|++++|+..+.++   .+++.+........
T Consensus       326 ~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~~~~  403 (417)
T TIGR02800       326 SPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRFRAR  403 (417)
T ss_pred             CeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCceeeE
Confidence            88999999998887643    7999999886542 33222 2345568999999988887764   46666765544444


Q ss_pred             ecccCCceEEEEE
Q 047260          752 IAAHENIISALAQ  764 (784)
Q Consensus       752 ~~~h~~~V~slaf  764 (784)
                      +..+.+.+..++|
T Consensus       404 ~~~~~g~~~~~~w  416 (417)
T TIGR02800       404 LPLGNGDVREPAW  416 (417)
T ss_pred             CCCCCCCcCCCCC
Confidence            4444555555554

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.45  E-value=2.5e-11  Score=124.64  Aligned_cols=227  Identities=12%  Similarity=0.204  Sum_probs=162.3

Q ss_pred             CeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcce-eeeccCCCCCeEEEEEcCCCCcEEEEEeCC------CeEEEEeCC
Q 047260          551 VVTDVRFRPNSSQLATASVDKSVRLWDAANPNFC-SQAYTGHSSPIMSLDFHPKKTDLFCFCDND------NEIQYWSIN  623 (784)
Q Consensus       551 ~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~-~~~~~~h~~~V~sl~~sp~~~~ll~sgs~d------g~I~iwDl~  623 (784)
                      ....++|+.|...+++|.++| .+||+.+.-+.. .+.+....-.+..+-|-  .+.+.++|+.+      ..|.|||-.
T Consensus         7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkviIWDD~   83 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVIIWDDL   83 (346)
T ss_pred             ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhh--hceEEEecCCCCCCCCCceEEEEecc
Confidence            345699999999888887766 899998753311 11111111222233332  23345555443      579999976


Q ss_pred             CCeeEEe--ecCCeeEEEEecCCCEEEEEECCCcEEEEECC-CCeEEEEEeCCC--CCEEEEEEcCCCCEEEEEe--CCe
Q 047260          624 PFLCTHI--TKGGTAQVRFQPRIGQLLAAASDKVVSIFDIE-TDRQTHSLQGHA--ELVNYICWDTNGDYLASVS--QNL  696 (784)
Q Consensus       624 ~~~~~~~--~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~-t~~~i~~l~~h~--~~V~sl~~spdg~~Lasgs--dd~  696 (784)
                      ..+++..  +..+|..|.+.++   .++.-.++.|+||... +.+.++.+....  ..+.+++-..+..+||.-+  -|.
T Consensus        84 k~~~i~el~f~~~I~~V~l~r~---riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gq  160 (346)
T KOG2111|consen   84 KERCIIELSFNSEIKAVKLRRD---RIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQ  160 (346)
T ss_pred             cCcEEEEEEeccceeeEEEcCC---eEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccce
Confidence            6666654  4588999999876   4444556899999987 456777665432  3344444334455666655  349


Q ss_pred             EEEEeCCCCce--EEEeccCCCceEEEEEecCCCEEEEEECCCe-EEEEECCCCceE-Eec--ccCCceEEEEEeCCCCE
Q 047260          697 VKVWSMASGEC--IQELSSNGNQFHSCVFHPSYSTLLVVGGISS-LELWNMAENKSM-TIA--AHENIISALAQSPVTGM  770 (784)
Q Consensus       697 I~IwDl~t~~~--i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~-I~Iwdl~~~~~~-~~~--~h~~~V~slafspdg~~  770 (784)
                      |.|-|+...+.  ...+..|.+.|.|++.+-+|..+++++..|+ |+|||..+++.+ ++.  .....|.+++|+|+..+
T Consensus       161 vQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~  240 (346)
T KOG2111|consen  161 VQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSW  240 (346)
T ss_pred             EEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccE
Confidence            99999987655  4788899999999999999999999999996 899999999887 443  23457999999999999


Q ss_pred             EEEEECCCcEEEe
Q 047260          771 VASASHDSSVKLW  783 (784)
Q Consensus       771 LaSgs~DG~V~IW  783 (784)
                      |+++|+.|+|.||
T Consensus       241 LavsSdKgTlHiF  253 (346)
T KOG2111|consen  241 LAVSSDKGTLHIF  253 (346)
T ss_pred             EEEEcCCCeEEEE
Confidence            9999999999997

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.45  E-value=2.5e-11  Score=138.22  Aligned_cols=219  Identities=14%  Similarity=0.174  Sum_probs=154.4

Q ss_pred             eEeecCCCceEEEEEcCCCCEEEEEeC---CCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEE-EEeCCCe--EE
Q 047260          501 GCIRSRNSKVTCCHFSSDGKLLASSGH---DRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLA-TASVDKS--VR  574 (784)
Q Consensus       501 ~~l~~H~~~V~~l~fspdg~~Lasgs~---Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~La-tgs~Dg~--I~  574 (784)
                      ..+..|...|.+.+|+|||+.|+..+.   +..|++||+.+++.. .+..+.+.+.+.+|+|||+.|+ +.+.++.  |.
T Consensus       195 ~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy  273 (435)
T PRK05137        195 RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIY  273 (435)
T ss_pred             EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEE
Confidence            345568889999999999999887763   468999999887653 4445667788999999998875 4555555  77


Q ss_pred             EEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCC--eEEEEeCCCCeeEEee--cCCeeEEEEecCCCEEEEE
Q 047260          575 LWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDN--EIQYWSINPFLCTHIT--KGGTAQVRFQPRIGQLLAA  650 (784)
Q Consensus       575 IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg--~I~iwDl~~~~~~~~~--~~~v~~v~fsp~~~~Ll~~  650 (784)
                      +||+.++.  ...+..+........|+|++..++++...+|  .|+++|+.........  .+.+....|+|+++.|+..
T Consensus       274 ~~d~~~~~--~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~  351 (435)
T PRK05137        274 TMDLRSGT--TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFT  351 (435)
T ss_pred             EEECCCCc--eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEE
Confidence            77887755  3445556666778999999997777765554  6888888765544433  3456678899999999887


Q ss_pred             ECC---CcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeC-------CeEEEEeCCCCceEEEeccCCCceEE
Q 047260          651 ASD---KVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQ-------NLVKVWSMASGECIQELSSNGNQFHS  720 (784)
Q Consensus       651 s~D---g~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsd-------d~I~IwDl~t~~~i~~l~~~~~~I~s  720 (784)
                      ..+   ..|.+||+..+.. ..+. ....+..+.|+|||+.|+..++       ..|.++|+..+.. ..+.. ...+..
T Consensus       352 ~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~-~~~~~~  427 (435)
T PRK05137        352 KQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPT-PGDASD  427 (435)
T ss_pred             EcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEccC-CCCccC
Confidence            653   3688889865543 3333 2235678899999998876542       2577788766544 44443 344666


Q ss_pred             EEEecC
Q 047260          721 CVFHPS  726 (784)
Q Consensus       721 l~fspd  726 (784)
                      .+|+|-
T Consensus       428 p~Wsp~  433 (435)
T PRK05137        428 PAWSPL  433 (435)
T ss_pred             cccCCC
Confidence            677763

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.44  E-value=3.8e-10  Score=124.54  Aligned_cols=263  Identities=14%  Similarity=0.165  Sum_probs=178.1

Q ss_pred             EEEEeCC----CeEEEEEC--CCCceeeec-CCCCCCeEEEEEccCCCEEEEEeC----CCeEEEEcCCCC--cc-eeee
Q 047260          522 LASSGHD----RKVVLWNM--DTLQTESTP-EDHKSVVTDVRFRPNSSQLATASV----DKSVRLWDAANP--NF-CSQA  587 (784)
Q Consensus       522 Lasgs~D----g~I~IWd~--~t~~~~~~l-~~h~~~It~i~fspdg~~Latgs~----Dg~I~IWdl~~~--~~-~~~~  587 (784)
                      +++|+..    +.|.+|++  ++++....- .........++++|++++|+++..    ++.|..|++...  .. .+..
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~   81 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS   81 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence            4555555    67888888  344432211 123455677999999999999877    478999998764  21 1122


Q ss_pred             ccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCC-CeeEEe---e-------------cCCeeEEEEecCCCEEEEE
Q 047260          588 YTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINP-FLCTHI---T-------------KGGTAQVRFQPRIGQLLAA  650 (784)
Q Consensus       588 ~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~-~~~~~~---~-------------~~~v~~v~fsp~~~~Ll~~  650 (784)
                      ..........++++|++..++++...+|.|.++++.. +.....   .             ..+..++.++|+++++++.
T Consensus        82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~  161 (345)
T PF10282_consen   82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP  161 (345)
T ss_dssp             EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE
T ss_pred             eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE
Confidence            2223455678999999998888888899999999986 222211   1             1456789999999999988


Q ss_pred             EC-CCcEEEEECCCCe--E--EEEEe-CCCCCEEEEEEcCCCCEEEEEeCC--eEEEEeCC--CCc--eEEEeccC----
Q 047260          651 AS-DKVVSIFDIETDR--Q--THSLQ-GHAELVNYICWDTNGDYLASVSQN--LVKVWSMA--SGE--CIQELSSN----  714 (784)
Q Consensus       651 s~-Dg~I~IwDl~t~~--~--i~~l~-~h~~~V~sl~~spdg~~Lasgsdd--~I~IwDl~--t~~--~i~~l~~~----  714 (784)
                      .. ...|.+|++....  .  ...+. .....-+.++|+|+++++++..+.  .|.+|++.  ++.  .+..+...    
T Consensus       162 dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~  241 (345)
T PF10282_consen  162 DLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGF  241 (345)
T ss_dssp             ETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTS
T ss_pred             ecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccc
Confidence            76 5789999997654  3  22232 244567899999999999888743  89999888  442  23333211    


Q ss_pred             --CCceEEEEEecCCCEEEEEECC-CeEEEEECCC--CceE---EecccCCceEEEEEeCCCCEEEEEE-CCCcEEEeC
Q 047260          715 --GNQFHSCVFHPSYSTLLVVGGI-SSLELWNMAE--NKSM---TIAAHENIISALAQSPVTGMVASAS-HDSSVKLWK  784 (784)
Q Consensus       715 --~~~I~sl~fspdg~~L~s~s~d-g~I~Iwdl~~--~~~~---~~~~h~~~V~slafspdg~~LaSgs-~DG~V~IWd  784 (784)
                        ......++++|++++|+++... +.|.+|+++.  ++..   .+.......+.++++|+|++|++++ .++.|.+|+
T Consensus       242 ~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~  320 (345)
T PF10282_consen  242 TGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFD  320 (345)
T ss_dssp             CSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred             cccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEE
Confidence              1257889999999998887754 6899999943  3433   2222344589999999999999887 467888874

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.43  E-value=9.6e-11  Score=129.77  Aligned_cols=261  Identities=11%  Similarity=0.129  Sum_probs=170.9

Q ss_pred             CEE-EEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEE
Q 047260          520 KLL-ASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSL  598 (784)
Q Consensus       520 ~~L-asgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl  598 (784)
                      +++ ++-..++.|.|.|..+.+.+.++......-..+.|+||++++++++.||.|.++|+.+.+ ....+.. .....++
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~-~v~~i~~-G~~~~~i   83 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGK-VVATIKV-GGNPRGI   83 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSS-EEEEEE--SSEEEEE
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCccc-EEEEEec-CCCcceE
Confidence            344 455678999999999999999997655444557899999999999999999999999988 4444433 3457889


Q ss_pred             EEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec----------CCeeEEEEecCCCEEEEEECC-CcEEEEECCCCeEE
Q 047260          599 DFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK----------GGTAQVRFQPRIGQLLAAASD-KVVSIFDIETDRQT  667 (784)
Q Consensus       599 ~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~----------~~v~~v~fsp~~~~Ll~~s~D-g~I~IwDl~t~~~i  667 (784)
                      +++++|+++++++...+.+.++|.++.+.+....          ..+..+..++....+++.-.| +.|.+.|....+.+
T Consensus        84 ~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~  163 (369)
T PF02239_consen   84 AVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNL  163 (369)
T ss_dssp             EE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCE
T ss_pred             EEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccc
Confidence            9999999999999999999999999988776654          245567778888877776665 88999998765433


Q ss_pred             E-EEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEeCCCCceEEEecc----CCCceEEEEEecCC----------CEE
Q 047260          668 H-SLQGHAELVNYICWDTNGDYLASVS--QNLVKVWSMASGECIQELSS----NGNQFHSCVFHPSY----------STL  730 (784)
Q Consensus       668 ~-~l~~h~~~V~sl~~spdg~~Lasgs--dd~I~IwDl~t~~~i~~l~~----~~~~I~sl~fspdg----------~~L  730 (784)
                      . .............|+|+++|++++.  ++.|.++|..+++.+..+..    |..++..+ .+|..          ...
T Consensus       164 ~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~  242 (369)
T PF02239_consen  164 KVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFA  242 (369)
T ss_dssp             EEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSE
T ss_pred             ceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeecccccee
Confidence            2 2233455677899999999988876  45999999999988776643    22222222 23332          222


Q ss_pred             EEEECCCeEEEEECCCCceEE-ecccCCceEEEEEeCCCCEEEEE----ECCCcEEEeC
Q 047260          731 LVVGGISSLELWNMAENKSMT-IAAHENIISALAQSPVTGMVASA----SHDSSVKLWK  784 (784)
Q Consensus       731 ~s~s~dg~I~Iwdl~~~~~~~-~~~h~~~V~slafspdg~~LaSg----s~DG~V~IWd  784 (784)
                      ++.-..+.+.+||....+.+. +...... ..+..+|++++|.+.    ..++.|.|+|
T Consensus       243 ~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD  300 (369)
T PF02239_consen  243 IPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVID  300 (369)
T ss_dssp             EEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEE
T ss_pred             cccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEE
Confidence            222233356678888888774 4444444 778889999999988    3447787775

...

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.43  E-value=6.3e-11  Score=134.70  Aligned_cols=232  Identities=12%  Similarity=0.107  Sum_probs=161.4

Q ss_pred             eEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCC---CeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCc
Q 047260          530 KVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVD---KSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTD  606 (784)
Q Consensus       530 ~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~D---g~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~  606 (784)
                      .|.++|.+.... ..+..+...+....|+|||+.|+..+.+   ..|.+||+.++..  ..+....+.+....|+|++..
T Consensus       180 ~l~~~d~~g~~~-~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~--~~l~~~~g~~~~~~~SpDG~~  256 (430)
T PRK00178        180 TLQRSDYDGARA-VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR--EQITNFEGLNGAPAWSPDGSK  256 (430)
T ss_pred             EEEEECCCCCCc-eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE--EEccCCCCCcCCeEECCCCCE
Confidence            477888875443 4455677889999999999999887654   3689999987652  223333445567899999998


Q ss_pred             EEEEEeCCC--eEEEEeCCCCeeEEeec--CCeeEEEEecCCCEEEEEEC-C--CcEEEEECCCCeEEEEEeCCCCCEEE
Q 047260          607 LFCFCDNDN--EIQYWSINPFLCTHITK--GGTAQVRFQPRIGQLLAAAS-D--KVVSIFDIETDRQTHSLQGHAELVNY  679 (784)
Q Consensus       607 ll~sgs~dg--~I~iwDl~~~~~~~~~~--~~v~~v~fsp~~~~Ll~~s~-D--g~I~IwDl~t~~~i~~l~~h~~~V~s  679 (784)
                      ++++.+.++  .|++||+.+........  .......|+|+++.++..+. +  ..|+++|+.+++...... .......
T Consensus       257 la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-~~~~~~~  335 (430)
T PRK00178        257 LAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-VGNYNAR  335 (430)
T ss_pred             EEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCCccc
Confidence            887776665  68888998765544332  33556789999998887765 3  358888888776433221 2233445


Q ss_pred             EEEcCCCCEEEEEeC--C--eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECC---CeEEEEECCCCceEEe
Q 047260          680 ICWDTNGDYLASVSQ--N--LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGI---SSLELWNMAENKSMTI  752 (784)
Q Consensus       680 l~~spdg~~Lasgsd--d--~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~d---g~I~Iwdl~~~~~~~~  752 (784)
                      ..|+|+|++|+..+.  +  .|.+||+.+++.. .+... .......|+|+|+.|+..+.+   ..|.++++.......+
T Consensus       336 ~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~~-~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~~~l  413 (430)
T PRK00178        336 PRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILTDT-SLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVRLPL  413 (430)
T ss_pred             eEECCCCCEEEEEEccCCceEEEEEECCCCCEE-EccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEEC
Confidence            789999999887763  2  6899999887643 33222 222356899999998887765   3588888876655556


Q ss_pred             cccCCceEEEEEeCC
Q 047260          753 AAHENIISALAQSPV  767 (784)
Q Consensus       753 ~~h~~~V~slafspd  767 (784)
                      ..+.+.+...+|+|-
T Consensus       414 ~~~~g~~~~p~ws~~  428 (430)
T PRK00178        414 PTAQGEVREPSWSPY  428 (430)
T ss_pred             cCCCCCcCCCccCCC
Confidence            556677788888863

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.42  E-value=3e-13  Score=144.25  Aligned_cols=229  Identities=14%  Similarity=0.166  Sum_probs=184.2

Q ss_pred             CCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeE
Q 047260          549 KSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCT  628 (784)
Q Consensus       549 ~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~  628 (784)
                      ...-..+.++.+|+.|+.|+..|.|..+|..+... ...+. -...|.++.|..+.. +|++ .....++|||-... .+
T Consensus       129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L-~~Ei~-v~Etv~Dv~~LHneq-~~AV-AQK~y~yvYD~~Gt-El  203 (545)
T KOG1272|consen  129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKL-HFEIN-VMETVRDVTFLHNEQ-FFAV-AQKKYVYVYDNNGT-EL  203 (545)
T ss_pred             ccCCeeeeecCCccEEEecCCccceeeeeccccee-eeeee-hhhhhhhhhhhcchH-HHHh-hhhceEEEecCCCc-EE
Confidence            34456789999999999999999999999998763 32222 346688999987765 4433 44788999997743 34


Q ss_pred             Eeec--CCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeC-CeEEEEeCCCC
Q 047260          629 HITK--GGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQ-NLVKVWSMASG  705 (784)
Q Consensus       629 ~~~~--~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsd-d~I~IwDl~t~  705 (784)
                      +.++  ..+..+.|-|..-.|++++..|.++.-|+.+|+.+..+....+.+..++-+|-+..+-.|.. |+|.+|.....
T Consensus       204 HClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk  283 (545)
T KOG1272|consen  204 HCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK  283 (545)
T ss_pred             eehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCc
Confidence            4443  67788999998777788888999999999999999999888899999999998888888775 49999999999


Q ss_pred             ceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          706 ECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       706 ~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      +++..+..|.++|.++++.++|.|+++++.|..++|||++....+.......+...+++|..|  ++.++....|.||.
T Consensus       284 ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg--lLA~~~G~~v~iw~  360 (545)
T KOG1272|consen  284 EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG--LLALSYGDHVQIWK  360 (545)
T ss_pred             chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCcccccccccc--ceeeecCCeeeeeh
Confidence            999999999999999999999999999999999999999987755222225567788888655  33444555788884

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.42  E-value=1.3e-11  Score=134.78  Aligned_cols=235  Identities=14%  Similarity=0.220  Sum_probs=173.2

Q ss_pred             CCCCCeEEEEEccCCCEE-EEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC
Q 047260          547 DHKSVVTDVRFRPNSSQL-ATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPF  625 (784)
Q Consensus       547 ~h~~~It~i~fspdg~~L-atgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~  625 (784)
                      .|....+.|..+|||.|+ ++|.+.-.|++||+.+-.  ++.-......|..+....+.-.-++.-..|..|-+..--..
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLS--LKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~  126 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLS--LKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGR  126 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccce--eeeeecccccceeEEEeccchhhheEeecCceeeehhhcCe
Confidence            578889999999999986 566778899999998643  22222223444444333332222333334666655443333


Q ss_pred             eeEEeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEeCCC
Q 047260          626 LCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVS-QNLVKVWSMAS  704 (784)
Q Consensus       626 ~~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgs-dd~I~IwDl~t  704 (784)
                      .....+......++++.-..-|++++....|+-++++.|..+..|....+.+++|..++...+|++|+ ++.|..||.++
T Consensus       127 hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~  206 (703)
T KOG2321|consen  127 HYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRD  206 (703)
T ss_pred             eeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchh
Confidence            33333444556677776666688888889999999999999999988889999999999999999999 55999999998


Q ss_pred             CceEEEeccC------C-----CceEEEEEecCCCEEEEEECCCeEEEEECCCCceEEecccC--CceEEEEEeCC--CC
Q 047260          705 GECIQELSSN------G-----NQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIAAHE--NIISALAQSPV--TG  769 (784)
Q Consensus       705 ~~~i~~l~~~------~-----~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~~~h~--~~V~slafspd--g~  769 (784)
                      ...+.++...      .     ..|+++.|+.+|-.+++|+.+|.|.|||++..+.+....|.  -+|..+.|.+.  .+
T Consensus       207 ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~  286 (703)
T KOG2321|consen  207 KSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQN  286 (703)
T ss_pred             hhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCc
Confidence            8766665432      1     24899999999999999999999999999999999777775  47889999765  34


Q ss_pred             EEEEEECCCcEEEeC
Q 047260          770 MVASASHDSSVKLWK  784 (784)
Q Consensus       770 ~LaSgs~DG~V~IWd  784 (784)
                      .|+|+ +...++|||
T Consensus       287 ~v~S~-Dk~~~kiWd  300 (703)
T KOG2321|consen  287 KVVSM-DKRILKIWD  300 (703)
T ss_pred             eEEec-chHHhhhcc
Confidence            66665 456789997

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.42  E-value=6.5e-12  Score=125.72  Aligned_cols=272  Identities=14%  Similarity=0.170  Sum_probs=183.7

Q ss_pred             cccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEee-cCCCceEEEEEcCC
Q 047260          440 LASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIR-SRNSKVTCCHFSSD  518 (784)
Q Consensus       440 ~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~-~H~~~V~~l~fspd  518 (784)
                      ...+.-|.. .++++ .|...|.|.+|......+                          .-.++ .|...|+.+..-|+
T Consensus        16 ~v~s~~fqa-~~rL~-sg~~~G~V~~w~lqt~r~--------------------------~~~~r~~g~~~it~lq~~p~   67 (323)
T KOG0322|consen   16 SVTSVLFQA-NERLM-SGLSVGIVKMWVLQTERD--------------------------LPLIRLFGRLFITNLQSIPN   67 (323)
T ss_pred             hheehhhcc-chhhh-cccccceEEEEEeecCcc--------------------------chhhhhhccceeeceeecCC
Confidence            334444433 34444 688889999997744331                          11223 36777888888887


Q ss_pred             CCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccC-----CC----EEEEEeCCC-eEEEEcCCCCcceeee-
Q 047260          519 GKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPN-----SS----QLATASVDK-SVRLWDAANPNFCSQA-  587 (784)
Q Consensus       519 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspd-----g~----~Latgs~Dg-~I~IWdl~~~~~~~~~-  587 (784)
                       ..|.+-+.|+.+.+|++.-...+.   .|.-.++++.|.+-     ++    .++.-+... .+.+-|..... .+.. 
T Consensus        68 -d~l~tqgRd~~L~lw~ia~s~~i~---i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~t-qv~i~  142 (323)
T KOG0322|consen   68 -DSLDTQGRDPLLILWTIAYSAFIS---IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTT-QVQIA  142 (323)
T ss_pred             -cchhhcCCCceEEEEEccCcceEE---EeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccc-eeEcc
Confidence             468888999999999998644332   24445555555541     11    111111100 01222221111 0111 


Q ss_pred             ---ccCCCCCeEEEEEcCC--CCcEEEEEeCCCeEEEEeCCCCeeE-------------EeecCCeeEEEEecCCCEEEE
Q 047260          588 ---YTGHSSPIMSLDFHPK--KTDLFCFCDNDNEIQYWSINPFLCT-------------HITKGGTAQVRFQPRIGQLLA  649 (784)
Q Consensus       588 ---~~~h~~~V~sl~~sp~--~~~ll~sgs~dg~I~iwDl~~~~~~-------------~~~~~~v~~v~fsp~~~~Ll~  649 (784)
                         -.+..+.++|..+.-+  ...++++|.++|.|.+||+.+...+             ..++.++.++.|.+....=+.
T Consensus       143 dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGis  222 (323)
T KOG0322|consen  143 DDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGIS  222 (323)
T ss_pred             CchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcC
Confidence               1133456777775332  3456778889999999999875322             234578888999887777788


Q ss_pred             EECCCcEEEEECCCC--e--EEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEeCCCCceEEEeccCCCceEEEEEe
Q 047260          650 AASDKVVSIFDIETD--R--QTHSLQGHAELVNYICWDTNGDYLASVS-QNLVKVWSMASGECIQELSSNGNQFHSCVFH  724 (784)
Q Consensus       650 ~s~Dg~I~IwDl~t~--~--~i~~l~~h~~~V~sl~~spdg~~Lasgs-dd~I~IwDl~t~~~i~~l~~~~~~I~sl~fs  724 (784)
                      ++.+..+..|.+...  .  ....+.-.+..|..+.+-||++++++++ |+.|+||..++..++..++-|...|++++|+
T Consensus       223 gga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfs  302 (323)
T KOG0322|consen  223 GGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFS  302 (323)
T ss_pred             CCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeC
Confidence            888888999987643  1  2222333455688899999999999999 5599999999999999999999999999999


Q ss_pred             cCCCEEEEEECCCeEEEEEC
Q 047260          725 PSYSTLLVVGGISSLELWNM  744 (784)
Q Consensus       725 pdg~~L~s~s~dg~I~Iwdl  744 (784)
                      |+.+.+++++.|++|.+|++
T Consensus       303 pd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  303 PDCELMAAASKDARISLWKL  322 (323)
T ss_pred             CCCchhhhccCCceEEeeec
Confidence            99999999999999999986

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.41  E-value=7.5e-11  Score=134.53  Aligned_cols=231  Identities=13%  Similarity=0.108  Sum_probs=157.4

Q ss_pred             eEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCC-C--eEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCc
Q 047260          530 KVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVD-K--SVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTD  606 (784)
Q Consensus       530 ~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~D-g--~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~  606 (784)
                      .|.++|.+.... ..+..+...+.+..|+|||+.|+..+.+ +  .|.+||+.+++..  .+...........|+|++..
T Consensus       199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~--~lt~~~g~~~~~~wSPDG~~  275 (448)
T PRK04792        199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE--KVTSFPGINGAPRFSPDGKK  275 (448)
T ss_pred             EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE--EecCCCCCcCCeeECCCCCE
Confidence            577778765433 4555677889999999999998877653 2  5888899876521  12222333457899999998


Q ss_pred             EEEEEeCCCe--EEEEeCCCCeeEEeec--CCeeEEEEecCCCEEEEEEC-C--CcEEEEECCCCeEEEEEeCCCCCEEE
Q 047260          607 LFCFCDNDNE--IQYWSINPFLCTHITK--GGTAQVRFQPRIGQLLAAAS-D--KVVSIFDIETDRQTHSLQGHAELVNY  679 (784)
Q Consensus       607 ll~sgs~dg~--I~iwDl~~~~~~~~~~--~~v~~v~fsp~~~~Ll~~s~-D--g~I~IwDl~t~~~i~~l~~h~~~V~s  679 (784)
                      ++++.+.++.  |+++|+.+........  .......|+|+++.|+..+. +  ..|+++|+.+++.... .........
T Consensus       276 La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L-t~~g~~~~~  354 (448)
T PRK04792        276 LALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL-TFEGEQNLG  354 (448)
T ss_pred             EEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE-ecCCCCCcC
Confidence            8887777775  7788887765544333  34567889999998887765 3  3577778877764432 212223345


Q ss_pred             EEEcCCCCEEEEEeC--C--eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCC---eEEEEECCCCceEEe
Q 047260          680 ICWDTNGDYLASVSQ--N--LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGIS---SLELWNMAENKSMTI  752 (784)
Q Consensus       680 l~~spdg~~Lasgsd--d--~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg---~I~Iwdl~~~~~~~~  752 (784)
                      .+|+|||++|+..+.  +  .|.++|+.+++.. .+... .......|+|+++.|+..+.++   .|++++........+
T Consensus       355 ~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l  432 (448)
T PRK04792        355 GSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKARL  432 (448)
T ss_pred             eeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEEC
Confidence            789999999887653  2  6777888887643 33322 1223458999999988776653   478888865555566


Q ss_pred             cccCCceEEEEEeC
Q 047260          753 AAHENIISALAQSP  766 (784)
Q Consensus       753 ~~h~~~V~slafsp  766 (784)
                      ..+.+.+...+|+|
T Consensus       433 ~~~~g~~~~p~Wsp  446 (448)
T PRK04792        433 PAGQGEVKSPAWSP  446 (448)
T ss_pred             cCCCCCcCCCccCC
Confidence            66677788888887

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.39  E-value=4.6e-11  Score=124.34  Aligned_cols=225  Identities=16%  Similarity=0.204  Sum_probs=159.4

Q ss_pred             CCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC----
Q 047260          550 SVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPF----  625 (784)
Q Consensus       550 ~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~----  625 (784)
                      ..+..++|++.-..++++..|-.|+|||-.... ...........|+|++|-|.+...++.+. .+.|.+|.....    
T Consensus        99 ~dlr~~aWhqH~~~fava~nddvVriy~ksst~-pt~Lks~sQrnvtclawRPlsaselavgC-r~gIciW~~s~tln~~  176 (445)
T KOG2139|consen   99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTC-PTKLKSVSQRNVTCLAWRPLSASELAVGC-RAGICIWSDSRTLNAN  176 (445)
T ss_pred             cceeeEeechhhhhhhhhccCcEEEEeccCCCC-CceecchhhcceeEEEeccCCcceeeeee-cceeEEEEcCcccccc
Confidence            457789999977788999999999999987632 32323334567999999998877777776 566889977521    


Q ss_pred             ee----------EEeec--CCeeEEEEecCCCEEEEEEC-CCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEE
Q 047260          626 LC----------THITK--GGTAQVRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASV  692 (784)
Q Consensus       626 ~~----------~~~~~--~~v~~v~fsp~~~~Ll~~s~-Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasg  692 (784)
                      ..          +....  ..|+.+.|.+++..+++++. |..|.|||..++..+.......+.+.-+.|+|||.+|+++
T Consensus       177 r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaA  256 (445)
T KOG2139|consen  177 RNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAA  256 (445)
T ss_pred             cccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEe
Confidence            10          11111  46889999999999999887 7899999999987766554566788999999999999888


Q ss_pred             eC-CeEEEEeCC-CCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECC--CC----------ceE--------
Q 047260          693 SQ-NLVKVWSMA-SGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMA--EN----------KSM--------  750 (784)
Q Consensus       693 sd-d~I~IwDl~-t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~--~~----------~~~--------  750 (784)
                      .- ...++|... +..+.+-..+ .+.|...+|+|+|++|+.+... .-++|.+.  ..          +..        
T Consensus       257 t~davfrlw~e~q~wt~erw~lg-sgrvqtacWspcGsfLLf~~sg-sp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e  334 (445)
T KOG2139|consen  257 TCDAVFRLWQENQSWTKERWILG-SGRVQTACWSPCGSFLLFACSG-SPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQE  334 (445)
T ss_pred             cccceeeeehhcccceecceecc-CCceeeeeecCCCCEEEEEEcC-CceEEEEeecCCCccccCcccceeeeeeccchh
Confidence            84 499999544 4444433333 3489999999999986655543 22333321  11          011        


Q ss_pred             -Eecc----cCCceEEEEEeCCCCEEEEEECCC
Q 047260          751 -TIAA----HENIISALAQSPVTGMVASASHDS  778 (784)
Q Consensus       751 -~~~~----h~~~V~slafspdg~~LaSgs~DG  778 (784)
                       +...    -.+.+.+++|.|.|.+||+.-..+
T Consensus       335 ~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~  367 (445)
T KOG2139|consen  335 VTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQ  367 (445)
T ss_pred             hhhhcCcccccCccceeeECCCCCEEEEEEcCC
Confidence             1111    246789999999999999875543

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.38  E-value=3.1e-11  Score=121.80  Aligned_cols=125  Identities=19%  Similarity=0.405  Sum_probs=95.1

Q ss_pred             EEEEECCC-CeEEEEEeC-CCCCEEEEEEcCCCCEEEEEe---CCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEE
Q 047260          656 VSIFDIET-DRQTHSLQG-HAELVNYICWDTNGDYLASVS---QNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTL  730 (784)
Q Consensus       656 I~IwDl~t-~~~i~~l~~-h~~~V~sl~~spdg~~Lasgs---dd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L  730 (784)
                      ..+|.++. ...+..+.- ..++|.+++|+|+|+.|++..   ...|.+||++ ++.+..+.  ...++.+.|+|+|++|
T Consensus        39 ~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l  115 (194)
T PF08662_consen   39 FELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFL  115 (194)
T ss_pred             EEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEE
Confidence            44444422 233334432 445799999999999877654   2389999997 66666664  4677899999999999


Q ss_pred             EEEECC---CeEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEEC------CCcEEEeC
Q 047260          731 LVVGGI---SSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASH------DSSVKLWK  784 (784)
Q Consensus       731 ~s~s~d---g~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs~------DG~V~IWd  784 (784)
                      ++++.+   |.|.+||+.+.+.+....|.. ++.++|+|||++|+++..      |+.++||+
T Consensus       116 ~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~-~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~  177 (194)
T PF08662_consen  116 VLAGFGNLNGDLEFWDVRKKKKISTFEHSD-ATDVEWSPDGRYLATATTSPRLRVDNGFKIWS  177 (194)
T ss_pred             EEEEccCCCcEEEEEECCCCEEeeccccCc-EEEEEEcCCCCEEEEEEeccceeccccEEEEE
Confidence            998754   679999999888886666665 789999999999999864      78889985

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.38  E-value=3.3e-11  Score=121.60  Aligned_cols=156  Identities=14%  Similarity=0.310  Sum_probs=114.2

Q ss_pred             EEEEEccCCCEEEEEeC----------CCeEEEEcCCCCcceeeecc-CCCCCeEEEEEcCCCCcEEEE-EeCCCeEEEE
Q 047260          553 TDVRFRPNSSQLATASV----------DKSVRLWDAANPNFCSQAYT-GHSSPIMSLDFHPKKTDLFCF-CDNDNEIQYW  620 (784)
Q Consensus       553 t~i~fspdg~~Latgs~----------Dg~I~IWdl~~~~~~~~~~~-~h~~~V~sl~~sp~~~~ll~s-gs~dg~I~iw  620 (784)
                      ..+.|+++|++|++-..          -+...||.++........+. ...++|.+++|+|++..++++ |..+..|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            46889999988765433          13456666644332333332 344579999999999876554 4467899999


Q ss_pred             eCCCCeeEEeecCCeeEEEEecCCCEEEEEEC---CCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe----
Q 047260          621 SINPFLCTHITKGGTAQVRFQPRIGQLLAAAS---DKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVS----  693 (784)
Q Consensus       621 Dl~~~~~~~~~~~~v~~v~fsp~~~~Ll~~s~---Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgs----  693 (784)
                      |++...........+..+.|+|+|+++++++.   .|.|.+||+++.+.+..+. | ..++.++|+|+|++|+++.    
T Consensus        89 d~~~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~r  166 (194)
T PF08662_consen   89 DVKGKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATATTSPR  166 (194)
T ss_pred             cCcccEeEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEeccc
Confidence            99844444444567889999999999999885   4679999999888887765 3 3478999999999999876    


Q ss_pred             ---CCeEEEEeCCCCceEEEe
Q 047260          694 ---QNLVKVWSMASGECIQEL  711 (784)
Q Consensus       694 ---dd~I~IwDl~t~~~i~~l  711 (784)
                         |+.++||++. |+.+.+.
T Consensus       167 ~~~dng~~Iw~~~-G~~l~~~  186 (194)
T PF08662_consen  167 LRVDNGFKIWSFQ-GRLLYKK  186 (194)
T ss_pred             eeccccEEEEEec-CeEeEec
Confidence               4488999984 6665544

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.38  E-value=3.6e-11  Score=126.46  Aligned_cols=234  Identities=15%  Similarity=0.168  Sum_probs=176.5

Q ss_pred             CCCCeEEEEEccCC--CEEEEEeCCCeEEEEcCCCCcceee-----eccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEE
Q 047260          548 HKSVVTDVRFRPNS--SQLATASVDKSVRLWDAANPNFCSQ-----AYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYW  620 (784)
Q Consensus       548 h~~~It~i~fspdg--~~Latgs~Dg~I~IWdl~~~~~~~~-----~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iw  620 (784)
                      ....|+.++|.-++  ..|+.++.|..+..+.+........     .......+|..+....   ..+++|..+|.+.+|
T Consensus        54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~d---g~Litc~~sG~l~~~  130 (412)
T KOG3881|consen   54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLAD---GTLITCVSSGNLQVR  130 (412)
T ss_pred             hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcC---CEEEEEecCCcEEEE
Confidence            34567777777644  3455555666777777765442211     2334456676666542   267788899999999


Q ss_pred             eCCCC-----eeE-EeecCCeeEEEEecCCCEEEE-EECC--CcEEEEECCCCeEEEEEeCC---------CCCEEEEEE
Q 047260          621 SINPF-----LCT-HITKGGTAQVRFQPRIGQLLA-AASD--KVVSIFDIETDRQTHSLQGH---------AELVNYICW  682 (784)
Q Consensus       621 Dl~~~-----~~~-~~~~~~v~~v~fsp~~~~Ll~-~s~D--g~I~IwDl~t~~~i~~l~~h---------~~~V~sl~~  682 (784)
                      .....     ..+ .....++..+.-++...++++ |+..  ..+.|||++..+.+..-+.-         .-.++++.|
T Consensus       131 ~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~F  210 (412)
T KOG3881|consen  131 HDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRF  210 (412)
T ss_pred             eccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecccee
Confidence            98732     222 222356667777777666666 6777  88999999988766554321         124577888


Q ss_pred             cCC--CCEEEEEeCC-eEEEEeCCCC-ceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE--EecccC
Q 047260          683 DTN--GDYLASVSQN-LVKVWSMASG-ECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM--TIAAHE  756 (784)
Q Consensus       683 spd--g~~Lasgsdd-~I~IwDl~t~-~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~--~~~~h~  756 (784)
                      -+.  ...|++++.- .|++||.+.+ +++..|.....++.++...|++++|+++..-+.+..||++.++..  .+.+-.
T Consensus       211 l~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~t  290 (412)
T KOG3881|consen  211 LEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGIT  290 (412)
T ss_pred             cCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCcc
Confidence            877  7788888754 9999999976 688899888999999999999999999999999999999999887  467889


Q ss_pred             CceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          757 NIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       757 ~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      +.|++|..+|...+|++||-|..|||+|
T Consensus       291 Gsirsih~hp~~~~las~GLDRyvRIhD  318 (412)
T KOG3881|consen  291 GSIRSIHCHPTHPVLASCGLDRYVRIHD  318 (412)
T ss_pred             CCcceEEEcCCCceEEeeccceeEEEee
Confidence            9999999999999999999999999997

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.38  E-value=1.9e-11  Score=141.93  Aligned_cols=265  Identities=15%  Similarity=0.209  Sum_probs=185.0

Q ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecC------CCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCC
Q 047260          506 RNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPE------DHKSVVTDVRFRPNSSQLATASVDKSVRLWDAA  579 (784)
Q Consensus       506 H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~------~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~  579 (784)
                      |-+.+++..+-.  +||+.| ..-.|.+||+.++..+..+.      .|...=.--   -.+.+++++..-+.+..=+..
T Consensus         6 ~~~~l~~~~~~~--~~llag-~gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~---l~~~~~v~~~~~~~v~~~~~~   79 (967)
T KOG0974|consen    6 SLGPLNLPQLVS--DYLLAG-SGPEILVYDLSSGCLIRHLIQSKILEVHRGEGKVK---LLSGKIVTCAKSDEVYVKEAS   79 (967)
T ss_pred             ccccccchhhcc--ceeeec-CCCceEEeeCCchhHhhhhhhhcccccccccccce---eccceEEEEEeecceeecchh
Confidence            334455555544  566654 45569999999877665443      330000000   023355555544444333322


Q ss_pred             CCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCCeeE-------EEEecCCCEEEEEEC
Q 047260          580 NPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQ-------VRFQPRIGQLLAAAS  652 (784)
Q Consensus       580 ~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v~~-------v~fsp~~~~Ll~~s~  652 (784)
                      ..  ....   ..+.|....+..+.. .++....+..+.+||.............-.+       +.++++.-++++|+.
T Consensus        80 ~~--~~~~---~s~wi~g~~l~~e~k-~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv  153 (967)
T KOG0974|consen   80 NQ--IIER---FSDWIFGAKLFEENK-KIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSV  153 (967)
T ss_pred             hh--hhhh---ccccccccchhhhcc-eEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccc
Confidence            11  1111   222333333333333 5666667889999999876665554433222       234566667888888


Q ss_pred             CCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEE-EeccCCCceEEEEEecCCCEE
Q 047260          653 DKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQ-ELSSNGNQFHSCVFHPSYSTL  730 (784)
Q Consensus       653 Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~-~l~~~~~~I~sl~fspdg~~L  730 (784)
                      -+.|.+|+....+....+.+|++.|.++.|+.||+++++.+|| ++++|++.+.+.+. ..-+|...|..++|+|+  .|
T Consensus       154 ~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i  231 (967)
T KOG0974|consen  154 FGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RI  231 (967)
T ss_pred             cccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--ee
Confidence            9999999998554444688999999999999999999999988 99999999987766 66789999999999999  89


Q ss_pred             EEEECCCeEEEEECCCCceEEecccC-CceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          731 LVVGGISSLELWNMAENKSMTIAAHE-NIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       731 ~s~s~dg~I~Iwdl~~~~~~~~~~h~-~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      ++++.|-+.++|+.+......+..|. ..|..++..++...++|++.||.+++||
T Consensus       232 ~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~  286 (967)
T KOG0974|consen  232 ITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWD  286 (967)
T ss_pred             EEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhh
Confidence            99999999999987766665677775 4699999999999999999999999996

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.36  E-value=3.3e-11  Score=124.71  Aligned_cols=249  Identities=14%  Similarity=0.201  Sum_probs=184.5

Q ss_pred             cceeEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEEC-CCCceeeecC-CCCCCeEEEEEccCCCEEEEEeCCCe
Q 047260          495 FTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNM-DTLQTESTPE-DHKSVVTDVRFRPNSSQLATASVDKS  572 (784)
Q Consensus       495 ~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~-~t~~~~~~l~-~h~~~It~i~fspdg~~Latgs~Dg~  572 (784)
                      +.+..+..++||.+.|++...-|..+-+++.+.|.+|+||-- +.++.-..+. .-..+++++.+.++...|++|-..|+
T Consensus        12 ~kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngt   91 (404)
T KOG1409|consen   12 KKPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGT   91 (404)
T ss_pred             cchhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecce
Confidence            455567788999999999999998888999999999999954 3444433332 23578999999999999999999999


Q ss_pred             EEEEcCCCC---cceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeE--EeecCCeeEEEEecCCCEE
Q 047260          573 VRLWDAANP---NFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCT--HITKGGTAQVRFQPRIGQL  647 (784)
Q Consensus       573 I~IWdl~~~---~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~--~~~~~~v~~v~fsp~~~~L  647 (784)
                      +.-+.+...   -...+.+..|...|..+.|+.... .+++++.|..+.---.+.+..+  ..+....+++.+.-.  +.
T Consensus        92 vtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e-~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~  168 (404)
T KOG1409|consen   92 VTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHE-WVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL--YA  168 (404)
T ss_pred             EEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCce-eEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE--EE
Confidence            988876532   224566678999999999987655 5666666665543323322221  111122222222221  55


Q ss_pred             EEEECCCcEEEEECC--CCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCc-eEEEeccCCCceEEEEE
Q 047260          648 LAAASDKVVSIFDIE--TDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGE-CIQELSSNGNQFHSCVF  723 (784)
Q Consensus       648 l~~s~Dg~I~IwDl~--t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~-~i~~l~~~~~~I~sl~f  723 (784)
                      ++|...|.|.+..+.  .-.++..+.+|.+.+++++|.+...+|+++..+ .|.+||+.-.+ ...++.+|...|..+..
T Consensus       169 fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~  248 (404)
T KOG1409|consen  169 FVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSY  248 (404)
T ss_pred             EecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhh
Confidence            666666777665544  446788899999999999999999999999977 99999997654 45677788899999988


Q ss_pred             ecCCCEEEEEECCCeEEEEECCC
Q 047260          724 HPSYSTLLVVGGISSLELWNMAE  746 (784)
Q Consensus       724 spdg~~L~s~s~dg~I~Iwdl~~  746 (784)
                      .+.-..+++++.||.|.+|+++.
T Consensus       249 ~~~t~~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  249 AQHTRQLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             hhhheeeeeccCCCeEEEEeccc
Confidence            88888999999999999999864

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.33  E-value=3.1e-10  Score=129.05  Aligned_cols=219  Identities=17%  Similarity=0.189  Sum_probs=149.4

Q ss_pred             EeecCCCceEEEEEcCCCCEEEEEeCC---CeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEE-EeCCC--eEEE
Q 047260          502 CIRSRNSKVTCCHFSSDGKLLASSGHD---RKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLAT-ASVDK--SVRL  575 (784)
Q Consensus       502 ~l~~H~~~V~~l~fspdg~~Lasgs~D---g~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Lat-gs~Dg--~I~I  575 (784)
                      .+..+...+....|+|||+.|+..+.+   ..|.+||+.+++... +....+.+....|+|||+.|+. .+.+|  .|.+
T Consensus       193 ~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~  271 (430)
T PRK00178        193 TLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYV  271 (430)
T ss_pred             EEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEE
Confidence            344577789999999999998876543   369999999876543 3334455667999999998874 44455  5888


Q ss_pred             EcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCC--eEEEEeCCCCeeEEeec--CCeeEEEEecCCCEEEEEE
Q 047260          576 WDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDN--EIQYWSINPFLCTHITK--GGTAQVRFQPRIGQLLAAA  651 (784)
Q Consensus       576 Wdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg--~I~iwDl~~~~~~~~~~--~~v~~v~fsp~~~~Ll~~s  651 (784)
                      ||+.++.  ...+..+........|+|++..++++...++  .|+++|+.++.......  .......|+|+++.++...
T Consensus       272 ~d~~~~~--~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~  349 (430)
T PRK00178        272 MDLASRQ--LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVH  349 (430)
T ss_pred             EECCCCC--eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEE
Confidence            8998765  2334455556677899999998887776554  57777887665443322  2234568999999998877


Q ss_pred             CC-C--cEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeC--C--eEEEEeCCCCceEEEeccCCCceEEEEEe
Q 047260          652 SD-K--VVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQ--N--LVKVWSMASGECIQELSSNGNQFHSCVFH  724 (784)
Q Consensus       652 ~D-g--~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsd--d--~I~IwDl~t~~~i~~l~~~~~~I~sl~fs  724 (784)
                      .+ +  .|.++|+.+++... +.. ........|+|||+.|+..+.  +  .|.++++. +.....+..+.+.+...+|+
T Consensus       350 ~~~~~~~l~~~dl~tg~~~~-lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~ws  426 (430)
T PRK00178        350 RQDGNFHVAAQDLQRGSVRI-LTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLPLPTAQGEVREPSWS  426 (430)
T ss_pred             ccCCceEEEEEECCCCCEEE-ccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCCccC
Confidence            53 3  58889998876433 322 222235689999999887663  2  67788875 44444555555566677777


Q ss_pred             cC
Q 047260          725 PS  726 (784)
Q Consensus       725 pd  726 (784)
                      |-
T Consensus       427 ~~  428 (430)
T PRK00178        427 PY  428 (430)
T ss_pred             CC
Confidence            63

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.31  E-value=3.2e-10  Score=129.40  Aligned_cols=218  Identities=17%  Similarity=0.200  Sum_probs=146.8

Q ss_pred             eecCCCceEEEEEcCCCCEEEEEeCC---CeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEE-EeCCCe--EEEE
Q 047260          503 IRSRNSKVTCCHFSSDGKLLASSGHD---RKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLAT-ASVDKS--VRLW  576 (784)
Q Consensus       503 l~~H~~~V~~l~fspdg~~Lasgs~D---g~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Lat-gs~Dg~--I~IW  576 (784)
                      +..+...+.+..|+|||+.|+..+.+   ..|++||+.+++... +....+.....+|+|||+.|+. .+.++.  |.+|
T Consensus       213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~  291 (448)
T PRK04792        213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVV  291 (448)
T ss_pred             eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEE
Confidence            34456678999999999988876543   258999998876533 2222334457899999998765 455664  7777


Q ss_pred             cCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCC--eEEEEeCCCCeeEEee-c-CCeeEEEEecCCCEEEEEEC
Q 047260          577 DAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDN--EIQYWSINPFLCTHIT-K-GGTAQVRFQPRIGQLLAAAS  652 (784)
Q Consensus       577 dl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg--~I~iwDl~~~~~~~~~-~-~~v~~v~fsp~~~~Ll~~s~  652 (784)
                      |+.++.  ...+..+...+...+|+|++..+++++..++  .|+++|+.+.+..... . ......+|+|+++.|+..+.
T Consensus       292 dl~tg~--~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~  369 (448)
T PRK04792        292 DIATKA--LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNR  369 (448)
T ss_pred             ECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEe
Confidence            887755  2334445556778899999998888776555  4666677766544332 2 22345689999999887765


Q ss_pred             -CC--cEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeC--C--eEEEEeCCCCceEEEeccCCCceEEEEEec
Q 047260          653 -DK--VVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQ--N--LVKVWSMASGECIQELSSNGNQFHSCVFHP  725 (784)
Q Consensus       653 -Dg--~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsd--d--~I~IwDl~t~~~i~~l~~~~~~I~sl~fsp  725 (784)
                       ++  .|.++|+.+++... +... .......|+|||+.|+..+.  +  .+++++. ++.....+..+...+...+|+|
T Consensus       370 ~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~Wsp  446 (448)
T PRK04792        370 TNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSPAWSP  446 (448)
T ss_pred             cCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCCccCC
Confidence             33  46667888776432 3222 12234579999998877552  2  5788886 5666666766666677778877


Q ss_pred             C
Q 047260          726 S  726 (784)
Q Consensus       726 d  726 (784)
                      -
T Consensus       447 ~  447 (448)
T PRK04792        447 F  447 (448)
T ss_pred             C
Confidence            3

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.31  E-value=6.8e-10  Score=125.84  Aligned_cols=236  Identities=17%  Similarity=0.145  Sum_probs=157.8

Q ss_pred             CeEEEEECCCCceeeecCCCCCCeEEEEEccCCCE--E-EEEeCCC--eEEEEcCCCCcceeeeccCCCCCeEEEEEcCC
Q 047260          529 RKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQ--L-ATASVDK--SVRLWDAANPNFCSQAYTGHSSPIMSLDFHPK  603 (784)
Q Consensus       529 g~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~--L-atgs~Dg--~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~  603 (784)
                      +.|.+.|.+.+.. ..+......+..-+|+|||+.  + ++...+|  .|.+.++.++..  ..+....+......|+||
T Consensus       165 ~~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~--~~lt~~~g~~~~p~wSPD  241 (428)
T PRK01029        165 GELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAG--KKILALQGNQLMPTFSPR  241 (428)
T ss_pred             ceEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCc--eEeecCCCCccceEECCC
Confidence            4677778775444 445556667788899999975  2 2443443  577778876652  222333445567899999


Q ss_pred             CCcEEEEEeCCC----eEEEEeCCC---CeeEEeec---CCeeEEEEecCCCEEEEEEC-CCc--EEEEECCC-CeEEEE
Q 047260          604 KTDLFCFCDNDN----EIQYWSINP---FLCTHITK---GGTAQVRFQPRIGQLLAAAS-DKV--VSIFDIET-DRQTHS  669 (784)
Q Consensus       604 ~~~ll~sgs~dg----~I~iwDl~~---~~~~~~~~---~~v~~v~fsp~~~~Ll~~s~-Dg~--I~IwDl~t-~~~i~~  669 (784)
                      |..++++.+.+|    .+.+|++..   ........   +.....+|+|+|+.|+..+. +|.  |+++++.. +.....
T Consensus       242 G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~  321 (428)
T PRK01029        242 KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRL  321 (428)
T ss_pred             CCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEE
Confidence            998887775444    344467654   22222222   23456899999998887764 564  44445542 233444


Q ss_pred             EeCCCCCEEEEEEcCCCCEEEEEeC--C--eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECC---CeEEEE
Q 047260          670 LQGHAELVNYICWDTNGDYLASVSQ--N--LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGI---SSLELW  742 (784)
Q Consensus       670 l~~h~~~V~sl~~spdg~~Lasgsd--d--~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~d---g~I~Iw  742 (784)
                      +..+...+....|+|||+.|+..+.  +  .|.+||+.+++... +......+....|+||++.|+..+.+   ..|++|
T Consensus       322 lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~v  400 (428)
T PRK01029        322 LTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLHLVYSAGNSNESELYLI  400 (428)
T ss_pred             eccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCEEEEEECCCCCceEEEE
Confidence            5545566778999999998887653  2  79999999887643 33333456788999999988866543   479999


Q ss_pred             ECCCCceEEecccCCceEEEEEeCCC
Q 047260          743 NMAENKSMTIAAHENIISALAQSPVT  768 (784)
Q Consensus       743 dl~~~~~~~~~~h~~~V~slafspdg  768 (784)
                      |+.+++...+....+.+...+|+|-.
T Consensus       401 dl~~g~~~~Lt~~~g~~~~p~Ws~~~  426 (428)
T PRK01029        401 SLITKKTRKIVIGSGEKRFPSWGAFP  426 (428)
T ss_pred             ECCCCCEEEeecCCCcccCceecCCC
Confidence            99988877776666777888998753

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.31  E-value=3.8e-09  Score=114.92  Aligned_cols=254  Identities=10%  Similarity=0.091  Sum_probs=167.5

Q ss_pred             CeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeC----------CCeEEEEcCCCCcceeeeccCC------C
Q 047260          529 RKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASV----------DKSVRLWDAANPNFCSQAYTGH------S  592 (784)
Q Consensus       529 g~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~----------Dg~I~IWdl~~~~~~~~~~~~h------~  592 (784)
                      +.|.|.|..+++.+..+..-..+-. + ++||++.|+++..          +..|.+||+.+.+.......+.      .
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~  104 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG  104 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence            8899999999999888865443332 4 9999999888765          7899999999987443333221      1


Q ss_pred             CCeEEEEEcCCCCcEEEEEeC-CCeEEEEeCCCCeeEEeecCCeeEEEEecCCCEEEEEECCCcEEEEECCC-CeE-EEE
Q 047260          593 SPIMSLDFHPKKTDLFCFCDN-DNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIET-DRQ-THS  669 (784)
Q Consensus       593 ~~V~sl~~sp~~~~ll~sgs~-dg~I~iwDl~~~~~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t-~~~-i~~  669 (784)
                      .....++++|+++.++++--. +..|.+.|+.+.+.+....-+.+...|-.......+-|.||......+.. ++. ...
T Consensus       105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~  184 (352)
T TIGR02658       105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKP  184 (352)
T ss_pred             CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEee
Confidence            223478999999988777645 89999999999888877664333222222222223334555544443332 121 111


Q ss_pred             ---EeCCCCCEEE-EEEcC-CCCEEEEEeCCeEEEEeCCCC-----ceEEEeccC-------CCceEEEEEecCCCEEEE
Q 047260          670 ---LQGHAELVNY-ICWDT-NGDYLASVSQNLVKVWSMASG-----ECIQELSSN-------GNQFHSCVFHPSYSTLLV  732 (784)
Q Consensus       670 ---l~~h~~~V~s-l~~sp-dg~~Lasgsdd~I~IwDl~t~-----~~i~~l~~~-------~~~I~sl~fspdg~~L~s  732 (784)
                         +.....++.. -.|.+ +|+++++..++.|.+.|+...     +.+..+...       ...+.-++++++++.+++
T Consensus       185 ~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV  264 (352)
T TIGR02658       185 TEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYL  264 (352)
T ss_pred             eeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEE
Confidence               1111111100 03345 899998888899999996443     333332211       123344999999999888


Q ss_pred             EE----------CCCeEEEEECCCCceEEecccCCceEEEEEeCCCC-EEEEEE-CCCcEEEeC
Q 047260          733 VG----------GISSLELWNMAENKSMTIAAHENIISALAQSPVTG-MVASAS-HDSSVKLWK  784 (784)
Q Consensus       733 ~s----------~dg~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~-~LaSgs-~DG~V~IWd  784 (784)
                      ..          ..+.|.++|..+++.+....-...+..++++||++ +|++.+ .++.|.|.|
T Consensus       265 ~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD  328 (352)
T TIGR02658       265 LADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFD  328 (352)
T ss_pred             EecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEE
Confidence            53          12479999999999986665667899999999999 888776 577788875

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.30  E-value=6.7e-10  Score=125.56  Aligned_cols=203  Identities=17%  Similarity=0.205  Sum_probs=145.2

Q ss_pred             CeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCC--CeEEEEeCCCCeeEE--eecCCeeEEEEecCCCE
Q 047260          571 KSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDND--NEIQYWSINPFLCTH--ITKGGTAQVRFQPRIGQ  646 (784)
Q Consensus       571 g~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~d--g~I~iwDl~~~~~~~--~~~~~v~~v~fsp~~~~  646 (784)
                      ..|.++|.....  .+.+..+...+.+..|+|++..++++...+  ..|++||+.++....  .+.+.+..++|+|+++.
T Consensus       170 ~~l~~~d~~g~~--~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~  247 (417)
T TIGR02800       170 YELQVADYDGAN--PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSK  247 (417)
T ss_pred             ceEEEEcCCCCC--CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCE
Confidence            368888876433  344445666789999999999777665443  579999998764433  34455677899999998


Q ss_pred             EEEEEC-C--CcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC----eEEEEeCCCCceEEEeccCCCceE
Q 047260          647 LLAAAS-D--KVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN----LVKVWSMASGECIQELSSNGNQFH  719 (784)
Q Consensus       647 Ll~~s~-D--g~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd----~I~IwDl~t~~~i~~l~~~~~~I~  719 (784)
                      |+.... +  ..|++||+.++... .+..+........|+|+|+.|+..++.    .|+++|+.+++.. .+..+...+.
T Consensus       248 l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~  325 (417)
T TIGR02800       248 LAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNA  325 (417)
T ss_pred             EEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCcc
Confidence            876543 3  46899999877543 344455555677999999988776632    6888898877643 4444556677


Q ss_pred             EEEEecCCCEEEEEECCC---eEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEECCC
Q 047260          720 SCVFHPSYSTLLVVGGIS---SLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHDS  778 (784)
Q Consensus       720 sl~fspdg~~L~s~s~dg---~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs~DG  778 (784)
                      ...|+|++++|+.++.++   .|.+||+.++....+... .......|+||+++|+.++.++
T Consensus       326 ~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~-~~~~~p~~spdg~~l~~~~~~~  386 (417)
T TIGR02800       326 SPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDT-GLDESPSFAPNGRMILYATTRG  386 (417)
T ss_pred             CeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCC-CCCCCceECCCCCEEEEEEeCC
Confidence            889999999999988875   799999988765544432 2345678999999888877654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.30  E-value=1.7e-08  Score=106.18  Aligned_cols=260  Identities=13%  Similarity=0.133  Sum_probs=179.6

Q ss_pred             CCCceEEEEEcCCCCEEEEEeC---CCeEEEEECCC--Cceee--ecCCCCCCeEEEEEccCCCEEEEEeC-CCeEEEEc
Q 047260          506 RNSKVTCCHFSSDGKLLASSGH---DRKVVLWNMDT--LQTES--TPEDHKSVVTDVRFRPNSSQLATASV-DKSVRLWD  577 (784)
Q Consensus       506 H~~~V~~l~fspdg~~Lasgs~---Dg~I~IWd~~t--~~~~~--~l~~h~~~It~i~fspdg~~Latgs~-Dg~I~IWd  577 (784)
                      +.+.++-++|+|+.++|.++..   +|.|..|.++.  |+...  ....-..+-+.+++++++++|+++.. -|.|.++-
T Consensus        38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p  117 (346)
T COG2706          38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYP  117 (346)
T ss_pred             ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEE
Confidence            5677899999999999988765   47788887764  44322  22222334488999999999999976 47899999


Q ss_pred             CCCCcceee--eccCCCCC----------eEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEe------ecCCeeEEE
Q 047260          578 AANPNFCSQ--AYTGHSSP----------IMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHI------TKGGTAQVR  639 (784)
Q Consensus       578 l~~~~~~~~--~~~~h~~~----------V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~------~~~~v~~v~  639 (784)
                      +.....+..  ....|.+.          +.+..+.|++++++++.-.--.|.+|++..+.....      -..+...|.
T Consensus       118 ~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~  197 (346)
T COG2706         118 LQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIV  197 (346)
T ss_pred             cccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEE
Confidence            866332211  12234333          888999999986666655667899999985443322      125668899


Q ss_pred             EecCCCEEEEEEC-CCcEEEEECCCC-eEEEEEeC---------CCCCEEEEEEcCCCCEEEEEeCC--eEEEEeCCC--
Q 047260          640 FQPRIGQLLAAAS-DKVVSIFDIETD-RQTHSLQG---------HAELVNYICWDTNGDYLASVSQN--LVKVWSMAS--  704 (784)
Q Consensus       640 fsp~~~~Ll~~s~-Dg~I~IwDl~t~-~~i~~l~~---------h~~~V~sl~~spdg~~Lasgsdd--~I~IwDl~t--  704 (784)
                      |+|++++.++.++ +++|.+|..... ..+..+..         .......|..++||++|.++..+  .|.+|.+..  
T Consensus       198 FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~  277 (346)
T COG2706         198 FHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDG  277 (346)
T ss_pred             EcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCC
Confidence            9999999988888 999999998873 22222221         23466788999999999998854  888887764  


Q ss_pred             Cc--eEEEeccCCCceEEEEEecCCCEEEEEECCC-eEEEEECC--CCceEEe--cccCCceEEEEEe
Q 047260          705 GE--CIQELSSNGNQFHSCVFHPSYSTLLVVGGIS-SLELWNMA--ENKSMTI--AAHENIISALAQS  765 (784)
Q Consensus       705 ~~--~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg-~I~Iwdl~--~~~~~~~--~~h~~~V~slafs  765 (784)
                      ++  .+.....+....+...|++.+++|+++..++ .|.+|.++  +++...+  ........||.|.
T Consensus       278 g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~  345 (346)
T COG2706         278 GKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL  345 (346)
T ss_pred             CEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence            32  2223334445578899999999999999875 68888665  4443322  2334445566654

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.28  E-value=2.3e-09  Score=116.29  Aligned_cols=272  Identities=16%  Similarity=0.191  Sum_probs=190.5

Q ss_pred             CCceEEEEEcCCCCEEEEEeCC---------------CeEEEEECCCCceeeecCCCCCC--eE-EEEEccCCCEEEEEe
Q 047260          507 NSKVTCCHFSSDGKLLASSGHD---------------RKVVLWNMDTLQTESTPEDHKSV--VT-DVRFRPNSSQLATAS  568 (784)
Q Consensus       507 ~~~V~~l~fspdg~~Lasgs~D---------------g~I~IWd~~t~~~~~~l~~h~~~--It-~i~fspdg~~Latgs  568 (784)
                      ...|..+.|+|.++||.+=...               ..+.|||+.++..+..+..-..+  .. -+.|+-+.+++|-. 
T Consensus        71 ~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-  149 (561)
T COG5354          71 HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-  149 (561)
T ss_pred             cCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-
Confidence            3459999999999999985543               34999999999999998776665  55 68888888877655 


Q ss_pred             CCCeEEEEcCCCCcceeeeccCC-CCCeEEEEEcCCCCc-EEEE-----EeCCCeEEEEeCCCCeeEEe---ecCCeeEE
Q 047260          569 VDKSVRLWDAANPNFCSQAYTGH-SSPIMSLDFHPKKTD-LFCF-----CDNDNEIQYWSINPFLCTHI---TKGGTAQV  638 (784)
Q Consensus       569 ~Dg~I~IWdl~~~~~~~~~~~~h-~~~V~sl~~sp~~~~-ll~s-----gs~dg~I~iwDl~~~~~~~~---~~~~v~~v  638 (784)
                      ....++|+++ ++......+..- ...|....|+|.++. .||.     ....+.+++|.+.....+..   ++..-..+
T Consensus       150 v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qL  228 (561)
T COG5354         150 VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQL  228 (561)
T ss_pred             ccCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEE
Confidence            3356999997 433222222211 356888889987432 2232     24577899999875444433   34555678


Q ss_pred             EEecCCCEEEEEEC-----------CCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--CC-eEEEEeCCC
Q 047260          639 RFQPRIGQLLAAAS-----------DKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVS--QN-LVKVWSMAS  704 (784)
Q Consensus       639 ~fsp~~~~Ll~~s~-----------Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgs--dd-~I~IwDl~t  704 (784)
                      .|++.|.+|++-..           +..++|+++....+ .....-.++|...+|.|.++.+++++  .. .+.++|++.
T Consensus       229 kW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i-~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~  307 (561)
T COG5354         229 KWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSI-PVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRG  307 (561)
T ss_pred             EEecCCceEEEEEEEeeecccceeccceEEEEeeccccc-ceeccccccceeeeecccCCceeEEecccccceeeccccc
Confidence            89999988765321           35688888874433 33335688999999999998887766  33 899999987


Q ss_pred             CceEEEeccCCCceEEEEEecCCCEEEEEECC---CeEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEE------
Q 047260          705 GECIQELSSNGNQFHSCVFHPSYSTLLVVGGI---SSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASAS------  775 (784)
Q Consensus       705 ~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~d---g~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs------  775 (784)
                      . ....  .....=+.+.|+|.++++++++-|   |.|.+||......+.-.-......-+.|+||+.++.+..      
T Consensus       308 N-l~~~--~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~  384 (561)
T COG5354         308 N-LRFY--FPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLR  384 (561)
T ss_pred             c-eEEe--cCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCCcccc
Confidence            6 3333  334445778999999999998877   689999988776553221222344567999999887763      


Q ss_pred             CCCcEEEeC
Q 047260          776 HDSSVKLWK  784 (784)
Q Consensus       776 ~DG~V~IWd  784 (784)
                      .|..|+|||
T Consensus       385 ~Dn~i~l~~  393 (561)
T COG5354         385 VDNSIKLWD  393 (561)
T ss_pred             cCcceEEEE
Confidence            478899996

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.27  E-value=6.1e-10  Score=122.06  Aligned_cols=247  Identities=13%  Similarity=0.224  Sum_probs=173.1

Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCC--CEEEE-----EeCCCeEEEEcCCCCcc
Q 047260          511 TCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNS--SQLAT-----ASVDKSVRLWDAANPNF  583 (784)
Q Consensus       511 ~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg--~~Lat-----gs~Dg~I~IWdl~~~~~  583 (784)
                      ++..|+.|..+.| --..+.|.+|++.+.+.+.. .-|...|+.+.++|.+  ..+|+     .+.-..|+||.+.....
T Consensus       129 W~~qfs~dEsl~a-rlv~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~  206 (566)
T KOG2315|consen  129 WVPQFSIDESLAA-RLVSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQ  206 (566)
T ss_pred             cccccccchhhhh-hhhcceEEEEecCCccceee-eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccc
Confidence            6888988876433 23356799999987544332 2478889999999963  23333     24456899998873221


Q ss_pred             ----eeeeccCCCCCeEEEEEcCCCCcEEEEEeC--C---------CeEEEEeCCCCeeEEee--cCCeeEEEEecCCCE
Q 047260          584 ----CSQAYTGHSSPIMSLDFHPKKTDLFCFCDN--D---------NEIQYWSINPFLCTHIT--KGGTAQVRFQPRIGQ  646 (784)
Q Consensus       584 ----~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~--d---------g~I~iwDl~~~~~~~~~--~~~v~~v~fsp~~~~  646 (784)
                          ..+.|  ....-..+.|++-+..+|+..+.  |         ..+++.+++...+...+  .++|.++.|+|++..
T Consensus       207 ~~~~a~ksF--Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~E  284 (566)
T KOG2315|consen  207 HQPVANKSF--FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGRE  284 (566)
T ss_pred             cchhhhccc--cccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCE
Confidence                11112  12334567888888777665543  2         37888888855555444  489999999999988


Q ss_pred             EEEEEC--CCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe----CCeEEEEeCCCCceEEEeccCCCceEE
Q 047260          647 LLAAAS--DKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVS----QNLVKVWSMASGECIQELSSNGNQFHS  720 (784)
Q Consensus       647 Ll~~s~--Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgs----dd~I~IwDl~t~~~i~~l~~~~~~I~s  720 (784)
                      ++++..  -..+.|||++ +.++..+  ..++-+++-|+|.|++|+.++    .|.|.|||+.+.+++..+....  .+-
T Consensus       285 F~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~  359 (566)
T KOG2315|consen  285 FAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTV  359 (566)
T ss_pred             EEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC--ceE
Confidence            777654  6899999987 5555555  567788999999999998877    3389999999999988887654  466


Q ss_pred             EEEecCCCEEEEEEC------CCeEEEEECCCCceEEecccCCceEEEEEeCC
Q 047260          721 CVFHPSYSTLLVVGG------ISSLELWNMAENKSMTIAAHENIISALAQSPV  767 (784)
Q Consensus       721 l~fspdg~~L~s~s~------dg~I~Iwdl~~~~~~~~~~h~~~V~slafspd  767 (784)
                      +.|+|||.+|++++.      |+.++||++...... ..........++|-|.
T Consensus       360 ~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~-~~~f~sEL~qv~W~P~  411 (566)
T KOG2315|consen  360 FEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLH-EKMFKSELLQVEWRPF  411 (566)
T ss_pred             EEEcCCCcEEEEEeccccEEecCCeEEEEecCceee-hhhhhHhHhheeeeec
Confidence            899999999999987      578999998655433 1111224566666653

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.24  E-value=3.7e-11  Score=129.96  Aligned_cols=279  Identities=15%  Similarity=0.211  Sum_probs=193.8

Q ss_pred             EEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCC-------CceeeecCCCCCCeEEEEEccCCCEEEEEeCCC
Q 047260          499 EVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDT-------LQTESTPEDHKSVVTDVRFRPNSSQLATASVDK  571 (784)
Q Consensus       499 ~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t-------~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg  571 (784)
                      .+..+.+|...|..++--.+.+-+++++.|++|++|.++.       ..+..++..|+.+|.++.|-.+.++++++  ||
T Consensus       727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~  804 (1034)
T KOG4190|consen  727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG  804 (1034)
T ss_pred             eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence            4566889999999998877888899999999999999863       33566788999999999999998888775  88


Q ss_pred             eEEEEcCCCCcceeeecc-CCCCCeEEEEEcC--CCCcEEEEEeCCCeEEEEeCCCCeeEEeec--------CCeeEEEE
Q 047260          572 SVRLWDAANPNFCSQAYT-GHSSPIMSLDFHP--KKTDLFCFCDNDNEIQYWSINPFLCTHITK--------GGTAQVRF  640 (784)
Q Consensus       572 ~I~IWdl~~~~~~~~~~~-~h~~~V~sl~~sp--~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~--------~~v~~v~f  640 (784)
                      .|++||.--+........ ...+.+..+...+  +...+++.|+...+|+++|.+....+...+        ..+.++++
T Consensus       805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV  884 (1034)
T KOG4190|consen  805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV  884 (1034)
T ss_pred             cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence            999999766553322221 1122233333333  334455556889999999999765444332        34678999


Q ss_pred             ecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEE-EeCCCCceEEEeccCCCce
Q 047260          641 QPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVS-QNLVKV-WSMASGECIQELSSNGNQF  718 (784)
Q Consensus       641 sp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgs-dd~I~I-wDl~t~~~i~~l~~~~~~I  718 (784)
                      .+.|++++++-+.|.|.+.|.++|+.+..+....-....++- |....|+... +.++.| |...++......+....+.
T Consensus       885 a~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-psdq~L~~saldHslaVnWhaldgimh~q~kpppepa  963 (1034)
T KOG4190|consen  885 ADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-PSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPA  963 (1034)
T ss_pred             ccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-chhHHHHhhcccceeEeeehhcCCeeeeccCCCCcch
Confidence            999999999999999999999999998887755544444443 4455555544 558888 8877776555554433322


Q ss_pred             EEEEEecCCCEEEEEECCCeEEEEECCCC-------ceEEecccCCceEEEEEeCCCCEEEEEECCCcEEE
Q 047260          719 HSCVFHPSYSTLLVVGGISSLELWNMAEN-------KSMTIAAHENIISALAQSPVTGMVASASHDSSVKL  782 (784)
Q Consensus       719 ~sl~fspdg~~L~s~s~dg~I~Iwdl~~~-------~~~~~~~h~~~V~slafspdg~~LaSgs~DG~V~I  782 (784)
                      .-  .-.-|..+++......+.+|.-...       .++......+..++++.-|-+.-+..|+..|.|.+
T Consensus       964 hf--lqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen  964 HF--LQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred             hh--hhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence            11  1123445666666667777742211       12223345677888998888887888888888875

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.24  E-value=8.5e-10  Score=122.83  Aligned_cols=273  Identities=17%  Similarity=0.225  Sum_probs=196.3

Q ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC---------------ceeeecCCCCCCeEEEEEccCCCEEEEEeCC
Q 047260          506 RNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTL---------------QTESTPEDHKSVVTDVRFRPNSSQLATASVD  570 (784)
Q Consensus       506 H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~---------------~~~~~l~~h~~~It~i~fspdg~~Latgs~D  570 (784)
                      .+....|++|+....|+|+|+.||.++|..+.+.               ..-.++.+|.+.|.-+.|+.+...|-|+..+
T Consensus        13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~   92 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS   92 (1189)
T ss_pred             CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence            4456899999999999999999999999987642               1224567999999999999998899999999


Q ss_pred             CeEEEEcCCCCcceeeecc-CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEE-eec-CCeeEEEEecCCCEE
Q 047260          571 KSVRLWDAANPNFCSQAYT-GHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTH-ITK-GGTAQVRFQPRIGQL  647 (784)
Q Consensus       571 g~I~IWdl~~~~~~~~~~~-~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~-~~~-~~v~~v~fsp~~~~L  647 (784)
                      |.|.||-+-.+..+...+. ...+.|.+++|+.+|. -++....||.|.+=.++..+... .++ .....+.|++|...+
T Consensus        93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~-kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~  171 (1189)
T KOG2041|consen   93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGT-KICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQA  171 (1189)
T ss_pred             ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCc-EEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHH
Confidence            9999999988776554443 4557789999999988 56677889998887776544321 122 234568899999999


Q ss_pred             EEEECCCcEEEEECCCC-------eEEEE----EeCCCCCEEEEEEc--------CCCCEEEEEeCC-eEEEEeCCCCce
Q 047260          648 LAAASDKVVSIFDIETD-------RQTHS----LQGHAELVNYICWD--------TNGDYLASVSQN-LVKVWSMASGEC  707 (784)
Q Consensus       648 l~~s~Dg~I~IwDl~t~-------~~i~~----l~~h~~~V~sl~~s--------pdg~~Lasgsdd-~I~IwDl~t~~~  707 (784)
                      +.+-..|.+.+||....       .+...    +......|..++|.        |+...|+++-++ .+.|..-.+...
T Consensus       172 Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~  251 (1189)
T KOG2041|consen  172 LFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPE  251 (1189)
T ss_pred             HhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCC
Confidence            88888999999997542       11111    12233346677774        466677777755 676665444322


Q ss_pred             EEEeccCCCceEEEEEecCCCEEEEEECCC---------eEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEECCC
Q 047260          708 IQELSSNGNQFHSCVFHPSYSTLLVVGGIS---------SLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHDS  778 (784)
Q Consensus       708 i~~l~~~~~~I~sl~fspdg~~L~s~s~dg---------~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs~DG  778 (784)
                      ...+.. +-.+....|+++|..|++++.+.         .|.+|..-....-++......|++++|-..|-.++.+ .|+
T Consensus       252 Pvv~dt-gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkvpg~~It~lsWEg~gLriA~A-vds  329 (1189)
T KOG2041|consen  252 PVVVDT-GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKVPGSCITGLSWEGTGLRIAIA-VDS  329 (1189)
T ss_pred             CeEEec-ccEeecceecCCCcEEEEccCcccccCccccceEEEeccchhheEEEecCCceeeeeEEcCCceEEEEE-ecc
Confidence            222222 26678899999999999998752         5667665544444677777889999998776555554 355


Q ss_pred             cEE
Q 047260          779 SVK  781 (784)
Q Consensus       779 ~V~  781 (784)
                      .|.
T Consensus       330 fiy  332 (1189)
T KOG2041|consen  330 FIY  332 (1189)
T ss_pred             eEE
Confidence            554

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.23  E-value=2.6e-08  Score=108.44  Aligned_cols=231  Identities=11%  Similarity=0.105  Sum_probs=148.5

Q ss_pred             EcCCCCEEEEEeC----------CCeEEEEECCCCceeeecCCC-------CCCeEEEEEccCCCEEEEEeC--CCeEEE
Q 047260          515 FSSDGKLLASSGH----------DRKVVLWNMDTLQTESTPEDH-------KSVVTDVRFRPNSSQLATASV--DKSVRL  575 (784)
Q Consensus       515 fspdg~~Lasgs~----------Dg~I~IWd~~t~~~~~~l~~h-------~~~It~i~fspdg~~Latgs~--Dg~I~I  575 (784)
                      +||||+.|+++..          +..|.|||..+++.+..+..-       ......++++|||++|++...  +..|.|
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V  132 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV  132 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence            9999998877765          788999999999999888632       223347899999999998763  689999


Q ss_pred             EcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCC-Cee----EEeecC---Ce-eEEEEec-CCC
Q 047260          576 WDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINP-FLC----THITKG---GT-AQVRFQP-RIG  645 (784)
Q Consensus       576 Wdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~-~~~----~~~~~~---~v-~~v~fsp-~~~  645 (784)
                      .|+.+.+.....-.+  +...-...+ +..++ +.| .||......+.. ++.    ...+..   .+ ..-.|.+ ++.
T Consensus       133 vD~~~~kvv~ei~vp--~~~~vy~t~-e~~~~-~~~-~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~  207 (352)
T TIGR02658       133 VDLEGKAFVRMMDVP--DCYHIFPTA-NDTFF-MHC-RDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGR  207 (352)
T ss_pred             EECCCCcEEEEEeCC--CCcEEEEec-CCccE-EEe-ecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCc
Confidence            999997743333221  111111111 11111 111 233333322221 110    001111   00 0003455 677


Q ss_pred             EEEEEECCCcEEEEECCCC-----eEEEEEeC-------CCCCEEEEEEcCCCCEEEEEe-----------CCeEEEEeC
Q 047260          646 QLLAAASDKVVSIFDIETD-----RQTHSLQG-------HAELVNYICWDTNGDYLASVS-----------QNLVKVWSM  702 (784)
Q Consensus       646 ~Ll~~s~Dg~I~IwDl~t~-----~~i~~l~~-------h~~~V~sl~~spdg~~Lasgs-----------dd~I~IwDl  702 (784)
                      ++++... |.|++.|+...     +.+..+..       ..+.+.-++++++++.+++..           .+.|.++|.
T Consensus       208 ~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~  286 (352)
T TIGR02658       208 LVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDA  286 (352)
T ss_pred             EEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEEC
Confidence            7766666 99999996443     33332221       223344599999999888743           148999999


Q ss_pred             CCCceEEEeccCCCceEEEEEecCCC-EEEEEE-CCCeEEEEECCCCceEEe
Q 047260          703 ASGECIQELSSNGNQFHSCVFHPSYS-TLLVVG-GISSLELWNMAENKSMTI  752 (784)
Q Consensus       703 ~t~~~i~~l~~~~~~I~sl~fspdg~-~L~s~s-~dg~I~Iwdl~~~~~~~~  752 (784)
                      .+++.+..+.. +..+..++++||++ +|++.. .++.|.++|..+++.+..
T Consensus       287 ~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~  337 (352)
T TIGR02658       287 KTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSS  337 (352)
T ss_pred             CCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEee
Confidence            99999998875 35789999999999 777666 467899999999987743

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.23  E-value=3.5e-09  Score=120.01  Aligned_cols=211  Identities=12%  Similarity=0.104  Sum_probs=139.6

Q ss_pred             CeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCc--EEEEEeCCC--eEEEEeCCCCee--EEeecCCeeEEEEecCC
Q 047260          571 KSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTD--LFCFCDNDN--EIQYWSINPFLC--THITKGGTAQVRFQPRI  644 (784)
Q Consensus       571 g~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~--ll~sgs~dg--~I~iwDl~~~~~--~~~~~~~v~~v~fsp~~  644 (784)
                      +.|.+.|.+...  .+.+......+.+-.|+||+..  ++++...++  .|++.++..+..  +..+.+.....+|+|||
T Consensus       165 ~~l~~~d~dG~~--~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG  242 (428)
T PRK01029        165 GELWSVDYDGQN--LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRK  242 (428)
T ss_pred             ceEEEEcCCCCC--ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCC
Confidence            356777776544  2334444566778899999976  333555444  578888876543  33345666678999999


Q ss_pred             CEEEEEEC-CC----cEEEEECCCC---eEEEEEeCCCCCEEEEEEcCCCCEEEEEeC--C--eEEEEeCCC-CceEEEe
Q 047260          645 GQLLAAAS-DK----VVSIFDIETD---RQTHSLQGHAELVNYICWDTNGDYLASVSQ--N--LVKVWSMAS-GECIQEL  711 (784)
Q Consensus       645 ~~Ll~~s~-Dg----~I~IwDl~t~---~~i~~l~~h~~~V~sl~~spdg~~Lasgsd--d--~I~IwDl~t-~~~i~~l  711 (784)
                      +.|+.... +|    .+.+|++..+   +.......+.......+|+|||+.|+..++  +  .|.++++.. +.....+
T Consensus       243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~l  322 (428)
T PRK01029        243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLL  322 (428)
T ss_pred             CEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEe
Confidence            99887664 22    3444676652   333333333344567899999998887663  3  466666643 3334455


Q ss_pred             ccCCCceEEEEEecCCCEEEEEECC---CeEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEEC-C--CcEEEe
Q 047260          712 SSNGNQFHSCVFHPSYSTLLVVGGI---SSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASH-D--SSVKLW  783 (784)
Q Consensus       712 ~~~~~~I~sl~fspdg~~L~s~s~d---g~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs~-D--G~V~IW  783 (784)
                      ......+....|+|||+.|+..+.+   ..|.+||+.+++...+......+....|+|||+.|+.... +  ..|.+|
T Consensus       323 t~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~v  400 (428)
T PRK01029        323 TKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLI  400 (428)
T ss_pred             ccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEE
Confidence            5555567788999999999887654   3699999999988766655556788999999998775443 2  345554

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.23  E-value=1.6e-08  Score=113.01  Aligned_cols=253  Identities=12%  Similarity=0.020  Sum_probs=160.2

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCe--
Q 047260          518 DGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPI--  595 (784)
Q Consensus       518 dg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V--  595 (784)
                      ++..+++++.++.|..+|..+++.+...... ..+.+.... .+..++.++.++.|..||.++++..-. +......+  
T Consensus       104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~-~~~~~~~~~~  180 (377)
T TIGR03300       104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWT-YSRVTPALTL  180 (377)
T ss_pred             cCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeE-EccCCCceee
Confidence            4667888889999999999999988776433 222221111 345677788899999999998773322 22111111  


Q ss_pred             ---EEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecC--C-----e---eEEEEe--cCCCEEEEEECCCcEEEEE
Q 047260          596 ---MSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKG--G-----T---AQVRFQ--PRIGQLLAAASDKVVSIFD  660 (784)
Q Consensus       596 ---~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~--~-----v---~~v~fs--p~~~~Ll~~s~Dg~I~IwD  660 (784)
                         .+..+. + . .++.+..++.+..+|.++++.+.....  .     +   ..+.-+  -.++.+++++.+|.++.||
T Consensus       181 ~~~~sp~~~-~-~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d  257 (377)
T TIGR03300       181 RGSASPVIA-D-G-GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALD  257 (377)
T ss_pred             cCCCCCEEE-C-C-EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEE
Confidence               111121 2 2 566777889999999988766543221  0     0   001001  1356888888999999999


Q ss_pred             CCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEeCCCCceEEEeccCC-CceEEEEEecCCCEEEEEECCCe
Q 047260          661 IETDRQTHSLQGHAELVNYICWDTNGDYLASVS-QNLVKVWSMASGECIQELSSNG-NQFHSCVFHPSYSTLLVVGGISS  738 (784)
Q Consensus       661 l~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgs-dd~I~IwDl~t~~~i~~l~~~~-~~I~sl~fspdg~~L~s~s~dg~  738 (784)
                      .++++.+......  .......  ++..+++++ ++.|..+|..+++.+....... ..+.....  .+..|++++.+|.
T Consensus       258 ~~tG~~~W~~~~~--~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~  331 (377)
T TIGR03300       258 LRSGRVLWKRDAS--SYQGPAV--DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGY  331 (377)
T ss_pred             CCCCcEEEeeccC--CccCceE--eCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCE
Confidence            9999887766521  1122222  344555544 5699999999998887663222 22222223  3568999999999


Q ss_pred             EEEEECCCCceE-EecccCCce-EEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          739 LELWNMAENKSM-TIAAHENII-SALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       739 I~Iwdl~~~~~~-~~~~h~~~V-~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      |+++|..+++.+ .+..+...+ ....+. + +.|+.++.||.|..|.
T Consensus       332 l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~~  377 (377)
T TIGR03300       332 LHWLSREDGSFVARLKTDGSGIASPPVVV-G-DGLLVQTRDGDLYAFR  377 (377)
T ss_pred             EEEEECCCCCEEEEEEcCCCccccCCEEE-C-CEEEEEeCCceEEEeC
Confidence            999999999887 444444333 233333 3 4588899999998773

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.21  E-value=3.6e-08  Score=103.86  Aligned_cols=256  Identities=13%  Similarity=0.158  Sum_probs=176.5

Q ss_pred             CCeEEEEECCCCc--e-eeecCCCCCCeEEEEEccCCCEEEEEeCC---CeEEEEcCCC--Ccce-eeeccCCCCCeEEE
Q 047260          528 DRKVVLWNMDTLQ--T-ESTPEDHKSVVTDVRFRPNSSQLATASVD---KSVRLWDAAN--PNFC-SQAYTGHSSPIMSL  598 (784)
Q Consensus       528 Dg~I~IWd~~t~~--~-~~~l~~h~~~It~i~fspdg~~Latgs~D---g~I~IWdl~~--~~~~-~~~~~~h~~~V~sl  598 (784)
                      +.-|++|++++..  . ...+-.+.+.++-|+|+|+.++|+++..+   |.|..|.++.  ++.. +........+.+.+
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv   94 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV   94 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence            3559999988322  1 11223567889999999999999998664   6788887765  3311 11111222344889


Q ss_pred             EEcCCCCcEEEEEeCCCeEEEEeCCC-Ce-----eEEeecC----------CeeEEEEecCCCEEEEEEC-CCcEEEEEC
Q 047260          599 DFHPKKTDLFCFCDNDNEIQYWSINP-FL-----CTHITKG----------GTAQVRFQPRIGQLLAAAS-DKVVSIFDI  661 (784)
Q Consensus       599 ~~sp~~~~ll~sgs~dg~I~iwDl~~-~~-----~~~~~~~----------~v~~v~fsp~~~~Ll~~s~-Dg~I~IwDl  661 (784)
                      ++++++..++++....|.|.++-++. +.     .+..+.+          ++....+.|++++|++... -..|.+|++
T Consensus        95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~  174 (346)
T COG2706          95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL  174 (346)
T ss_pred             EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence            99999998888888899999998864 11     1112222          3677889999999999887 478999999


Q ss_pred             CCCeEEEEEe---CCCCCEEEEEEcCCCCEEEEEe--CCeEEEEeCCCC----ceEEEec------cCCCceEEEEEecC
Q 047260          662 ETDRQTHSLQ---GHAELVNYICWDTNGDYLASVS--QNLVKVWSMASG----ECIQELS------SNGNQFHSCVFHPS  726 (784)
Q Consensus       662 ~t~~~i~~l~---~h~~~V~sl~~spdg~~Lasgs--dd~I~IwDl~t~----~~i~~l~------~~~~~I~sl~fspd  726 (784)
                      ..++....-.   .....-+.|.|+|++++..+..  +++|.+|.....    +.+..+.      ........+.++++
T Consensus       175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~d  254 (346)
T COG2706         175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPD  254 (346)
T ss_pred             ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCC
Confidence            9775432211   2444568899999999988877  459999998773    2233322      12345678899999


Q ss_pred             CCEEEEEECC-CeEEEEECCCC-ceEEe----cccCCceEEEEEeCCCCEEEEEECC-CcEEEe
Q 047260          727 YSTLLVVGGI-SSLELWNMAEN-KSMTI----AAHENIISALAQSPVTGMVASASHD-SSVKLW  783 (784)
Q Consensus       727 g~~L~s~s~d-g~I~Iwdl~~~-~~~~~----~~h~~~V~slafspdg~~LaSgs~D-G~V~IW  783 (784)
                      |++|+++... ..|.+|.+... ..+.+    ..+....+.+.|++.+++|+++..| ..|.||
T Consensus       255 GrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf  318 (346)
T COG2706         255 GRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVF  318 (346)
T ss_pred             CCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEE
Confidence            9998888764 47888877654 22322    2334447899999999999988764 346665

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.19  E-value=2.8e-09  Score=117.85  Aligned_cols=185  Identities=18%  Similarity=0.236  Sum_probs=147.5

Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCceeeecCC---CCCCeEEEEEc--------------------cCCCEEEEEeCCCeE
Q 047260          517 SDGKLLASSGHDRKVVLWNMDTLQTESTPED---HKSVVTDVRFR--------------------PNSSQLATASVDKSV  573 (784)
Q Consensus       517 pdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~---h~~~It~i~fs--------------------pdg~~Latgs~Dg~I  573 (784)
                      |-..++|....||.++|||..+++....+..   -++..++..|.                    .+...|+-|...|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            4567999999999999999998877666542   23455666663                    123467888889999


Q ss_pred             EEEcCCCCcceeeec-cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEE
Q 047260          574 RLWDAANPNFCSQAY-TGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLA  649 (784)
Q Consensus       574 ~IWdl~~~~~~~~~~-~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~  649 (784)
                      .+|++..++...+.. ..|.+.|.++.++.+-. .|.+++.|+.+..|+......++..+   ..+..++++||+..+++
T Consensus        83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~-ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~  161 (541)
T KOG4547|consen   83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLG-CIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLT  161 (541)
T ss_pred             EEEEecCCeEEEEEecCCCCCcceeeecccccC-ceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEe
Confidence            999999877444333 47999999999886654 88899999999999999888887776   45788999999998888


Q ss_pred             EECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCC-----CCEEEEEe--CCeEEEEeCCC
Q 047260          650 AASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTN-----GDYLASVS--QNLVKVWSMAS  704 (784)
Q Consensus       650 ~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spd-----g~~Lasgs--dd~I~IwDl~t  704 (784)
                      ++  +.|++||+++++.+..|.+|.++|+++.|..+     |.++.++.  +..+.+|-+..
T Consensus       162 as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  162 AS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             cc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            77  78999999999999999999999999999876     77777765  33666775543

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.18  E-value=1.4e-09  Score=112.82  Aligned_cols=256  Identities=16%  Similarity=0.278  Sum_probs=170.1

Q ss_pred             CCcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcC
Q 047260          438 GSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSS  517 (784)
Q Consensus       438 ~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fsp  517 (784)
                      ..+++++.|...+++ |++|..+|.|.+|-......+...+-+..        .+....|.-+..+. -..+|..+.|.+
T Consensus        25 adiis~vef~~~Ge~-LatGdkgGRVv~f~r~~~~~~ey~~~t~f--------qshepEFDYLkSle-ieEKinkIrw~~   94 (433)
T KOG1354|consen   25 ADIISAVEFDHYGER-LATGDKGGRVVLFEREKLYKGEYNFQTEF--------QSHEPEFDYLKSLE-IEEKINKIRWLD   94 (433)
T ss_pred             hcceeeEEeecccce-EeecCCCCeEEEeecccccccceeeeeee--------eccCcccchhhhhh-hhhhhhhceecC
Confidence            456777888555555 45799999999986554443222111110        01111111111111 346799999998


Q ss_pred             CCC--EEEEEeCCCeEEEEECCCCcee-----------------------------------eec-CCCCCCeEEEEEcc
Q 047260          518 DGK--LLASSGHDRKVVLWNMDTLQTE-----------------------------------STP-EDHKSVVTDVRFRP  559 (784)
Q Consensus       518 dg~--~Lasgs~Dg~I~IWd~~t~~~~-----------------------------------~~l-~~h~~~It~i~fsp  559 (784)
                      ++.  .++..+.|.+|++|.+......                                   +.+ ..|.-.|.+|.++.
T Consensus        95 ~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns  174 (433)
T KOG1354|consen   95 DGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS  174 (433)
T ss_pred             CCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC
Confidence            665  5677788999999987531110                                   011 25888899999999


Q ss_pred             CCCEEEEEeCCCeEEEEcCCCCcceeee--ccC-----CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe-eEE--
Q 047260          560 NSSQLATASVDKSVRLWDAANPNFCSQA--YTG-----HSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFL-CTH--  629 (784)
Q Consensus       560 dg~~Latgs~Dg~I~IWdl~~~~~~~~~--~~~-----h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~-~~~--  629 (784)
                      |...++++ .|=.|.+|+++-......+  +..     -..-|++..|+|....+|+-++..|.|++.|++... |..  
T Consensus       175 D~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hs  253 (433)
T KOG1354|consen  175 DKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHS  253 (433)
T ss_pred             ccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchh
Confidence            99888886 5678999998754322221  122     234588999999999899999999999999998321 110  


Q ss_pred             -e---------------ecCCeeEEEEecCCCEEEEEECCCcEEEEECC-CCeEEEEEeCCCC------------CE---
Q 047260          630 -I---------------TKGGTAQVRFQPRIGQLLAAASDKVVSIFDIE-TDRQTHSLQGHAE------------LV---  677 (784)
Q Consensus       630 -~---------------~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~-t~~~i~~l~~h~~------------~V---  677 (784)
                       .               .-..|..+.|+..|+++++-.. -+|++||+. ..+++.++..|..            .|   
T Consensus       254 KlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdK  332 (433)
T KOG1354|consen  254 KLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDK  332 (433)
T ss_pred             hhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhhe
Confidence             0               1145678899999998887544 789999994 4566666654432            22   


Q ss_pred             EEEEEcCCCCEEEEEeCC-eEEEEeCCCC
Q 047260          678 NYICWDTNGDYLASVSQN-LVKVWSMASG  705 (784)
Q Consensus       678 ~sl~~spdg~~Lasgsdd-~I~IwDl~t~  705 (784)
                      ..++|+.++.++++|+-. .+++|++..|
T Consensus       333 Fec~~sg~~~~v~TGsy~n~frvf~~~~g  361 (433)
T KOG1354|consen  333 FECSWSGNDSYVMTGSYNNVFRVFNLARG  361 (433)
T ss_pred             eEEEEcCCcceEecccccceEEEecCCCC
Confidence            457899999999999955 9999997655

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.18  E-value=4.1e-09  Score=114.41  Aligned_cols=270  Identities=18%  Similarity=0.195  Sum_probs=187.6

Q ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCC--------------
Q 047260          506 RNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDK--------------  571 (784)
Q Consensus       506 H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg--------------  571 (784)
                      -.-++..++|||.|.+|++....+ |.+|+-..+..+..+. | ..|..+.|+|.++||.+=+...              
T Consensus        31 ~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~  107 (561)
T COG5354          31 ENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSK  107 (561)
T ss_pred             cCcchhheeecCcchheehhhccc-eEEccccchhheeeee-c-CCceecccCcccceeeeeccCCccChhhccCCcccc
Confidence            445688999999999999877666 9999988777655553 3 4689999999999999865433              


Q ss_pred             -eEEEEcCCCCcceeeeccCCCCC--eE-EEEEcCCCCcEEEEEeCCCeEEEEeCCCC-e--eEEeec-CCeeEEEEecC
Q 047260          572 -SVRLWDAANPNFCSQAYTGHSSP--IM-SLDFHPKKTDLFCFCDNDNEIQYWSINPF-L--CTHITK-GGTAQVRFQPR  643 (784)
Q Consensus       572 -~I~IWdl~~~~~~~~~~~~h~~~--V~-sl~~sp~~~~ll~sgs~dg~I~iwDl~~~-~--~~~~~~-~~v~~v~fsp~  643 (784)
                       .+.|||+.++. ++..+.....+  .. -+.|+-++.+.+-.  ....++|+++... .  ....++ .++....|+|.
T Consensus       108 n~~~vwd~~sg~-iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv--v~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~  184 (561)
T COG5354         108 NNVFVWDIASGM-IVFSFNGISQPYLGWPVLKFSIDDKYVARV--VGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPE  184 (561)
T ss_pred             CceeEEeccCce-eEeeccccCCcccccceeeeeecchhhhhh--ccCeEEEEecCCccccCchhhccccceeeEEecCC
Confidence             48999999876 55666655544  44 56777776533322  3567889986321 1  112222 67788889987


Q ss_pred             CCE--EEEE-----ECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe------------CCeEEEEeCCC
Q 047260          644 IGQ--LLAA-----ASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVS------------QNLVKVWSMAS  704 (784)
Q Consensus       644 ~~~--Ll~~-----s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgs------------dd~I~IwDl~t  704 (784)
                      +++  |+.-     ..++.++||.+..+..+..-.-....-..+.|.+.|++|++--            +..++|+++..
T Consensus       185 ~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e  264 (561)
T COG5354         185 GNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE  264 (561)
T ss_pred             CCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecc
Confidence            543  3332     2368899999987766554333333345688999998876532            23688898885


Q ss_pred             CceEEEeccCCCceEEEEEecCCCEEEEEEC--CCeEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEECC---Cc
Q 047260          705 GECIQELSSNGNQFHSCVFHPSYSTLLVVGG--ISSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHD---SS  779 (784)
Q Consensus       705 ~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~--dg~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs~D---G~  779 (784)
                      ..+.-.. ...++|...+|.|.++.++++++  +-.+.++|++.+  +.+......=+.+.|+|.+++++.++-|   |.
T Consensus       265 ~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gn  341 (561)
T COG5354         265 RSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGN  341 (561)
T ss_pred             cccceec-cccccceeeeecccCCceeEEecccccceeecccccc--eEEecCCcccccccccCcccEEEEecCCccccc
Confidence            4433333 55789999999999988877774  568999999887  4444455555677888888888887765   55


Q ss_pred             EEEeC
Q 047260          780 VKLWK  784 (784)
Q Consensus       780 V~IWd  784 (784)
                      |-|||
T Consensus       342 i~i~~  346 (561)
T COG5354         342 IEIFD  346 (561)
T ss_pred             eEEec
Confidence            66665

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.16  E-value=2.2e-10  Score=128.06  Aligned_cols=277  Identities=17%  Similarity=0.322  Sum_probs=196.0

Q ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEECCC-CceeeecCCCC--CCeEEEEEccCC--CEEEEEeCCCeEEEEcCCC
Q 047260          506 RNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDT-LQTESTPEDHK--SVVTDVRFRPNS--SQLATASVDKSVRLWDAAN  580 (784)
Q Consensus       506 H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t-~~~~~~l~~h~--~~It~i~fspdg--~~Latgs~Dg~I~IWdl~~  580 (784)
                      -.+++..+.++|.|+-+|.++.-| +.+.|++. +...+-+ .|.  -.|-++.|++..  .+-++......-.||++..
T Consensus        23 v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l-~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~  100 (1081)
T KOG0309|consen   23 VDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWL-HHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAK  100 (1081)
T ss_pred             ecCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceee-eccCcchhcceecccCCCCceeEEecCcchhhhhhhhc
Confidence            356788899999999999998887 66677764 3433333 233  346778888733  3444444455677898764


Q ss_pred             C--cceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCee----EEeecCCeeEEEEecCCCEEEEEECCC
Q 047260          581 P--NFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLC----THITKGGTAQVRFQPRIGQLLAAASDK  654 (784)
Q Consensus       581 ~--~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~----~~~~~~~v~~v~fsp~~~~Ll~~s~Dg  654 (784)
                      .  ..+...+.+|...|+.+.|+|..+.++++|+.|-.+..||+++...    ..........|+|+-....+++.+..+
T Consensus       101 ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~  180 (1081)
T KOG0309|consen  101 SSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGN  180 (1081)
T ss_pred             CCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCC
Confidence            3  3355667799999999999999999999999999999999986432    233346778899999888999999999


Q ss_pred             cEEEEECCCC-eEEEEEeCCCCCEEEEEEcC--CCCEEEEEeCCeEEEEeCCCCceE-EEeccCCCceEEEEEecCCCEE
Q 047260          655 VVSIFDIETD-RQTHSLQGHAELVNYICWDT--NGDYLASVSQNLVKVWSMASGECI-QELSSNGNQFHSCVFHPSYSTL  730 (784)
Q Consensus       655 ~I~IwDl~t~-~~i~~l~~h~~~V~sl~~sp--dg~~Lasgsdd~I~IwDl~t~~~i-~~l~~~~~~I~sl~fspdg~~L  730 (784)
                      .|.+||++.+ .++..+++|...|+.+.|..  .+.++.+..|++|+.||....... ........+|..-.+.|-|.-.
T Consensus       181 ~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~  260 (1081)
T KOG0309|consen  181 DIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGY  260 (1081)
T ss_pred             ceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCcee
Confidence            9999999987 67888999999999999875  344455555779999998754321 1122334566777777766533


Q ss_pred             EEEE--CCCeEEEE---------ECCCCc-e-EEecccCCceEEEEEeCCC----------CEEEEEECCCcEEEeC
Q 047260          731 LVVG--GISSLELW---------NMAENK-S-MTIAAHENIISALAQSPVT----------GMVASASHDSSVKLWK  784 (784)
Q Consensus       731 ~s~s--~dg~I~Iw---------dl~~~~-~-~~~~~h~~~V~slafspdg----------~~LaSgs~DG~V~IWd  784 (784)
                      ++--  ++..+.++         +..++. . .++.+|.+.|...-|-..+          -.|+|-+.|..+++|-
T Consensus       261 ~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWp  337 (1081)
T KOG0309|consen  261 CIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWP  337 (1081)
T ss_pred             EeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeee
Confidence            3222  22244444         333332 2 2788999988777665422          2799999999999993

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.16  E-value=3.1e-09  Score=117.49  Aligned_cols=186  Identities=17%  Similarity=0.285  Sum_probs=149.6

Q ss_pred             cCCCEEEEEeCCCeEEEEcCCCCcceeeecc---CCCCCeEEEEEc------C-------------CCCcEEEEEeCCCe
Q 047260          559 PNSSQLATASVDKSVRLWDAANPNFCSQAYT---GHSSPIMSLDFH------P-------------KKTDLFCFCDNDNE  616 (784)
Q Consensus       559 pdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~---~h~~~V~sl~~s------p-------------~~~~ll~sgs~dg~  616 (784)
                      |...++|....||.+||||...++ ....+.   .-.+..++..|.      |             .+..+++-|...|.
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~-~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~   81 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQ-LQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS   81 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCce-eeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence            456789999999999999998766 222222   123344455442      1             23457888889999


Q ss_pred             EEEEeCCCCeeEEeec-----CCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEE
Q 047260          617 IQYWSINPFLCTHITK-----GGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLAS  691 (784)
Q Consensus       617 I~iwDl~~~~~~~~~~-----~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Las  691 (784)
                      |.+|++..++....+.     +.+.++.++.+-..|.+++.|+.+..|+......++.+.+....+.+++.+|||..+++
T Consensus        82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~  161 (541)
T KOG4547|consen   82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLT  161 (541)
T ss_pred             EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEe
Confidence            9999999887765554     67888999999999999999999999999999999999999999999999999999987


Q ss_pred             EeCCeEEEEeCCCCceEEEeccCCCceEEEEEecC-----CCEEEEEEC-CCeEEEEECCC
Q 047260          692 VSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPS-----YSTLLVVGG-ISSLELWNMAE  746 (784)
Q Consensus       692 gsdd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspd-----g~~L~s~s~-dg~I~Iwdl~~  746 (784)
                      ++ ..|++||+++++.+.+|.+|.++|.++.|.-.     |.+++++.. +..+.+|-+..
T Consensus       162 as-~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  162 AS-RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             cc-ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            75 47999999999999999999999999999877     667666544 34577776554

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.14  E-value=8.4e-09  Score=112.75  Aligned_cols=278  Identities=15%  Similarity=0.207  Sum_probs=182.4

Q ss_pred             CcceeEEeEeecCCCceEEEEEcCCCCEEEEEeC-----------CCeEEEEECCCCceeeecCCC--CCCe-EEEEEcc
Q 047260          494 GFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGH-----------DRKVVLWNMDTLQTESTPEDH--KSVV-TDVRFRP  559 (784)
Q Consensus       494 ~~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~-----------Dg~I~IWd~~t~~~~~~l~~h--~~~I-t~i~fsp  559 (784)
                      +..|..+..|. |. .|.-+.|||+.+||+|-+.           ...++|||+.+|...+.+...  ...+ .-+.||.
T Consensus       238 G~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~  315 (698)
T KOG2314|consen  238 GESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSH  315 (698)
T ss_pred             CccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEecc
Confidence            34444444443 44 4889999999999999652           246999999999998888652  2223 3468999


Q ss_pred             CCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEe-C----CCeEEEEeCCCCeeEEeec--
Q 047260          560 NSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCD-N----DNEIQYWSINPFLCTHITK--  632 (784)
Q Consensus       560 dg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs-~----dg~I~iwDl~~~~~~~~~~--  632 (784)
                      |++++|.-.. .+|.||+...-. ++....-....|....|+|.+. +|+--. .    -..+.+..+.+...++...  
T Consensus       316 DdKy~Arm~~-~sisIyEtpsf~-lld~Kslki~gIr~FswsP~~~-llAYwtpe~~~~parvtL~evPs~~~iRt~nlf  392 (698)
T KOG2314|consen  316 DDKYFARMTG-NSISIYETPSFM-LLDKKSLKISGIRDFSWSPTSN-LLAYWTPETNNIPARVTLMEVPSKREIRTKNLF  392 (698)
T ss_pred             CCceeEEecc-ceEEEEecCcee-eecccccCCccccCcccCCCcc-eEEEEcccccCCcceEEEEecCccceeeeccce
Confidence            9999988776 469999877532 2221122345688899999865 443221 1    1245555555544443322  


Q ss_pred             -CCeeEEEEecCCCEEEEEEC----------CCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC----eE
Q 047260          633 -GGTAQVRFQPRIGQLLAAAS----------DKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN----LV  697 (784)
Q Consensus       633 -~~v~~v~fsp~~~~Ll~~s~----------Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd----~I  697 (784)
                       -.-+.+.|...|.+|++-..          -..+.||.++..........-...|...+|.|.|..+++-+.+    ++
T Consensus       393 nVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tv  472 (698)
T KOG2314|consen  393 NVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTV  472 (698)
T ss_pred             eeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccce
Confidence             23344667778877765432          1235666666554333333366788999999999988776522    88


Q ss_pred             EEEeCCC-C---ceEEEeccCCCceEEEEEecCCCEEEEEEC---CCeEEEEECCCC--ceEEecccCCceEEEEEeCCC
Q 047260          698 KVWSMAS-G---ECIQELSSNGNQFHSCVFHPSYSTLLVVGG---ISSLELWNMAEN--KSMTIAAHENIISALAQSPVT  768 (784)
Q Consensus       698 ~IwDl~t-~---~~i~~l~~~~~~I~sl~fspdg~~L~s~s~---dg~I~Iwdl~~~--~~~~~~~h~~~V~slafspdg  768 (784)
                      .+|.+.+ .   +.+.++..  ...+.+.|+|.|.++++++-   .|.+.++|+.-.  +......|. ..+.+.|.|.|
T Consensus       473 sfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~-~at~veWDPtG  549 (698)
T KOG2314|consen  473 SFYAVETNIKKPSLVKELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHF-AATEVEWDPTG  549 (698)
T ss_pred             eEEEeecCCCchhhhhhhcc--cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCcccc-ccccceECCCC
Confidence            9998873 2   34444433  45688999999999887754   578999998853  333334444 36789999999


Q ss_pred             CEEEEEECCCc
Q 047260          769 GMVASASHDSS  779 (784)
Q Consensus       769 ~~LaSgs~DG~  779 (784)
                      +|+++++.-.+
T Consensus       550 RYvvT~ss~wr  560 (698)
T KOG2314|consen  550 RYVVTSSSSWR  560 (698)
T ss_pred             CEEEEeeehhh
Confidence            99999986443

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.12  E-value=1.7e-08  Score=110.40  Aligned_cols=269  Identities=14%  Similarity=0.258  Sum_probs=185.6

Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeC-----------CCeEEEEcC
Q 047260          510 VTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASV-----------DKSVRLWDA  578 (784)
Q Consensus       510 V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~-----------Dg~I~IWdl  578 (784)
                      =+-+.|||-|.||+|-..-| |.+|--++...+..+ .|. .|.-+.|||..+||+|-+.           ...++|||+
T Consensus       213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF-~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI  289 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRF-YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI  289 (698)
T ss_pred             eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhc-cCC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence            35688999999999987777 999988877777777 354 4888999999999999653           257999999


Q ss_pred             CCCcceeeeccC--CCC-CeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEee---cCCeeEEEEecCCCEEEEEEC
Q 047260          579 ANPNFCSQAYTG--HSS-PIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHIT---KGGTAQVRFQPRIGQLLAAAS  652 (784)
Q Consensus       579 ~~~~~~~~~~~~--h~~-~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~---~~~v~~v~fsp~~~~Ll~~s~  652 (784)
                      .++. ..+.+..  ... .-.-+.|+.|+.++...  ....|.||+..+...+...   -.+|....|+|.+..|+.-..
T Consensus       290 ~tG~-lkrsF~~~~~~~~~WP~frWS~DdKy~Arm--~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtp  366 (698)
T KOG2314|consen  290 ATGL-LKRSFPVIKSPYLKWPIFRWSHDDKYFARM--TGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTP  366 (698)
T ss_pred             cccc-hhcceeccCCCccccceEEeccCCceeEEe--ccceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcc
Confidence            9987 3443332  112 22346788888744333  3478999998875444322   267788899999887776543


Q ss_pred             -----CCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-----------eEEEEeCCCCceEEEeccCCC
Q 047260          653 -----DKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-----------LVKVWSMASGECIQELSSNGN  716 (784)
Q Consensus       653 -----Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-----------~I~IwDl~t~~~i~~l~~~~~  716 (784)
                           -..+.+..+.+++.+++-.-+.-.-..+-|-.+|.||+.--+.           .+.|+.++.....-....-..
T Consensus       367 e~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke  446 (698)
T KOG2314|consen  367 ETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKE  446 (698)
T ss_pred             cccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecch
Confidence                 2467788888887777665555555567788899999875432           355666655433222223346


Q ss_pred             ceEEEEEecCCCEEEEEECC---CeEEEEECCC-CceEEec--ccCCceEEEEEeCCCCEEEEEE---CCCcEEEeC
Q 047260          717 QFHSCVFHPSYSTLLVVGGI---SSLELWNMAE-NKSMTIA--AHENIISALAQSPVTGMVASAS---HDSSVKLWK  784 (784)
Q Consensus       717 ~I~sl~fspdg~~L~s~s~d---g~I~Iwdl~~-~~~~~~~--~h~~~V~slafspdg~~LaSgs---~DG~V~IWd  784 (784)
                      .|...+|-|.|..+++.+..   .++.+|.+.+ .....+.  -.....+.+.|+|.|++++.+.   ..|.+.++|
T Consensus       447 ~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D  523 (698)
T KOG2314|consen  447 SVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYD  523 (698)
T ss_pred             heeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEe
Confidence            78899999999988877665   4799998874 2222111  1224578899999999888764   456666664

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.11  E-value=2.9e-08  Score=110.88  Aligned_cols=251  Identities=14%  Similarity=0.070  Sum_probs=159.8

Q ss_pred             CCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEE
Q 047260          519 GKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSL  598 (784)
Q Consensus       519 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl  598 (784)
                      +..+++++.+|.|..+|..+++.+............+..  ++..+++++.++.|..+|..+++..-....  ...+.+.
T Consensus        65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~  140 (377)
T TIGR03300        65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKL--SSEVLSP  140 (377)
T ss_pred             CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeecc--CceeecC
Confidence            567888889999999999999988776544332222322  467888889999999999988874332221  1222221


Q ss_pred             EEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCCee--------EEEEecCCCEEEEEECCCcEEEEECCCCeEEEEE
Q 047260          599 DFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTA--------QVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSL  670 (784)
Q Consensus       599 ~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v~--------~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l  670 (784)
                      ... .+. .++.+..++.|+.||.++++.+..+.....        ...+  .++.++++..++.|..+|.++++.+...
T Consensus       141 p~v-~~~-~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~  216 (377)
T TIGR03300       141 PLV-ANG-LVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQ  216 (377)
T ss_pred             CEE-ECC-EEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeee
Confidence            111 123 455667799999999998887665543211        1111  2356778888899999999999876554


Q ss_pred             eCCC----CC------E-EEEEEcCCCCEEEEEeCCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeE
Q 047260          671 QGHA----EL------V-NYICWDTNGDYLASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSL  739 (784)
Q Consensus       671 ~~h~----~~------V-~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I  739 (784)
                      ....    ..      + ....+ .++.++++..++.++.||..+++.+......  ......  ..+..+++++.+|.|
T Consensus       217 ~~~~~~g~~~~~~~~~~~~~p~~-~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~--~~~~p~--~~~~~vyv~~~~G~l  291 (377)
T TIGR03300       217 RVALPKGRTELERLVDVDGDPVV-DGGQVYAVSYQGRVAALDLRSGRVLWKRDAS--SYQGPA--VDDNRLYVTDADGVV  291 (377)
T ss_pred             ccccCCCCCchhhhhccCCccEE-ECCEEEEEEcCCEEEEEECCCCcEEEeeccC--CccCce--EeCCEEEEECCCCeE
Confidence            3110    00      0 01111 1344444444669999999999887766522  112222  245678888999999


Q ss_pred             EEEECCCCceEEec-ccC-CceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          740 ELWNMAENKSMTIA-AHE-NIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       740 ~Iwdl~~~~~~~~~-~h~-~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      +.+|..+++.+... ... ..+.....  .+..|++++.||.|++||
T Consensus       292 ~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d  336 (377)
T TIGR03300       292 VALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLS  336 (377)
T ss_pred             EEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEE
Confidence            99999998876222 211 12222222  366888899999998875

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.10  E-value=1.2e-07  Score=102.21  Aligned_cols=273  Identities=13%  Similarity=0.107  Sum_probs=185.1

Q ss_pred             CCcceeEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECC-CCceeeecCCCCC--CeEEEEEccCCCEEEEEeC
Q 047260          493 KGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMD-TLQTESTPEDHKS--VVTDVRFRPNSSQLATASV  569 (784)
Q Consensus       493 ~~~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~-t~~~~~~l~~h~~--~It~i~fspdg~~Latgs~  569 (784)
                      .+..|.++-.+.+|-+.-.   +- .++..+....||.=.||.++ .++.+   +.|+.  .-.+-..+.||+.|+.. .
T Consensus       214 ~g~tFeK~vdl~~~vS~Pm---IV-~~RvYFlsD~eG~GnlYSvdldGkDl---rrHTnFtdYY~R~~nsDGkrIvFq-~  285 (668)
T COG4946         214 GGKTFEKFVDLDGNVSSPM---IV-GERVYFLSDHEGVGNLYSVDLDGKDL---RRHTNFTDYYPRNANSDGKRIVFQ-N  285 (668)
T ss_pred             CCcceeeeeecCCCcCCce---EE-cceEEEEecccCccceEEeccCCchh---hhcCCchhccccccCCCCcEEEEe-c
Confidence            3447777777777644322   22 23333445667665566544 23332   22332  12333446688888775 4


Q ss_pred             CCeEEEEcCCCCcceeeecc-----CCC-----CCeEEEE-EcCCCCcEEEEEeCCCeEEEEeCCCCeeEEe-ecCCeeE
Q 047260          570 DKSVRLWDAANPNFCSQAYT-----GHS-----SPIMSLD-FHPKKTDLFCFCDNDNEIQYWSINPFLCTHI-TKGGTAQ  637 (784)
Q Consensus       570 Dg~I~IWdl~~~~~~~~~~~-----~h~-----~~V~sl~-~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~-~~~~v~~  637 (784)
                      .|.|.+||.++.......+.     ...     .+..-+. |++-...+++..+ .|...+.+....-.+.. .++.|.-
T Consensus       286 ~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~~~~iqv~~~~~VrY  364 (668)
T COG4946         286 AGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWDGYSIQVGKKGGVRY  364 (668)
T ss_pred             CCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCCCeeEEcCCCCceEE
Confidence            58899999987653221111     000     1111111 4444444666665 56666666655444443 3466777


Q ss_pred             EEEecCCCEEEEEECCC-cEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCC
Q 047260          638 VRFQPRIGQLLAAASDK-VVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNG  715 (784)
Q Consensus       638 v~fsp~~~~Ll~~s~Dg-~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~  715 (784)
                      ..+..+.+.++.|..|| .|-|||.++++. ..+...-+.|.++..+++|++++++.+. .|.++|+.++.....-....
T Consensus       365 ~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~  443 (668)
T COG4946         365 RRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEY  443 (668)
T ss_pred             EEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEeccccc
Confidence            77877888899999988 899999997764 4455677899999999999999999888 99999999998766556667


Q ss_pred             CceEEEEEecCCCEEEEEECCC----eEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEE
Q 047260          716 NQFHSCVFHPSYSTLLVVGGIS----SLELWNMAENKSMTIAAHENIISALAQSPVTGMVASAS  775 (784)
Q Consensus       716 ~~I~sl~fspdg~~L~s~s~dg----~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs  775 (784)
                      +-|+.+.|||++++|+.+--+|    .|+++|+.+++........+.=.+-+|.||+++|..-+
T Consensus       444 ~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         444 GLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             ceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence            8899999999999999998876    69999999999887666555556778999999877654

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.10  E-value=9.5e-08  Score=119.03  Aligned_cols=236  Identities=12%  Similarity=0.140  Sum_probs=160.8

Q ss_pred             EEEEEcCC-CCEEEEEeCCCeEEEEECCCCceeeecCC--------------CCCCeEEEEEccCCCEEEEEeC-CCeEE
Q 047260          511 TCCHFSSD-GKLLASSGHDRKVVLWNMDTLQTESTPED--------------HKSVVTDVRFRPNSSQLATASV-DKSVR  574 (784)
Q Consensus       511 ~~l~fspd-g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~--------------h~~~It~i~fspdg~~Latgs~-Dg~I~  574 (784)
                      ..++++++ +.++++-..++.|++||... ..+..+..              +-.....|++++++..|+++.. .+.|+
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir  649 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR  649 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence            45788874 55666667788899999864 44433322              1123578999998887666544 56799


Q ss_pred             EEcCCCCcceeeeccC--C---------------CCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec-----
Q 047260          575 LWDAANPNFCSQAYTG--H---------------SSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK-----  632 (784)
Q Consensus       575 IWdl~~~~~~~~~~~~--h---------------~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~-----  632 (784)
                      ++|+.++.  +.++.+  .               -.....++|+|++..++++...++.|++||...........     
T Consensus       650 ~id~~~~~--V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~  727 (1057)
T PLN02919        650 EIDFVNET--VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER  727 (1057)
T ss_pred             EEecCCCE--EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence            99987654  222211  0               12346899999777788888889999999997654432110     


Q ss_pred             ------------CCeeEEEEecCCCEEEEEEC-CCcEEEEECCCCeEEEEEeC-------------C--------CCCEE
Q 047260          633 ------------GGTAQVRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHSLQG-------------H--------AELVN  678 (784)
Q Consensus       633 ------------~~v~~v~fsp~~~~Ll~~s~-Dg~I~IwDl~t~~~i~~l~~-------------h--------~~~V~  678 (784)
                                  .....++++|+++.|+++.. ++.|++||+.++.......+             .        -....
T Consensus       728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~  807 (1057)
T PLN02919        728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL  807 (1057)
T ss_pred             cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence                        12356889999987776665 69999999987653211100             0        01235


Q ss_pred             EEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEecc-------------CCCceEEEEEecCCCEEEEEECCCeEEEEEC
Q 047260          679 YICWDTNGDYLASVSQN-LVKVWSMASGECIQELSS-------------NGNQFHSCVFHPSYSTLLVVGGISSLELWNM  744 (784)
Q Consensus       679 sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~-------------~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl  744 (784)
                      .++++++|.++++...+ .|++||..++........             .-.....++++++|+.+++-+.++.|++||+
T Consensus       808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~  887 (1057)
T PLN02919        808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDL  887 (1057)
T ss_pred             eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence            78999999877776655 999999988765533211             1124678999999997777778899999999


Q ss_pred             CCCce
Q 047260          745 AENKS  749 (784)
Q Consensus       745 ~~~~~  749 (784)
                      .+++.
T Consensus       888 ~~~~~  892 (1057)
T PLN02919        888 NKGEA  892 (1057)
T ss_pred             CCCcc
Confidence            88764

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.10  E-value=2.8e-09  Score=108.71  Aligned_cols=197  Identities=20%  Similarity=0.230  Sum_probs=147.5

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceee--ecCCCCCCeEEEEEcc-CCCEEEEEeCCCeEEEEcCCCCccee
Q 047260          509 KVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTES--TPEDHKSVVTDVRFRP-NSSQLATASVDKSVRLWDAANPNFCS  585 (784)
Q Consensus       509 ~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~--~l~~h~~~It~i~fsp-dg~~Latgs~Dg~I~IWdl~~~~~~~  585 (784)
                      ...++.|++.+.-++++..+|.+.+-+........  ..+.|...++...|+. +.+++++|+.|+.+..||++.++..+
T Consensus       123 ~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i  202 (339)
T KOG0280|consen  123 EALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFI  202 (339)
T ss_pred             eeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCccee
Confidence            45688899999999999999999976666554444  7889999999999987 55789999999999999999544333


Q ss_pred             -eeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCC-CeeEEe--ecCCeeEEEEecCCC-EEEEEECCCcEEEEE
Q 047260          586 -QAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINP-FLCTHI--TKGGTAQVRFQPRIG-QLLAAASDKVVSIFD  660 (784)
Q Consensus       586 -~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~-~~~~~~--~~~~v~~v~fsp~~~-~Ll~~s~Dg~I~IwD  660 (784)
                       .....|...|.+|.-+|..+..+++|+.|..|++||.+. ++.+..  ..++|..+..+|... .+++++.-+-.+|.+
T Consensus       203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~  282 (339)
T KOG0280|consen  203 WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILD  282 (339)
T ss_pred             eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEE
Confidence             335678899999999999899999999999999999995 333332  338899999998654 345556556667776


Q ss_pred             CCCC--e---EEEEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEE-EEeCCCC
Q 047260          661 IETD--R---QTHSLQGHAELVNYICWDTNGDYLASVS--QNLVK-VWSMASG  705 (784)
Q Consensus       661 l~t~--~---~i~~l~~h~~~V~sl~~spdg~~Lasgs--dd~I~-IwDl~t~  705 (784)
                      ...+  +   .....+.|.+-+..-.|.....+|++|+  |+.++ +|-.-++
T Consensus       283 ~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~  335 (339)
T KOG0280|consen  283 SSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG  335 (339)
T ss_pred             ecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence            6554  2   3344456777777777766667788876  44544 6654443

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.06  E-value=1e-07  Score=118.85  Aligned_cols=230  Identities=10%  Similarity=0.071  Sum_probs=155.3

Q ss_pred             EEEEEccC-CCEEEEEeCCCeEEEEcCCCCcceeeecc-C------------CCCCeEEEEEcCCCCcEEEEEeCCCeEE
Q 047260          553 TDVRFRPN-SSQLATASVDKSVRLWDAANPNFCSQAYT-G------------HSSPIMSLDFHPKKTDLFCFCDNDNEIQ  618 (784)
Q Consensus       553 t~i~fspd-g~~Latgs~Dg~I~IWdl~~~~~~~~~~~-~------------h~~~V~sl~~sp~~~~ll~sgs~dg~I~  618 (784)
                      ..+++++. ++++++-+.++.|++||..... ....-. +            .-.....|++.+++..++++-..++.|+
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~-i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir  649 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNF-IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR  649 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCCCE-EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence            46788874 5666776778899999986432 221111 1            1123578999988776666666678899


Q ss_pred             EEeCCCCeeEEeec-------------------CCeeEEEEecCCCEEEEE-ECCCcEEEEECCCCeEEEEEeCC-----
Q 047260          619 YWSINPFLCTHITK-------------------GGTAQVRFQPRIGQLLAA-ASDKVVSIFDIETDRQTHSLQGH-----  673 (784)
Q Consensus       619 iwDl~~~~~~~~~~-------------------~~v~~v~fsp~~~~Ll~~-s~Dg~I~IwDl~t~~~i~~l~~h-----  673 (784)
                      ++|+.+........                   .....++++|+++.++++ ..++.|++||..++... .+.+.     
T Consensus       650 ~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~  728 (1057)
T PLN02919        650 EIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERN  728 (1057)
T ss_pred             EEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCcccc
Confidence            99987654432211                   123578999966655555 45799999999877543 22111     


Q ss_pred             ----------CCCEEEEEEcCCCCEEEEEe-C-CeEEEEeCCCCceEEEec-------------cC--------CCceEE
Q 047260          674 ----------AELVNYICWDTNGDYLASVS-Q-NLVKVWSMASGECIQELS-------------SN--------GNQFHS  720 (784)
Q Consensus       674 ----------~~~V~sl~~spdg~~Lasgs-d-d~I~IwDl~t~~~i~~l~-------------~~--------~~~I~s  720 (784)
                                -.....|+++|++..|+++. + +.|++||+.++.......             ..        -.....
T Consensus       729 ~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~G  808 (1057)
T PLN02919        729 LNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLG  808 (1057)
T ss_pred             CCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCce
Confidence                      12345699999998655554 3 499999998765321110             00        012368


Q ss_pred             EEEecCCCEEEEEECCCeEEEEECCCCceEEeccc--------------CCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          721 CVFHPSYSTLLVVGGISSLELWNMAENKSMTIAAH--------------ENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       721 l~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~~~h--------------~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      ++++++|..+++-..+++|++||..++....+.+.              -.....|+++++|+++++-+.+++|++||
T Consensus       809 vavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid  886 (1057)
T PLN02919        809 VLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLD  886 (1057)
T ss_pred             eeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEE
Confidence            89999998777777888999999998876654332              23578899999999888888899999996

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.04  E-value=5.4e-09  Score=108.62  Aligned_cols=242  Identities=13%  Similarity=0.239  Sum_probs=174.5

Q ss_pred             CceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCC-CcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeE
Q 047260          539 LQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAAN-PNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEI  617 (784)
Q Consensus       539 ~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~-~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I  617 (784)
                      ...+..+++|.+.|++...-|...-+++.+.|.++|||--++ +.....+......+++++.+.++.. .|+++-.+|.+
T Consensus        14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~-~L~vg~~ngtv   92 (404)
T KOG1409|consen   14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESR-RLYVGQDNGTV   92 (404)
T ss_pred             hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccce-EEEEEEecceE
Confidence            345567789999999999999888899999999999996443 4434444455678899999998765 67778889999


Q ss_pred             EEEeCCC----Cee---EEeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEE
Q 047260          618 QYWSINP----FLC---THITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLA  690 (784)
Q Consensus       618 ~iwDl~~----~~~---~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~La  690 (784)
                      .-+.+..    ...   ...+...+..+.|+-....+++.+.|..+.-.-.+.+..+..+.- ...-+++.+.-.  +..
T Consensus        93 tefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-~~~~t~~~~d~~--~~f  169 (404)
T KOG1409|consen   93 TEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF-ETPASALQFDAL--YAF  169 (404)
T ss_pred             EEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe-eccCCCCceeeE--EEE
Confidence            8887642    211   223346778888888888899999887776554444433221110 000111111111  333


Q ss_pred             EEe-CCeEEEE--eCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCce--EEecccCCceEEEEEe
Q 047260          691 SVS-QNLVKVW--SMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKS--MTIAAHENIISALAQS  765 (784)
Q Consensus       691 sgs-dd~I~Iw--Dl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~--~~~~~h~~~V~slafs  765 (784)
                      .|. .+.|.+.  +...-..+.++.+|...+.++.|.+....++++..|..|.+||+-.++-  ..+.+|...|..+...
T Consensus       170 vGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~  249 (404)
T KOG1409|consen  170 VGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYA  249 (404)
T ss_pred             ecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhh
Confidence            333 2233333  3344567889999999999999999999999999999999999876554  4788999999999999


Q ss_pred             CCCCEEEEEECCCcEEEeC
Q 047260          766 PVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       766 pdg~~LaSgs~DG~V~IWd  784 (784)
                      +.-+.+++++.||.|.+||
T Consensus       250 ~~t~~l~S~~edg~i~~w~  268 (404)
T KOG1409|consen  250 QHTRQLISCGEDGGIVVWN  268 (404)
T ss_pred             hhheeeeeccCCCeEEEEe
Confidence            9899999999999999996

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.02  E-value=1.4e-09  Score=131.47  Aligned_cols=195  Identities=17%  Similarity=0.317  Sum_probs=158.7

Q ss_pred             eecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecC-CCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCC
Q 047260          503 IRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPE-DHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANP  581 (784)
Q Consensus       503 l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~-~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~  581 (784)
                      ++.|-..|.++.-+|...+.+||+.||.|++|....+..+..++ .....|+.+.|+..|+.+..+..||.+.+|.+.. 
T Consensus      2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p- 2282 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASP- 2282 (2439)
T ss_pred             eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCC-
Confidence            45567789999999999999999999999999999888777765 2337899999999999999999999999999982 


Q ss_pred             cceeeeccCCCCCeEEEEEcCCCCcEEEEE---eCCCeEEEEeCCC---CeeE-EeecCCeeEEEEecCCCEEEEEECCC
Q 047260          582 NFCSQAYTGHSSPIMSLDFHPKKTDLFCFC---DNDNEIQYWSINP---FLCT-HITKGGTAQVRFQPRIGQLLAAASDK  654 (784)
Q Consensus       582 ~~~~~~~~~h~~~V~sl~~sp~~~~ll~sg---s~dg~I~iwDl~~---~~~~-~~~~~~v~~v~fsp~~~~Ll~~s~Dg  654 (784)
                      + .......|......+.|..   .++++.   +.++.+.+||..-   ..++ ..+.++++++++.|....|++|+.+|
T Consensus      2283 k-~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G 2358 (2439)
T KOG1064|consen 2283 K-PYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKG 2358 (2439)
T ss_pred             c-ceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcC
Confidence            3 5566678888888888875   245554   3578999999852   1222 45668899999999999999999999


Q ss_pred             cEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEeCCCCceEEEec
Q 047260          655 VVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVS-QNLVKVWSMASGECIQELS  712 (784)
Q Consensus       655 ~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgs-dd~I~IwDl~t~~~i~~l~  712 (784)
                      .|++||++..+.++.+..         ++ ...++++++ ++.|+||++.....++++.
T Consensus      2359 ~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2359 EVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred             cEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence            999999999888877764         44 556777776 6699999999877777665

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.02  E-value=5.6e-09  Score=106.87  Aligned_cols=235  Identities=17%  Similarity=0.327  Sum_probs=161.9

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----eeeecCCCC------------CCeEEEEEccCC--CEEEEE
Q 047260          507 NSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQ-----TESTPEDHK------------SVVTDVRFRPNS--SQLATA  567 (784)
Q Consensus       507 ~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~-----~~~~l~~h~------------~~It~i~fspdg--~~Latg  567 (784)
                      .+.|+++.|...|.||++|...|.|.+|.-+...     ....+.+|.            ..|..|.|..++  ..++..
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls  105 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS  105 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence            4569999999999999999999999999865422     222344443            458889998744  356667


Q ss_pred             eCCCeEEEEcCCCCcc-----------------------------------------eeeec-cCCCCCeEEEEEcCCCC
Q 047260          568 SVDKSVRLWDAANPNF-----------------------------------------CSQAY-TGHSSPIMSLDFHPKKT  605 (784)
Q Consensus       568 s~Dg~I~IWdl~~~~~-----------------------------------------~~~~~-~~h~~~V~sl~~sp~~~  605 (784)
                      +.|++|++|.+.....                                         ..+.+ ..|...|.+|.|+.+..
T Consensus       106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e  185 (460)
T COG5170         106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE  185 (460)
T ss_pred             cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence            7899999998864310                                         00111 35777788999998876


Q ss_pred             cEEEEEeCCCeEEEEeCCCC----eeEEee-------cCCeeEEEEecCCC-EEEEEECCCcEEEEECCCCeEE------
Q 047260          606 DLFCFCDNDNEIQYWSINPF----LCTHIT-------KGGTAQVRFQPRIG-QLLAAASDKVVSIFDIETDRQT------  667 (784)
Q Consensus       606 ~ll~sgs~dg~I~iwDl~~~----~~~~~~-------~~~v~~v~fsp~~~-~Ll~~s~Dg~I~IwDl~t~~~i------  667 (784)
                      .+ + +..|-.|.+|+++-.    ..+...       ..-+++..|+|... .+...++.|.|++-|++.....      
T Consensus       186 t~-l-SaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl  263 (460)
T COG5170         186 TL-L-SADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL  263 (460)
T ss_pred             ee-e-eccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence            33 3 345889999998632    222211       13456778888754 4556677899999999843211      


Q ss_pred             E----------EEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCC-ceEEEeccCC------------Cce---EEE
Q 047260          668 H----------SLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASG-ECIQELSSNG------------NQF---HSC  721 (784)
Q Consensus       668 ~----------~l~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~-~~i~~l~~~~------------~~I---~sl  721 (784)
                      .          -+.+-...|..+.|+++|+|+++-+-.+|+|||.+.. .++.++.-|.            ..|   ..|
T Consensus       264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFei  343 (460)
T COG5170         264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEI  343 (460)
T ss_pred             hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEE
Confidence            0          1112334678899999999999888779999999864 5777775442            222   457


Q ss_pred             EEecCCCEEEEEECCCeEEEEE
Q 047260          722 VFHPSYSTLLVVGGISSLELWN  743 (784)
Q Consensus       722 ~fspdg~~L~s~s~dg~I~Iwd  743 (784)
                      .|+.+.+.+++|+.....-||-
T Consensus       344 sfSgd~~~v~sgsy~NNfgiyp  365 (460)
T COG5170         344 SFSGDDKHVLSGSYSNNFGIYP  365 (460)
T ss_pred             EecCCcccccccccccceeeec
Confidence            7888888888888776665554

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.02  E-value=2.2e-08  Score=102.23  Aligned_cols=237  Identities=13%  Similarity=0.137  Sum_probs=163.1

Q ss_pred             CCceEEEEEcC---CCC-EEEEEeCCCeEEEEECCCCceeeecCCCC------CCeEEEEEccCCCEEEEEeCCCeEEEE
Q 047260          507 NSKVTCCHFSS---DGK-LLASSGHDRKVVLWNMDTLQTESTPEDHK------SVVTDVRFRPNSSQLATASVDKSVRLW  576 (784)
Q Consensus       507 ~~~V~~l~fsp---dg~-~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~------~~It~i~fspdg~~Latgs~Dg~I~IW  576 (784)
                      +..+..+.|.-   +|. .|+-+..+|.|.+|..........+++-.      ....++.|++.+..++++..+|.+.+-
T Consensus        69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v  148 (339)
T KOG0280|consen   69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGV  148 (339)
T ss_pred             ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEE
Confidence            44566677754   555 56677888999999876544444443221      134578899989999999999999965


Q ss_pred             cCCCCc-ceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCC-CCeeE----EeecCCeeEEEEec-CCCEEEE
Q 047260          577 DAANPN-FCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSIN-PFLCT----HITKGGTAQVRFQP-RIGQLLA  649 (784)
Q Consensus       577 dl~~~~-~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~-~~~~~----~~~~~~v~~v~fsp-~~~~Ll~  649 (784)
                      +..... ......+.|.-+++...|+...++++.+|++|+.+..||++ +.+.+    ..+..+|.+|.-+| ...++++
T Consensus       149 ~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~T  228 (339)
T KOG0280|consen  149 YETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIAT  228 (339)
T ss_pred             ecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEE
Confidence            554433 12346789999999999999999999999999999999999 33333    44557788887765 4567889


Q ss_pred             EECCCcEEEEECCC-CeEEEEEeCCCCCEEEEEEcCC--CCEEEEEeCCeEEEEeCCCC--c---eEEEeccCCCceEEE
Q 047260          650 AASDKVVSIFDIET-DRQTHSLQGHAELVNYICWDTN--GDYLASVSQNLVKVWSMASG--E---CIQELSSNGNQFHSC  721 (784)
Q Consensus       650 ~s~Dg~I~IwDl~t-~~~i~~l~~h~~~V~sl~~spd--g~~Lasgsdd~I~IwDl~t~--~---~i~~l~~~~~~I~sl  721 (784)
                      |+.|..|++||.++ ++++..-. -.+.|..++++|.  +++|+++-.+-.+|.+...+  +   .....+.|.+-++.-
T Consensus       229 GsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~  307 (339)
T KOG0280|consen  229 GSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGG  307 (339)
T ss_pred             eccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeecc
Confidence            99999999999995 56654433 4578999999984  34555555555666666543  2   233445565555555


Q ss_pred             EEecCCCEEEEEEC-CCeEE-EEEC
Q 047260          722 VFHPSYSTLLVVGG-ISSLE-LWNM  744 (784)
Q Consensus       722 ~fspdg~~L~s~s~-dg~I~-Iwdl  744 (784)
                      .|......|++++. |+.++ +|-.
T Consensus       308 DWd~~~~~lATCsFYDk~~~~~Wl~  332 (339)
T KOG0280|consen  308 DWDSKDSFLATCSFYDKKIRQLWLH  332 (339)
T ss_pred             ccccccceeeeeeccccceeeeeee
Confidence            66444456777653 44434 6643

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.01  E-value=4.4e-09  Score=122.61  Aligned_cols=147  Identities=16%  Similarity=0.252  Sum_probs=124.9

Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCC
Q 047260          513 CHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHS  592 (784)
Q Consensus       513 l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~  592 (784)
                      +-++++.-++++|+.-+.|.+|+....+....+.+|.+.|.++.|+.||++++++|+|.++|+|++++.+.......+|+
T Consensus       139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHs  218 (967)
T KOG0974|consen  139 IGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHS  218 (967)
T ss_pred             EeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccccccc
Confidence            34566777899999999999999874444446789999999999999999999999999999999999886666778999


Q ss_pred             CCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEee----cCCeeEEEEecCCCEEEEEECCCcEEEEECCC
Q 047260          593 SPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHIT----KGGTAQVRFQPRIGQLLAAASDKVVSIFDIET  663 (784)
Q Consensus       593 ~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~----~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t  663 (784)
                      ..|..++|+|+   .+++++.|.++++|+.+..... .+    ...+..+.+.+....+++++.|+.+++||+..
T Consensus       219 aRvw~~~~~~n---~i~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  219 ARVWACCFLPN---RIITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             ceeEEEEeccc---eeEEeccceEEEEEecccceeh-hhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            99999999988   7899999999999977643332 22    26788899999989999999999999999754

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.01  E-value=2.7e-07  Score=104.18  Aligned_cols=225  Identities=11%  Similarity=0.083  Sum_probs=147.8

Q ss_pred             CeEEEEECCCCceeeecCCCCCCeEEEEEccCCCE-EEEEeCC---CeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCC
Q 047260          529 RKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQ-LATASVD---KSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKK  604 (784)
Q Consensus       529 g~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~-Latgs~D---g~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~  604 (784)
                      ..|.+-|.+... ...+.... .+....|+|||+. ++..+.+   ..|.++|+.+++.  ..+....+.+....|+||+
T Consensus       169 ~~l~~~d~dg~~-~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~--~~lt~~~g~~~~~~~SPDG  244 (419)
T PRK04043        169 SNIVLADYTLTY-QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK--EKIASSQGMLVVSDVSKDG  244 (419)
T ss_pred             ceEEEECCCCCc-eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE--EEEecCCCcEEeeEECCCC
Confidence            345555555333 33333333 7788999999984 6654444   4688899987652  2222345556778899999


Q ss_pred             CcEEEEEeCC--CeEEEEeCCCCeeEEeecCC--eeEEEEecCCCEEEEEEC-C--CcEEEEECCCCeEEEEEeCCCCCE
Q 047260          605 TDLFCFCDND--NEIQYWSINPFLCTHITKGG--TAQVRFQPRIGQLLAAAS-D--KVVSIFDIETDRQTHSLQGHAELV  677 (784)
Q Consensus       605 ~~ll~sgs~d--g~I~iwDl~~~~~~~~~~~~--v~~v~fsp~~~~Ll~~s~-D--g~I~IwDl~t~~~i~~l~~h~~~V  677 (784)
                      ..++++.+.+  ..|+++|+............  .....|+|+|+.|+..+. .  ..|+++|+.+++....... ... 
T Consensus       245 ~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~-  322 (419)
T PRK04043        245 SKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN-  322 (419)
T ss_pred             CEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc-
Confidence            9888777655  46888888776654443322  345679999998887775 2  3688889988766443321 111 


Q ss_pred             EEEEEcCCCCEEEEEeC--------C--eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCC---eEEEEEC
Q 047260          678 NYICWDTNGDYLASVSQ--------N--LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGIS---SLELWNM  744 (784)
Q Consensus       678 ~sl~~spdg~~Lasgsd--------d--~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg---~I~Iwdl  744 (784)
                       ...|+|||++|+....        +  .|.+.|+.++.. ..+... .......|+|||+.|+..+.++   .|.++++
T Consensus       323 -~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l  399 (419)
T PRK04043        323 -NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRL  399 (419)
T ss_pred             -CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEec
Confidence             2489999998877652        2  688889888764 344433 2334688999999988877653   4778888


Q ss_pred             CCCceEEecccCCceEEE
Q 047260          745 AENKSMTIAAHENIISAL  762 (784)
Q Consensus       745 ~~~~~~~~~~h~~~V~sl  762 (784)
                      .......+....+.|...
T Consensus       400 ~g~~~~~l~~~~g~~~~p  417 (419)
T PRK04043        400 NYNKSFLFPLKVGKIQSI  417 (419)
T ss_pred             CCCeeEEeecCCCccCCC
Confidence            877666665544544443

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.00  E-value=2.9e-08  Score=110.95  Aligned_cols=266  Identities=13%  Similarity=0.168  Sum_probs=184.7

Q ss_pred             CCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCCCEEEEEeCCC
Q 047260          450 IDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDR  529 (784)
Q Consensus       450 ~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg  529 (784)
                      ...++++|..||-+++.....+.+.-..           .......++..-.++.||++.|.-+.|+.+...|-|...+|
T Consensus        25 e~gyIAcgG~dGlLKVlKl~t~t~d~~~-----------~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G   93 (1189)
T KOG2041|consen   25 ESGYIACGGADGLLKVLKLGTDTTDLNK-----------SGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG   93 (1189)
T ss_pred             cCCeEEeccccceeEEEEccccCCcccc-----------cccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence            3456778888998888866433211111           11112234455577899999999999999989999999999


Q ss_pred             eEEEEECCCCceeeecC--CCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcE
Q 047260          530 KVVLWNMDTLQTESTPE--DHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDL  607 (784)
Q Consensus       530 ~I~IWd~~t~~~~~~l~--~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~l  607 (784)
                      .|.||-+-.+.-.....  ..++.|.+++|+.+|..|...-.||.|.|=.++..+..-+.+.+  .....+.|++|.. .
T Consensus        94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~D~~-~  170 (1189)
T KOG2041|consen   94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSEDLE-Q  170 (1189)
T ss_pred             eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--heccceeecccHH-H
Confidence            99999998776544432  34567899999999999999999999998888765543344433  2245788999877 4


Q ss_pred             EEEEeCCCeEEEEeCCCC-------eeEEe-------ecCCeeEEEE--------ecCCCEEEEEECCCcEEEEECCCCe
Q 047260          608 FCFCDNDNEIQYWSINPF-------LCTHI-------TKGGTAQVRF--------QPRIGQLLAAASDKVVSIFDIETDR  665 (784)
Q Consensus       608 l~sgs~dg~I~iwDl~~~-------~~~~~-------~~~~v~~v~f--------sp~~~~Ll~~s~Dg~I~IwDl~t~~  665 (784)
                      +..+-.+|.+.+||....       .|...       +...+..+.|        -|+...|+++...|.+.|..-++..
T Consensus       171 ~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~  250 (1189)
T KOG2041|consen  171 ALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDP  250 (1189)
T ss_pred             HHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCC
Confidence            445666899999997631       11111       1112333433        3577889999999999988766554


Q ss_pred             EEEEEeCCCCCEEEEEEcCCCCEEEEEeCC----------eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEE
Q 047260          666 QTHSLQGHAELVNYICWDTNGDYLASVSQN----------LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLL  731 (784)
Q Consensus       666 ~i~~l~~h~~~V~sl~~spdg~~Lasgsdd----------~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~  731 (784)
                      ....+. ..-.|..+.|+++|.+|++++.+          .|.+|. .-|+.+.+++.++..|+.++|-..|-.++
T Consensus       251 ~Pvv~d-tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~gLriA  324 (1189)
T KOG2041|consen  251 EPVVVD-TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGTGLRIA  324 (1189)
T ss_pred             CCeEEe-cccEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCCceEEE
Confidence            333333 23578889999999999998722          344443 45778888888888899988876664443

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.99  E-value=4.9e-07  Score=110.82  Aligned_cols=277  Identities=13%  Similarity=0.201  Sum_probs=185.4

Q ss_pred             cCCCceEEEEEcCCCCEEEEEeCCCeEEEE----ECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCC-
Q 047260          505 SRNSKVTCCHFSSDGKLLASSGHDRKVVLW----NMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAA-  579 (784)
Q Consensus       505 ~H~~~V~~l~fspdg~~Lasgs~Dg~I~IW----d~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~-  579 (784)
                      ...+.|.++.|-++..-|+.+..+|.|.++    +..+.. +.....-...|.+++|+||+..|+.++.+++|.+-+-. 
T Consensus        73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~f  151 (928)
T PF04762_consen   73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDF  151 (928)
T ss_pred             CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccc
Confidence            356789999999999999999999999999    544332 23333456789999999999999999999888775321 


Q ss_pred             -----------C-C--cc-------eeeecc------------------------CCCCCeEEEEEcCCCCcEEEEEe--
Q 047260          580 -----------N-P--NF-------CSQAYT------------------------GHSSPIMSLDFHPKKTDLFCFCD--  612 (784)
Q Consensus       580 -----------~-~--~~-------~~~~~~------------------------~h~~~V~sl~~sp~~~~ll~sgs--  612 (784)
                                 . +  +.       ....|.                        .+...-..|+|-.||.++.++.-  
T Consensus       152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~  231 (928)
T PF04762_consen  152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEP  231 (928)
T ss_pred             eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEc
Confidence                       0 0  00       000000                        02335567899999986655543  


Q ss_pred             CC---CeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEEEEC---CCcEEEEECCCCeEEEEEe----CCCCCEEE
Q 047260          613 ND---NEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLAAAS---DKVVSIFDIETDRQTHSLQ----GHAELVNY  679 (784)
Q Consensus       613 ~d---g~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~~s~---Dg~I~IwDl~t~~~i~~l~----~h~~~V~s  679 (784)
                      ..   ..|+||+-+ +......+   +--.+++|.|.|+.|++.-.   ...|.+|.- +|-....|.    .....|..
T Consensus       232 ~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~  309 (928)
T PF04762_consen  232 ETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVIE  309 (928)
T ss_pred             CCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCceeeE
Confidence            22   579999987 33222222   33457899999998887765   345556653 343333332    34568999


Q ss_pred             EEEcCCCCEEEEEeCCeEEEEeCCCCc--eEEEeccC-CCceEEEEEecCCCE-EEEEECCCeEEEEE----CCCC----
Q 047260          680 ICWDTNGDYLASVSQNLVKVWSMASGE--CIQELSSN-GNQFHSCVFHPSYST-LLVVGGISSLELWN----MAEN----  747 (784)
Q Consensus       680 l~~spdg~~Lasgsdd~I~IwDl~t~~--~i~~l~~~-~~~I~sl~fspdg~~-L~s~s~dg~I~Iwd----l~~~----  747 (784)
                      +.|++|+.+|+..-.+.|.+|-..+..  ...++... ...+..+.|+|...+ |.+.+.+|.+..++    +..+    
T Consensus       310 l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~  389 (928)
T PF04762_consen  310 LAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSS  389 (928)
T ss_pred             EEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCC
Confidence            999999999999888899999998864  23333322 233455899997654 55666656554433    2211    


Q ss_pred             ------------ceEE----------------ecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          748 ------------KSMT----------------IAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       748 ------------~~~~----------------~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                                  ..+.                .......|.+++|++++..+++-..||.|.+|+
T Consensus       390 ~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~  454 (928)
T PF04762_consen  390 PNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYE  454 (928)
T ss_pred             ccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEE
Confidence                        1110                112456899999999998899999999998874

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.98  E-value=3.8e-10  Score=128.01  Aligned_cols=262  Identities=15%  Similarity=0.237  Sum_probs=186.0

Q ss_pred             ceeEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCC--eE
Q 047260          496 TFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDK--SV  573 (784)
Q Consensus       496 ~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg--~I  573 (784)
                      .|+.+++|+.|+...+|++|+.+.++|++|+..|.|++|++.+|.......+|...|+.|.-+.+|..+++.+.-.  ..
T Consensus      1090 RFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred             hcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence            4567788899999999999999999999999999999999999999999999999999999999998887765543  46


Q ss_pred             EEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEe-ecC------CeeEEEEecCCCE
Q 047260          574 RLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHI-TKG------GTAQVRFQPRIGQ  646 (784)
Q Consensus       574 ~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~-~~~------~v~~v~fsp~~~~  646 (784)
                      .+|++.........+.    .-.++.|+.... .-+.|.......+||+.+...... +.+      .-.+..|+|+...
T Consensus      1170 aLW~~~s~~~~~Hsf~----ed~~vkFsn~~q-~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~L 1244 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFD----EDKAVKFSNSLQ-FRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTL 1244 (1516)
T ss_pred             HHhccccccCcccccc----ccceeehhhhHH-HHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcce
Confidence            7999986443444443    346778876533 233344456788999998665544 221      2256779999887


Q ss_pred             EEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEEEeccCCCceEEEEEecC
Q 047260          647 LLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPS  726 (784)
Q Consensus       647 Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspd  726 (784)
                      ++-   ||  .+||++..+.++.|......+ .=.|+|+|.-++.-++    |||+++.+.++.+..-.  -..+.|+..
T Consensus      1245 Iln---dG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINSE----IwD~RTF~lLh~VP~Ld--qc~VtFNst 1312 (1516)
T KOG1832|consen 1245 ILN---DG--VLWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINSE----IWDMRTFKLLHSVPSLD--QCAVTFNST 1312 (1516)
T ss_pred             Eee---Cc--eeeeeccHHHHhhhhhheecc-cccccCCCceEEeech----hhhhHHHHHHhcCcccc--ceEEEeccC
Confidence            763   33  589999988888876544322 2358999998887754    99999998887765432  255677777


Q ss_pred             CCEEEEEEC--C---------------CeEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEE
Q 047260          727 YSTLLVVGG--I---------------SSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASA  774 (784)
Q Consensus       727 g~~L~s~s~--d---------------g~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSg  774 (784)
                      |..++..-.  |               ...+-||....+.+........|..+|-++...++++-
T Consensus      1313 G~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~R~~~Dlct~~~D~~l~vI 1377 (1516)
T KOG1832|consen 1313 GDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVDRCLLDLCTEPTDSFLGVI 1377 (1516)
T ss_pred             ccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeecccchhhhhcCCccceEEEE
Confidence            765544320  0               12334444444444444455667777777777666654

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.97  E-value=2.7e-07  Score=104.18  Aligned_cols=199  Identities=11%  Similarity=0.043  Sum_probs=133.7

Q ss_pred             CeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCc-EEEEEeC--CCeEEEEeCCCCeeEEee--cCCeeEEEEecCCC
Q 047260          571 KSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTD-LFCFCDN--DNEIQYWSINPFLCTHIT--KGGTAQVRFQPRIG  645 (784)
Q Consensus       571 g~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~-ll~sgs~--dg~I~iwDl~~~~~~~~~--~~~v~~v~fsp~~~  645 (784)
                      ..|.+-|.+... ......+  ..+....|+|++.. ++++...  +..|+++|+.+++.....  .+......|+|+++
T Consensus       169 ~~l~~~d~dg~~-~~~~~~~--~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~  245 (419)
T PRK04043        169 SNIVLADYTLTY-QKVIVKG--GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGS  245 (419)
T ss_pred             ceEEEECCCCCc-eeEEccC--CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCC
Confidence            355565655433 2222222  37889999999986 4443333  457999999877655443  35566788999998


Q ss_pred             EEEEEEC---CCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC----eEEEEeCCCCceEEEeccCCCce
Q 047260          646 QLLAAAS---DKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN----LVKVWSMASGECIQELSSNGNQF  718 (784)
Q Consensus       646 ~Ll~~s~---Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd----~I~IwDl~t~~~i~~l~~~~~~I  718 (784)
                      .++....   +..|.++|+.+++.. .+..+........|+|||+.|+..++.    .|.++|+.+++....... ... 
T Consensus       246 ~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~-  322 (419)
T PRK04043        246 KLLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN-  322 (419)
T ss_pred             EEEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc-
Confidence            8776544   357888898877643 344344334456899999988877743    799999988766433322 111 


Q ss_pred             EEEEEecCCCEEEEEECC---------CeEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEECC
Q 047260          719 HSCVFHPSYSTLLVVGGI---------SSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHD  777 (784)
Q Consensus       719 ~sl~fspdg~~L~s~s~d---------g~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs~D  777 (784)
                       ...|+|+|++|+..+..         ..|.+.|+.++....+... .......|+|||+.|+....+
T Consensus       323 -~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~-~~~~~p~~SPDG~~I~f~~~~  388 (419)
T PRK04043        323 -NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTAN-GVNQFPRFSSDGGSIMFIKYL  388 (419)
T ss_pred             -CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCC-CCcCCeEECCCCCEEEEEEcc
Confidence             24899999998887754         2688889988877655543 233468899999987766543

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.93  E-value=2.4e-07  Score=104.85  Aligned_cols=207  Identities=14%  Similarity=0.149  Sum_probs=149.9

Q ss_pred             cceeEEeEeecCCCceEEEEEcCCC------------CEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEcc---
Q 047260          495 FTFCEVGCIRSRNSKVTCCHFSSDG------------KLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRP---  559 (784)
Q Consensus       495 ~~~~~i~~l~~H~~~V~~l~fspdg------------~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fsp---  559 (784)
                      ..+..+..+..|...|+.+.|.|..            -+||++...|.|.|||...+..+..+..|..+|.+++|-+   
T Consensus        43 ~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd  122 (1062)
T KOG1912|consen   43 RSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARD  122 (1062)
T ss_pred             hhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccC
Confidence            4456677788899999999998721            2578888899999999999999999999999999999987   


Q ss_pred             CC-CEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCC-------CeeEEee
Q 047260          560 NS-SQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINP-------FLCTHIT  631 (784)
Q Consensus       560 dg-~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~-------~~~~~~~  631 (784)
                      +. ..|+.-....+|.+|+..+++..-+ +........|+.+.|-+...++.-+..|.|.+-+.-.       ++...+.
T Consensus       123 ~Srd~LlaIh~ss~lvLwntdtG~k~Wk-~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~  201 (1062)
T KOG1912|consen  123 DSRDVLLAIHGSSTLVLWNTDTGEKFWK-YDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQIT  201 (1062)
T ss_pred             cchheeEEecCCcEEEEEEccCCceeec-cccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEe
Confidence            34 4566666778999999999884433 3333456778999997766677767778777766531       2222111


Q ss_pred             cC--------------------C--------eeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEc
Q 047260          632 KG--------------------G--------TAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWD  683 (784)
Q Consensus       632 ~~--------------------~--------v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~s  683 (784)
                      ..                    +        ...++|+|.-+.++.......+.|+|++-..++..+.-..+.+.-+.|-
T Consensus       202 sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vl  281 (1062)
T KOG1912|consen  202 SDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVL  281 (1062)
T ss_pred             cCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEec
Confidence            10                    0        1124678888888888888999999999888887776666666677777


Q ss_pred             CCCC--EEEEEe-CCeEEEEeC
Q 047260          684 TNGD--YLASVS-QNLVKVWSM  702 (784)
Q Consensus       684 pdg~--~Lasgs-dd~I~IwDl  702 (784)
                      |+++  .|++.. +|.+.||-.
T Consensus       282 P~~~rd~LfclH~nG~ltirvr  303 (1062)
T KOG1912|consen  282 PDPRRDALFCLHSNGRLTIRVR  303 (1062)
T ss_pred             cCCCcceEEEEecCCeEEEEEe
Confidence            7654  455544 556666654

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.92  E-value=5.6e-09  Score=126.53  Aligned_cols=241  Identities=14%  Similarity=0.188  Sum_probs=168.8

Q ss_pred             EEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEE
Q 047260          521 LLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDF  600 (784)
Q Consensus       521 ~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~  600 (784)
                      .+.....++.+.-|..+....  .++.+-..|.++.=+|...+.+||+.||.|++|....+..+..........|+.+.|
T Consensus      2182 ~~~~~n~~~~~~tq~~~~~~~--~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f 2259 (2439)
T KOG1064|consen 2182 RFTPSNLPWLGSTQTSRGASV--MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRF 2259 (2439)
T ss_pred             cCCcccCCccccceeccccee--EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhh
Confidence            334344455555555443222  233456778888889988999999999999999998776554444444588999999


Q ss_pred             cCCCCcEEEEEeCCCeEEEEeCCCCeeE--EeecCCeeEEEEecCCCEEEEEEC---CCcEEEEECCCC---eEEEEEeC
Q 047260          601 HPKKTDLFCFCDNDNEIQYWSINPFLCT--HITKGGTAQVRFQPRIGQLLAAAS---DKVVSIFDIETD---RQTHSLQG  672 (784)
Q Consensus       601 sp~~~~ll~sgs~dg~I~iwDl~~~~~~--~~~~~~v~~v~fsp~~~~Ll~~s~---Dg~I~IwDl~t~---~~i~~l~~  672 (784)
                      +..|+ -+..++.||.+.+|.+.+.-..  ..+.....+++|-.  ..+++++.   ++.+.+||....   ..++  ..
T Consensus      2260 ~~qGn-k~~i~d~dg~l~l~q~~pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~ 2334 (2439)
T KOG1064|consen 2260 NHQGN-KFGIVDGDGDLSLWQASPKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TC 2334 (2439)
T ss_pred             cccCC-ceeeeccCCceeecccCCcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--ee
Confidence            99987 5666778999999999843222  23334556666654  44555543   689999997542   2333  67


Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceEE
Q 047260          673 HAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMT  751 (784)
Q Consensus       673 h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~  751 (784)
                      |.+.++++++.|...+|++|+.+ .|++||++..+.++++..         ++ ...++++++..|.|+||++..-..+.
T Consensus      2335 H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~ 2404 (2439)
T KOG1064|consen 2335 HDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLH 2404 (2439)
T ss_pred             cCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhh
Confidence            99999999999999999999954 999999999888777754         44 55689999999999999998875552


Q ss_pred             ec----ccCCce----EEEEEeCCCCEEEEEECCCc
Q 047260          752 IA----AHENII----SALAQSPVTGMVASASHDSS  779 (784)
Q Consensus       752 ~~----~h~~~V----~slafspdg~~LaSgs~DG~  779 (784)
                      ..    +|.+..    ..+... ..+.|.+|+.||+
T Consensus      2405 ~~p~e~ak~gfFr~~g~Q~~v~-~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2405 TFPSEHAKQGFFRNIGMQINVG-QCNRIFSCGADGT 2439 (2439)
T ss_pred             cCchhhcccchhhhcCceeeec-cCceEEEecCCCC
Confidence            22    222211    112222 2457788888874

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.91  E-value=3.9e-06  Score=87.96  Aligned_cols=215  Identities=17%  Similarity=0.196  Sum_probs=143.7

Q ss_pred             EEEEcC-CCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEc-cCCCEEEEEeCCCeEEEEcCCCCcceeee-c
Q 047260          512 CCHFSS-DGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFR-PNSSQLATASVDKSVRLWDAANPNFCSQA-Y  588 (784)
Q Consensus       512 ~l~fsp-dg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fs-pdg~~Latgs~Dg~I~IWdl~~~~~~~~~-~  588 (784)
                      +++|.+ ++.++++--..+.|..|+..+++..... ...  ...+.+. +++ .|+.+..++ +.++|+.+++..... .
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~-~~~--~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~~   78 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVID-LPG--PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLADL   78 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE-SSS--EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEe-cCC--CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEeec
Confidence            578888 7777777778899999999987654322 122  6777777 565 555555544 556698876532111 1


Q ss_pred             --cC-CCCCeEEEEEcCCCCcEEEEEeCC--------CeEEEEeCCCCeeEEee--cCCeeEEEEecCCCEEEEEEC-CC
Q 047260          589 --TG-HSSPIMSLDFHPKKTDLFCFCDND--------NEIQYWSINPFLCTHIT--KGGTAQVRFQPRIGQLLAAAS-DK  654 (784)
Q Consensus       589 --~~-h~~~V~sl~~sp~~~~ll~sgs~d--------g~I~iwDl~~~~~~~~~--~~~v~~v~fsp~~~~Ll~~s~-Dg  654 (784)
                        .. .......+++.++|. ++++....        |.|..++.. .+.....  -.....++|+|+++.|+++.. .+
T Consensus        79 ~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~  156 (246)
T PF08450_consen   79 PDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNG  156 (246)
T ss_dssp             ETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTT
T ss_pred             cCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccc
Confidence              11 345688999999988 55555433        568888887 4433332  255678999999998886665 78


Q ss_pred             cEEEEECCCCe-------EEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEeCCCCceEEEeccCCCceEEEEEe-c
Q 047260          655 VVSIFDIETDR-------QTHSLQGHAELVNYICWDTNGDYLASVS-QNLVKVWSMASGECIQELSSNGNQFHSCVFH-P  725 (784)
Q Consensus       655 ~I~IwDl~t~~-------~i~~l~~h~~~V~sl~~spdg~~Lasgs-dd~I~IwDl~t~~~i~~l~~~~~~I~sl~fs-p  725 (784)
                      .|..||+....       ....+....+....++++.+|++.++.. .+.|.++|.. |+.+..+......+++|+|. +
T Consensus       157 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~  235 (246)
T PF08450_consen  157 RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGP  235 (246)
T ss_dssp             EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEEST
T ss_pred             eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECC
Confidence            89999986321       1122222233478899999999877766 4599999988 88888888776689999994 6


Q ss_pred             CCCEEEEEE
Q 047260          726 SYSTLLVVG  734 (784)
Q Consensus       726 dg~~L~s~s  734 (784)
                      +.+.|++.+
T Consensus       236 ~~~~L~vTt  244 (246)
T PF08450_consen  236 DGKTLYVTT  244 (246)
T ss_dssp             TSSEEEEEE
T ss_pred             CCCEEEEEe
Confidence            666666654

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.89  E-value=5.1e-07  Score=97.37  Aligned_cols=269  Identities=13%  Similarity=0.147  Sum_probs=165.3

Q ss_pred             cCCCceEEEEEcCCCCEEEEEeCCC-eEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcc
Q 047260          505 SRNSKVTCCHFSSDGKLLASSGHDR-KVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNF  583 (784)
Q Consensus       505 ~H~~~V~~l~fspdg~~Lasgs~Dg-~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~  583 (784)
                      +|.+.|.-..+..+++-++.|..|| .|-|+|.++++.. .+...-+.|.++..+++|++++.+.....|.+.|+++++ 
T Consensus       357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k-r~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn-  434 (668)
T COG4946         357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK-RIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN-  434 (668)
T ss_pred             CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE-EeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC-
Confidence            5788899999999999999999999 8999999977654 455677889999999999999999999999999999987 


Q ss_pred             eeeeccCCCCCeEEEEEcCCCCcEEEEEeCCC----eEEEEeCCCCeeEEeecCCe--eEEEEecCCCEEEEEECCCcEE
Q 047260          584 CSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDN----EIQYWSINPFLCTHITKGGT--AQVRFQPRIGQLLAAASDKVVS  657 (784)
Q Consensus       584 ~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg----~I~iwDl~~~~~~~~~~~~v--~~v~fsp~~~~Ll~~s~Dg~I~  657 (784)
                      ....-....+-|+.++|+|+++. ++-+--+|    .|+++|+...+.........  .+-+|.|++++|+.-+.-    
T Consensus       435 v~~idkS~~~lItdf~~~~nsr~-iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~R----  509 (668)
T COG4946         435 VRLIDKSEYGLITDFDWHPNSRW-IAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSAR----  509 (668)
T ss_pred             eeEecccccceeEEEEEcCCcee-EEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEecc----
Confidence            44444556678999999999884 44444344    68999999988877665443  445799999988765531    


Q ss_pred             EEECCCCeEEEEE--eCCCCCEEEEE----EcC-----------CCCEEEEEeCCeEEEEeCCCCceEEEeccCCCceEE
Q 047260          658 IFDIETDRQTHSL--QGHAELVNYIC----WDT-----------NGDYLASVSQNLVKVWSMASGECIQELSSNGNQFHS  720 (784)
Q Consensus       658 IwDl~t~~~i~~l--~~h~~~V~sl~----~sp-----------dg~~Lasgsdd~I~IwDl~t~~~i~~l~~~~~~I~s  720 (784)
                      -.|..+.+.+..+  ..+..+...+.    .+|           .+++.+-+-++.+.=+.+..+.-........+.|.-
T Consensus       510 sLdPs~Drv~fnf~f~~vskPylv~L~~g~~sP~~q~p~~~~~ea~e~dle~ie~r~eP~pVee~dY~sI~~lk~~kill  589 (668)
T COG4946         510 SLDPSNDRVIFNFSFQRVSKPYLVVLGRGYYSPFNQPPDEANSEAGEVDLEGIEDRVEPFPVEEGDYRSIAGLKNGKILL  589 (668)
T ss_pred             ccCCCCCeeEEEEEEeeeccceEEEecCCCCChhhcCchhcCccccceehhhhcccccccccCccceeEeeecCCCeEEE
Confidence            1111111111111  11111111000    011           111111111111111111111111111111111221


Q ss_pred             EEEecCCC---EEEEEECCCeEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          721 CVFHPSYS---TLLVVGGISSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       721 l~fspdg~---~L~s~s~dg~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      ..+--.|.   ++...-..|.|.+||+++.+...+   ...|.++..|+|+..|.. -.||.++++|
T Consensus       590 fs~pi~Gefs~yy~gq~~kG~l~~ydletkk~~e~---k~nvss~rlS~D~s~ilv-k~d~kl~~f~  652 (668)
T COG4946         590 FSYPIHGEFSQYYWGQPEKGRLEKYDLETKKVEEY---KDNVSSFRLSSDGSKILV-KLDGKLRLFD  652 (668)
T ss_pred             EEeeccchhhhhhcCCCccceEEEEecchhhHHHH---hcccceEEEcCCCCEEEE-EeCCeEEEEe
Confidence            11111111   112122347889999888765433   356888999999998888 7899999885

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.86  E-value=7.4e-09  Score=112.48  Aligned_cols=204  Identities=20%  Similarity=0.308  Sum_probs=148.9

Q ss_pred             eeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCc------ceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCC
Q 047260          542 ESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPN------FCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDN  615 (784)
Q Consensus       542 ~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~------~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg  615 (784)
                      +..+.+|...|..+.-..+.+.+++++.|++|++|.++...      .+..++..|+.+|.++.|..+.+ .+++|  ||
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr-~i~Sc--D~  804 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR-SIASC--DG  804 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc-eeeec--cC
Confidence            45677999999999887788899999999999999987532      25677889999999999987755 44444  89


Q ss_pred             eEEEEeCCCCeeEEe-----ecCCeeEEEEec--CCCEEEEE-ECCCcEEEEECCCCeEEEEEe-----CCCCCEEEEEE
Q 047260          616 EIQYWSINPFLCTHI-----TKGGTAQVRFQP--RIGQLLAA-ASDKVVSIFDIETDRQTHSLQ-----GHAELVNYICW  682 (784)
Q Consensus       616 ~I~iwDl~~~~~~~~-----~~~~v~~v~fsp--~~~~Ll~~-s~Dg~I~IwDl~t~~~i~~l~-----~h~~~V~sl~~  682 (784)
                      .|.+||.=-++.+..     ..+.+..+..-+  +...++++ +...+|+++|.+..+-...++     +.+..+.+++.
T Consensus       805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV  884 (1034)
T KOG4190|consen  805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV  884 (1034)
T ss_pred             cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence            999999754333221     123333343333  33445555 348999999999987666554     34567899999


Q ss_pred             cCCCCEEEEEe-CCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEE-EECCCCce
Q 047260          683 DTNGDYLASVS-QNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLEL-WNMAENKS  749 (784)
Q Consensus       683 spdg~~Lasgs-dd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~I-wdl~~~~~  749 (784)
                      .+.|+.++++- .++|.+.|.++|+.+..+.........++ .|....++....|.++.+ |...++..
T Consensus       885 a~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgim  952 (1034)
T KOG4190|consen  885 ADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIM  952 (1034)
T ss_pred             ccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCee
Confidence            99999998875 56999999999999988876655544443 345556777777888888 87665543

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.86  E-value=2.2e-08  Score=107.24  Aligned_cols=246  Identities=13%  Similarity=0.149  Sum_probs=175.6

Q ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEECCC---CceeeecCCCCCCeEEEEEccCCCEEEEEeC-CCeEEEEcCCCC
Q 047260          506 RNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDT---LQTESTPEDHKSVVTDVRFRPNSSQLATASV-DKSVRLWDAANP  581 (784)
Q Consensus       506 H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t---~~~~~~l~~h~~~It~i~fspdg~~Latgs~-Dg~I~IWdl~~~  581 (784)
                      |.+.|+.+..+ -.+++.+++.||.++.|.-..   -+.+..+..|-..|.+++.+-++..+.|.+. |..++++|+++-
T Consensus         8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~   86 (558)
T KOG0882|consen    8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF   86 (558)
T ss_pred             ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence            77888887655 456999999999999998653   2445566788899999999999999999888 999999999875


Q ss_pred             ccee-eeccCCCCCeEEEEEcCC-CC-cEEEEEeCCCeEEEEeCCCCee-----EEeecCCeeEEEEecCCCEEEEEECC
Q 047260          582 NFCS-QAYTGHSSPIMSLDFHPK-KT-DLFCFCDNDNEIQYWSINPFLC-----THITKGGTAQVRFQPRIGQLLAAASD  653 (784)
Q Consensus       582 ~~~~-~~~~~h~~~V~sl~~sp~-~~-~ll~sgs~dg~I~iwDl~~~~~-----~~~~~~~v~~v~fsp~~~~Ll~~s~D  653 (784)
                      .... ..+....+.+.++ .++. .. .+.++.-.++.|.++|-....|     ...+..++.++.+.+.+..+++....
T Consensus        87 DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~  165 (558)
T KOG0882|consen   87 DMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDIS  165 (558)
T ss_pred             chhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecccc
Confidence            5221 1111122222222 1221 11 2334445688999999875432     23345789999999999999999999


Q ss_pred             CcEEEEECCC------CeEE---------EEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccC---
Q 047260          654 KVVSIFDIET------DRQT---------HSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSN---  714 (784)
Q Consensus       654 g~I~IwDl~t------~~~i---------~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~---  714 (784)
                      |.|..|..+.      .+..         ..+........+++|+|++..+.+-+++ .|+++++++++.+.++...   
T Consensus       166 gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~  245 (558)
T KOG0882|consen  166 GMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTD  245 (558)
T ss_pred             ceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchh
Confidence            9999998873      1111         1122345677899999999999998877 9999999999876655321   


Q ss_pred             -----------------------------C-CceEEEEEecCCCEEEEEECCCeEEEEECCCCceEEecc
Q 047260          715 -----------------------------G-NQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIAA  754 (784)
Q Consensus       715 -----------------------------~-~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~~~  754 (784)
                                                   + ..-..++|...+++|+.++--| |++.++.++.+.++.+
T Consensus       246 ~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~g  314 (558)
T KOG0882|consen  246 AQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILG  314 (558)
T ss_pred             hhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEec
Confidence                                         1 1235678888999998887765 8899999888765443

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.85  E-value=1.3e-06  Score=107.30  Aligned_cols=230  Identities=11%  Similarity=0.199  Sum_probs=157.4

Q ss_pred             CCCCeEEEEEccCCCEEEEEeCCCeEEEE----cCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCC
Q 047260          548 HKSVVTDVRFRPNSSQLATASVDKSVRLW----DAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSIN  623 (784)
Q Consensus       548 h~~~It~i~fspdg~~Latgs~Dg~I~IW----dl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~  623 (784)
                      ....|.++.|.++...|+.+..+|.|.+.    +..+..  ......-...|.+++|+||+. +++..+.++.|.+.+..
T Consensus        74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~--~E~VG~vd~GI~a~~WSPD~E-lla~vT~~~~l~~mt~~  150 (928)
T PF04762_consen   74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE--IEIVGSVDSGILAASWSPDEE-LLALVTGEGNLLLMTRD  150 (928)
T ss_pred             CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce--eEEEEEEcCcEEEEEECCCcC-EEEEEeCCCEEEEEecc
Confidence            45789999999999999999999999999    555433  333334567899999999988 55555557776665321


Q ss_pred             ---------------C-------------------Cee----EEe------------ecCCeeEEEEecCCCEEEEEEC-
Q 047260          624 ---------------P-------------------FLC----THI------------TKGGTAQVRFQPRIGQLLAAAS-  652 (784)
Q Consensus       624 ---------------~-------------------~~~----~~~------------~~~~v~~v~fsp~~~~Ll~~s~-  652 (784)
                                     .                   ++.    ...            ....-..++|-.||.++++.+. 
T Consensus       151 fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~  230 (928)
T PF04762_consen  151 FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVE  230 (928)
T ss_pred             ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEE
Confidence                           0                   000    000            1224456889999999998875 


Q ss_pred             --C---CcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeC---C-eEEEEeCCCCceEEEe----ccCCCceE
Q 047260          653 --D---KVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQ---N-LVKVWSMASGECIQEL----SSNGNQFH  719 (784)
Q Consensus       653 --D---g~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsd---d-~I~IwDl~t~~~i~~l----~~~~~~I~  719 (784)
                        .   ..|+||+-+ |.....-+.-.+--.+++|.|.|.+||+...   . .|.+|.- +|-.-.+|    ......|.
T Consensus       231 ~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~  308 (928)
T PF04762_consen  231 PETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVI  308 (928)
T ss_pred             cCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCceee
Confidence              2   578999976 6555544444455567899999999999873   2 7888874 33322222    24467899


Q ss_pred             EEEEecCCCEEEEEECCCeEEEEECCCCceE---Eec-ccCCceEEEEEeCCCC-EEEEEECCCcEEEe
Q 047260          720 SCVFHPSYSTLLVVGGISSLELWNMAENKSM---TIA-AHENIISALAQSPVTG-MVASASHDSSVKLW  783 (784)
Q Consensus       720 sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~---~~~-~h~~~V~slafspdg~-~LaSgs~DG~V~IW  783 (784)
                      .+.|++++..|++...|. |.+|-..+..-.   .+. .....+..+.|+|... .|...+.+|.+.++
T Consensus       309 ~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~  376 (928)
T PF04762_consen  309 ELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIY  376 (928)
T ss_pred             EEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEE
Confidence            999999999988877654 999998887643   222 2334455699998654 46666665666543

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.84  E-value=1.8e-06  Score=89.52  Aligned_cols=215  Identities=13%  Similarity=0.009  Sum_probs=138.3

Q ss_pred             CCCeEEEEECCCCceeeecCCCCCCeEEEE--EccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCC
Q 047260          527 HDRKVVLWNMDTLQTESTPEDHKSVVTDVR--FRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKK  604 (784)
Q Consensus       527 ~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~--fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~  604 (784)
                      .+|.|..||..+++.+..... ...+....  ..+++..+++++.++.|..||..+++..-..-.  ...+...... .+
T Consensus         1 ~~g~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~--~~~~~~~~~~-~~   76 (238)
T PF13360_consen    1 DDGTLSALDPRTGKELWSYDL-GPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL--PGPISGAPVV-DG   76 (238)
T ss_dssp             -TSEEEEEETTTTEEEEEEEC-SSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC--SSCGGSGEEE-ET
T ss_pred             CCCEEEEEECCCCCEEEEEEC-CCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec--cccccceeee-cc
Confidence            378999999999999888743 11122222  233566788888999999999998874333222  1221111122 22


Q ss_pred             CcEEEEEeCCCeEEEEeCCCCeeEEee-cC------CeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCC-
Q 047260          605 TDLFCFCDNDNEIQYWSINPFLCTHIT-KG------GTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAEL-  676 (784)
Q Consensus       605 ~~ll~sgs~dg~I~iwDl~~~~~~~~~-~~------~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~-  676 (784)
                      . .++++..++.|+.+|..+++.+... ..      ..........+..++++..++.|..+|+++|+.+......... 
T Consensus        77 ~-~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~  155 (238)
T PF13360_consen   77 G-RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRG  155 (238)
T ss_dssp             T-EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-S
T ss_pred             c-ccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCC
Confidence            3 3455557889999999988887763 21      1122333444788999999999999999999998888764322 


Q ss_pred             ---------EEEEEEcCCCCEEEEEeCCe-EEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCC
Q 047260          677 ---------VNYICWDTNGDYLASVSQNL-VKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAE  746 (784)
Q Consensus       677 ---------V~sl~~spdg~~Lasgsdd~-I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~  746 (784)
                               +..-....++.++++..++. +.+ |+.+++.+....  ...+.. ....++..|++++.++.|.+||+.+
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~tg~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~t  231 (238)
T PF13360_consen  156 SSPISSFSDINGSPVISDGRVYVSSGDGRVVAV-DLATGEKLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKT  231 (238)
T ss_dssp             S--EEEETTEEEEEECCTTEEEEECCTSSEEEE-ETTTTEEEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEEETTT
T ss_pred             CcceeeecccccceEEECCEEEEEcCCCeEEEE-ECCCCCEEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEEECCC
Confidence                     12222333454444444554 566 999999765443  222222 2456777888888999999999999


Q ss_pred             CceE
Q 047260          747 NKSM  750 (784)
Q Consensus       747 ~~~~  750 (784)
                      ++..
T Consensus       232 G~~~  235 (238)
T PF13360_consen  232 GKVV  235 (238)
T ss_dssp             TEEE
T ss_pred             CCEE
Confidence            9865

...

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.82  E-value=7.2e-07  Score=90.26  Aligned_cols=243  Identities=10%  Similarity=0.027  Sum_probs=159.7

Q ss_pred             CCeEEEEECCCCc--eeeecCCCCCCeEEEEEcc-----CCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEE
Q 047260          528 DRKVVLWNMDTLQ--TESTPEDHKSVVTDVRFRP-----NSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDF  600 (784)
Q Consensus       528 Dg~I~IWd~~t~~--~~~~l~~h~~~It~i~fsp-----dg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~  600 (784)
                      ...|-+|++.+..  .+...       +.+.|.|     ...+|+.|+.-|...+|...+..........|...|+-+.-
T Consensus        51 t~sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r  123 (344)
T KOG4532|consen   51 TISVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKR  123 (344)
T ss_pred             eeeeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhh
Confidence            3446777765433  22222       3344544     44589999999999999998766555544445444433322


Q ss_pred             cCCCCcEEEEEeCCCeEEEEeCCCCeeE---EeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCC--eEEE-EEeCCC
Q 047260          601 HPKKTDLFCFCDNDNEIQYWSINPFLCT---HITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETD--RQTH-SLQGHA  674 (784)
Q Consensus       601 sp~~~~ll~sgs~dg~I~iwDl~~~~~~---~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~--~~i~-~l~~h~  674 (784)
                      .-+...-+..++.|.++++.+++.....   +.-.-....+.++++++++++.+....|..|.+...  ..+. ......
T Consensus       124 ~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~  203 (344)
T KOG4532|consen  124 YCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTS  203 (344)
T ss_pred             hcccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccC
Confidence            2233334555777888888877643222   222234788999999999999999999999988754  2233 223344


Q ss_pred             CCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCce-EE----EeccCCCceEEEEEecCCC--EEEEEECCCeEEEEECCC
Q 047260          675 ELVNYICWDTNGDYLASVSQN-LVKVWSMASGEC-IQ----ELSSNGNQFHSCVFHPSYS--TLLVVGGISSLELWNMAE  746 (784)
Q Consensus       675 ~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~-i~----~l~~~~~~I~sl~fspdg~--~L~s~s~dg~I~Iwdl~~  746 (784)
                      +.-.+..|+.....+|++..| ++.|||++.... ..    +-..|.+.+..|.|++.|.  .|+..-.-+.+.+.|+++
T Consensus       204 D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~  283 (344)
T KOG4532|consen  204 DHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRN  283 (344)
T ss_pred             CCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEccc
Confidence            556788999999999999955 999999987532 22    2235788999999998764  355555567899999998


Q ss_pred             CceEE--------ecccCC-ceEEEEEeCCCCEEEEEECC
Q 047260          747 NKSMT--------IAAHEN-IISALAQSPVTGMVASASHD  777 (784)
Q Consensus       747 ~~~~~--------~~~h~~-~V~slafspdg~~LaSgs~D  777 (784)
                      .+...        ...|.. .|..-+|+.++..+.+.+.+
T Consensus       284 ~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~  323 (344)
T KOG4532|consen  284 YVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL  323 (344)
T ss_pred             CceeeEEecCccccccccccccccccccCCCcccccccch
Confidence            86542        223333 37778888877766655443

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.82  E-value=3.4e-07  Score=103.68  Aligned_cols=234  Identities=16%  Similarity=0.223  Sum_probs=162.9

Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCC------------CEEEEEeCCCeEEEEc
Q 047260          510 VTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNS------------SQLATASVDKSVRLWD  577 (784)
Q Consensus       510 V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg------------~~Latgs~Dg~I~IWd  577 (784)
                      -.++.|+|.| +||.|+. ..|.|.|..+.+.+..+..|...|+.|.|.|..            -+||++...|.|.+||
T Consensus        18 ~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d   95 (1062)
T KOG1912|consen   18 RNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVD   95 (1062)
T ss_pred             ccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEE
Confidence            6678899877 6777664 469999999999999999999999999998721            2567777789999999


Q ss_pred             CCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCCeeEEEEecCC-CEEEEEECCCcE
Q 047260          578 AANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRI-GQLLAAASDKVV  656 (784)
Q Consensus       578 l~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v~~v~fsp~~-~~Ll~~s~Dg~I  656 (784)
                      ..... ....+..|.++|..++|-+...                                     +. ..|++......|
T Consensus        96 ~~~~s-~~~~l~~~~~~~qdl~W~~~rd-------------------------------------~Srd~LlaIh~ss~l  137 (1062)
T KOG1912|consen   96 FVLAS-VINWLSHSNDSVQDLCWVPARD-------------------------------------DSRDVLLAIHGSSTL  137 (1062)
T ss_pred             ehhhh-hhhhhcCCCcchhheeeeeccC-------------------------------------cchheeEEecCCcEE
Confidence            98765 5556677888898888876432                                     11 234444455677


Q ss_pred             EEEECCCCeEEEEEeCCCCCEEEEEEcC-CCC-EEEEEeCCeEEEEeCCC-------CceEEEeccCCC-----------
Q 047260          657 SIFDIETDRQTHSLQGHAELVNYICWDT-NGD-YLASVSQNLVKVWSMAS-------GECIQELSSNGN-----------  716 (784)
Q Consensus       657 ~IwDl~t~~~i~~l~~h~~~V~sl~~sp-dg~-~Lasgsdd~I~IwDl~t-------~~~i~~l~~~~~-----------  716 (784)
                      .+|+..+|+.............|+.++| |.+ +.+.++.|.|.+.+.-.       ++....-..|..           
T Consensus       138 vLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~  217 (1062)
T KOG1912|consen  138 VLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATG  217 (1062)
T ss_pred             EEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhcc
Confidence            7777777777766665556666777777 333 44445566555555421       122222112111           


Q ss_pred             -c-------------eEEEEEecCCCEEEEEECCCeEEEEECCCCceEE-ecccCCceEEEEEeCCCC--EEEEEECCCc
Q 047260          717 -Q-------------FHSCVFHPSYSTLLVVGGISSLELWNMAENKSMT-IAAHENIISALAQSPVTG--MVASASHDSS  779 (784)
Q Consensus       717 -~-------------I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~-~~~h~~~V~slafspdg~--~LaSgs~DG~  779 (784)
                       .             ...++|+|..+.++...-...+.|+|++-..++. +.-..+.+.-+.|-|+.+  .|++.-.||+
T Consensus       218 ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~  297 (1062)
T KOG1912|consen  218 NSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGR  297 (1062)
T ss_pred             ccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCe
Confidence             0             1235678988888888888899999999888773 333445556677777654  7899999999


Q ss_pred             EEEe
Q 047260          780 VKLW  783 (784)
Q Consensus       780 V~IW  783 (784)
                      +.||
T Consensus       298 ltir  301 (1062)
T KOG1912|consen  298 LTIR  301 (1062)
T ss_pred             EEEE
Confidence            9998

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.78  E-value=1.2e-07  Score=100.94  Aligned_cols=131  Identities=16%  Similarity=0.244  Sum_probs=97.7

Q ss_pred             EEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcC
Q 047260          499 EVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDA  578 (784)
Q Consensus       499 ~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl  578 (784)
                      ...++......|+.+..+......-.+++...+.+|....+.....+ +|-..+++|+|+||+++|+++..|..|+|-..
T Consensus       102 ~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~l-GhvSml~dVavS~D~~~IitaDRDEkIRvs~y  180 (390)
T KOG3914|consen  102 DVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPIL-GHVSMLLDVAVSPDDQFIITADRDEKIRVSRY  180 (390)
T ss_pred             eEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcchhh-hhhhhhheeeecCCCCEEEEecCCceEEEEec
Confidence            33333334444555544433333333455566777776665554444 89999999999999999999999999999888


Q ss_pred             CCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec
Q 047260          579 ANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK  632 (784)
Q Consensus       579 ~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~  632 (784)
                      ...........||+.-|..++..++.  .|++++.|++|++||+.++++++.+.
T Consensus       181 pa~f~IesfclGH~eFVS~isl~~~~--~LlS~sGD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  181 PATFVIESFCLGHKEFVSTISLTDNY--LLLSGSGDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             CcccchhhhccccHhheeeeeeccCc--eeeecCCCCcEEEEecccCCcccccc
Confidence            77665556667899999999998764  58899999999999999998886654

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.78  E-value=3.7e-06  Score=94.63  Aligned_cols=254  Identities=9%  Similarity=-0.023  Sum_probs=155.1

Q ss_pred             CCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCC----C
Q 047260          519 GKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSS----P  594 (784)
Q Consensus       519 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~----~  594 (784)
                      +..++.++.+|.|+.+|.++++.+...............  .+..++.++.++.|..+|.++++..-........    .
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~  197 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRG  197 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccC
Confidence            456777888999999999999998877543321111122  2446777888999999999988743322211100    0


Q ss_pred             eEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecC--C--------eeEEEEec--CCCEEEEEECCCcEEEEECC
Q 047260          595 IMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKG--G--------TAQVRFQP--RIGQLLAAASDKVVSIFDIE  662 (784)
Q Consensus       595 V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~--~--------v~~v~fsp--~~~~Ll~~s~Dg~I~IwDl~  662 (784)
                      ..+....  +. .++.+..++.+..+|..+++.+.....  +        ...+..+|  .++.+++++.+|.+..+|..
T Consensus       198 ~~sP~v~--~~-~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~  274 (394)
T PRK11138        198 ESAPATA--FG-GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLR  274 (394)
T ss_pred             CCCCEEE--CC-EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECC
Confidence            0011111  12 455567789999999887765543321  0        00111112  35678888889999999999


Q ss_pred             CCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEEEeccCC-CceEEEEEecCCCEEEEEECCCeEEE
Q 047260          663 TDRQTHSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELSSNG-NQFHSCVFHPSYSTLLVVGGISSLEL  741 (784)
Q Consensus       663 t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~~l~~~~-~~I~sl~fspdg~~L~s~s~dg~I~I  741 (784)
                      +++.+.....  .....+.. .++.+++...++.|..+|..+++.+....... ....+..+  .+.+|++++.+|.|++
T Consensus       275 tG~~~W~~~~--~~~~~~~~-~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~  349 (394)
T PRK11138        275 SGQIVWKREY--GSVNDFAV-DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHW  349 (394)
T ss_pred             CCCEEEeecC--CCccCcEE-ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEE
Confidence            9987765432  11112222 23444444446699999999998776543211 12222223  2457899999999999


Q ss_pred             EECCCCceEE-ecccCCceE-EEEEeCCCCEEEEEECCCcEEEeC
Q 047260          742 WNMAENKSMT-IAAHENIIS-ALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       742 wdl~~~~~~~-~~~h~~~V~-slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      +|..+++.+. ..-....+. ...+  .+..|+.++.||.|+.++
T Consensus       350 ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~  392 (394)
T PRK11138        350 INREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAIT  392 (394)
T ss_pred             EECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEe
Confidence            9999998873 222222222 2222  245788899999998764

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.77  E-value=9.9e-07  Score=89.28  Aligned_cols=229  Identities=14%  Similarity=0.039  Sum_probs=147.5

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCcee-eecCCCCCCeEEEEEcc-CCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCe
Q 047260          518 DGKLLASSGHDRKVVLWNMDTLQTE-STPEDHKSVVTDVRFRP-NSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPI  595 (784)
Q Consensus       518 dg~~Lasgs~Dg~I~IWd~~t~~~~-~~l~~h~~~It~i~fsp-dg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V  595 (784)
                      ...+||.||..|...+|...+.... .....|...|+-+.=.- ....+..++.|.++++.+++-+......... .-.+
T Consensus        83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~-~~~~  161 (344)
T KOG4532|consen   83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQ-NLTQ  161 (344)
T ss_pred             cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecc-ccce
Confidence            3458999999999999999865433 33334444333222111 2234677888999999988754321111111 1238


Q ss_pred             EEEEEcCCCCcEEEEEeCCCeEEEEeCCCC--eeEE----eecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEE
Q 047260          596 MSLDFHPKKTDLFCFCDNDNEIQYWSINPF--LCTH----ITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHS  669 (784)
Q Consensus       596 ~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~--~~~~----~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~  669 (784)
                      .++.+++++. +.++.++...|..|.+...  ..+.    ....+--+..|+.....++++..||++.|||++.......
T Consensus       162 ns~~~snd~~-~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~  240 (344)
T KOG4532|consen  162 NSLHYSNDPS-WGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMA  240 (344)
T ss_pred             eeeEEcCCCc-eEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchh
Confidence            8999999988 4455555778888888642  2222    1224556788999999999999999999999997643322


Q ss_pred             E-----eCCCCCEEEEEEcCCCCE-EEEEeC--CeEEEEeCCCCceEEEeccCC--------CceEEEEEecCCCEEEEE
Q 047260          670 L-----QGHAELVNYICWDTNGDY-LASVSQ--NLVKVWSMASGECIQELSSNG--------NQFHSCVFHPSYSTLLVV  733 (784)
Q Consensus       670 l-----~~h~~~V~sl~~spdg~~-Lasgsd--d~I~IwDl~t~~~i~~l~~~~--------~~I~sl~fspdg~~L~s~  733 (784)
                      .     ..|.+.++.+.|++.|.+ |..-++  ..+.|.|+++++....+....        ..|....|+.++..+.+.
T Consensus       241 ~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~  320 (344)
T KOG4532|consen  241 EISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVK  320 (344)
T ss_pred             hhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccc
Confidence            2     248899999999986642 333344  499999999987555443222        226667777777666666


Q ss_pred             ECCCeEEEEECCCCce
Q 047260          734 GGISSLELWNMAENKS  749 (784)
Q Consensus       734 s~dg~I~Iwdl~~~~~  749 (784)
                      +.+ .+.=|++.....
T Consensus       321 ~e~-~~ae~ni~srsR  335 (344)
T KOG4532|consen  321 NEL-QGAEYNILSRSR  335 (344)
T ss_pred             cch-hhheeeccccce
Confidence            554 344555554443

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.73  E-value=2.5e-08  Score=111.96  Aligned_cols=204  Identities=18%  Similarity=0.302  Sum_probs=148.9

Q ss_pred             eEeecCCCceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCc-eeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcC
Q 047260          501 GCIRSRNSKVTCCHFSSD-GKLLASSGHDRKVVLWNMDTLQ-TESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDA  578 (784)
Q Consensus       501 ~~l~~H~~~V~~l~fspd-g~~Lasgs~Dg~I~IWd~~t~~-~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl  578 (784)
                      ..+.+|...|+.+.|.|. ...|++++.|..|..||+.+-. .+..+..-....+.|+|+-....+++.+..+.|+|||+
T Consensus       108 f~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~  187 (1081)
T KOG0309|consen  108 FVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDL  187 (1081)
T ss_pred             EEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEec
Confidence            357889999999999995 4589999999999999998643 44444444566788999985555566667788999999


Q ss_pred             CCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeE----EeecCCeeEEEEecCCCEEEEEEC--
Q 047260          579 ANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCT----HITKGGTAQVRFQPRIGQLLAAAS--  652 (784)
Q Consensus       579 ~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~----~~~~~~v~~v~fsp~~~~Ll~~s~--  652 (784)
                      +.+..+...+++|...|..++|+......+.+++.|++|++||.......    ...+.++..-++.|-|.-.++--.  
T Consensus       188 r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G  267 (1081)
T KOG0309|consen  188 RKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVG  267 (1081)
T ss_pred             cCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccC
Confidence            99888888899999999999998877778889999999999998753222    222345555566665543332221  


Q ss_pred             CCcEEEE---------ECCC-CeEEEEEeCCCCCEEEEEEcCCC----------CEEEEEeCC-eEEEEeCCC
Q 047260          653 DKVVSIF---------DIET-DRQTHSLQGHAELVNYICWDTNG----------DYLASVSQN-LVKVWSMAS  704 (784)
Q Consensus       653 Dg~I~Iw---------Dl~t-~~~i~~l~~h~~~V~sl~~spdg----------~~Lasgsdd-~I~IwDl~t  704 (784)
                      +..|.++         +..+ ..+++.|.+|.+.|....|-..+          -.|++=+.| .+++|-+.+
T Consensus       268 ~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  268 GNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             CeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence            2233333         3333 36889999999988877774322          257787766 999998754

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.72  E-value=1.2e-05  Score=85.17  Aligned_cols=240  Identities=13%  Similarity=0.097  Sum_probs=162.1

Q ss_pred             ceEEEEEcC-CCCEEEEEeCCCe-EEEEECCCCceeeecCCCCCCe--EEEEEccCCCEEEEEeC-----CCeEEEEcCC
Q 047260          509 KVTCCHFSS-DGKLLASSGHDRK-VVLWNMDTLQTESTPEDHKSVV--TDVRFRPNSSQLATASV-----DKSVRLWDAA  579 (784)
Q Consensus       509 ~V~~l~fsp-dg~~Lasgs~Dg~-I~IWd~~t~~~~~~l~~h~~~I--t~i~fspdg~~Latgs~-----Dg~I~IWdl~  579 (784)
                      ....++.+| ++..++.+-.-|+ ..+||..+++....+....+.-  =.-.|++||++|++.-.     .|.|-|||..
T Consensus         6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~   85 (305)
T PF07433_consen    6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA   85 (305)
T ss_pred             cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence            345678888 5566777777665 7889999998887765433322  13689999999999743     4789999999


Q ss_pred             CCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCCeeEEEEecCC--CEEEEEECCCcEE
Q 047260          580 NPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRI--GQLLAAASDKVVS  657 (784)
Q Consensus       580 ~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v~~v~fsp~~--~~Ll~~s~Dg~I~  657 (784)
                      ..-..+..+..|.-....+.+.|+++.+++.-   |-|.                     -+|+.  ..|=....+..|.
T Consensus        86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVAN---GGI~---------------------Thpd~GR~kLNl~tM~psL~  141 (305)
T PF07433_consen   86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVAN---GGIE---------------------THPDSGRAKLNLDTMQPSLV  141 (305)
T ss_pred             CCcEEEeEecCCCcChhhEEEcCCCCEEEEEc---CCCc---------------------cCcccCceecChhhcCCceE
Confidence            54446666777766677889999997666542   2221                     12222  1233444566777


Q ss_pred             EEECCCCeEEEEEe----CCCCCEEEEEEcCCCCEEEEEeC------C--eEEEEeCCCCceEEEec-------cCCCce
Q 047260          658 IFDIETDRQTHSLQ----GHAELVNYICWDTNGDYLASVSQ------N--LVKVWSMASGECIQELS-------SNGNQF  718 (784)
Q Consensus       658 IwDl~t~~~i~~l~----~h~~~V~sl~~spdg~~Lasgsd------d--~I~IwDl~t~~~i~~l~-------~~~~~I  718 (784)
                      +.|..+++.+....    .|...|..+++.++|..++..-.      .  .|.+++..  ..+..+.       .-...+
T Consensus       142 ~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~  219 (305)
T PF07433_consen  142 YLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQWRRLNGYI  219 (305)
T ss_pred             EEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCChHHHHhhCCce
Confidence            78888888776633    37778999999999988877641      1  34555433  3333332       234678


Q ss_pred             EEEEEecCCCEEEEEECC-CeEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEEC
Q 047260          719 HSCVFHPSYSTLLVVGGI-SSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASH  776 (784)
Q Consensus       719 ~sl~fspdg~~L~s~s~d-g~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs~  776 (784)
                      -+|++++++..+++.+-- +.+.+||..++..+....-. .+..++..+++ +++|.+.
T Consensus       220 gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~-D~cGva~~~~~-f~~ssG~  276 (305)
T PF07433_consen  220 GSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP-DACGVAPTDDG-FLVSSGQ  276 (305)
T ss_pred             EEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccC-ceeeeeecCCc-eEEeCCC
Confidence            999999999988777665 68999999999987544332 35566666655 5555443

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.71  E-value=3.8e-06  Score=94.48  Aligned_cols=253  Identities=9%  Similarity=0.024  Sum_probs=153.8

Q ss_pred             CCEEEEEeCCCeEEEEECCCCceeeecCCCCC----------CeE-EEEEccCCCEEEEEeCCCeEEEEcCCCCcceeee
Q 047260          519 GKLLASSGHDRKVVLWNMDTLQTESTPEDHKS----------VVT-DVRFRPNSSQLATASVDKSVRLWDAANPNFCSQA  587 (784)
Q Consensus       519 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~----------~It-~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~  587 (784)
                      +..+++++.+|.|.-+|.++++.+........          .+. .+..  ++..++.++.++.+..+|.++++..-+ 
T Consensus        69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~-  145 (394)
T PRK11138         69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQ-  145 (394)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCccc-
Confidence            55777788889999999999988876543220          000 1111  355778888999999999998874332 


Q ss_pred             ccCCCCCeEE-EEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCCeeEEE----Eec--CCCEEEEEECCCcEEEEE
Q 047260          588 YTGHSSPIMS-LDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVR----FQP--RIGQLLAAASDKVVSIFD  660 (784)
Q Consensus       588 ~~~h~~~V~s-l~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v~~v~----fsp--~~~~Ll~~s~Dg~I~IwD  660 (784)
                      .... ..+.+ ..+. + . .++.+..++.|..+|.++++.+..+......+.    .+|  .++.+++++.++.+..+|
T Consensus       146 ~~~~-~~~~ssP~v~-~-~-~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d  221 (394)
T PRK11138        146 TKVA-GEALSRPVVS-D-G-LVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVL  221 (394)
T ss_pred             ccCC-CceecCCEEE-C-C-EEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEE
Confidence            2211 22221 1122 2 2 455677789999999999888766653211110    011  235677888899999999


Q ss_pred             CCCCeEEEEEeCCCC-------CEEEEEEcC---CCCEEEEEeCCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEE
Q 047260          661 IETDRQTHSLQGHAE-------LVNYICWDT---NGDYLASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTL  730 (784)
Q Consensus       661 l~t~~~i~~l~~h~~-------~V~sl~~sp---dg~~Lasgsdd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L  730 (784)
                      ..+++.+........       ....+..+|   ++.+++++.++.+..+|..+|+.+.+.....  ...+..  .+..|
T Consensus       222 ~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~--~~~~~~--~~~~v  297 (394)
T PRK11138        222 MEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGS--VNDFAV--DGGRI  297 (394)
T ss_pred             ccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCC--ccCcEE--ECCEE
Confidence            999987665431110       011111122   4444444556699999999998876654221  112222  45678


Q ss_pred             EEEECCCeEEEEECCCCceEEec-ccC-CceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          731 LVVGGISSLELWNMAENKSMTIA-AHE-NIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       731 ~s~s~dg~I~Iwdl~~~~~~~~~-~h~-~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      ++++.+|.|..+|..+++.+-.. ... ....+..+  .+.+|+.++.||.|.+.|
T Consensus       298 y~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld  351 (394)
T PRK11138        298 YLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWIN  351 (394)
T ss_pred             EEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEE
Confidence            88999999999999998765211 111 11222222  245677778888877653

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.69  E-value=3.2e-05  Score=81.02  Aligned_cols=212  Identities=10%  Similarity=0.069  Sum_probs=137.1

Q ss_pred             EEEEEcc-CCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEc-CCCCcEEEEEeCCCeEEEEeCCCCeeEEe
Q 047260          553 TDVRFRP-NSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFH-PKKTDLFCFCDNDNEIQYWSINPFLCTHI  630 (784)
Q Consensus       553 t~i~fsp-dg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~s-p~~~~ll~sgs~dg~I~iwDl~~~~~~~~  630 (784)
                      .++.|.+ ++.++++-...+.|..|+..++........+    ...+.+. ++ . .++.+.. +.+.++|+.+.+....
T Consensus         3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~----~~G~~~~~~~-g-~l~v~~~-~~~~~~d~~~g~~~~~   75 (246)
T PF08450_consen    3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG----PNGMAFDRPD-G-RLYVADS-GGIAVVDPDTGKVTVL   75 (246)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS----EEEEEEECTT-S-EEEEEET-TCEEEEETTTTEEEEE
T ss_pred             cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC----CceEEEEccC-C-EEEEEEc-CceEEEecCCCcEEEE
Confidence            3678998 6766777667899999999886533322222    6777777 55 3 3444554 4455559887644332


Q ss_pred             ec--------CCeeEEEEecCCCEEEEEECC--------CcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-
Q 047260          631 TK--------GGTAQVRFQPRIGQLLAAASD--------KVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVS-  693 (784)
Q Consensus       631 ~~--------~~v~~v~fsp~~~~Ll~~s~D--------g~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgs-  693 (784)
                      ..        ...+.+++.++|+..++....        |.|..++.. ++...... .-...+.|+|+|+++.|+.+. 
T Consensus        76 ~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds  153 (246)
T PF08450_consen   76 ADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADS  153 (246)
T ss_dssp             EEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEET
T ss_pred             eeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeeccc
Confidence            22        235779999998866655543        558888877 55443333 355678999999999887665 


Q ss_pred             -CCeEEEEeCCCCc-------eEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE-EecccCCceEEEEE
Q 047260          694 -QNLVKVWSMASGE-------CIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQ  764 (784)
Q Consensus       694 -dd~I~IwDl~t~~-------~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slaf  764 (784)
                       .+.|..|++....       .+..+.........+++..+|+..++....+.|.++|.. ++.+ .+.-....+++++|
T Consensus       154 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~f  232 (246)
T PF08450_consen  154 FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAF  232 (246)
T ss_dssp             TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEE
T ss_pred             ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEE
Confidence             3389888886322       122222333347889999999887777788999999988 6655 34433468999999


Q ss_pred             e-CCCCEEEEE
Q 047260          765 S-PVTGMVASA  774 (784)
Q Consensus       765 s-pdg~~LaSg  774 (784)
                      . ++.+.|+..
T Consensus       233 gg~~~~~L~vT  243 (246)
T PF08450_consen  233 GGPDGKTLYVT  243 (246)
T ss_dssp             ESTTSSEEEEE
T ss_pred             ECCCCCEEEEE
Confidence            5 665555443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.65  E-value=7.3e-06  Score=84.39  Aligned_cols=197  Identities=13%  Similarity=0.135  Sum_probs=117.7

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCC-------CCCCeEEEEEccC------CCEEEEEeCCCeEEE
Q 047260          509 KVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPED-------HKSVVTDVRFRPN------SSQLATASVDKSVRL  575 (784)
Q Consensus       509 ~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~-------h~~~It~i~fspd------g~~Latgs~Dg~I~I  575 (784)
                      .=..++||||+.+||.+...|+|+|||+.. ..+..+..       -...|..+.|.+.      ...|++-..+|.++-
T Consensus        45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S  123 (282)
T PF15492_consen   45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS  123 (282)
T ss_pred             hheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence            356789999999999999999999999985 33333321       2356777777652      225677778888887


Q ss_pred             EcCCCC---c-ceeee--c-cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCCeeEEEEecCCCEEE
Q 047260          576 WDAANP---N-FCSQA--Y-TGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLL  648 (784)
Q Consensus       576 Wdl~~~---~-~~~~~--~-~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v~~v~fsp~~~~Ll  648 (784)
                      |-+..+   + .....  + ..+...|.++.++|..+.+++.|.....-..        ......++++-++-.+..+..
T Consensus       124 y~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~--------s~a~~~GLtaWRiL~~~Pyyk  195 (282)
T PF15492_consen  124 YLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGM--------SKASSCGLTAWRILSDSPYYK  195 (282)
T ss_pred             EEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCcc--------ccccccCceEEEEcCCCCcEE
Confidence            775321   1 11111  1 2346789999999998866665554332111        111112233333222222211


Q ss_pred             --EEECCCc------EEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEeCCCCceEEEeccC
Q 047260          649 --AAASDKV------VSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVS-QNLVKVWSMASGECIQELSSN  714 (784)
Q Consensus       649 --~~s~Dg~------I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgs-dd~I~IwDl~t~~~i~~l~~~  714 (784)
                        ....|+.      ..+|.+-+.+...........|..+..+|||.+||+.. .|.|.+|++.+-+...++..+
T Consensus       196 ~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~  270 (282)
T PF15492_consen  196 QVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD  270 (282)
T ss_pred             EccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence              1111211      12333322222222223567899999999999999988 669999999987777666543

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.65  E-value=9.8e-07  Score=93.82  Aligned_cols=244  Identities=13%  Similarity=0.117  Sum_probs=152.7

Q ss_pred             eeEEeEeecCCCceEEEEEcCCCC-EEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCC-CEEEEEeCCCeEE
Q 047260          497 FCEVGCIRSRNSKVTCCHFSSDGK-LLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNS-SQLATASVDKSVR  574 (784)
Q Consensus       497 ~~~i~~l~~H~~~V~~l~fspdg~-~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg-~~Latgs~Dg~I~  574 (784)
                      |.....+.+|...|.+++|||..+ +|..++.+.+|+|.|+++...+..+..| ..+++++|.-|. ++|+.|...|.|.
T Consensus       183 fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vl  261 (463)
T KOG1645|consen  183 FKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVL  261 (463)
T ss_pred             cchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEE
Confidence            334446778899999999999777 7888999999999999999998888877 889999999854 5778888899999


Q ss_pred             EEcCCCCcceeeeccC--CCCCeEEEEEcC------CCCcEEEEEeCCCeEEEEeCC----CCeeEEeec--CCeeEEEE
Q 047260          575 LWDAANPNFCSQAYTG--HSSPIMSLDFHP------KKTDLFCFCDNDNEIQYWSIN----PFLCTHITK--GGTAQVRF  640 (784)
Q Consensus       575 IWdl~~~~~~~~~~~~--h~~~V~sl~~sp------~~~~ll~sgs~dg~I~iwDl~----~~~~~~~~~--~~v~~v~f  640 (784)
                      |||++..+.....+.+  ...+|..|+.-+      .+. +++....  .+..|.+.    ...++...+  +...++.+
T Consensus       262 vyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gg-lLv~~lt--~l~f~ei~~s~~~~p~vlele~pG~cismqy  338 (463)
T KOG1645|consen  262 VYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGG-LLVFALT--VLQFYEIVFSAECLPCVLELEPPGICISMQY  338 (463)
T ss_pred             EEEccCCCchHhhhhhhhccCcceeecccCccccccccc-eEEeeeh--hhhhhhhhccccCCCcccccCCCcceeeeee
Confidence            9999987654444433  234555544332      222 3333222  24455543    222222333  34445556


Q ss_pred             ecCCCEEEEEECCC-------cE-EEEECCCCeEEEEEe-CC-CCCE------EEEEEcCCCCEEEEEeCC--eEEEEeC
Q 047260          641 QPRIGQLLAAASDK-------VV-SIFDIETDRQTHSLQ-GH-AELV------NYICWDTNGDYLASVSQN--LVKVWSM  702 (784)
Q Consensus       641 sp~~~~Ll~~s~Dg-------~I-~IwDl~t~~~i~~l~-~h-~~~V------~sl~~spdg~~Lasgsdd--~I~IwDl  702 (784)
                      ++..+++++.....       .| .-.|..+|.++...+ .+ ...-      ..+.-.++..+|+..+++  .+.+||.
T Consensus       339 ~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~  418 (463)
T KOG1645|consen  339 HGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDP  418 (463)
T ss_pred             cCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEecc
Confidence            66667766665421       11 112333343333222 12 1111      112223566777766654  9999999


Q ss_pred             CCCceEEEeccCCCceEEEEEe-cCCCEEEEEECCCeEEEEECC
Q 047260          703 ASGECIQELSSNGNQFHSCVFH-PSYSTLLVVGGISSLELWNMA  745 (784)
Q Consensus       703 ~t~~~i~~l~~~~~~I~sl~fs-pdg~~L~s~s~dg~I~Iwdl~  745 (784)
                      .+++.+.++... .+|.+++.. -++.-++..-.|..++||..+
T Consensus       419 ~s~evvQ~l~~~-epv~Dicp~~~n~~syLa~LTd~~v~Iyk~e  461 (463)
T KOG1645|consen  419 HSFEVVQTLALS-EPVLDICPNDTNGSSYLALLTDDRVHIYKNE  461 (463)
T ss_pred             chhheeeecccC-cceeecceeecCCcchhhheecceEEEEecC
Confidence            999999998765 667776654 344445555556678888654

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.61  E-value=5.2e-07  Score=96.93  Aligned_cols=236  Identities=16%  Similarity=0.163  Sum_probs=166.9

Q ss_pred             CCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCCCEEEEEeC-C
Q 047260          450 IDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGH-D  528 (784)
Q Consensus       450 ~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~-D  528 (784)
                      ...+.-.+|.|+.++.|--..                       ..-..-+..++.|.+.|.+++.+-|+.+++|.+. |
T Consensus        19 ka~fiiqASlDGh~KFWkKs~-----------------------isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~D   75 (558)
T KOG0882|consen   19 KAKFIIQASLDGHKKFWKKSR-----------------------ISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPD   75 (558)
T ss_pred             hhheEEeeecchhhhhcCCCC-----------------------ccceeehhhhHHHHHHHHhhhccccceeEeeccCcc
Confidence            445566788999999882211                       1112346678889999999999999999999777 9


Q ss_pred             CeEEEEECCCCceeeecCC--CCCCeEEEEEccCC--C-EEEE-EeCCCeEEEEcCCCCcc-eeeeccCCCCCeEEEEEc
Q 047260          529 RKVVLWNMDTLQTESTPED--HKSVVTDVRFRPNS--S-QLAT-ASVDKSVRLWDAANPNF-CSQAYTGHSSPIMSLDFH  601 (784)
Q Consensus       529 g~I~IWd~~t~~~~~~l~~--h~~~It~i~fspdg--~-~Lat-gs~Dg~I~IWdl~~~~~-~~~~~~~h~~~V~sl~~s  601 (784)
                      ..++++|+++...+.-++-  -.+.+.++  ...|  . .|+. .-.++.|.|+|-..... ......-|..+|.++.++
T Consensus        76 hs~KvfDvEn~DminmiKL~~lPg~a~wv--~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~  153 (558)
T KOG0882|consen   76 HSVKVFDVENFDMINMIKLVDLPGFAEWV--TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYN  153 (558)
T ss_pred             cceeEEEeeccchhhhcccccCCCceEEe--cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEee
Confidence            9999999987655533321  22222221  2222  1 2333 34578999999775442 333344689999999999


Q ss_pred             CCCCcEEEEEeCCCeEEEEeCCC-Ce-----eE------------EeecCCeeEEEEecCCCEEEEEECCCcEEEEECCC
Q 047260          602 PKKTDLFCFCDNDNEIQYWSINP-FL-----CT------------HITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIET  663 (784)
Q Consensus       602 p~~~~ll~sgs~dg~I~iwDl~~-~~-----~~------------~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t  663 (784)
                      +.+. .+++.+..|.|..|.... .+     ..            ...+....++.|+|++..+.+-..|..|++++.++
T Consensus       154 qa~D-s~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~Kt  232 (558)
T KOG0882|consen  154 QAGD-SAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKT  232 (558)
T ss_pred             cccc-ceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEecc
Confidence            9876 677888899999998873 10     10            11235567899999999999999999999999998


Q ss_pred             CeEEEEEe--------------------------------CCCC-CEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEEE
Q 047260          664 DRQTHSLQ--------------------------------GHAE-LVNYICWDTNGDYLASVSQNLVKVWSMASGECIQE  710 (784)
Q Consensus       664 ~~~i~~l~--------------------------------~h~~-~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~~  710 (784)
                      ++.+..+.                                .|.. .-+.++|+..|++|+-++-=-|+|.++.++.+++.
T Consensus       233 GklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~gikvin~~tn~v~ri  312 (558)
T KOG0882|consen  233 GKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVINLDTNTVVRI  312 (558)
T ss_pred             chhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEEeecCeEEEE
Confidence            87655432                                1111 23557889999999988866799999999888876


Q ss_pred             e
Q 047260          711 L  711 (784)
Q Consensus       711 l  711 (784)
                      +
T Consensus       313 ~  313 (558)
T KOG0882|consen  313 L  313 (558)
T ss_pred             e
Confidence            6

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.61  E-value=1.5e-05  Score=82.15  Aligned_cols=219  Identities=17%  Similarity=0.209  Sum_probs=132.6

Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCC--ceeeecC---CCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceee
Q 047260          512 CCHFSSDGKLLASSGHDRKVVLWNMDTL--QTESTPE---DHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQ  586 (784)
Q Consensus       512 ~l~fspdg~~Lasgs~Dg~I~IWd~~t~--~~~~~l~---~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~  586 (784)
                      .++.+.||++||+- .|..|.|=..++.  ..+.+..   ...-.=..++|+||+..||.+...|+|++||+.... +..
T Consensus         2 ~~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~   79 (282)
T PF15492_consen    2 HLALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFV   79 (282)
T ss_pred             ceeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce-eEE
Confidence            35677899988865 4667777655431  1222222   222335779999999999999999999999998533 211


Q ss_pred             ec------cCCCCCeEEEEEcCCC-----CcEEEEEeCCCeEEEEeCC-----CCeeEEe------ecCCeeEEEEecCC
Q 047260          587 AY------TGHSSPIMSLDFHPKK-----TDLFCFCDNDNEIQYWSIN-----PFLCTHI------TKGGTAQVRFQPRI  644 (784)
Q Consensus       587 ~~------~~h~~~V~sl~~sp~~-----~~ll~sgs~dg~I~iwDl~-----~~~~~~~------~~~~v~~v~fsp~~  644 (784)
                      .-      ......|..+.|.+..     ...|++-..+|.++-|-+.     .....+.      +..+|.++.++|..
T Consensus        80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h  159 (282)
T PF15492_consen   80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH  159 (282)
T ss_pred             cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence            11      1123567777776543     3345555567777766542     2222233      23688999999999


Q ss_pred             CEEEEEECCCc-----------EEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC------eEEEEeCCCCce
Q 047260          645 GQLLAAASDKV-----------VSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN------LVKVWSMASGEC  707 (784)
Q Consensus       645 ~~Ll~~s~Dg~-----------I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd------~I~IwDl~t~~~  707 (784)
                      +.|++++....           +..|.+-++.                  |..+.+....++      +..+|.+-+.+.
T Consensus       160 ~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~------------------Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~  221 (282)
T PF15492_consen  160 RLLLVGGCEQNQDGMSKASSCGLTAWRILSDS------------------PYYKQVTSSEDDITASSKRRGLLRIPSFKF  221 (282)
T ss_pred             CEEEEeccCCCCCccccccccCceEEEEcCCC------------------CcEEEccccCccccccccccceeeccceee
Confidence            98888876322           2222221111                  111111111111      123343333322


Q ss_pred             EEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE
Q 047260          708 IQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM  750 (784)
Q Consensus       708 i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~  750 (784)
                      ..........|..+..+||+..|++...+|.|.+|++..-+..
T Consensus       222 fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~  264 (282)
T PF15492_consen  222 FSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQ  264 (282)
T ss_pred             eeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhh
Confidence            2222345678999999999999999999999999999876554

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.61  E-value=9.6e-07  Score=94.08  Aligned_cols=157  Identities=15%  Similarity=0.188  Sum_probs=110.5

Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEECCCCce----eeecCCCCCCeEEEEEccCCCEEEEE---eCCCeEEEEcCCCCc
Q 047260          510 VTCCHFSSDGKLLASSGHDRKVVLWNMDTLQT----ESTPEDHKSVVTDVRFRPNSSQLATA---SVDKSVRLWDAANPN  582 (784)
Q Consensus       510 V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~----~~~l~~h~~~It~i~fspdg~~Latg---s~Dg~I~IWdl~~~~  582 (784)
                      +..+.+++++++||++..+....++++.....    .... .-...-+++.|..+...+..+   ++...+.+|....  
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~-~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~--  141 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS-CVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS--  141 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe-ecccCcceeeeeeccceEEEEeecCCceeeeeecccc--
Confidence            55566788899999998888877777654332    2221 223334455555555444444   4445566666654  


Q ss_pred             ceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEe----ecCCeeEEEEecCCCEEEEEECCCcEEE
Q 047260          583 FCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHI----TKGGTAQVRFQPRIGQLLAAASDKVVSI  658 (784)
Q Consensus       583 ~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~----~~~~v~~v~fsp~~~~Ll~~s~Dg~I~I  658 (784)
                      .+.....||-+.++.|+|+||+. ++++++.|..|++-.......+..    |+.-|..+++.++ ..|++++.|++|++
T Consensus       142 ~~~~~~lGhvSml~dVavS~D~~-~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~  219 (390)
T KOG3914|consen  142 GRCEPILGHVSMLLDVAVSPDDQ-FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRL  219 (390)
T ss_pred             cCcchhhhhhhhhheeeecCCCC-EEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEE
Confidence            34566779999999999999986 888999999999988765433322    4456777777765 45899999999999


Q ss_pred             EECCCCeEEEEEe
Q 047260          659 FDIETDRQTHSLQ  671 (784)
Q Consensus       659 wDl~t~~~i~~l~  671 (784)
                      ||+++++.++++.
T Consensus       220 Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  220 WDITSGKLLDTCD  232 (390)
T ss_pred             EecccCCcccccc
Confidence            9999999887664

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.61  E-value=3.8e-07  Score=91.93  Aligned_cols=193  Identities=10%  Similarity=0.123  Sum_probs=112.6

Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEECCCCce------------eeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEc
Q 047260          510 VTCCHFSSDGKLLASSGHDRKVVLWNMDTLQT------------ESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWD  577 (784)
Q Consensus       510 V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~------------~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWd  577 (784)
                      |+.+.|+.+ ..|+++..++.+..+...++.+            .+.+..|.++-.+-..+-.++.++++..||.+.+++
T Consensus        39 ~~~~~~v~~-~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s  117 (319)
T KOG4714|consen   39 LSKVSLSAE-YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS  117 (319)
T ss_pred             EEEeechhh-heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence            555555533 3566666666555554433222            222223433333333333567799999999999999


Q ss_pred             CCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEe-----CCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEE
Q 047260          578 AANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCD-----NDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLA  649 (784)
Q Consensus       578 l~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs-----~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~  649 (784)
                      .+...............-.+.++...++ ++.++.     .-+..+.|+++..+.+...+   ..+.+++-+|....+++
T Consensus       118 ~~~~~~~~~~i~~~~~~~as~~~~~~~~-~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~  196 (319)
T KOG4714|consen  118 TDKDLALMSRIPSIHSGSASRKICRHGN-SILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVC  196 (319)
T ss_pred             chHHHhhhhhcccccccccccceeeccc-EEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEE
Confidence            8752211111111111111222222222 222221     12456677777644432222   34888888887776655


Q ss_pred             E-ECCCcEEEEECCCCe-EEEEEeCCCCCEEEEEEcC-CCCEEEEEeCC-eEEEEeCCC
Q 047260          650 A-ASDKVVSIFDIETDR-QTHSLQGHAELVNYICWDT-NGDYLASVSQN-LVKVWSMAS  704 (784)
Q Consensus       650 ~-s~Dg~I~IwDl~t~~-~i~~l~~h~~~V~sl~~sp-dg~~Lasgsdd-~I~IwDl~t  704 (784)
                      + +.||.|.+||.++.. +...++.|+.+|..+-|+| ++..|+++++| .+.-||..+
T Consensus       197 cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  197 CGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             EecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            4 558999999999874 3344567999999999998 56677777755 999999765

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.60  E-value=6.8e-07  Score=103.08  Aligned_cols=263  Identities=16%  Similarity=0.184  Sum_probs=166.1

Q ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCC-CCeEEEEEccCCCEEEEEeCC-------CeEEEEc
Q 047260          506 RNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHK-SVVTDVRFRPNSSQLATASVD-------KSVRLWD  577 (784)
Q Consensus       506 H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~-~~It~i~fspdg~~Latgs~D-------g~I~IWd  577 (784)
                      .-+.|.+++|.+....+..|+..|.+.-+-....+....+..|. ..|..+.....  -+++.+..       +-+-++|
T Consensus        53 ~~G~vS~v~fd~~eel~w~G~~gG~stS~~~s~~~~yssf~v~s~~~v~~~~~~~~--~i~~ls~~alr~~~r~gl~~~~  130 (1118)
T KOG1275|consen   53 SYGTVSSVHFDLHEELLWRGSSGGHSTSLLLSHRTGYSSFQVHSIDGVRRIEPTES--GIFTLSKTALRATTRQGLPVFD  130 (1118)
T ss_pred             ccccccccccCchHHhheecccCCceeeeecccccceEEEEEeccchhhhhhhhhh--hheeeeHHHhhhhhccCceeec
Confidence            44568888888777777777777766554444333333333232 11111111111  12222111       1123333


Q ss_pred             CCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCCe-eEEEEecCCCEEEEEECCCcE
Q 047260          578 AANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGT-AQVRFQPRIGQLLAAASDKVV  656 (784)
Q Consensus       578 l~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v-~~v~fsp~~~~Ll~~s~Dg~I  656 (784)
                      ........        -...+..   +...++.|+--..+..+|+++.+..+...-.. .+..+..+++.+++|...|+|
T Consensus       131 ~~~~s~~~--------M~~~~~~---~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V  199 (1118)
T KOG1275|consen  131 FTCPSMTK--------MASSLHM---GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTV  199 (1118)
T ss_pred             ccCCCHHH--------HHHHhcc---CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceE
Confidence            33221000        0111111   23356667777788889999877766655222 123334456788888899999


Q ss_pred             EEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe----------CCeEEEEeCCCCceEEEeccCCCceEEEEEecC
Q 047260          657 SIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVS----------QNLVKVWSMASGECIQELSSNGNQFHSCVFHPS  726 (784)
Q Consensus       657 ~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgs----------dd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspd  726 (784)
                      .+-|.++.+.++++..|.+.|..+..  .|++|++|+          |..|+|||++.-+.+.-+.-+.++ .-+.|+|.
T Consensus       200 ~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Ps  276 (1118)
T KOG1275|consen  200 FLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPS  276 (1118)
T ss_pred             EeecCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhccc
Confidence            99999999999999999999987654  588888876          237999999987766655544333 55678887


Q ss_pred             C-CEEEEEECCCeEEEEECC---CCceE--EecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          727 Y-STLLVVGGISSLELWNMA---ENKSM--TIAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       727 g-~~L~s~s~dg~I~Iwdl~---~~~~~--~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      - ..+++++..|...+-|..   +...-  .+......+.++++++.+..++.|..+|.|.+|-
T Consensus       277 l~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  277 LTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             ccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            5 358888889999999843   32211  2223344599999999999999999999999993

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.59  E-value=5.7e-06  Score=88.11  Aligned_cols=249  Identities=13%  Similarity=0.145  Sum_probs=150.5

Q ss_pred             EEEEECCCCceeeecCCCCCCeEEEEEccCCC-EEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEE
Q 047260          531 VVLWNMDTLQTESTPEDHKSVVTDVRFRPNSS-QLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFC  609 (784)
Q Consensus       531 I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~-~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~  609 (784)
                      |++.+..+.+....+..|...|.+++|+|..+ ++..++.+..|+|.|+++.. +...+..+ ..+++++|.-++.+++.
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~-~vssy~a~-~~~wSC~wDlde~h~IY  252 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC-VVSSYIAY-NQIWSCCWDLDERHVIY  252 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccce-eeeheecc-CCceeeeeccCCcceeE
Confidence            67777767777777778889999999999766 78889999999999999865 66666666 78999999999999999


Q ss_pred             EEeCCCeEEEEeCCCCeeEE------eecCCeeEEE------EecCCCEEEEEECCCcEEEEECCC--CeEEEEEe-CCC
Q 047260          610 FCDNDNEIQYWSINPFLCTH------ITKGGTAQVR------FQPRIGQLLAAASDKVVSIFDIET--DRQTHSLQ-GHA  674 (784)
Q Consensus       610 sgs~dg~I~iwDl~~~~~~~------~~~~~v~~v~------fsp~~~~Ll~~s~Dg~I~IwDl~t--~~~i~~l~-~h~  674 (784)
                      .|..+|.|.|||++..+...      ....++..++      ..+.++.++....+  +..|++.-  +.....++ +..
T Consensus       253 aGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~p  330 (463)
T KOG1645|consen  253 AGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPP  330 (463)
T ss_pred             EeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCC
Confidence            99999999999998532211      1113333333      22334444444332  33444321  11111111 123


Q ss_pred             CCEEEEEEcCCCCEE-EEEeCC----eEE----EEeCCCCceEEEecc-C-CCce------EEEEEecCCCEEEEEECC-
Q 047260          675 ELVNYICWDTNGDYL-ASVSQN----LVK----VWSMASGECIQELSS-N-GNQF------HSCVFHPSYSTLLVVGGI-  736 (784)
Q Consensus       675 ~~V~sl~~spdg~~L-asgsdd----~I~----IwDl~t~~~i~~l~~-~-~~~I------~sl~fspdg~~L~s~s~d-  736 (784)
                      +...++..++..+.+ ++.-.+    .++    --|..+|..+..... + +..-      ..+.-.++..+|+..+.+ 
T Consensus       331 G~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~t  410 (463)
T KOG1645|consen  331 GICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDST  410 (463)
T ss_pred             cceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCc
Confidence            444455555533433 333221    111    123334443332221 1 1111      112223444555555444 


Q ss_pred             CeEEEEECCCCceEEecccCCceEEEEEeCC--CCEEEEEECCCcEEEeC
Q 047260          737 SSLELWNMAENKSMTIAAHENIISALAQSPV--TGMVASASHDSSVKLWK  784 (784)
Q Consensus       737 g~I~Iwdl~~~~~~~~~~h~~~V~slafspd--g~~LaSgs~DG~V~IWd  784 (784)
                      +.+.+||..+.+.+.-...+.+|.+++....  +.+|++-. |..|+||+
T Consensus       411 n~lil~D~~s~evvQ~l~~~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk  459 (463)
T KOG1645|consen  411 NELILQDPHSFEVVQTLALSEPVLDICPNDTNGSSYLALLT-DDRVHIYK  459 (463)
T ss_pred             ceeEEeccchhheeeecccCcceeecceeecCCcchhhhee-cceEEEEe
Confidence            6899999999998866666788988886643  33666654 55677764

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.58  E-value=6.3e-07  Score=90.33  Aligned_cols=164  Identities=12%  Similarity=0.133  Sum_probs=108.3

Q ss_pred             EEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCce-eeecCCCCCCeEEEEEccCCCEEEEEeC-----CCe
Q 047260          499 EVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQT-ESTPEDHKSVVTDVRFRPNSSQLATASV-----DKS  572 (784)
Q Consensus       499 ~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~-~~~l~~h~~~It~i~fspdg~~Latgs~-----Dg~  572 (784)
                      .+.++..|.+.-.+-+.+-.++.++++..||.+.+++.+.... ...+..-...-.+.++...++.|.++..     -+.
T Consensus        81 ~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~  160 (319)
T KOG4714|consen   81 PFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDN  160 (319)
T ss_pred             ceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccc
Confidence            3444455666555555556677899999999999999875211 1111111111122333334544444321     234


Q ss_pred             EEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe----eEEeecCCeeEEEEecCC-CEE
Q 047260          573 VRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFL----CTHITKGGTAQVRFQPRI-GQL  647 (784)
Q Consensus       573 I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~----~~~~~~~~v~~v~fsp~~-~~L  647 (784)
                      .++|+++..+......... ..|.+++-+|....++++|+.||.+-+||.+...    .+..++.++..+-|+|.. .+|
T Consensus       161 ~~a~~~~p~~t~~~~~~~~-~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~L  239 (319)
T KOG4714|consen  161 FYANTLDPIKTLIPSKKAL-DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHL  239 (319)
T ss_pred             eeeeccccccccccccccc-ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchhe
Confidence            5677776544222222222 3499999999999999999999999999998753    335567889999999864 679


Q ss_pred             EEEECCCcEEEEECCC
Q 047260          648 LAAASDKVVSIFDIET  663 (784)
Q Consensus       648 l~~s~Dg~I~IwDl~t  663 (784)
                      ++++.||.+-.||..+
T Consensus       240 ft~sedGslw~wdas~  255 (319)
T KOG4714|consen  240 FTCSEDGSLWHWDAST  255 (319)
T ss_pred             eEecCCCcEEEEcCCC
Confidence            9999999999999765

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.57  E-value=1.6e-05  Score=82.22  Aligned_cols=210  Identities=12%  Similarity=0.048  Sum_probs=131.9

Q ss_pred             CCCeEEEEcCCCCcceeeeccCC-CCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec--CCeeEEEEecCCC
Q 047260          569 VDKSVRLWDAANPNFCSQAYTGH-SSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK--GGTAQVRFQPRIG  645 (784)
Q Consensus       569 ~Dg~I~IWdl~~~~~~~~~~~~h-~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~--~~v~~v~fsp~~~  645 (784)
                      .+|+|..||..+++..-..-.+. .....+..+ +++. .+++++.++.|..||..+++.+....  ..+... ....++
T Consensus         1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~~~~-~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~~   77 (238)
T PF13360_consen    1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATAV-PDGG-RVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA-PVVDGG   77 (238)
T ss_dssp             -TSEEEEEETTTTEEEEEEECSSSCSSEEETEE-EETT-EEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG-EEEETT
T ss_pred             CCCEEEEEECCCCCEEEEEECCCCCCCccceEE-EeCC-EEEEEcCCCEEEEEECCCCCEEEEeeccccccce-eeeccc
Confidence            36889999998877443332211 122222222 2334 45556789999999999888776554  222221 234557


Q ss_pred             EEEEEECCCcEEEEECCCCeEEEEE-eCCC---CCEEEEEEcCCCCEEEEEe-CCeEEEEeCCCCceEEEeccCCCc---
Q 047260          646 QLLAAASDKVVSIFDIETDRQTHSL-QGHA---ELVNYICWDTNGDYLASVS-QNLVKVWSMASGECIQELSSNGNQ---  717 (784)
Q Consensus       646 ~Ll~~s~Dg~I~IwDl~t~~~i~~l-~~h~---~~V~sl~~spdg~~Lasgs-dd~I~IwDl~t~~~i~~l~~~~~~---  717 (784)
                      .+++++.++.|+.+|.++++.+..+ ....   ..........++..++++. ++.|..+|+++|+.+.........   
T Consensus        78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~  157 (238)
T PF13360_consen   78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSS  157 (238)
T ss_dssp             EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS-
T ss_pred             ccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCc
Confidence            7888888899999999999998884 3221   1112222223366666666 669999999999998888664322   


Q ss_pred             -------eEEEEEecCCCEEEEEECCCeEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          718 -------FHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       718 -------I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                             +..-.+..++ .+++++.++.+..+|+.+++.+. ......+..+ ...++..|++++.|+.|.+||
T Consensus       158 ~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w-~~~~~~~~~~-~~~~~~~l~~~~~~~~l~~~d  228 (238)
T PF13360_consen  158 PISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLW-SKPISGIYSL-PSVDGGTLYVTSSDGRLYALD  228 (238)
T ss_dssp             -EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEE-EECSS-ECEC-EECCCTEEEEEETTTEEEEEE
T ss_pred             ceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEE-EecCCCccCC-ceeeCCEEEEEeCCCEEEEEE
Confidence                   1122222334 78888888864444999998763 2223333332 356678888888999999886

...

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.57  E-value=3.6e-08  Score=112.45  Aligned_cols=200  Identities=13%  Similarity=0.231  Sum_probs=151.9

Q ss_pred             CceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCC-eE
Q 047260          539 LQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDN-EI  617 (784)
Q Consensus       539 ~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg-~I  617 (784)
                      .+..++|..|....+|++|+-+.+.|+.|+..|.|++|++.++. ......+|.++|+.+.-+.+|..++.+++... -.
T Consensus      1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~-~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGS-MEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred             cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcc-ccccccccccccccccccCCcceeeeeccccCchH
Confidence            45667788899999999999999999999999999999999977 56677899999999999999997777766555 67


Q ss_pred             EEEeCCCC-eeEEeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEE-eC---CCCCEEEEEEcCCCCEEEEE
Q 047260          618 QYWSINPF-LCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSL-QG---HAELVNYICWDTNGDYLASV  692 (784)
Q Consensus       618 ~iwDl~~~-~~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l-~~---h~~~V~sl~~spdg~~Lasg  692 (784)
                      .+|+.... ...+.+ ....++.|+.....-++|+......+||+.++.++.++ .+   ....-+++.|+|+..+++--
T Consensus      1170 aLW~~~s~~~~~Hsf-~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIlnd 1248 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSF-DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILND 1248 (1516)
T ss_pred             HHhccccccCccccc-cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEeeC
Confidence            88998752 222222 34567788777666667777788999999998766552 22   22234778899988877642


Q ss_pred             eCCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE
Q 047260          693 SQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM  750 (784)
Q Consensus       693 sdd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~  750 (784)
                          =.+||++..+.++.|.... ....-.|+|.|.-++.-+     .|||+++.+.+
T Consensus      1249 ----GvLWDvR~~~aIh~FD~ft-~~~~G~FHP~g~eVIINS-----EIwD~RTF~lL 1296 (1516)
T KOG1832|consen 1249 ----GVLWDVRIPEAIHRFDQFT-DYGGGGFHPSGNEVIINS-----EIWDMRTFKLL 1296 (1516)
T ss_pred             ----ceeeeeccHHHHhhhhhhe-ecccccccCCCceEEeec-----hhhhhHHHHHH
Confidence                2589999988888776543 223447999998887755     58999887655

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.52  E-value=0.00012  Score=74.40  Aligned_cols=256  Identities=15%  Similarity=0.138  Sum_probs=136.7

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEE
Q 047260          518 DGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMS  597 (784)
Q Consensus       518 dg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~s  597 (784)
                      -|++++.|+..|.+++.+.+++.....+.....-=......+++..|..++.|++.+..|.++.. ++...+-..+...+
T Consensus        62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~-cVykskcgG~~f~s  140 (354)
T KOG4649|consen   62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYG-CVYKSKCGGGTFVS  140 (354)
T ss_pred             ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccc-eEEecccCCceecc
Confidence            47789999999999999999998887775433222233456688999999999999999999866 33333322233333


Q ss_pred             EEEcCCCCcEEEEEeCCCeEEEEeCCCC--eeEEee--cCCeeE--EEEecCCCEEEEEECCCcEEEEECCCCeEEEEEe
Q 047260          598 LDFHPKKTDLFCFCDNDNEIQYWSINPF--LCTHIT--KGGTAQ--VRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQ  671 (784)
Q Consensus       598 l~~sp~~~~ll~sgs~dg~I~iwDl~~~--~~~~~~--~~~v~~--v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~  671 (784)
                      -+..|-...+++ +...|.|.--..++.  ..+..+  .+++..  ++.   +..+..++-||.+.-|| +.++.+..+.
T Consensus       141 P~i~~g~~sly~-a~t~G~vlavt~~~~~~~~~w~~~~~~PiF~splcv---~~sv~i~~VdG~l~~f~-~sG~qvwr~~  215 (354)
T KOG4649|consen  141 PVIAPGDGSLYA-AITAGAVLAVTKNPYSSTEFWAATRFGPIFASPLCV---GSSVIITTVDGVLTSFD-ESGRQVWRPA  215 (354)
T ss_pred             ceecCCCceEEE-EeccceEEEEccCCCCcceehhhhcCCccccCceec---cceEEEEEeccEEEEEc-CCCcEEEeec
Confidence            444553332333 333555544444433  111111  122211  122   23456666677777777 5555555443


Q ss_pred             CCCCCEEE-EEEc-CCCCEEEEEeCC---------eEEEEeCCCCceEEEeccCCCceEEEEEe-cC---CCEEEEEECC
Q 047260          672 GHAELVNY-ICWD-TNGDYLASVSQN---------LVKVWSMASGECIQELSSNGNQFHSCVFH-PS---YSTLLVVGGI  736 (784)
Q Consensus       672 ~h~~~V~s-l~~s-pdg~~Lasgsdd---------~I~IwDl~t~~~i~~l~~~~~~I~sl~fs-pd---g~~L~s~s~d  736 (784)
                       ..++|.. -+-+ |....|+.+.++         .-.+|...+|...+.+....   ....++ |.   .+++..++.|
T Consensus       216 -t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g~t~~vy~~p~---l~F~~h~~~~S~~~ll~~~s~d  291 (354)
T KOG4649|consen  216 -TKGPIFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWATQSGTTLHVYLSPK---LRFDLHSPGISYPKLLRRSSGD  291 (354)
T ss_pred             -CCCceecccccCCCcceEEEEecCCeEEEeccccceEEEEecCCcEEEEEeCcc---cceeccCCCCcchhhhhhhcCC
Confidence             2223221 1122 333444444444         23456555553333322111   011111 11   3457778889


Q ss_pred             CeEEEEECCCCceEEecccCCceEEE---E-----Ee-CC--CCEEEEEECCCcEEEeC
Q 047260          737 SSLELWNMAENKSMTIAAHENIISAL---A-----QS-PV--TGMVASASHDSSVKLWK  784 (784)
Q Consensus       737 g~I~Iwdl~~~~~~~~~~h~~~V~sl---a-----fs-pd--g~~LaSgs~DG~V~IWd  784 (784)
                      |++.|.-.+.. ......|.+.+-.+   .     |+ |.  +.+|+.|+.|..|+-||
T Consensus       292 gkv~il~~~~s-l~~~~s~~g~lq~~~~~el~~eIFsSPvii~grl~igcRDdYv~cld  349 (354)
T KOG4649|consen  292 GKVMILMTSKS-LAEISSNGGELQNLEAIELSNEIFSSPVIIDGRLLIGCRDDYVRCLD  349 (354)
T ss_pred             CcEEEEEeccc-ccccccCCCccceEEEeecCcccccCCeEEccEEEEEEccCeEEEEe
Confidence            98888744322 22333333322222   1     11 21  34677889999999986

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.51  E-value=6.8e-07  Score=91.86  Aligned_cols=230  Identities=18%  Similarity=0.320  Sum_probs=145.1

Q ss_pred             CCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCccee----eeccCCC------------CCeEEEEEcCC-CCcEEEE
Q 047260          548 HKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCS----QAYTGHS------------SPIMSLDFHPK-KTDLFCF  610 (784)
Q Consensus       548 h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~----~~~~~h~------------~~V~sl~~sp~-~~~ll~s  610 (784)
                      ....|+++.|...|.||++|...|.|.+|.-+....|.    ..+.+|.            ..|..|.|..+ +..-++.
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            34679999999999999999999999999766533222    2234443            34777887654 4556667


Q ss_pred             EeCCCeEEEEeCCCCeeEEeecCCeeEEEEecCCCEEEEE--------E-CCCcEEEEECCCCeEEEEE-eCCCCCEEEE
Q 047260          611 CDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAA--------A-SDKVVSIFDIETDRQTHSL-QGHAELVNYI  680 (784)
Q Consensus       611 gs~dg~I~iwDl~~~~~~~~~~~~v~~v~fsp~~~~Ll~~--------s-~Dg~I~IwDl~t~~~i~~l-~~h~~~V~sl  680 (784)
                      .+.|.+|++|.+.............+.-.-+|.++-+.+.        + .|..|...      +.+.. ..|.-.|+++
T Consensus       105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~------p~rvyaNaH~yhiNSi  178 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAK------PCRVYANAHPYHINSI  178 (460)
T ss_pred             ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEec------cceeccccceeEeeee
Confidence            7789999999986532222211111111112222111110        0 01111111      11122 3588889999


Q ss_pred             EEcCCCCEEEEEeCCeEEEEeCCCCc---eEEEeccCC-----CceEEEEEecCCC-EEEEEECCCeEEEEECCCCc---
Q 047260          681 CWDTNGDYLASVSQNLVKVWSMASGE---CIQELSSNG-----NQFHSCVFHPSYS-TLLVVGGISSLELWNMAENK---  748 (784)
Q Consensus       681 ~~spdg~~Lasgsdd~I~IwDl~t~~---~i~~l~~~~-----~~I~sl~fspdg~-~L~s~s~dg~I~Iwdl~~~~---  748 (784)
                      .|..|...++++.+=.|.+|++.--.   .+..++.|.     ..|++..|+|... .+...+..|.|++-|++...   
T Consensus       179 S~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcd  258 (460)
T COG5170         179 SFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCD  258 (460)
T ss_pred             eecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhcc
Confidence            99999998888766699999986432   233334443     3478889999764 45666778999999998432   


Q ss_pred             --eE----E--------ecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          749 --SM----T--------IAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       749 --~~----~--------~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                        +.    .        +..-...|..+.|+++|++|++-+. -+|+|||
T Consensus       259 n~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwD  307 (460)
T COG5170         259 NSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWD  307 (460)
T ss_pred             CchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEe
Confidence              11    1        1122457889999999999997654 5799997

>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions

Probab=98.51  E-value=1e-07  Score=63.35  Aligned_cols=27  Identities=33%  Similarity=0.532  Sum_probs=24.6

Q ss_pred             HhHHHHHHHHhhcCChHHHHHHHHHhc
Q 047260           10 KMLDVYIHDYFLKRKLHASAKAFMTEG   36 (784)
Q Consensus        10 ~~l~~yiydy~~k~~~~~~a~~~~~e~   36 (784)
                      +.||.+|||||+++|+.+||++|.+|+
T Consensus         1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea   27 (27)
T PF08513_consen    1 EELNQLIYDYLVENGYKETAKAFAKEA   27 (27)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence            579999999999999999999999985

The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.49  E-value=7.8e-05  Score=82.65  Aligned_cols=257  Identities=13%  Similarity=0.140  Sum_probs=151.6

Q ss_pred             cCCCCEEEEEe---------CCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceee
Q 047260          516 SSDGKLLASSG---------HDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQ  586 (784)
Q Consensus       516 spdg~~Lasgs---------~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~  586 (784)
                      |||+++++...         ..+.+.|||+++++....... ...+....|+|+|+.|+... ++.|.++++.++.....
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l   78 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL   78 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence            67888777642         346799999998766555433 67889999999999999885 57899999877643322


Q ss_pred             eccCC----------------CCCeEEEEEcCCCCcEEEEEeCCCeEEEE------------------------------
Q 047260          587 AYTGH----------------SSPIMSLDFHPKKTDLFCFCDNDNEIQYW------------------------------  620 (784)
Q Consensus       587 ~~~~h----------------~~~V~sl~~sp~~~~ll~sgs~dg~I~iw------------------------------  620 (784)
                      +..+.                -+.-..+.|+|++..+++.--++..|..+                              
T Consensus        79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v  158 (353)
T PF00930_consen   79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRV  158 (353)
T ss_dssp             ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EE
T ss_pred             ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCce
Confidence            22220                12235688999998777766555444333                              


Q ss_pred             -----eCCCCeeE--Eee------cCCeeEEEEecCCCEEEEEEC--C---CcEEEEECCCCeEEEEEeC-CCCCE---E
Q 047260          621 -----SINPFLCT--HIT------KGGTAQVRFQPRIGQLLAAAS--D---KVVSIFDIETDRQTHSLQG-HAELV---N  678 (784)
Q Consensus       621 -----Dl~~~~~~--~~~------~~~v~~v~fsp~~~~Ll~~s~--D---g~I~IwDl~t~~~i~~l~~-h~~~V---~  678 (784)
                           |+.+.+..  ...      ..-+..+.|.+++..+++.-.  +   -.+.++|..++.....+.. ....|   .
T Consensus       159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~  238 (353)
T PF00930_consen  159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYD  238 (353)
T ss_dssp             EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSS
T ss_pred             EEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeec
Confidence                 33322211  100      012456778888774444433  2   3466778877644333221 22222   2


Q ss_pred             EEEEc-CCCCEEEEE-e-CC--eEEEEeCCCCceEEEeccCCCceEE-EEEecCCCEEEEEECC-----CeEEEEECC-C
Q 047260          679 YICWD-TNGDYLASV-S-QN--LVKVWSMASGECIQELSSNGNQFHS-CVFHPSYSTLLVVGGI-----SSLELWNMA-E  746 (784)
Q Consensus       679 sl~~s-pdg~~Lasg-s-dd--~I~IwDl~t~~~i~~l~~~~~~I~s-l~fspdg~~L~s~s~d-----g~I~Iwdl~-~  746 (784)
                      .+.|. +++..++.. . +|  .|.+++...+.. ..+....-.|.. +.|+++++.|+..+..     ..|+..++. .
T Consensus       239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~-~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~  317 (353)
T PF00930_consen  239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKP-RQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG  317 (353)
T ss_dssp             EEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEE-EESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET
T ss_pred             ccccccCCCCEEEEEEEcCCCcEEEEEcccccce-eccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC
Confidence            44554 665544443 3 44  788888877763 356555566744 6788888776655543     256667777 6


Q ss_pred             CceEEecccCCceEEEEEeCCCCEEEEEE
Q 047260          747 NKSMTIAAHENIISALAQSPVTGMVASAS  775 (784)
Q Consensus       747 ~~~~~~~~h~~~V~slafspdg~~LaSgs  775 (784)
                      +....+....+.-..+.|||++++++..+
T Consensus       318 ~~~~~LT~~~~~~~~~~~Spdg~y~v~~~  346 (353)
T PF00930_consen  318 GEPKCLTCEDGDHYSASFSPDGKYYVDTY  346 (353)
T ss_dssp             TEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred             CCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence            66666655544446899999999777544

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.46  E-value=2e-05  Score=89.17  Aligned_cols=215  Identities=12%  Similarity=0.192  Sum_probs=123.4

Q ss_pred             CCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEE-eCCCCe
Q 047260          548 HKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYW-SINPFL  626 (784)
Q Consensus       548 h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iw-Dl~~~~  626 (784)
                      .......+.++|+++++++ +.||...|+......  ...    .+....++|.+.+  -+++-.....|.++ ++.. .
T Consensus        31 ~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r--~k~----~G~g~~~vw~~~n--~yAv~~~~~~I~I~kn~~~-~  100 (443)
T PF04053_consen   31 CEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWR--NKA----FGSGLSFVWSSRN--RYAVLESSSTIKIYKNFKN-E  100 (443)
T ss_dssp             -SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTE--EEE----EEE-SEEEE-TSS--EEEEE-TTS-EEEEETTEE--
T ss_pred             CCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCc--ccc----cCceeEEEEecCc--cEEEEECCCeEEEEEcCcc-c
Confidence            3445788999999999888 457788888743322  111    2345678888844  46666668889996 3322 2


Q ss_pred             eEEeecCC--eeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCC
Q 047260          627 CTHITKGG--TAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMAS  704 (784)
Q Consensus       627 ~~~~~~~~--v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t  704 (784)
                      ....+..+  +..+-.   |..|++.+ ++.|.+||+.+++.++.+...  +|..|.|+++|.+++..+++.+.|++...
T Consensus       101 ~~k~i~~~~~~~~If~---G~LL~~~~-~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~i~il~~~~  174 (443)
T PF04053_consen  101 VVKSIKLPFSVEKIFG---GNLLGVKS-SDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDSIYILKYNL  174 (443)
T ss_dssp             TT-----SS-EEEEE----SSSEEEEE-TTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-SEEEEEE-H
T ss_pred             cceEEcCCcccceEEc---CcEEEEEC-CCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCeEEEEEecc
Confidence            21122222  233322   55555554 458999999999999998743  48999999999999999998888877543


Q ss_pred             C-----------ceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceEEecccCCceEEEEEeCCCCEEEE
Q 047260          705 G-----------ECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIAAHENIISALAQSPVTGMVAS  773 (784)
Q Consensus       705 ~-----------~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaS  773 (784)
                      .           ..+..+..-...|.+.+|..+  .++..+.. .|+.  +-.|....+..-+.++.=+.+.+..+.|+.
T Consensus       175 ~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~ld~~~yllgy~~~~~~ly~  249 (443)
T PF04053_consen  175 EAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHLDKPLYLLGYLPKENRLYL  249 (443)
T ss_dssp             HHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-SS--EEEEEETTTTEEEE
T ss_pred             hhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEcCCceEEEEEEccCCEEEE
Confidence            3           123333332467899999877  45544444 6666  556666666555677888888887788999


Q ss_pred             EECCCcEEEe
Q 047260          774 ASHDSSVKLW  783 (784)
Q Consensus       774 gs~DG~V~IW  783 (784)
                      ...|+.|..+
T Consensus       250 ~Dr~~~v~~~  259 (443)
T PF04053_consen  250 IDRDGNVISY  259 (443)
T ss_dssp             E-TT--EEEE
T ss_pred             EECCCCEEEE
Confidence            9999888764

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.45  E-value=3.6e-07  Score=95.29  Aligned_cols=158  Identities=16%  Similarity=0.229  Sum_probs=122.4

Q ss_pred             EEEEcCCCC-EEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCC----cceee
Q 047260          512 CCHFSSDGK-LLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANP----NFCSQ  586 (784)
Q Consensus       512 ~l~fspdg~-~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~----~~~~~  586 (784)
                      .|+|+-+-. +-++.+.+-.|-+-|++++.. ..| ..++.|.++.|...+++++.|+..|.|.++|++..    ..+. 
T Consensus       216 ~CawSlni~gyhfs~G~sqqv~L~nvetg~~-qsf-~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a-  292 (425)
T KOG2695|consen  216 SCAWSLNIMGYHFSVGLSQQVLLTNVETGHQ-QSF-QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCA-  292 (425)
T ss_pred             hhhhhhccceeeecccccceeEEEEeecccc-ccc-ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcce-
Confidence            346664321 224556677799999987654 333 26778999999998999999999999999999875    2233 


Q ss_pred             eccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCee---EEeecCCeeEEE-----EecCCCEEEEEECCCcEEE
Q 047260          587 AYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLC---THITKGGTAQVR-----FQPRIGQLLAAASDKVVSI  658 (784)
Q Consensus       587 ~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~---~~~~~~~v~~v~-----fsp~~~~Ll~~s~Dg~I~I  658 (784)
                      ...-|.+.|+++.........+.+.+-+|.|++||++..++   +...++++...+     +.+..+.+++++.|...+|
T Consensus       293 ~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRi  372 (425)
T KOG2695|consen  293 QRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRI  372 (425)
T ss_pred             EEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEE
Confidence            33458899999988774455777788899999999998777   788888886644     5667788999999999999


Q ss_pred             EECCCCeEEEEEeC
Q 047260          659 FDIETDRQTHSLQG  672 (784)
Q Consensus       659 wDl~t~~~i~~l~~  672 (784)
                      |.++.+..+.++.-
T Consensus       373 Wsl~~ghLl~tipf  386 (425)
T KOG2695|consen  373 WSLDSGHLLCTIPF  386 (425)
T ss_pred             EecccCceeeccCC
Confidence            99999998888764

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.42  E-value=5.7e-06  Score=94.88  Aligned_cols=181  Identities=21%  Similarity=0.284  Sum_probs=130.1

Q ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCccee
Q 047260          506 RNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCS  585 (784)
Q Consensus       506 H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~  585 (784)
                      -.+.++|++++  +++|+.|..+|.|++++... .. .+...|...      ..+|.++++|+.||+|.|..+.+...+.
T Consensus        38 ~~D~is~~av~--~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~  107 (846)
T KOG2066|consen   38 QNDAISCCAVH--DKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT  107 (846)
T ss_pred             hhhHHHHHHhh--cceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccce
Confidence            34568888887  67999999999999999873 33 333455544      5689999999999999999988766332


Q ss_pred             eeccCCCCCeEEEEEcCC----CCcEEEEEeCCCeEEEEeCC---C--CeeEEeecCCeeEEEEecCCCEEEEEECCCcE
Q 047260          586 QAYTGHSSPIMSLDFHPK----KTDLFCFCDNDNEIQYWSIN---P--FLCTHITKGGTAQVRFQPRIGQLLAAASDKVV  656 (784)
Q Consensus       586 ~~~~~h~~~V~sl~~sp~----~~~ll~sgs~dg~I~iwDl~---~--~~~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I  656 (784)
                      .  .....++.+|+++|+    ....+++|+..| +.++.-+   .  .......+++|.++.|.-+   +++-..|--|
T Consensus       108 ~--~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~---lIAWand~Gv  181 (846)
T KOG2066|consen  108 Q--YDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGN---LIAWANDDGV  181 (846)
T ss_pred             e--EecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecCc---EEEEecCCCc
Confidence            2  234578999999998    334688888888 7776543   1  1234555689999999643   5666666679


Q ss_pred             EEEECCCCeEEEEEeCCCCCE------EEEEEcCCCCEEEEEeCCeEEEEeCC
Q 047260          657 SIFDIETDRQTHSLQGHAELV------NYICWDTNGDYLASVSQNLVKVWSMA  703 (784)
Q Consensus       657 ~IwDl~t~~~i~~l~~h~~~V------~sl~~spdg~~Lasgsdd~I~IwDl~  703 (784)
                      +|||+.+++.+..+......+      ..+.|.++.+ |+.|=.++|+|..++
T Consensus       182 ~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIGW~d~v~i~~I~  233 (846)
T KOG2066|consen  182 KVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIGWGDSVKICSIK  233 (846)
T ss_pred             EEEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEecCCeEEEEEEe
Confidence            999999998887776433333      3467766554 555656678888877

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.42  E-value=4.5e-05  Score=91.21  Aligned_cols=237  Identities=11%  Similarity=0.181  Sum_probs=148.4

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCC----CCc
Q 047260          507 NSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAA----NPN  582 (784)
Q Consensus       507 ~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~----~~~  582 (784)
                      .+.|.++.|..++.-++.+..+|.|.+-|..+.... ....-...|.+++|+||+..++..+.++++.+-+-.    ..+
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~  146 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEK  146 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence            467999999999999999999999999988865443 333456889999999999999999888887664321    111


Q ss_pred             ceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEE---eecCCeeEEEEecCCCEEEEEEC----C-C
Q 047260          583 FCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTH---ITKGGTAQVRFQPRIGQLLAAAS----D-K  654 (784)
Q Consensus       583 ~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~---~~~~~v~~v~fsp~~~~Ll~~s~----D-g  654 (784)
                      .. ..-....+....+-|-.....+=  |+ .|.....+........   ....+-+.|.|--||.++++...    + .
T Consensus       147 ~L-~~d~~~~sk~v~VGwGrkeTqfr--gs-~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~R  222 (1265)
T KOG1920|consen  147 PL-DADDERKSKFVNVGWGRKETQFR--GS-EGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTR  222 (1265)
T ss_pred             cc-ccccccccccceecccccceeee--cc-hhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCce
Confidence            11 00001112233344433222111  11 1111111111111100   12245567899999988887432    4 7


Q ss_pred             cEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe----CCeEEEEeCCC---CceEEEeccCCCceEEEEEecCC
Q 047260          655 VVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVS----QNLVKVWSMAS---GECIQELSSNGNQFHSCVFHPSY  727 (784)
Q Consensus       655 ~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgs----dd~I~IwDl~t---~~~i~~l~~~~~~I~sl~fspdg  727 (784)
                      .|+|||.+ +..-..-......-.+++|-|.|..+++..    ++.|.+|.-+.   ++....+......|..++|+.++
T Consensus       223 kirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~s  301 (1265)
T KOG1920|consen  223 KIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNS  301 (1265)
T ss_pred             eEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCC
Confidence            89999987 443333333344557899999999998864    44799998432   33333344444558999999999


Q ss_pred             CEEEEEE---CCCeEEEEECCCCce
Q 047260          728 STLLVVG---GISSLELWNMAENKS  749 (784)
Q Consensus       728 ~~L~s~s---~dg~I~Iwdl~~~~~  749 (784)
                      ..|++..   ....|++|-+.+..-
T Consensus       302 diLAv~~~~~e~~~v~lwt~~NyhW  326 (1265)
T KOG1920|consen  302 DILAVVTSNLENSLVQLWTTGNYHW  326 (1265)
T ss_pred             CceeeeecccccceEEEEEecCeEE
Confidence            9888843   334599998877543

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.39  E-value=7e-05  Score=86.73  Aligned_cols=203  Identities=13%  Similarity=0.158  Sum_probs=142.6

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCC-eEEEEEccCCCEEEEEeCCC-----eEEEEcCCCCc
Q 047260          509 KVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSV-VTDVRFRPNSSQLATASVDK-----SVRLWDAANPN  582 (784)
Q Consensus       509 ~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~-It~i~fspdg~~Latgs~Dg-----~I~IWdl~~~~  582 (784)
                      .|+|  |++.+..+|.|+.+|.|.+.+-. .+.+..+..+... |..+....+..+|++.+.|+     .|+|||++.-.
T Consensus        27 ~isc--~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~  103 (933)
T KOG2114|consen   27 AISC--CSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD  103 (933)
T ss_pred             ceeE--EcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence            5555  46778899999999999888754 5555777777777 44444444446888887765     48999987431


Q ss_pred             -----cee---eecc----CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCC-------CeeEEeecCCeeEEEEecC
Q 047260          583 -----FCS---QAYT----GHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINP-------FLCTHITKGGTAQVRFQPR  643 (784)
Q Consensus       583 -----~~~---~~~~----~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~-------~~~~~~~~~~v~~v~fsp~  643 (784)
                           .+.   +.+.    ....++.+++.+.+- ..+++|-.+|.|..+.=+-       .......+.+|+.+.+..+
T Consensus       104 ~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l-~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d  182 (933)
T KOG2114|consen  104 KNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL-KTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD  182 (933)
T ss_pred             CCCCcceeeeeeeeccCCCCCCCcceEEEEEccc-cEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC
Confidence                 122   2111    235678889998874 4778888999999885331       1222334588999999988


Q ss_pred             CCEEEEEECCCcEEEEECCCCeE-EEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEEEec-cCC
Q 047260          644 IGQLLAAASDKVVSIFDIETDRQ-THSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELS-SNG  715 (784)
Q Consensus       644 ~~~Ll~~s~Dg~I~IwDl~t~~~-i~~l~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~~l~-~~~  715 (784)
                      +..++-+..-..|.+|.+....+ ...+..|...++|..+++...-+++++...|.+||......-..+. ++.
T Consensus       183 ~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~~~cfaf~~g~k  256 (933)
T KOG2114|consen  183 GKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDGRGPCFAFEVGEK  256 (933)
T ss_pred             CceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEcCCCcceeeeecCCCe
Confidence            88744445557889999884443 3446678889999999887666777888899999998766666665 443

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.34  E-value=0.00073  Score=76.52  Aligned_cols=241  Identities=13%  Similarity=0.115  Sum_probs=138.0

Q ss_pred             eEEEEEcCCCCEEEEE-eCC----CeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCC-----------eE
Q 047260          510 VTCCHFSSDGKLLASS-GHD----RKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDK-----------SV  573 (784)
Q Consensus       510 V~~l~fspdg~~Lasg-s~D----g~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg-----------~I  573 (784)
                      +..+.+||||++||.+ +..    ..|+|+|+++++.+....... ....+.|.++++.|+....+.           .|
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v  204 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV  204 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence            4467899999998865 333    359999999997765431111 123399999988877765443           37


Q ss_pred             EEEcCCCCcce-eeeccCCCCC--eEEEEEcCCCCcEEEEEeCC---CeEEEEeCCCC-------eeEEeecCCeeEEEE
Q 047260          574 RLWDAANPNFC-SQAYTGHSSP--IMSLDFHPKKTDLFCFCDND---NEIQYWSINPF-------LCTHITKGGTAQVRF  640 (784)
Q Consensus       574 ~IWdl~~~~~~-~~~~~~h~~~--V~sl~~sp~~~~ll~sgs~d---g~I~iwDl~~~-------~~~~~~~~~v~~v~f  640 (784)
                      +.|++.+.... ...+......  ...+..++++..+++.....   ..|++.|+...       .++......+....-
T Consensus       205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~  284 (414)
T PF02897_consen  205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD  284 (414)
T ss_dssp             EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred             EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence            88888775432 2334433333  56888999999888766544   35888888763       222222233333232


Q ss_pred             ecCCCEEEEEEC----CCcEEEEECCCCeE---EEEEeCCCCCEEEEEEcCCCCEEEEEe--CC--eEEEEeCCCCceEE
Q 047260          641 QPRIGQLLAAAS----DKVVSIFDIETDRQ---THSLQGHAELVNYICWDTNGDYLASVS--QN--LVKVWSMASGECIQ  709 (784)
Q Consensus       641 sp~~~~Ll~~s~----Dg~I~IwDl~t~~~---i~~l~~h~~~V~sl~~spdg~~Lasgs--dd--~I~IwDl~t~~~i~  709 (784)
                      +. +..+++.+.    .+.|...++.....   ...+..+...+.-..+...+.+|+...  +.  .|+++++..+....
T Consensus       285 ~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~  363 (414)
T PF02897_consen  285 HH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESR  363 (414)
T ss_dssp             EE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEE
T ss_pred             cc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEe
Confidence            33 444444433    46788888887652   334555655433333334444444433  33  89999999444444


Q ss_pred             Eecc-CCCceEEEEEecCCCEEEEEEC-C---CeEEEEECCCCceEEe
Q 047260          710 ELSS-NGNQFHSCVFHPSYSTLLVVGG-I---SSLELWNMAENKSMTI  752 (784)
Q Consensus       710 ~l~~-~~~~I~sl~fspdg~~L~s~s~-d---g~I~Iwdl~~~~~~~~  752 (784)
                      .+.. ..+.|..+...++++.+...-. -   ++|+.||+.+++...+
T Consensus       364 ~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~  411 (414)
T PF02897_consen  364 EIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLL  411 (414)
T ss_dssp             EEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEE
T ss_pred             eecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEE
Confidence            4443 3344555555566555443332 2   5899999998876543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.32  E-value=0.00022  Score=82.60  Aligned_cols=257  Identities=9%  Similarity=0.066  Sum_probs=149.0

Q ss_pred             CCEEEEEeCCCeEEEEECCCCceeeecCCCCC------CeE--EEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccC
Q 047260          519 GKLLASSGHDRKVVLWNMDTLQTESTPEDHKS------VVT--DVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTG  590 (784)
Q Consensus       519 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~------~It--~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~  590 (784)
                      +..+++++.++.|+.+|..+++.+..+.....      .+.  .+... ++..++.++.++.|..+|.++++..-+.-..
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~  139 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN  139 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence            44566777889999999999988877653322      110  11111 2267888889999999999998744332211


Q ss_pred             CCC----Ce-EEEEEcCCCCcEEEEEe---------CCCeEEEEeCCCCeeEEeecCC----------------------
Q 047260          591 HSS----PI-MSLDFHPKKTDLFCFCD---------NDNEIQYWSINPFLCTHITKGG----------------------  634 (784)
Q Consensus       591 h~~----~V-~sl~~sp~~~~ll~sgs---------~dg~I~iwDl~~~~~~~~~~~~----------------------  634 (784)
                      ...    .+ ....+.  +. +++.++         .++.|..+|..+++.+-.....                      
T Consensus       140 ~~~~~~~~i~ssP~v~--~~-~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~  216 (488)
T cd00216         140 DQVPPGYTMTGAPTIV--KK-LVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGG  216 (488)
T ss_pred             CCcCcceEecCCCEEE--CC-EEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCC
Confidence            110    01 111222  12 333443         3678899999887776554321                      


Q ss_pred             -e-eEEEEecCCCEEEEEECCC------------------cEEEEECCCCeEEEEEeCCCCCE------EEEEEc----C
Q 047260          635 -T-AQVRFQPRIGQLLAAASDK------------------VVSIFDIETDRQTHSLQGHAELV------NYICWD----T  684 (784)
Q Consensus       635 -v-~~v~fsp~~~~Ll~~s~Dg------------------~I~IwDl~t~~~i~~l~~h~~~V------~sl~~s----p  684 (784)
                       + ....+.+.++.+++++.++                  .|.-+|+++++.+..+..-...+      ....+.    -
T Consensus       217 ~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~  296 (488)
T cd00216         217 TSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPK  296 (488)
T ss_pred             CccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecccc
Confidence             0 1234555667888887665                  79999999999988765311111      001111    2


Q ss_pred             CCC---EEEEEe-CCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEE------------------ECCCeEEEE
Q 047260          685 NGD---YLASVS-QNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVV------------------GGISSLELW  742 (784)
Q Consensus       685 dg~---~Lasgs-dd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~------------------s~dg~I~Iw  742 (784)
                      ++.   ++++++ ++.+..+|.++|+.+.......   ..+..+|  ..++++                  ..+|.|...
T Consensus       297 ~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~---~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~Al  371 (488)
T cd00216         297 DGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE---QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAAL  371 (488)
T ss_pred             CCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec---cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEE
Confidence            333   455555 5599999999999887764321   1123333  233332                  235788889


Q ss_pred             ECCCCceEEecccC---------CceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          743 NMAENKSMTIAAHE---------NIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       743 dl~~~~~~~~~~h~---------~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      |+.+++.+-.....         .+...-...-.+.+|++++.||.|+.+|
T Consensus       372 D~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald  422 (488)
T cd00216         372 DPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFD  422 (488)
T ss_pred             eCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEE
Confidence            99998877222111         1111101112456788888899887764

The alignment model contains an 8-bladed beta-propeller.

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.30  E-value=2.6e-06  Score=61.92  Aligned_cols=38  Identities=29%  Similarity=0.531  Sum_probs=36.1

Q ss_pred             eEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 047260          498 CEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWN  535 (784)
Q Consensus       498 ~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd  535 (784)
                      ..+..+++|.+.|++|+|+|++.+|++|+.|+.|+|||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            46788999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.30  E-value=9.2e-05  Score=85.12  Aligned_cols=222  Identities=12%  Similarity=0.073  Sum_probs=133.4

Q ss_pred             CCCEEEEEeC-CCeEEEEECCCCceeeecC-CCCCCeEEEE-------------------EccCCCEEEEE-eCCCeEEE
Q 047260          518 DGKLLASSGH-DRKVVLWNMDTLQTESTPE-DHKSVVTDVR-------------------FRPNSSQLATA-SVDKSVRL  575 (784)
Q Consensus       518 dg~~Lasgs~-Dg~I~IWd~~t~~~~~~l~-~h~~~It~i~-------------------fspdg~~Latg-s~Dg~I~I  575 (784)
                      ||+||+.-.. +..|...+++..++...+. .....+..++                   +.+||+.+... -..+.+.+
T Consensus       140 dGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSv  219 (635)
T PRK02888        140 DGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTA  219 (635)
T ss_pred             ceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEE
Confidence            7888887653 5567777776554433332 1112222233                   33455444222 22456667


Q ss_pred             EcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEe---CCCeEEEEeCCCCeeEEeecCCeeEEEEecCCCEEEEEEC
Q 047260          576 WDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCD---NDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAAS  652 (784)
Q Consensus       576 Wdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs---~dg~I~iwDl~~~~~~~~~~~~v~~v~fsp~~~~Ll~~s~  652 (784)
                      .|.++.+.......+  .....+++++++.++++++.   ....+...+.........+.-.. ...+.++|++.++  .
T Consensus       220 ID~etmeV~~qV~Vd--gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~-iea~vkdGK~~~V--~  294 (635)
T PRK02888        220 VDAETMEVAWQVMVD--GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR-IEEAVKAGKFKTI--G  294 (635)
T ss_pred             EECccceEEEEEEeC--CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHH-HHHhhhCCCEEEE--C
Confidence            777765433332222  24466788999987777762   23344444433222222111000 0123456776665  3


Q ss_pred             CCcEEEEECCC-----CeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEeCCCCce------------EEEecc
Q 047260          653 DKVVSIFDIET-----DRQTHSLQGHAELVNYICWDTNGDYLASVS--QNLVKVWSMASGEC------------IQELSS  713 (784)
Q Consensus       653 Dg~I~IwDl~t-----~~~i~~l~~h~~~V~sl~~spdg~~Lasgs--dd~I~IwDl~t~~~------------i~~l~~  713 (784)
                      ++.|.++|.++     .+.+..+. -......+.++|||+++++++  +++|.|+|+.+.+.            +.+...
T Consensus       295 gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev  373 (635)
T PRK02888        295 GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL  373 (635)
T ss_pred             CCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc
Confidence            67899999998     34555554 445567899999999999887  44999999987542            333333


Q ss_pred             CCCceEEEEEecCCCEEEEEECCCeEEEEECCC
Q 047260          714 NGNQFHSCVFHPSYSTLLVVGGISSLELWNMAE  746 (784)
Q Consensus       714 ~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~  746 (784)
                       +..-...+|.++|....+..-|..|..||+..
T Consensus       374 -GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        374 -GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             -CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence             23335678999998888888899999999876

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.28  E-value=0.00056  Score=79.21  Aligned_cols=227  Identities=11%  Similarity=0.092  Sum_probs=135.3

Q ss_pred             CEEEEEeCCCeEEEEECCCCceeeecCCCCCC--eEEEEEcc--CCCEEEEEe---------CCCeEEEEcCCCCcceee
Q 047260          520 KLLASSGHDRKVVLWNMDTLQTESTPEDHKSV--VTDVRFRP--NSSQLATAS---------VDKSVRLWDAANPNFCSQ  586 (784)
Q Consensus       520 ~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~--It~i~fsp--dg~~Latgs---------~Dg~I~IWdl~~~~~~~~  586 (784)
                      ..++.++.++.|+.+|.++++.+..+......  -..+.-+|  .+..++.++         .++.|..+|..+++..-+
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~  190 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR  190 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence            57777888999999999999998877543321  01111112  224455554         367899999988874332


Q ss_pred             eccCCCC-------------------Ce-EEEEEcCCCCcEEEEEeCCC------------------eEEEEeCCCCeeE
Q 047260          587 AYTGHSS-------------------PI-MSLDFHPKKTDLFCFCDNDN------------------EIQYWSINPFLCT  628 (784)
Q Consensus       587 ~~~~h~~-------------------~V-~sl~~sp~~~~ll~sgs~dg------------------~I~iwDl~~~~~~  628 (784)
                      .......                   .| ....+.+.+. +++.+..++                  .|.-+|.++++..
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g-~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~  269 (488)
T cd00216         191 FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTN-LVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVK  269 (488)
T ss_pred             eeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCC-EEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEE
Confidence            2211110                   01 1223333333 455555444                  7899999988887


Q ss_pred             EeecCCe---------eEEEEe----cCCC---EEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEE
Q 047260          629 HITKGGT---------AQVRFQ----PRIG---QLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASV  692 (784)
Q Consensus       629 ~~~~~~v---------~~v~fs----p~~~---~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasg  692 (784)
                      -.+....         ....+.    -++.   .+++++.+|.+..+|.++++.+......   ...+..+| +.+++..
T Consensus       270 W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~-~~vyv~~  345 (488)
T cd00216         270 WFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP-GLVYLGA  345 (488)
T ss_pred             EEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC-ceEEEcc
Confidence            6654211         001111    1232   5777788999999999999988776421   11123333 2222211


Q ss_pred             ------------------eCCeEEEEeCCCCceEEEeccCC--------CceEEEEEecCCCEEEEEECCCeEEEEECCC
Q 047260          693 ------------------SQNLVKVWSMASGECIQELSSNG--------NQFHSCVFHPSYSTLLVVGGISSLELWNMAE  746 (784)
Q Consensus       693 ------------------sdd~I~IwDl~t~~~i~~l~~~~--------~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~  746 (784)
                                        .++.|...|+.+|+.+.+.....        .....-...-.+..|++++.||.|+.+|..+
T Consensus       346 ~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~t  425 (488)
T cd00216         346 FHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATT  425 (488)
T ss_pred             ccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCC
Confidence                              13478899999999887775431        1111111122456789999999999999999


Q ss_pred             CceEE
Q 047260          747 NKSMT  751 (784)
Q Consensus       747 ~~~~~  751 (784)
                      ++.+-
T Consensus       426 G~~lW  430 (488)
T cd00216         426 GKELW  430 (488)
T ss_pred             Cceee
Confidence            99883

The alignment model contains an 8-bladed beta-propeller.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.28  E-value=0.00014  Score=84.28  Aligned_cols=201  Identities=10%  Similarity=0.225  Sum_probs=136.1

Q ss_pred             EEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCC-C----eEEEEeCCC------
Q 047260          556 RFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDND-N----EIQYWSINP------  624 (784)
Q Consensus       556 ~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~d-g----~I~iwDl~~------  624 (784)
                      +|++.+..++.|+.||.|.+.+-.  -.....+..+...|...-+.-++..++++.+.| +    .|+|||++.      
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~s--~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s  107 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNSS--FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS  107 (933)
T ss_pred             EEcCCCceEEEeeccccEEEeccc--ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence            456778899999999988888743  223456666666644444555554555555544 3    699999963      


Q ss_pred             CeeE---Eee-------cCCeeEEEEecCCCEEEEEECCCcEEEEECCC----CeEEEEEeCCCCCEEEEEEcCCCCE-E
Q 047260          625 FLCT---HIT-------KGGTAQVRFQPRIGQLLAAASDKVVSIFDIET----DRQTHSLQGHAELVNYICWDTNGDY-L  689 (784)
Q Consensus       625 ~~~~---~~~-------~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t----~~~i~~l~~h~~~V~sl~~spdg~~-L  689 (784)
                      ..++   +.+       ..++.+++++.+-..+++|..+|.|..+.-.-    +...........+|+.+.+..++.. +
T Consensus       108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l  187 (933)
T KOG2114|consen  108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL  187 (933)
T ss_pred             cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence            2333   111       14567889999988999999999999985321    2222222335679999999988887 6


Q ss_pred             EEEeCCeEEEEeCCCCc-eEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCc-eEEec-ccCCce
Q 047260          690 ASVSQNLVKVWSMASGE-CIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENK-SMTIA-AHENII  759 (784)
Q Consensus       690 asgsdd~I~IwDl~t~~-~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~-~~~~~-~h~~~V  759 (784)
                      +++....|.+|.+.... .+..+..++..++|..+++....+++++. ..|.+|+..... +..+. +|....
T Consensus       188 Fv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~~g~kk~~  259 (933)
T KOG2114|consen  188 FVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFEVGEKKEM  259 (933)
T ss_pred             EEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeecCCCeEEE
Confidence            66667789999988444 35557888889999999887664555554 469999987644 33554 555443

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.28  E-value=2.8e-05  Score=89.40  Aligned_cols=181  Identities=13%  Similarity=0.152  Sum_probs=130.4

Q ss_pred             CCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCee-
Q 047260          549 KSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLC-  627 (784)
Q Consensus       549 ~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~-  627 (784)
                      ...++|++++  ++.|+.|+.+|.|++++....  . .....|...      ..+|. .+++|+.||.|.|..+-+... 
T Consensus        39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~--~-~~~~~~s~~------~~~Ge-y~asCS~DGkv~I~sl~~~~~~  106 (846)
T KOG2066|consen   39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGN--P-KTNFDHSSS------ILEGE-YVASCSDDGKVVIGSLFTDDEI  106 (846)
T ss_pred             hhHHHHHHhh--cceeeeccccceEEEEecCCc--c-ccccccccc------ccCCc-eEEEecCCCcEEEeeccCCccc
Confidence            3567777775  678999999999999998642  1 333344433      33444 899999999999998876544 


Q ss_pred             -EEeecCCeeEEEEecC-----CCEEEEEECCCcEEEEECCCC--eEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEE
Q 047260          628 -THITKGGTAQVRFQPR-----IGQLLAAASDKVVSIFDIETD--RQTHSLQGHAELVNYICWDTNGDYLASVSQNLVKV  699 (784)
Q Consensus       628 -~~~~~~~v~~v~fsp~-----~~~Ll~~s~Dg~I~IwDl~t~--~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd~I~I  699 (784)
                       ...++.++.+|+++|+     .+.+++|+..| +.++.-+-.  +.-..+....++|.+++|.  |.++|-++|.-|+|
T Consensus       107 ~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~Gv~v  183 (846)
T KOG2066|consen  107 TQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDGVKV  183 (846)
T ss_pred             eeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCCcEE
Confidence             4566789999999998     46788888888 777764321  1112455577899999996  78999999989999


Q ss_pred             EeCCCCceEEEeccCCCce------EEEEEecCCCEEEEEECCCeEEEEECCC
Q 047260          700 WSMASGECIQELSSNGNQF------HSCVFHPSYSTLLVVGGISSLELWNMAE  746 (784)
Q Consensus       700 wDl~t~~~i~~l~~~~~~I------~sl~fspdg~~L~s~s~dg~I~Iwdl~~  746 (784)
                      ||+.+++.+..+......+      ..+.|.++.+ |+. |...+|+|..++.
T Consensus       184 yd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVI-GW~d~v~i~~I~~  234 (846)
T KOG2066|consen  184 YDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVI-GWGDSVKICSIKK  234 (846)
T ss_pred             EeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEE-ecCCeEEEEEEec
Confidence            9999998887776544333      4566776643 444 4444788887773

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.27  E-value=0.00021  Score=75.85  Aligned_cols=184  Identities=16%  Similarity=0.120  Sum_probs=127.3

Q ss_pred             EEEcCCCCEEEEEe-----CCCeEEEEECC-CCceeeecCCCCCCeEEEEEccCCCEEEEEeC-----------------
Q 047260          513 CHFSSDGKLLASSG-----HDRKVVLWNMD-TLQTESTPEDHKSVVTDVRFRPNSSQLATASV-----------------  569 (784)
Q Consensus       513 l~fspdg~~Lasgs-----~Dg~I~IWd~~-t~~~~~~l~~h~~~It~i~fspdg~~Latgs~-----------------  569 (784)
                      -+||+||++|++.-     ..|.|-|||.. +.+.+.++..|.-.-..+.+.||++.|+++..                 
T Consensus        56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~t  135 (305)
T PF07433_consen   56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDT  135 (305)
T ss_pred             EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhh
Confidence            47999999998853     45889999999 78888999888888889999999988887621                 


Q ss_pred             -CCeEEEEcCCCCcceee-ec--cCCCCCeEEEEEcCCCCcEEEEEeCCC-------eEEEEeCCCCee--------EEe
Q 047260          570 -DKSVRLWDAANPNFCSQ-AY--TGHSSPIMSLDFHPKKTDLFCFCDNDN-------EIQYWSINPFLC--------THI  630 (784)
Q Consensus       570 -Dg~I~IWdl~~~~~~~~-~~--~~h~~~V~sl~~sp~~~~ll~sgs~dg-------~I~iwDl~~~~~--------~~~  630 (784)
                       +-++.+.|..+++...+ .+  ..|...|..+++.+++. +++.+-..|       .|.+++......        ...
T Consensus       136 M~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~-V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~  214 (305)
T PF07433_consen  136 MQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGT-VAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRR  214 (305)
T ss_pred             cCCceEEEecCCCceeeeeecCccccccceeeEEecCCCc-EEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHh
Confidence             22345556666663332 23  34677899999999876 333333332       244444433111        123


Q ss_pred             ecCCeeEEEEecCCCEEEEEEC-CCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEE
Q 047260          631 TKGGTAQVRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQNLVKVW  700 (784)
Q Consensus       631 ~~~~v~~v~fsp~~~~Ll~~s~-Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd~I~Iw  700 (784)
                      +.+-+-+|+++.++..+++.+- .+.+.+||..+++.+....  -..+..++..+++ ++++.+.+.+...
T Consensus       215 l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~--l~D~cGva~~~~~-f~~ssG~G~~~~~  282 (305)
T PF07433_consen  215 LNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP--LPDACGVAPTDDG-FLVSSGQGQLIRL  282 (305)
T ss_pred             hCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc--cCceeeeeecCCc-eEEeCCCccEEEc
Confidence            3467889999999998877776 7899999999998887653  3345666666666 6666666654333

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.24  E-value=3.7e-06  Score=87.93  Aligned_cols=147  Identities=15%  Similarity=0.257  Sum_probs=110.8

Q ss_pred             EEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC-----e--eEEeecCCeeE
Q 047260          565 ATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPF-----L--CTHITKGGTAQ  637 (784)
Q Consensus       565 atgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~-----~--~~~~~~~~v~~  637 (784)
                      ++.+.+-.|-+-|++++-  ...+. ..+.|.++.|...++ ++..|..+|.|..+|++..     .  ....+...+++
T Consensus       228 fs~G~sqqv~L~nvetg~--~qsf~-sksDVfAlQf~~s~n-Lv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvts  303 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGH--QQSFQ-SKSDVFALQFAGSDN-LVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTS  303 (425)
T ss_pred             ecccccceeEEEEeeccc--ccccc-cchhHHHHHhcccCC-eeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhh
Confidence            555667778888888754  22232 567899999987665 8888999999999999853     2  23345577888


Q ss_pred             EEEec-CCCEEEEEECCCcEEEEECCCCeE---EEEEeCCCCCEEEEE--EcCCCCEEEEEeCC-eEEEEeCCCCceEEE
Q 047260          638 VRFQP-RIGQLLAAASDKVVSIFDIETDRQ---THSLQGHAELVNYIC--WDTNGDYLASVSQN-LVKVWSMASGECIQE  710 (784)
Q Consensus       638 v~fsp-~~~~Ll~~s~Dg~I~IwDl~t~~~---i~~l~~h~~~V~sl~--~spdg~~Lasgsdd-~I~IwDl~t~~~i~~  710 (784)
                      +..-. ++.+|++.+.+|.|++||++.-++   +..+.+|-..-.-+-  ..+...++++++|| ..+||.++++..+.+
T Consensus       304 lq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~t  383 (425)
T KOG2695|consen  304 LQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCT  383 (425)
T ss_pred             hhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeec
Confidence            77555 677888888999999999998766   888888876444333  34566677778877 999999999999998


Q ss_pred             eccCC
Q 047260          711 LSSNG  715 (784)
Q Consensus       711 l~~~~  715 (784)
                      ++...
T Consensus       384 ipf~~  388 (425)
T KOG2695|consen  384 IPFPY  388 (425)
T ss_pred             cCCCC
Confidence            87543

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.24  E-value=0.00018  Score=81.93  Aligned_cols=268  Identities=9%  Similarity=0.101  Sum_probs=153.5

Q ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecC-CCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcce
Q 047260          506 RNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPE-DHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFC  584 (784)
Q Consensus       506 H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~-~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~  584 (784)
                      |...|.--+++..+++|+.|+.-|.|++|+-..+.....-. +..+.+..+..+++..++|.|+..|.|.|+-+......
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~  111 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR  111 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence            44445556667788999999999999999988765543332 34455666778888888899999999999988753211


Q ss_pred             -----eeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC-------eeEEeecCCeeEEEEecCCCEEEEEEC
Q 047260          585 -----SQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPF-------LCTHITKGGTAQVRFQPRIGQLLAAAS  652 (784)
Q Consensus       585 -----~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~-------~~~~~~~~~v~~v~fsp~~~~Ll~~s~  652 (784)
                           ...-..|...|++++|++++. -+++|+..|.|.+-.++..       ..+......|..+.+.  ..+|++++.
T Consensus       112 ~~~~~t~~d~~~~~rVTal~Ws~~~~-k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~--q~~LLVStl  188 (726)
T KOG3621|consen  112 DLDYVTPCDKSHKCRVTALEWSKNGM-KLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL--QSYLLVSTL  188 (726)
T ss_pred             cceeeccccccCCceEEEEEeccccc-EEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc--cceehHhhh
Confidence                 111224788999999999987 6778999999998888761       2222333444444432  344444443


Q ss_pred             CCcEEEEECCCCeEEEEEe-C-CCC-CEEEEEEcCC----CCEEEEEeCCeEEEEeCCC-CceEEEecc-----------
Q 047260          653 DKVVSIFDIETDRQTHSLQ-G-HAE-LVNYICWDTN----GDYLASVSQNLVKVWSMAS-GECIQELSS-----------  713 (784)
Q Consensus       653 Dg~I~IwDl~t~~~i~~l~-~-h~~-~V~sl~~spd----g~~Lasgsdd~I~IwDl~t-~~~i~~l~~-----------  713 (784)
                      -.. .+++.+.++ +..+- . .++ .-...||-|.    ..-.+.++.-..|+|...- |+.+.+..-           
T Consensus       189 ~r~-~Lc~tE~et-i~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG~RlWead~~G~V~~Thqfk~ala~~p~p~  266 (726)
T KOG3621|consen  189 TRC-ILCQTEAET-ITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPGLRLWEADFAGEVIKTHQFKDALARPPAPE  266 (726)
T ss_pred             hhh-heeecchhH-HHHhcCCCcCCccccceEEeeccccCCCceEEEecCCCceEEeecceeEEEeeehhhhhccCCCCc
Confidence            222 233433222 11110 0 111 1233445443    2333444444567776542 444333210           


Q ss_pred             --CCC----------------ceEEEEEecCCCEEEEEECCCeEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEE
Q 047260          714 --NGN----------------QFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASAS  775 (784)
Q Consensus       714 --~~~----------------~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs  775 (784)
                        +.+                ....+.+-. +..+++-+.-| |+|+|..+...+........|..++.+  ++-|++-.
T Consensus       267 i~~~s~esp~~~~~~~~~q~ls~~k~~~l~-~~~vLa~te~G-iyv~d~~~~~v~l~se~~~DI~dVs~~--~neiFvL~  342 (726)
T KOG3621|consen  267 IPIRSLESPNQRSLPSGTQHLSLSKSSTLH-SDRVLAWTEVG-IYVFDSNNSQVYLWSEGGHDILDVSHC--GNEIFVLN  342 (726)
T ss_pred             ccCCCcCCccccCCCCCccccccceeEEee-cceEEEeecce-EEEEEeccceEEEeecCCCceeEEeec--CceEEEEe
Confidence              000                011111111 22455555555 889998888777666555667666654  44455555


Q ss_pred             CCCcEEE
Q 047260          776 HDSSVKL  782 (784)
Q Consensus       776 ~DG~V~I  782 (784)
                      .|+.+++
T Consensus       343 ~d~~l~~  349 (726)
T KOG3621|consen  343 LDRGLKV  349 (726)
T ss_pred             cCCceeE
Confidence            6665544

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.23  E-value=0.00021  Score=85.72  Aligned_cols=230  Identities=14%  Similarity=0.200  Sum_probs=135.2

Q ss_pred             CCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeC--CC-
Q 047260          548 HKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSI--NP-  624 (784)
Q Consensus       548 h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl--~~-  624 (784)
                      ....|.++.|..+..-|+.+..+|.|.+-|..+..  ......-...|.+++|+||+. +++..+..++|.+-+-  .. 
T Consensus        67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~--~eivg~vd~GI~aaswS~Dee-~l~liT~~~tll~mT~~f~~i  143 (1265)
T KOG1920|consen   67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLE--LEIVGNVDNGISAASWSPDEE-LLALITGRQTLLFMTKDFEPI  143 (1265)
T ss_pred             CCcceEEEEEecccceEEEEecCCcEEEEcccccc--eeeeeeccCceEEEeecCCCc-EEEEEeCCcEEEEEeccccch
Confidence            34689999999999999999999999999888754  233334467899999999988 5555555566655332  11 


Q ss_pred             -CeeEEee---cCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-----C-
Q 047260          625 -FLCTHIT---KGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVS-----Q-  694 (784)
Q Consensus       625 -~~~~~~~---~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgs-----d-  694 (784)
                       .+.+..-   .+....+-|-.....+ - +..|.....+............-.+.-+.|+|--||.|+++..     + 
T Consensus       144 ~E~~L~~d~~~~sk~v~VGwGrkeTqf-r-gs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~  221 (1265)
T KOG1920|consen  144 AEKPLDADDERKSKFVNVGWGRKETQF-R-GSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGT  221 (1265)
T ss_pred             hccccccccccccccceecccccceee-e-cchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCc
Confidence             1111000   0111112221111110 0 0111111111111000000001122335689999999999843     4 


Q ss_pred             CeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEEC---CCeEEEEECCCCceE----EecccCCceEEEEEeCC
Q 047260          695 NLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGG---ISSLELWNMAENKSM----TIAAHENIISALAQSPV  767 (784)
Q Consensus       695 d~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~---dg~I~Iwdl~~~~~~----~~~~h~~~V~slafspd  767 (784)
                      ..|+|||.. |..-.+-....+.-.+++|-|.|..+++...   |+.|.+|.-+.-+.-    ........|..++|+.+
T Consensus       222 RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~  300 (1265)
T KOG1920|consen  222 RKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSN  300 (1265)
T ss_pred             eeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCC
Confidence            489999977 4433222233344578999999998888755   457999986654322    22233445999999999


Q ss_pred             CCEEEE---EECCCcEEEe
Q 047260          768 TGMVAS---ASHDSSVKLW  783 (784)
Q Consensus       768 g~~LaS---gs~DG~V~IW  783 (784)
                      +.+|++   ......|++|
T Consensus       301 sdiLAv~~~~~e~~~v~lw  319 (1265)
T KOG1920|consen  301 SDILAVVTSNLENSLVQLW  319 (1265)
T ss_pred             CCceeeeecccccceEEEE
Confidence            999887   3344449998

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.22  E-value=0.00094  Score=73.02  Aligned_cols=266  Identities=15%  Similarity=0.122  Sum_probs=135.0

Q ss_pred             EEcCCCCEEEEEeC-CC--eEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccC
Q 047260          514 HFSSDGKLLASSGH-DR--KVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTG  590 (784)
Q Consensus       514 ~fspdg~~Lasgs~-Dg--~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~  590 (784)
                      +|.+||+.|+.++. ||  .+.+.|+.+++....-.+-........++++.+.|+-......|+-.|+++.+ ....+..
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e-~~~vy~~  120 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLE-ERVVYEV  120 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT---EEEEEE-
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCc-EEEEEEC
Confidence            56789976655544 54  57777888877665444322333356777888888777667789999999866 3344444


Q ss_pred             CCCCeEEEEEc--CCCCcEEEEEeC----------------------CCeEEEEeCCCCeeEEeec--CCeeEEEEecCC
Q 047260          591 HSSPIMSLDFH--PKKTDLFCFCDN----------------------DNEIQYWSINPFLCTHITK--GGTAQVRFQPRI  644 (784)
Q Consensus       591 h~~~V~sl~~s--p~~~~ll~sgs~----------------------dg~I~iwDl~~~~~~~~~~--~~v~~v~fsp~~  644 (784)
                      ...-+-...|.  .++. .++....                      ...|...|+.+++....+.  .-+..+.|+|..
T Consensus       121 p~~~~g~gt~v~n~d~t-~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~d  199 (386)
T PF14583_consen  121 PDDWKGYGTWVANSDCT-KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTD  199 (386)
T ss_dssp             -TTEEEEEEEEE-TTSS-EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTE
T ss_pred             CcccccccceeeCCCcc-EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCC
Confidence            44555445553  3333 3332211                      1245556777766555554  445788899988


Q ss_pred             CEEEEEECCC-----cEEEEECCC-CeEEEEEeCCC--CCEEEEEEcCCCCEEEEEe-----CC-eEEEEeCCCCceEEE
Q 047260          645 GQLLAAASDK-----VVSIFDIET-DRQTHSLQGHA--ELVNYICWDTNGDYLASVS-----QN-LVKVWSMASGECIQE  710 (784)
Q Consensus       645 ~~Ll~~s~Dg-----~I~IwDl~t-~~~i~~l~~h~--~~V~sl~~spdg~~Lasgs-----dd-~I~IwDl~t~~~i~~  710 (784)
                      ..+++-|.+|     .-+||-+++ +...+.+..+.  ..+..=-|.|||..|.--+     .+ .|.-+|+.+++....
T Consensus       200 p~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~  279 (386)
T PF14583_consen  200 PTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRL  279 (386)
T ss_dssp             EEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEE
T ss_pred             CCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEE
Confidence            8877776533     136665543 33334443332  2445556899998776533     12 788888888765432


Q ss_pred             eccCCCceEEEEEecCCCEEEEEECCC----------------eEEEEECCCCceEEecccCC-----------ceEEEE
Q 047260          711 LSSNGNQFHSCVFHPSYSTLLVVGGIS----------------SLELWNMAENKSMTIAAHEN-----------IISALA  763 (784)
Q Consensus       711 l~~~~~~I~sl~fspdg~~L~s~s~dg----------------~I~Iwdl~~~~~~~~~~h~~-----------~V~sla  763 (784)
                      ...  ........++++.+++-=+.|.                -|+++++..+....+..|..           .=-...
T Consensus       280 ~~~--p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~  357 (386)
T PF14583_consen  280 MEM--PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPS  357 (386)
T ss_dssp             EEE---SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT----E
T ss_pred             EeC--CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCc
Confidence            222  2344556678887655444431                46678888777654444431           123578


Q ss_pred             EeCCCCEEEEE-ECCCcEEEe
Q 047260          764 QSPVTGMVASA-SHDSSVKLW  783 (784)
Q Consensus       764 fspdg~~LaSg-s~DG~V~IW  783 (784)
                      |+||++.|+.. ..+|...||
T Consensus       358 FSPDgk~VlF~Sd~~G~~~vY  378 (386)
T PF14583_consen  358 FSPDGKWVLFRSDMEGPPAVY  378 (386)
T ss_dssp             E-TTSSEEEEEE-TTSS-EEE
T ss_pred             cCCCCCEEEEECCCCCCccEE
Confidence            99999966554 457776665

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.22  E-value=0.00018  Score=80.40  Aligned_cols=261  Identities=15%  Similarity=0.124  Sum_probs=137.4

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCc-----c
Q 047260          509 KVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPN-----F  583 (784)
Q Consensus       509 ~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~-----~  583 (784)
                      .|+++.|+++...|++|...|.|.||.+...+...  ..-...-....+.+-.   ..-...+.+-|-+.....     .
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~~---~~~~~~~l~di~~r~~~~~~~gf~   77 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRFS---LNNSPGKLTDISDRAPPSLKEGFL   77 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S-----GGGSS-SEEE-GGG--TT-SEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCccccccc---ccCCCcceEEehhhCCcccccccC
Confidence            48999999999999999999999999886533322  0001111122221100   000011222222221111     2


Q ss_pred             eeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEee-----------cCCeeEEEEec-----CC---
Q 047260          584 CSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHIT-----------KGGTAQVRFQP-----RI---  644 (784)
Q Consensus       584 ~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~-----------~~~v~~v~fsp-----~~---  644 (784)
                      ....+....++|++++.+.-|  +++.|..+|.+.|.|++....+...           ...++++.|..     |+   
T Consensus        78 P~~l~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySS  155 (395)
T PF08596_consen   78 PLTLLDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSS  155 (395)
T ss_dssp             EEEEE---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEE
T ss_pred             chhheeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccc
Confidence            333344557899999998555  8999999999999999976665441           13456666652     22   


Q ss_pred             CEEEEEECCCcEEEEECCC---CeE----EEEEeCCCCCEEEEE-EcCC---------------------CCEEEEEeCC
Q 047260          645 GQLLAAASDKVVSIFDIET---DRQ----THSLQGHAELVNYIC-WDTN---------------------GDYLASVSQN  695 (784)
Q Consensus       645 ~~Ll~~s~Dg~I~IwDl~t---~~~----i~~l~~h~~~V~sl~-~spd---------------------g~~Lasgsdd  695 (784)
                      -.+++|+..|.+.+|.+.-   +..    ......+.++|..|. ++.+                     .-+++++++.
T Consensus       156 i~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~  235 (395)
T PF08596_consen  156 ICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSES  235 (395)
T ss_dssp             EEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SS
T ss_pred             eEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEccc
Confidence            3588889999999998741   211    122224566666655 3221                     1277888888


Q ss_pred             eEEEEeCCCCceEEEeccCCCceEEEEEe-----cCCCEEEEEECCCeEEEEECCCCceEE-ecc----cCCceEEEEEe
Q 047260          696 LVKVWSMASGECIQELSSNGNQFHSCVFH-----PSYSTLLVVGGISSLELWNMAENKSMT-IAA----HENIISALAQS  765 (784)
Q Consensus       696 ~I~IwDl~t~~~i~~l~~~~~~I~sl~fs-----pdg~~L~s~s~dg~I~Iwdl~~~~~~~-~~~----h~~~V~slafs  765 (784)
                      .++|+...+.+..++..........+.+-     ..+..|++...+|.|++|.+-.-+.+. ..-    ....+...+++
T Consensus       236 ~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis  315 (395)
T PF08596_consen  236 DIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSIS  315 (395)
T ss_dssp             EEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-
T ss_pred             ceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEEC
Confidence            99999999888776665332233344452     356678899999999999999877662 222    22335566778


Q ss_pred             CCCCEEEEEEC
Q 047260          766 PVTGMVASASH  776 (784)
Q Consensus       766 pdg~~LaSgs~  776 (784)
                      ++|..++-.+.
T Consensus       316 ~~Gdi~~~~gp  326 (395)
T PF08596_consen  316 RNGDIFYWTGP  326 (395)
T ss_dssp             TTS-EEEE-SS
T ss_pred             CCCCEEEEeCc
Confidence            88887766544

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.19  E-value=0.00029  Score=81.16  Aligned_cols=179  Identities=8%  Similarity=-0.041  Sum_probs=115.8

Q ss_pred             EcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec--CCeeEEEEecCCCEEEEEEC----CCcEEEEECCCCeEEEEEeCC
Q 047260          600 FHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK--GGTAQVRFQPRIGQLLAAAS----DKVVSIFDIETDRQTHSLQGH  673 (784)
Q Consensus       600 ~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~--~~v~~v~fsp~~~~Ll~~s~----Dg~I~IwDl~t~~~i~~l~~h  673 (784)
                      +.|++..+.......+.+.+.|..+.+......  +....+.++++++++++.+.    ..++...+......+..+...
T Consensus       200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~  279 (635)
T PRK02888        200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA  279 (635)
T ss_pred             cCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH
Confidence            344555444444445677777887765554433  44456789999999988873    234444444333322222111


Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCeEEEEeCCC----C-ceEEEeccCCCceEEEEEecCCCEEEEEEC-CCeEEEEECCCC
Q 047260          674 AELVNYICWDTNGDYLASVSQNLVKVWSMAS----G-ECIQELSSNGNQFHSCVFHPSYSTLLVVGG-ISSLELWNMAEN  747 (784)
Q Consensus       674 ~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t----~-~~i~~l~~~~~~I~sl~fspdg~~L~s~s~-dg~I~Iwdl~~~  747 (784)
                      .  +  ..+.++|++... .++.|.+.|.++    + +.+..+. -......|.++|||+++++++. +.+|.|+|+.+.
T Consensus       280 ~--i--ea~vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~  353 (635)
T PRK02888        280 R--I--EEAVKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKL  353 (635)
T ss_pred             H--H--HHhhhCCCEEEE-CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhh
Confidence            0  0  133457887766 456899999998    3 4555554 3456689999999999888776 679999999885


Q ss_pred             ce------------EEecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          748 KS------------MTIAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       748 ~~------------~~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      +.            ..-..-.......+|.++|+.+.|.--|..|..||
T Consensus       354 k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn  402 (635)
T PRK02888        354 DDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWN  402 (635)
T ss_pred             hhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEe
Confidence            53            11111223345678999998888888899999996

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.17  E-value=3.6e-06  Score=61.20  Aligned_cols=38  Identities=29%  Similarity=0.589  Sum_probs=36.1

Q ss_pred             ceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEc
Q 047260          540 QTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWD  577 (784)
Q Consensus       540 ~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWd  577 (784)
                      +++.++.+|...|++|+|+|++.+|++++.|+.|+|||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            56788999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.16  E-value=3.2e-05  Score=88.73  Aligned_cols=110  Identities=17%  Similarity=0.256  Sum_probs=86.2

Q ss_pred             eEEEEEcCCCCEEEEEe----CCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCccee
Q 047260          510 VTCCHFSSDGKLLASSG----HDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCS  585 (784)
Q Consensus       510 V~~l~fspdg~~Lasgs----~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~  585 (784)
                      -+-+.|+|...+||+++    ..|.|.||- ++|++-... ...-.+++++|+|..-.|+.|-.-|.+.+|...+.+ ..
T Consensus        18 sti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~V-t~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e-~h   94 (1416)
T KOG3617|consen   18 STISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDV-TYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE-TH   94 (1416)
T ss_pred             ccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccc-ccceehhhhccChHHHHHhhccccceeEEEecCCce-ee
Confidence            34467999999998876    357888884 445543332 122346779999998889999889999999988755 55


Q ss_pred             eeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCC
Q 047260          586 QAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSIN  623 (784)
Q Consensus       586 ~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~  623 (784)
                      .....|+.+|..+.|+++|. .+++++.-|.|.+|...
T Consensus        95 tv~~th~a~i~~l~wS~~G~-~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   95 TVVETHPAPIQGLDWSHDGT-VLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             eeccCCCCCceeEEecCCCC-eEEEcCCCceeEEEEee
Confidence            56668999999999999998 78899999999999876

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.15  E-value=0.0027  Score=71.17  Aligned_cols=249  Identities=14%  Similarity=0.150  Sum_probs=168.3

Q ss_pred             EEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEe-CCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEE
Q 047260          531 VVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATAS-VDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFC  609 (784)
Q Consensus       531 I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs-~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~  609 (784)
                      +.+++..+......+..+. ....+...+++..++... ....+.+.+.. ..........-......+++++.+...++
T Consensus        13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~~~~~g~~~p~~i~v~~~~~~vyv   90 (381)
T COG3391          13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQSLSVGGVYPAGVAVNPAGNKVYV   90 (381)
T ss_pred             eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeecccc-cceeeeeccCCCccccceeeCCCCCeEEE
Confidence            5566655555544443333 556677888775554443 22245555555 22122111111134567888999988888


Q ss_pred             EEeCCCeEEEEeCCCCeeEEeec--CCeeEEEEecCCCEEEEEEC---CCcEEEEECCCCeEEEEEeCCCCCEEEEEEcC
Q 047260          610 FCDNDNEIQYWSINPFLCTHITK--GGTAQVRFQPRIGQLLAAAS---DKVVSIFDIETDRQTHSLQGHAELVNYICWDT  684 (784)
Q Consensus       610 sgs~dg~I~iwDl~~~~~~~~~~--~~v~~v~fsp~~~~Ll~~s~---Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~sp  684 (784)
                      ....++.|.+.|....++.....  .....++++++++.++++..   ++.+.+.|..+.+.+........+ ..++++|
T Consensus        91 ~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p  169 (381)
T COG3391          91 TTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDP  169 (381)
T ss_pred             ecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECC
Confidence            88888999999988766665554  35677899999998888877   689999999999888886544445 8899999


Q ss_pred             CCCEEEEEe--CCeEEEEeCCCCceEE-E---eccCCCceEEEEEecCCCEEEEEECC---CeEEEEECCCCceEEeccc
Q 047260          685 NGDYLASVS--QNLVKVWSMASGECIQ-E---LSSNGNQFHSCVFHPSYSTLLVVGGI---SSLELWNMAENKSMTIAAH  755 (784)
Q Consensus       685 dg~~Lasgs--dd~I~IwDl~t~~~i~-~---l~~~~~~I~sl~fspdg~~L~s~s~d---g~I~Iwdl~~~~~~~~~~h  755 (784)
                      +|..++.+.  ++.|.+.|........ .   .......-..+.+.|++.++++....   +.+...|..++........
T Consensus       170 ~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~  249 (381)
T COG3391         170 DGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLP  249 (381)
T ss_pred             CCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccc
Confidence            999877776  5599999977665553 1   11122334778999999977766655   4899999998887754211


Q ss_pred             -CC-ceEEEEEeCCCCEEEEEECC-CcEEE
Q 047260          756 -EN-IISALAQSPVTGMVASASHD-SSVKL  782 (784)
Q Consensus       756 -~~-~V~slafspdg~~LaSgs~D-G~V~I  782 (784)
                       .. ....+.++|++..+.+.... +.|.+
T Consensus       250 ~~~~~~~~v~~~p~g~~~yv~~~~~~~V~v  279 (381)
T COG3391         250 VGSGAPRGVAVDPAGKAAYVANSQGGTVSV  279 (381)
T ss_pred             cccCCCCceeECCCCCEEEEEecCCCeEEE
Confidence             11 46678899999988877443 44544

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.15  E-value=0.00027  Score=79.70  Aligned_cols=185  Identities=16%  Similarity=0.240  Sum_probs=119.9

Q ss_pred             eeccCCCCCeEEEEEcCCCCcEEEEEeCC---CeEEEEeCCCCeeEEee--cCCeeEEEEecCCCEEEEEEC-CC--cEE
Q 047260          586 QAYTGHSSPIMSLDFHPKKTDLFCFCDND---NEIQYWSINPFLCTHIT--KGGTAQVRFQPRIGQLLAAAS-DK--VVS  657 (784)
Q Consensus       586 ~~~~~h~~~V~sl~~sp~~~~ll~sgs~d---g~I~iwDl~~~~~~~~~--~~~v~~v~fsp~~~~Ll~~s~-Dg--~I~  657 (784)
                      ..+......+..-+|+|++..+....-..   ..+.++|+++.......  .+....-.|+|+|+.|+.+.. ||  .|+
T Consensus       186 ~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy  265 (425)
T COG0823         186 QKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIY  265 (425)
T ss_pred             eEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEE
Confidence            33344455677788999988766654333   35899999876554444  455666789999999887766 54  577


Q ss_pred             EEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC----eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEE
Q 047260          658 IFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN----LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVV  733 (784)
Q Consensus       658 IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd----~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~  733 (784)
                      ++|+..+...+ +....+.-..-.|+|||++|+-.++.    .|.++|...+.. ..+......-..-.|+|+|++|+..
T Consensus       266 ~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~  343 (425)
T COG0823         266 LMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFE  343 (425)
T ss_pred             EEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEE
Confidence            77888776333 44333333467899999999988854    788888877655 3333332332377899999999888


Q ss_pred             ECC-C--eEEEEECCCCceEEecccCCceEEEEEeCCCCEEE
Q 047260          734 GGI-S--SLELWNMAENKSMTIAAHENIISALAQSPVTGMVA  772 (784)
Q Consensus       734 s~d-g--~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~La  772 (784)
                      +.. |  .|.+.|+.++.......+......-+|.++++.|+
T Consensus       344 ~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~  385 (425)
T COG0823         344 SSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIM  385 (425)
T ss_pred             eccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEE
Confidence            854 3  37777777666443333333333444555555443

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.14  E-value=0.0016  Score=66.34  Aligned_cols=142  Identities=10%  Similarity=-0.005  Sum_probs=95.8

Q ss_pred             CCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEE
Q 047260          519 GKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSL  598 (784)
Q Consensus       519 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl  598 (784)
                      ..+++.|+..+.+.-.|..+++.+..-. -...|.+-+.- -|++++.|++.|.+.+.+.+++..+........-.+. .
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~-a   99 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVR-A   99 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccc-e
Confidence            3478889999999999999998876542 23334333322 4778999999999999999998644333222111222 2


Q ss_pred             EEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCCe---eEEEEecCCCEEEEEECCCcEEEEECCCC
Q 047260          599 DFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGT---AQVRFQPRIGQLLAAASDKVVSIFDIETD  664 (784)
Q Consensus       599 ~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v---~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~  664 (784)
                      ...+++. ++..++.|+..+..|.++..++...+.+-   ..-++.|-...|+++...|.|.-......
T Consensus       100 ~~d~~~g-lIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~  167 (354)
T KOG4649|consen  100 QCDFDGG-LIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPY  167 (354)
T ss_pred             EEcCCCc-eEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCC
Confidence            2344444 88889999999999999998888766322   22346665566777777776665555443

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.07  E-value=5.8e-05  Score=87.71  Aligned_cols=190  Identities=16%  Similarity=0.224  Sum_probs=137.4

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEE
Q 047260          518 DGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMS  597 (784)
Q Consensus       518 dg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~s  597 (784)
                      ++..++.|+.-..+..+|+.+.+..+...-....|+-++.  +++++++|...|+|.+-|.++.+ ....+..|.+.|.+
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~-~iht~~aHs~siSD  222 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFE-TIHTFDAHSGSISD  222 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCc-eeeeeeccccceee
Confidence            3456777888888999999988887776555555666665  67899999999999999999866 78889999999988


Q ss_pred             EEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCE
Q 047260          598 LDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELV  677 (784)
Q Consensus       598 l~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V  677 (784)
                      ++..  |+ ++++|+..+.                              ...-..|..|+|||++..+.+.-+.-+.++ 
T Consensus       223 fDv~--GN-lLitCG~S~R------------------------------~~~l~~D~FvkVYDLRmmral~PI~~~~~P-  268 (1118)
T KOG1275|consen  223 FDVQ--GN-LLITCGYSMR------------------------------RYNLAMDPFVKVYDLRMMRALSPIQFPYGP-  268 (1118)
T ss_pred             eecc--CC-eEEEeecccc------------------------------cccccccchhhhhhhhhhhccCCcccccCc-
Confidence            8775  33 7777763321                              111223678899999987766655544444 


Q ss_pred             EEEEEcCC--CCEEEEEeCCeEEEEeC---CCC-ceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEEC
Q 047260          678 NYICWDTN--GDYLASVSQNLVKVWSM---ASG-ECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNM  744 (784)
Q Consensus       678 ~sl~~spd--g~~Lasgsdd~I~IwDl---~t~-~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl  744 (784)
                      .-+.|.|.  .+.+++.+.+...+.|.   .+. .-+.-+......+..+.+++++..++.+..+|.|.+|.-
T Consensus       269 ~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  269 QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence            44566663  34445555678888883   332 223344445566899999999999999999999999973

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.01  E-value=8.1e-05  Score=85.51  Aligned_cols=259  Identities=14%  Similarity=0.152  Sum_probs=149.5

Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCc-ceeeec
Q 047260          510 VTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPN-FCSQAY  588 (784)
Q Consensus       510 V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~-~~~~~~  588 (784)
                      +++++|+|..-.|+.|-.-|.+.||...+.+.......|..+|..+.|+++|..++|+..-|.|.+|...--. .....+
T Consensus        62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~  141 (1416)
T KOG3617|consen   62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNI  141 (1416)
T ss_pred             hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchh
Confidence            6779999998899999999999999999888777778899999999999999999999999999999876322 111111


Q ss_pred             cCCC--CC--eEEEEEcCCCCcE-----EEEEeCCCeEE-EEeCCCCeeEEeecCCeeEEEEecCCCEEEEEECCCcEEE
Q 047260          589 TGHS--SP--IMSLDFHPKKTDL-----FCFCDNDNEIQ-YWSINPFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSI  658 (784)
Q Consensus       589 ~~h~--~~--V~sl~~sp~~~~l-----l~sgs~dg~I~-iwDl~~~~~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~I  658 (784)
                      ..|.  ..  ..|...++++..+     +++.+++..+- .++.+........     .-.-.|+|..+++++.+|+|+.
T Consensus       142 ~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~-----~ksgv~~g~~F~~~~~~GtVyy  216 (1416)
T KOG3617|consen  142 MQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSD-----EKSGVPKGTEFLFAGKSGTVYY  216 (1416)
T ss_pred             hhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhccc-----cccCCCCCcEEEEEcCCceEEE
Confidence            1121  22  3344445553221     22223333332 4433321111100     0012467788888999999988


Q ss_pred             EECCCCeEEEEEe----------CCCCCEEEEEEcCCCCEEEEEeCC------eEEEEeCCCCce------------EE-
Q 047260          659 FDIETDRQTHSLQ----------GHAELVNYICWDTNGDYLASVSQN------LVKVWSMASGEC------------IQ-  709 (784)
Q Consensus       659 wDl~t~~~i~~l~----------~h~~~V~sl~~spdg~~Lasgsdd------~I~IwDl~t~~~------------i~-  709 (784)
                      .|-. ++.....+          +....|.++.-.-...++.+-..|      .+++-- +.|..            +. 
T Consensus       217 vdq~-g~~~~V~k~dS~vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sg-k~GgrqGgiA~sEssGvLr~  294 (1416)
T KOG3617|consen  217 VDQN-GRQRTVHKLDSEVQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSG-KLGGRQGGIACSESSGVLRK  294 (1416)
T ss_pred             EcCC-CcEEEEEEccchHHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhcc-ccCCccCccccccccccccC
Confidence            8844 33222222          111222222111111111111111      111100 00100            00 


Q ss_pred             --Ee-ccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCc--------eEEe---cccCCceEEEEEeCCCCEEEEEE
Q 047260          710 --EL-SSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENK--------SMTI---AAHENIISALAQSPVTGMVASAS  775 (784)
Q Consensus       710 --~l-~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~--------~~~~---~~h~~~V~slafspdg~~LaSgs  775 (784)
                        ++ ...+..+.|++++..+..++.+...|.+.+|--....        ...+   ....+.|+.+.|.|-...+++-+
T Consensus       295 ~eKyg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~avn~  374 (1416)
T KOG3617|consen  295 SEKYGLELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAAVNT  374 (1416)
T ss_pred             CcchhhhcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchhhhhh
Confidence              00 0124568999999999999999999999999533221        1122   23456799999998665544433

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.00  E-value=0.0077  Score=68.19  Aligned_cols=88  Identities=15%  Similarity=0.177  Sum_probs=69.6

Q ss_pred             eEEEEeCCCCce--EEEe-ccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceEEecccCCceEEEEEeCCCCEEE
Q 047260          696 LVKVWSMASGEC--IQEL-SSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIAAHENIISALAQSPVTGMVA  772 (784)
Q Consensus       696 ~I~IwDl~t~~~--i~~l-~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~La  772 (784)
                      ...+|++...+.  +... -.....|.+++++|+...++.|+.||+|.+||...+.... ..+.-.++.++|+|+|.+|+
T Consensus       237 d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~-~ka~~~P~~iaWHp~gai~~  315 (545)
T PF11768_consen  237 DSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLL-AKAEFIPTLIAWHPDGAIFV  315 (545)
T ss_pred             EEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeee-eeecccceEEEEcCCCcEEE
Confidence            356677655432  2111 1456789999999999999999999999999998775443 34556789999999999999


Q ss_pred             EEECCCcEEEeC
Q 047260          773 SASHDSSVKLWK  784 (784)
Q Consensus       773 Sgs~DG~V~IWd  784 (784)
                      +|+.-|.+.+||
T Consensus       316 V~s~qGelQ~FD  327 (545)
T PF11768_consen  316 VGSEQGELQCFD  327 (545)
T ss_pred             EEcCCceEEEEE
Confidence            999999999998

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.00  E-value=2.9e-06  Score=94.90  Aligned_cols=196  Identities=11%  Similarity=0.171  Sum_probs=128.4

Q ss_pred             CCceEEEEEcCC--CCEEEEEeCCCeEEEEECCCCce--eeecCCCCCCeEEEEEcc-CCCEEEEEeC----CCeEEEEc
Q 047260          507 NSKVTCCHFSSD--GKLLASSGHDRKVVLWNMDTLQT--ESTPEDHKSVVTDVRFRP-NSSQLATASV----DKSVRLWD  577 (784)
Q Consensus       507 ~~~V~~l~fspd--g~~Lasgs~Dg~I~IWd~~t~~~--~~~l~~h~~~It~i~fsp-dg~~Latgs~----Dg~I~IWd  577 (784)
                      ...+.|+++.-+  ..++++|..+|.|.+-.+.....  .....+|...+++++|++ |.+.||.|-.    |..+.|||
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd  135 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD  135 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence            445778877653  34789999999999988764322  234457888999999999 6677777632    56799999


Q ss_pred             CCCCc----ceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCC-C-eeEEeecCCeeEEEEecCCCEEEEEE
Q 047260          578 AANPN----FCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINP-F-LCTHITKGGTAQVRFQPRIGQLLAAA  651 (784)
Q Consensus       578 l~~~~----~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~-~-~~~~~~~~~v~~v~fsp~~~~Ll~~s  651 (784)
                      +.+.-    .......+......+++|..+.+ ++.+|.....+.++|++. . .+...-...+..+.+.|-....++..
T Consensus       136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~k-lvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~  214 (783)
T KOG1008|consen  136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTK-LVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSN  214 (783)
T ss_pred             cccccCCCccccccccccccCccccccccCcc-hhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceecc
Confidence            98751    11111112334566888985544 788888888999999983 2 22222223556677788544456666


Q ss_pred             CCCcEEEEE-CCCC-eEEEEEeCC----CCCEEEEEEcCCCC-EEEEEeCC--eEEEEeCC
Q 047260          652 SDKVVSIFD-IETD-RQTHSLQGH----AELVNYICWDTNGD-YLASVSQN--LVKVWSMA  703 (784)
Q Consensus       652 ~Dg~I~IwD-l~t~-~~i~~l~~h----~~~V~sl~~spdg~-~Lasgsdd--~I~IwDl~  703 (784)
                      .||.|.+|| .++- .++..+...    ...+..++|+|... .+++...+  +|++||+.
T Consensus       215 ~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  215 SDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             ccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            699999999 3332 222222211    22489999999543 45555544  99999985

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.97  E-value=0.00076  Score=76.44  Aligned_cols=225  Identities=8%  Similarity=0.099  Sum_probs=123.5

Q ss_pred             eEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEE-cCC
Q 047260          501 GCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLW-DAA  579 (784)
Q Consensus       501 ~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IW-dl~  579 (784)
                      +.+....-....+.++|+|+++++ +.||...|+.....+....     +.....+|.+++ .+|+-...++|.|+ +++
T Consensus        26 k~lg~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~   98 (443)
T PF04053_consen   26 KELGSCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAF-----GSGLSFVWSSRN-RYAVLESSSTIKIYKNFK   98 (443)
T ss_dssp             EEEEE-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEE-----EE-SEEEE-TSS-EEEEE-TTS-EEEEETTE
T ss_pred             ccCCCCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCccccc-----CceeEEEEecCc-cEEEEECCCeEEEEEcCc
Confidence            333445556889999999999988 5588888888554444322     345678899855 46666668899996 443


Q ss_pred             CCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCC-eeEEEEecCCCEEEEEECCCcEEE
Q 047260          580 NPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGG-TAQVRFQPRIGQLLAAASDKVVSI  658 (784)
Q Consensus       580 ~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~-v~~v~fsp~~~~Ll~~s~Dg~I~I  658 (784)
                      ...  ...+.. ...+..|..   |. +|+..+ ++.|.+||+.+.+.+...... +..+.|++++.+++..+. ..+.|
T Consensus        99 ~~~--~k~i~~-~~~~~~If~---G~-LL~~~~-~~~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g~~val~t~-~~i~i  169 (443)
T PF04053_consen   99 NEV--VKSIKL-PFSVEKIFG---GN-LLGVKS-SDFICFYDWETGKLIRRIDVSAVKYVIWSDDGELVALVTK-DSIYI  169 (443)
T ss_dssp             E-T--T------SS-EEEEE----SS-SEEEEE-TTEEEEE-TTT--EEEEESS-E-EEEEE-TTSSEEEEE-S--SEEE
T ss_pred             ccc--ceEEcC-CcccceEEc---Cc-EEEEEC-CCCEEEEEhhHcceeeEEecCCCcEEEEECCCCEEEEEeC-CeEEE
Confidence            322  111211 123444433   55 444444 448999999999999988866 699999999998888875 46777


Q ss_pred             EECCCC-----------eEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEEEeccCCCceEEEEEecCC
Q 047260          659 FDIETD-----------RQTHSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSY  727 (784)
Q Consensus       659 wDl~t~-----------~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg  727 (784)
                      ++....           .....+......|.+.+|..+ -++.+. .+.|+-  +..|+. .++..-..++.-+.+.+..
T Consensus       170 l~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT-~~~lkY--l~~Ge~-~~i~~ld~~~yllgy~~~~  244 (443)
T PF04053_consen  170 LKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTT-SNHLKY--LVNGET-GIIAHLDKPLYLLGYLPKE  244 (443)
T ss_dssp             EEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE--TTEEEE--EETTEE-EEEEE-SS--EEEEEETTT
T ss_pred             EEecchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEc-CCeEEE--EEcCCc-ceEEEcCCceEEEEEEccC
Confidence            664432           122333323578899999877 444443 336666  334432 2222334567778888877


Q ss_pred             CEEEEEECCCeEEEEECCC
Q 047260          728 STLLVVGGISSLELWNMAE  746 (784)
Q Consensus       728 ~~L~s~s~dg~I~Iwdl~~  746 (784)
                      +.++....|+.|..+.+..
T Consensus       245 ~~ly~~Dr~~~v~~~~ld~  263 (443)
T PF04053_consen  245 NRLYLIDRDGNVISYELDL  263 (443)
T ss_dssp             TEEEEE-TT--EEEEE--H
T ss_pred             CEEEEEECCCCEEEEEECH
Confidence            8888888888888887653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.96  E-value=0.0046  Score=66.56  Aligned_cols=254  Identities=9%  Similarity=0.107  Sum_probs=154.5

Q ss_pred             CeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeC----------CCeEEEEcCCCCcceeeeccCCC------
Q 047260          529 RKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASV----------DKSVRLWDAANPNFCSQAYTGHS------  592 (784)
Q Consensus       529 g~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~----------Dg~I~IWdl~~~~~~~~~~~~h~------  592 (784)
                      +.|+|+|.++++.+-.+..  +-.-.+..+|+++.+++++.          .-.|.+||..+-.....+.....      
T Consensus        17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~   94 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV   94 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred             ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence            4799999999888777642  23344678999999887532          33689999998653222211111      


Q ss_pred             CCeEEEEEcCCCCcEEEEE-eCCCeEEEEeCCCCeeEEeecCCeeEEEEecCCCEEEEEECCCcEEEEECC-CCeEEEEE
Q 047260          593 SPIMSLDFHPKKTDLFCFC-DNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIE-TDRQTHSL  670 (784)
Q Consensus       593 ~~V~sl~~sp~~~~ll~sg-s~dg~I~iwDl~~~~~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~-t~~~i~~l  670 (784)
                      .....+.++.+++++++.- +-...|.|.|+...+.+....-+-+...+-.....+.+.|.||.+..+.+. .|+.....
T Consensus        95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~  174 (342)
T PF06433_consen   95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKS  174 (342)
T ss_dssp             --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEE
T ss_pred             ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEee
Confidence            1223356677777555442 234567778888877777776555555553334678899999999999987 45443222


Q ss_pred             ----eCCCCCE-EEEEEcC-CCCEEEEEeCCeEEEEeCCCCce--EEEeccC----------CCceEEEEEecCCCEEEE
Q 047260          671 ----QGHAELV-NYICWDT-NGDYLASVSQNLVKVWSMASGEC--IQELSSN----------GNQFHSCVFHPSYSTLLV  732 (784)
Q Consensus       671 ----~~h~~~V-~sl~~sp-dg~~Lasgsdd~I~IwDl~t~~~--i~~l~~~----------~~~I~sl~fspdg~~L~s  732 (784)
                          .....++ ..-.+.. ++.+++..-+|.|+-.|+.....  ...+...          .+...-+++++....|++
T Consensus       175 t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyv  254 (342)
T PF06433_consen  175 TKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYV  254 (342)
T ss_dssp             EEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEE
T ss_pred             ccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEE
Confidence                1122222 2333443 34566666677888888876542  2222211          122345778876666655


Q ss_pred             EEC--------CC--eEEEEECCCCceEEecccCCceEEEEEeCCCC-EEEEEE-CCCcEEEeC
Q 047260          733 VGG--------IS--SLELWNMAENKSMTIAAHENIISALAQSPVTG-MVASAS-HDSSVKLWK  784 (784)
Q Consensus       733 ~s~--------dg--~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~-~LaSgs-~DG~V~IWd  784 (784)
                      .-.        |+  .|-+||+.+++.+.-..-...+.+|.++.+.+ +|++.+ .++.|.|||
T Consensus       255 LMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D  318 (342)
T PF06433_consen  255 LMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYD  318 (342)
T ss_dssp             EEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred             EecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEe
Confidence            422        11  47788999999885555456688999998876 666554 578899986

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.94  E-value=0.00085  Score=75.77  Aligned_cols=202  Identities=16%  Similarity=0.184  Sum_probs=129.0

Q ss_pred             EEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeC---C-CeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCc
Q 047260          531 VVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASV---D-KSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTD  606 (784)
Q Consensus       531 I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~---D-g~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~  606 (784)
                      +.+-|.+ +.....+..-...+..-+|+|++..++..+.   . ..+.++|++++......-  ..+.-....|+|++..
T Consensus       175 l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~--~~g~~~~P~fspDG~~  251 (425)
T COG0823         175 LALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN--FNGNNGAPAFSPDGSK  251 (425)
T ss_pred             EEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec--cCCccCCccCCCCCCE
Confidence            4444444 4555555555667788899999887665532   2 358999998866322211  2333456789999999


Q ss_pred             EEEEEeCCCe--EEEEeCCCCeeEEeec--CCeeEEEEecCCCEEEEEEC-CC--cEEEEECCCCeEEEEEeCCCCCEEE
Q 047260          607 LFCFCDNDNE--IQYWSINPFLCTHITK--GGTAQVRFQPRIGQLLAAAS-DK--VVSIFDIETDRQTHSLQGHAELVNY  679 (784)
Q Consensus       607 ll~sgs~dg~--I~iwDl~~~~~~~~~~--~~v~~v~fsp~~~~Ll~~s~-Dg--~I~IwDl~t~~~i~~l~~h~~~V~s  679 (784)
                      ++++...||.  |+++|+..........  +..+.-.|+|+|+.++..+. .|  .|.++|++..... .+......-..
T Consensus       252 l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~-riT~~~~~~~~  330 (425)
T COG0823         252 LAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT-RLTFSGGGNSN  330 (425)
T ss_pred             EEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCcee-EeeccCCCCcC
Confidence            9998888886  5555776655333222  23345579999999888876 34  4677777766543 33322222237


Q ss_pred             EEEcCCCCEEEEEe--CC--eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCC
Q 047260          680 ICWDTNGDYLASVS--QN--LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGIS  737 (784)
Q Consensus       680 l~~spdg~~Lasgs--dd--~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg  737 (784)
                      -.|+|||++|+..+  ++  .|.+.|+.++..+..+. .......-.|.+++..++..+..+
T Consensus       331 p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s~~~  391 (425)
T COG0823         331 PVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSSGQG  391 (425)
T ss_pred             ccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEeccCC
Confidence            78999999999877  44  58888887776544332 223334557788888777666543

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.90  E-value=0.014  Score=64.05  Aligned_cols=267  Identities=12%  Similarity=0.166  Sum_probs=135.2

Q ss_pred             cccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCC-ceEEEEEcCCCCEEEE
Q 047260          446 LLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNS-KVTCCHFSSDGKLLAS  524 (784)
Q Consensus       446 ~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~-~V~~l~fspdg~~Las  524 (784)
                      +..+..+|+.++..|+.-.+|...-..                         .++.-|..+.+ ......++++.+.|+.
T Consensus        43 ft~dG~kllF~s~~dg~~nly~lDL~t-------------------------~~i~QLTdg~g~~~~g~~~s~~~~~~~Y   97 (386)
T PF14583_consen   43 FTDDGRKLLFASDFDGNRNLYLLDLAT-------------------------GEITQLTDGPGDNTFGGFLSPDDRALYY   97 (386)
T ss_dssp             B-TTS-EEEEEE-TTSS-EEEEEETTT--------------------------EEEE---SS-B-TTT-EE-TTSSEEEE
T ss_pred             cCCCCCEEEEEeccCCCcceEEEEccc-------------------------CEEEECccCCCCCccceEEecCCCeEEE
Confidence            456788888888888887777663221                         12222332221 1224566788888776


Q ss_pred             EeCCCeEEEEECCCCceeeecCCCCCCeEEEEEcc--CCCEEEEEeC----------------------CCeEEEEcCCC
Q 047260          525 SGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRP--NSSQLATASV----------------------DKSVRLWDAAN  580 (784)
Q Consensus       525 gs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fsp--dg~~Latgs~----------------------Dg~I~IWdl~~  580 (784)
                      ...+..|+-.|+.+.+....+......+-...|..  ++..++-.-.                      .+.|.-.|+.+
T Consensus        98 v~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~t  177 (386)
T PF14583_consen   98 VKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKT  177 (386)
T ss_dssp             EETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT
T ss_pred             EECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCC
Confidence            66667899999999887777666666665566643  5555443211                      12344456665


Q ss_pred             CcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCC---C-eEEEEeC--CCCeeEEeec----CCeeEEEEecCCCEEEEE
Q 047260          581 PNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDND---N-EIQYWSI--NPFLCTHITK----GGTAQVRFQPRIGQLLAA  650 (784)
Q Consensus       581 ~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~d---g-~I~iwDl--~~~~~~~~~~----~~v~~v~fsp~~~~Ll~~  650 (784)
                      ++  ...+......+..+.|+|..+.+|+.|-+.   . .-+||-+  +........+    ..+..=-|.++|..|+.-
T Consensus       178 G~--~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~  255 (386)
T PF14583_consen  178 GE--RKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYD  255 (386)
T ss_dssp             ----EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEE
T ss_pred             Cc--eeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEE
Confidence            54  222333456678899999999899888642   2 1255544  4332222222    122333489999887664


Q ss_pred             EC-----CCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-----------------eEEEEeCCCCceE
Q 047260          651 AS-----DKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-----------------LVKVWSMASGECI  708 (784)
Q Consensus       651 s~-----Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-----------------~I~IwDl~t~~~i  708 (784)
                      +.     +..|.-+|+.+++.......  .....+-.++||++++.-+.+                 .|+++++..+...
T Consensus       256 ~~~~~~~~~~i~~~d~~t~~~~~~~~~--p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~  333 (386)
T PF14583_consen  256 SYTPGGQDFWIAGYDPDTGERRRLMEM--PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFR  333 (386)
T ss_dssp             EEETTT--EEEEEE-TTT--EEEEEEE---SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEE
T ss_pred             eecCCCCceEEEeeCCCCCCceEEEeC--CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCcee
Confidence            43     34677788888765433221  234455667899988763321                 4667788766532


Q ss_pred             EEeccCC---------Cc--eEEEEEecCCCEEEEEEC-CCeEEEE
Q 047260          709 QELSSNG---------NQ--FHSCVFHPSYSTLLVVGG-ISSLELW  742 (784)
Q Consensus       709 ~~l~~~~---------~~--I~sl~fspdg~~L~s~s~-dg~I~Iw  742 (784)
                      . +..|.         ..  =....|+||+++++..+. .|...||
T Consensus       334 ~-l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY  378 (386)
T PF14583_consen  334 K-LARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVY  378 (386)
T ss_dssp             E-EEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEE
T ss_pred             e-eeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEE
Confidence            1 11111         11  245789999999776665 4654444

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.89  E-value=0.0085  Score=64.55  Aligned_cols=236  Identities=14%  Similarity=0.127  Sum_probs=143.4

Q ss_pred             EEEEcCCCCEEEEEe----------CCCeEEEEECCCCceeeecCCC---C----CCeEEEEEccCCCEEEEEeC--CCe
Q 047260          512 CCHFSSDGKLLASSG----------HDRKVVLWNMDTLQTESTPEDH---K----SVVTDVRFRPNSSQLATASV--DKS  572 (784)
Q Consensus       512 ~l~fspdg~~Lasgs----------~Dg~I~IWd~~t~~~~~~l~~h---~----~~It~i~fspdg~~Latgs~--Dg~  572 (784)
                      .+.++||++.++++.          ..-.|.+||..+......+.--   .    .....+.++.|++++++...  --.
T Consensus        40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S  119 (342)
T PF06433_consen   40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATS  119 (342)
T ss_dssp             EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred             ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCe
Confidence            366789999888753          3446999999998777654311   1    12244678888888877644  457


Q ss_pred             EEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCC-CCeeEEee----cC---C-eeEEEEecC
Q 047260          573 VRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSIN-PFLCTHIT----KG---G-TAQVRFQPR  643 (784)
Q Consensus       573 I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~-~~~~~~~~----~~---~-v~~v~fsp~  643 (784)
                      |.|-|+...+. ...+.- .   -|....|.++.-|.+-+.||.+....+. .++.....    ..   + ...-.+...
T Consensus       120 VtVVDl~~~kv-v~ei~~-P---GC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~  194 (342)
T PF06433_consen  120 VTVVDLAAKKV-VGEIDT-P---GCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRD  194 (342)
T ss_dssp             EEEEETTTTEE-EEEEEG-T---SEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETT
T ss_pred             EEEEECCCCce-eeeecC-C---CEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECC
Confidence            88999988663 333321 1   1223334444456666779998888887 33333221    11   1 112234455


Q ss_pred             CCEEEEEECCCcEEEEECCCCeE--EEEEeCC----------CCCEEEEEEcCCCCEEEEEe---------CC--eEEEE
Q 047260          644 IGQLLAAASDKVVSIFDIETDRQ--THSLQGH----------AELVNYICWDTNGDYLASVS---------QN--LVKVW  700 (784)
Q Consensus       644 ~~~Ll~~s~Dg~I~IwDl~t~~~--i~~l~~h----------~~~V~sl~~spdg~~Lasgs---------dd--~I~Iw  700 (784)
                      +..++-.+.+|.|+-.|+.....  ...+..-          .+...-+++++....|++.-         +.  .|-++
T Consensus       195 ~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~  274 (342)
T PF06433_consen  195 GGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVY  274 (342)
T ss_dssp             TTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEE
T ss_pred             CCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEE
Confidence            66777788899999999876542  2222210          11223366776554444321         11  78999


Q ss_pred             eCCCCceEEEeccCCCceEEEEEecCCC-EEEEEE-CCCeEEEEECCCCceEEec
Q 047260          701 SMASGECIQELSSNGNQFHSCVFHPSYS-TLLVVG-GISSLELWNMAENKSMTIA  753 (784)
Q Consensus       701 Dl~t~~~i~~l~~~~~~I~sl~fspdg~-~L~s~s-~dg~I~Iwdl~~~~~~~~~  753 (784)
                      |+.+++.+..+... .++.++.++.+.+ +|++.+ .++.|.+||..+++.+...
T Consensus       275 D~~t~krv~Ri~l~-~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~  328 (342)
T PF06433_consen  275 DLKTHKRVARIPLE-HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSI  328 (342)
T ss_dssp             ETTTTEEEEEEEEE-EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE
T ss_pred             ECCCCeEEEEEeCC-CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeeh
Confidence            99999999998753 4577999998775 555554 4689999999999887443

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.88  E-value=0.0043  Score=68.77  Aligned_cols=227  Identities=18%  Similarity=0.209  Sum_probs=129.2

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCC-----------------CCCeEEEEEccCCCEEEEEeC
Q 047260          507 NSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDH-----------------KSVVTDVRFRPNSSQLATASV  569 (784)
Q Consensus       507 ~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h-----------------~~~It~i~fspdg~~Latgs~  569 (784)
                      ...+....|||+|+.||... ++.|.+++..++.....-..-                 -+.-..+-|+||+++|+....
T Consensus        42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~  120 (353)
T PF00930_consen   42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF  120 (353)
T ss_dssp             ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred             ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence            56788999999999998875 678999998776443322111                 122356889999999988643


Q ss_pred             CC------------------------------------eEEEEcCCCCccee-eec---cCCCCCeEEEEEcCCCCcEE-
Q 047260          570 DK------------------------------------SVRLWDAANPNFCS-QAY---TGHSSPIMSLDFHPKKTDLF-  608 (784)
Q Consensus       570 Dg------------------------------------~I~IWdl~~~~~~~-~~~---~~h~~~V~sl~~sp~~~~ll-  608 (784)
                      |.                                    .+.|+|+.+++... ...   ..-...+..+.|.+++..++ 
T Consensus       121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~  200 (353)
T PF00930_consen  121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWV  200 (353)
T ss_dssp             E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred             CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEE
Confidence            31                                    13334444433211 101   12344577888988877333 


Q ss_pred             EEEeCCC---eEEEEeCCCCeeEEeec-------CCeeEEEEe-cCCCEEEEEE-CCC--cEEEEECCCCeEEEEEeCCC
Q 047260          609 CFCDNDN---EIQYWSINPFLCTHITK-------GGTAQVRFQ-PRIGQLLAAA-SDK--VVSIFDIETDRQTHSLQGHA  674 (784)
Q Consensus       609 ~sgs~dg---~I~iwDl~~~~~~~~~~-------~~v~~v~fs-p~~~~Ll~~s-~Dg--~I~IwDl~t~~~i~~l~~h~  674 (784)
                      .....+.   .+.++|..++.+...+.       .....+.+. +++..++..+ .+|  .|.+++...+.. ..+....
T Consensus       201 ~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~-~~lT~G~  279 (353)
T PF00930_consen  201 QWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKP-RQLTSGD  279 (353)
T ss_dssp             EEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEE-EESS-SS
T ss_pred             EEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccce-eccccCc
Confidence            3344332   45666776544332222       122355554 6666655444 455  466667666653 3555455


Q ss_pred             CCEEE-EEEcCCCCEEEE-EeC-C----eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEEC
Q 047260          675 ELVNY-ICWDTNGDYLAS-VSQ-N----LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGG  735 (784)
Q Consensus       675 ~~V~s-l~~spdg~~Las-gsd-d----~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~  735 (784)
                      -.|.. +.|+++++.|+. +.. +    .|...++..+..+..+......-..+.|+|++++++....
T Consensus       280 ~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s  347 (353)
T PF00930_consen  280 WEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTYS  347 (353)
T ss_dssp             S-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred             eeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEEc
Confidence            56644 678888776554 432 1    6777777734455566554444369999999998765543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.88  E-value=0.0099  Score=69.37  Aligned_cols=186  Identities=11%  Similarity=0.043  Sum_probs=112.3

Q ss_pred             CCEEEEEeCCCeEEEEECCCCceeeecCCCC-CCeE---E-------EEEccCCCEEEEEeCCCeEEEEcCCCCcceeee
Q 047260          519 GKLLASSGHDRKVVLWNMDTLQTESTPEDHK-SVVT---D-------VRFRPNSSQLATASVDKSVRLWDAANPNFCSQA  587 (784)
Q Consensus       519 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~-~~It---~-------i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~  587 (784)
                      +..|++++.++.|+-+|..+++.+..+.... ..+.   +       +++  .+..++.++.|+.|...|.++++.+-..
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~  146 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK  146 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence            4467777778899999999999887764321 1111   1       122  2346778888999999999998854332


Q ss_pred             ccC-CC--CCeEE-EEEcCCCCcEEEEEe-----CCCeEEEEeCCCCeeEEeecCC------------------------
Q 047260          588 YTG-HS--SPIMS-LDFHPKKTDLFCFCD-----NDNEIQYWSINPFLCTHITKGG------------------------  634 (784)
Q Consensus       588 ~~~-h~--~~V~s-l~~sp~~~~ll~sgs-----~dg~I~iwDl~~~~~~~~~~~~------------------------  634 (784)
                      -.. +.  ..+.+ ..+. ++ .+++..+     .+|.|..+|.++++.+-.+...                        
T Consensus       147 ~~~~~~~~~~~tssP~v~-~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~  224 (527)
T TIGR03075       147 KNGDYKAGYTITAAPLVV-KG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWP  224 (527)
T ss_pred             ccccccccccccCCcEEE-CC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCC
Confidence            221 11  01111 1111 22 2333222     2688999999887766443310                        


Q ss_pred             ----------e-eEEEEecCCCEEEEEECC-----C-----------cEEEEECCCCeEEEEEeCCCCCE---------E
Q 047260          635 ----------T-AQVRFQPRIGQLLAAASD-----K-----------VVSIFDIETDRQTHSLQGHAELV---------N  678 (784)
Q Consensus       635 ----------v-~~v~fsp~~~~Ll~~s~D-----g-----------~I~IwDl~t~~~i~~l~~h~~~V---------~  678 (784)
                                + ..+++.+..+.++.+...     +           .|.-.|+++++....+......+         .
T Consensus       225 ~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~  304 (527)
T TIGR03075       225 GDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMI  304 (527)
T ss_pred             CCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcE
Confidence                      0 123667777777776622     2           68888999999888776422211         1


Q ss_pred             EEEEcCCCC---EEEEEeC-CeEEEEeCCCCceE
Q 047260          679 YICWDTNGD---YLASVSQ-NLVKVWSMASGECI  708 (784)
Q Consensus       679 sl~~spdg~---~Lasgsd-d~I~IwDl~t~~~i  708 (784)
                      -+.+..+|+   .++.+.. +.+.+.|.++|+.+
T Consensus       305 l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       305 LFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             EEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence            122334666   5556654 49999999999886

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.86  E-value=0.012  Score=61.58  Aligned_cols=198  Identities=14%  Similarity=0.190  Sum_probs=114.8

Q ss_pred             EeEeecCCCceEEEEEcCCCC-EEEEEeCCCeEEEEECCCCceeeecCCC-CCCeEEEEEccCCCEEEEEeCCCeEEEEc
Q 047260          500 VGCIRSRNSKVTCCHFSSDGK-LLASSGHDRKVVLWNMDTLQTESTPEDH-KSVVTDVRFRPNSSQLATASVDKSVRLWD  577 (784)
Q Consensus       500 i~~l~~H~~~V~~l~fspdg~-~Lasgs~Dg~I~IWd~~t~~~~~~l~~h-~~~It~i~fspdg~~Latgs~Dg~I~IWd  577 (784)
                      ...+.+-...|..|+|+|+.+ ++++....+.|..++.+ ++.++.+.-. .+..-.|++..++.++++.-.++.+.+++
T Consensus        14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~   92 (248)
T PF06977_consen   14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFT   92 (248)
T ss_dssp             EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred             eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence            345666667799999999755 66777788889888875 7777776533 35678899988887777665689999998


Q ss_pred             CCCCcce--e---e-----eccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCC----CeeEE----------eecC
Q 047260          578 AANPNFC--S---Q-----AYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINP----FLCTH----------ITKG  633 (784)
Q Consensus       578 l~~~~~~--~---~-----~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~----~~~~~----------~~~~  633 (784)
                      +......  .   .     ....+...+-.++|.+.+..++++.. ..-..+|.++.    .....          ....
T Consensus        93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE-~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (248)
T PF06977_consen   93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKE-RKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVR  171 (248)
T ss_dssp             E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEE-SSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS
T ss_pred             EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeC-CCChhhEEEccccCccceeeccccccccccceec
Confidence            8432211  0   1     11134556899999999887777654 43344444432    11110          1124


Q ss_pred             CeeEEEEecCCCEEEEEEC-CCcEEEEECCCCeEEEEEeCCC---------CCEEEEEEcCCCCEEEEEeCCeEEEE
Q 047260          634 GTAQVRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHSLQGHA---------ELVNYICWDTNGDYLASVSQNLVKVW  700 (784)
Q Consensus       634 ~v~~v~fsp~~~~Ll~~s~-Dg~I~IwDl~t~~~i~~l~~h~---------~~V~sl~~spdg~~Lasgsdd~I~Iw  700 (784)
                      .+..+.++|..+.|++-+. +..|.++| ..++.+..+.-..         ...-.|+|+++|++.++..-+..++|
T Consensus       172 d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f  247 (248)
T PF06977_consen  172 DLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYRF  247 (248)
T ss_dssp             ---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred             cccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEEEe
Confidence            5678899999888777766 68888899 6677666554222         24678999999988877765555544

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.86  E-value=0.0052  Score=68.87  Aligned_cols=215  Identities=14%  Similarity=0.139  Sum_probs=154.0

Q ss_pred             ceEEEEEcCCCCE-EEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeC---CCeEEEEcCCCCcce
Q 047260          509 KVTCCHFSSDGKL-LASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASV---DKSVRLWDAANPNFC  584 (784)
Q Consensus       509 ~V~~l~fspdg~~-Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~---Dg~I~IWdl~~~~~~  584 (784)
                      .-.+++++++++. +++...+..|.+.|..+.+.......-. ....++++++++.++.+..   ++++.+.|..+.+..
T Consensus        75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~  153 (381)
T COG3391          75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVT  153 (381)
T ss_pred             cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEE
Confidence            3457788888884 4455556889999988777666553222 6678999999988877765   688889998887755


Q ss_pred             eeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEE-------eecCCeeEEEEecCCCEEEEEECC---C
Q 047260          585 SQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTH-------ITKGGTAQVRFQPRIGQLLAAASD---K  654 (784)
Q Consensus       585 ~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~-------~~~~~v~~v~fsp~~~~Ll~~s~D---g  654 (784)
                      .....+. .+ ..+++.|++..++++-..++.|.+.|........       ........+.+.+++.++++....   +
T Consensus       154 ~~~~vG~-~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~  231 (381)
T COG3391         154 ATIPVGN-TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSN  231 (381)
T ss_pred             EEEecCC-Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCc
Confidence            4433332 33 8999999999888877789999999988766653       112344678899999988777764   5


Q ss_pred             cEEEEECCCCeEEEEEeCCCC-CEEEEEEcCCCCEEEEEeC--CeEEEEeCCCCceEEEeccCCC---ceEEEEEecC
Q 047260          655 VVSIFDIETDRQTHSLQGHAE-LVNYICWDTNGDYLASVSQ--NLVKVWSMASGECIQELSSNGN---QFHSCVFHPS  726 (784)
Q Consensus       655 ~I~IwDl~t~~~i~~l~~h~~-~V~sl~~spdg~~Lasgsd--d~I~IwDl~t~~~i~~l~~~~~---~I~sl~fspd  726 (784)
                      .+.+.|..++........-.. ....+..+|+|.++.+...  +.+.+.|..+......+.....   .+..+++.+.
T Consensus       232 ~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~  309 (381)
T COG3391         232 NVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL  309 (381)
T ss_pred             eEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence            999999998877665221111 4566889999999888753  4999999998877776654322   3455555544

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.86  E-value=0.014  Score=62.00  Aligned_cols=221  Identities=13%  Similarity=0.158  Sum_probs=127.1

Q ss_pred             CCCCEEEEEeCCCeEEEEECC-CCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeee--------
Q 047260          517 SDGKLLASSGHDRKVVLWNMD-TLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQA--------  587 (784)
Q Consensus       517 pdg~~Lasgs~Dg~I~IWd~~-t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~--------  587 (784)
                      ..++.|+.|+.+| |.+++.. ........  +...|..+...++-+.|++-+ |+.++++++..-......        
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~   80 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS   80 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence            3577899999999 9999993 33333332  333499999999877777665 599999998764322210        


Q ss_pred             -----ccCCCCCeEEEE--EcCCCCcEEEEEeCCCeEEEEeCCCC-----eeEEe--ecCCeeEEEEecCCCEEEEEECC
Q 047260          588 -----YTGHSSPIMSLD--FHPKKTDLFCFCDNDNEIQYWSINPF-----LCTHI--TKGGTAQVRFQPRIGQLLAAASD  653 (784)
Q Consensus       588 -----~~~h~~~V~sl~--~sp~~~~ll~sgs~dg~I~iwDl~~~-----~~~~~--~~~~v~~v~fsp~~~~Ll~~s~D  653 (784)
                           .......+..++  -...+...++++. ...|.+|.+...     .....  ....+..+.|.  ++.++++.. 
T Consensus        81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~-  156 (275)
T PF00780_consen   81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTS-  156 (275)
T ss_pred             ccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeC-
Confidence                 112223344444  1223333444333 458888776542     23333  33677888888  456666664 


Q ss_pred             CcEEEEECCCCeEEEEEeCC------------CCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEE--EeccCCCceE
Q 047260          654 KVVSIFDIETDRQTHSLQGH------------AELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQ--ELSSNGNQFH  719 (784)
Q Consensus       654 g~I~IwDl~t~~~i~~l~~h------------~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~--~l~~~~~~I~  719 (784)
                      +...+.|+.++.....+...            ..++..+.. +++++|++ .++.-.+.|. .|+..+  .+.-. ....
T Consensus       157 ~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~-~~~~g~fv~~-~G~~~r~~~i~W~-~~p~  232 (275)
T PF00780_consen  157 KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLC-YDNIGVFVNK-NGEPSRKSTIQWS-SAPQ  232 (275)
T ss_pred             CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEE-ecceEEEEcC-CCCcCcccEEEcC-Cchh
Confidence            55888999876554333211            123333333 34566654 3443333443 343332  23222 2445


Q ss_pred             EEEEecCCCEEEEEECCCeEEEEECCCCceEEe
Q 047260          720 SCVFHPSYSTLLVVGGISSLELWNMAENKSMTI  752 (784)
Q Consensus       720 sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~  752 (784)
                      .+++.  .++|++.+.+ .|.||++.+++.+..
T Consensus       233 ~~~~~--~pyli~~~~~-~iEV~~~~~~~lvQ~  262 (275)
T PF00780_consen  233 SVAYS--SPYLIAFSSN-SIEVRSLETGELVQT  262 (275)
T ss_pred             EEEEE--CCEEEEECCC-EEEEEECcCCcEEEE
Confidence            56663  3477776664 599999999987633

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.83  E-value=0.02  Score=64.69  Aligned_cols=203  Identities=13%  Similarity=0.092  Sum_probs=108.6

Q ss_pred             eEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcc-----eeeeccCCCCCeEEEEEcCCC
Q 047260          530 KVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNF-----CSQAYTGHSSPIMSLDFHPKK  604 (784)
Q Consensus       530 ~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~-----~~~~~~~h~~~V~sl~~sp~~  604 (784)
                      .|.||+.. |+.+..+.--.+.|.++.|+.+. .|++...||.+++||+.....     ......-....+..+.+..+|
T Consensus        62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G  139 (410)
T PF04841_consen   62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNG  139 (410)
T ss_pred             EEEEECCC-CCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCC
Confidence            48999876 56666654344899999998754 566777999999999863220     000001111222222333233


Q ss_pred             CcEEEEEeCCCeEEEE-eCCCCeeEEee---cCCee---------E-EEEecCCCEEEEEECCCcEEEEECCCCeEEEEE
Q 047260          605 TDLFCFCDNDNEIQYW-SINPFLCTHIT---KGGTA---------Q-VRFQPRIGQLLAAASDKVVSIFDIETDRQTHSL  670 (784)
Q Consensus       605 ~~ll~sgs~dg~I~iw-Dl~~~~~~~~~---~~~v~---------~-v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l  670 (784)
                        +++.. .++.+.+. +..........   .....         . ..+..+....+....++.|.+.+-...+.   +
T Consensus       140 --ivvLt-~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i  213 (410)
T PF04841_consen  140 --IVVLT-GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I  213 (410)
T ss_pred             --EEEEC-CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---c
Confidence              33332 23444333 22211111110   00000         0 12333444444444555555444322111   1


Q ss_pred             eCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccC-CCceEEEEEecCCCEEEEEECCCeEEEEE
Q 047260          671 QGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSN-GNQFHSCVFHPSYSTLLVVGGISSLELWN  743 (784)
Q Consensus       671 ~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~-~~~I~sl~fspdg~~L~s~s~dg~I~Iwd  743 (784)
                      . ..+++..+++||++++||.-.++ .+.|.+..-.+.+.++... ......+.|+.++..++.-  ...|.++.
T Consensus       214 ~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~--~~~l~lvg  285 (410)
T PF04841_consen  214 D-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW--EDELLLVG  285 (410)
T ss_pred             c-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEe--CCEEEEEC
Confidence            1 34689999999999999988864 8888887666677666554 3456777887765433222  33455544

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.81  E-value=9.9e-05  Score=83.02  Aligned_cols=76  Identities=18%  Similarity=0.268  Sum_probs=65.6

Q ss_pred             cCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCc
Q 047260          505 SRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPN  582 (784)
Q Consensus       505 ~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~  582 (784)
                      .....|.|++++|+.+.|+.|+.||.|.+||...+....  ..+.-..+.++|+|+|.+|++|+..|.+.+||+.-..
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~--~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp  332 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLL--AKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP  332 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeee--eeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence            478899999999999999999999999999998654332  2455668999999999999999999999999987644

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.80  E-value=0.0071  Score=64.29  Aligned_cols=212  Identities=13%  Similarity=0.124  Sum_probs=123.3

Q ss_pred             CCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEE----------
Q 047260          560 NSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTH----------  629 (784)
Q Consensus       560 dg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~----------  629 (784)
                      .++.|+.|+.+| |.++++..........  +...|..+...++-+.+++.+  |+.++++++.......          
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs--d~~l~~~~L~~l~~~~~~~~~~~~~~   80 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS--DGQLYVYDLDSLEPVSTSAPLAFPKS   80 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc--CCccEEEEchhhcccccccccccccc
Confidence            577899999988 8999984333233322  233499999999877666554  5999999987533322          


Q ss_pred             -----eec--CCeeEEE--EecCCCEEEEEECCCcEEEEECCCC-----eEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC
Q 047260          630 -----ITK--GGTAQVR--FQPRIGQLLAAASDKVVSIFDIETD-----RQTHSLQGHAELVNYICWDTNGDYLASVSQN  695 (784)
Q Consensus       630 -----~~~--~~v~~v~--fsp~~~~Ll~~s~Dg~I~IwDl~t~-----~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd  695 (784)
                           ...  .++..++  -...+...+++.....|.+|.....     +..+.+. -...+.+++|.  +..|+.+..+
T Consensus        81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~  157 (275)
T PF00780_consen   81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSK  157 (275)
T ss_pred             ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCC
Confidence                 111  2233333  1234455666666679998887653     3445554 45778889998  6678888788


Q ss_pred             eEEEEeCCCCceEEEeccCC-----------CceEEEEEecCCCEEEEEECCCeEEEEECCCCceE-EecccCCceEEEE
Q 047260          696 LVKVWSMASGECIQELSSNG-----------NQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM-TIAAHENIISALA  763 (784)
Q Consensus       696 ~I~IwDl~t~~~i~~l~~~~-----------~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~sla  763 (784)
                      ...+.|+.++.....+....           .....+.--+++.+|++.  +..-.+.|....... ....-...+.+++
T Consensus       158 ~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~--~~~g~fv~~~G~~~r~~~i~W~~~p~~~~  235 (275)
T PF00780_consen  158 GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY--DNIGVFVNKNGEPSRKSTIQWSSAPQSVA  235 (275)
T ss_pred             ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEe--cceEEEEcCCCCcCcccEEEcCCchhEEE
Confidence            89999999776544332111           112223333445555543  223333344332221 1122233555666


Q ss_pred             EeCCCCEEEEEECCCcEEEeC
Q 047260          764 QSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       764 fspdg~~LaSgs~DG~V~IWd  784 (784)
                      +.  ..+|+..+.+ .|-||+
T Consensus       236 ~~--~pyli~~~~~-~iEV~~  253 (275)
T PF00780_consen  236 YS--SPYLIAFSSN-SIEVRS  253 (275)
T ss_pred             EE--CCEEEEECCC-EEEEEE
Confidence            64  4577766554 487774

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.80  E-value=1.1e-05  Score=90.29  Aligned_cols=195  Identities=22%  Similarity=0.320  Sum_probs=135.2

Q ss_pred             CCeEEEEEccC--CCEEEEEeCCCeEEEEcCCCCcce-eeeccCCCCCeEEEEEcCCCCcEEEEEe----CCCeEEEEeC
Q 047260          550 SVVTDVRFRPN--SSQLATASVDKSVRLWDAANPNFC-SQAYTGHSSPIMSLDFHPKKTDLFCFCD----NDNEIQYWSI  622 (784)
Q Consensus       550 ~~It~i~fspd--g~~Latgs~Dg~I~IWdl~~~~~~-~~~~~~h~~~V~sl~~sp~~~~ll~sgs----~dg~I~iwDl  622 (784)
                      ..+.|+++.-+  ..++++|..+|.|.+-.++..... .....++...+++++|++-+...+++|-    .|..+.|||+
T Consensus        57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi  136 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI  136 (783)
T ss_pred             CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence            45667776653  347888999999999988765433 4455678889999999997766777763    4678999999


Q ss_pred             CCCeeE--------EeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCe-EEEEEeCCCCCEEEEEEcC-CCCEEEEE
Q 047260          623 NPFLCT--------HITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDR-QTHSLQGHAELVNYICWDT-NGDYLASV  692 (784)
Q Consensus       623 ~~~~~~--------~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~-~i~~l~~h~~~V~sl~~sp-dg~~Lasg  692 (784)
                      .+....        ........+++|..+.+.+++|.....|.++|++... ....+  ....+..+..+| .+.|+++.
T Consensus       137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs~  214 (783)
T KOG1008|consen  137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCSN  214 (783)
T ss_pred             ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceecc
Confidence            864211        1122455678888888888888889999999998431 11111  234566778888 88899999


Q ss_pred             eCCeEEEEe-CCCC-ceEEEeccCC----CceEEEEEecCCCE-EEEEECC-CeEEEEECCC
Q 047260          693 SQNLVKVWS-MASG-ECIQELSSNG----NQFHSCVFHPSYST-LLVVGGI-SSLELWNMAE  746 (784)
Q Consensus       693 sdd~I~IwD-l~t~-~~i~~l~~~~----~~I~sl~fspdg~~-L~s~s~d-g~I~Iwdl~~  746 (784)
                      .++.|.+|| .++- .++..+....    ..+..++|+|...- +++...| ++|+++|+..
T Consensus       215 ~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  215 SDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             ccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence            999999999 3332 2233332222    24889999997643 5555555 6899998753

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=97.76  E-value=0.05  Score=64.84  Aligned_cols=307  Identities=12%  Similarity=0.040  Sum_probs=174.1

Q ss_pred             CCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCCCEEEEEeCCC
Q 047260          450 IDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDR  529 (784)
Q Consensus       450 ~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg  529 (784)
                      ..+++++|.|+..+.+.....+...-..                     +......-...|.-..|-.|..+|.++..||
T Consensus       547 ~s~~~aVG~Ws~~~~~l~~~pd~~~~~~---------------------~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG  605 (1096)
T KOG1897|consen  547 KSRLLAVGLWSDISMILTFLPDLILITH---------------------EQLSGEIIPRSILLTTFEGDIHYLLVALGDG  605 (1096)
T ss_pred             cceEEEEEeecceEEEEEECCCcceeee---------------------eccCCCccchheeeEEeeccceEEEEEcCCc
Confidence            3448899999998887766544311110                     0000111223466666666788999999999


Q ss_pred             eEEEEEC--CCCceeeec--CCCCCCeEEEEEccCCCEEEEEeCCC----------------------------------
Q 047260          530 KVVLWNM--DTLQTESTP--EDHKSVVTDVRFRPNSSQLATASVDK----------------------------------  571 (784)
Q Consensus       530 ~I~IWd~--~t~~~~~~l--~~h~~~It~i~fspdg~~Latgs~Dg----------------------------------  571 (784)
                      .+.-|.+  .++..-..-  .-...++.--.|+..++.-+.+..|+                                  
T Consensus       606 ~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d  685 (1096)
T KOG1897|consen  606 ALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPD  685 (1096)
T ss_pred             eEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhhcccccccCCc
Confidence            9876654  343221111  11223333334433322222222222                                  


Q ss_pred             --------eEEEEcCCCCc-ceeeeccCCCCCeEEEEEcCCCCcEEEEEeCC--------------CeEEEEeCCCCeeE
Q 047260          572 --------SVRLWDAANPN-FCSQAYTGHSSPIMSLDFHPKKTDLFCFCDND--------------NEIQYWSINPFLCT  628 (784)
Q Consensus       572 --------~I~IWdl~~~~-~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~d--------------g~I~iwDl~~~~~~  628 (784)
                              .+++.-++.-. ...++ ..-......+++.+... ++.+.+..              ..++++|-++.+.+
T Consensus       686 ~l~~~~~~~l~i~tid~iqkl~irt-vpl~~~prrI~~q~~sl-~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl  763 (1096)
T KOG1897|consen  686 SLASANGGALTIGTIDEIQKLHIRT-VPLGESPRRICYQESSL-TFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVL  763 (1096)
T ss_pred             eEEEecCCceEEEEecchhhcceee-ecCCCChhheEecccce-EEEEEecccccchhhcCCcceEEEEEEecCCceeEE
Confidence                    23333222211 01111 12234456677776433 33333211              25788888888887


Q ss_pred             EeecC-------CeeEEEEecC-CCEEEEEEC----------CCcEEEEECCCCeEEEEEeC--CCCCEEEEEEcCCCCE
Q 047260          629 HITKG-------GTAQVRFQPR-IGQLLAAAS----------DKVVSIFDIETDRQTHSLQG--HAELVNYICWDTNGDY  688 (784)
Q Consensus       629 ~~~~~-------~v~~v~fsp~-~~~Ll~~s~----------Dg~I~IwDl~t~~~i~~l~~--h~~~V~sl~~spdg~~  688 (784)
                      ..++-       .+.++.|..+ +.++++|+.          .|.|.+|.......+.....  -.+.+.+++. -+|++
T Consensus       764 ~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~-fngkl  842 (1096)
T KOG1897|consen  764 SSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE-FNGKL  842 (1096)
T ss_pred             eeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh-hCCeE
Confidence            77662       2344457777 566777653          47788888877433333322  2334444432 25666


Q ss_pred             EEEEeCCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEE--ECCCCceEE--ecccCCceEEEEE
Q 047260          689 LASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELW--NMAENKSMT--IAAHENIISALAQ  764 (784)
Q Consensus       689 Lasgsdd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iw--dl~~~~~~~--~~~h~~~V~slaf  764 (784)
                      ||+ -.-.|++|++.+++.++.-..+...+..+...-.+..|++|.--++|.+.  +-..+....  -..+...++++.+
T Consensus       843 lA~-In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtavei  921 (1096)
T KOG1897|consen  843 LAG-INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEI  921 (1096)
T ss_pred             EEe-cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEE
Confidence            554 34589999999998877777788889999999999999999988876654  444444443  3357778888887


Q ss_pred             eCCCCEEEEEECCCcEEE
Q 047260          765 SPVTGMVASASHDSSVKL  782 (784)
Q Consensus       765 spdg~~LaSgs~DG~V~I  782 (784)
                      -.+..++. +..+|.+.+
T Consensus       922 l~~d~ylg-ae~~gNlf~  938 (1096)
T KOG1897|consen  922 LDDDTYLG-AENSGNLFT  938 (1096)
T ss_pred             ecCceEEe-ecccccEEE
Confidence            76554443 445666554

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.74  E-value=0.052  Score=63.40  Aligned_cols=231  Identities=9%  Similarity=0.062  Sum_probs=131.0

Q ss_pred             CCEEEEEeCCCeEEEEECCCCceeeecCCC--C--CCeEEEEEccCCCEEEEEe------CCCeEEEEcCCCCcceeeec
Q 047260          519 GKLLASSGHDRKVVLWNMDTLQTESTPEDH--K--SVVTDVRFRPNSSQLATAS------VDKSVRLWDAANPNFCSQAY  588 (784)
Q Consensus       519 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h--~--~~It~i~fspdg~~Latgs------~Dg~I~IWdl~~~~~~~~~~  588 (784)
                      +..++.++.|+.|...|.++++.+......  .  ..+++--..-++ .|+++.      .+|.|..+|.++++..-...
T Consensus       120 ~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~  198 (527)
T TIGR03075       120 DGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRY  198 (527)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence            345677888999999999999998776421  1  112211111144 455543      26889999998877432211


Q ss_pred             cCCC------------------------------CCeE-EEEEcCCCCcEEEEEeC----CC-----------eEEEEeC
Q 047260          589 TGHS------------------------------SPIM-SLDFHPKKTDLFCFCDN----DN-----------EIQYWSI  622 (784)
Q Consensus       589 ~~h~------------------------------~~V~-sl~~sp~~~~ll~sgs~----dg-----------~I~iwDl  622 (784)
                      ....                              ..+. .+.+.++...+++..++    ++           .|.-.|+
T Consensus       199 ~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~  278 (527)
T TIGR03075       199 TVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDP  278 (527)
T ss_pred             CcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcc
Confidence            1100                              0111 23555554433333222    12           5667788


Q ss_pred             CCCeeEEeecC------------CeeEEEEecCCC---EEEEEECCCcEEEEECCCCeEEEEEe-----------C-CC-
Q 047260          623 NPFLCTHITKG------------GTAQVRFQPRIG---QLLAAASDKVVSIFDIETDRQTHSLQ-----------G-HA-  674 (784)
Q Consensus       623 ~~~~~~~~~~~------------~v~~v~fsp~~~---~Ll~~s~Dg~I~IwDl~t~~~i~~l~-----------~-h~-  674 (784)
                      ++++..-.+..            ...-+.+..+++   .++.+..+|.++++|.++++.+...+           . .. 
T Consensus       279 ~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g  358 (527)
T TIGR03075       279 DTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTG  358 (527)
T ss_pred             ccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCC
Confidence            88777655431            111122334555   56677889999999999998863210           0 00 


Q ss_pred             CC-----------------E-----------EEEEEcCCCCEEEEEe---------------------------------
Q 047260          675 EL-----------------V-----------NYICWDTNGDYLASVS---------------------------------  693 (784)
Q Consensus       675 ~~-----------------V-----------~sl~~spdg~~Lasgs---------------------------------  693 (784)
                      .+                 +           ..++++|+..+++...                                 
T Consensus       359 ~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~  438 (527)
T TIGR03075       359 RPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDD  438 (527)
T ss_pred             CCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCC
Confidence            00                 0           1144555544443321                                 


Q ss_pred             -CCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceEE
Q 047260          694 -QNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMT  751 (784)
Q Consensus       694 -dd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~  751 (784)
                       .+.|.-+|+.+++.+............. +.-.+..+++++.+|.++.+|.++++.+-
T Consensus       439 ~~g~l~AiD~~tGk~~W~~~~~~p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw  496 (527)
T TIGR03075       439 HMGSLIAWDPITGKIVWEHKEDFPLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELW  496 (527)
T ss_pred             CceeEEEEeCCCCceeeEecCCCCCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeE
Confidence             1257788888888877765432222222 22244567777889999999999999883

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.74  E-value=0.011  Score=61.91  Aligned_cols=194  Identities=14%  Similarity=0.189  Sum_probs=110.0

Q ss_pred             eccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec----CCeeEEEEecCCCEEEEEECCCcEEEEECC
Q 047260          587 AYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK----GGTAQVRFQPRIGQLLAAASDKVVSIFDIE  662 (784)
Q Consensus       587 ~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~----~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~  662 (784)
                      .+.+-...+..|+|+|+...++++.+..+.|..++.+ ++.+..+.    +....|++..++.++++.-.++.+.++++.
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~   94 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID   94 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence            3445556799999999988899999999999999986 45554443    456778887666555544448999999884


Q ss_pred             CC------eEEEEEe-----CCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCC---CceEEEe--------ccCCCceE
Q 047260          663 TD------RQTHSLQ-----GHAELVNYICWDTNGDYLASVSQN-LVKVWSMAS---GECIQEL--------SSNGNQFH  719 (784)
Q Consensus       663 t~------~~i~~l~-----~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t---~~~i~~l--------~~~~~~I~  719 (784)
                      ..      .....+.     .++..+-.++|++.+..|+++.+. -..||.+..   ...+...        ......+.
T Consensus        95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S  174 (248)
T PF06977_consen   95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS  174 (248)
T ss_dssp             ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred             ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence            32      1112222     244568999999987766666654 455555443   2111111        12334578


Q ss_pred             EEEEecCCCEEEEEEC-CCeEEEEECCCCceE---Eecc--c-----CCceEEEEEeCCCCEEEEEECCCcEEEe
Q 047260          720 SCVFHPSYSTLLVVGG-ISSLELWNMAENKSM---TIAA--H-----ENIISALAQSPVTGMVASASHDSSVKLW  783 (784)
Q Consensus       720 sl~fspdg~~L~s~s~-dg~I~Iwdl~~~~~~---~~~~--h-----~~~V~slafspdg~~LaSgs~DG~V~IW  783 (784)
                      .+.++|....|++-+. +..|.++| .+++.+   .+..  |     -.....|+|.++|++.++ +.-+..++|
T Consensus       175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f  247 (248)
T PF06977_consen  175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF  247 (248)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred             ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence            8999998766666555 46888899 455544   2222  1     124789999999865554 455666555

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.71  E-value=0.0049  Score=68.99  Aligned_cols=204  Identities=14%  Similarity=0.138  Sum_probs=117.6

Q ss_pred             ceeEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeee--cCC------CCCCeEEEEEcc-----CC-
Q 047260          496 TFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTEST--PED------HKSVVTDVRFRP-----NS-  561 (784)
Q Consensus       496 ~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~--l~~------h~~~It~i~fsp-----dg-  561 (784)
                      .|.....++...++|++++.|. =-++|.|..+|.+.|.|++....+..  +..      ....|+++.|.-     |+ 
T Consensus        75 gf~P~~l~~~~~g~vtal~~S~-iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y  153 (395)
T PF08596_consen   75 GFLPLTLLDAKQGPVTALKNSD-IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY  153 (395)
T ss_dssp             EEEEEEEE---S-SEEEEEE-B-TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred             ccCchhheeccCCcEeEEecCC-CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence            3677777888899999999984 44999999999999999987665544  122      345788999974     32 


Q ss_pred             --CEEEEEeCCCeEEEEcCCC---Ccc---eeeeccCCCCCeEEEEEc-CCC--------------------CcEEEEEe
Q 047260          562 --SQLATASVDKSVRLWDAAN---PNF---CSQAYTGHSSPIMSLDFH-PKK--------------------TDLFCFCD  612 (784)
Q Consensus       562 --~~Latgs~Dg~I~IWdl~~---~~~---~~~~~~~h~~~V~sl~~s-p~~--------------------~~ll~sgs  612 (784)
                        -+|++|...|.+.+|.+.-   +..   .......+.++|..|..- .+.                    +.++++++
T Consensus       154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS  233 (395)
T PF08596_consen  154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS  233 (395)
T ss_dssp             EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred             cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence              4688999999999998752   111   111222456677666532 221                    22444444


Q ss_pred             CCCeEEEEeCCCCeeEEeec-CCee--EEEEe-----cCCCEEEEEECCCcEEEEECCCCeEEEEEeCCC----CCEEEE
Q 047260          613 NDNEIQYWSINPFLCTHITK-GGTA--QVRFQ-----PRIGQLLAAASDKVVSIFDIETDRQTHSLQGHA----ELVNYI  680 (784)
Q Consensus       613 ~dg~I~iwDl~~~~~~~~~~-~~v~--~v~fs-----p~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~----~~V~sl  680 (784)
                       +..++++..-+.+..+... .+..  .+.+-     ..+..|++-..+|.|++|.+..-+.+..+.-..    ..+...
T Consensus       234 -e~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~s  312 (395)
T PF08596_consen  234 -ESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSS  312 (395)
T ss_dssp             -SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-
T ss_pred             -ccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCcccccccccc
Confidence             7889999988766655443 3222  23342     245567777889999999999988888776432    234456


Q ss_pred             EEcCCCCEEEEEeCCeEEEEe
Q 047260          681 CWDTNGDYLASVSQNLVKVWS  701 (784)
Q Consensus       681 ~~spdg~~Lasgsdd~I~IwD  701 (784)
                      +++++|.+++-.+...+.++.
T Consensus       313 sis~~Gdi~~~~gpsE~~l~s  333 (395)
T PF08596_consen  313 SISRNGDIFYWTGPSEIQLFS  333 (395)
T ss_dssp             EE-TTS-EEEE-SSSEEEEEE
T ss_pred             EECCCCCEEEEeCcccEEEEE
Confidence            778999988887766444443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.69  E-value=0.0051  Score=70.51  Aligned_cols=138  Identities=18%  Similarity=0.203  Sum_probs=92.0

Q ss_pred             cCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCCCEEEEEeC
Q 047260          448 EDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGH  527 (784)
Q Consensus       448 ~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~  527 (784)
                      +..+.++..|+.-|.+.+|..+.+.              +.+...           .+-.+.+..+..+++..++|.|+.
T Consensus        42 dst~~~l~~GsS~G~lyl~~R~~~~--------------~~~~~~-----------~~~~~~~~~~~vs~~e~lvAagt~   96 (726)
T KOG3621|consen   42 DATEEYLAMGSSAGSVYLYNRHTGE--------------MRKLKN-----------EGATGITCVRSVSSVEYLVAAGTA   96 (726)
T ss_pred             ecCCceEEEecccceEEEEecCchh--------------hhcccc-----------cCccceEEEEEecchhHhhhhhcC
Confidence            3455667788888888888665443              111111           113445667778888889999999


Q ss_pred             CCeEEEEECCCCcee-----eec-CCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCc---ceeeeccCCCCCeEEE
Q 047260          528 DRKVVLWNMDTLQTE-----STP-EDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPN---FCSQAYTGHSSPIMSL  598 (784)
Q Consensus       528 Dg~I~IWd~~t~~~~-----~~l-~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~---~~~~~~~~h~~~V~sl  598 (784)
                      .|.|.|+-+......     ..+ ..|...|+|++|++++..|++|...|.|.+-.++...   .....+....+.|..|
T Consensus        97 ~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQl  176 (726)
T KOG3621|consen   97 SGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQL  176 (726)
T ss_pred             CceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEe
Confidence            999999988653211     111 2478899999999999999999999999998887621   1122333456778777


Q ss_pred             EEcCCCCcEEEEEe
Q 047260          599 DFHPKKTDLFCFCD  612 (784)
Q Consensus       599 ~~sp~~~~ll~sgs  612 (784)
                      ++..  .+++++..
T Consensus       177 D~~q--~~LLVStl  188 (726)
T KOG3621|consen  177 DYLQ--SYLLVSTL  188 (726)
T ss_pred             eccc--ceehHhhh
Confidence            7653  23444443

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.56  E-value=0.0061  Score=66.60  Aligned_cols=164  Identities=12%  Similarity=0.118  Sum_probs=101.4

Q ss_pred             eEEEEeCCCCeeEEeec----CCeeEEE---EecC----CCEEEEEEC---------C-CcEEEEECCCC----eEEEEE
Q 047260          616 EIQYWSINPFLCTHITK----GGTAQVR---FQPR----IGQLLAAAS---------D-KVVSIFDIETD----RQTHSL  670 (784)
Q Consensus       616 ~I~iwDl~~~~~~~~~~----~~v~~v~---fsp~----~~~Ll~~s~---------D-g~I~IwDl~t~----~~i~~l  670 (784)
                      .|++.|..+...+..+.    ..+.+++   +..+    ..++++|+.         . |.|.+|++...    ..+..+
T Consensus         3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i   82 (321)
T PF03178_consen    3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI   82 (321)
T ss_dssp             EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred             EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence            46666666655544433    2333333   3322    356666654         2 88999999884    122221


Q ss_pred             --eCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCc-eEEEecc-CCCceEEEEEecCCCEEEEEECCCeEEEEECCC
Q 047260          671 --QGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGE-CIQELSS-NGNQFHSCVFHPSYSTLLVVGGISSLELWNMAE  746 (784)
Q Consensus       671 --~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~-~i~~l~~-~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~  746 (784)
                        ....++|++++--  +.+|+++..+.|.+|++...+ .+..-.. ....+.++...  +++|++|.....|.++.++.
T Consensus        83 ~~~~~~g~V~ai~~~--~~~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~  158 (321)
T PF03178_consen   83 HSTEVKGPVTAICSF--NGRLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDE  158 (321)
T ss_dssp             EEEEESS-EEEEEEE--TTEEEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEET
T ss_pred             EEEeecCcceEhhhh--CCEEEEeecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEc
Confidence              2357889998866  444777778899999998877 4332222 22345555554  55999999888888775543


Q ss_pred             --CceEEe--cccCCceEEEEEeCCCCEEEEEECCCcEEEe
Q 047260          747 --NKSMTI--AAHENIISALAQSPVTGMVASASHDSSVKLW  783 (784)
Q Consensus       747 --~~~~~~--~~h~~~V~slafspdg~~LaSgs~DG~V~IW  783 (784)
                        .+...+  ......++++.|-++++.++.+..+|.|.++
T Consensus       159 ~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l  199 (321)
T PF03178_consen  159 ENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVL  199 (321)
T ss_dssp             TTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEE
T ss_pred             cCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEE
Confidence              223222  2345568899998666799999999999886

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PRK10115 protease 2; Provisional

Probab=97.54  E-value=0.1  Score=63.09  Aligned_cols=237  Identities=8%  Similarity=0.025  Sum_probs=125.0

Q ss_pred             ceEEEEEcCCCCEEEEEeC-----CCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCC------CeEEEEc
Q 047260          509 KVTCCHFSSDGKLLASSGH-----DRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVD------KSVRLWD  577 (784)
Q Consensus       509 ~V~~l~fspdg~~Lasgs~-----Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~D------g~I~IWd  577 (784)
                      .+..+.|+|||++|+.+..     ...|++.|+.++..+........  ..++|.+|++.|+.+..+      ..|..++
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~  205 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT  205 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence            3677889999998887533     23589999988864333222222  469999998877665442      3677888


Q ss_pred             CCCCc-ceeeeccCCCCCeE-EEEEcCCCCcEEEEEeC--CCeEEEEeCC--CC--eeEEeecCCeeEEEEecCCCEEEE
Q 047260          578 AANPN-FCSQAYTGHSSPIM-SLDFHPKKTDLFCFCDN--DNEIQYWSIN--PF--LCTHITKGGTAQVRFQPRIGQLLA  649 (784)
Q Consensus       578 l~~~~-~~~~~~~~h~~~V~-sl~~sp~~~~ll~sgs~--dg~I~iwDl~--~~--~~~~~~~~~v~~v~fsp~~~~Ll~  649 (784)
                      +.++. .....+........ .+..+.++..+++.+..  ++.+.+++..  ..  .++......+.. .+...+..++.
T Consensus       206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ly~  284 (686)
T PRK10115        206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEY-SLDHYQHRFYL  284 (686)
T ss_pred             CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEE-EEEeCCCEEEE
Confidence            88762 12233333333333 33334467766655443  4678888853  22  222222222221 22223345554


Q ss_pred             EECC----CcEEEEECCCCeEEEEEeCC-C-CCEEEEEEcCCCCEEEEEe-CC--eEEEEeCCCCceEEEec-cCCCceE
Q 047260          650 AASD----KVVSIFDIETDRQTHSLQGH-A-ELVNYICWDTNGDYLASVS-QN--LVKVWSMASGECIQELS-SNGNQFH  719 (784)
Q Consensus       650 ~s~D----g~I~IwDl~t~~~i~~l~~h-~-~~V~sl~~spdg~~Lasgs-dd--~I~IwDl~t~~~i~~l~-~~~~~I~  719 (784)
                      .+..    ..|...++........+..+ . ..|..+.+.. +.++++.. ++  .|.++|...+ .+..+. .....+.
T Consensus       285 ~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~-~~l~~~~~~~g~~~l~~~~~~~~-~~~~l~~~~~~~~~  362 (686)
T PRK10115        285 RSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFT-DWLVVEERQRGLTSLRQINRKTR-EVIGIAFDDPAYVT  362 (686)
T ss_pred             EEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEEC-CEEEEEEEeCCEEEEEEEcCCCC-ceEEecCCCCceEe
Confidence            4432    23444455422222333334 3 3678888873 34444444 34  6677776543 344443 2222233


Q ss_pred             EEEEe--cCCC-EEEEEECC---CeEEEEECCCCceE
Q 047260          720 SCVFH--PSYS-TLLVVGGI---SSLELWNMAENKSM  750 (784)
Q Consensus       720 sl~fs--pdg~-~L~s~s~d---g~I~Iwdl~~~~~~  750 (784)
                      .+.++  +++. .+++.++.   +.+..+|+.+++..
T Consensus       363 ~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~~  399 (686)
T PRK10115        363 WIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGERR  399 (686)
T ss_pred             eecccCCCCCceEEEEEecCCCCCEEEEEECCCCcEE
Confidence            33344  3433 44444433   57899998876543

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.52  E-value=0.026  Score=63.79  Aligned_cols=187  Identities=6%  Similarity=0.044  Sum_probs=96.5

Q ss_pred             eEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec-----CCeeEE-----EEe
Q 047260          572 SVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK-----GGTAQV-----RFQ  641 (784)
Q Consensus       572 ~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~-----~~v~~v-----~fs  641 (784)
                      .|+||+..... .....-.+ +.|.++.|..+.. ++ +-..||.+++||+.... .....     ..+...     .+.
T Consensus        62 ~I~iys~sG~l-l~~i~w~~-~~iv~~~wt~~e~-Lv-vV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~  136 (410)
T PF04841_consen   62 SIQIYSSSGKL-LSSIPWDS-GRIVGMGWTDDEE-LV-VVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFY  136 (410)
T ss_pred             EEEEECCCCCE-eEEEEECC-CCEEEEEECCCCe-EE-EEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccC
Confidence            47777766433 22222222 7899999987654 44 45579999999996433 11111     122111     122


Q ss_pred             cCCCEEEEEECCCcEEEEECCCCe-EEEEEeCCCC---------CEEE-EEEcCCCCEEEEEeCC-eEEEEeCCCCceEE
Q 047260          642 PRIGQLLAAASDKVVSIFDIETDR-QTHSLQGHAE---------LVNY-ICWDTNGDYLASVSQN-LVKVWSMASGECIQ  709 (784)
Q Consensus       642 p~~~~Ll~~s~Dg~I~IwDl~t~~-~i~~l~~h~~---------~V~s-l~~spdg~~Lasgsdd-~I~IwDl~t~~~i~  709 (784)
                      .. + +++-..++.|.+..--... ..+.+..-..         .+.. ..++.+....+....+ .+.+.+-...+.  
T Consensus       137 ~~-G-ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~--  212 (410)
T PF04841_consen  137 KN-G-IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ--  212 (410)
T ss_pred             CC-C-EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc--
Confidence            22 2 3333445555544332211 1111110000         0000 2233344443333333 555343322111  


Q ss_pred             EeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceEEec--ccCCceEEEEEeCCCC
Q 047260          710 ELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIA--AHENIISALAQSPVTG  769 (784)
Q Consensus       710 ~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~~--~h~~~V~slafspdg~  769 (784)
                       +. ..+++..+++||++++|+.-..+|.+.+.+.+-.+.+...  .-......+.|+-++-
T Consensus       213 -i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~da  272 (410)
T PF04841_consen  213 -ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDA  272 (410)
T ss_pred             -cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCc
Confidence             21 2368999999999999999999999999876655554222  2235667777776543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.52  E-value=0.00037  Score=78.63  Aligned_cols=96  Identities=16%  Similarity=0.141  Sum_probs=81.9

Q ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeE-EEEEccCCCEEEEEeCCCeEEEEcCCCCcce
Q 047260          506 RNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVT-DVRFRPNSSQLATASVDKSVRLWDAANPNFC  584 (784)
Q Consensus       506 H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It-~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~  584 (784)
                      -.-.|.-+.|+|.-.+||++..+|.|.+..+. ...+.++.-|...++ +++|.|||+.||+|-.||+|++.|++++...
T Consensus        19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l   97 (665)
T KOG4640|consen   19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL   97 (665)
T ss_pred             cccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence            34458889999999999999999999999998 788888887888887 9999999999999999999999999998755


Q ss_pred             eeeccCCCCCeEEEEEcC
Q 047260          585 SQAYTGHSSPIMSLDFHP  602 (784)
Q Consensus       585 ~~~~~~h~~~V~sl~~sp  602 (784)
                      ..........|.++.|.+
T Consensus        98 ~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   98 VSFLFSVETDISKGIWDR  115 (665)
T ss_pred             eccccccccchheeeccc
Confidence            554444566788888864

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.52  E-value=0.013  Score=63.94  Aligned_cols=205  Identities=12%  Similarity=0.136  Sum_probs=113.8

Q ss_pred             eEEEEcCCCCcceeeeccCCCCCeEEEE---EcCC---CCcEEEEEeC---------C-CeEEEEeCCCC-----eeE--
Q 047260          572 SVRLWDAANPNFCSQAYTGHSSPIMSLD---FHPK---KTDLFCFCDN---------D-NEIQYWSINPF-----LCT--  628 (784)
Q Consensus       572 ~I~IWdl~~~~~~~~~~~~h~~~V~sl~---~sp~---~~~ll~sgs~---------d-g~I~iwDl~~~-----~~~--  628 (784)
                      .|++.|..+..............+.+++   +..+   ...++++|..         . |.|.++++...     +..  
T Consensus         3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i   82 (321)
T PF03178_consen    3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI   82 (321)
T ss_dssp             EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred             EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence            5677777665532222112233444443   3322   1445555542         2 89999999873     222  


Q ss_pred             --EeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCe-EEEEEe-CCCCCEEEEEEcCCCCEEEEEe-CCeEEE--Ee
Q 047260          629 --HITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDR-QTHSLQ-GHAELVNYICWDTNGDYLASVS-QNLVKV--WS  701 (784)
Q Consensus       629 --~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~-~i~~l~-~h~~~V~sl~~spdg~~Lasgs-dd~I~I--wD  701 (784)
                        ...++++++++-.  +++| +++.++.|.+|++...+ ....-. .....+.++...  +.+|++|. .+.|.+  |+
T Consensus        83 ~~~~~~g~V~ai~~~--~~~l-v~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~  157 (321)
T PF03178_consen   83 HSTEVKGPVTAICSF--NGRL-VVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYD  157 (321)
T ss_dssp             EEEEESS-EEEEEEE--TTEE-EEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEE
T ss_pred             EEEeecCcceEhhhh--CCEE-EEeecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEE
Confidence              2334778887755  4554 44445899999998877 433322 233366666655  55777776 334554  45


Q ss_pred             CCCCceEEEec--cCCCceEEEEEecCCCEEEEEECCCeEEEEECCC-------Cc-eE---EecccCCceEEE---EEe
Q 047260          702 MASGECIQELS--SNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAE-------NK-SM---TIAAHENIISAL---AQS  765 (784)
Q Consensus       702 l~t~~~i~~l~--~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~-------~~-~~---~~~~h~~~V~sl---afs  765 (784)
                      .... .+..+.  .....+.++.|-+++..++++..+|.|.++....       +. .+   ........|+++   ++.
T Consensus       158 ~~~~-~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~  236 (321)
T PF03178_consen  158 EENN-KLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLI  236 (321)
T ss_dssp             TTTE--EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS
T ss_pred             ccCC-EEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEee
Confidence            4332 222332  2345688888886667899999999999997763       22 22   223345667777   444


Q ss_pred             CC--CC------EEEEEECCCcEEE
Q 047260          766 PV--TG------MVASASHDSSVKL  782 (784)
Q Consensus       766 pd--g~------~LaSgs~DG~V~I  782 (784)
                      |.  +.      .++.++.+|.|.+
T Consensus       237 ~~~~~~~~~~~~~i~~~T~~G~Ig~  261 (321)
T PF03178_consen  237 PRSGSSESPNRPQILYGTVDGSIGV  261 (321)
T ss_dssp             --SSSS-TTEEEEEEEEETTS-EEE
T ss_pred             ecCCCCcccccceEEEEecCCEEEE
Confidence            51  22      4788889998863

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.48  E-value=0.024  Score=58.90  Aligned_cols=247  Identities=13%  Similarity=0.105  Sum_probs=145.6

Q ss_pred             eEEEEEcCCCC-EEEEEeCCCe-EEEEECCCCceeeecCCCCCC--eEEEEEccCCCEEEEEeCC-----CeEEEEcCCC
Q 047260          510 VTCCHFSSDGK-LLASSGHDRK-VVLWNMDTLQTESTPEDHKSV--VTDVRFRPNSSQLATASVD-----KSVRLWDAAN  580 (784)
Q Consensus       510 V~~l~fspdg~-~Lasgs~Dg~-I~IWd~~t~~~~~~l~~h~~~--It~i~fspdg~~Latgs~D-----g~I~IWdl~~  580 (784)
                      -..++|+|... -++.+-.-|+ ..++|........++...++.  --.=.|++||.+|+..-.|     |.|-|||.+.
T Consensus        70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~  149 (366)
T COG3490          70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE  149 (366)
T ss_pred             cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc
Confidence            34567777443 4555655554 567888776655444221111  1123689999999886443     7899999987


Q ss_pred             CcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEE-eCCCCeeEEeecCCeeEEEEecCCCEEEEEECCCcEEEE
Q 047260          581 PNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYW-SINPFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIF  659 (784)
Q Consensus       581 ~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iw-Dl~~~~~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~Iw  659 (784)
                      +-..+-.+..|.-....+.|.+||+.+++.   +|-|..- |...                    ..|=.-+..-.+.+.
T Consensus       150 ~fqrvgE~~t~GiGpHev~lm~DGrtlvva---nGGIethpdfgR--------------------~~lNldsMePSlvll  206 (366)
T COG3490         150 GFQRVGEFSTHGIGPHEVTLMADGRTLVVA---NGGIETHPDFGR--------------------TELNLDSMEPSLVLL  206 (366)
T ss_pred             ccceecccccCCcCcceeEEecCCcEEEEe---CCceecccccCc--------------------cccchhhcCccEEEE
Confidence            655566677777777889999999865554   3333332 1110                    011122233455566


Q ss_pred             ECCCCeEEEEE--e--CCCCCEEEEEEcCCCCEEEEEe-----CC-eEEEEeCCCCceEEEeccC-------CCceEEEE
Q 047260          660 DIETDRQTHSL--Q--GHAELVNYICWDTNGDYLASVS-----QN-LVKVWSMASGECIQELSSN-------GNQFHSCV  722 (784)
Q Consensus       660 Dl~t~~~i~~l--~--~h~~~V~sl~~spdg~~Lasgs-----dd-~I~IwDl~t~~~i~~l~~~-------~~~I~sl~  722 (784)
                      |..++..+.+.  .  .+.-.|..++..+||..++.+-     ++ --.|=-...++.+.-+...       ...|-+++
T Consensus       207 d~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA  286 (366)
T COG3490         207 DAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIA  286 (366)
T ss_pred             eccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhhee
Confidence            66666555432  2  2456788999999999888764     22 1222223345555444322       34577888


Q ss_pred             EecCCCEEEEEECCC-eEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEECCCcEEE
Q 047260          723 FHPSYSTLLVVGGIS-SLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKL  782 (784)
Q Consensus       723 fspdg~~L~s~s~dg-~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs~DG~V~I  782 (784)
                      .+.+..+++..+-.| ...+||..++..+....-.+ +..++-  ...-++..+.+|.+.+
T Consensus       287 ~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~d-aaGva~--~~~gf~vssg~G~~~~  344 (366)
T COG3490         287 ANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALPD-AAGVAA--AKGGFAVSSGQGRIIF  344 (366)
T ss_pred             ecccCCeEEEecCCCCeEEEEEcCCCcEEecccccc-ccccee--ccCceEEecCCceEEe
Confidence            887777777777665 78899999998874433221 122222  2233555556666654

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.48  E-value=0.032  Score=60.38  Aligned_cols=214  Identities=8%  Similarity=0.022  Sum_probs=125.6

Q ss_pred             EEEccCCCE-EEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEee--
Q 047260          555 VRFRPNSSQ-LATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHIT--  631 (784)
Q Consensus       555 i~fspdg~~-Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~--  631 (784)
                      ..|.++... +.+--..+.|.-|+..+++.....   +.+.+.++.....+. .|+++.  ..+.+++.+....+..+  
T Consensus        30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~---~p~~~~~~~~~d~~g-~Lv~~~--~g~~~~~~~~~~~~t~~~~  103 (307)
T COG3386          30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRVFP---SPGGFSSGALIDAGG-RLIACE--HGVRLLDPDTGGKITLLAE  103 (307)
T ss_pred             ccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEE---CCCCcccceeecCCC-eEEEEc--cccEEEeccCCceeEEecc
Confidence            356666553 444455778888988765532222   223345554444444 455553  34555555543332221  


Q ss_pred             -c-----CCeeEEEEecCCCEEEEEEC-----------CCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeC
Q 047260          632 -K-----GGTAQVRFQPRIGQLLAAAS-----------DKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQ  694 (784)
Q Consensus       632 -~-----~~v~~v~fsp~~~~Ll~~s~-----------Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsd  694 (784)
                       .     ...+.+.+.|+|...+....           -|.|+.+|. .+..++.+..+-..-+.|+||||++.|+.+..
T Consensus       104 ~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT  182 (307)
T COG3386         104 PEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADT  182 (307)
T ss_pred             ccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeC
Confidence             1     34467788888776554333           133555554 45666666666666788999999998887764


Q ss_pred             --CeEEEEeCCC--C----ce-EEEeccCCCceEEEEEecCCCEEEEEECCC-eEEEEECCCCceE-EecccCCceEEEE
Q 047260          695 --NLVKVWSMAS--G----EC-IQELSSNGNQFHSCVFHPSYSTLLVVGGIS-SLELWNMAENKSM-TIAAHENIISALA  763 (784)
Q Consensus       695 --d~I~IwDl~t--~----~~-i~~l~~~~~~I~sl~fspdg~~L~s~s~dg-~I~Iwdl~~~~~~-~~~~h~~~V~sla  763 (784)
                        +.|.-|++..  +    +. ...+....+..-.++...+|.+.+++...| .|.+|+.. ++.+ .+.-....+++++
T Consensus       183 ~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~  261 (307)
T COG3386         183 PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPA  261 (307)
T ss_pred             CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccce
Confidence              4777777652  1    11 122223345566778888888765554444 89999999 6666 4444447788888


Q ss_pred             EeC-CCCE-EEEEEC
Q 047260          764 QSP-VTGM-VASASH  776 (784)
Q Consensus       764 fsp-dg~~-LaSgs~  776 (784)
                      |-- +.+. ++|+..
T Consensus       262 FgG~~~~~L~iTs~~  276 (307)
T COG3386         262 FGGPDLNTLYITSAR  276 (307)
T ss_pred             EeCCCcCEEEEEecC
Confidence            874 4444 444433

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.47  E-value=0.038  Score=62.54  Aligned_cols=216  Identities=11%  Similarity=0.109  Sum_probs=123.1

Q ss_pred             CeEEEEEccCCCEEEEE-eCCC----eEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCC----------C
Q 047260          551 VVTDVRFRPNSSQLATA-SVDK----SVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDND----------N  615 (784)
Q Consensus       551 ~It~i~fspdg~~Latg-s~Dg----~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~d----------g  615 (784)
                      .+..+.++|++++||.+ +..|    .|+|+|+++++.+...+...  ....+.|.+++..++++...+          .
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~  202 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR  202 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence            34468899999998866 3333    59999999987544443321  123499999988787776443          2


Q ss_pred             eEEEEeCCCCe----eEEeec-CC--eeEEEEecCCCEEEEEEC---C-CcEEEEECCCC----eEEEEEeCCCCCE-EE
Q 047260          616 EIQYWSINPFL----CTHITK-GG--TAQVRFQPRIGQLLAAAS---D-KVVSIFDIETD----RQTHSLQGHAELV-NY  679 (784)
Q Consensus       616 ~I~iwDl~~~~----~~~~~~-~~--v~~v~fsp~~~~Ll~~s~---D-g~I~IwDl~t~----~~i~~l~~h~~~V-~s  679 (784)
                      .|+.|.+.+..    .+.... ..  ...+..+++++++++...   + ..|.+.|+..+    .....+......+ ..
T Consensus       203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~  282 (414)
T PF02897_consen  203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYY  282 (414)
T ss_dssp             EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEE
T ss_pred             EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEE
Confidence            47888887542    222222 22  457788999999886554   3 46888898874    2333333334344 33


Q ss_pred             EEEcCCCCEEEEEeCC----eEEEEeCCCCce---EEEeccCCCceEEEEEecCCCEEEEEECC-C--eEEEEECC-CCc
Q 047260          680 ICWDTNGDYLASVSQN----LVKVWSMASGEC---IQELSSNGNQFHSCVFHPSYSTLLVVGGI-S--SLELWNMA-ENK  748 (784)
Q Consensus       680 l~~spdg~~Lasgsdd----~I~IwDl~t~~~---i~~l~~~~~~I~sl~fspdg~~L~s~s~d-g--~I~Iwdl~-~~~  748 (784)
                      +... .+.+++...++    .|...++.+...   ...+..+...+.-..+...+.+|+....+ +  .|+++++. +..
T Consensus       283 v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~  361 (414)
T PF02897_consen  283 VDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKE  361 (414)
T ss_dssp             EEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEE
T ss_pred             EEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcE
Confidence            4333 44455544432    777778877652   33555555543333444445566555544 3  79999999 544


Q ss_pred             eEEecc-cCCceEEEEEeCCCC
Q 047260          749 SMTIAA-HENIISALAQSPVTG  769 (784)
Q Consensus       749 ~~~~~~-h~~~V~slafspdg~  769 (784)
                      ...+.. -.+.|..+...+++.
T Consensus       362 ~~~~~~p~~g~v~~~~~~~~~~  383 (414)
T PF02897_consen  362 SREIPLPEAGSVSGVSGDFDSD  383 (414)
T ss_dssp             EEEEESSSSSEEEEEES-TT-S
T ss_pred             EeeecCCcceEEeccCCCCCCC
Confidence            443332 334455555455544

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=97.41  E-value=0.24  Score=55.71  Aligned_cols=260  Identities=11%  Similarity=0.157  Sum_probs=147.2

Q ss_pred             CCEEEEEeCCCeEEEEECCCCce----eeecCCCCCCeEEEEEcc----CCCEEEEEeCCCeEEEEcCCCCc--------
Q 047260          519 GKLLASSGHDRKVVLWNMDTLQT----ESTPEDHKSVVTDVRFRP----NSSQLATASVDKSVRLWDAANPN--------  582 (784)
Q Consensus       519 g~~Lasgs~Dg~I~IWd~~t~~~----~~~l~~h~~~It~i~fsp----dg~~Latgs~Dg~I~IWdl~~~~--------  582 (784)
                      ...|++|+.+|.++||+......    +..-..-..+|..|..-.    .....++.-.-..+.||.+....        
T Consensus        37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~  116 (418)
T PF14727_consen   37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQ  116 (418)
T ss_pred             ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcE
Confidence            45899999999999999864321    111123457888877643    22233333566788888873211        


Q ss_pred             ceeeeccCCC--CCeEEEEEcC----CCCcEEEEEeCCCeEEEEeCCCCeeEEeecC--CeeEEEEecCCCEEEEEECCC
Q 047260          583 FCSQAYTGHS--SPIMSLDFHP----KKTDLFCFCDNDNEIQYWSINPFLCTHITKG--GTAQVRFQPRIGQLLAAASDK  654 (784)
Q Consensus       583 ~~~~~~~~h~--~~V~sl~~sp----~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~--~v~~v~fsp~~~~Ll~~s~Dg  654 (784)
                      ..+.....|.  .....+++-|    .+..++++-+-||.+.+|+-+.....+.+..  -...+.|.+....+++++.+.
T Consensus       117 ~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss~  196 (418)
T PF14727_consen  117 YQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSSW  196 (418)
T ss_pred             EEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCce
Confidence            1112222222  2233333333    3367899999999999999987665555543  235678899989999999998


Q ss_pred             cEEEEECCC--------------------Ce---EEEEEeCCCCC---EEEEEEcCCCCEEEEEeCCeEEEEeCCCCceE
Q 047260          655 VVSIFDIET--------------------DR---QTHSLQGHAEL---VNYICWDTNGDYLASVSQNLVKVWSMASGECI  708 (784)
Q Consensus       655 ~I~IwDl~t--------------------~~---~i~~l~~h~~~---V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i  708 (784)
                      .|..|....                    ++   +-.++. -...   |..+.++.....+++-++..+.+.+- +|...
T Consensus       197 ~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~n-lGE~~l~i~v~~~~~~~~~IvvLger~Lf~l~~-~G~l~  274 (418)
T PF14727_consen  197 TLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFN-LGEQALDIQVVRFSSSESDIVVLGERSLFCLKD-NGSLR  274 (418)
T ss_pred             eEEEecHHHhhhccccccccccccccccccccccceeEEE-CCceeEEEEEEEcCCCCceEEEEecceEEEEcC-CCeEE
Confidence            998886421                    00   111111 1122   23333433445666667777777775 45444


Q ss_pred             EEeccCCCceEEEEEec----CC---CEEEEEECCCeEEEEECCCCceEEecccCCceEEEE---EeCCCCEEEEEECCC
Q 047260          709 QELSSNGNQFHSCVFHP----SY---STLLVVGGISSLELWNMAENKSMTIAAHENIISALA---QSPVTGMVASASHDS  778 (784)
Q Consensus       709 ~~l~~~~~~I~sl~fsp----dg---~~L~s~s~dg~I~Iwdl~~~~~~~~~~h~~~V~sla---fspdg~~LaSgs~DG  778 (784)
                      ...+-.-.+...+.|..    ++   ..+++++.++.+.||.=.+-.-..  .......+|.   |..-..+|++-+.||
T Consensus       275 ~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA--~l~~~PVal~v~~~~~~~G~IV~Ls~~G  352 (418)
T PF14727_consen  275 FQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSA--QLPHVPVALSVANFNGLKGLIVSLSDEG  352 (418)
T ss_pred             EEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEec--CCCCCCEEEEecccCCCCceEEEEcCCC
Confidence            33333222322232322    22   248889999999998633221111  1111122333   333356888889999


Q ss_pred             cEEE
Q 047260          779 SVKL  782 (784)
Q Consensus       779 ~V~I  782 (784)
                      .|.+
T Consensus       353 ~L~v  356 (418)
T PF14727_consen  353 QLSV  356 (418)
T ss_pred             cEEE
Confidence            8865

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.38  E-value=0.058  Score=58.35  Aligned_cols=217  Identities=13%  Similarity=0.096  Sum_probs=132.4

Q ss_pred             EEcCCCC-EEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeec---c
Q 047260          514 HFSSDGK-LLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAY---T  589 (784)
Q Consensus       514 ~fspdg~-~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~---~  589 (784)
                      .|.++.. ++.+--..+.|.-|+..+++.. .+ .+...+.++.....+..|+++..  .+.+++.+++.......   .
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~-~~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~  106 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGKKR-VF-PSPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPED  106 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCceE-EE-ECCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccC
Confidence            4667666 4455556788999998866442 22 23344555555555556666533  36677765544211111   1


Q ss_pred             C-CCCCeEEEEEcCCCCcEEEEEe-----C-----CCeEEEEeCCCCeeEEeecC---CeeEEEEecCCCEEEEEEC-CC
Q 047260          590 G-HSSPIMSLDFHPKKTDLFCFCD-----N-----DNEIQYWSINPFLCTHITKG---GTAQVRFQPRIGQLLAAAS-DK  654 (784)
Q Consensus       590 ~-h~~~V~sl~~sp~~~~ll~sgs-----~-----dg~I~iwDl~~~~~~~~~~~---~v~~v~fsp~~~~Ll~~s~-Dg  654 (784)
                      + .......+...|+|...+-+..     .     -|.|+.+|. ....+.....   ..+.++|+|+++.++.+.+ .+
T Consensus       107 ~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~  185 (307)
T COG3386         107 GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPAN  185 (307)
T ss_pred             CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCC
Confidence            1 1234567788888874443333     1     133444443 3444444443   3367999999999888887 48


Q ss_pred             cEEEEECCC--C----eE-EEEEeCCCCCEEEEEEcCCCCEEEEEeC-C-eEEEEeCCCCceEEEeccCCCceEEEEEe-
Q 047260          655 VVSIFDIET--D----RQ-THSLQGHAELVNYICWDTNGDYLASVSQ-N-LVKVWSMASGECIQELSSNGNQFHSCVFH-  724 (784)
Q Consensus       655 ~I~IwDl~t--~----~~-i~~l~~h~~~V~sl~~spdg~~Lasgsd-d-~I~IwDl~t~~~i~~l~~~~~~I~sl~fs-  724 (784)
                      .|.-|++..  +    +. ...+....+..-.++.+.+|.+.+++.. + .|.+|+.. ++.+..+..+...+.+++|- 
T Consensus       186 ~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG  264 (307)
T COG3386         186 RIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGG  264 (307)
T ss_pred             eEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeC
Confidence            898888762  1    11 1222234456667888889998865443 3 99999998 99999998887778888885 


Q ss_pred             cCCCEEEEEECC
Q 047260          725 PSYSTLLVVGGI  736 (784)
Q Consensus       725 pdg~~L~s~s~d  736 (784)
                      ++.+.|++.+..
T Consensus       265 ~~~~~L~iTs~~  276 (307)
T COG3386         265 PDLNTLYITSAR  276 (307)
T ss_pred             CCcCEEEEEecC
Confidence            455555555543

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.26  E-value=0.039  Score=65.11  Aligned_cols=184  Identities=10%  Similarity=0.076  Sum_probs=108.9

Q ss_pred             CCCeEEEEEcCCCCcEEEEEe-----CC--CeEEEEeCCCCeeEEeecCCeeEEEEecCCCEEEEEECC-----------
Q 047260          592 SSPIMSLDFHPKKTDLFCFCD-----ND--NEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAASD-----------  653 (784)
Q Consensus       592 ~~~V~sl~~sp~~~~ll~sgs-----~d--g~I~iwDl~~~~~~~~~~~~v~~v~fsp~~~~Ll~~s~D-----------  653 (784)
                      ...+.+.+++|++..++++..     .|  ..|.+++................-.|+|+++.+++....           
T Consensus       349 ~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~  428 (591)
T PRK13616        349 MGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPA  428 (591)
T ss_pred             ccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCCCCCCceECCCCCceEEEecCcceEEEeccCC
Confidence            346788999999998777762     23  356666654322222222346778899998877776532           


Q ss_pred             -CcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEE---EeCCCCce-E---EEecc-CCCceEEEEEe
Q 047260          654 -KVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQNLVKV---WSMASGEC-I---QELSS-NGNQFHSCVFH  724 (784)
Q Consensus       654 -g~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd~I~I---wDl~t~~~-i---~~l~~-~~~~I~sl~fs  724 (784)
                       +.+.+.+++.+....   .....|..+.|+|||..|+...++.|.|   -....|+. +   ..+.. ....+..+.|.
T Consensus       429 ~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~  505 (591)
T PRK13616        429 TGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWR  505 (591)
T ss_pred             CceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecccCCccccceEe
Confidence             233333443332222   2355799999999999998888787766   44445541 1   11222 23346889999


Q ss_pred             cCCCEEEEEECCCe--EEEEECCCCceEEecc--cCCceEEEEEeCCCCEEEEEECCCcEE
Q 047260          725 PSYSTLLVVGGISS--LELWNMAENKSMTIAA--HENIISALAQSPVTGMVASASHDSSVK  781 (784)
Q Consensus       725 pdg~~L~s~s~dg~--I~Iwdl~~~~~~~~~~--h~~~V~slafspdg~~LaSgs~DG~V~  781 (784)
                      .++.. +++..++.  +...++.......+..  ....+.+|+-++.  .|+....+|.+.
T Consensus       506 ~~~~L-~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~  563 (591)
T PRK13616        506 TGDSL-VVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ  563 (591)
T ss_pred             cCCEE-EEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence            99984 45555543  4444455333222222  3566777877763  455556666543

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=97.25  E-value=0.081  Score=60.12  Aligned_cols=116  Identities=11%  Similarity=0.076  Sum_probs=78.8

Q ss_pred             CceEEEEEcCC----CCEEEEEeCCCeEEEEECC-----CCceeeecCC-C--CCC--eEEEEEccCCCEEEEEeCCCeE
Q 047260          508 SKVTCCHFSSD----GKLLASSGHDRKVVLWNMD-----TLQTESTPED-H--KSV--VTDVRFRPNSSQLATASVDKSV  573 (784)
Q Consensus       508 ~~V~~l~fspd----g~~Lasgs~Dg~I~IWd~~-----t~~~~~~l~~-h--~~~--It~i~fspdg~~Latgs~Dg~I  573 (784)
                      ..|..+.|.|-    ...|+..-....|.||.+.     ..+.+..-.. .  .-+  -..+.|+|....|++-.....-
T Consensus        57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS  136 (671)
T PF15390_consen   57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS  136 (671)
T ss_pred             ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence            45889999984    3345556778899999875     2222222111 1  111  2457899998888777666555


Q ss_pred             EEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCC
Q 047260          574 RLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSIN  623 (784)
Q Consensus       574 ~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~  623 (784)
                      .++++......++.-....+.|.|.+|..||..++++.+..-.-++||-.
T Consensus       137 V~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  137 VLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             EeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence            66776654433443335568899999999999999888877788999865

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.18  E-value=0.085  Score=53.46  Aligned_cols=203  Identities=12%  Similarity=0.102  Sum_probs=114.0

Q ss_pred             CCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEc-CCCC-cEEEEEeCCCeEEEEeCCC--CeeEEee-----
Q 047260          561 SSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFH-PKKT-DLFCFCDNDNEIQYWSINP--FLCTHIT-----  631 (784)
Q Consensus       561 g~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~s-p~~~-~ll~sgs~dg~I~iwDl~~--~~~~~~~-----  631 (784)
                      +.++.+--..|.|+-||+.........+.+..  +.++.+- .++. .+.+.++..-.|.-||...  ......+     
T Consensus        27 ~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p~--~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~  104 (310)
T KOG4499|consen   27 QSLLYVDIEAGEVHRYDIEQNKVYRAKIEGPP--SAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQP  104 (310)
T ss_pred             ceEEEEEeccCceehhhhhhhheEEEEEecCc--ceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCc
Confidence            44555555667788899988664444444322  2222221 1222 3445555555666677432  2222221     


Q ss_pred             ---cCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCC--------CCEEEEEEcCCCCEEEEEe-CC-eEE
Q 047260          632 ---KGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHA--------ELVNYICWDTNGDYLASVS-QN-LVK  698 (784)
Q Consensus       632 ---~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~--------~~V~sl~~spdg~~Lasgs-dd-~I~  698 (784)
                         +.....-..+|+|++ +.|.....=.++....+.+..-+.+|.        ..-+.++|+.+.+.+.... -+ .|.
T Consensus       105 d~kknR~NDgkvdP~Gry-y~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~  183 (310)
T KOG4499|consen  105 DRKKNRLNDGKVDPDGRY-YGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVD  183 (310)
T ss_pred             hHHhcccccCccCCCCce-eeeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEe
Confidence               234455668899888 444431111122222233322233332        2335678988877666554 34 787


Q ss_pred             EEe--CCCC-----ceEEEeccC----CCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE-EecccCCceEEEEEeC
Q 047260          699 VWS--MASG-----ECIQELSSN----GNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSP  766 (784)
Q Consensus       699 IwD--l~t~-----~~i~~l~~~----~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafsp  766 (784)
                      -||  ..+|     +.+..++..    .-....+++..+|...+++-..++|..+|..+++.+ ++.-....|+++||--
T Consensus       184 a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG  263 (310)
T KOG4499|consen  184 AYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG  263 (310)
T ss_pred             eeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence            787  5554     334444321    112234556778888888888889999999999987 5666688899999974

>PRK10115 protease 2; Provisional

Probab=97.18  E-value=0.31  Score=58.95  Aligned_cols=198  Identities=9%  Similarity=0.027  Sum_probs=106.2

Q ss_pred             CCeEEEEEccCCCEEEEEeCC-----CeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCC-----CeEEE
Q 047260          550 SVVTDVRFRPNSSQLATASVD-----KSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDND-----NEIQY  619 (784)
Q Consensus       550 ~~It~i~fspdg~~Latgs~D-----g~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~d-----g~I~i  619 (784)
                      -.+..+.|+|++++|+.+...     ..|++.|+.++..+...+.+-   -..++|.+++..++++...+     ..|+.
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~---~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~  203 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV---EPSFVWANDSWTFYYVRKHPVTLLPYQVWR  203 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc---ceEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence            456778999999988876432     358889998765333333221   14699999988787776533     36888


Q ss_pred             EeCCCC--eeEEeec---CCee-EEEEecCCCEEEEEEC---CCcEEEEECC--CCeEEEEEeCCCCCEEEEEEcCCCCE
Q 047260          620 WSINPF--LCTHITK---GGTA-QVRFQPRIGQLLAAAS---DKVVSIFDIE--TDRQTHSLQGHAELVNYICWDTNGDY  688 (784)
Q Consensus       620 wDl~~~--~~~~~~~---~~v~-~v~fsp~~~~Ll~~s~---Dg~I~IwDl~--t~~~i~~l~~h~~~V~sl~~spdg~~  688 (784)
                      +++.+.  .....+.   .... .+..+.++.++++.+.   ++.+.+++..  .+.....+.........+. +..+.+
T Consensus       204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l  282 (686)
T PRK10115        204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRF  282 (686)
T ss_pred             EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEE
Confidence            888765  2222332   2222 2233447777665554   4678999853  3332222322223323332 333333


Q ss_pred             EEEEeCC----eEEEEeCCCCceEEEeccC--CCceEEEEEecCCCEEEEEECCC--eEEEEECCCCceEEe
Q 047260          689 LASVSQN----LVKVWSMASGECIQELSSN--GNQFHSCVFHPSYSTLLVVGGIS--SLELWNMAENKSMTI  752 (784)
Q Consensus       689 Lasgsdd----~I~IwDl~t~~~i~~l~~~--~~~I~sl~fspdg~~L~s~s~dg--~I~Iwdl~~~~~~~~  752 (784)
                      ++....+    .|...++........+..+  ...|..+.+..+ ..+++...++  .|.+++..++....+
T Consensus       283 y~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~-~l~~~~~~~g~~~l~~~~~~~~~~~~l  353 (686)
T PRK10115        283 YLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTD-WLVVEERQRGLTSLRQINRKTREVIGI  353 (686)
T ss_pred             EEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECC-EEEEEEEeCCEEEEEEEcCCCCceEEe
Confidence            3333322    4544555521122233333  236777777733 3444444455  456666654444333

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.15  E-value=0.029  Score=66.17  Aligned_cols=206  Identities=13%  Similarity=0.124  Sum_probs=114.8

Q ss_pred             CCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEe------CCC--eEEEEcCCCCcceeeeccCCCCCeEEEE
Q 047260          528 DRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATAS------VDK--SVRLWDAANPNFCSQAYTGHSSPIMSLD  599 (784)
Q Consensus       528 Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs------~Dg--~I~IWdl~~~~~~~~~~~~h~~~V~sl~  599 (784)
                      +|.+.-.+-.....+.-..+....+...+++|+|+.++...      .|.  .|.+++..  ........+.  ..+.-.
T Consensus       328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g--g~~~~lt~g~--~~t~Ps  403 (591)
T PRK13616        328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG--GVAVQVLEGH--SLTRPS  403 (591)
T ss_pred             CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC--CcceeeecCC--CCCCce
Confidence            55554443322222222223334678999999999887765      244  44444543  2222223332  378889


Q ss_pred             EcCCCCcEEEEEeC-----------CCeEEEEeCCCCeeEEeecCCeeEEEEecCCCEEEEEECCCcEEE---EECCCCe
Q 047260          600 FHPKKTDLFCFCDN-----------DNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSI---FDIETDR  665 (784)
Q Consensus       600 ~sp~~~~ll~sgs~-----------dg~I~iwDl~~~~~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~I---wDl~t~~  665 (784)
                      |+|++..+.+....           .+.+.+.+++.......+.+.+..+.|+|||.+++... ++.|++   -....+.
T Consensus       404 WspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~  482 (591)
T PRK13616        404 WSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ  482 (591)
T ss_pred             ECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc
Confidence            99997755554322           23454445554333334567899999999999988776 477777   4444443


Q ss_pred             E-E---EEEeC-CCCCEEEEEEcCCCCEEEEEeCC--eEEEEeCCCCceEEEecc--CCCceEEEEEecCCCEEEEEECC
Q 047260          666 Q-T---HSLQG-HAELVNYICWDTNGDYLASVSQN--LVKVWSMASGECIQELSS--NGNQFHSCVFHPSYSTLLVVGGI  736 (784)
Q Consensus       666 ~-i---~~l~~-h~~~V~sl~~spdg~~Lasgsdd--~I~IwDl~t~~~i~~l~~--~~~~I~sl~fspdg~~L~s~s~d  736 (784)
                      . +   ..+.. -...+..+.|..++.+++...+.  .+...++... ....+..  ....+..++-.+.  .|++...+
T Consensus       483 ~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~-~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~  559 (591)
T PRK13616        483 YALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGS-NSDALPSRNLSAPVVAVAASPS--TVYVTDAR  559 (591)
T ss_pred             eeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEecCCc-cccccCCCCccCceEEEecCCc--eEEEEcCC
Confidence            1 1   11222 23346889999999976554433  3444444422 2112222  2455666666653  46666666


Q ss_pred             CeEEE
Q 047260          737 SSLEL  741 (784)
Q Consensus       737 g~I~I  741 (784)
                      +.+.+
T Consensus       560 g~~~l  564 (591)
T PRK13616        560 AVLQL  564 (591)
T ss_pred             ceEEe
Confidence            64443

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.09  E-value=0.012  Score=65.48  Aligned_cols=133  Identities=12%  Similarity=0.116  Sum_probs=93.6

Q ss_pred             CCCEEEE-EECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCC--------EEEEEeCCeEEEEeCCCC-c-eEEEe
Q 047260          643 RIGQLLA-AASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGD--------YLASVSQNLVKVWSMASG-E-CIQEL  711 (784)
Q Consensus       643 ~~~~Ll~-~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~--------~Lasgsdd~I~IwDl~t~-~-~i~~l  711 (784)
                      +.+.|+. +.....|+-.|++.|+.+..++-+.. |+-+.+.|+.+        .|+.-+++.|.-||.+-. . .+...
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~  422 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV  422 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence            3344443 34467899999999999999987666 77777777654        355566779999998742 2 22222


Q ss_pred             ccC----CCceEEEEEecCCCEEEEEECCCeEEEEECCCCce-EEecccCCceEEEEEeCCCCEEEEEECC
Q 047260          712 SSN----GNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKS-MTIAAHENIISALAQSPVTGMVASASHD  777 (784)
Q Consensus       712 ~~~----~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~-~~~~~h~~~V~slafspdg~~LaSgs~D  777 (784)
                      ..|    .....|.+-..+| +|++|+.+|.|++||-..... ..+.+...+|..|..+.+|++|+..|..
T Consensus       423 q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~t  492 (644)
T KOG2395|consen  423 QSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKT  492 (644)
T ss_pred             eccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEeccc
Confidence            222    3445666665555 799999999999999733222 2667888899999999999988766643

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.08  E-value=0.23  Score=52.05  Aligned_cols=181  Identities=12%  Similarity=0.122  Sum_probs=120.2

Q ss_pred             CeEEEEEccCCCEEEEEeCCC--eEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeE
Q 047260          551 VVTDVRFRPNSSQLATASVDK--SVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCT  628 (784)
Q Consensus       551 ~It~i~fspdg~~Latgs~Dg--~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~  628 (784)
                      ..-.+.|..++.++-+.+.-|  .|+.+|+.+++..........---..|+...  +.++...-.++...+||.++.+.+
T Consensus        46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~--d~l~qLTWk~~~~f~yd~~tl~~~  123 (264)
T PF05096_consen   46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG--DKLYQLTWKEGTGFVYDPNTLKKI  123 (264)
T ss_dssp             EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET--TEEEEEESSSSEEEEEETTTTEEE
T ss_pred             cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC--CEEEEEEecCCeEEEEccccceEE
Confidence            345678877888888877766  7899999998744333333333334455543  346777778999999999998887


Q ss_pred             Eeec--CCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCC-----CCCEEEEEEcCCCCEEEEEe-CCeEEEE
Q 047260          629 HITK--GGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGH-----AELVNYICWDTNGDYLASVS-QNLVKVW  700 (784)
Q Consensus       629 ~~~~--~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h-----~~~V~sl~~spdg~~Lasgs-dd~I~Iw  700 (784)
                      ..+.  +.-..++  .++..|+.......|+++|..+.+....+...     -..++-+.|- +|.+.|-.= .+.|...
T Consensus       124 ~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~I  200 (264)
T PF05096_consen  124 GTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRI  200 (264)
T ss_dssp             EEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEE
T ss_pred             EEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEE
Confidence            7665  3444455  57788888888899999999988777766532     2245667775 565555444 5699999


Q ss_pred             eCCCCceEEEecc---------------CCCceEEEEEecCCCEEEEEECC
Q 047260          701 SMASGECIQELSS---------------NGNQFHSCVFHPSYSTLLVVGGI  736 (784)
Q Consensus       701 Dl~t~~~i~~l~~---------------~~~~I~sl~fspdg~~L~s~s~d  736 (784)
                      |..+|+++..+..               .....+.++|.|....|++.+..
T Consensus       201 dp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~  251 (264)
T PF05096_consen  201 DPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL  251 (264)
T ss_dssp             ETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred             eCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence            9999998887631               12457999999998888777754

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>smart00320 WD40 WD40 repeats

Probab=97.08  E-value=0.0014  Score=45.01  Aligned_cols=38  Identities=34%  Similarity=0.585  Sum_probs=33.8

Q ss_pred             eEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 047260          498 CEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWN  535 (784)
Q Consensus       498 ~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd  535 (784)
                      ..+..+..|...|.++.|++++.++++++.|+.|++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            34566778999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>smart00667 LisH Lissencephaly type-1-like homology motif

Probab=97.04  E-value=0.00087  Score=46.86  Aligned_cols=31  Identities=19%  Similarity=0.383  Sum_probs=28.3

Q ss_pred             HHhHHHHHHHHhhcCChHHHHHHHHHhcCCC
Q 047260            9 DKMLDVYIHDYFLKRKLHASAKAFMTEGKVA   39 (784)
Q Consensus         9 ~~~l~~yiydy~~k~~~~~~a~~~~~e~~~~   39 (784)
                      ++.|+..|++||.+.|+.++|++|.+|.++.
T Consensus         3 ~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~   33 (34)
T smart00667        3 RSELNRLILEYLLRNGYEETAETLQKESGLS   33 (34)
T ss_pred             HHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence            5678999999999999999999999998764

Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.96  E-value=0.014  Score=69.96  Aligned_cols=125  Identities=12%  Similarity=0.130  Sum_probs=89.7

Q ss_pred             CCCcEEEEECCCCeEEEEEeCCCCC-EEEEEEcC------CCCEEEEEeCCeEEEEeCCCC--ceEEE-e--ccCCCceE
Q 047260          652 SDKVVSIFDIETDRQTHSLQGHAEL-VNYICWDT------NGDYLASVSQNLVKVWSMASG--ECIQE-L--SSNGNQFH  719 (784)
Q Consensus       652 ~Dg~I~IwDl~t~~~i~~l~~h~~~-V~sl~~sp------dg~~Lasgsdd~I~IwDl~t~--~~i~~-l--~~~~~~I~  719 (784)
                      ....|+-.|++.|+.+..+..+... |..++-..      +...++..+++.|..||.|-.  +++.. .  -.....+.
T Consensus       502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs  581 (794)
T PF08553_consen  502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFS  581 (794)
T ss_pred             CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCce
Confidence            3588999999999999999987654 66554321      234566666779999999863  23321 1  12345577


Q ss_pred             EEEEecCCCEEEEEECCCeEEEEECCCCceE-EecccCCceEEEEEeCCCCEEEEEECC
Q 047260          720 SCVFHPSYSTLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHD  777 (784)
Q Consensus       720 sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg~~LaSgs~D  777 (784)
                      |++-+.+| +|++|+.+|.|++||-...... .+.+-..+|.+|+.+.||++|+..|..
T Consensus       582 ~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t  639 (794)
T PF08553_consen  582 CFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKT  639 (794)
T ss_pred             EEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc
Confidence            77777766 6999999999999995432222 455778999999999999988876644

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.90  E-value=0.037  Score=66.42  Aligned_cols=141  Identities=10%  Similarity=0.042  Sum_probs=96.5

Q ss_pred             CCCEEEEE-eCCCeEEEEECCCCceeeecCCCCCC-eEEEEEcc-----CCCEEEEEeCCCeEEEEcCCCCc-ceee-ec
Q 047260          518 DGKLLASS-GHDRKVVLWNMDTLQTESTPEDHKSV-VTDVRFRP-----NSSQLATASVDKSVRLWDAANPN-FCSQ-AY  588 (784)
Q Consensus       518 dg~~Lasg-s~Dg~I~IWd~~t~~~~~~l~~h~~~-It~i~fsp-----dg~~Latgs~Dg~I~IWdl~~~~-~~~~-~~  588 (784)
                      +.+.|+.. .....|+-.|++.|+.+..+..|... |..++-..     +..-.+.|-.+..+..||.+-.. .++. ..
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~  571 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS  571 (794)
T ss_pred             ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence            33444332 34577999999999999999887754 55554321     23456777788899999988643 1221 11


Q ss_pred             --cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe---eEEeecCCeeEEEEecCCCEEEEEECCCcEEEEEC
Q 047260          589 --TGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFL---CTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDI  661 (784)
Q Consensus       589 --~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~---~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl  661 (784)
                        ........|++-..+|  .|++|+.+|.||+||--...   .+..+..+|..|.++.+|+++++.|. ..|.+++.
T Consensus       572 k~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t  646 (794)
T PF08553_consen  572 KQYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLIDT  646 (794)
T ss_pred             cccccCCCceEEEecCCc--eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence              1234567788777666  68899999999999954322   22334579999999999999988775 55666664

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>smart00320 WD40 WD40 repeats

Probab=96.87  E-value=0.0024  Score=43.80  Aligned_cols=38  Identities=39%  Similarity=0.631  Sum_probs=33.5

Q ss_pred             ceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEc
Q 047260          540 QTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWD  577 (784)
Q Consensus       540 ~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWd  577 (784)
                      +....+..|...|.++.|.+++..+++++.|+.|++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            44566667889999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.81  E-value=1.1  Score=49.96  Aligned_cols=216  Identities=11%  Similarity=0.157  Sum_probs=103.7

Q ss_pred             CCCEEEEEe-CCCeEEEEECCC----CceeeecCC---CC----CCeEEEEEccCCCEEEEEeC------CCeEEEEcCC
Q 047260          518 DGKLLASSG-HDRKVVLWNMDT----LQTESTPED---HK----SVVTDVRFRPNSSQLATASV------DKSVRLWDAA  579 (784)
Q Consensus       518 dg~~Lasgs-~Dg~I~IWd~~t----~~~~~~l~~---h~----~~It~i~fspdg~~Latgs~------Dg~I~IWdl~  579 (784)
                      +.++|+..+ ..+.|+|+|+.+    -+..++++.   +.    ..-..+..-|+|++++++-.      -|.+.+.|-+
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence            456777766 678899999973    334444432   11    22334555578988888632      2567888877


Q ss_pred             CCcceeeeccC---CCCCeEEEEEcCCCCcEEEEEeC--------------------CCeEEEEeCCCCeeEEeecCC--
Q 047260          580 NPNFCSQAYTG---HSSPIMSLDFHPKKTDLFCFCDN--------------------DNEIQYWSINPFLCTHITKGG--  634 (784)
Q Consensus       580 ~~~~~~~~~~~---h~~~V~sl~~sp~~~~ll~sgs~--------------------dg~I~iwDl~~~~~~~~~~~~--  634 (784)
                      +.+ +......   ...--..+-|.|..+ +++++..                    ...+.+||+.+.+.+..+.-+  
T Consensus       166 tf~-v~g~We~~~~~~~~gYDfw~qpr~n-vMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~  243 (461)
T PF05694_consen  166 TFE-VKGRWEKDRGPQPFGYDFWYQPRHN-VMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE  243 (461)
T ss_dssp             T---EEEE--SB-TT------EEEETTTT-EEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT
T ss_pred             ccc-ccceeccCCCCCCCCCCeEEcCCCC-EEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC
Confidence            654 3333322   223356677788655 5555432                    358999999999888777632  


Q ss_pred             ---eeEEEE--ecCCCEEEEEEC-CCcEEEE-ECCCCe----EEEEEeCC-----------------CCCEEEEEEcCCC
Q 047260          635 ---TAQVRF--QPRIGQLLAAAS-DKVVSIF-DIETDR----QTHSLQGH-----------------AELVNYICWDTNG  686 (784)
Q Consensus       635 ---v~~v~f--sp~~~~Ll~~s~-Dg~I~Iw-Dl~t~~----~i~~l~~h-----------------~~~V~sl~~spdg  686 (784)
                         ...|+|  .|+..+-++++. ...|..| ..+.++    .+..+...                 ..-|+.|.+|.|.
T Consensus       244 g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDD  323 (461)
T PF05694_consen  244 GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDD  323 (461)
T ss_dssp             EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS
T ss_pred             CCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCC
Confidence               345665  455666555554 4555444 334332    22222210                 2457999999999


Q ss_pred             CEEEEEe--CCeEEEEeCCCC---ceEEEeccC----------------CCceEEEEEecCCCEEEEEEC
Q 047260          687 DYLASVS--QNLVKVWSMASG---ECIQELSSN----------------GNQFHSCVFHPSYSTLLVVGG  735 (784)
Q Consensus       687 ~~Lasgs--dd~I~IwDl~t~---~~i~~l~~~----------------~~~I~sl~fspdg~~L~s~s~  735 (784)
                      ++|..+.  .+.|+.||+.+.   +.+..+...                .+...-+..|-||+.|++.++
T Consensus       324 rfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS  393 (461)
T PF05694_consen  324 RFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS  393 (461)
T ss_dssp             -EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred             CEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence            9999988  669999999874   333332211                112356778889988887754

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.80  E-value=0.16  Score=51.58  Aligned_cols=175  Identities=15%  Similarity=0.235  Sum_probs=96.9

Q ss_pred             EEEEEeCCCeEEEEEC--CCCceeeecCC-----CCCCeEEEEEccCCCEEEEEeCC---------CeEEEEcCCCCcce
Q 047260          521 LLASSGHDRKVVLWNM--DTLQTESTPED-----HKSVVTDVRFRPNSSQLATASVD---------KSVRLWDAANPNFC  584 (784)
Q Consensus       521 ~Lasgs~Dg~I~IWd~--~t~~~~~~l~~-----h~~~It~i~fspdg~~Latgs~D---------g~I~IWdl~~~~~~  584 (784)
                      +.+.++..-.|.=||.  ...+..+++..     .....++-..+|+|++++-.-.|         |.++.|-....   
T Consensus        73 ~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~---  149 (310)
T KOG4499|consen   73 FAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQ---  149 (310)
T ss_pred             EEEeecceEEEEEcccccceeeeeeeccccCchHHhcccccCccCCCCceeeeeeccccccccccccEEEEeccCCC---
Confidence            4444444444556773  23333333221     13455666778999985433222         33444433321   


Q ss_pred             eeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCC
Q 047260          585 SQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETD  664 (784)
Q Consensus       585 ~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~  664 (784)
                      +..+...-..-..++|+.+...+.++-+.+-+|.-||.+-                       -+|...+.=.|||++..
T Consensus       150 v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~-----------------------~tG~~snr~~i~dlrk~  206 (310)
T KOG4499|consen  150 VELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDC-----------------------PTGDLSNRKVIFDLRKS  206 (310)
T ss_pred             ceeeehhccCCccccccccCcEEEEEccCceEEeeeecCC-----------------------CcccccCcceeEEeccC
Confidence            1111111222345667766665556556666666665431                       01111233346666654


Q ss_pred             eEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecC
Q 047260          665 RQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPS  726 (784)
Q Consensus       665 ~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspd  726 (784)
                      ++...+.     --.++.+.+|.+.+++-.+ +|...|..+|+.+.++.-....|++|+|--.
T Consensus       207 ~~~e~~~-----PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGk  264 (310)
T KOG4499|consen  207 QPFESLE-----PDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGK  264 (310)
T ss_pred             CCcCCCC-----CCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence            3322221     1224446678877777655 9999999999999999999999999999644

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.79  E-value=0.043  Score=49.56  Aligned_cols=101  Identities=15%  Similarity=0.161  Sum_probs=66.6

Q ss_pred             eEEEEEcC---CC-CEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCccee
Q 047260          510 VTCCHFSS---DG-KLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCS  585 (784)
Q Consensus       510 V~~l~fsp---dg-~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~  585 (784)
                      |+++++..   || +.|++|+.|..|+||+-+  ..+..+. -.+.|++++-... ..|+.+..+|+|-+|+-....  -
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~Rl--W   75 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRL--W   75 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeCccee--e
Confidence            56666655   43 479999999999999865  5556664 3456777776655 579999999999999764322  2


Q ss_pred             eeccCCCCCeEEEEEc---CCCCcEEEEEeCCCeEE
Q 047260          586 QAYTGHSSPIMSLDFH---PKKTDLFCFCDNDNEIQ  618 (784)
Q Consensus       586 ~~~~~h~~~V~sl~~s---p~~~~ll~sgs~dg~I~  618 (784)
                      +.-.  ...+.++.+.   .+|..-|++|-.+|.|-
T Consensus        76 RiKS--K~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   76 RIKS--KNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eecc--CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            2212  2235555543   34555677777777764

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=96.41  E-value=0.32  Score=54.68  Aligned_cols=81  Identities=16%  Similarity=0.260  Sum_probs=53.9

Q ss_pred             EEEEeCCCCCEEEEEEcCCCCEEEEEeCC--eEEEEeCCCCceEEEeccCCCceEEEEEe----cCC-------------
Q 047260          667 THSLQGHAELVNYICWDTNGDYLASVSQN--LVKVWSMASGECIQELSSNGNQFHSCVFH----PSY-------------  727 (784)
Q Consensus       667 i~~l~~h~~~V~sl~~spdg~~Lasgsdd--~I~IwDl~t~~~i~~l~~~~~~I~sl~fs----pdg-------------  727 (784)
                      ...+......+.+|+.+|++.+.++. |+  .|.++|+.++..++.+++..+.-  |.|.    +..             
T Consensus       300 r~~l~D~~R~~~~i~~sP~~~laA~t-DslGRV~LiD~~~~~vvrmWKGYRdAq--c~wi~~~~~~~~~~~~~~~~~~~~  376 (415)
T PF14655_consen  300 RFGLPDSKREGESICLSPSGRLAAVT-DSLGRVLLIDVARGIVVRMWKGYRDAQ--CGWIEVPEEGDRDRSNSNSPKSSS  376 (415)
T ss_pred             EEeeccCCceEEEEEECCCCCEEEEE-cCCCcEEEEECCCChhhhhhccCccce--EEEEEeecccccccccccccCCCC
Confidence            34455566678999999998877775 54  99999999998888877654321  1111    110             


Q ss_pred             --CE--EEEEECCCeEEEEECCCCceE
Q 047260          728 --ST--LLVVGGISSLELWNMAENKSM  750 (784)
Q Consensus       728 --~~--L~s~s~dg~I~Iwdl~~~~~~  750 (784)
                        ..  ++.+-.-|.|.||++..+..+
T Consensus       377 ~~~l~LvIyaprRg~lEvW~~~~g~Rv  403 (415)
T PF14655_consen  377 RFALFLVIYAPRRGILEVWSMRQGPRV  403 (415)
T ss_pred             cceEEEEEEeccCCeEEEEecCCCCEE
Confidence              11  233344678999999887654

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.41  E-value=0.015  Score=66.18  Aligned_cols=92  Identities=14%  Similarity=0.143  Sum_probs=77.7

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceE-EEEEecCCCEEEEEECCCeEEEEECCCCceEE
Q 047260          674 AELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFH-SCVFHPSYSTLLVVGGISSLELWNMAENKSMT  751 (784)
Q Consensus       674 ~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~-sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~  751 (784)
                      ...|..+.|+|.-.++|.+..+ .|.++.+. ...+.++..++..++ +++|.|||+.|++|-.||+|++-|+.++..+.
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~   98 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV   98 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence            3467789999999999998865 79999888 788888887777777 99999999999999999999999999998774


Q ss_pred             e--cccCCceEEEEEeC
Q 047260          752 I--AAHENIISALAQSP  766 (784)
Q Consensus       752 ~--~~h~~~V~slafsp  766 (784)
                      -  ......|.++.|.+
T Consensus        99 ~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   99 SFLFSVETDISKGIWDR  115 (665)
T ss_pred             ccccccccchheeeccc
Confidence            3  55666788888863

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.40  E-value=1.1  Score=47.08  Aligned_cols=155  Identities=8%  Similarity=0.030  Sum_probs=94.8

Q ss_pred             CeEEEEEcCCCCcEEEEE--eCCCeEEEEeCCCCeeEEeecCCeeEEEEecCCCEEEEEECCCcEEEEE-CCCCeEE-EE
Q 047260          594 PIMSLDFHPKKTDLFCFC--DNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFD-IETDRQT-HS  669 (784)
Q Consensus       594 ~V~sl~~sp~~~~ll~sg--s~dg~I~iwDl~~~~~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwD-l~t~~~i-~~  669 (784)
                      .+.+.++++++..+.+..  .....++++..............+..-.|++++...++...+...+++. ...+... ..
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~  104 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVE  104 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEE
Confidence            688999999998777766  4455666666554333333335677778999966555555566666663 3333221 22


Q ss_pred             EeC--CCCCEEEEEEcCCCCEEEEEe----CCeEEEEeCC---CC------ceEEEeccCCCceEEEEEecCCCEEEEEE
Q 047260          670 LQG--HAELVNYICWDTNGDYLASVS----QNLVKVWSMA---SG------ECIQELSSNGNQFHSCVFHPSYSTLLVVG  734 (784)
Q Consensus       670 l~~--h~~~V~sl~~spdg~~Lasgs----dd~I~IwDl~---t~------~~i~~l~~~~~~I~sl~fspdg~~L~s~s  734 (784)
                      +..  ....|..+.++|||..++...    ++.|.|--+.   .+      ..+.........+..+.|.+++.+++.+.
T Consensus       105 v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~  184 (253)
T PF10647_consen  105 VDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGR  184 (253)
T ss_pred             ecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeC
Confidence            221  122899999999999888766    4466666543   22      11222223356789999999998776666


Q ss_pred             CCCe-EEE-EECCCCc
Q 047260          735 GISS-LEL-WNMAENK  748 (784)
Q Consensus       735 ~dg~-I~I-wdl~~~~  748 (784)
                      ..+. +.. .....+.
T Consensus       185 ~~~~~~~~~v~~dG~~  200 (253)
T PF10647_consen  185 SAGGPVVRLVSVDGGP  200 (253)
T ss_pred             CCCCceeEEEEccCCc
Confidence            5542 333 4444443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.39  E-value=0.27  Score=51.38  Aligned_cols=168  Identities=15%  Similarity=0.185  Sum_probs=107.8

Q ss_pred             cCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCCeeEEEEecCCCEEEEE-ECCC-cEEEEECCCCeEEEEEeCCCC--C
Q 047260          601 HPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAA-ASDK-VVSIFDIETDRQTHSLQGHAE--L  676 (784)
Q Consensus       601 sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v~~v~fsp~~~~Ll~~-s~Dg-~I~IwDl~t~~~i~~l~~h~~--~  676 (784)
                      ..++.+-+++.+.+|.|..        ...+......+.|+|....-++- -.-| ...+||......+..+...++  .
T Consensus        44 ~~dgs~g~a~~~eaGk~v~--------~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHf  115 (366)
T COG3490          44 ARDGSFGAATLSEAGKIVF--------ATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHF  115 (366)
T ss_pred             ccCCceeEEEEccCCceee--------eeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCcee
Confidence            4566666666666665432        11223444567777766554333 3333 467888887765555433222  1


Q ss_pred             EEEEEEcCCCCEEEEEeC------CeEEEEeCCCC-ceEEEeccCCCceEEEEEecCCCEEEEEECC-------C-----
Q 047260          677 VNYICWDTNGDYLASVSQ------NLVKVWSMASG-ECIQELSSNGNQFHSCVFHPSYSTLLVVGGI-------S-----  737 (784)
Q Consensus       677 V~sl~~spdg~~Lasgsd------d~I~IwDl~t~-~~i~~l~~~~~~I~sl~fspdg~~L~s~s~d-------g-----  737 (784)
                      .-.=+|+|||++|.....      +.|-|||.+.+ ..+.++..|.-....+.|.+||+.++++...       |     
T Consensus       116 yGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lN  195 (366)
T COG3490         116 YGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELN  195 (366)
T ss_pred             ecccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccc
Confidence            223479999999998763      27999999865 5778888888888999999999988887651       1     


Q ss_pred             ------eEEEEECCCCceE---Eec--ccCCceEEEEEeCCCCEEEEEEC
Q 047260          738 ------SLELWNMAENKSM---TIA--AHENIISALAQSPVTGMVASASH  776 (784)
Q Consensus       738 ------~I~Iwdl~~~~~~---~~~--~h~~~V~slafspdg~~LaSgs~  776 (784)
                            ++.+.|..++..+   ++.  .+.-.|..++..+||..++.+-.
T Consensus       196 ldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy  245 (366)
T COG3490         196 LDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQY  245 (366)
T ss_pred             hhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEe
Confidence                  3444555555544   222  34557889999888877766533

>PHA02713 hypothetical protein; Provisional

Probab=96.35  E-value=0.29  Score=57.76  Aligned_cols=214  Identities=8%  Similarity=0.053  Sum_probs=103.6

Q ss_pred             eEEEEECCCCceee--ecCCCCCCeEEEEEccCCCEEEEEeCC------CeEEEEcCCCCcceeee-ccCCCCCeEEEEE
Q 047260          530 KVVLWNMDTLQTES--TPEDHKSVVTDVRFRPNSSQLATASVD------KSVRLWDAANPNFCSQA-YTGHSSPIMSLDF  600 (784)
Q Consensus       530 ~I~IWd~~t~~~~~--~l~~h~~~It~i~fspdg~~Latgs~D------g~I~IWdl~~~~~~~~~-~~~h~~~V~sl~~  600 (784)
                      .+..||..+.+-..  .+...... .+++. -++.+++.|+.+      ..+..||..+....... ........ +++.
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~~  349 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLAV  349 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEEE
Confidence            46778887654322  22111111 12222 266777777754      34778888775432111 11111111 2222


Q ss_pred             cCCCCcEEEEEeCCC-----eEEEEeCCCCeeEEee--cCCeeEE-EEecCCCEEEEEECC-------------------
Q 047260          601 HPKKTDLFCFCDNDN-----EIQYWSINPFLCTHIT--KGGTAQV-RFQPRIGQLLAAASD-------------------  653 (784)
Q Consensus       601 sp~~~~ll~sgs~dg-----~I~iwDl~~~~~~~~~--~~~v~~v-~fsp~~~~Ll~~s~D-------------------  653 (784)
                      .  +..+++.|+.++     .+..||..+..-....  ..+.... ...-++..+++|+.+                   
T Consensus       350 ~--~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~  427 (557)
T PHA02713        350 I--DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEED  427 (557)
T ss_pred             E--CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCccccccccccccccccccc
Confidence            2  234777777653     4788898765433221  1111111 112245555556544                   


Q ss_pred             ----CcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-C------CeEEEEeCCC-C--ceEEEeccCCCceE
Q 047260          654 ----KVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVS-Q------NLVKVWSMAS-G--ECIQELSSNGNQFH  719 (784)
Q Consensus       654 ----g~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgs-d------d~I~IwDl~t-~--~~i~~l~~~~~~I~  719 (784)
                          ..|..||.++.+-...-.-.......-...-++++.+.|+ +      ..+..||..+ .  ..+..+........
T Consensus       428 ~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~  507 (557)
T PHA02713        428 THSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALH  507 (557)
T ss_pred             ccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccce
Confidence                2477788876543211111111111111123456555554 2      1467899886 3  33344433322222


Q ss_pred             EEEEecCCCEEEEEECCC--eEEEEECCCCceE
Q 047260          720 SCVFHPSYSTLLVVGGIS--SLELWNMAENKSM  750 (784)
Q Consensus       720 sl~fspdg~~L~s~s~dg--~I~Iwdl~~~~~~  750 (784)
                      .+++  ++...++|+.++  .+..||..+++-.
T Consensus       508 ~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~  538 (557)
T PHA02713        508 TILH--DNTIMMLHCYESYMLQDTFNVYTYEWN  538 (557)
T ss_pred             eEEE--CCEEEEEeeecceeehhhcCccccccc
Confidence            2222  666777888777  7888998887655

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.31  E-value=1.7  Score=47.76  Aligned_cols=72  Identities=13%  Similarity=0.111  Sum_probs=43.7

Q ss_pred             EEeccCCCceEEEEEecC-------CCEEEEEECCCeEEEEECCCCceE----Ee-cccCCceEEEEEeCCCCEEEEEEC
Q 047260          709 QELSSNGNQFHSCVFHPS-------YSTLLVVGGISSLELWNMAENKSM----TI-AAHENIISALAQSPVTGMVASASH  776 (784)
Q Consensus       709 ~~l~~~~~~I~sl~fspd-------g~~L~s~s~dg~I~Iwdl~~~~~~----~~-~~h~~~V~slafspdg~~LaSgs~  776 (784)
                      ..+..| ..+..+.|...       +.++++.-..+.|....+.....+    .+ .....++..|++.|||.++++.+.
T Consensus       247 ~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~  325 (331)
T PF07995_consen  247 FAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDS  325 (331)
T ss_dssp             EEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-T
T ss_pred             eeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECC
Confidence            334333 44566666533       334555544568888887655333    22 234558999999999999998888


Q ss_pred             CCcEE
Q 047260          777 DSSVK  781 (784)
Q Consensus       777 DG~V~  781 (784)
                      +|.|.
T Consensus       326 ~G~iy  330 (331)
T PF07995_consen  326 DGKIY  330 (331)
T ss_dssp             TTTEE
T ss_pred             CCeEe
Confidence            88874

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=96.29  E-value=2.2  Score=51.56  Aligned_cols=242  Identities=14%  Similarity=0.100  Sum_probs=125.1

Q ss_pred             eEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCC--CCc-
Q 047260          530 KVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPK--KTD-  606 (784)
Q Consensus       530 ~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~--~~~-  606 (784)
                      .||+++-.  .....+. ....++....+.+...++.++.++.+...++................|.|++++|-  ++. 
T Consensus       471 ~iRl~ss~--~~~~~W~-~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~  547 (1096)
T KOG1897|consen  471 SIRLVSSA--GLRSEWR-PPGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNK  547 (1096)
T ss_pred             cEEEEcch--hhhhccc-CCCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCc
Confidence            37777655  1222222 33445555555566678888887888877877655222223344578999999975  444 


Q ss_pred             --EEEEEeCCCeEEEEeCCCCeeEEee--------cCCeeEEEEecCCCEEEEEECCCcEEEEEC--CCCeEEEEE--eC
Q 047260          607 --LFCFCDNDNEIQYWSINPFLCTHIT--------KGGTAQVRFQPRIGQLLAAASDKVVSIFDI--ETDRQTHSL--QG  672 (784)
Q Consensus       607 --ll~sgs~dg~I~iwDl~~~~~~~~~--------~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl--~t~~~i~~l--~~  672 (784)
                        +++.|.++..+.+.-..+..++..+        ...+.-..+-.+..+|+++..||.+.-|-+  .++..-..-  .-
T Consensus       548 s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~l  627 (1096)
T KOG1897|consen  548 SRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTL  627 (1096)
T ss_pred             ceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEcccccccc
Confidence              8888887766655443332222221        123333445566788999999999876654  444322111  11


Q ss_pred             CCCCEEEEEEcC-CCCEEEEEeCCeEEEEeCCCCceEEEeccCCCceEEEEEecC-CCEEEEEECCCeEEEEECCCCceE
Q 047260          673 HAELVNYICWDT-NGDYLASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPS-YSTLLVVGGISSLELWNMAENKSM  750 (784)
Q Consensus       673 h~~~V~sl~~sp-dg~~Lasgsdd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspd-g~~L~s~s~dg~I~Iwdl~~~~~~  750 (784)
                      ...++.--.|+. ....+++++|.-..+|..+..-+...+.-. ..-.-|.|+.+ .+-.++....+.+++.-++.-..+
T Consensus       628 Gt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~k-ev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl  706 (1096)
T KOG1897|consen  628 GTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLK-EVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQKL  706 (1096)
T ss_pred             CCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchH-HhhhhcccccccCCceEEEecCCceEEEEecchhhc
Confidence            233444445554 455677777775555654432222222111 11112223322 222333333445666665543332


Q ss_pred             --EecccCCceEEEEEeCCCCEEEEEE
Q 047260          751 --TIAAHENIISALAQSPVTGMVASAS  775 (784)
Q Consensus       751 --~~~~h~~~V~slafspdg~~LaSgs  775 (784)
                        ....-...+..+++.+....+++.+
T Consensus       707 ~irtvpl~~~prrI~~q~~sl~~~v~s  733 (1096)
T KOG1897|consen  707 HIRTVPLGESPRRICYQESSLTFGVLS  733 (1096)
T ss_pred             ceeeecCCCChhheEecccceEEEEEe
Confidence              1123334456677766444444443

>PRK13684 Ycf48-like protein; Provisional

Probab=96.28  E-value=2.4  Score=46.62  Aligned_cols=266  Identities=8%  Similarity=-0.012  Sum_probs=130.7

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeec----CCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCC-
Q 047260          507 NSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTP----EDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANP-  581 (784)
Q Consensus       507 ~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l----~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~-  581 (784)
                      ...+++++|..+.+-+|+|. +|.|.. ..+.++.-...    ......+.++.|.++ ..+++ +..+.|  |..+++ 
T Consensus        45 ~~~l~~v~F~d~~~g~avG~-~G~il~-T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~-G~~g~i--~~S~DgG  118 (334)
T PRK13684         45 EANLLDIAFTDPNHGWLVGS-NRTLLE-TNDGGETWEERSLDLPEENFRLISISFKGD-EGWIV-GQPSLL--LHTTDGG  118 (334)
T ss_pred             CCceEEEEEeCCCcEEEEEC-CCEEEE-EcCCCCCceECccCCcccccceeeeEEcCC-cEEEe-CCCceE--EEECCCC
Confidence            55799999986666666654 553332 11222221111    112334778888643 33444 444543  322322 


Q ss_pred             cceeeecc--CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCC--CCeeEE-eecCCeeEEEEecCCCEEEEEECCCcE
Q 047260          582 NFCSQAYT--GHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSIN--PFLCTH-ITKGGTAQVRFQPRIGQLLAAASDKVV  656 (784)
Q Consensus       582 ~~~~~~~~--~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~--~~~~~~-~~~~~v~~v~fsp~~~~Ll~~s~Dg~I  656 (784)
                      +.-.....  ........+.....+. .++++ ..|.|..-+-.  +...+. ...+.+..+.+.+++. +++.+..|.+
T Consensus       119 ~tW~~~~~~~~~~~~~~~i~~~~~~~-~~~~g-~~G~i~~S~DgG~tW~~~~~~~~g~~~~i~~~~~g~-~v~~g~~G~i  195 (334)
T PRK13684        119 KNWTRIPLSEKLPGSPYLITALGPGT-AEMAT-NVGAIYRTTDGGKNWEALVEDAAGVVRNLRRSPDGK-YVAVSSRGNF  195 (334)
T ss_pred             CCCeEccCCcCCCCCceEEEEECCCc-ceeee-ccceEEEECCCCCCceeCcCCCcceEEEEEECCCCe-EEEEeCCceE
Confidence            11111110  0111122222222222 33333 34444322211  111111 1135567888888764 4455555655


Q ss_pred             EEEECCCCeEEEEE-eCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEEEecc----CCCceEEEEEecCCCEEE
Q 047260          657 SIFDIETDRQTHSL-QGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELSS----NGNQFHSCVFHPSYSTLL  731 (784)
Q Consensus       657 ~IwDl~t~~~i~~l-~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~~l~~----~~~~I~sl~fspdg~~L~  731 (784)
                      ..-.-..++....+ ......++++.+.+++.+++++..+.+++=+...+..-.....    ....+..+.+.+++. ++
T Consensus       196 ~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~-~~  274 (334)
T PRK13684        196 YSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGE-IW  274 (334)
T ss_pred             EEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCC-EE
Confidence            43211122222222 2345678999999999988888777654323444432222211    223467888998776 55


Q ss_pred             EEECCCeEEEEECCCCceEEec----ccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          732 VVGGISSLELWNMAENKSMTIA----AHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       732 s~s~dg~I~Iwdl~~~~~~~~~----~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      +++.+|.|. .....++.-...    .-....+.+.|..+++.++ .+..|.|..|+
T Consensus       275 ~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~  329 (334)
T PRK13684        275 AGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYV  329 (334)
T ss_pred             EEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEec
Confidence            666677555 344544443221    2223577888887766666 45678877664

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.22  E-value=0.044  Score=65.84  Aligned_cols=97  Identities=19%  Similarity=0.203  Sum_probs=70.9

Q ss_pred             CCCEEEEEeCCCeEEEEECCCC-ceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeE
Q 047260          518 DGKLLASSGHDRKVVLWNMDTL-QTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIM  596 (784)
Q Consensus       518 dg~~Lasgs~Dg~I~IWd~~t~-~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~  596 (784)
                      .+..++.|++.|.|-..|+... .....-..-.++|++++|+.+|+.++.|-.+|.|.+||+..++ ..+.+..|..+.+
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k-~l~~i~e~~ap~t  176 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAK-ILKVITEHGAPVT  176 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCc-ceeeeeecCCccc
Confidence            3557899999999999998752 2222223456899999999999999999999999999999866 5666666665555


Q ss_pred             EEE---EcCCCCcEEEEEeCCCe
Q 047260          597 SLD---FHPKKTDLFCFCDNDNE  616 (784)
Q Consensus       597 sl~---~sp~~~~ll~sgs~dg~  616 (784)
                      .+-   +..++. .+.+++..|.
T Consensus       177 ~vi~v~~t~~nS-~llt~D~~Gs  198 (1206)
T KOG2079|consen  177 GVIFVGRTSQNS-KLLTSDTGGS  198 (1206)
T ss_pred             eEEEEEEeCCCc-EEEEccCCCc
Confidence            443   333333 6777777776

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.16  E-value=0.35  Score=57.13  Aligned_cols=226  Identities=14%  Similarity=0.115  Sum_probs=116.8

Q ss_pred             CCCEEEEEeCCC------eEEEEECCCCceeeecC-CCCCCeEEEEEccCCCEEEEEeCC------CeEEEEcCCCCcce
Q 047260          518 DGKLLASSGHDR------KVVLWNMDTLQTESTPE-DHKSVVTDVRFRPNSSQLATASVD------KSVRLWDAANPNFC  584 (784)
Q Consensus       518 dg~~Lasgs~Dg------~I~IWd~~t~~~~~~l~-~h~~~It~i~fspdg~~Latgs~D------g~I~IWdl~~~~~~  584 (784)
                      .+.+++.||.++      .|..||..+........ .+...-.+++.. ++.+.++|+.|      .++..||..+....
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~  362 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWT  362 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCcee
Confidence            455667777663      58888887764333221 122223344444 56788889888      35778888876632


Q ss_pred             eeeccCCCCCeEEEEEcCCCCcEEEEEeCCC-----eEEEEeCCCCeeEEee--cCCeeEEEEe-cCCCEEEEEECC---
Q 047260          585 SQAYTGHSSPIMSLDFHPKKTDLFCFCDNDN-----EIQYWSINPFLCTHIT--KGGTAQVRFQ-PRIGQLLAAASD---  653 (784)
Q Consensus       585 ~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg-----~I~iwDl~~~~~~~~~--~~~v~~v~fs-p~~~~Ll~~s~D---  653 (784)
                      .  ...-...-..+....-+..++++|+.||     .|-.||..+.+.....  .......... -++...++|+.+   
T Consensus       363 ~--~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~  440 (571)
T KOG4441|consen  363 P--VAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSS  440 (571)
T ss_pred             c--cCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCc
Confidence            2  1111111111111222345888888886     4677777654433222  2223333332 344555566643   


Q ss_pred             ---CcEEEEECCCCeEEE--EEeCCCCCEEEEEEcCCCCEEEEEe-CC-----eEEEEeCCCCceEEE--eccCCCceEE
Q 047260          654 ---KVVSIFDIETDRQTH--SLQGHAELVNYICWDTNGDYLASVS-QN-----LVKVWSMASGECIQE--LSSNGNQFHS  720 (784)
Q Consensus       654 ---g~I~IwDl~t~~~i~--~l~~h~~~V~sl~~spdg~~Lasgs-dd-----~I~IwDl~t~~~i~~--l~~~~~~I~s  720 (784)
                         .++..||..+.+-..  .+........ ++. -++.+.+.|+ ++     +|..||..+.+....  .......+..
T Consensus       441 ~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~  518 (571)
T KOG4441|consen  441 NCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGV  518 (571)
T ss_pred             cccceEEEEcCCCCceeecCCcccccccce-EEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccE
Confidence               457788887764322  2221111112 222 2455555555 32     588899887654322  2222222222


Q ss_pred             EEEecCCCEEEEEECCC-----eEEEEECCCCceE
Q 047260          721 CVFHPSYSTLLVVGGIS-----SLELWNMAENKSM  750 (784)
Q Consensus       721 l~fspdg~~L~s~s~dg-----~I~Iwdl~~~~~~  750 (784)
                      +.  -++...++|+.||     +|..||..+++-.
T Consensus       519 ~~--~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~  551 (571)
T KOG4441|consen  519 VV--LGGKLYAVGGFDGNNNLNTVECYDPETDTWT  551 (571)
T ss_pred             EE--ECCEEEEEecccCccccceeEEcCCCCCcee
Confidence            22  2445566676664     6888887776654

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.15  E-value=0.26  Score=44.64  Aligned_cols=99  Identities=13%  Similarity=0.209  Sum_probs=65.0

Q ss_pred             eEEEEE---cCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEe
Q 047260          595 IMSLDF---HPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQ  671 (784)
Q Consensus       595 V~sl~~---sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~  671 (784)
                      |+++++   ..++..-|++|+.|..|++|+-+...........++.++-... ..++.+..+|+|-+|+-.  ..+..++
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlWRiK   78 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLWRIK   78 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceeeeec
Confidence            445544   4566678899999999999998765555555677777776665 678999999999999863  3333444


Q ss_pred             CCCCCEEEEEEcC-CC----CEEEEEeCCeE
Q 047260          672 GHAELVNYICWDT-NG----DYLASVSQNLV  697 (784)
Q Consensus       672 ~h~~~V~sl~~sp-dg----~~Lasgsdd~I  697 (784)
                      . +..+.++++.. ++    .+++.-+++.|
T Consensus        79 S-K~~~~~~~~~D~~gdG~~eLI~GwsnGkv  108 (111)
T PF14783_consen   79 S-KNQVTSMAFYDINGDGVPELIVGWSNGKV  108 (111)
T ss_pred             c-CCCeEEEEEEcCCCCCceEEEEEecCCeE
Confidence            2 33355555433 33    24444445554

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.14  E-value=0.0078  Score=60.67  Aligned_cols=137  Identities=12%  Similarity=0.057  Sum_probs=74.5

Q ss_pred             EEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCee----EEeecCCeeE-
Q 047260          563 QLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLC----THITKGGTAQ-  637 (784)
Q Consensus       563 ~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~----~~~~~~~v~~-  637 (784)
                      .+...+.||.|+-++++..+...+.-..|...-.-    +....-+++|..+|.|++|..+..-.    .......+.+ 
T Consensus        32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v----~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~  107 (238)
T KOG2444|consen   32 LLRATSADGLVRERKVRKHKESCRSERFIDEGQRV----VTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLG  107 (238)
T ss_pred             hhccccCCcccccchhhhhhhhhhhhhhhhcceee----cccCceEEeecccceEEEecCCccchHHHhhhcccccceec
Confidence            34445678888888876544322222222222111    22233577788899999998873211    1111122222 


Q ss_pred             EEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCC-CCEEEEEEcCCCCEEEEE--eCC-eEEEEeCC
Q 047260          638 VRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHA-ELVNYICWDTNGDYLASV--SQN-LVKVWSMA  703 (784)
Q Consensus       638 v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~-~~V~sl~~spdg~~Lasg--sdd-~I~IwDl~  703 (784)
                      |....++.+.++++.+|.|+.|++.-.+.+-....|. .++..+.....+++|+..  +.+ .++.|++.
T Consensus       108 Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  108 IPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             cccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence            2233344577888889999999998887776666566 344444444444444443  222 45555543

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.13  E-value=2.6  Score=45.56  Aligned_cols=267  Identities=10%  Similarity=0.047  Sum_probs=121.4

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCC--C---CCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCC
Q 047260          507 NSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPED--H---KSVVTDVRFRPNSSQLATASVDKSVRLWDAANP  581 (784)
Q Consensus       507 ~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~--h---~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~  581 (784)
                      ...+.+|.|..+..-+++| ..+.| +-..+.++.-.....  .   .-...+|.|..+ ..++ ++..+. .+...+.+
T Consensus        16 ~~~l~dV~F~d~~~G~~VG-~~g~i-l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~i-vG~~g~-ll~T~DgG   90 (302)
T PF14870_consen   16 DKPLLDVAFVDPNHGWAVG-AYGTI-LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWI-VGEPGL-LLHTTDGG   90 (302)
T ss_dssp             SS-EEEEEESSSS-EEEEE-TTTEE-EEESSTTSS-EE-----S-----EEEEEEEETT-EEEE-EEETTE-EEEESSTT
T ss_pred             CCceEEEEEecCCEEEEEe-cCCEE-EEECCCCccccccccCCCccceeeEEEEEecCC-ceEE-EcCCce-EEEecCCC
Confidence            4479999999555555554 45543 222232322221111  1   123567777643 3444 445553 33333333


Q ss_pred             cceeeec--cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC--ee-EEeecCCeeEEEEecCCCEEEEEECCCcE
Q 047260          582 NFCSQAY--TGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPF--LC-THITKGGTAQVRFQPRIGQLLAAASDKVV  656 (784)
Q Consensus       582 ~~~~~~~--~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~--~~-~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I  656 (784)
                      +.-.+..  ..-......+....++. .+++ +..|.|+.-.-...  +. .....+.+..+..++++.+++++.....+
T Consensus        91 ~tW~~v~l~~~lpgs~~~i~~l~~~~-~~l~-~~~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~  168 (302)
T PF14870_consen   91 KTWERVPLSSKLPGSPFGITALGDGS-AELA-GDRGAIYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFY  168 (302)
T ss_dssp             SS-EE----TT-SS-EEEEEEEETTE-EEEE-ETT--EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSEE
T ss_pred             CCcEEeecCCCCCCCeeEEEEcCCCc-EEEE-cCCCcEEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccEE
Confidence            3222211  11223334444443332 3333 33454433222111  11 12223567777788998877777665666


Q ss_pred             EEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeC-CCCceEEE----eccCCCceEEEEEecCCCEEE
Q 047260          657 SIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSM-ASGECIQE----LSSNGNQFHSCVFHPSYSTLL  731 (784)
Q Consensus       657 ~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl-~t~~~i~~----l~~~~~~I~sl~fspdg~~L~  731 (784)
                      .-||--...-...-......|..+.|.|++.+.+.+..+.|++=+. ...+.-..    +......+..++|.+++...+
T Consensus       169 ~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa  248 (302)
T PF14870_consen  169 SSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWA  248 (302)
T ss_dssp             EEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEE
T ss_pred             EEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEE
Confidence            6777543222222223567899999999999888776668887772 22222111    112334478999998876444


Q ss_pred             EEECCCeEEEEECCCCceEEec----ccCCceEEEEEeCCCCEEEEEECCCcEEEe
Q 047260          732 VVGGISSLELWNMAENKSMTIA----AHENIISALAQSPVTGMVASASHDSSVKLW  783 (784)
Q Consensus       732 s~s~dg~I~Iwdl~~~~~~~~~----~h~~~V~slafspdg~~LaSgs~DG~V~IW  783 (784)
                       ++..|.| +...+.++.-...    .-...++.|.|..+.+-+| .+.||.|.-|
T Consensus       249 -~gg~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~-lG~~G~ll~~  301 (302)
T PF14870_consen  249 -VGGSGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV-LGQDGVLLRY  301 (302)
T ss_dssp             -EESTT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE-E-STTEEEEE
T ss_pred             -EeCCccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEE-ECCCcEEEEe
Confidence             5555544 4455666544222    2345688888886655555 4578887665

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=96.01  E-value=2.7  Score=44.77  Aligned_cols=215  Identities=12%  Similarity=0.098  Sum_probs=123.8

Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEECC-------CCceeeecCC-----CCCCeEEEEEccCCC------------EEE
Q 047260          510 VTCCHFSSDGKLLASSGHDRKVVLWNMD-------TLQTESTPED-----HKSVVTDVRFRPNSS------------QLA  565 (784)
Q Consensus       510 V~~l~fspdg~~Lasgs~Dg~I~IWd~~-------t~~~~~~l~~-----h~~~It~i~fspdg~------------~La  565 (784)
                      -+.|+|+|.+.+-++....+...+||..       ...++..+..     .....+.+.|+....            .++
T Consensus        25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi  104 (336)
T TIGR03118        25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL  104 (336)
T ss_pred             cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence            5779999999888888888999999986       1122333331     234678888875332            367


Q ss_pred             EEeCCCeEEEEcCCCCcc----eeeecc-CCCCCe-EEEEEcC--CCCcEEEEEeCCCeEEEEeCCCCeeEE--eecCCe
Q 047260          566 TASVDKSVRLWDAANPNF----CSQAYT-GHSSPI-MSLDFHP--KKTDLFCFCDNDNEIQYWSINPFLCTH--ITKGGT  635 (784)
Q Consensus       566 tgs~Dg~I~IWdl~~~~~----~~~~~~-~h~~~V-~sl~~sp--~~~~ll~sgs~dg~I~iwDl~~~~~~~--~~~~~v  635 (784)
                      .+++||+|.-|.-.-...    ....+. .....| ..+++..  .+..++++--..++|.+||-.-.+...  .+..+-
T Consensus       105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~  184 (336)
T TIGR03118       105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPA  184 (336)
T ss_pred             EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCC
Confidence            889999999998532221    111111 112333 3445443  355566666678999999865222110  111110


Q ss_pred             ----------------eEEEE---ecCCCEEEEEECCCcEEEEECCCCeEEEEEe--CCCCCEEEEEEcC------CCCE
Q 047260          636 ----------------AQVRF---QPRIGQLLAAASDKVVSIFDIETDRQTHSLQ--GHAELVNYICWDT------NGDY  688 (784)
Q Consensus       636 ----------------~~v~f---sp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~--~h~~~V~sl~~sp------dg~~  688 (784)
                                      .-|.|   .++...-+.+..-|.|-+||+. +..++.+.  +.-..-..|+..|      .|.+
T Consensus       185 iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~l  263 (336)
T TIGR03118       185 LPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSGAL  263 (336)
T ss_pred             CCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCCCe
Confidence                            00111   1122222223334789999986 66666663  2223445566654      4666


Q ss_pred             EEEEe-CCeEEEEeCCCCceEEEeccCCC------ceEEEEEec
Q 047260          689 LASVS-QNLVKVWSMASGECIQELSSNGN------QFHSCVFHP  725 (784)
Q Consensus       689 Lasgs-dd~I~IwDl~t~~~i~~l~~~~~------~I~sl~fsp  725 (784)
                      |+.-- |++|.+||..+++.+..+....+      .++.+.|..
T Consensus       264 LVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn  307 (336)
T TIGR03118       264 LVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN  307 (336)
T ss_pred             EEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence            66544 66999999999998887765433      235555544

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.01  E-value=2.5  Score=44.39  Aligned_cols=175  Identities=7%  Similarity=0.008  Sum_probs=105.9

Q ss_pred             eEEEEEcCCCCcEEEEEeCCC--eEEEEeCCCCeeEEeec--CCe--eEEEEecCCCEEEEEE-CCCcEEEEECCCCeEE
Q 047260          595 IMSLDFHPKKTDLFCFCDNDN--EIQYWSINPFLCTHITK--GGT--AQVRFQPRIGQLLAAA-SDKVVSIFDIETDRQT  667 (784)
Q Consensus       595 V~sl~~sp~~~~ll~sgs~dg--~I~iwDl~~~~~~~~~~--~~v--~~v~fsp~~~~Ll~~s-~Dg~I~IwDl~t~~~i  667 (784)
                      ...+.|..++. ++-+.+.-|  .|+.+|+.+++......  ...  ..++..  ++.|+.-+ .++...+||..+.+.+
T Consensus        47 TQGL~~~~~g~-LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~  123 (264)
T PF05096_consen   47 TQGLEFLDDGT-LYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKI  123 (264)
T ss_dssp             EEEEEEEETTE-EEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEE
T ss_pred             CccEEecCCCE-EEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceEE
Confidence            45677755554 666666655  79999999887665443  222  223333  34555444 4899999999999998


Q ss_pred             EEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEEEeccC-----CCceEEEEEecCCCEEEEEECCCeEEEE
Q 047260          668 HSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELSSN-----GNQFHSCVFHPSYSTLLVVGGISSLELW  742 (784)
Q Consensus       668 ~~l~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~~l~~~-----~~~I~sl~fspdg~~L~s~s~dg~I~Iw  742 (784)
                      ..+.- .+.=..++. .+..++++-+.+.|.++|..+.+.+.++...     -..++.+.|. +|...+=.-....|...
T Consensus       124 ~~~~y-~~EGWGLt~-dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~I  200 (264)
T PF05096_consen  124 GTFPY-PGEGWGLTS-DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRI  200 (264)
T ss_dssp             EEEE--SSS--EEEE-CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEE
T ss_pred             EEEec-CCcceEEEc-CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEE
Confidence            88863 345566663 2334455545569999999988877766532     2245667776 44444444445678888


Q ss_pred             ECCCCceEEecc-------------c---CCceEEEEEeCCCCEEEEEE
Q 047260          743 NMAENKSMTIAA-------------H---ENIISALAQSPVTGMVASAS  775 (784)
Q Consensus       743 dl~~~~~~~~~~-------------h---~~~V~slafspdg~~LaSgs  775 (784)
                      |..+|++.....             +   .+..+.|+|.|..+.|...+
T Consensus       201 dp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  201 DPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             ETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             eCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            999988763210             1   35689999998877555444

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=95.94  E-value=0.4  Score=56.60  Aligned_cols=214  Identities=13%  Similarity=0.068  Sum_probs=110.8

Q ss_pred             CCEEEEEeCC------CeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCC------CeEEEEeCCCCeeE
Q 047260          561 SSQLATASVD------KSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDND------NEIQYWSINPFLCT  628 (784)
Q Consensus       561 g~~Latgs~D------g~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~d------g~I~iwDl~~~~~~  628 (784)
                      +.+++.|+.+      ..|..||..++......-......-.++++..+  .++++|+.|      ..+..||.+...-.
T Consensus       285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~--~lYv~GG~~~~~~~l~~ve~YD~~~~~W~  362 (571)
T KOG4441|consen  285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNG--KLYVVGGYDSGSDRLSSVERYDPRTNQWT  362 (571)
T ss_pred             CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECC--EEEEEccccCCCcccceEEEecCCCCcee
Confidence            4455666665      367788888764322222222233444555433  588888888      35777888765533


Q ss_pred             Eeec--CCeeEEEEe-cCCCEEEEEECCC-----cEEEEECCCCeEEEEEeCCCCCEEEEE-EcCCCCEEEEEe-C----
Q 047260          629 HITK--GGTAQVRFQ-PRIGQLLAAASDK-----VVSIFDIETDRQTHSLQGHAELVNYIC-WDTNGDYLASVS-Q----  694 (784)
Q Consensus       629 ~~~~--~~v~~v~fs-p~~~~Ll~~s~Dg-----~I~IwDl~t~~~i~~l~~h~~~V~sl~-~spdg~~Lasgs-d----  694 (784)
                      ....  ..-..+... -+|...++|+.||     +|..||.++.+-...-. ......... ..-+|++.++|+ +    
T Consensus       363 ~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~gv~~~~g~iYi~GG~~~~~~  441 (571)
T KOG4441|consen  363 PVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGHGVAVLGGKLYIIGGGDGSSN  441 (571)
T ss_pred             ccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCC-CCcceeeeEEEEECCEEEEEcCcCCCcc
Confidence            3221  222222222 2445566677664     47778877654221111 111222221 123566666665 2    


Q ss_pred             --CeEEEEeCCCCceEE--EeccCCCceEEEEEecCCCEEEEEECCC-----eEEEEECCCCceEEecccCCceEEEEE-
Q 047260          695 --NLVKVWSMASGECIQ--ELSSNGNQFHSCVFHPSYSTLLVVGGIS-----SLELWNMAENKSMTIAAHENIISALAQ-  764 (784)
Q Consensus       695 --d~I~IwDl~t~~~i~--~l~~~~~~I~sl~fspdg~~L~s~s~dg-----~I~Iwdl~~~~~~~~~~h~~~V~slaf-  764 (784)
                        +++..||..+.+...  .+........ ++. -++...++||.|+     +|..||..+.+...+..-......+.. 
T Consensus       442 ~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~  519 (571)
T KOG4441|consen  442 CLNSVECYDPETNTWTLIAPMNTRRSGFG-VAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVV  519 (571)
T ss_pred             ccceEEEEcCCCCceeecCCcccccccce-EEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEE
Confidence              268899988765432  2222222222 222 2445566666554     488899998877654322222222211 


Q ss_pred             eCCCCEEEEEECCCc
Q 047260          765 SPVTGMVASASHDSS  779 (784)
Q Consensus       765 spdg~~LaSgs~DG~  779 (784)
                      .-++.+.++|+.||.
T Consensus       520 ~~~~~ly~vGG~~~~  534 (571)
T KOG4441|consen  520 VLGGKLYAVGGFDGN  534 (571)
T ss_pred             EECCEEEEEecccCc
Confidence            224667788888874

>PHA02713 hypothetical protein; Provisional

Probab=95.92  E-value=0.6  Score=55.10  Aligned_cols=204  Identities=5%  Similarity=-0.009  Sum_probs=95.7

Q ss_pred             eEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCC------CeEEEEeCCCCeeEEeec--CCe-eEEEEec
Q 047260          572 SVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDND------NEIQYWSINPFLCTHITK--GGT-AQVRFQP  642 (784)
Q Consensus       572 ~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~d------g~I~iwDl~~~~~~~~~~--~~v-~~v~fsp  642 (784)
                      .+..||..+..............-.+++..  ++.+++.|+.+      ..+..||..+........  .+. ......-
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l--~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~  350 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHIINYASAIV--DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI  350 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCccccceEEEEE--CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE
Confidence            467788776552211111111111222322  34477777643      347788887654332221  111 1112233


Q ss_pred             CCCEEEEEECCC-----cEEEEECCCCeEEE--EEeCCCCCEEEEEEcCCCCEEEEEeC---------------------
Q 047260          643 RIGQLLAAASDK-----VVSIFDIETDRQTH--SLQGHAELVNYICWDTNGDYLASVSQ---------------------  694 (784)
Q Consensus       643 ~~~~Ll~~s~Dg-----~I~IwDl~t~~~i~--~l~~h~~~V~sl~~spdg~~Lasgsd---------------------  694 (784)
                      ++..+++|+.++     .+..||..+.+-..  .+.........+.  -+|++.+.|+.                     
T Consensus       351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~  428 (557)
T PHA02713        351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT  428 (557)
T ss_pred             CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccc
Confidence            455566666543     48889988753221  1111111111222  25666666552                     


Q ss_pred             ---CeEEEEeCCCCceE--EEeccCCCceEEEEEecCCCEEEEEECC------CeEEEEECCC-CceEEec---ccCCce
Q 047260          695 ---NLVKVWSMASGECI--QELSSNGNQFHSCVFHPSYSTLLVVGGI------SSLELWNMAE-NKSMTIA---AHENII  759 (784)
Q Consensus       695 ---d~I~IwDl~t~~~i--~~l~~~~~~I~sl~fspdg~~L~s~s~d------g~I~Iwdl~~-~~~~~~~---~h~~~V  759 (784)
                         +.+..||..+.+-.  ..+...  .....+..-++...++|+.+      ..+..||..+ ++-..+.   ......
T Consensus       429 ~~~~~ve~YDP~td~W~~v~~m~~~--r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~  506 (557)
T PHA02713        429 HSSNKVIRYDTVNNIWETLPNFWTG--TIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSAL  506 (557)
T ss_pred             cccceEEEECCCCCeEeecCCCCcc--cccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccc
Confidence               24777887765432  222111  11222223345555555543      2478899887 5543222   222222


Q ss_pred             EEEEEeCCCCEEEEEECCC--cEEEe
Q 047260          760 SALAQSPVTGMVASASHDS--SVKLW  783 (784)
Q Consensus       760 ~slafspdg~~LaSgs~DG--~V~IW  783 (784)
                      ..+.  -++++.++||.||  .|-.|
T Consensus       507 ~~~~--~~~~iyv~Gg~~~~~~~e~y  530 (557)
T PHA02713        507 HTIL--HDNTIMMLHCYESYMLQDTF  530 (557)
T ss_pred             eeEE--ECCEEEEEeeecceeehhhc
Confidence            2222  2678888999888  44444

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=95.92  E-value=1.5  Score=53.33  Aligned_cols=224  Identities=9%  Similarity=0.053  Sum_probs=117.0

Q ss_pred             CCEEEEEeCCCeEEEEECCCCceeeecCCCCCC--------eEEEEEcc----------------CCCEEEEEeCCCeEE
Q 047260          519 GKLLASSGHDRKVVLWNMDTLQTESTPEDHKSV--------VTDVRFRP----------------NSSQLATASVDKSVR  574 (784)
Q Consensus       519 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~--------It~i~fsp----------------dg~~Latgs~Dg~I~  574 (784)
                      +..|++++.++.|.-.|..+++.+..+......        +..+.+..                .+..|+.++.|+.|.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            456777777888888999888888776532211        12233321                344788888999999


Q ss_pred             EEcCCCCcceeeeccCCCCCeE-------------EEEEcC--CCCcEEEEEeC----------CCeEEEEeCCCCeeEE
Q 047260          575 LWDAANPNFCSQAYTGHSSPIM-------------SLDFHP--KKTDLFCFCDN----------DNEIQYWSINPFLCTH  629 (784)
Q Consensus       575 IWdl~~~~~~~~~~~~h~~~V~-------------sl~~sp--~~~~ll~sgs~----------dg~I~iwDl~~~~~~~  629 (784)
                      -.|.++++.+.. +. ..+.|.             .+.-.|  .+. .+++++.          +|.|+-+|.++++.+-
T Consensus       274 ALDA~TGk~~W~-fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g-~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W  350 (764)
T TIGR03074       274 ALDADTGKLCED-FG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGT-TVVIGGRVADNYSTDEPSGVIRAFDVNTGALVW  350 (764)
T ss_pred             EEECCCCCEEEE-ec-CCCceeeecccCcCCCcccccccCCEEECC-EEEEEecccccccccCCCcEEEEEECCCCcEee
Confidence            999999885533 21 111110             011111  122 3444432          5889999999888876


Q ss_pred             eecCCeeEEE-EecCCCEEEEEECCC-cEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCC-EEEEEeCCeEEEEeCCCCc
Q 047260          630 ITKGGTAQVR-FQPRIGQLLAAASDK-VVSIFDIETDRQTHSLQGHAELVNYICWDTNGD-YLASVSQNLVKVWSMASGE  706 (784)
Q Consensus       630 ~~~~~v~~v~-fsp~~~~Ll~~s~Dg-~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~-~Lasgsdd~I~IwDl~t~~  706 (784)
                      .+........ ..+.+.....++... ....+|.+.+....-. +...+    .+....+ ...-...+.|.-.|.++|+
T Consensus       351 ~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~pt-Gn~~p----d~~g~~r~~~~n~y~~slvALD~~TGk  425 (764)
T TIGR03074       351 AWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPM-GNQTP----DQWGGDRTPADEKYSSSLVALDATTGK  425 (764)
T ss_pred             EEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeC-CCccc----cccCCccccCcccccceEEEEeCCCCc
Confidence            6542100000 001222111111111 3444555544332211 11110    0100000 0000113468888999998


Q ss_pred             eEEEeccCCCceEE---------EEEec-CCC---EEEEEECCCeEEEEECCCCceE
Q 047260          707 CIQELSSNGNQFHS---------CVFHP-SYS---TLLVVGGISSLELWNMAENKSM  750 (784)
Q Consensus       707 ~i~~l~~~~~~I~s---------l~fsp-dg~---~L~s~s~dg~I~Iwdl~~~~~~  750 (784)
                      .+..+......+.+         +.+.. +++   .++.++.+|.++++|.++++.+
T Consensus       426 ~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l  482 (764)
T TIGR03074       426 ERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPI  482 (764)
T ss_pred             eEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEE
Confidence            88777542222111         12222 453   6888999999999999999876

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=95.74  E-value=0.013  Score=68.77  Aligned_cols=173  Identities=15%  Similarity=0.148  Sum_probs=108.5

Q ss_pred             eecCCCceEEEEEcC-CCCEEEEEeCCCeEEEEECC--CCceeeec-----CCCCCCeEEEEEcc---CCCEEEEEeCCC
Q 047260          503 IRSRNSKVTCCHFSS-DGKLLASSGHDRKVVLWNMD--TLQTESTP-----EDHKSVVTDVRFRP---NSSQLATASVDK  571 (784)
Q Consensus       503 l~~H~~~V~~l~fsp-dg~~Lasgs~Dg~I~IWd~~--t~~~~~~l-----~~h~~~It~i~fsp---dg~~Latgs~Dg  571 (784)
                      +++..+.|-.+.|.. +...++  -.-|.+.|||++  .|+....+     ......+.-|.|+|   +.-++..+-.++
T Consensus       128 ~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~  205 (1283)
T KOG1916|consen  128 AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGG  205 (1283)
T ss_pred             HhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCC
Confidence            466778888888854 222232  334678899886  33332222     22334455666666   566777777889


Q ss_pred             eEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCCeeEEEEecCCCEEEEEE
Q 047260          572 SVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAA  651 (784)
Q Consensus       572 ~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v~~v~fsp~~~~Ll~~s  651 (784)
                      +|++..+....  ...+.+|...+..++|...|-..+..                             ++|||..+++++
T Consensus       206 ~i~lL~~~ra~--~~l~rsHs~~~~d~a~~~~g~~~l~~-----------------------------lSpDGtv~a~a~  254 (1283)
T KOG1916|consen  206 EIRLLNINRAL--RSLFRSHSQRVTDMAFFAEGVLKLAS-----------------------------LSPDGTVFAWAI  254 (1283)
T ss_pred             ceeEeeechHH--HHHHHhcCCCcccHHHHhhchhhhee-----------------------------eCCCCcEEEEee
Confidence            99988877543  36677799999998887665433322                             577888888888


Q ss_pred             CCCcEEEEEC-----CCCeEEEEEeCCC-CCEEEEEEcCC---------CCEEEEEeC-C-eEEEEeCCCCceE
Q 047260          652 SDKVVSIFDI-----ETDRQTHSLQGHA-ELVNYICWDTN---------GDYLASVSQ-N-LVKVWSMASGECI  708 (784)
Q Consensus       652 ~Dg~I~IwDl-----~t~~~i~~l~~h~-~~V~sl~~spd---------g~~Lasgsd-d-~I~IwDl~t~~~i  708 (784)
                      .||.++.|.+     ...++++.++.|. .+-.|.-++..         -.++++++| + .+++|.....+|+
T Consensus       255 ~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  255 SDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             cCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence            8887776654     3345566666666 33333333321         124455553 3 8999998888776

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=95.72  E-value=4.5  Score=45.05  Aligned_cols=192  Identities=11%  Similarity=0.038  Sum_probs=105.7

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCceeeecCCC--CCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCC-CC
Q 047260          518 DGKLLASSGHDRKVVLWNMDTLQTESTPEDH--KSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHS-SP  594 (784)
Q Consensus       518 dg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h--~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~-~~  594 (784)
                      +++ ++++..+|.|.-.|.++++.+.....-  ...+.+-.+..+|+ |+.++.++.+..+|.+++... -.+.... ..
T Consensus        68 dg~-v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~-W~~~~~~~~~  144 (370)
T COG1520          68 DGT-VYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLV-WSRNVGGSPY  144 (370)
T ss_pred             CCe-EEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEE-EEEecCCCeE
Confidence            454 444578888888898888866544322  12333333333665 788888998889998776633 2222222 11


Q ss_pred             eEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCCe-eEE--E--EecCCCEEEEEEC--CCcEEEEECCCCeEE
Q 047260          595 IMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGT-AQV--R--FQPRIGQLLAAAS--DKVVSIFDIETDRQT  667 (784)
Q Consensus       595 V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v-~~v--~--fsp~~~~Ll~~s~--Dg~I~IwDl~t~~~i  667 (784)
                      +..-.+..++  .+..++.++.+...|..++.......... ...  .  .......++++..  ++.+.-+|.+++...
T Consensus       145 ~~~~~v~~~~--~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~  222 (370)
T COG1520         145 YASPPVVGDG--TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTLK  222 (370)
T ss_pred             EecCcEEcCc--EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCcEe
Confidence            1111222222  34444467888888888776655433221 111  1  1123345566655  667888888888777


Q ss_pred             EEEeCC----CCCE--E-EE---EEcCCCCEEEEEeCCeEEEEeCCCCceEEEeccC
Q 047260          668 HSLQGH----AELV--N-YI---CWDTNGDYLASVSQNLVKVWSMASGECIQELSSN  714 (784)
Q Consensus       668 ~~l~~h----~~~V--~-sl---~~spdg~~Lasgsdd~I~IwDl~t~~~i~~l~~~  714 (784)
                      ...+.+    ...+  . .+   ...-++..++....+.+...|..+++.+.++...
T Consensus       223 w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~  279 (370)
T COG1520         223 WSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG  279 (370)
T ss_pred             eeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence            664311    1111  0 00   1111233333334557889999999998888763

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.72  E-value=0.24  Score=55.62  Aligned_cols=141  Identities=12%  Similarity=0.080  Sum_probs=95.9

Q ss_pred             CCCcEEEEEeCCCeEEEEeCCCCeeEEeec--CCeeEEEEecCCC-------EEEEEECCCcEEEEECCCCeE--EEEEe
Q 047260          603 KKTDLFCFCDNDNEIQYWSINPFLCTHITK--GGTAQVRFQPRIG-------QLLAAASDKVVSIFDIETDRQ--THSLQ  671 (784)
Q Consensus       603 ~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~--~~v~~v~fsp~~~-------~Ll~~s~Dg~I~IwDl~t~~~--i~~l~  671 (784)
                      +.+.++.++.....|+-.|++.++.+...+  ..|.-+.+.|+..       .-++|-++..|+-||.+-...  +....
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q  423 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQ  423 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeee
Confidence            445556666677789999999988876654  5567777777653       346777899999999985322  22222


Q ss_pred             C----CCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEEC
Q 047260          672 G----HAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNM  744 (784)
Q Consensus       672 ~----h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl  744 (784)
                      +    ......|++-..+|.+++.+-+|.|++||--.......+.+-+.+|..+..+.+|++|++.+. ..|.+.++
T Consensus       424 ~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~-tyLlLi~t  499 (644)
T KOG2395|consen  424 SKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCK-TYLLLIDT  499 (644)
T ss_pred             ccccccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecc-cEEEEEEE
Confidence            2    233566777666776555555679999997433444567788899999999999997766554 45555553

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.71  E-value=1.8  Score=45.68  Aligned_cols=194  Identities=11%  Similarity=0.137  Sum_probs=111.7

Q ss_pred             CCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC
Q 047260          546 EDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPF  625 (784)
Q Consensus       546 ~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~  625 (784)
                      .+-...|.++.|+|+.+.|++......-.||=..++..+...-...-.....|.+..++. ++++-..+..+.++.++..
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~-fvi~dER~~~l~~~~vd~~  160 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQ-FVIVDERDRALYLFTVDAD  160 (316)
T ss_pred             ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCE-EEEEehhcceEEEEEEcCC
Confidence            344556999999999999988887777777755555533322222233455677765554 5556667888888877643


Q ss_pred             eeEEee-------------cCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeE---EEEEeCC-------CCCEEEEEE
Q 047260          626 LCTHIT-------------KGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQ---THSLQGH-------AELVNYICW  682 (784)
Q Consensus       626 ~~~~~~-------------~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~---i~~l~~h-------~~~V~sl~~  682 (784)
                      ..+...             ..+...++|.|....|+++-+..-+.||.+.....   ++....+       -..|.++.|
T Consensus       161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~  240 (316)
T COG3204         161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF  240 (316)
T ss_pred             ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence            221111             23456789999999999999988888887664321   1111111       124666778


Q ss_pred             cCCCCE-EEEEeCC-eEEEEeCCCCceEEEeccCC---------CceEEEEEecCCCEEEEEECCCeEEEE
Q 047260          683 DTNGDY-LASVSQN-LVKVWSMASGECIQELSSNG---------NQFHSCVFHPSYSTLLVVGGISSLELW  742 (784)
Q Consensus       683 spdg~~-Lasgsdd-~I~IwDl~t~~~i~~l~~~~---------~~I~sl~fspdg~~L~s~s~dg~I~Iw  742 (784)
                      ++.... |+-+.+. .|.-.|.. |..+..+.-+.         ...-.++..++|. |+.++.-+-.+.|
T Consensus       241 ~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~-lYIvSEPnlfy~F  309 (316)
T COG3204         241 NAITNSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGN-LYIVSEPNLFYRF  309 (316)
T ss_pred             cCCCCcEEEEecCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcceeEECCCCC-EEEEecCCcceec
Confidence            765444 4444444 55555654 33344332211         1124556665554 4455544444333

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=95.59  E-value=3  Score=46.43  Aligned_cols=141  Identities=7%  Similarity=-0.014  Sum_probs=77.4

Q ss_pred             CCeEEEEEccCCCEEEEEe-----------CCC-eEEEEcCCCC--cc-eeeeccCCCCCeEEEEEcCCCCcEEEEEeCC
Q 047260          550 SVVTDVRFRPNSSQLATAS-----------VDK-SVRLWDAANP--NF-CSQAYTGHSSPIMSLDFHPKKTDLFCFCDND  614 (784)
Q Consensus       550 ~~It~i~fspdg~~Latgs-----------~Dg-~I~IWdl~~~--~~-~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~d  614 (784)
                      .....|+|.++|+++++-.           ..+ .|.+++-.++  .. ....+...-.....+++.+++  ++++ +..
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~-~~~   90 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVA-TPP   90 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEe-CCC
Confidence            3456788888888776643           123 6666654322  21 123333333456888998877  5554 334


Q ss_pred             CeEEEEeCCC-------CeeE-Eeec-------CCeeEEEEecCCCEEEEEECC-------------------CcEEEEE
Q 047260          615 NEIQYWSINP-------FLCT-HITK-------GGTAQVRFQPRIGQLLAAASD-------------------KVVSIFD  660 (784)
Q Consensus       615 g~I~iwDl~~-------~~~~-~~~~-------~~v~~v~fsp~~~~Ll~~s~D-------------------g~I~IwD  660 (784)
                      ..+++.|.+.       .+.+ ..+.       .....++|.|++..+++.+..                   +.|.-+|
T Consensus        91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~  170 (367)
T TIGR02604        91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN  170 (367)
T ss_pred             eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence            3333445532       1111 1121       124578899998776655521                   4456666


Q ss_pred             CCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeC
Q 047260          661 IETDRQTHSLQGHAELVNYICWDTNGDYLASVSQ  694 (784)
Q Consensus       661 l~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsd  694 (784)
                      ...++.. .+.........++|+++|+++++-.+
T Consensus       171 pdg~~~e-~~a~G~rnp~Gl~~d~~G~l~~tdn~  203 (367)
T TIGR02604       171 PDGGKLR-VVAHGFQNPYGHSVDSWGDVFFCDND  203 (367)
T ss_pred             cCCCeEE-EEecCcCCCccceECCCCCEEEEccC
Confidence            6554432 22222234567999999998876543

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=95.45  E-value=1.8  Score=48.35  Aligned_cols=181  Identities=12%  Similarity=0.091  Sum_probs=93.5

Q ss_pred             CCcEEEEEeCCCeEEEEeCCC----CeeEEeec----------CCeeEEEEecCCCEEEEEEC------CCcEEEEECCC
Q 047260          604 KTDLFCFCDNDNEIQYWSINP----FLCTHITK----------GGTAQVRFQPRIGQLLAAAS------DKVVSIFDIET  663 (784)
Q Consensus       604 ~~~ll~sgs~dg~I~iwDl~~----~~~~~~~~----------~~v~~v~fsp~~~~Ll~~s~------Dg~I~IwDl~t  663 (784)
                      .+++++-|-..+.|+|+|+.+    .+..+.++          .....+..-|+|+.++++-.      .|.+.++|-++
T Consensus        87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~t  166 (461)
T PF05694_consen   87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGET  166 (461)
T ss_dssp             S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT
T ss_pred             CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcc
Confidence            445666666889999999873    33333333          12234556678878777643      36788999988


Q ss_pred             CeEEEEEeCCC---CCEEEEEEcCCCCEEEEEe--------------------CC-eEEEEeCCCCceEEEeccCCC--c
Q 047260          664 DRQTHSLQGHA---ELVNYICWDTNGDYLASVS--------------------QN-LVKVWSMASGECIQELSSNGN--Q  717 (784)
Q Consensus       664 ~~~i~~l~~h~---~~V~sl~~spdg~~Lasgs--------------------dd-~I~IwDl~t~~~i~~l~~~~~--~  717 (784)
                      .+.........   ..-..+-|.|..+.+++.+                    -+ ++.+||+.+.+.+.++.-...  .
T Consensus       167 f~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~  246 (461)
T PF05694_consen  167 FEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQM  246 (461)
T ss_dssp             --EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEE
T ss_pred             ccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCc
Confidence            87777766422   2445677888888888763                    13 899999999999999976543  3


Q ss_pred             eEEEEEe--cCCCEEEE-EECCCeEEEEEC-CCCc-----eEEecc-----------------cCCceEEEEEeCCCCEE
Q 047260          718 FHSCVFH--PSYSTLLV-VGGISSLELWNM-AENK-----SMTIAA-----------------HENIISALAQSPVTGMV  771 (784)
Q Consensus       718 I~sl~fs--pdg~~L~s-~s~dg~I~Iwdl-~~~~-----~~~~~~-----------------h~~~V~slafspdg~~L  771 (784)
                      ...+.|.  |+..+=++ +.-..+|..|-- ..++     .+.+..                 -..-|+.|..|.|+++|
T Consensus       247 pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfL  326 (461)
T PF05694_consen  247 PLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFL  326 (461)
T ss_dssp             EEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EE
T ss_pred             eEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEE
Confidence            4556654  55555333 334445555533 4432     122211                 13558999999999999


Q ss_pred             EEEEC-CCcEEEeC
Q 047260          772 ASASH-DSSVKLWK  784 (784)
Q Consensus       772 aSgs~-DG~V~IWd  784 (784)
                      +..+. +|.|+.||
T Consensus       327 Yvs~W~~GdvrqYD  340 (461)
T PF05694_consen  327 YVSNWLHGDVRQYD  340 (461)
T ss_dssp             EEEETTTTEEEEEE
T ss_pred             EEEcccCCcEEEEe
Confidence            88876 89999886

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=95.44  E-value=4.3  Score=42.93  Aligned_cols=266  Identities=10%  Similarity=0.037  Sum_probs=137.3

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCC--CCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcce
Q 047260          507 NSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPED--HKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFC  584 (784)
Q Consensus       507 ~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~--h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~  584 (784)
                      .+-+..+.++  +++...+..+.-++|.|+.+......+..  ..+--.++..  .|++..++..|.-+.+.|+.++...
T Consensus        86 ~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP  161 (370)
T COG5276          86 RDLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSP  161 (370)
T ss_pred             hhhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCc
Confidence            4456777776  45777777777799999986544333221  1133334444  5889999987777889999876533


Q ss_pred             e--eeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe---eEEee--cCCeeEEEEecCCCEEEEEECCCcEE
Q 047260          585 S--QAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFL---CTHIT--KGGTAQVRFQPRIGQLLAAASDKVVS  657 (784)
Q Consensus       585 ~--~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~---~~~~~--~~~v~~v~fsp~~~~Ll~~s~Dg~I~  657 (784)
                      .  ..+......-..++.+  |+ ....+..|+-+.+-|+....   .+...  ...+..+..+++  +.++.-.+--+.
T Consensus       162 ~lagrya~~~~d~~~v~IS--Gn-~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdn--r~y~vvy~egvl  236 (370)
T COG5276         162 QLAGRYALPGGDTHDVAIS--GN-YAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDN--RAYLVVYDEGVL  236 (370)
T ss_pred             eeeeeeccCCCCceeEEEe--cC-eEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCC--eeEEEEcccceE
Confidence            2  2222333334556665  33 44455678889999986432   22222  235556655554  444445555677


Q ss_pred             EEECCCCeEEEEEeC-CCCCEEEE-EEcCCCCEEEEEeCC-eEEEEeCCCCc---eEEEeccCCCceEEEEEecCCCEEE
Q 047260          658 IFDIETDRQTHSLQG-HAELVNYI-CWDTNGDYLASVSQN-LVKVWSMASGE---CIQELSSNGNQFHSCVFHPSYSTLL  731 (784)
Q Consensus       658 IwDl~t~~~i~~l~~-h~~~V~sl-~~spdg~~Lasgsdd-~I~IwDl~t~~---~i~~l~~~~~~I~sl~fspdg~~L~  731 (784)
                      +.|....+....+.. ....+.++ .+.-.+++......+ .+-+-|+.+..   ....+......-..+...  +.++.
T Consensus       237 ivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay--~~y~y  314 (370)
T COG5276         237 IVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAY--GNYNY  314 (370)
T ss_pred             EEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEEe--cCeeE
Confidence            788777664444322 11222222 122234444443322 44444544321   111222211122222222  22333


Q ss_pred             EEECCCeEEEEECCCCceE-EecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          732 VVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       732 s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      .+..+ ...+-+....+.+ ...+....+.+.+.+-+.+.+.+...++.+.||+
T Consensus       315 iadkn-~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~  367 (370)
T COG5276         315 IADKN-TGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIE  367 (370)
T ss_pred             eccCC-ceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEE
Confidence            33333 3444444443333 1112222334444444566888889999999986

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.42  E-value=2  Score=45.37  Aligned_cols=191  Identities=12%  Similarity=0.130  Sum_probs=117.1

Q ss_pred             eecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCC-CCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCC
Q 047260          503 IRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDH-KSVVTDVRFRPNSSQLATASVDKSVRLWDAANP  581 (784)
Q Consensus       503 l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h-~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~  581 (784)
                      +.+-+..|.++.|+|+.+.|++......-.||=..+|..+.++.-. -.....|.+..++.+.++--.++.+.++.++..
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~  160 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD  160 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence            3445556999999999998888887777777777778888877421 223456788878877777777888888877654


Q ss_pred             ccee---------eeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe-e--E----------EeecCCeeEEE
Q 047260          582 NFCS---------QAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFL-C--T----------HITKGGTAQVR  639 (784)
Q Consensus       582 ~~~~---------~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~-~--~----------~~~~~~v~~v~  639 (784)
                      ....         ............++|.|....+++ .-+..-+.||.++... .  .          ..+-..+..+.
T Consensus       161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~-aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~  239 (316)
T COG3204         161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFV-AKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE  239 (316)
T ss_pred             ccEEeccceEEeccccCCCCcCceeeecCCCCceEEE-EEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence            3211         111122556788999998875555 4445555555544211 1  1          11123456677


Q ss_pred             EecCCCEEEEEEC-CCcEEEEECCCCeEEEEEeCCC---------CCEEEEEEcCCCCEEEEEeCC
Q 047260          640 FQPRIGQLLAAAS-DKVVSIFDIETDRQTHSLQGHA---------ELVNYICWDTNGDYLASVSQN  695 (784)
Q Consensus       640 fsp~~~~Ll~~s~-Dg~I~IwDl~t~~~i~~l~~h~---------~~V~sl~~spdg~~Lasgsdd  695 (784)
                      |++..+.|++-+. ++.|...|.... ++..+.-+.         .....|+.+++|.+.+++.-+
T Consensus       240 ~~~~~~~LLVLS~ESr~l~Evd~~G~-~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSEPn  304 (316)
T COG3204         240 FNAITNSLLVLSDESRRLLEVDLSGE-VIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSEPN  304 (316)
T ss_pred             ecCCCCcEEEEecCCceEEEEecCCC-eeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEecCC
Confidence            8876666666555 677777776543 333322111         123456677777665555433

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=95.41  E-value=5.2  Score=49.16  Aligned_cols=174  Identities=14%  Similarity=0.190  Sum_probs=97.0

Q ss_pred             CCCCCeEEEEEc---c----CCCEEEEEeCCCeEEEEcCCCCcc--------------eeeecc---CCCCCeEEEEEcC
Q 047260          547 DHKSVVTDVRFR---P----NSSQLATASVDKSVRLWDAANPNF--------------CSQAYT---GHSSPIMSLDFHP  602 (784)
Q Consensus       547 ~h~~~It~i~fs---p----dg~~Latgs~Dg~I~IWdl~~~~~--------------~~~~~~---~h~~~V~sl~~sp  602 (784)
                      .-..+|..|+|.   .    ..++|++= ....+.|+...-.+.              ++..+.   -...+...++|+|
T Consensus        77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP  155 (765)
T PF10214_consen   77 DDGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP  155 (765)
T ss_pred             CCCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence            456788888888   2    22344443 445666666211110              111111   1123566777887


Q ss_pred             CCCcEEEEEeCCCeEEEEeCCCCeeEEeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEE
Q 047260          603 KKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICW  682 (784)
Q Consensus       603 ~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~  682 (784)
                      .....|++.+..|...|||+......   ...          ..-+.....|.| ++|..          .......|+|
T Consensus       156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~---~~~----------~~~~~~~~~gsi-~~d~~----------e~s~w~rI~W  211 (765)
T PF10214_consen  156 WDQRQFAIVDEKGNWSVWDIKGRPKR---KSS----------NLRLSRNISGSI-IFDPE----------ELSNWKRILW  211 (765)
T ss_pred             CccceEEEEeccCcEEEEEecccccc---CCc----------ceeeccCCCccc-cCCCc----------ccCcceeeEe
Confidence            77667777777888888887211100   000          111111222333 23322          1145567899


Q ss_pred             cCCCCEEEEEeCCeEEEEeCCCCceEE--EeccCCCceEEEEEecCCC-EEEEEECCCeEEEEECCC
Q 047260          683 DTNGDYLASVSQNLVKVWSMASGECIQ--ELSSNGNQFHSCVFHPSYS-TLLVVGGISSLELWNMAE  746 (784)
Q Consensus       683 spdg~~Lasgsdd~I~IwDl~t~~~i~--~l~~~~~~I~sl~fspdg~-~L~s~s~dg~I~Iwdl~~  746 (784)
                      .++-..|++++...+.++|+.+.....  ........|.++.-++... ++++- ....|...++..
T Consensus       212 ~~~~~~lLv~~r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL-Ts~eiiw~~~~~  277 (765)
T PF10214_consen  212 VSDSNRLLVCNRSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFIL-TSKEIIWLDVKS  277 (765)
T ss_pred             cCCCCEEEEEcCCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEE-ecCeEEEEEccC
Confidence            999889999988899999999875532  1223446788888887732 22222 335677777766

These proteins are found in fungi.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=95.20  E-value=4.2  Score=42.77  Aligned_cols=138  Identities=14%  Similarity=0.160  Sum_probs=87.0

Q ss_pred             CeEEEEEccCCCEEEEEe---CCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEe-CCCC-
Q 047260          551 VVTDVRFRPNSSQLATAS---VDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWS-INPF-  625 (784)
Q Consensus       551 ~It~i~fspdg~~Latgs---~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwD-l~~~-  625 (784)
                      .+.+.++++++..++...   ....+.++.....  ......+  ..+....|.+++. +.+....+...+++. .... 
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~--~~~~~~g--~~l~~PS~d~~g~-~W~v~~~~~~~~~~~~~~~g~   99 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP--VRPVLTG--GSLTRPSWDPDGW-VWTVDDGSGGVRVVRDSASGT   99 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc--ceeeccC--CccccccccCCCC-EEEEEcCCCceEEEEecCCCc
Confidence            688999999999887766   3345666655432  2222232  3678889999955 555555566656653 2221 


Q ss_pred             -eeE--Eeec--CCeeEEEEecCCCEEEEEEC---CCcEEEEECC---CC------eEEEEEeCCCCCEEEEEEcCCCCE
Q 047260          626 -LCT--HITK--GGTAQVRFQPRIGQLLAAAS---DKVVSIFDIE---TD------RQTHSLQGHAELVNYICWDTNGDY  688 (784)
Q Consensus       626 -~~~--~~~~--~~v~~v~fsp~~~~Ll~~s~---Dg~I~IwDl~---t~------~~i~~l~~h~~~V~sl~~spdg~~  688 (784)
                       ...  ....  +.|..+.++|+|..++....   ++.|.+--+.   .+      ..+.........+..+.|.+++.+
T Consensus       100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L  179 (253)
T PF10647_consen  100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTL  179 (253)
T ss_pred             ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEE
Confidence             111  1111  27899999999999887773   4777776543   22      111122233568899999999998


Q ss_pred             EEEEe
Q 047260          689 LASVS  693 (784)
Q Consensus       689 Lasgs  693 (784)
                      ++.+.
T Consensus       180 ~V~~~  184 (253)
T PF10647_consen  180 VVLGR  184 (253)
T ss_pred             EEEeC
Confidence            88776

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.16  E-value=0.18  Score=61.15  Aligned_cols=143  Identities=10%  Similarity=0.046  Sum_probs=96.0

Q ss_pred             CCeEEEEEccCCCEEEEE--eCCCeEEEEcCCCCccee----e------eccCCCCCeEEEEEcCCCCcEEEEEeCCCeE
Q 047260          550 SVVTDVRFRPNSSQLATA--SVDKSVRLWDAANPNFCS----Q------AYTGHSSPIMSLDFHPKKTDLFCFCDNDNEI  617 (784)
Q Consensus       550 ~~It~i~fspdg~~Latg--s~Dg~I~IWdl~~~~~~~----~------~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I  617 (784)
                      -.|..+...+|+...++.  +.+-.|..||+++-....    .      +......-+.++.|+|.-...++.+..|+.|
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl  180 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL  180 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence            345566666676655444  334478899987532111    1      1112233466889999877778888899999


Q ss_pred             EEEeCCCCe--eE-EeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeC----CCCCEEEEEEcCCCCEEE
Q 047260          618 QYWSINPFL--CT-HITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQG----HAELVNYICWDTNGDYLA  690 (784)
Q Consensus       618 ~iwDl~~~~--~~-~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~----h~~~V~sl~~spdg~~La  690 (784)
                      ++..+....  +. ..+....++++|+|.|..+++|-..|++.-|...- +....+.+    ....|.||+|...-.+++
T Consensus       181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~l-eik~~ip~Pp~~e~yrvl~v~Wl~t~eflv  259 (1405)
T KOG3630|consen  181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSL-EIKSEIPEPPVEENYRVLSVTWLSTQEFLV  259 (1405)
T ss_pred             hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeeccc-ceeecccCCCcCCCcceeEEEEecceeEEE
Confidence            998876322  11 13346779999999999999999999999887643 22222322    246899999998888887


Q ss_pred             EEe
Q 047260          691 SVS  693 (784)
Q Consensus       691 sgs  693 (784)
                      +-+
T Consensus       260 vy~  262 (1405)
T KOG3630|consen  260 VYG  262 (1405)
T ss_pred             Eec
Confidence            754

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=95.05  E-value=5.6  Score=42.08  Aligned_cols=227  Identities=12%  Similarity=0.050  Sum_probs=123.3

Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEECCCC---ceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceee
Q 047260          510 VTCCHFSSDGKLLASSGHDRKVVLWNMDTL---QTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQ  586 (784)
Q Consensus       510 V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~---~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~  586 (784)
                      -.++..  .|++..++..|.-..+.|+.+.   .....+......-..++.+  |++-+.+..|+-+.|-|+.++.....
T Consensus       131 aygv~v--sGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvl  206 (370)
T COG5276         131 AYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVL  206 (370)
T ss_pred             EEEEEe--cCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeE
Confidence            344444  4888888886666788888653   2333444444444667775  77888888999999999988664333


Q ss_pred             eccCCCC-CeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec----CCeeEE-EEecCCCEEEEEECCCcEEEEE
Q 047260          587 AYTGHSS-PIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK----GGTAQV-RFQPRIGQLLAAASDKVVSIFD  660 (784)
Q Consensus       587 ~~~~h~~-~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~----~~v~~v-~fsp~~~~Ll~~s~Dg~I~IwD  660 (784)
                      .-.-..+ .+.++..+++..  +++-. +.-+.+-|....+....+.    ..+.++ .+.-.+++.+++..+.-+-+.|
T Consensus       207 i~~~n~g~g~~sv~vsdnr~--y~vvy-~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~id  283 (370)
T COG5276         207 IGSYNTGPGTYSVSVSDNRA--YLVVY-DEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIID  283 (370)
T ss_pred             EEEEecCCceEEEEecCCee--EEEEc-ccceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEe
Confidence            2222223 577777776532  22222 4445566666544332222    122222 3444566777777777777777


Q ss_pred             CCCCeEEE---EEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCC
Q 047260          661 IETDRQTH---SLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGIS  737 (784)
Q Consensus       661 l~t~~~i~---~l~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg  737 (784)
                      +.+.....   .+......-..+..  .+.++..+..+...+.|....+......+....+.++..+-+.+.+.+...++
T Consensus       284 isnp~spfl~ss~~t~g~~a~gi~a--y~~y~yiadkn~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~  361 (370)
T COG5276         284 ISNPPSPFLSSSLDTAGYQAAGIRA--YGNYNYIADKNTGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNG  361 (370)
T ss_pred             ccCCCCCchhccccCCCccccceEE--ecCeeEeccCCceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeecCC
Confidence            76532111   11111111122222  23444444444555555544433333333333345555555555777888888


Q ss_pred             eEEEEECC
Q 047260          738 SLELWNMA  745 (784)
Q Consensus       738 ~I~Iwdl~  745 (784)
                      .+.||+..
T Consensus       362 gl~i~~~~  369 (370)
T COG5276         362 GLSIIEYL  369 (370)
T ss_pred             CEEEEEec
Confidence            88888753

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=94.98  E-value=0.044  Score=55.37  Aligned_cols=136  Identities=16%  Similarity=0.116  Sum_probs=78.7

Q ss_pred             EEEEECCCcEEEEECCCCeEEEE-EeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCc-eEEEeccCCCceEE-EEE
Q 047260          647 LLAAASDKVVSIFDIETDRQTHS-LQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGE-CIQELSSNGNQFHS-CVF  723 (784)
Q Consensus       647 Ll~~s~Dg~I~IwDl~t~~~i~~-l~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~-~i~~l~~~~~~I~s-l~f  723 (784)
                      +.+.+.++.|.-++++..+.-.. ..-+.....-+.+  +..+++.++++.|++|...-.- ....+......|.+ +..
T Consensus        33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~~--~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~  110 (238)
T KOG2444|consen   33 LRATSADGLVRERKVRKHKESCRSERFIDEGQRVVTA--SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPN  110 (238)
T ss_pred             hccccCCcccccchhhhhhhhhhhhhhhhcceeeccc--CceEEeecccceEEEecCCccchHHHhhhcccccceecccc
Confidence            55566678888877765432111 1112222111122  2233444446688888876321 11111111122222 223


Q ss_pred             ecCCCEEEEEECCCeEEEEECCCCceEEec-ccC-CceEEEEEeCCCCEEEEE--ECCCcEEEeC
Q 047260          724 HPSYSTLLVVGGISSLELWNMAENKSMTIA-AHE-NIISALAQSPVTGMVASA--SHDSSVKLWK  784 (784)
Q Consensus       724 spdg~~L~s~s~dg~I~Iwdl~~~~~~~~~-~h~-~~V~slafspdg~~LaSg--s~DG~V~IWd  784 (784)
                      ..++.+.++++.+|.|+.|++.-++.+... .|. .++..+..+..+++|+.+  |.|..++.|+
T Consensus       111 ~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~  175 (238)
T KOG2444|consen  111 GRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWN  175 (238)
T ss_pred             ccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcc
Confidence            344557888999999999999999888444 555 566667777777788888  8888888885

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.96  E-value=0.42  Score=57.84  Aligned_cols=71  Identities=30%  Similarity=0.464  Sum_probs=57.2

Q ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEc---cCCCEEEEEeCCCeEEEEcC
Q 047260          506 RNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFR---PNSSQLATASVDKSVRLWDA  578 (784)
Q Consensus       506 H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fs---pdg~~Latgs~Dg~I~IWdl  578 (784)
                      -.++|+|++|+.||++++.|-.+|.|.+||+.+++.++.+..|..+++.+-+.   .++..++++...|.  +|.+
T Consensus       129 v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  129 VQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             cCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            46789999999999999999999999999999999999988887766655443   45556777766665  5554

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.96  E-value=5.1  Score=48.52  Aligned_cols=94  Identities=18%  Similarity=0.208  Sum_probs=56.7

Q ss_pred             CCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEE
Q 047260          550 SVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTH  629 (784)
Q Consensus       550 ~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~  629 (784)
                      -.|..|.++++|++|+..+..| |.|-.+...-.....+.+-...|.|-.+.-+. .++.+                   
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~-~~~~~-------------------  143 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDE-RFFTS-------------------  143 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEech-hhccC-------------------
Confidence            4688999999999999988866 44444432100112233333344444333222 12211                   


Q ss_pred             eecCCeeEEEEecC---CCEEEEEECCCcEEEEECCCC
Q 047260          630 ITKGGTAQVRFQPR---IGQLLAAASDKVVSIFDIETD  664 (784)
Q Consensus       630 ~~~~~v~~v~fsp~---~~~Ll~~s~Dg~I~IwDl~t~  664 (784)
                      .....+..+.|+|.   +.+|++-++|++|++||+...
T Consensus       144 ~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  144 NSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             CCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence            11234667888886   478999999999999998754

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PHA03098 kelch-like protein; Provisional

Probab=94.96  E-value=0.92  Score=53.21  Aligned_cols=154  Identities=12%  Similarity=0.135  Sum_probs=73.3

Q ss_pred             CcEEEEEeCC-----CeEEEEeCCCCeeEEeec--CCee-EEEEecCCCEEEEEECC------CcEEEEECCCCeEEEE-
Q 047260          605 TDLFCFCDND-----NEIQYWSINPFLCTHITK--GGTA-QVRFQPRIGQLLAAASD------KVVSIFDIETDRQTHS-  669 (784)
Q Consensus       605 ~~ll~sgs~d-----g~I~iwDl~~~~~~~~~~--~~v~-~v~fsp~~~~Ll~~s~D------g~I~IwDl~t~~~i~~-  669 (784)
                      ..+++.|+.+     ..+..||..+..-.....  .+.. .....-++..++.|+.+      ..+..||..+.+-... 
T Consensus       343 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~  422 (534)
T PHA03098        343 NRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGS  422 (534)
T ss_pred             CEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecC
Confidence            4477777654     346778876544332211  1111 11122344555555531      4588899877543221 


Q ss_pred             -EeCCCCCEEEEEEcCCCCEEEEEeC---------CeEEEEeCCCCceEEE--eccCCCceEEEEEecCCCEEEEEECC-
Q 047260          670 -LQGHAELVNYICWDTNGDYLASVSQ---------NLVKVWSMASGECIQE--LSSNGNQFHSCVFHPSYSTLLVVGGI-  736 (784)
Q Consensus       670 -l~~h~~~V~sl~~spdg~~Lasgsd---------d~I~IwDl~t~~~i~~--l~~~~~~I~sl~fspdg~~L~s~s~d-  736 (784)
                       +...... .+++ ..++.+++.|+.         +.+.+||..+.+-...  +.........+.+  ++..++.|+.+ 
T Consensus       423 ~~p~~r~~-~~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~  498 (534)
T PHA03098        423 PLPISHYG-GCAI-YHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKY  498 (534)
T ss_pred             CCCccccC-ceEE-EECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcC
Confidence             1111111 1222 234555555542         1388899887643321  1111111122222  55555666543 


Q ss_pred             ----CeEEEEECCCCceEEecccCCceEEE
Q 047260          737 ----SSLELWNMAENKSMTIAAHENIISAL  762 (784)
Q Consensus       737 ----g~I~Iwdl~~~~~~~~~~h~~~V~sl  762 (784)
                          ..|.+||..++.-..+......+.++
T Consensus       499 ~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~  528 (534)
T PHA03098        499 EYYINEIEVYDDKTNTWTLFCKFPKVIGSL  528 (534)
T ss_pred             CcccceeEEEeCCCCEEEecCCCcccccce
Confidence                47889998887665444433333333

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=94.86  E-value=9  Score=44.60  Aligned_cols=244  Identities=14%  Similarity=0.158  Sum_probs=124.6

Q ss_pred             cCCCCEEEEEeCCCeEEEEECCCCc---eeeecCCC-CCCeEEEEEccCC-CEEEEEeCCCeEEEEcCCCCcc-eeeecc
Q 047260          516 SSDGKLLASSGHDRKVVLWNMDTLQ---TESTPEDH-KSVVTDVRFRPNS-SQLATASVDKSVRLWDAANPNF-CSQAYT  589 (784)
Q Consensus       516 spdg~~Lasgs~Dg~I~IWd~~t~~---~~~~l~~h-~~~It~i~fspdg-~~Latgs~Dg~I~IWdl~~~~~-~~~~~~  589 (784)
                      ..++..++.+..+|.+....+....   .+..+ +. ....+++.+..++ .+|+.|+.-|.=.++.+..... +...+ 
T Consensus       219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~-g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~-  296 (504)
T PF10433_consen  219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYL-GTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSL-  296 (504)
T ss_dssp             STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEE-EE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE-
T ss_pred             cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEc-CCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEec-
Confidence            4467788889999999988776433   12222 22 4556677776554 4788887755444444433222 22222 


Q ss_pred             CCCCCeEEEEEcCC---CC-------cEEEEEe--CCCeEEEEeCCCCe---eEEeec-CCeeEEEEecC----CCEEEE
Q 047260          590 GHSSPIMSLDFHPK---KT-------DLFCFCD--NDNEIQYWSINPFL---CTHITK-GGTAQVRFQPR----IGQLLA  649 (784)
Q Consensus       590 ~h~~~V~sl~~sp~---~~-------~ll~sgs--~dg~I~iwDl~~~~---~~~~~~-~~v~~v~fsp~----~~~Ll~  649 (784)
                      ..-++|.++++.+.   +.       .++++++  .+|.+++..-.-.-   ...... ..+..+-.-+.    +.+++.
T Consensus       297 ~N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~  376 (504)
T PF10433_consen  297 PNWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVL  376 (504)
T ss_dssp             ----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEE
T ss_pred             cCcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceEEEE
Confidence            34578998888532   12       3455544  46788887432111   111111 22443322222    345555


Q ss_pred             EECCCcEEEEECC---CCeEEEEEe--C---CCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEEEeccC-CCceEE
Q 047260          650 AASDKVVSIFDIE---TDRQTHSLQ--G---HAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELSSN-GNQFHS  720 (784)
Q Consensus       650 ~s~Dg~I~IwDl~---t~~~i~~l~--~---h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~~l~~~-~~~I~s  720 (784)
                      ...+ .-+++.+.   ..+.+..+.  +   ....+.+-.+.  +..++=.....|++.+...++....+... +..|.+
T Consensus       377 S~~~-~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~~~i~l~~~~~~~~~~~w~~~~~~~I~~  453 (504)
T PF10433_consen  377 SFPN-ETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTPKGIRLIDLEDGKLTQEWKPPAGSIIVA  453 (504)
T ss_dssp             EESS-EEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEESSEEEEEESSSTSEEEEEE-TTS---SE
T ss_pred             EcCC-ceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEecCeEEEEECCCCeEEEEEeCCCCCeEEE
Confidence            5554 34445442   333332221  1   12233333333  66677777788999998888887776443 344555


Q ss_pred             EEEecCCCEEEEEECCCeEEEEECCCCceE-Eec-----ccCCceEEEEEeC
Q 047260          721 CVFHPSYSTLLVVGGISSLELWNMAENKSM-TIA-----AHENIISALAQSP  766 (784)
Q Consensus       721 l~fspdg~~L~s~s~dg~I~Iwdl~~~~~~-~~~-----~h~~~V~slafsp  766 (784)
                      .+...  .+++++..++.+.++.+...... ...     .....|.|+...|
T Consensus       454 a~~~~--~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p  503 (504)
T PF10433_consen  454 ASIND--PQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP  503 (504)
T ss_dssp             EEESS--SEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred             EEECC--CEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence            55543  47888888889999988877654 111     2567888888766

...

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=94.84  E-value=0.79  Score=51.08  Aligned_cols=107  Identities=10%  Similarity=0.069  Sum_probs=61.1

Q ss_pred             EEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEE-eCCCC-----c--eE-EEeccC----CCceEEEEEecCCCEEEEEEC
Q 047260          669 SLQGHAELVNYICWDTNGDYLASVSQNLVKVW-SMASG-----E--CI-QELSSN----GNQFHSCVFHPSYSTLLVVGG  735 (784)
Q Consensus       669 ~l~~h~~~V~sl~~spdg~~Lasgsdd~I~Iw-Dl~t~-----~--~i-~~l~~~----~~~I~sl~fspdg~~L~s~s~  735 (784)
                      .+.........+++.++| ++++ +...|..| |....     +  .+ ..+...    ......++|.|+|.+.++.+.
T Consensus        66 vfa~~l~~p~Gi~~~~~G-lyV~-~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~  143 (367)
T TIGR02604        66 VFAEELSMVTGLAVAVGG-VYVA-TPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGN  143 (367)
T ss_pred             EeecCCCCccceeEecCC-EEEe-CCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEeccc
Confidence            343334456788998988 4444 44445444 54321     1  12 223221    244678999999986665552


Q ss_pred             C-------------------CeEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEECC
Q 047260          736 I-------------------SSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHD  777 (784)
Q Consensus       736 d-------------------g~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs~D  777 (784)
                      .                   |.|.-++..+++...+...-.....++|+++|.++++-..+
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~  204 (367)
T TIGR02604       144 TLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDNDD  204 (367)
T ss_pred             CCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEccCC
Confidence            1                   34556666655544333233446789999999888765433

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=94.79  E-value=2.6  Score=48.14  Aligned_cols=267  Identities=11%  Similarity=0.071  Sum_probs=136.9

Q ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCC-CCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcce
Q 047260          506 RNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHK-SVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFC  584 (784)
Q Consensus       506 H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~-~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~  584 (784)
                      -..+|..+.+.-.|. |.+|+.|| +..||..+++.+....... ..|..+..+-.+ .|.+|+++| |.+.+.+.....
T Consensus       163 ~d~~V~aLv~D~~g~-lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg-~LWVGTdqG-v~~~e~~G~~~s  238 (671)
T COG3292         163 KDTPVVALVFDANGR-LWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQG-RLWVGTDQG-VYLQEAEGWRAS  238 (671)
T ss_pred             cCccceeeeeeccCc-EEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcC-cEEEEeccc-eEEEchhhcccc
Confidence            345688888888885 55577777 8888888888776654433 667766666555 477777766 777776652211


Q ss_pred             eeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec-----CCeeEEEEecCCCEEEEEECCCcEEEE
Q 047260          585 SQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK-----GGTAQVRFQPRIGQLLAAASDKVVSIF  659 (784)
Q Consensus       585 ~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~-----~~v~~v~fsp~~~~Ll~~s~Dg~I~Iw  659 (784)
                      .....-....|..+.-...+.  +-.|+.+|..+.---+....+...+     ..+..+....+ ..+.+++.++.+++-
T Consensus       239 n~~~~lp~~~I~ll~qD~qG~--lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~d-GsLWv~t~~giv~~~  315 (671)
T COG3292         239 NWGPMLPSGNILLLVQDAQGE--LWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTD-GSLWVGTYGGIVRYL  315 (671)
T ss_pred             ccCCCCcchheeeeecccCCC--EEEeecccceeEecCCCCccccccccCCccccccceeeccC-CCEeeeccCceEEEe
Confidence            111111233444444333443  3345545544332222221111111     22333333333 457777777777665


Q ss_pred             ECCCCeEEEEEeCCCC-CEEEEEEcC---CCCEEEEEeCCeEEEEeCCCCceEEEecc-CCCceEEEEEecCCCEEEEEE
Q 047260          660 DIETDRQTHSLQGHAE-LVNYICWDT---NGDYLASVSQNLVKVWSMASGECIQELSS-NGNQFHSCVFHPSYSTLLVVG  734 (784)
Q Consensus       660 Dl~t~~~i~~l~~h~~-~V~sl~~sp---dg~~Lasgsdd~I~IwDl~t~~~i~~l~~-~~~~I~sl~fspdg~~L~s~s  734 (784)
                      +..- .....+...++ .+-.++..|   +.......+.+.+.+-+-.++..+..... ....|+.+++..++ .+..++
T Consensus       316 ~a~w-~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg~nit~~~~d~~g-~lWlgs  393 (671)
T COG3292         316 TADW-KRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRGMNITTTLEDSRG-RLWLGS  393 (671)
T ss_pred             cchh-hheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeeccccccchhhhccCC-cEEEEe
Confidence            5431 11111211111 111111122   11111111222344444455555444322 23456666666644 466666


Q ss_pred             CCCeEEEEECCC-CceEEec--ccCCceEEEEEeCCCCEEEEEECCCcEEE
Q 047260          735 GISSLELWNMAE-NKSMTIA--AHENIISALAQSPVTGMVASASHDSSVKL  782 (784)
Q Consensus       735 ~dg~I~Iwdl~~-~~~~~~~--~h~~~V~slafspdg~~LaSgs~DG~V~I  782 (784)
                      ..+-+..|+..+ +..+...  ...++|..|--.|+++ |..|+.+|.++.
T Consensus       394 ~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk~  443 (671)
T COG3292         394 MQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVKR  443 (671)
T ss_pred             cccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEec
Confidence            665577777666 3333222  2456788888888888 666778887653

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=94.69  E-value=0.092  Score=39.94  Aligned_cols=35  Identities=23%  Similarity=0.443  Sum_probs=30.2

Q ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCce
Q 047260          506 RNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQT  541 (784)
Q Consensus       506 H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~  541 (784)
                      ....|.+++|+|..++||.+..+|.|.||.+ +++.
T Consensus        10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            3456999999999999999999999999998 4443

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=94.69  E-value=5.3  Score=41.89  Aligned_cols=205  Identities=13%  Similarity=0.096  Sum_probs=123.3

Q ss_pred             CeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEe
Q 047260          551 VVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHI  630 (784)
Q Consensus       551 ~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~  630 (784)
                      .-..++-.+||..-+++...+.|--.|-.+++. ...-.+.......|..-|++...|+  +...-|.-.|-++......
T Consensus        63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev-~~ypLg~Ga~Phgiv~gpdg~~Wit--d~~~aI~R~dpkt~evt~f  139 (353)
T COG4257          63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEV-ETYPLGSGASPHGIVVGPDGSAWIT--DTGLAIGRLDPKTLEVTRF  139 (353)
T ss_pred             CccccccCCCCceEEecCccccceecCCCCCce-EEEecCCCCCCceEEECCCCCeeEe--cCcceeEEecCcccceEEe
Confidence            345677788888888888888888888888773 3333344556677788888874443  2222455555544333221


Q ss_pred             ------ecCCeeEEEEecCCCEEEEEEC---------CCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-C
Q 047260          631 ------TKGGTAQVRFQPRIGQLLAAAS---------DKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVS-Q  694 (784)
Q Consensus       631 ------~~~~v~~v~fsp~~~~Ll~~s~---------Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgs-d  694 (784)
                            -........|.+.|..-+++..         .+.|++|+..          ....-+.||..|+|...++.- +
T Consensus       140 ~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP----------qG~gpyGi~atpdGsvwyaslag  209 (353)
T COG4257         140 PLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP----------QGGGPYGICATPDGSVWYASLAG  209 (353)
T ss_pred             ecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC----------CCCCCcceEECCCCcEEEEeccc
Confidence                  1245567789999888777653         1344444433          223456788999999877655 4


Q ss_pred             CeEEEEeCCCCceEEEeccC---CCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE--EecccCCceEEEEEeCCCC
Q 047260          695 NLVKVWSMASGECIQELSSN---GNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM--TIAAHENIISALAQSPVTG  769 (784)
Q Consensus       695 d~I~IwDl~t~~~i~~l~~~---~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~--~~~~h~~~V~slafspdg~  769 (784)
                      +.|...|..++.. ..+...   ......+-.+|.+..-++....+.++.||.....-.  .+.+....-.++.+...++
T Consensus       210 naiaridp~~~~a-ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~gr  288 (353)
T COG4257         210 NAIARIDPFAGHA-EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGR  288 (353)
T ss_pred             cceEEcccccCCc-ceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCc
Confidence            5888888777622 222211   233455566777877777777788888887665433  3333333344444444343

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.67  E-value=4.1  Score=48.09  Aligned_cols=195  Identities=13%  Similarity=0.068  Sum_probs=97.4

Q ss_pred             CCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCccee--eeccCCCCCeEEEEEcCCCC
Q 047260          528 DRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCS--QAYTGHSSPIMSLDFHPKKT  605 (784)
Q Consensus       528 Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~--~~~~~h~~~V~sl~~sp~~~  605 (784)
                      --.|+||++. |..+..+.-....+..+.|+.+. .|++...||+++||++-......  ..+......|..+.|..+| 
T Consensus        63 ~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~G-  139 (829)
T KOG2280|consen   63 RPYIRIFNIS-GQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNG-  139 (829)
T ss_pred             ceeEEEEecc-ccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCc-
Confidence            3458888876 55555544344478899999655 57777899999999986533111  1112222334444444444 


Q ss_pred             cEEEEEeCCCeEEEEeCCCCeeEEeec------CCeeEEEEecCCC---EEEEEECCCcEEEEECCCC-eEEEEEeCCCC
Q 047260          606 DLFCFCDNDNEIQYWSINPFLCTHITK------GGTAQVRFQPRIG---QLLAAASDKVVSIFDIETD-RQTHSLQGHAE  675 (784)
Q Consensus       606 ~ll~sgs~dg~I~iwDl~~~~~~~~~~------~~v~~v~fsp~~~---~Ll~~s~Dg~I~IwDl~t~-~~i~~l~~h~~  675 (784)
                       +++-...+..+.+-+..... ....+      ....|-...+.+.   .++-....-...++-.+.. ...+.+.....
T Consensus       140 -Vavlt~~g~v~~i~~~~~~~-~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~  217 (829)
T KOG2280|consen  140 -VAVLTVSGQVILINGVEEPK-LRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNS  217 (829)
T ss_pred             -eEEEecCCcEEEEcCCCcch-hhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCc
Confidence             33333323333333333211 11111      1112222222211   1111110000111111111 11222332346


Q ss_pred             CEEEEEEcCCCCEEEEEe-CCeEEEEeCCCCceEEEeccCC-CceEEEEEecCC
Q 047260          676 LVNYICWDTNGDYLASVS-QNLVKVWSMASGECIQELSSNG-NQFHSCVFHPSY  727 (784)
Q Consensus       676 ~V~sl~~spdg~~Lasgs-dd~I~IwDl~t~~~i~~l~~~~-~~I~sl~fspdg  727 (784)
                      .+..+..||+.++|+--. .|.|.+-+....+++.++.... .....++|..+.
T Consensus       218 ~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd  271 (829)
T KOG2280|consen  218 SVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND  271 (829)
T ss_pred             eEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCC
Confidence            778889999999998877 4588888888777777776322 222355665544

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=94.61  E-value=9.3  Score=42.49  Aligned_cols=191  Identities=17%  Similarity=0.174  Sum_probs=111.7

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEcc----CCCE--EEEEeC-C---CeEEEEcCCCCcceeee
Q 047260          518 DGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRP----NSSQ--LATASV-D---KSVRLWDAANPNFCSQA  587 (784)
Q Consensus       518 dg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fsp----dg~~--Latgs~-D---g~I~IWdl~~~~~~~~~  587 (784)
                      ...+|+....++-+.+||+. ++.+..+.  .+.++.+....    .++.  |+.++. +   .+|++|.+......+..
T Consensus        67 ~kSlIigTdK~~GL~VYdL~-Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~  143 (381)
T PF02333_consen   67 AKSLIIGTDKKGGLYVYDLD-GKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTD  143 (381)
T ss_dssp             GG-EEEEEETTTEEEEEETT-S-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE
T ss_pred             ccceEEEEeCCCCEEEEcCC-CcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceE
Confidence            44577777888889999998 55556553  23344443321    3432  444443 2   47999988642222222


Q ss_pred             ccC-------CCCCeEEEEEc--C-CCCcEEEEEeCCCeEEEEeCC---CC----eeEEeec--CCeeEEEEecCCCEEE
Q 047260          588 YTG-------HSSPIMSLDFH--P-KKTDLFCFCDNDNEIQYWSIN---PF----LCTHITK--GGTAQVRFQPRIGQLL  648 (784)
Q Consensus       588 ~~~-------h~~~V~sl~~s--p-~~~~ll~sgs~dg~I~iwDl~---~~----~~~~~~~--~~v~~v~fsp~~~~Ll  648 (784)
                      +..       ....++.+|+.  + ++..+++....+|.+..|.+.   .+    +.++.+.  ..+..|.+......|+
T Consensus       144 v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LY  223 (381)
T PF02333_consen  144 VTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRLY  223 (381)
T ss_dssp             -CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEE
T ss_pred             cCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCEE
Confidence            221       12346777764  3 456677778889999888774   22    3445444  5677888899999999


Q ss_pred             EEECCCcEEEEECCCC-----eEEEEEeC--CCCCEEEEEEc--CCC-CEEEEEeC--CeEEEEeCCC-CceEEEe
Q 047260          649 AAASDKVVSIFDIETD-----RQTHSLQG--HAELVNYICWD--TNG-DYLASVSQ--NLVKVWSMAS-GECIQEL  711 (784)
Q Consensus       649 ~~s~Dg~I~IwDl~t~-----~~i~~l~~--h~~~V~sl~~s--pdg-~~Lasgsd--d~I~IwDl~t-~~~i~~l  711 (784)
                      ++-.+.-|.-|+.+..     ..+....+  ....|-.|++-  .++ .||++++.  ++..|||... ...+..|
T Consensus       224 vgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g~f  299 (381)
T PF02333_consen  224 VGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAYVGSF  299 (381)
T ss_dssp             EEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--EEEEE
T ss_pred             EecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcccceE
Confidence            9999988888888632     22322222  34567777764  344 37777764  3999999875 3444444

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=94.61  E-value=9.9  Score=42.81  Aligned_cols=107  Identities=12%  Similarity=0.063  Sum_probs=67.7

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCc-----eEEEecc--CCCceEEEEEecCCCEEEEEECCCeEEEEECC
Q 047260          673 HAELVNYICWDTNGDYLASVSQNLVKVWSMASGE-----CIQELSS--NGNQFHSCVFHPSYSTLLVVGGISSLELWNMA  745 (784)
Q Consensus       673 h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~-----~i~~l~~--~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~  745 (784)
                      ....+..+.|.+++.+++++..+.+. |....++     ...++..  ....+..+.|.+++. +++++..|.+... ..
T Consensus       279 ~~~~l~~v~~~~dg~l~l~g~~G~l~-~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~-~~a~G~~G~v~~s-~D  355 (398)
T PLN00033        279 SARRIQNMGWRADGGLWLLTRGGGLY-VSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKE-AWAAGGSGILLRS-TD  355 (398)
T ss_pred             CccceeeeeEcCCCCEEEEeCCceEE-EecCCCCcccccceeecccCCCCcceEEEEEcCCCc-EEEEECCCcEEEe-CC
Confidence            34578899999999999888776543 3333443     2233322  223588899987765 6677777766655 34


Q ss_pred             CCceEEe----cccCCceEEEEEeCCCCEEEEEECCCcEEEe
Q 047260          746 ENKSMTI----AAHENIISALAQSPVTGMVASASHDSSVKLW  783 (784)
Q Consensus       746 ~~~~~~~----~~h~~~V~slafspdg~~LaSgs~DG~V~IW  783 (784)
                      .++.-..    ..-...++.+.|.++++.+++| .+|.|.-|
T Consensus       356 ~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~  396 (398)
T PLN00033        356 GGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLRY  396 (398)
T ss_pred             CCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence            4444322    2234568899998776666654 67877665

>PRK13684 Ycf48-like protein; Provisional

Probab=94.59  E-value=5.8  Score=43.58  Aligned_cols=147  Identities=10%  Similarity=0.154  Sum_probs=86.7

Q ss_pred             CCCeEEEEEccCCCEEEEEeCCCeEEE-EcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCee
Q 047260          549 KSVVTDVRFRPNSSQLATASVDKSVRL-WDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLC  627 (784)
Q Consensus       549 ~~~It~i~fspdg~~Latgs~Dg~I~I-Wdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~  627 (784)
                      ...+.++.+.+++.+++++ ..|.+.. +|-. ++........-...+.++.+.+++. +++++ ..|.+++-..+.+..
T Consensus       172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~g-g~tW~~~~~~~~~~l~~i~~~~~g~-~~~vg-~~G~~~~~s~d~G~s  247 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWEPG-QTAWTPHQRNSSRRLQSMGFQPDGN-LWMLA-RGGQIRFNDPDDLES  247 (334)
T ss_pred             cceEEEEEECCCCeEEEEe-CCceEEEEcCCC-CCeEEEeeCCCcccceeeeEcCCCC-EEEEe-cCCEEEEccCCCCCc
Confidence            4578999999988766555 4565443 2222 1212222334456789999999876 44444 467665433333322


Q ss_pred             EEee-------cCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEe---CCCCCEEEEEEcCCCCEEEEEeCCeE
Q 047260          628 THIT-------KGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQ---GHAELVNYICWDTNGDYLASVSQNLV  697 (784)
Q Consensus       628 ~~~~-------~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~---~h~~~V~sl~~spdg~~Lasgsdd~I  697 (784)
                      ....       ...+..+.+.+++. +++++.+|.|.. ....++......   .-....+.+.|..+++.+++|..+.|
T Consensus       248 W~~~~~~~~~~~~~l~~v~~~~~~~-~~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~i  325 (334)
T PRK13684        248 WSKPIIPEITNGYGYLDLAYRTPGE-IWAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVL  325 (334)
T ss_pred             cccccCCccccccceeeEEEcCCCC-EEEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceE
Confidence            2211       12356778888655 566666776553 334444333332   22246788888888889998888887


Q ss_pred             EEEe
Q 047260          698 KVWS  701 (784)
Q Consensus       698 ~IwD  701 (784)
                      ..|+
T Consensus       326 l~~~  329 (334)
T PRK13684        326 LRYV  329 (334)
T ss_pred             EEec
Confidence            7775

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=94.55  E-value=10  Score=42.81  Aligned_cols=142  Identities=15%  Similarity=0.192  Sum_probs=82.7

Q ss_pred             CCCEEEEEeCCCeEEEEcCCCCcce---eeeccCCCCCeEEEEEcC---CCCcEEEEEeCCCeEEEEeCCCC--------
Q 047260          560 NSSQLATASVDKSVRLWDAANPNFC---SQAYTGHSSPIMSLDFHP---KKTDLFCFCDNDNEIQYWSINPF--------  625 (784)
Q Consensus       560 dg~~Latgs~Dg~I~IWdl~~~~~~---~~~~~~h~~~V~sl~~sp---~~~~ll~sgs~dg~I~iwDl~~~--------  625 (784)
                      +...|++||..|.++||+.......   ...-..-..+|..|..-.   ....+.++.-.-..+.+|.+...        
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~  115 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN  115 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence            3468999999999999998654311   111123346777776542   22222222344566777766210        


Q ss_pred             ----eeE--EeecCCeeEEEEecCC-----CEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeC
Q 047260          626 ----LCT--HITKGGTAQVRFQPRI-----GQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQ  694 (784)
Q Consensus       626 ----~~~--~~~~~~v~~v~fsp~~-----~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsd  694 (784)
                          +..  +.+......+++-|-|     ..+.+-+.||.+.+|+-+.....+.+.. .---..+++.+.-..|++++.
T Consensus       116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~ss  194 (418)
T PF14727_consen  116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASS  194 (418)
T ss_pred             EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecC
Confidence                111  1122333444443332     4577778899999999876655454443 222234677777777777776


Q ss_pred             C-eEEEEeC
Q 047260          695 N-LVKVWSM  702 (784)
Q Consensus       695 d-~I~IwDl  702 (784)
                      . .|..|..
T Consensus       195 s~~l~~Yky  203 (418)
T PF14727_consen  195 SWTLECYKY  203 (418)
T ss_pred             ceeEEEecH
Confidence            5 7887765

>PHA03098 kelch-like protein; Provisional

Probab=94.51  E-value=1.3  Score=52.03  Aligned_cols=183  Identities=10%  Similarity=0.079  Sum_probs=86.8

Q ss_pred             CCCEEEEEeCCC------eEEEEECCCCceeeec--CCCCCCeEEEEEccCCCEEEEEeCC-----CeEEEEcCCCCcce
Q 047260          518 DGKLLASSGHDR------KVVLWNMDTLQTESTP--EDHKSVVTDVRFRPNSSQLATASVD-----KSVRLWDAANPNFC  584 (784)
Q Consensus       518 dg~~Lasgs~Dg------~I~IWd~~t~~~~~~l--~~h~~~It~i~fspdg~~Latgs~D-----g~I~IWdl~~~~~~  584 (784)
                      ++.+++.||.++      .+..||..+.+....-  .........+.+  ++.+++.|+.+     ..+.+||..+....
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~  371 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKWR  371 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence            456667776542      4778888765543221  111112222222  67777888765     35778888775532


Q ss_pred             eeeccCCCCCeEEEEEcCCCCcEEEEEeCC------CeEEEEeCCCCeeEEeecCC--e-eEEEEecCCCEEEEEECC--
Q 047260          585 SQAYTGHSSPIMSLDFHPKKTDLFCFCDND------NEIQYWSINPFLCTHITKGG--T-AQVRFQPRIGQLLAAASD--  653 (784)
Q Consensus       585 ~~~~~~h~~~V~sl~~sp~~~~ll~sgs~d------g~I~iwDl~~~~~~~~~~~~--v-~~v~fsp~~~~Ll~~s~D--  653 (784)
                      ...-..+...-.+++..  +..+++.|+.+      ..+..||+.+.+-......+  . ...+...++..++.|+.+  
T Consensus       372 ~~~~lp~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~  449 (534)
T PHA03098        372 EEPPLIFPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYI  449 (534)
T ss_pred             eCCCcCcCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCC
Confidence            21111111111122222  33466666632      35788888765433322111  1 111222344455555532  


Q ss_pred             ------CcEEEEECCCCeEEEE--EeCCCCCEEEEEEcCCCCEEEEEeC------CeEEEEeCCCCc
Q 047260          654 ------KVVSIFDIETDRQTHS--LQGHAELVNYICWDTNGDYLASVSQ------NLVKVWSMASGE  706 (784)
Q Consensus       654 ------g~I~IwDl~t~~~i~~--l~~h~~~V~sl~~spdg~~Lasgsd------d~I~IwDl~t~~  706 (784)
                            ..+.+||..+.+-...  +.........+.+  ++++++.|+.      +.|.+||..+.+
T Consensus       450 ~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~  514 (534)
T PHA03098        450 DNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNT  514 (534)
T ss_pred             CCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence                  2388899887643221  1111111112222  5666666652      267778776653

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=94.49  E-value=1.2  Score=44.64  Aligned_cols=174  Identities=12%  Similarity=0.131  Sum_probs=101.3

Q ss_pred             CCCEEEEEeC--CCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCCeeE
Q 047260          560 NSSQLATASV--DKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQ  637 (784)
Q Consensus       560 dg~~Latgs~--Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v~~  637 (784)
                      ++.++.+.+.  ...|++||+++++........ ...+..=-...-+..+....-.+|.-.++|.++.+++..+.-.-..
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~-~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeG  133 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLA-PDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEG  133 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecC-CccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcc
Confidence            4566666554  346999999987744332222 1122211111224445556667899999999998888766533333


Q ss_pred             EEEecCCCEEEEEECCCcEEEEECCCCeEEEEEe----C-CCCCEEEEEEcCCCCEEEEEe-CCeEEEEeCCCCceEEEe
Q 047260          638 VRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQ----G-HAELVNYICWDTNGDYLASVS-QNLVKVWSMASGECIQEL  711 (784)
Q Consensus       638 v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~----~-h~~~V~sl~~spdg~~Lasgs-dd~I~IwDl~t~~~i~~l  711 (784)
                      -....++..|+.+....++..-|.++.....++.    + .-..++.+.|- +|.+.+-.- .+.|...|..+|+.+..+
T Consensus       134 WgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~wi  212 (262)
T COG3823         134 WGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVAWI  212 (262)
T ss_pred             eeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEEEE
Confidence            3344566667777777788888877654443332    1 11233344442 455554433 346667777777766554


Q ss_pred             c------------cCCCceEEEEEecCCCEEEEEEC
Q 047260          712 S------------SNGNQFHSCVFHPSYSTLLVVGG  735 (784)
Q Consensus       712 ~------------~~~~~I~sl~fspdg~~L~s~s~  735 (784)
                      .            .+.+..+.+++.|+...++..+.
T Consensus       213 dlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK  248 (262)
T COG3823         213 DLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK  248 (262)
T ss_pred             EccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence            3            23345688899998865555443

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=94.48  E-value=1.2  Score=52.55  Aligned_cols=125  Identities=12%  Similarity=0.158  Sum_probs=81.1

Q ss_pred             cceeEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecC-CCCCCeEEEEEcc--CCCEEEEEeCCC
Q 047260          495 FTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPE-DHKSVVTDVRFRP--NSSQLATASVDK  571 (784)
Q Consensus       495 ~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~-~h~~~It~i~fsp--dg~~Latgs~Dg  571 (784)
                      ..+....++..--..+..+.-|.-++..++-+....+.|||...+.....-. ...+.|.++.|..  ++..+++.+...
T Consensus        17 ~~w~~t~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~   96 (631)
T PF12234_consen   17 IEWLLTSTFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPH   96 (631)
T ss_pred             EEEEEEEEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCc
Confidence            3445555565555666667666666655555555679999999876544332 4578899999975  888999999999


Q ss_pred             eEEEEcCC-----CCcc---eee--eccCCC-CCeEEEEEcCCCCcEEEEEeCCCeEEEEeC
Q 047260          572 SVRLWDAA-----NPNF---CSQ--AYTGHS-SPIMSLDFHPKKTDLFCFCDNDNEIQYWSI  622 (784)
Q Consensus       572 ~I~IWdl~-----~~~~---~~~--~~~~h~-~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl  622 (784)
                      .|.+|.--     +...   .++  .+..|+ .+|.+..|.++|.  +++++ ++.+.|+|-
T Consensus        97 ~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~--LvV~s-GNqlfv~dk  155 (631)
T PF12234_consen   97 HVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGT--LVVGS-GNQLFVFDK  155 (631)
T ss_pred             EEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCe--EEEEe-CCEEEEECC
Confidence            99998532     1110   111  122333 5788999998885  33333 566777764

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.48  E-value=3.2  Score=50.20  Aligned_cols=85  Identities=21%  Similarity=0.294  Sum_probs=58.1

Q ss_pred             eEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCC----------Cce--e-eec--------CCCCCCeEEEE
Q 047260          498 CEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDT----------LQT--E-STP--------EDHKSVVTDVR  556 (784)
Q Consensus       498 ~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t----------~~~--~-~~l--------~~h~~~It~i~  556 (784)
                      ..+.....-.-.|..|.++++|++||..|..|. .|-.+..          ++.  . +++        ..+...|..+.
T Consensus        75 q~L~~~~~~~f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~  153 (717)
T PF10168_consen   75 QKLLPSNPPLFEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVR  153 (717)
T ss_pred             ceeecCCCCceeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEE
Confidence            333333334457999999999999999998774 4433321          111  1 111        13456799999


Q ss_pred             EccC---CCEEEEEeCCCeEEEEcCCCCcc
Q 047260          557 FRPN---SSQLATASVDKSVRLWDAANPNF  583 (784)
Q Consensus       557 fspd---g~~Latgs~Dg~I~IWdl~~~~~  583 (784)
                      |+|.   +..|++-..|+++|+||+.....
T Consensus       154 WhP~s~~~~~l~vLtsdn~lR~y~~~~~~~  183 (717)
T PF10168_consen  154 WHPWSESDSHLVVLTSDNTLRLYDISDPQH  183 (717)
T ss_pred             EcCCCCCCCeEEEEecCCEEEEEecCCCCC
Confidence            9994   57888989999999999976543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.34  E-value=4  Score=45.47  Aligned_cols=117  Identities=10%  Similarity=0.167  Sum_probs=82.9

Q ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCce----eeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCC
Q 047260          506 RNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQT----ESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANP  581 (784)
Q Consensus       506 H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~----~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~  581 (784)
                      ..++|.++.||+|.+.||+--.|.+|.+++....+.    ..+.+..+..|....|+.+ .-+|..+..| +-+|.+...
T Consensus        65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pe  142 (657)
T KOG2377|consen   65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPE  142 (657)
T ss_pred             CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchh
Confidence            567899999999999999999999999999843222    2223344566899999865 5566665444 778877766


Q ss_pred             cceeeeccCCCCCeEEEEEcCCCCcEEEEEe-CCCeEEEEeCCC
Q 047260          582 NFCSQAYTGHSSPIMSLDFHPKKTDLFCFCD-NDNEIQYWSINP  624 (784)
Q Consensus       582 ~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs-~dg~I~iwDl~~  624 (784)
                      +...+....|...|.-..|.++..-++.+.+ ..+.+.-+.+++
T Consensus       143 krslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~  186 (657)
T KOG2377|consen  143 KRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRA  186 (657)
T ss_pred             hhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEee
Confidence            6667777788888999999998775555444 344444444443

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=94.29  E-value=1.1  Score=52.84  Aligned_cols=109  Identities=16%  Similarity=0.183  Sum_probs=73.3

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEec-cCCCceEEEEEe--cCCCEEEEEECCCeEEEEECC----
Q 047260          674 AELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELS-SNGNQFHSCVFH--PSYSTLLVVGGISSLELWNMA----  745 (784)
Q Consensus       674 ~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~-~~~~~I~sl~fs--pdg~~L~s~s~dg~I~Iwdl~----  745 (784)
                      ......+.-+.-++..++.+++ .+.|||.+.+....+-. .....|.++.|.  |++..|++.|-...|.+|.-.    
T Consensus        29 i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy  108 (631)
T PF12234_consen   29 ISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY  108 (631)
T ss_pred             CCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence            3344445555556665555555 99999999887544333 456789999885  788999999999999998532    


Q ss_pred             -CC-------ceEEecccC-CceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          746 -EN-------KSMTIAAHE-NIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       746 -~~-------~~~~~~~h~-~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                       ..       +.+.+..|+ .+|.+.+|.++|.+++.++  +.+.|+|
T Consensus       109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~d  154 (631)
T PF12234_consen  109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFD  154 (631)
T ss_pred             hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEEC
Confidence             11       112344454 6899999999987666553  3465554

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=94.25  E-value=5.3  Score=48.74  Aligned_cols=171  Identities=11%  Similarity=0.001  Sum_probs=85.4

Q ss_pred             EEEEEeCCCeEEEEeCCCCeeEEeecC--Cee-------------EEEEec--CCCEEEEEEC----------CCcEEEE
Q 047260          607 LFCFCDNDNEIQYWSINPFLCTHITKG--GTA-------------QVRFQP--RIGQLLAAAS----------DKVVSIF  659 (784)
Q Consensus       607 ll~sgs~dg~I~iwDl~~~~~~~~~~~--~v~-------------~v~fsp--~~~~Ll~~s~----------Dg~I~Iw  659 (784)
                      .++.++.|+.|.-.|.++++....+..  .+.             .+.-.|  .++.+++++.          +|.|+-|
T Consensus       262 rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~  341 (764)
T TIGR03074       262 RIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAF  341 (764)
T ss_pred             EEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEE
Confidence            566677899999999998877754431  110             011111  1356666643          5889999


Q ss_pred             ECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC--eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCC
Q 047260          660 DIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN--LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGIS  737 (784)
Q Consensus       660 Dl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd--~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg  737 (784)
                      |+++++.+..+..-.......  .+.+.....++.+  ....+|.+.+....-. +...+    .+....+........+
T Consensus       342 Da~TGkl~W~~~~g~p~~~~~--~~~g~~~~~gg~n~W~~~s~D~~~glvy~pt-Gn~~p----d~~g~~r~~~~n~y~~  414 (764)
T TIGR03074       342 DVNTGALVWAWDPGNPDPTAP--PAPGETYTRNTPNSWSVASYDEKLGLVYLPM-GNQTP----DQWGGDRTPADEKYSS  414 (764)
T ss_pred             ECCCCcEeeEEecCCCCcccC--CCCCCEeccCCCCccCceEEcCCCCeEEEeC-CCccc----cccCCccccCcccccc
Confidence            999999998876321111111  1233433323322  4455565555432211 11100    0100000000111235


Q ss_pred             eEEEEECCCCceE-Eec--ccCC-------ceEEEEEeC-CCC---EEEEEECCCcEEEeC
Q 047260          738 SLELWNMAENKSM-TIA--AHEN-------IISALAQSP-VTG---MVASASHDSSVKLWK  784 (784)
Q Consensus       738 ~I~Iwdl~~~~~~-~~~--~h~~-------~V~slafsp-dg~---~LaSgs~DG~V~IWd  784 (784)
                      .|.-.|.++++.. .+.  .|+-       ...-+.+.. +|+   .|+.++.+|.+.+.|
T Consensus       415 slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlD  475 (764)
T TIGR03074       415 SLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLD  475 (764)
T ss_pred             eEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEE
Confidence            6777788888776 222  2211       111122222 443   788888888888765

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2

Probab=94.18  E-value=10  Score=41.11  Aligned_cols=229  Identities=10%  Similarity=0.007  Sum_probs=113.1

Q ss_pred             CCCEEEEEeCCCeEEEEECCC--CceeeecCCCCCCeEEEEEccCCCEEEEEe-CCCeEEEEcCCCCcc-----------
Q 047260          518 DGKLLASSGHDRKVVLWNMDT--LQTESTPEDHKSVVTDVRFRPNSSQLATAS-VDKSVRLWDAANPNF-----------  583 (784)
Q Consensus       518 dg~~Lasgs~Dg~I~IWd~~t--~~~~~~l~~h~~~It~i~fspdg~~Latgs-~Dg~I~IWdl~~~~~-----------  583 (784)
                      ++++|+.|+.+| |.+.++..  .+....+  +...|+++...+.-+.|++-+ ....++++++..-..           
T Consensus        12 ~~~~lL~GTe~G-ly~~~~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~   88 (302)
T smart00036       12 DGKWLLVGTEEG-LYVLNISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLV   88 (302)
T ss_pred             CCcEEEEEeCCc-eEEEEcccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccc
Confidence            346899999999 55566654  3344433  567899999999777666654 334499999843210           


Q ss_pred             ---eeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCC----CeeEEe------e-cCCeeEEEEecC--CCEE
Q 047260          584 ---CSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINP----FLCTHI------T-KGGTAQVRFQPR--IGQL  647 (784)
Q Consensus       584 ---~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~----~~~~~~------~-~~~v~~v~fsp~--~~~L  647 (784)
                         .......|......+.+......+++++.....|.++....    ......      . ..++..+..+++  ...+
T Consensus        89 ~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~l  168 (302)
T smart00036       89 IRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGI  168 (302)
T ss_pred             ccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEE
Confidence               00112234333333343332223334444455666654321    111111      0 112222222332  4567


Q ss_pred             EEEECCCcEEEEECCC--CeEE-----EEEeCCC-CCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCce--EEEeccCCCc
Q 047260          648 LAAASDKVVSIFDIET--DRQT-----HSLQGHA-ELVNYICWDTNGDYLASVSQNLVKVWSMASGEC--IQELSSNGNQ  717 (784)
Q Consensus       648 l~~s~Dg~I~IwDl~t--~~~i-----~~l~~h~-~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~--i~~l~~~~~~  717 (784)
                      ++|+..+...++++..  ....     ....... .++..+. -+++.+|+ +-++...+.|....+.  ...+.- ...
T Consensus       169 cvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~-l~~~e~Ll-c~~~~~v~Vn~~G~~~~r~~~l~w-~~~  245 (302)
T smart00036      169 CIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQ-VPRDEFLL-CYDEFGVFVNLYGKRRSRNPILHW-EFM  245 (302)
T ss_pred             EEEEcCCCCeEEEEeecccccccccccccccccccCceEEEE-ECCCeEEE-EECcEEEEEeCCCCccccceEEEc-CCc
Confidence            7776643444444432  1000     0011111 2333333 34455554 4455455555443111  112221 234


Q ss_pred             eEEEEEecCCCEEEEEECCCeEEEEECCCCceEEeccc
Q 047260          718 FHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIAAH  755 (784)
Q Consensus       718 I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~~~h  755 (784)
                      ..++++..  ++|++...+ .|.|+++.+++.+....+
T Consensus       246 p~~~~~~~--pyll~~~~~-~ievr~l~~~~l~q~i~~  280 (302)
T smart00036      246 PESFAYHS--PYLLAFHDN-GIEIRSIKTGELLQELAD  280 (302)
T ss_pred             ccEEEEEC--CEEEEEcCC-cEEEEECCCCceEEEEec
Confidence            46667763  577777654 599999999987644433

Unpublished observations.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=94.08  E-value=10  Score=40.94  Aligned_cols=222  Identities=11%  Similarity=0.110  Sum_probs=101.3

Q ss_pred             CCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcc-eeeeccCC----CCCeEEEEEcCCCCcEEEEEeCCCeEEEEeC
Q 047260          548 HKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNF-CSQAYTGH----SSPIMSLDFHPKKTDLFCFCDNDNEIQYWSI  622 (784)
Q Consensus       548 h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~-~~~~~~~h----~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl  622 (784)
                      -...+.+|.|..+..-+++| ..+.|  +...++.. -.......    .-...+|.|..+  ..+++|. .+.| +...
T Consensus        15 t~~~l~dV~F~d~~~G~~VG-~~g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~--~g~ivG~-~g~l-l~T~   87 (302)
T PF14870_consen   15 TDKPLLDVAFVDPNHGWAVG-AYGTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN--EGWIVGE-PGLL-LHTT   87 (302)
T ss_dssp             -SS-EEEEEESSSS-EEEEE-TTTEE--EEESSTTSS-EE-----S-----EEEEEEEETT--EEEEEEE-TTEE-EEES
T ss_pred             CCCceEEEEEecCCEEEEEe-cCCEE--EEECCCCccccccccCCCccceeeEEEEEecCC--ceEEEcC-CceE-EEec
Confidence            34588999999555555555 45543  33333221 11111111    123667777643  3555554 4433 3333


Q ss_pred             CCCe---eEEe---ecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEE-EEEeCCCCCEEEEEEcCCCCEEEEEeCC
Q 047260          623 NPFL---CTHI---TKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQT-HSLQGHAELVNYICWDTNGDYLASVSQN  695 (784)
Q Consensus       623 ~~~~---~~~~---~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i-~~l~~h~~~V~sl~~spdg~~Lasgsdd  695 (784)
                      +.+.   .+..   ..+....+....++ ...+++..|.|+.-. ..++.- .....-.+.+..+.-+++|++++++..+
T Consensus        88 DgG~tW~~v~l~~~lpgs~~~i~~l~~~-~~~l~~~~G~iy~T~-DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G  165 (302)
T PF14870_consen   88 DGGKTWERVPLSSKLPGSPFGITALGDG-SAELAGDRGAIYRTT-DGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRG  165 (302)
T ss_dssp             STTSS-EE----TT-SS-EEEEEEEETT-EEEEEETT--EEEES-STTSSEEEEE-S----EEEEEE-TTS-EEEEETTS
T ss_pred             CCCCCcEEeecCCCCCCCeeEEEEcCCC-cEEEEcCCCcEEEeC-CCCCCeeEcccCCcceeEeEEECCCCcEEEEECcc
Confidence            3222   2211   12333334433333 344444445443221 122222 2233455778888899999999999988


Q ss_pred             -eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEEC-CCCceEE---ec--ccCCceEEEEEeCCC
Q 047260          696 -LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNM-AENKSMT---IA--AHENIISALAQSPVT  768 (784)
Q Consensus       696 -~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl-~~~~~~~---~~--~h~~~V~slafspdg  768 (784)
                       ...-||--...-...-......|..+.|.|++...+ .+..|.|++=+. ...+...   ..  ...-.+..++|.+++
T Consensus       166 ~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~-~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~  244 (302)
T PF14870_consen  166 NFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWM-LARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPN  244 (302)
T ss_dssp             SEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEE-EETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS
T ss_pred             cEEEEecCCCccceEEccCccceehhceecCCCCEEE-EeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCC
Confidence             666787653322222233457899999999977544 557788887762 2222211   11  122238899999988


Q ss_pred             CEEEEEECCCcE
Q 047260          769 GMVASASHDSSV  780 (784)
Q Consensus       769 ~~LaSgs~DG~V  780 (784)
                      ...++|+. |.+
T Consensus       245 ~~wa~gg~-G~l  255 (302)
T PF14870_consen  245 EIWAVGGS-GTL  255 (302)
T ss_dssp             -EEEEEST-T-E
T ss_pred             CEEEEeCC-ccE
Confidence            77776654 444

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=94.07  E-value=0.077  Score=62.59  Aligned_cols=118  Identities=20%  Similarity=0.343  Sum_probs=75.4

Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEE-----------EccCCCEEEEEeCCCeEEEEcC
Q 047260          510 VTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVR-----------FRPNSSQLATASVDKSVRLWDA  578 (784)
Q Consensus       510 V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~-----------fspdg~~Latgs~Dg~I~IWdl  578 (784)
                      |.-|-|-++.-++..+-.++.|++.++++... ..+.+|...+++++           .+|||+.|+.++.||.++.|-+
T Consensus       186 V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi  264 (1283)
T KOG1916|consen  186 VSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI  264 (1283)
T ss_pred             eeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence            33333444667888888899999888775433 45566877666655           4789999999999999998876


Q ss_pred             CCCc----ceeeeccCCC-CCeEEEEEcCCC---------CcEEEEEeCCCeEEEEeCCCCeeE
Q 047260          579 ANPN----FCSQAYTGHS-SPIMSLDFHPKK---------TDLFCFCDNDNEIQYWSINPFLCT  628 (784)
Q Consensus       579 ~~~~----~~~~~~~~h~-~~V~sl~~sp~~---------~~ll~sgs~dg~I~iwDl~~~~~~  628 (784)
                      .-..    .|....+.|+ .+-.|..|+...         ..+|-+.+.+..+++|.....+|.
T Consensus       265 yi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  265 YITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             eeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence            4211    2444555666 333333343321         112333445678999988887776

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=93.98  E-value=2.9  Score=48.05  Aligned_cols=144  Identities=15%  Similarity=0.321  Sum_probs=89.5

Q ss_pred             CCeEEEEEccCCCEEE-EEe--CCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCC----CCcEEEEEeCCCeEEEEeC
Q 047260          550 SVVTDVRFRPNSSQLA-TAS--VDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPK----KTDLFCFCDNDNEIQYWSI  622 (784)
Q Consensus       550 ~~It~i~fspdg~~La-tgs--~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~----~~~ll~sgs~dg~I~iwDl  622 (784)
                      .+|..++|. ||+.++ |.-  .+|.+++=|-.        ..|.-..|..+.|.|-    ...+++ ......|.||.+
T Consensus        20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds~--------viGqFEhV~GlsW~P~~~~~~paLLA-VQHkkhVtVWqL   89 (671)
T PF15390_consen   20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDSK--------VIGQFEHVHGLSWAPPCTADTPALLA-VQHKKHVTVWQL   89 (671)
T ss_pred             ccccceEec-CCCEEEEEeeeeeCCccccCCcc--------EeeccceeeeeeecCcccCCCCceEE-EeccceEEEEEe
Confidence            478889997 565444 332  23444433321        1233456999999985    334554 445889999988


Q ss_pred             CC-----CeeEE----eecC----CeeEEEEecCCCEEEEEECCCcEEEEECCCC--eEEEEEeCCCCCEEEEEEcCCCC
Q 047260          623 NP-----FLCTH----ITKG----GTAQVRFQPRIGQLLAAASDKVVSIFDIETD--RQTHSLQGHAELVNYICWDTNGD  687 (784)
Q Consensus       623 ~~-----~~~~~----~~~~----~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~--~~i~~l~~h~~~V~sl~~spdg~  687 (784)
                      ..     .+.+.    .+..    -...+.|+|....|.+-.....=.+++++..  +....+ ...+.|.|.||.+||.
T Consensus        90 ~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~  168 (671)
T PF15390_consen   90 CPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQ  168 (671)
T ss_pred             ccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCC
Confidence            52     11111    1111    1234679999888877776555556666543  222233 3678899999999999


Q ss_pred             EEEEEeCC--eEEEEeCCC
Q 047260          688 YLASVSQN--LVKVWSMAS  704 (784)
Q Consensus       688 ~Lasgsdd--~I~IwDl~t  704 (784)
                      .|+++-..  .-+|||-..
T Consensus       169 RLVVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  169 RLVVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             EEEEEeCCeEEEEEecCch
Confidence            88887655  778998643

>PLN02153 epithiospecifier protein

Probab=93.89  E-value=8.5  Score=42.25  Aligned_cols=83  Identities=7%  Similarity=-0.017  Sum_probs=39.4

Q ss_pred             eEEEEeCCCCceEEEec---cCCCceEEEEEecCCCEEEEEECC--------------CeEEEEECCCCceEEecc----
Q 047260          696 LVKVWSMASGECIQELS---SNGNQFHSCVFHPSYSTLLVVGGI--------------SSLELWNMAENKSMTIAA----  754 (784)
Q Consensus       696 ~I~IwDl~t~~~i~~l~---~~~~~I~sl~fspdg~~L~s~s~d--------------g~I~Iwdl~~~~~~~~~~----  754 (784)
                      .|.+||+.+.+-...-.   .........+...++..++.|+..              ..|..||+.+..-..+..    
T Consensus       218 ~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~  297 (341)
T PLN02153        218 AVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEP  297 (341)
T ss_pred             ceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCC
Confidence            68889988764332211   011111111222345566666641              257888887765443321    


Q ss_pred             --cCCc--eEEEEEeCCCCEEEEEECCC
Q 047260          755 --HENI--ISALAQSPVTGMVASASHDS  778 (784)
Q Consensus       755 --h~~~--V~slafspdg~~LaSgs~DG  778 (784)
                        ....  ..++.+.-++++++.|+.++
T Consensus       298 ~~pr~~~~~~~~~v~~~~~~~~~gG~~~  325 (341)
T PLN02153        298 AMPRGWTAYTTATVYGKNGLLMHGGKLP  325 (341)
T ss_pred             CCCCccccccccccCCcceEEEEcCcCC
Confidence              1111  12333344456777776643

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.13  E-value=0.69  Score=56.37  Aligned_cols=141  Identities=9%  Similarity=0.021  Sum_probs=85.5

Q ss_pred             CeeEEEEecCCCEEEEEEC--CCcEEEEECCCCeEEE-----EEe------CCCCCEEEEEEcCCCC--EEEEEeCCeEE
Q 047260          634 GTAQVRFQPRIGQLLAAAS--DKVVSIFDIETDRQTH-----SLQ------GHAELVNYICWDTNGD--YLASVSQNLVK  698 (784)
Q Consensus       634 ~v~~v~fsp~~~~Ll~~s~--Dg~I~IwDl~t~~~i~-----~l~------~h~~~V~sl~~spdg~--~Lasgsdd~I~  698 (784)
                      .+..+...+|+...++...  +-.|..||+++-..-.     -+.      ....-..++.|.|.-.  .+++-.+..|+
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~  181 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR  181 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence            3444445555554444433  3478889987532111     111      1223456778887543  33444455788


Q ss_pred             EEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceEEec----ccCCceEEEEEeCCCCEEEEE
Q 047260          699 VWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIA----AHENIISALAQSPVTGMVASA  774 (784)
Q Consensus       699 IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~~----~h~~~V~slafspdg~~LaSg  774 (784)
                      |..+.--....+--......++++|+|.|+.+++|-..|++.-|...-.....+.    .....|.+|+|-....++|+-
T Consensus       182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy  261 (1405)
T KOG3630|consen  182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVY  261 (1405)
T ss_pred             hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEEEe
Confidence            8776543322222233466899999999999999999999998876554333222    125789999999877766654

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=92.71  E-value=0.31  Score=37.06  Aligned_cols=31  Identities=19%  Similarity=0.247  Sum_probs=28.6

Q ss_pred             CCCeEEEEEccCCCEEEEEeCCCeEEEEcCC
Q 047260          549 KSVVTDVRFRPNSSQLATASVDKSVRLWDAA  579 (784)
Q Consensus       549 ~~~It~i~fspdg~~Latgs~Dg~I~IWdl~  579 (784)
                      ...|.+++|+|..++||.++.||.|.||.+.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            4569999999999999999999999999984

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.65  E-value=3.2  Score=52.09  Aligned_cols=228  Identities=13%  Similarity=0.065  Sum_probs=114.2

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCC-CCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCccee
Q 047260          507 NSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHK-SVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCS  585 (784)
Q Consensus       507 ~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~-~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~  585 (784)
                      ......++|+|.-.++|.+..+|.|++|-..--+.......-. ..+..+.|-.....+.....+..+.+|.......+ 
T Consensus        35 ~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~-  113 (993)
T KOG1983|consen   35 PSTPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKTGV-  113 (993)
T ss_pred             CCCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeeccccccee-
Confidence            3456778999999999999999999999866433332221111 12233333222223344445566677766543311 


Q ss_pred             eeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEe----ecCCeeEE-EEecCCCEEEEEECCCcEEEEE
Q 047260          586 QAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHI----TKGGTAQV-RFQPRIGQLLAAASDKVVSIFD  660 (784)
Q Consensus       586 ~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~----~~~~v~~v-~fsp~~~~Ll~~s~Dg~I~IwD  660 (784)
                          .+...+++....  ..-.++.+ ..+.+++||.........    ........ ...+..-.+..--.+-.-.++-
T Consensus       114 ----~~~~~~~~~~~~--~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~  186 (993)
T KOG1983|consen  114 ----FLKQEITSFVTD--PPPDWLIG-ENGLVKVSDVLRHQLSDLKYAGTESSNFVPYESLSPTLSIEGLVIDLDTVLIS  186 (993)
T ss_pred             ----ecCCcceeccCC--CCcchhcc-cCceeeEeeechhhhccceeccccccccceeeeeccceeeeccccccccceee
Confidence                112233333322  22122334 788888888753211111    11110000 0000000000000010111111


Q ss_pred             CCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEE
Q 047260          661 IETDRQTHSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLE  740 (784)
Q Consensus       661 l~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~  740 (784)
                      +....  ..+..+..++.+..+.....++.....+.+.+|+.........+.....     .+..++..++++..||.+.
T Consensus       187 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~v~~h~Dgs~~  259 (993)
T KOG1983|consen  187 LPDAY--LGLSLIEYESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLPNGQ-----LESRDGSHFVSYHTDGSYA  259 (993)
T ss_pred             ccccc--ccccccccccceeeeecCCCcceeeeeeeeeehhcccccchhhcccccc-----cCccCCceEEEEEecCCEE
Confidence            11001  1222355566666666666666666667777777665444434332222     2278889999999999999


Q ss_pred             EEECCCCce
Q 047260          741 LWNMAENKS  749 (784)
Q Consensus       741 Iwdl~~~~~  749 (784)
                      +||...++.
T Consensus       260 fWd~s~g~~  268 (993)
T KOG1983|consen  260 FWDVSSGKL  268 (993)
T ss_pred             eeecCCCce
Confidence            999998744

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=92.57  E-value=16  Score=39.20  Aligned_cols=159  Identities=12%  Similarity=0.126  Sum_probs=88.0

Q ss_pred             eEEEEeCCCCeeEEeec---------CCeeEEEEecCC-----CEEEEEEC-CCcEEEEECCCCeEEEEEeCC-------
Q 047260          616 EIQYWSINPFLCTHITK---------GGTAQVRFQPRI-----GQLLAAAS-DKVVSIFDIETDRQTHSLQGH-------  673 (784)
Q Consensus       616 ~I~iwDl~~~~~~~~~~---------~~v~~v~fsp~~-----~~Ll~~s~-Dg~I~IwDl~t~~~i~~l~~h-------  673 (784)
                      .|.+||+.+.+.++.+.         .....+++....     .+++.+.. .+.|.|+|+.+++..+.+..+       
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~  114 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA  114 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred             EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence            34455555554443332         345667776632     35555555 478999999998876655421       


Q ss_pred             ------------CCCEEEEEEcC---CCCEEEEEeCCeEEEEeCCC-----C---------ceEEEeccCCCceEEEEEe
Q 047260          674 ------------AELVNYICWDT---NGDYLASVSQNLVKVWSMAS-----G---------ECIQELSSNGNQFHSCVFH  724 (784)
Q Consensus       674 ------------~~~V~sl~~sp---dg~~Lasgsdd~I~IwDl~t-----~---------~~i~~l~~~~~~I~sl~fs  724 (784)
                                  ...+..++.+|   +++.|.-..-...++|.+.+     .         +.+..+-........++++
T Consensus       115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D  194 (287)
T PF03022_consen  115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAID  194 (287)
T ss_dssp             EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEE
T ss_pred             cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEEC
Confidence                        11255556654   56666655533333343321     1         1122222222456778899


Q ss_pred             cCCCEEEEEECCCeEEEEECCCC----ceEEec--cc-CCceEEEEEeC--CCCEEEEE
Q 047260          725 PSYSTLLVVGGISSLELWNMAEN----KSMTIA--AH-ENIISALAQSP--VTGMVASA  774 (784)
Q Consensus       725 pdg~~L~s~s~dg~I~Iwdl~~~----~~~~~~--~h-~~~V~slafsp--dg~~LaSg  774 (784)
                      ++|..+++--..+.|..|+..+.    ....+.  .. -..+.++.+.+  ++.+.+.+
T Consensus       195 ~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s  253 (287)
T PF03022_consen  195 PNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS  253 (287)
T ss_dssp             TTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred             CCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence            99887888888889999998872    211221  22 34678999998  77766654

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=92.50  E-value=28  Score=41.37  Aligned_cols=120  Identities=16%  Similarity=0.220  Sum_probs=68.2

Q ss_pred             eecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCe--EEEEEeC-CCCCEEEEEEcC------CCCEEEEEeC---C--
Q 047260          630 ITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDR--QTHSLQG-HAELVNYICWDT------NGDYLASVSQ---N--  695 (784)
Q Consensus       630 ~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~--~i~~l~~-h~~~V~sl~~sp------dg~~Lasgsd---d--  695 (784)
                      ..+..+..+.|..++..+++...+|.|.+||...+.  .+..+.. +...+.--+|-+      ...++++.++   +  
T Consensus       127 kl~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~  206 (670)
T PF10395_consen  127 KLDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKL  206 (670)
T ss_pred             EcccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcE
Confidence            456788899999999999999999999999993322  1112221 222111112222      2334444332   2  


Q ss_pred             eEEEEeCC-CCceEEEec---cCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE
Q 047260          696 LVKVWSMA-SGECIQELS---SNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM  750 (784)
Q Consensus       696 ~I~IwDl~-t~~~i~~l~---~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~  750 (784)
                      ..+++.+. ....+.++.   .+......+.|+-....|+.- .+++|.+|++...+..
T Consensus       207 ~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~  264 (670)
T PF10395_consen  207 SYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQ  264 (670)
T ss_pred             EEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEE
Confidence            78889882 223333442   222333444444433344444 6779999999776544

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>PHA02790 Kelch-like protein; Provisional

Probab=92.39  E-value=5.8  Score=45.94  Aligned_cols=141  Identities=7%  Similarity=0.006  Sum_probs=66.4

Q ss_pred             CCCEEEEEeCCC-----eEEEEECCCCceeee--cCCCCCCeEEEEEccCCCEEEEEeCC--CeEEEEcCCCCcceee-e
Q 047260          518 DGKLLASSGHDR-----KVVLWNMDTLQTEST--PEDHKSVVTDVRFRPNSSQLATASVD--KSVRLWDAANPNFCSQ-A  587 (784)
Q Consensus       518 dg~~Lasgs~Dg-----~I~IWd~~t~~~~~~--l~~h~~~It~i~fspdg~~Latgs~D--g~I~IWdl~~~~~~~~-~  587 (784)
                      ++.++++||.++     .+..||..+.+-...  +.........+.  -++.+.+.|+.+  ..+..||..++..... .
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~  348 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS  348 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence            355667776543     477788776543222  211111122222  367777777754  3577888766543211 1


Q ss_pred             ccCCCCCeEEEEEcCCCCcEEEEEeCCC---eEEEEeCCCCeeEEeec--CCeeEEEEecCCCEEEEEECCCcEEEEECC
Q 047260          588 YTGHSSPIMSLDFHPKKTDLFCFCDNDN---EIQYWSINPFLCTHITK--GGTAQVRFQPRIGQLLAAASDKVVSIFDIE  662 (784)
Q Consensus       588 ~~~h~~~V~sl~~sp~~~~ll~sgs~dg---~I~iwDl~~~~~~~~~~--~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~  662 (784)
                      +.........+.+   +..+++.|+.++   .+..||.++..-.....  .+........-++.|++.+  |.+.+||.+
T Consensus       349 l~~~r~~~~~~~~---~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G--G~~e~ydp~  423 (480)
T PHA02790        349 LLKPRCNPAVASI---NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG--RNAEFYCES  423 (480)
T ss_pred             CCCCCcccEEEEE---CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC--CceEEecCC
Confidence            1111111112222   234777776543   46778877644433221  1111111111234444444  457788887


Q ss_pred             CCe
Q 047260          663 TDR  665 (784)
Q Consensus       663 t~~  665 (784)
                      +.+
T Consensus       424 ~~~  426 (480)
T PHA02790        424 SNT  426 (480)
T ss_pred             CCc
Confidence            653

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=92.25  E-value=3.8  Score=38.40  Aligned_cols=110  Identities=15%  Similarity=0.145  Sum_probs=68.4

Q ss_pred             EEecCCCEEEEEECCCcEEEEECCCC--------eEEEEEeCCCCCEEEEEEcC-----CCCEEEEEeCCeEEEEeCCCC
Q 047260          639 RFQPRIGQLLAAASDKVVSIFDIETD--------RQTHSLQGHAELVNYICWDT-----NGDYLASVSQNLVKVWSMASG  705 (784)
Q Consensus       639 ~fsp~~~~Ll~~s~Dg~I~IwDl~t~--------~~i~~l~~h~~~V~sl~~sp-----dg~~Lasgsdd~I~IwDl~t~  705 (784)
                      +|......|++++..|.|.|++....        ..+..+. -...|++++-.+     +...|+.|+...|.+||+...
T Consensus         5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N   83 (136)
T PF14781_consen    5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENN   83 (136)
T ss_pred             EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcccC
Confidence            34444455677777777777765432        2233333 455677765433     456899999999999999877


Q ss_pred             ceEEEeccCCCceEEEEEe---cCCCEEEEEECCCeEEEEECCCCceE
Q 047260          706 ECIQELSSNGNQFHSCVFH---PSYSTLLVVGGISSLELWNMAENKSM  750 (784)
Q Consensus       706 ~~i~~l~~~~~~I~sl~fs---pdg~~L~s~s~dg~I~Iwdl~~~~~~  750 (784)
                      ..+.--.. ...|+++.+-   ....-++..+.+..|.-||....+.+
T Consensus        84 ~d~Fyke~-~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~f  130 (136)
T PF14781_consen   84 SDLFYKEV-PDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIF  130 (136)
T ss_pred             chhhhhhC-ccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEE
Confidence            65443322 2556666653   22234677777778888887766654

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=92.12  E-value=26  Score=40.82  Aligned_cols=221  Identities=14%  Similarity=0.139  Sum_probs=112.1

Q ss_pred             ccCCCEEEEEeCCCeEEEEcCCCCcc-eeeeccCC-CCCeEEEEEcCCCCcEEEEEeC--CCeEEEEeCCCCeeEEeec-
Q 047260          558 RPNSSQLATASVDKSVRLWDAANPNF-CSQAYTGH-SSPIMSLDFHPKKTDLFCFCDN--DNEIQYWSINPFLCTHITK-  632 (784)
Q Consensus       558 spdg~~Latgs~Dg~I~IWdl~~~~~-~~~~~~~h-~~~V~sl~~sp~~~~ll~sgs~--dg~I~iwDl~~~~~~~~~~-  632 (784)
                      ..++..++.+..+|.+....+..... ......+. .....++++..++..+++.|+.  |+.+..|.....+.+..+. 
T Consensus       219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~N  298 (504)
T PF10433_consen  219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLPN  298 (504)
T ss_dssp             STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE--
T ss_pred             cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEeccC
Confidence            34677899999999998887765331 12222232 5566778887776445666654  5566666655556665555 


Q ss_pred             -CCeeEEEEecC----CC------EEEEEEC---CCcEEEEECCCCeE--EEEEeCCC--CCEEEEEEcC-CCCEEEEEe
Q 047260          633 -GGTAQVRFQPR----IG------QLLAAAS---DKVVSIFDIETDRQ--THSLQGHA--ELVNYICWDT-NGDYLASVS  693 (784)
Q Consensus       633 -~~v~~v~fsp~----~~------~Ll~~s~---Dg~I~IwDl~t~~~--i~~l~~h~--~~V~sl~~sp-dg~~Lasgs  693 (784)
                       +++.++++...    ..      .+++++.   +|.|+++.---+-.  ........  ..+..+.... ++.||+.+.
T Consensus       299 ~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~  378 (504)
T PF10433_consen  299 WGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVLSF  378 (504)
T ss_dssp             --SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEEEE
T ss_pred             cCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceEEEEEc
Confidence             78888887532    22      6666664   68888874322111  11122122  2333333222 256888877


Q ss_pred             CCeEEEEeCC---CCceEEEec-----cCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceEE-e-cccCCceEEEE
Q 047260          694 QNLVKVWSMA---SGECIQELS-----SNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMT-I-AAHENIISALA  763 (784)
Q Consensus       694 dd~I~IwDl~---t~~~i~~l~-----~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~-~-~~h~~~V~sla  763 (784)
                      .+.-+|+.+.   ..+.+.++.     .....+.+..+.  +..++=.+.. .|++.+....+... + ......|.+.+
T Consensus       379 ~~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~~-~i~l~~~~~~~~~~~w~~~~~~~I~~a~  455 (504)
T PF10433_consen  379 PNETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTPK-GIRLIDLEDGKLTQEWKPPAGSIIVAAS  455 (504)
T ss_dssp             SSEEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEESS-EEEEEESSSTSEEEEEE-TTS---SEEE
T ss_pred             CCceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEecC-eEEEEECCCCeEEEEEeCCCCCeEEEEE
Confidence            7766666663   344443331     112223222222  4455555554 48888877766652 2 22344455555


Q ss_pred             EeCCCCEEEEEECCCcEEEe
Q 047260          764 QSPVTGMVASASHDSSVKLW  783 (784)
Q Consensus       764 fspdg~~LaSgs~DG~V~IW  783 (784)
                      +.  +.+++.+-.++.+.++
T Consensus       456 ~~--~~~v~v~~~~~~~~~~  473 (504)
T PF10433_consen  456 IN--DPQVLVALSGGELVYF  473 (504)
T ss_dssp             ES--SSEEEEEE-TTEEEEE
T ss_pred             EC--CCEEEEEEeCCcEEEE
Confidence            44  3455555556666554

...

>PHA02790 Kelch-like protein; Provisional

Probab=91.92  E-value=8.7  Score=44.49  Aligned_cols=139  Identities=6%  Similarity=-0.036  Sum_probs=65.5

Q ss_pred             CcEEEEEeCC--CeEEEEeCCCCeeEEe--ecCCeeE-EEEecCCCEEEEEECC---CcEEEEECCCCeEEEE--EeCCC
Q 047260          605 TDLFCFCDND--NEIQYWSINPFLCTHI--TKGGTAQ-VRFQPRIGQLLAAASD---KVVSIFDIETDRQTHS--LQGHA  674 (784)
Q Consensus       605 ~~ll~sgs~d--g~I~iwDl~~~~~~~~--~~~~v~~-v~fsp~~~~Ll~~s~D---g~I~IwDl~t~~~i~~--l~~h~  674 (784)
                      ..+++.|+.+  ..+..||.....-...  ...+... ....-++...++|+.+   ..+..||.++.+-...  +....
T Consensus       319 ~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r  398 (480)
T PHA02790        319 NKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPH  398 (480)
T ss_pred             CEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcc
Confidence            4466777643  3577788765433222  1112211 1223345555666654   3577888876542221  11111


Q ss_pred             CCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceE--EEeccCCCceEEEEEecCCCEEEEEECC-----CeEEEEECCCC
Q 047260          675 ELVNYICWDTNGDYLASVSQNLVKVWSMASGECI--QELSSNGNQFHSCVFHPSYSTLLVVGGI-----SSLELWNMAEN  747 (784)
Q Consensus       675 ~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i--~~l~~~~~~I~sl~fspdg~~L~s~s~d-----g~I~Iwdl~~~  747 (784)
                      ... +++ .-++++.+.|+  .+.+||..+.+-.  ..+....... +++ .-+++..++||.+     ..|.+||..++
T Consensus       399 ~~~-~~~-~~~~~IYv~GG--~~e~ydp~~~~W~~~~~m~~~r~~~-~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~  472 (480)
T PHA02790        399 YKS-CAL-VFGRRLFLVGR--NAEFYCESSNTWTLIDDPIYPRDNP-ELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTY  472 (480)
T ss_pred             ccc-eEE-EECCEEEEECC--ceEEecCCCCcEeEcCCCCCCcccc-EEE-EECCEEEEECCcCCCcccceEEEEECCCC
Confidence            111 121 23566666553  4677888765432  2222111222 222 2355555666543     35777777665


Q ss_pred             ce
Q 047260          748 KS  749 (784)
Q Consensus       748 ~~  749 (784)
                      +-
T Consensus       473 ~W  474 (480)
T PHA02790        473 SW  474 (480)
T ss_pred             eE
Confidence            43

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=91.66  E-value=11  Score=38.29  Aligned_cols=101  Identities=16%  Similarity=0.237  Sum_probs=62.8

Q ss_pred             CEEEEEeCCCeEEEEECC--CCceeeecCCCCCCeEEEEEccCCCEEEEEeCC---C---eEEEE---cCC-CC-cceee
Q 047260          520 KLLASSGHDRKVVLWNMD--TLQTESTPEDHKSVVTDVRFRPNSSQLATASVD---K---SVRLW---DAA-NP-NFCSQ  586 (784)
Q Consensus       520 ~~Lasgs~Dg~I~IWd~~--t~~~~~~l~~h~~~It~i~fspdg~~Latgs~D---g---~I~IW---dl~-~~-~~~~~  586 (784)
                      +.|+.+...++|.+|++.  .......+. .-+.|..+.++..|+||+|--.+   .   .+|+|   +.. .. .....
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v  107 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV  107 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence            455555667789999988  445555554 44889999999999999996432   2   56664   322 11 11111


Q ss_pred             eccC---------------------CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCC
Q 047260          587 AYTG---------------------HSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSIN  623 (784)
Q Consensus       587 ~~~~---------------------h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~  623 (784)
                      ...|                     -...+.+++..|...++++.+  ++.+.+|.+.
T Consensus       108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~  163 (215)
T PF14761_consen  108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC--GNKLVLFTLK  163 (215)
T ss_pred             EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc--CCEEEEEEEE
Confidence            1112                     134567777777666676654  6678888664

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=91.64  E-value=21  Score=42.44  Aligned_cols=163  Identities=12%  Similarity=0.147  Sum_probs=93.1

Q ss_pred             CCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCccee--eeccCCCCCeEEEEEcC------CCCcEEEEEe-CC--Ce
Q 047260          548 HKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCS--QAYTGHSSPIMSLDFHP------KKTDLFCFCD-ND--NE  616 (784)
Q Consensus       548 h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~--~~~~~h~~~V~sl~~sp------~~~~ll~sgs-~d--g~  616 (784)
                      -.+.|..|.|.++++.+++...+|.|.+||........  ..-..+...+.--+|-+      ....+++.+. .+  -.
T Consensus       128 l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~  207 (670)
T PF10395_consen  128 LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLS  207 (670)
T ss_pred             cccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEE
Confidence            36789999999999999999999999999993322111  11111222111112222      2334444454 22  35


Q ss_pred             EEEEeC--CCCeeEEee----c-CCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCC-----C-CCEEEEEEc
Q 047260          617 IQYWSI--NPFLCTHIT----K-GGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGH-----A-ELVNYICWD  683 (784)
Q Consensus       617 I~iwDl--~~~~~~~~~----~-~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h-----~-~~V~sl~~s  683 (784)
                      .+++.+  +...+....    . .......|.-..+.|+.- .++.|.+|++...+..+++.-.     . ..+.++. .
T Consensus       208 ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~-~  285 (670)
T PF10395_consen  208 YKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLK-P  285 (670)
T ss_pred             EEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEEEEEEechhhccccccceEee-c
Confidence            677777  322222221    1 122233333334444444 7789999999888766665421     1 2333443 2


Q ss_pred             CCCCEEEEEeCCeEEEEeCCCCceEEEec
Q 047260          684 TNGDYLASVSQNLVKVWSMASGECIQELS  712 (784)
Q Consensus       684 pdg~~Lasgsdd~I~IwDl~t~~~i~~l~  712 (784)
                      |..+.+..+.++.|++.|+.-...+.++.
T Consensus       286 ~s~nRvLLs~~nkIyLld~~~~siLse~~  314 (670)
T PF10395_consen  286 PSPNRVLLSVNNKIYLLDLKFESILSEFE  314 (670)
T ss_pred             CCCCeEEEEcCCEEEEEeehhhhhhhhhh
Confidence            45556666778899999998776666554

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=91.23  E-value=0.072  Score=64.00  Aligned_cols=70  Identities=19%  Similarity=0.098  Sum_probs=40.3

Q ss_pred             cccCCCCchhhhhhhhcccccccccccccccccccccCCCCCCccccccccccccccCCcCCCCCCCCcccCCCCCCC
Q 047260          181 AQGSSGNISAAMQRIQGRTTLTSDIKSEANLGATQKSLPMDPSSMYGQAMFQPKSVLGSSGLNQGVAGLPLKGWPLIG  258 (784)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (784)
                      -|.++-+.+..-++-+.-.-||.-|-+--|+...|.-++|-.+.--||.++     -|   .--|-+.+-|||||-+-
T Consensus      1754 n~s~s~n~~~~e~~q~~~~sql~i~ss~p~~~ssp~~a~~iss~~v~qps~-----~~---~~~g~ss~~~~~~~p~s 1823 (2131)
T KOG4369|consen 1754 NNSNSKNDSSNEWGQNEFISQLLINSSLPNATSSPQGASTISSAPVQQPST-----SS---VTTGLSSLELKGWMPAS 1823 (2131)
T ss_pred             cCCCCCchhhhhhhccchhhhheeeccCCCCCCCCCCCccccccccCCCcc-----cc---ccccccchhhcCCCCcc
Confidence            355566666544443333334434445556555555555555555566655     22   22578999999999873

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=90.89  E-value=24  Score=37.25  Aligned_cols=236  Identities=11%  Similarity=0.033  Sum_probs=147.4

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeec
Q 047260          509 KVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAY  588 (784)
Q Consensus       509 ~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~  588 (784)
                      .-..++-.|||..-+++...+.|--.|..+++....--+....-..|..-||+..-++-+.. -|.-.|-++.+.....+
T Consensus        63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~l  141 (353)
T COG4257          63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPL  141 (353)
T ss_pred             CccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeec
Confidence            35667888999988888888888888999998877766666777788888988766664333 45555655544222222


Q ss_pred             c--CCCCCeEEEEEcCCCCcEEEEEeCC---------CeEEEEeCCCCeeEEeecCCeeEEEEecCCCEEEEEECCCcEE
Q 047260          589 T--GHSSPIMSLDFHPKKTDLFCFCDND---------NEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVS  657 (784)
Q Consensus       589 ~--~h~~~V~sl~~sp~~~~ll~sgs~d---------g~I~iwDl~~~~~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~  657 (784)
                      .  .-........|.+.|. +.+++...         +.|++|+.-       .......|+..|+|...++...++.|-
T Consensus       142 p~~~a~~nlet~vfD~~G~-lWFt~q~G~yGrLdPa~~~i~vfpaP-------qG~gpyGi~atpdGsvwyaslagnaia  213 (353)
T COG4257         142 PLEHADANLETAVFDPWGN-LWFTGQIGAYGRLDPARNVISVFPAP-------QGGGPYGICATPDGSVWYASLAGNAIA  213 (353)
T ss_pred             ccccCCCcccceeeCCCcc-EEEeeccccceecCcccCceeeeccC-------CCCCCcceEECCCCcEEEEeccccceE
Confidence            1  2234567788888876 55555421         233333322       124457788999999888888888888


Q ss_pred             EEECCCCeEEEEE--eCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCce-EEEeccCCCceEEEEEecCCCEEEEE
Q 047260          658 IFDIETDRQTHSL--QGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGEC-IQELSSNGNQFHSCVFHPSYSTLLVV  733 (784)
Q Consensus       658 IwDl~t~~~i~~l--~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~-i~~l~~~~~~I~sl~fspdg~~L~s~  733 (784)
                      ..|...+.....-  .........+--+|-|+.-++.... .+.-||.....- ...+.+....-.++.+...++..++-
T Consensus       214 ridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~se  293 (353)
T COG4257         214 RIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWLSE  293 (353)
T ss_pred             EcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCcEEeec
Confidence            8887766222111  1112233445556777766664433 777777655431 22344444555677777777655555


Q ss_pred             ECCCeEEEEECCCCceEEec
Q 047260          734 GGISSLELWNMAENKSMTIA  753 (784)
Q Consensus       734 s~dg~I~Iwdl~~~~~~~~~  753 (784)
                      ...|.|.-||.++.....+.
T Consensus       294 a~agai~rfdpeta~ftv~p  313 (353)
T COG4257         294 ADAGAIGRFDPETARFTVLP  313 (353)
T ss_pred             cccCceeecCcccceEEEec
Confidence            55677888887776554443

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=90.83  E-value=27  Score=37.93  Aligned_cols=100  Identities=7%  Similarity=0.071  Sum_probs=47.1

Q ss_pred             CcEEEEEeCC-----CeEEEEeCCCCee---EEee---cCCe--eEEEEecCCCEEEEEEC-----CCcEEEEECCCCeE
Q 047260          605 TDLFCFCDND-----NEIQYWSINPFLC---THIT---KGGT--AQVRFQPRIGQLLAAAS-----DKVVSIFDIETDRQ  666 (784)
Q Consensus       605 ~~ll~sgs~d-----g~I~iwDl~~~~~---~~~~---~~~v--~~v~fsp~~~~Ll~~s~-----Dg~I~IwDl~t~~~  666 (784)
                      ..+++.|+.+     ..+..+|+.+...   ....   ..+.  .+++. -++..++.|+.     ...+..||+.+.+-
T Consensus        73 ~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W  151 (323)
T TIGR03548        73 NGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQEW  151 (323)
T ss_pred             CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCCe
Confidence            3466666654     3566677765442   1111   1111  11222 23445555553     24688899876542


Q ss_pred             E--EEEeCCCCCEEEEEEcCCCCEEEEEeCC-----eEEEEeCCCCc
Q 047260          667 T--HSLQGHAELVNYICWDTNGDYLASVSQN-----LVKVWSMASGE  706 (784)
Q Consensus       667 i--~~l~~h~~~V~sl~~spdg~~Lasgsdd-----~I~IwDl~t~~  706 (784)
                      .  ..+.. .......+..-++++.+.|+.+     .+.+||+.+.+
T Consensus       152 ~~~~~~p~-~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~  197 (323)
T TIGR03548       152 FELPDFPG-EPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ  197 (323)
T ss_pred             eECCCCCC-CCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence            2  11211 1111222223355666665532     35688888754

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=90.73  E-value=51  Score=40.81  Aligned_cols=99  Identities=11%  Similarity=0.099  Sum_probs=61.9

Q ss_pred             EEcCCCCEEEEEeCCeEEEEeCCCCceEEEeccC--CCceEEEEEecCCCEEEEEECCCeEEE--EECCCCceEEecc--
Q 047260          681 CWDTNGDYLASVSQNLVKVWSMASGECIQELSSN--GNQFHSCVFHPSYSTLLVVGGISSLEL--WNMAENKSMTIAA--  754 (784)
Q Consensus       681 ~~spdg~~Lasgsdd~I~IwDl~t~~~i~~l~~~--~~~I~sl~fspdg~~L~s~s~dg~I~I--wdl~~~~~~~~~~--  754 (784)
                      +..|...++.+|-.+.+++||+...++++.....  ...|..+.+.  +..|++|..-..|.+  |+-.++..+.+..  
T Consensus       940 Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~--~~RI~VgD~qeSV~~~~y~~~~n~l~~fadD~ 1017 (1205)
T KOG1898|consen  940 AICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY--GARIVVGDIQESVHFVRYRREDNQLIVFADDP 1017 (1205)
T ss_pred             EEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeec--ceEEEEeeccceEEEEEEecCCCeEEEEeCCC
Confidence            4557677888888889999999887766554432  3445555553  447888877665554  5555555554433  


Q ss_pred             cCCceEEEEEeCCCCEEEEEECCCcEEE
Q 047260          755 HENIISALAQSPVTGMVASASHDSSVKL  782 (784)
Q Consensus       755 h~~~V~slafspdg~~LaSgs~DG~V~I  782 (784)
                      -...|+++.+- |...+|.+..-|.+.+
T Consensus      1018 ~pR~Vt~~~~l-D~~tvagaDrfGNi~~ 1044 (1205)
T KOG1898|consen 1018 VPRHVTALELL-DYDTVAGADRFGNIAV 1044 (1205)
T ss_pred             ccceeeEEEEe-cCCceeeccccCcEEE
Confidence            23446666554 4446776766666654

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=90.54  E-value=9.2  Score=45.38  Aligned_cols=103  Identities=17%  Similarity=0.230  Sum_probs=63.1

Q ss_pred             EEEEecCCCEEEEEECCC-----cEEEEECCC---CeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceE
Q 047260          637 QVRFQPRIGQLLAAASDK-----VVSIFDIET---DRQTHSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECI  708 (784)
Q Consensus       637 ~v~fsp~~~~Ll~~s~Dg-----~I~IwDl~t---~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i  708 (784)
                      .+.|-|.|..+++-..||     .|.+|....   |+.-.. .+....+..++|+-....++.+..+.|.+|-..+....
T Consensus       251 ~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr-~~~dEk~~~~~wn~~s~vlav~~~n~~~lwttkNyhWY  329 (1243)
T COG5290         251 QLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLR-VGCDEKAFLENWNLLSTVLAVAEGNLLKLWTTKNYHWY  329 (1243)
T ss_pred             ccccccCCceeeeeccCCCCCcceEEEEccCCcccCCcccc-CCchhhhhhhhhhHHHHHHHHhhcceEEEEEccceEEE
Confidence            478999999999887554     244443221   111001 12344567788887777788887889999998876544


Q ss_pred             EEeccCCCceEEEEEecCCCEEEEEECCCeEE
Q 047260          709 QELSSNGNQFHSCVFHPSYSTLLVVGGISSLE  740 (784)
Q Consensus       709 ~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~  740 (784)
                      ......-..+.-+.|+|....-+.-.+.+.|.
T Consensus       330 LK~e~~ip~~s~vkwhpe~~nTl~f~d~~~I~  361 (1243)
T COG5290         330 LKVERQIPGISYVKWHPEEKNTLLFRDGERIL  361 (1243)
T ss_pred             EEEeecCCCcceeeeccccCcEEEEecCCeEE
Confidence            33333334566778888766544444444443

>PLN02153 epithiospecifier protein

Probab=90.32  E-value=32  Score=37.74  Aligned_cols=63  Identities=14%  Similarity=0.203  Sum_probs=33.5

Q ss_pred             CCCEEEEEeCC-------CeEEEEECCCCceeeecCC---CCC---CeEEEEEccCCCEEEEEeCC-----CeEEEEcCC
Q 047260          518 DGKLLASSGHD-------RKVVLWNMDTLQTESTPED---HKS---VVTDVRFRPNSSQLATASVD-----KSVRLWDAA  579 (784)
Q Consensus       518 dg~~Lasgs~D-------g~I~IWd~~t~~~~~~l~~---h~~---~It~i~fspdg~~Latgs~D-----g~I~IWdl~  579 (784)
                      ++++++.|+.+       ..+.+||+.+.+-......   ...   ....+.+  ++++++.|+.+     ..+.+||+.
T Consensus        32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~  109 (341)
T PLN02153         32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTV  109 (341)
T ss_pred             CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECC
Confidence            45566666653       3578888876543221110   000   1222333  56677777753     257788887


Q ss_pred             CCc
Q 047260          580 NPN  582 (784)
Q Consensus       580 ~~~  582 (784)
                      +..
T Consensus       110 t~~  112 (341)
T PLN02153        110 KNE  112 (341)
T ss_pred             CCE
Confidence            755

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.31  E-value=2.6  Score=47.58  Aligned_cols=27  Identities=11%  Similarity=0.019  Sum_probs=18.1

Q ss_pred             CeeEEEEecCCCEEEEEECCCcEEEEE
Q 047260          634 GTAQVRFQPRIGQLLAAASDKVVSIFD  660 (784)
Q Consensus       634 ~v~~v~fsp~~~~Ll~~s~Dg~I~IwD  660 (784)
                      .|..+..++.|..++..+.+|.+.++=
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeL  131 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMEL  131 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEc
Confidence            355666777777777777777655543

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.16  E-value=37  Score=38.23  Aligned_cols=148  Identities=14%  Similarity=0.189  Sum_probs=87.3

Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCC---ceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcc---eee
Q 047260          513 CHFSSDGKLLASSGHDRKVVLWNMDTL---QTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNF---CSQ  586 (784)
Q Consensus       513 l~fspdg~~Lasgs~Dg~I~IWd~~t~---~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~---~~~  586 (784)
                      +-|....+.|+ +...|.+.=|-++..   .++..-....++|.+|.|++|.+.||+--.|++|.+++....+.   ...
T Consensus        28 vFfDDaNkqlf-avrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~  106 (657)
T KOG2377|consen   28 VFFDDANKQLF-AVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQ  106 (657)
T ss_pred             eeeccCcceEE-EEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHH
Confidence            33443333333 333444555655422   22222234567999999999999999999999999998843221   112


Q ss_pred             eccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCC----CCeeEEeecCCeeEEEEecCCCEEEEEEC--CCcEEEEE
Q 047260          587 AYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSIN----PFLCTHITKGGTAQVRFQPRIGQLLAAAS--DKVVSIFD  660 (784)
Q Consensus       587 ~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~----~~~~~~~~~~~v~~v~fsp~~~~Ll~~s~--Dg~I~IwD  660 (784)
                      .....+..|...+|....+ +.+..  +.-+-+|-..    ..+.+..++..+.-..|.++.+.++.++.  .+++.=+-
T Consensus       107 ~ck~k~~~IlGF~W~~s~e-~A~i~--~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~  183 (657)
T KOG2377|consen  107 ECKTKNANILGFCWTSSTE-IAFIT--DQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFH  183 (657)
T ss_pred             HhccCcceeEEEEEecCee-EEEEe--cCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEE
Confidence            2223345688999987643 43333  3334445443    34455666677888888888777665554  44444455


Q ss_pred             CCCC
Q 047260          661 IETD  664 (784)
Q Consensus       661 l~t~  664 (784)
                      ++++
T Consensus       184 ~~~~  187 (657)
T KOG2377|consen  184 FRAG  187 (657)
T ss_pred             Eeec
Confidence            5444

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.06  E-value=23  Score=42.12  Aligned_cols=173  Identities=9%  Similarity=0.182  Sum_probs=89.0

Q ss_pred             CeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEE------eecCCeeEEEEecCC
Q 047260          571 KSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTH------ITKGGTAQVRFQPRI  644 (784)
Q Consensus       571 g~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~------~~~~~v~~v~fsp~~  644 (784)
                      -.|+||++.. ....+..-.|. ++..+.|+.+..  +++...+|.+++|++-......      .....|..+.+... 
T Consensus        64 ~~I~If~~sG-~lL~~~~w~~~-~lI~mgWs~~ee--LI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~-  138 (829)
T KOG2280|consen   64 PYIRIFNISG-QLLGRILWKHG-ELIGMGWSDDEE--LICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHN-  138 (829)
T ss_pred             eeEEEEeccc-cchHHHHhcCC-CeeeecccCCce--EEEEeccceEEEeecchhhhcccccccccccCceeEEEEecC-
Confidence            4588888763 32333333443 788999997765  4455679999999986433222      11233444444333 


Q ss_pred             CEEEEEECCCcEEEE-ECCCCeEEEEEeC-CCCCEEEEEEc--CCCC---EEEEEe-CCeEEEEeCCCC-ceEEEeccCC
Q 047260          645 GQLLAAASDKVVSIF-DIETDRQTHSLQG-HAELVNYICWD--TNGD---YLASVS-QNLVKVWSMASG-ECIQELSSNG  715 (784)
Q Consensus       645 ~~Ll~~s~Dg~I~Iw-Dl~t~~~i~~l~~-h~~~V~sl~~s--pdg~---~Lasgs-dd~I~IwDl~t~-~~i~~l~~~~  715 (784)
                      + +++-..+|.|.+. +.+. ..++++.. ......+.||.  +++.   .++-.. .....++-.... .....+....
T Consensus       139 G-Vavlt~~g~v~~i~~~~~-~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~  216 (829)
T KOG2280|consen  139 G-VAVLTVSGQVILINGVEE-PKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPN  216 (829)
T ss_pred             c-eEEEecCCcEEEEcCCCc-chhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCC
Confidence            2 3333444544443 3332 22222222 11122223332  2211   111111 001111111111 1122233334


Q ss_pred             CceEEEEEecCCCEEEEEECCCeEEEEECCCCceE
Q 047260          716 NQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM  750 (784)
Q Consensus       716 ~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~  750 (784)
                      ..+..|.++|+.++|+.-..+|.|.+-+.+..+++
T Consensus       217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~l  251 (829)
T KOG2280|consen  217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQIL  251 (829)
T ss_pred             ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhh
Confidence            67889999999999999999999999888776654

>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]

Probab=89.85  E-value=52  Score=39.49  Aligned_cols=144  Identities=13%  Similarity=0.133  Sum_probs=74.5

Q ss_pred             cCCCCCCeEEEEEccCCCEEEEEeCCCe--EEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEE-----eCCCe-
Q 047260          545 PEDHKSVVTDVRFRPNSSQLATASVDKS--VRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFC-----DNDNE-  616 (784)
Q Consensus       545 l~~h~~~It~i~fspdg~~Latgs~Dg~--I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sg-----s~dg~-  616 (784)
                      ...+...+..+.|+|++..++..+.++.  ..+|-+....    ....+...|....|++++..+++..     ..++. 
T Consensus        55 ~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~g----~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~  130 (620)
T COG1506          55 LLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVGG----LITKTAFGVSDARWSPDGDRIAFLTAEGASKRDGGD  130 (620)
T ss_pred             ccccCCcccccccCCCCCEEEEEeccCCCcceEEEEecCC----ceeeeecccccceeCCCCCeEEEEecccccccCCce
Confidence            3457788899999999999998874432  3444433221    2233445677778888777555511     11222 


Q ss_pred             ------EEEEeCCCC-------------eeEEeec--CCeeEEEEecCCCEEEEEECCCc-------EEEEECCCCeEEE
Q 047260          617 ------IQYWSINPF-------------LCTHITK--GGTAQVRFQPRIGQLLAAASDKV-------VSIFDIETDRQTH  668 (784)
Q Consensus       617 ------I~iwDl~~~-------------~~~~~~~--~~v~~v~fsp~~~~Ll~~s~Dg~-------I~IwDl~t~~~i~  668 (784)
                            +.+|.....             .......  ..+....+++++..++....+..       ..++.. ....+.
T Consensus       131 ~~~~~~~~~~~~~~g~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  209 (620)
T COG1506         131 HLFVDRLPVWFDGRGGERSDLYVVDIESKLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIE-GNGELE  209 (620)
T ss_pred             eeeecccceeecCCCCcccceEEEccCcccccccCCCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEec-CCCceE
Confidence                  222222111             1111111  23344445555555555444321       222322 233344


Q ss_pred             EEeCCCCCEEEEEEcCCCCEEEEEe
Q 047260          669 SLQGHAELVNYICWDTNGDYLASVS  693 (784)
Q Consensus       669 ~l~~h~~~V~sl~~spdg~~Lasgs  693 (784)
                      .+......+..+.|.++|+.++..+
T Consensus       210 ~~~~~~~~~~~~~~~~~gk~~~~~~  234 (620)
T COG1506         210 SLTPGEGSISKLAFDADGKSIALLG  234 (620)
T ss_pred             EEcCCCceeeeeeeCCCCCeeEEec
Confidence            4444556688889999998555543

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=89.83  E-value=12  Score=42.43  Aligned_cols=140  Identities=13%  Similarity=0.134  Sum_probs=86.8

Q ss_pred             CCCEEEE-EeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCC-------cEEEEEeCCCeEEEEeCCC-Cee--E
Q 047260          560 NSSQLAT-ASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKT-------DLFCFCDNDNEIQYWSINP-FLC--T  628 (784)
Q Consensus       560 dg~~Lat-gs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~-------~ll~sgs~dg~I~iwDl~~-~~~--~  628 (784)
                      +..+|+. |.....++--|++.++ ++..+.-|...  -+.|.|...       .-++ |-.+..|.-.|.+- +..  +
T Consensus       478 dssli~~dg~~~~kLykmDIErGk-vveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~v  553 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIERGK-VVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIKV  553 (776)
T ss_pred             CcceEEecCCCcccceeeecccce-eeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccCCceee
Confidence            4444443 4444556666777666 55555555443  466666532       1233 33455555555542 211  1


Q ss_pred             EeecCCeeEEEE----ecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCC
Q 047260          629 HITKGGTAQVRF----QPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMA  703 (784)
Q Consensus       629 ~~~~~~v~~v~f----sp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~  703 (784)
                      ...+.-.+.-.|    ....+++++++..|.|++||.-....-..+.+....|..|..+.+|+++++.+..+|.+-|++
T Consensus       554 ~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~  632 (776)
T COG5167         554 VESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVP  632 (776)
T ss_pred             eeehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEecc
Confidence            222222222222    234578999999999999996544444556677789999999999999999999999998875

>PRK05560 DNA gyrase subunit A; Validated

Probab=89.79  E-value=49  Score=40.95  Aligned_cols=223  Identities=12%  Similarity=0.035  Sum_probs=107.3

Q ss_pred             ccCCCEEEEEeCCCeEEEEcCCCCcc--------eeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeC---CCC-
Q 047260          558 RPNSSQLATASVDKSVRLWDAANPNF--------CSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSI---NPF-  625 (784)
Q Consensus       558 spdg~~Latgs~Dg~I~IWdl~~~~~--------~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl---~~~-  625 (784)
                      -++...+++-+.+|.|+--++.+...        ....+.. ...+..+........+++.. ..|.+.....   ... 
T Consensus       495 I~~E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klKe-~D~l~~~~~~~t~d~LllfT-s~Grv~~l~v~~iP~~~  572 (805)
T PRK05560        495 IPEEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTKE-DDFVEHLFVASTHDTLLFFT-NRGRVYRLKVYEIPEAS  572 (805)
T ss_pred             cCCCCEEEEEeCCCEEEEcchhhhhhhcccCCCccccccCC-CCeeEEEEEecCCCeEEEEe-cCCeEEEEEhhhCcCCC
Confidence            44667888888999998876543211        0011112 23344444444444455444 4566555543   221 


Q ss_pred             -----eeE---Eeec--CCe-eEEEEe--cCCCEEEEEECCCcEEEEECCC-------CeEEEEEeCCCCCEEEEEEcCC
Q 047260          626 -----LCT---HITK--GGT-AQVRFQ--PRIGQLLAAASDKVVSIFDIET-------DRQTHSLQGHAELVNYICWDTN  685 (784)
Q Consensus       626 -----~~~---~~~~--~~v-~~v~fs--p~~~~Ll~~s~Dg~I~IwDl~t-------~~~i~~l~~h~~~V~sl~~spd  685 (784)
                           ..+   ..+.  ..+ ..+.+.  ++...++..+.+|.++-.++..       +.....+.....-+..+....+
T Consensus       573 ~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r~G~~~ikLke~D~lv~v~~~~~~  652 (805)
T PRK05560        573 RTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRSNGIIAINLDEGDELIGVRLTDGD  652 (805)
T ss_pred             cCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcccCCceeeccCCCCEEEEEEEeCCC
Confidence                 111   1111  222 333343  2567889999999998877643       2222333333333333333334


Q ss_pred             CCEEEEEeCCeE---EEEeCCC------CceEEEeccCCCceEEE-EEecCCCEEEEEECCCeEEEEECCCC-------c
Q 047260          686 GDYLASVSQNLV---KVWSMAS------GECIQELSSNGNQFHSC-VFHPSYSTLLVVGGISSLELWNMAEN-------K  748 (784)
Q Consensus       686 g~~Lasgsdd~I---~IwDl~t------~~~i~~l~~~~~~I~sl-~fspdg~~L~s~s~dg~I~Iwdl~~~-------~  748 (784)
                      ..+++..+.+.+   .++++..      |..+..+.. +..|..+ .+.++..+++..+..|.++...+..-       +
T Consensus       653 d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~~-~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~k  731 (805)
T PRK05560        653 DDILLATKNGKAIRFPESDVRPMGRTARGVRGIKLRE-GDEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGGK  731 (805)
T ss_pred             CEEEEEECCCcEEEEEhhhcCccCcccCCcccccCCC-CCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCCC
Confidence            445555556643   3444421      223333432 2334443 44444447888888898777754321       1


Q ss_pred             -eE--EecccCCceEEEEEeCCCCEEEEEECCCcEEEe
Q 047260          749 -SM--TIAAHENIISALAQSPVTGMVASASHDSSVKLW  783 (784)
Q Consensus       749 -~~--~~~~h~~~V~slafspdg~~LaSgs~DG~V~IW  783 (784)
                       ..  .+....+.+..+........++..+.+|.+..+
T Consensus       732 G~~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~~lrf  769 (805)
T PRK05560        732 GVITIKITEKNGKLVGALPVDDDDEIMLITDSGKLIRT  769 (805)
T ss_pred             cEEeeeccCCCCeEEEEEEecCCCeEEEEecCCeEEEE
Confidence             11  222223344333333333445556667766443

>PRK13979 DNA topoisomerase IV subunit A; Provisional

Probab=89.77  E-value=65  Score=40.53  Aligned_cols=260  Identities=5%  Similarity=-0.019  Sum_probs=131.5

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCe---EEEEECCCC------ceeeecCC----CCCCeEE-EEEc--cCCCEEEEEeCCCe
Q 047260          509 KVTCCHFSSDGKLLASSGHDRK---VVLWNMDTL------QTESTPED----HKSVVTD-VRFR--PNSSQLATASVDKS  572 (784)
Q Consensus       509 ~V~~l~fspdg~~Lasgs~Dg~---I~IWd~~t~------~~~~~l~~----h~~~It~-i~fs--pdg~~Latgs~Dg~  572 (784)
                      .|..+.......+|+.-+..|.   +.+|++...      ..+..+-.    -...|.. +.+.  .+..+|+.++..|.
T Consensus       553 ~i~~~~~~~T~d~LL~FTn~Gkvy~ikvy~IPe~~~~~~G~~I~nll~~~~~~~EkIv~i~~~~ef~~~~~lv~~Tk~G~  632 (957)
T PRK13979        553 FNKFLIQSNTKDTLLIFTDKGNMYQIKGINIPEFKWKEKGERLDEIIKGIDLESEKIIEAYSIEDFTPQKDFIFITDSGG  632 (957)
T ss_pred             ceEEEEEEcCCCEEEEEECCCeEEEEEeeeCCCCCcCCCCeEHHHhhhccCCCCCeEEEEEEeccCCCCCEEEEEECCCe
Confidence            3444444444445555566665   456666543      33333321    1333433 3443  23457888999999


Q ss_pred             EEEEcCCCCc-----ceeeeccCCCCCeEEEEEcCCC--CcEEEEEeCCCeEEEEeCCCCeeEEeecCCeeEEEEecCCC
Q 047260          573 VRLWDAANPN-----FCSQAYTGHSSPIMSLDFHPKK--TDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIG  645 (784)
Q Consensus       573 I~IWdl~~~~-----~~~~~~~~h~~~V~sl~~sp~~--~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v~~v~fsp~~~  645 (784)
                      |+...+..-.     .....+. ..+.+.++.+...+  ...++..+..|.+..|+.+..........+|..+.+.++. 
T Consensus       633 VKrt~L~ef~~~r~~~~aikL~-e~DeLV~v~~~~~~~~~~~Iil~Tk~G~airF~~~eVr~mGR~a~GVkgI~L~~~D-  710 (957)
T PRK13979        633 IKKTSLDKFVTNYTKLMALKLK-KGEKLIKVKLVDRTREEKFIKIKTKKGLSFTVEEPELEPVDRNIIGYQLFDLLPND-  710 (957)
T ss_pred             EEEEehhhccccccceEEEEcC-CCCEEEEEEEcCCCCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCeeeEeeCCCC-
Confidence            9988775321     1111222 23455555555432  2355666678888888877655555555677888876543 


Q ss_pred             EEEEEEC---------------CCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC---eEEEEeCCCC--
Q 047260          646 QLLAAAS---------------DKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN---LVKVWSMASG--  705 (784)
Q Consensus       646 ~Ll~~s~---------------Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd---~I~IwDl~t~--  705 (784)
                      .++.+..               .+.+.+.|.+           ...-+.+..+....+++..+.|   .+++|++...  
T Consensus       711 ~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~i~~~T~d~Ll~FTn~Gkvy~ikv~eIPe~~~  779 (957)
T PRK13979        711 SIKKVDFCDNYEYKEFYVNINKKGIIKISDKD-----------NKSSISVFTNSSKNLLIFSDEGKVYKIPAFMLQNIKN  779 (957)
T ss_pred             EEEEEEEEhhhhhcchhhhcccccceeecccc-----------cccccceeecCCceEEEEecCCeEEEEEeeecccccc
Confidence            3333221               1333333333           2222333444445555555555   6777877652  


Q ss_pred             --ceEEEec---cCCCceEEE-EEec--CCCEEEEEECCCeEEEEECCC------C-ceEEecccCCceEEEEEeC-CCC
Q 047260          706 --ECIQELS---SNGNQFHSC-VFHP--SYSTLLVVGGISSLELWNMAE------N-KSMTIAAHENIISALAQSP-VTG  769 (784)
Q Consensus       706 --~~i~~l~---~~~~~I~sl-~fsp--dg~~L~s~s~dg~I~Iwdl~~------~-~~~~~~~h~~~V~slafsp-dg~  769 (784)
                        ..+..+.   .....|..+ .+.+  ...+|+..+..|.++-..+..      + ..+.+....+.+..+.... ++.
T Consensus       780 kG~~i~nll~~l~~~E~Ii~i~~~~~~~~~~~Ll~vTk~G~iKRt~lsef~~~rr~~~aikLke~~DeLV~v~~v~~~~~  859 (957)
T PRK13979        780 EGINISALTGDFEKDEKIIKIISIFEFEEDLSIYFFSKKGLVKKTLLNEFKGEGNSTQAYKFKHKEDELVNVDIKEHEEK  859 (957)
T ss_pred             cCcCHHHhhcccCCCCeEEEEEeecccCCCceEEEEecCCcEEEeEHHHhcccCCCeEEEEecCCCCeEEEEEEecCCCC
Confidence              1111111   112223332 3332  234688889999887765432      1 1113332334555555554 344


Q ss_pred             EEEEEECCCcEE
Q 047260          770 MVASASHDSSVK  781 (784)
Q Consensus       770 ~LaSgs~DG~V~  781 (784)
                      .|+..+.+|.+.
T Consensus       860 eIvL~T~~G~~i  871 (957)
T PRK13979        860 NILLITEKGMAI  871 (957)
T ss_pred             EEEEEECCCeEE
Confidence            555566666553

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=89.70  E-value=31  Score=37.44  Aligned_cols=107  Identities=9%  Similarity=0.162  Sum_probs=51.7

Q ss_pred             CCCEEEEEeCC-----CeEEEEECCCCce---eeecCCCCCCe--EEEEEccCCCEEEEEeC-----CCeEEEEcCCCCc
Q 047260          518 DGKLLASSGHD-----RKVVLWNMDTLQT---ESTPEDHKSVV--TDVRFRPNSSQLATASV-----DKSVRLWDAANPN  582 (784)
Q Consensus       518 dg~~Lasgs~D-----g~I~IWd~~t~~~---~~~l~~h~~~I--t~i~fspdg~~Latgs~-----Dg~I~IWdl~~~~  582 (784)
                      ++.+++.|+.+     ..+..||+.+.+.   ...+..-..+.  .+++.. ++++.+.|+.     ...+.+||+.+.+
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~-~~~iYv~GG~~~~~~~~~v~~yd~~~~~  150 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK-DGTLYVGGGNRNGKPSNKSYLFNLETQE  150 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE-CCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence            45666777754     3577777765542   12221111111  122222 5666677664     2368888988765


Q ss_pred             ceeee-ccCCCCCeEEEEEcCCCCcEEEEEeCCC----eEEEEeCCCCee
Q 047260          583 FCSQA-YTGHSSPIMSLDFHPKKTDLFCFCDNDN----EIQYWSINPFLC  627 (784)
Q Consensus       583 ~~~~~-~~~h~~~V~sl~~sp~~~~ll~sgs~dg----~I~iwDl~~~~~  627 (784)
                      ..... +... ......+..-+ ..+++.|+.++    .+.+||+.+.+-
T Consensus       151 W~~~~~~p~~-~r~~~~~~~~~-~~iYv~GG~~~~~~~~~~~yd~~~~~W  198 (323)
T TIGR03548       151 WFELPDFPGE-PRVQPVCVKLQ-NELYVFGGGSNIAYTDGYKYSPKKNQW  198 (323)
T ss_pred             eeECCCCCCC-CCCcceEEEEC-CEEEEEcCCCCccccceEEEecCCCee
Confidence            33221 1111 11111111122 34777776553    356788876543

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=89.64  E-value=27  Score=39.65  Aligned_cols=31  Identities=16%  Similarity=0.392  Sum_probs=23.3

Q ss_pred             CceEEEEEecCCCEEEEEECCCeEEEEECCC
Q 047260          716 NQFHSCVFHPSYSTLLVVGGISSLELWNMAE  746 (784)
Q Consensus       716 ~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~  746 (784)
                      ..|..++..+..+.+++.+.+|.|.+|++..
T Consensus       190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred             hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence            3478888888888899999999999999874

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=89.55  E-value=0.04  Score=61.10  Aligned_cols=139  Identities=17%  Similarity=0.272  Sum_probs=96.1

Q ss_pred             eEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEeCCCCceEEEecc
Q 047260          636 AQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVS--QNLVKVWSMASGECIQELSS  713 (784)
Q Consensus       636 ~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgs--dd~I~IwDl~t~~~i~~l~~  713 (784)
                      ....|.+.+..+++++.+..|..||-... .+..+. ..+....++|+.++..++...  .+.+.+||+.+...- .+..
T Consensus        38 i~~~w~~e~~nlavaca~tiv~~YD~agq-~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq-qLE~  114 (615)
T KOG2247|consen   38 IIHRWRPEGHNLAVACANTIVIYYDKAGQ-VILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ-QLES  114 (615)
T ss_pred             ceeeEecCCCceehhhhhhHHHhhhhhcc-eecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH-HHhc
Confidence            34567777788999999999999986532 222222 344566788998888766655  459999999764211 1111


Q ss_pred             -CCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceEEecc-cCCceEEEEEeCCCCEEEEEECCC
Q 047260          714 -NGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIAA-HENIISALAQSPVTGMVASASHDS  778 (784)
Q Consensus       714 -~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~~~-h~~~V~slafspdg~~LaSgs~DG  778 (784)
                       ....-.-+.|++....++.+...|.+.|++..+.+.....+ |..++++++|.+.+ +.+.++.|.
T Consensus       115 gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd-~vil~dcd~  180 (615)
T KOG2247|consen  115 GGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED-YVILCDCDN  180 (615)
T ss_pred             cCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc-eeeecCcHH
Confidence             11111226789988889999888999999998887775555 99999999999876 444454444

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=89.54  E-value=2.7  Score=43.23  Aligned_cols=71  Identities=14%  Similarity=0.143  Sum_probs=53.5

Q ss_pred             EEEecCCCEEEEEECCCcEEEEECCCCeEEEEE-------e-------CCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCC
Q 047260          638 VRFQPRIGQLLAAASDKVVSIFDIETDRQTHSL-------Q-------GHAELVNYICWDTNGDYLASVSQNLVKVWSMA  703 (784)
Q Consensus       638 v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l-------~-------~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~  703 (784)
                      +.+...+.++++.+.+|.+++||+.+++.+..-       .       .....|..+.++.+|.-|++-+++..+.||..
T Consensus        16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~   95 (219)
T PF07569_consen   16 SFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPD   95 (219)
T ss_pred             EEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccc
Confidence            335567788999999999999999888765432       1       24567888888899998988888888899876


Q ss_pred             CCceE
Q 047260          704 SGECI  708 (784)
Q Consensus       704 t~~~i  708 (784)
                      -+.-+
T Consensus        96 L~~W~  100 (219)
T PF07569_consen   96 LGCWI  100 (219)
T ss_pred             cceeE
Confidence            55433

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PLN02193 nitrile-specifier protein

Probab=89.45  E-value=46  Score=38.39  Aligned_cols=187  Identities=9%  Similarity=0.011  Sum_probs=87.8

Q ss_pred             CCCEEEEEeCC-------CeEEEEcCCCCcceeeeccC-CCC--C-eEEEEEcCCCCcEEEEEeCC-----CeEEEEeCC
Q 047260          560 NSSQLATASVD-------KSVRLWDAANPNFCSQAYTG-HSS--P-IMSLDFHPKKTDLFCFCDND-----NEIQYWSIN  623 (784)
Q Consensus       560 dg~~Latgs~D-------g~I~IWdl~~~~~~~~~~~~-h~~--~-V~sl~~sp~~~~ll~sgs~d-----g~I~iwDl~  623 (784)
                      ++.+++.|+.+       ..+.+||+++.........+ ...  . -.+++..  +..+++.|+.+     ..+.+||+.
T Consensus       175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~--~~~lYvfGG~~~~~~~ndv~~yD~~  252 (470)
T PLN02193        175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSI--GSTLYVFGGRDASRQYNGFYSFDTT  252 (470)
T ss_pred             CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEE--CCEEEEECCCCCCCCCccEEEEECC
Confidence            34556666643       24778888775533221111 111  0 1112221  34467777654     357888887


Q ss_pred             CCeeEEeecC-----Cee-EEEEecCCCEEEEEECC-----CcEEEEECCCCeEEEEEeC------CCCCEEEEEEcCCC
Q 047260          624 PFLCTHITKG-----GTA-QVRFQPRIGQLLAAASD-----KVVSIFDIETDRQTHSLQG------HAELVNYICWDTNG  686 (784)
Q Consensus       624 ~~~~~~~~~~-----~v~-~v~fsp~~~~Ll~~s~D-----g~I~IwDl~t~~~i~~l~~------h~~~V~sl~~spdg  686 (784)
                      +.+-......     +.. ..+..-++..++.|+.+     ..+..||+.+.+-.. +..      .......+.  -++
T Consensus       253 t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~-~~~~~~~~~~R~~~~~~~--~~g  329 (470)
T PLN02193        253 TNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFH-CSTPGDSFSIRGGAGLEV--VQG  329 (470)
T ss_pred             CCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEe-CCCCCCCCCCCCCcEEEE--ECC
Confidence            6544332211     111 11122234445555543     346788887654221 110      111111122  245


Q ss_pred             CEEEEEe-C----CeEEEEeCCCCceEEEecc---CCCceEEEEEecCCCEEEEEECC--------------CeEEEEEC
Q 047260          687 DYLASVS-Q----NLVKVWSMASGECIQELSS---NGNQFHSCVFHPSYSTLLVVGGI--------------SSLELWNM  744 (784)
Q Consensus       687 ~~Lasgs-d----d~I~IwDl~t~~~i~~l~~---~~~~I~sl~fspdg~~L~s~s~d--------------g~I~Iwdl  744 (784)
                      ++++.++ +    +.|.+||+.+.+....-..   ........+..-+++.++.++..              ..+.+||+
T Consensus       330 kiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~  409 (470)
T PLN02193        330 KVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDT  409 (470)
T ss_pred             cEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEc
Confidence            6655554 2    3689999988654322111   11111122222345566666642              24788998


Q ss_pred             CCCceEE
Q 047260          745 AENKSMT  751 (784)
Q Consensus       745 ~~~~~~~  751 (784)
                      .+.+-..
T Consensus       410 ~t~~W~~  416 (470)
T PLN02193        410 ETLQWER  416 (470)
T ss_pred             CcCEEEE
Confidence            8776553

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=89.42  E-value=42  Score=37.85  Aligned_cols=143  Identities=9%  Similarity=0.044  Sum_probs=78.1

Q ss_pred             eEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC--eeE-EeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCe-----E
Q 047260          595 IMSLDFHPKKTDLFCFCDNDNEIQYWSINPF--LCT-HITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDR-----Q  666 (784)
Q Consensus       595 V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~--~~~-~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~-----~  666 (784)
                      ...+...+++. +++.+.....++-||--..  ..+ ......+..+.+.+++..++++ .+|.|..- ...++     .
T Consensus       241 f~~v~~~~dG~-~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~S-~d~G~~~~~~~  317 (398)
T PLN00033        241 FSTVNRSPDGD-YVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYVS-KGTGLTEEDFD  317 (398)
T ss_pred             eeeEEEcCCCC-EEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEEe-cCCCCcccccc
Confidence            34445566654 4444443333333443221  212 1223556788888887766554 55655432 33332     1


Q ss_pred             EEEEeC--CCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEEEe---ccCCCceEEEEEecCCCEEEEEECCCeEEE
Q 047260          667 THSLQG--HAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQEL---SSNGNQFHSCVFHPSYSTLLVVGGISSLEL  741 (784)
Q Consensus       667 i~~l~~--h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~~l---~~~~~~I~sl~fspdg~~L~s~s~dg~I~I  741 (784)
                      ...+..  ....+..+.|.+++..+++|..+.+.... ..|+.-...   ..-...++.+.|.++++ .++.+.+|.|..
T Consensus       318 f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~-g~~~G~~G~il~  395 (398)
T PLN00033        318 FEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKK-GFVLGNDGVLLR  395 (398)
T ss_pred             eeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCc-eEEEeCCcEEEE
Confidence            222221  12358899999999999988888555543 334332222   22245678889877654 667777787765


Q ss_pred             E
Q 047260          742 W  742 (784)
Q Consensus       742 w  742 (784)
                      |
T Consensus       396 ~  396 (398)
T PLN00033        396 Y  396 (398)
T ss_pred             e
Confidence            5

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=89.26  E-value=41  Score=37.50  Aligned_cols=63  Identities=6%  Similarity=0.069  Sum_probs=30.4

Q ss_pred             CCCEEEEEe-CCCeEEEEECCCC----ceeeecCC-CCCCeEEEEEccCCCEEEEEeCCC-----------eEEEEcCCC
Q 047260          518 DGKLLASSG-HDRKVVLWNMDTL----QTESTPED-HKSVVTDVRFRPNSSQLATASVDK-----------SVRLWDAAN  580 (784)
Q Consensus       518 dg~~Lasgs-~Dg~I~IWd~~t~----~~~~~l~~-h~~~It~i~fspdg~~Latgs~Dg-----------~I~IWdl~~  580 (784)
                      ++++.+.++ .+..+.++|++..    ..+..+.. .......+.  -++.+.+.|+.+.           .+..||..+
T Consensus        38 ~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~--~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~  115 (376)
T PRK14131         38 NNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAF--IDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKT  115 (376)
T ss_pred             CCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEEE--ECCEEEEEcCCCCCCCCCceeEcccEEEEeCCC
Confidence            455444444 3455778887632    12222211 111112222  2566777776532           467788876


Q ss_pred             Cc
Q 047260          581 PN  582 (784)
Q Consensus       581 ~~  582 (784)
                      ..
T Consensus       116 n~  117 (376)
T PRK14131        116 NS  117 (376)
T ss_pred             CE
Confidence            55

>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2

Probab=89.06  E-value=37  Score=36.72  Aligned_cols=203  Identities=15%  Similarity=0.153  Sum_probs=96.6

Q ss_pred             CCCceEEEEEcCCCCEEEE-EeCCCeEEEEECCCCce---------------eeecCCCCCCeEEEEEccCC-CEEEEEe
Q 047260          506 RNSKVTCCHFSSDGKLLAS-SGHDRKVVLWNMDTLQT---------------ESTPEDHKSVVTDVRFRPNS-SQLATAS  568 (784)
Q Consensus       506 H~~~V~~l~fspdg~~Las-gs~Dg~I~IWd~~t~~~---------------~~~l~~h~~~It~i~fspdg-~~Latgs  568 (784)
                      +...|+++...+.-+.|++ ++....++++++.....               ....-.|......+...... ..++++.
T Consensus        41 ~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A  120 (302)
T smart00036       41 GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVA  120 (302)
T ss_pred             CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEEE
Confidence            5667999999987776554 44445599999853321               01112444444444444222 2344555


Q ss_pred             CCCeEEEEcCCCC--cc-eeee----ccCCCCCeEEEEEcCCC-CcEEEEEeCCCeEEEEeCCC--CeeEE------eec
Q 047260          569 VDKSVRLWDAANP--NF-CSQA----YTGHSSPIMSLDFHPKK-TDLFCFCDNDNEIQYWSINP--FLCTH------ITK  632 (784)
Q Consensus       569 ~Dg~I~IWdl~~~--~~-~~~~----~~~h~~~V~sl~~sp~~-~~ll~sgs~dg~I~iwDl~~--~~~~~------~~~  632 (784)
                      ...+|.++.....  +. ..+.    ...-..++..+..+++. ...++.|...+...++++..  .....      ...
T Consensus       121 ~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~  200 (302)
T smart00036      121 LQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEE  200 (302)
T ss_pred             cCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEEEEcCCCCeEEEEeecccccccccccccccc
Confidence            5667777654432  11 1111    00112233333333331 23455555432333333321  10000      000


Q ss_pred             -C-CeeEEEEecCCCEEEEEECCCcEEEEECCCCeEE--EEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceE
Q 047260          633 -G-GTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQT--HSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECI  708 (784)
Q Consensus       633 -~-~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i--~~l~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i  708 (784)
                       . ...++..-++ +.++.+..+ ...+.|....+..  ..+. -.....++++.  ..+|++-.++.|.|+++.+++.+
T Consensus       201 ~~~~p~~i~~l~~-~e~Llc~~~-~~v~Vn~~G~~~~r~~~l~-w~~~p~~~~~~--~pyll~~~~~~ievr~l~~~~l~  275 (302)
T smart00036      201 TSLKPISVVQVPR-DEFLLCYDE-FGVFVNLYGKRRSRNPILH-WEFMPESFAYH--SPYLLAFHDNGIEIRSIKTGELL  275 (302)
T ss_pred             cccCceEEEEECC-CeEEEEECc-EEEEEeCCCCccccceEEE-cCCcccEEEEE--CCEEEEEcCCcEEEEECCCCceE
Confidence             1 1222222223 344444433 3444444321111  1121 23344566665  46777777889999999999988


Q ss_pred             EEecc
Q 047260          709 QELSS  713 (784)
Q Consensus       709 ~~l~~  713 (784)
                      .++..
T Consensus       276 q~i~~  280 (302)
T smart00036      276 QELAD  280 (302)
T ss_pred             EEEec
Confidence            88864

Unpublished observations.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=88.93  E-value=6.8  Score=44.29  Aligned_cols=134  Identities=10%  Similarity=0.139  Sum_probs=87.9

Q ss_pred             ecCCCEEEEE-ECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCC--------CEEEEEeCCeEEEEeCCC-CceEEE
Q 047260          641 QPRIGQLLAA-ASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNG--------DYLASVSQNLVKVWSMAS-GECIQE  710 (784)
Q Consensus       641 sp~~~~Ll~~-s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg--------~~Lasgsdd~I~IwDl~t-~~~i~~  710 (784)
                      ..+...|+.- .....++-.|++.|+.+..+..|...  -|.|.|+.        ..|+..++..|.-.|.+- |..+..
T Consensus       476 ~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v  553 (776)
T COG5167         476 DNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKV  553 (776)
T ss_pred             cCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceee
Confidence            3344444443 34578888999999999999877665  46677753        356777777777777654 322222


Q ss_pred             ecc----CCCceEEEEEecCCCEEEEEECCCeEEEEECCCCce-EEecccCCceEEEEEeCCCCEEEEEECC
Q 047260          711 LSS----NGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKS-MTIAAHENIISALAQSPVTGMVASASHD  777 (784)
Q Consensus       711 l~~----~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~-~~~~~h~~~V~slafspdg~~LaSgs~D  777 (784)
                      ...    ......+..- ....+|++++..|.|++||.-.... ..+.+....|..|..+.+|++|++.|..
T Consensus       554 ~esKdY~tKn~Fss~~t-TesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~  624 (776)
T COG5167         554 VESKDYKTKNKFSSGMT-TESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN  624 (776)
T ss_pred             eeehhcccccccccccc-ccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc
Confidence            211    1122333333 3445899999999999999654433 3566777889999999999977766643

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.84  E-value=10  Score=43.02  Aligned_cols=100  Identities=15%  Similarity=0.140  Sum_probs=61.4

Q ss_pred             CCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEE
Q 047260          550 SVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTH  629 (784)
Q Consensus       550 ~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~  629 (784)
                      -.|..|..++.|..++..+.+|.+.++=.+.-. ....+......|.|-.+.-+.. ++.+.                  
T Consensus       104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG-~~s~~eDgk~~v~CRt~~i~~~-~ftss------------------  163 (741)
T KOG4460|consen  104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWG-KNSEFEDGKSTVNCRTTPVAER-FFTSS------------------  163 (741)
T ss_pred             EEEEEEEecCCCceEEEecCCeeEEEEchhhcC-ccceecCCCceEEEEeecccce-eeccC------------------
Confidence            357788889999999999999877665432211 1222333334455554443322 22211                  


Q ss_pred             eecCCeeEEEEecCC---CEEEEEECCCcEEEEECCCCeEEEEE
Q 047260          630 ITKGGTAQVRFQPRI---GQLLAAASDKVVSIFDIETDRQTHSL  670 (784)
Q Consensus       630 ~~~~~v~~v~fsp~~---~~Ll~~s~Dg~I~IwDl~t~~~i~~l  670 (784)
                       ..-.+..++|+|+.   .+|++-..|..|++||+.....+...
T Consensus       164 -~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~telylq  206 (741)
T KOG4460|consen  164 -TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELYLQ  206 (741)
T ss_pred             -CceeeeeccccCCccCCceEEEEecCcEEEEEecCCcchhhcc
Confidence             11234456788875   67888899999999999877655443

>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription]

Probab=88.61  E-value=0.058  Score=66.07  Aligned_cols=13  Identities=0%  Similarity=0.005  Sum_probs=6.5

Q ss_pred             CCCCcccccchhh
Q 047260          154 DLDTSPALMDANK  166 (784)
Q Consensus       154 ~~~~~~~~~~~~~  166 (784)
                      -+.+-.++|+|-+
T Consensus      2016 q~~~~~~~l~p~~ 2028 (2220)
T KOG3598|consen 2016 QSAGATQQLQPMQ 2028 (2220)
T ss_pred             ccCCCceecCchH
Confidence            3344446666544

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=88.60  E-value=0.18  Score=56.17  Aligned_cols=145  Identities=15%  Similarity=0.227  Sum_probs=102.5

Q ss_pred             CCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEE
Q 047260          550 SVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTH  629 (784)
Q Consensus       550 ~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~  629 (784)
                      .......|-+.+.-++.++.+..|..||-..... .  -...+.....++|..+++.+++.+...+.+.+||+++...-.
T Consensus        35 v~pi~~~w~~e~~nlavaca~tiv~~YD~agq~~-l--e~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqq  111 (615)
T KOG2247|consen   35 VGPIIHRWRPEGHNLAVACANTIVIYYDKAGQVI-L--ELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQ  111 (615)
T ss_pred             cccceeeEecCCCceehhhhhhHHHhhhhhccee-c--ccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHH
Confidence            3344567778777788888898999998654321 1  112345677889998888888888899999999998532221


Q ss_pred             eecCC---eeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeE
Q 047260          630 ITKGG---TAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQNLV  697 (784)
Q Consensus       630 ~~~~~---v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd~I  697 (784)
                      .-.+.   -.-+.|++....++.+...|.+.|+...+.+.+...-.|...+++++|.+.+..+....+..+
T Consensus       112 LE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dcd~~L  182 (615)
T KOG2247|consen  112 LESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDCDNTL  182 (615)
T ss_pred             HhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecCcHHHH
Confidence            11111   112568888888888888999999998887766665558899999999988776655544333

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=88.53  E-value=54  Score=38.00  Aligned_cols=258  Identities=11%  Similarity=0.047  Sum_probs=129.4

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecC-CCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceee
Q 047260          508 SKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPE-DHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQ  586 (784)
Q Consensus       508 ~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~-~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~  586 (784)
                      .+|..+..+-.|+ |.+|+.+| |++.+.+..+...-.. -..+.|..+.-..+| .+-.|+..|..+. ..........
T Consensus       206 k~I~al~~d~qg~-LWVGTdqG-v~~~e~~G~~~sn~~~~lp~~~I~ll~qD~qG-~lWiGTenGl~r~-~l~rq~Lq~~  281 (671)
T COG3292         206 KAINALIADVQGR-LWVGTDQG-VYLQEAEGWRASNWGPMLPSGNILLLVQDAQG-ELWIGTENGLWRT-RLPRQGLQIP  281 (671)
T ss_pred             hhHHHHHHHhcCc-EEEEeccc-eEEEchhhccccccCCCCcchheeeeecccCC-CEEEeecccceeE-ecCCCCcccc
Confidence            3455555554554 66677777 8888776533222211 123344444444344 4666666654332 3332221111


Q ss_pred             eccCC--CCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC--eeEEeecCCeeE-EEEec--CCCEEEEEECCCcEEEE
Q 047260          587 AYTGH--SSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPF--LCTHITKGGTAQ-VRFQP--RIGQLLAAASDKVVSIF  659 (784)
Q Consensus       587 ~~~~h--~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~--~~~~~~~~~v~~-v~fsp--~~~~Ll~~s~Dg~I~Iw  659 (784)
                      ...-|  -+.|.++....++.  +-+++.++.+++-+-.-.  ..+...++.+.. ++..|  .+..+-...+-|.+.+-
T Consensus       282 ~~~~~l~~S~vnsL~~D~dGs--LWv~t~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~va  359 (671)
T COG3292         282 LSKMHLGVSTVNSLWLDTDGS--LWVGTYGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVA  359 (671)
T ss_pred             ccccCCccccccceeeccCCC--EeeeccCceEEEecchhhheeeeecCCCchhhhhccCchhcccceeeccccceEEEe
Confidence            11111  23455665555554  445666666665443211  111112121111 11111  11122222223344455


Q ss_pred             ECCCCeEEEEEeC-CCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCC-CceEEEecc-CCCceEEEEEecCCCEEEEEECC
Q 047260          660 DIETDRQTHSLQG-HAELVNYICWDTNGDYLASVSQNLVKVWSMAS-GECIQELSS-NGNQFHSCVFHPSYSTLLVVGGI  736 (784)
Q Consensus       660 Dl~t~~~i~~l~~-h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t-~~~i~~l~~-~~~~I~sl~fspdg~~L~s~s~d  736 (784)
                      +-.++..++.... ....|+.+++..+|..-+....+-+..|+..+ +..+.+..+ ..++|..+.-.|+++ |..++.+
T Consensus       360 n~stG~~v~sv~q~Rg~nit~~~~d~~g~lWlgs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~  438 (671)
T COG3292         360 NGSTGELVRSVHQLRGMNITTTLEDSRGRLWLGSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSG  438 (671)
T ss_pred             cCCCCcEEEEeeeccccccchhhhccCCcEEEEecccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccC
Confidence            5555655554332 34567778888866655544455777888777 444444433 346778888888888 8888888


Q ss_pred             CeEEEEECCCCceE---Eecc---cCCceEEEEEeCCCCEEEE
Q 047260          737 SSLELWNMAENKSM---TIAA---HENIISALAQSPVTGMVAS  773 (784)
Q Consensus       737 g~I~Iwdl~~~~~~---~~~~---h~~~V~slafspdg~~LaS  773 (784)
                      |.++. +.+.++..   .+..   ..+.|..+.+.+++++-+.
T Consensus       439 Glvk~-~pe~~~v~n~ln~~~~~l~~s~~~~lg~~~~g~Lw~a  480 (671)
T COG3292         439 GLVKR-DPESGRVLNLLNPGSHGLDGSRVEQLGLGPDGRLWLA  480 (671)
T ss_pred             CeEec-CccccchhcccccccCcCCcchhhhhccCCCCceEEE
Confidence            86554 33443333   1112   2345777888888875443

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=87.99  E-value=3  Score=42.88  Aligned_cols=62  Identities=15%  Similarity=0.209  Sum_probs=47.6

Q ss_pred             EEecCCCEEEEEECCCeEEEEECCCCceEE--------ec-------ccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          722 VFHPSYSTLLVVGGISSLELWNMAENKSMT--------IA-------AHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       722 ~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~--------~~-------~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      .+...+.++++.+.+|.+++||+.+.+.+.        +.       .....|..+.++.+|.-|++-+ +|..+.|+
T Consensus        17 ~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~   93 (219)
T PF07569_consen   17 FLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYS   93 (219)
T ss_pred             EEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEec
Confidence            355678899999999999999999987651        11       3556788899998887777665 57788875

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=87.91  E-value=56  Score=37.44  Aligned_cols=60  Identities=15%  Similarity=0.117  Sum_probs=41.4

Q ss_pred             EeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCce--eeecC-----CCCCCeEEEEEccCC
Q 047260          502 CIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQT--ESTPE-----DHKSVVTDVRFRPNS  561 (784)
Q Consensus       502 ~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~--~~~l~-----~h~~~It~i~fspdg  561 (784)
                      .+...-...+.|+|.|||++|++--..|.|++++..++..  +..+.     ........|+|+|+-
T Consensus        24 ~va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        24 VLLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF   90 (454)
T ss_pred             EEECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence            3444556789999999998887765579999998665432  21111     135678999999874

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=87.84  E-value=5.6  Score=47.53  Aligned_cols=113  Identities=15%  Similarity=0.150  Sum_probs=76.4

Q ss_pred             ceEEEEEcC--CCCEEEEEeCCCeEEEEECCC-------C----c---------eeeecCCCCCCeEEEEEc--cCCCEE
Q 047260          509 KVTCCHFSS--DGKLLASSGHDRKVVLWNMDT-------L----Q---------TESTPEDHKSVVTDVRFR--PNSSQL  564 (784)
Q Consensus       509 ~V~~l~fsp--dg~~Lasgs~Dg~I~IWd~~t-------~----~---------~~~~l~~h~~~It~i~fs--pdg~~L  564 (784)
                      .|+.|....  +...|+.|.+||.|.+|.+++       .    .         +...+ .....++.++++  ...++|
T Consensus       102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlI  180 (717)
T PF08728_consen  102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLI  180 (717)
T ss_pred             eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcceEE
Confidence            366665544  556899999999999997632       1    0         11111 234578999998  778888


Q ss_pred             EEEeCCCeEEEEcCCC--CcceeeeccCCCCCeEEEEEcCCC--C---cEEEEEeCCCeEEEEeC
Q 047260          565 ATASVDKSVRLWDAAN--PNFCSQAYTGHSSPIMSLDFHPKK--T---DLFCFCDNDNEIQYWSI  622 (784)
Q Consensus       565 atgs~Dg~I~IWdl~~--~~~~~~~~~~h~~~V~sl~~sp~~--~---~ll~sgs~dg~I~iwDl  622 (784)
                      |+++....|.||-+..  .+.....-..|...|-+|+|.++.  .   ..+++++-.|.+.+|++
T Consensus       181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            8888888888876543  221111122356679999998764  2   27778888999998887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]

Probab=87.28  E-value=93  Score=39.27  Aligned_cols=136  Identities=13%  Similarity=0.136  Sum_probs=76.6

Q ss_pred             CEEEEEEC---------CCcEEEEECCC-----CeE-----EEEE--eCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeC-
Q 047260          645 GQLLAAAS---------DKVVSIFDIET-----DRQ-----THSL--QGHAELVNYICWDTNGDYLASVSQNLVKVWSM-  702 (784)
Q Consensus       645 ~~Ll~~s~---------Dg~I~IwDl~t-----~~~-----i~~l--~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl-  702 (784)
                      .+|++|..         -|.+.|||+-.     +++     ++.+  +.-++.|..+|= -+| +|+++..-.|.||++ 
T Consensus      1047 ~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavce-V~G-~l~~~~GqKI~v~~l~ 1124 (1366)
T KOG1896|consen 1047 PYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCE-VRG-HLLSSQGQKIIVRKLD 1124 (1366)
T ss_pred             ceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEE-ecc-EEEEccCcEEEEEEec
Confidence            46776653         38899999732     222     2222  235567776653 234 455555558999999 


Q ss_pred             CCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCc-eEEecc---cCCceEEEEEeCCCC--EEEEEEC
Q 047260          703 ASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENK-SMTIAA---HENIISALAQSPVTG--MVASASH  776 (784)
Q Consensus       703 ~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~-~~~~~~---h~~~V~slafspdg~--~LaSgs~  776 (784)
                      +....+..- --.-++......--.++|+.+.--..|.+.-..... .+.+..   ..-.+.++.|--||.  .++++..
T Consensus      1125 r~~~ligVa-FiD~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa 1203 (1366)
T KOG1896|consen 1125 RDSELIGVA-FIDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDA 1203 (1366)
T ss_pred             cCCcceeeE-EeccceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcC
Confidence            444332211 111222333333334567777666667766654432 223322   233577888887776  6778888


Q ss_pred             CCcEEEe
Q 047260          777 DSSVKLW  783 (784)
Q Consensus       777 DG~V~IW  783 (784)
                      |+.|++|
T Consensus      1204 ~rNi~vy 1210 (1366)
T KOG1896|consen 1204 DRNIHVY 1210 (1366)
T ss_pred             CCcEEEE
Confidence            9999886

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=87.19  E-value=53  Score=36.40  Aligned_cols=186  Identities=5%  Similarity=-0.064  Sum_probs=100.0

Q ss_pred             CCCEEEEEeCCCeEEEEcCCCCcceeeeccCC-CCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCCeeEE
Q 047260          560 NSSQLATASVDKSVRLWDAANPNFCSQAYTGH-SSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQV  638 (784)
Q Consensus       560 dg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h-~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v~~v  638 (784)
                      ++ .++++..||.|.-.|.+++...-...... ...+.+-.+..+|.  ++.++.++.++.+|.+++..+........ .
T Consensus        68 dg-~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~--i~~g~~~g~~y~ld~~~G~~~W~~~~~~~-~  143 (370)
T COG1520          68 DG-TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK--IYVGSWDGKLYALDASTGTLVWSRNVGGS-P  143 (370)
T ss_pred             CC-eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe--EEEecccceEEEEECCCCcEEEEEecCCC-e
Confidence            44 45555788888888888766321111110 11222222223554  66677788999999987777666554331 1


Q ss_pred             EE----ecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCC---CEEEEEEcCCCCEEEEEe--CCeEEEEeCCCCceEE
Q 047260          639 RF----QPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAE---LVNYICWDTNGDYLASVS--QNLVKVWSMASGECIQ  709 (784)
Q Consensus       639 ~f----sp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~---~V~sl~~spdg~~Lasgs--dd~I~IwDl~t~~~i~  709 (784)
                      .+    -.....++..+.++.+...|..+++....+.....   .+..-....++..++...  ++.+.-.|..+|..+.
T Consensus       144 ~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~w  223 (370)
T COG1520         144 YYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTLKW  223 (370)
T ss_pred             EEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCcEee
Confidence            11    11234455555789999999998887766543221   111111122333333333  2367777888887766


Q ss_pred             EeccC----CCce------EEEEEecCCCEEEEEECCCeEEEEECCCCceE
Q 047260          710 ELSSN----GNQF------HSCVFHPSYSTLLVVGGISSLELWNMAENKSM  750 (784)
Q Consensus       710 ~l~~~----~~~I------~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~  750 (784)
                      ..+..    ...+      ..-...-++ .++.++.++.+...|..+++.+
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~v~v~~-~~~~~~~~g~~~~l~~~~G~~~  273 (370)
T COG1520         224 SQKVSQTIGRTAISTTPAVDGGPVYVDG-GVYAGSYGGKLLCLDADTGELI  273 (370)
T ss_pred             eeeeecccCcccccccccccCceEEECC-cEEEEecCCeEEEEEcCCCceE
Confidence            63211    1111      000111111 2466667777888888888877

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=87.03  E-value=7.2  Score=43.99  Aligned_cols=90  Identities=9%  Similarity=0.021  Sum_probs=64.6

Q ss_pred             CCcceeEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCe-EEEEEccC-C---------
Q 047260          493 KGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVV-TDVRFRPN-S---------  561 (784)
Q Consensus       493 ~~~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I-t~i~fspd-g---------  561 (784)
                      ...+......|......+.+|+.+|++++.|+...-|.|.++|+.++..++..++..+.= .-+..... .         
T Consensus       293 ~~~~l~~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~  372 (415)
T PF14655_consen  293 PAAPLPMRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSP  372 (415)
T ss_pred             CCcccceEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeeccccccccccccc
Confidence            345566677788888899999999999999998888999999999998888887655431 11111111 1         


Q ss_pred             -------C-EEEEEeCCCeEEEEcCCCCc
Q 047260          562 -------S-QLATASVDKSVRLWDAANPN  582 (784)
Q Consensus       562 -------~-~Latgs~Dg~I~IWdl~~~~  582 (784)
                             . +++-+-.-|.|.||++..+.
T Consensus       373 ~~~~~~~l~LvIyaprRg~lEvW~~~~g~  401 (415)
T PF14655_consen  373 KSSSRFALFLVIYAPRRGILEVWSMRQGP  401 (415)
T ss_pred             CCCCcceEEEEEEeccCCeEEEEecCCCC
Confidence                   1 23445667889999988765

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=86.97  E-value=25  Score=33.15  Aligned_cols=110  Identities=15%  Similarity=0.069  Sum_probs=65.5

Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEECCCCc--------eeeecCCCCCCeEEEEEcc-----CCCEEEEEeCCCeEEEEc
Q 047260          511 TCCHFSSDGKLLASSGHDRKVVLWNMDTLQ--------TESTPEDHKSVVTDVRFRP-----NSSQLATASVDKSVRLWD  577 (784)
Q Consensus       511 ~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~--------~~~~l~~h~~~It~i~fsp-----dg~~Latgs~Dg~I~IWd  577 (784)
                      ..-.|......|++++.-|+|.|++.....        .+..+ .-...|++|+--+     +...|+.|+. ..+..||
T Consensus         2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt~-t~llaYD   79 (136)
T PF14781_consen    2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYD   79 (136)
T ss_pred             eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEE
Confidence            344566666688889999999999876332        22333 3456677776444     3456666654 6799999


Q ss_pred             CCCCcceeeeccCCCCCeEEEEEcC---CCCcEEEEEeCCCeEEEEeCCCC
Q 047260          578 AANPNFCSQAYTGHSSPIMSLDFHP---KKTDLFCFCDNDNEIQYWSINPF  625 (784)
Q Consensus       578 l~~~~~~~~~~~~h~~~V~sl~~sp---~~~~ll~sgs~dg~I~iwDl~~~  625 (784)
                      +.....  ..++.-.+.|.++.+-.   ....++++|+ +..|.-||.+..
T Consensus        80 V~~N~d--~Fyke~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G~  127 (136)
T PF14781_consen   80 VENNSD--LFYKEVPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEGN  127 (136)
T ss_pred             cccCch--hhhhhCccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCCc
Confidence            987552  23334446677776632   1222444333 555665555543

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=86.91  E-value=36  Score=37.21  Aligned_cols=96  Identities=17%  Similarity=0.279  Sum_probs=59.6

Q ss_pred             EEEEEEcCCCCEEEEEe-C------CeEEEEeCCCCceEEEec---------------cCCCceEEEEEecCCCEEEEEE
Q 047260          677 VNYICWDTNGDYLASVS-Q------NLVKVWSMASGECIQELS---------------SNGNQFHSCVFHPSYSTLLVVG  734 (784)
Q Consensus       677 V~sl~~spdg~~Lasgs-d------d~I~IwDl~t~~~i~~l~---------------~~~~~I~sl~fspdg~~L~s~s  734 (784)
                      .-+|++.++|.++++.. +      ..|+.++.. |+.+..+.               .....+-.++++|++..|+++.
T Consensus        87 ~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~  165 (326)
T PF13449_consen   87 PEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM  165 (326)
T ss_pred             hhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence            34677777787777655 3      367777765 65554442               1234578999999999777765


Q ss_pred             CC-----C--e-------EEE--EECCC-Cce---E--Eecc-----cCCceEEEEEeCCCCEEEE
Q 047260          735 GI-----S--S-------LEL--WNMAE-NKS---M--TIAA-----HENIISALAQSPVTGMVAS  773 (784)
Q Consensus       735 ~d-----g--~-------I~I--wdl~~-~~~---~--~~~~-----h~~~V~slafspdg~~LaS  773 (784)
                      ..     +  .       ++|  ||..+ +..   .  .+..     ....|+.+.+-+++++|+-
T Consensus       166 E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL  231 (326)
T PF13449_consen  166 ESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL  231 (326)
T ss_pred             CccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence            42     2  1       445  45544 211   1  1221     4567899999999987664

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=86.84  E-value=31  Score=35.21  Aligned_cols=130  Identities=10%  Similarity=0.087  Sum_probs=65.4

Q ss_pred             CEEEEEeCCCeEEEEcCCCCcc-eeeeccCCCCCeEEEEEcCCCCcEEEEEeCCC-----eEEEE-eCCCCeeEEeecCC
Q 047260          562 SQLATASVDKSVRLWDAANPNF-CSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDN-----EIQYW-SINPFLCTHITKGG  634 (784)
Q Consensus       562 ~~Latgs~Dg~I~IWdl~~~~~-~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg-----~I~iw-Dl~~~~~~~~~~~~  634 (784)
                      +.|+.+...+.|.+|++..... ....+. .-+.|..+.++..|++++..-....     .+|+| +++..   .....+
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~---~~~~~~  104 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQ---KEENSP  104 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhh---cccCCc
Confidence            4555556677899999984332 333333 3478999999999885554433221     44544 22211   000111


Q ss_pred             eeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCC
Q 047260          635 TAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASG  705 (784)
Q Consensus       635 v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~  705 (784)
                      +. ++..  | +-+.++.....     ...-.+..+. -...+.+++..|-.--|++|+++.+.||.+...
T Consensus       105 v~-vRia--G-~~v~~~~~~~~-----~~qleiiElP-l~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~  165 (215)
T PF14761_consen  105 VR-VRIA--G-HRVTPSFNESS-----KDQLEIIELP-LSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQ  165 (215)
T ss_pred             EE-EEEc--c-cccccCCCCcc-----ccceEEEEec-CCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEE
Confidence            11 1100  0 01111111110     0011122222 355677888777555566778889999987643

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=86.67  E-value=36  Score=37.29  Aligned_cols=183  Identities=12%  Similarity=0.020  Sum_probs=0.0

Q ss_pred             EEEEcCCCCEEEEEeCC-----------CeEEEEECCCCceeeecCCCCCCeEEEEEc--cCCCEEEEEeCC--------
Q 047260          512 CCHFSSDGKLLASSGHD-----------RKVVLWNMDTLQTESTPEDHKSVVTDVRFR--PNSSQLATASVD--------  570 (784)
Q Consensus       512 ~l~fspdg~~Lasgs~D-----------g~I~IWd~~t~~~~~~l~~h~~~It~i~fs--pdg~~Latgs~D--------  570 (784)
                      .....-++++.+.|+.+           ..+..||..+.+-..............+..  -++++.+.|+.+        
T Consensus        57 ~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~  136 (346)
T TIGR03547        57 AVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYF  136 (346)
T ss_pred             ceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHH


Q ss_pred             -------------------------------CeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCC-----
Q 047260          571 -------------------------------KSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDND-----  614 (784)
Q Consensus       571 -------------------------------g~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~d-----  614 (784)
                                                     ..|.+||..+.......-.............-++. +++.|+.+     
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~-iyv~GG~~~~~~~  215 (346)
T TIGR03547       137 ADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNK-LLLINGEIKPGLR  215 (346)
T ss_pred             hhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECccCCCCcCCCceEEEECCE-EEEEeeeeCCCcc


Q ss_pred             -CeEEEEeCCCCeeEEeecCCe------------eEEEEecCCCEEEEEECC----------------------CcEEEE
Q 047260          615 -NEIQYWSINPFLCTHITKGGT------------AQVRFQPRIGQLLAAASD----------------------KVVSIF  659 (784)
Q Consensus       615 -g~I~iwDl~~~~~~~~~~~~v------------~~v~fsp~~~~Ll~~s~D----------------------g~I~Iw  659 (784)
                       ..+.+++++............            ...+...++..+++|+.+                      ..+.+|
T Consensus       216 ~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~y  295 (346)
T TIGR03547       216 TAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVY  295 (346)
T ss_pred             chheEEEEecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEE


Q ss_pred             ECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC
Q 047260          660 DIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN  695 (784)
Q Consensus       660 Dl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd  695 (784)
                      |.++.+-...-.-........+..-++++++.|+.+
T Consensus       296 d~~~~~W~~~~~lp~~~~~~~~~~~~~~iyv~GG~~  331 (346)
T TIGR03547       296 ALDNGKWSKVGKLPQGLAYGVSVSWNNGVLLIGGEN  331 (346)
T ss_pred             EecCCcccccCCCCCCceeeEEEEcCCEEEEEeccC

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=86.44  E-value=93  Score=38.40  Aligned_cols=155  Identities=14%  Similarity=0.189  Sum_probs=91.3

Q ss_pred             cCCCceEEEEEc---C----CCCEEEEEeCCCeEEEEECC------C---------CceeeecCC---CCCCeEEEEEcc
Q 047260          505 SRNSKVTCCHFS---S----DGKLLASSGHDRKVVLWNMD------T---------LQTESTPED---HKSVVTDVRFRP  559 (784)
Q Consensus       505 ~H~~~V~~l~fs---p----dg~~Lasgs~Dg~I~IWd~~------t---------~~~~~~l~~---h~~~It~i~fsp  559 (784)
                      .-..+|..|+|.   .    ..++|++ -....+.|+...      .         ..++..+..   ...+..+++|+|
T Consensus        77 ~~~~PI~qI~fa~~~~~~~~~~~~l~V-rt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP  155 (765)
T PF10214_consen   77 DDGSPIKQIKFATLSESFDEKSRWLAV-RTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP  155 (765)
T ss_pred             CCCCCeeEEEecccccccCCcCcEEEE-EcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence            467789999998   2    2235554 445567777721      1         122333321   234678899999


Q ss_pred             -CCCEEEEEeCCCeEEEEcCCCCc----ceeeeccCCC----------CCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCC
Q 047260          560 -NSSQLATASVDKSVRLWDAANPN----FCSQAYTGHS----------SPIMSLDFHPKKTDLFCFCDNDNEIQYWSINP  624 (784)
Q Consensus       560 -dg~~Latgs~Dg~I~IWdl~~~~----~~~~~~~~h~----------~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~  624 (784)
                       +...||+....|.-.||++....    ........+.          +.-..|.|.++...+|+ ++ ...+.++|+++
T Consensus       156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv-~~-r~~l~~~d~~~  233 (765)
T PF10214_consen  156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLV-CN-RSKLMLIDFES  233 (765)
T ss_pred             CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEE-Ec-CCceEEEECCC
Confidence             66789999999999999992111    0111111111          22347788777664554 33 56788888886


Q ss_pred             CeeEE-ee----cCCeeEEEEecCCC-EEEEEECCCcEEEEECCC
Q 047260          625 FLCTH-IT----KGGTAQVRFQPRIG-QLLAAASDKVVSIFDIET  663 (784)
Q Consensus       625 ~~~~~-~~----~~~v~~v~fsp~~~-~Ll~~s~Dg~I~IwDl~t  663 (784)
                      ..... ..    ...+..+.-++... ++++- ....|..+|+..
T Consensus       234 ~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL-Ts~eiiw~~~~~  277 (765)
T PF10214_consen  234 NWQTEYLVTAKTWSWILDVKRSPDNPSHVFIL-TSKEIIWLDVKS  277 (765)
T ss_pred             CCccchhccCCChhheeeEEecCCccceEEEE-ecCeEEEEEccC
Confidence            54422 11    14566777666632 33333 347788888876

These proteins are found in fungi.

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=86.07  E-value=17  Score=36.73  Aligned_cols=165  Identities=7%  Similarity=-0.002  Sum_probs=87.0

Q ss_pred             cEEEEEeC--CCeEEEEeCCCCeeEEeecCC---eeEEEEecCCCEEEEE-ECCCcEEEEECCCCeEEEEEeCCCCCEEE
Q 047260          606 DLFCFCDN--DNEIQYWSINPFLCTHITKGG---TAQVRFQPRIGQLLAA-ASDKVVSIFDIETDRQTHSLQGHAELVNY  679 (784)
Q Consensus       606 ~ll~sgs~--dg~I~iwDl~~~~~~~~~~~~---v~~v~fsp~~~~Ll~~-s~Dg~I~IwDl~t~~~i~~l~~h~~~V~s  679 (784)
                      +++.+.+.  ...|++||+++++.+...+-.   +..--...-+..++.- -.+|.-.+||.++.+++..+. ..+.=..
T Consensus        57 ~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeGWg  135 (262)
T COG3823          57 HILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEGWG  135 (262)
T ss_pred             EEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCccee
Confidence            46665553  457999999987776554422   1111112233444443 458999999999888776665 2333344


Q ss_pred             EEEcCCCCEEEEEe-CCeEEEEeCCCCceEEEecc--CC---CceEEEEEecCCCEEEEEECCCeEEEEECCCCceEE--
Q 047260          680 ICWDTNGDYLASVS-QNLVKVWSMASGECIQELSS--NG---NQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMT--  751 (784)
Q Consensus       680 l~~spdg~~Lasgs-dd~I~IwDl~t~~~i~~l~~--~~---~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~--  751 (784)
                      ++.  |++-|+.+. ..++..-|.++...+.++..  .+   ..++.+.|- +|...+-.-.+..|...|..+++...  
T Consensus       136 Lt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~wi  212 (262)
T COG3823         136 LTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVAWI  212 (262)
T ss_pred             eec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEEEE
Confidence            443  344344433 33777777766544333321  11   122233332 23333333333344444555554432  


Q ss_pred             -----------ecccCCceEEEEEeCCCC-EEEEE
Q 047260          752 -----------IAAHENIISALAQSPVTG-MVASA  774 (784)
Q Consensus       752 -----------~~~h~~~V~slafspdg~-~LaSg  774 (784)
                                 -..|....+.+++.|++. ++++|
T Consensus       213 dlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         213 DLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             EccCCchhcCccccccccccceeecCcCCeEEEec
Confidence                       123556788999999874 55554

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=86.01  E-value=45  Score=41.28  Aligned_cols=127  Identities=10%  Similarity=0.061  Sum_probs=71.7

Q ss_pred             CeEEEEeCC-CCe---eEEeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeC--CCCCEEEEEEcCCCCE
Q 047260          615 NEIQYWSIN-PFL---CTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQG--HAELVNYICWDTNGDY  688 (784)
Q Consensus       615 g~I~iwDl~-~~~---~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~--h~~~V~sl~~spdg~~  688 (784)
                      |.++.|++- .++   .++...-.....++.|..+++++ +....+++||+-..++++....  ....|..+++.  +..
T Consensus       912 g~~ytyk~~~~g~~lellh~T~~~~~v~Ai~~f~~~~La-gvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~--~~R  988 (1205)
T KOG1898|consen  912 GFVYTYKFVRNGDKLELLHKTEIPGPVGAICPFQGRVLA-GVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY--GAR  988 (1205)
T ss_pred             CceEEEEEEecCceeeeeeccCCCccceEEeccCCEEEE-ecccEEEEeeCChHHHHhhhhhccCceEEEEEeec--ceE
Confidence            456666653 222   22222333344567777775554 5568999999988776655432  24567777764  555


Q ss_pred             EEEEe-CC--eEEEEeCCCCceEEEecc-CCCceEEEEEecCCCEEEEEECCCeEEEEECC
Q 047260          689 LASVS-QN--LVKVWSMASGECIQELSS-NGNQFHSCVFHPSYSTLLVVGGISSLELWNMA  745 (784)
Q Consensus       689 Lasgs-dd--~I~IwDl~t~~~i~~l~~-~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~  745 (784)
                      +++|. .+  ....|+-...+.+.-... -...|+++.+- |...++.+..-|.+.+..+.
T Consensus       989 I~VgD~qeSV~~~~y~~~~n~l~~fadD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen  989 IVVGDIQESVHFVRYRREDNQLIVFADDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred             EEEeeccceEEEEEEecCCCeEEEEeCCCccceeeEEEEe-cCCceeeccccCcEEEEECC
Confidence            66665 33  445565544444333322 23345555554 44457777777877776553

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=85.98  E-value=12  Score=39.14  Aligned_cols=126  Identities=15%  Similarity=0.234  Sum_probs=73.7

Q ss_pred             EEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeC--C--eEEEEeCCC--Cce-EEEe---ccCCCceEEEEEec
Q 047260          656 VSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQ--N--LVKVWSMAS--GEC-IQEL---SSNGNQFHSCVFHP  725 (784)
Q Consensus       656 I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsd--d--~I~IwDl~t--~~~-i~~l---~~~~~~I~sl~fsp  725 (784)
                      =.+||+.+++....-........+-.+.+||++|.+|++  +  .+++++...  ..+ ..+.   ........+...-|
T Consensus        48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~  127 (243)
T PF07250_consen   48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP  127 (243)
T ss_pred             EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence            357888877543322222223333456789999999884  3  788988654  111 1111   23345566777789


Q ss_pred             CCCEEEEEECCC-eEEEEECCC--CceEEe--cc------cCCceEEEEEeCCCCEEEEEECCCcEE
Q 047260          726 SYSTLLVVGGIS-SLELWNMAE--NKSMTI--AA------HENIISALAQSPVTGMVASASHDSSVK  781 (784)
Q Consensus       726 dg~~L~s~s~dg-~I~Iwdl~~--~~~~~~--~~------h~~~V~slafspdg~~LaSgs~DG~V~  781 (784)
                      ||+.|++|+... +..+|.-..  .....+  ..      ....--.+...|+|++|+.+..+..|.
T Consensus       128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~i~  194 (243)
T PF07250_consen  128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSIIY  194 (243)
T ss_pred             CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcEEE
Confidence            999999998875 566766532  112211  11      011112455679999999998776554

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=85.74  E-value=2.8  Score=31.18  Aligned_cols=31  Identities=35%  Similarity=0.716  Sum_probs=26.4

Q ss_pred             CceEEEEEcCC-C--CEEEEEeCCCeEEEEECCC
Q 047260          508 SKVTCCHFSSD-G--KLLASSGHDRKVVLWNMDT  538 (784)
Q Consensus       508 ~~V~~l~fspd-g--~~Lasgs~Dg~I~IWd~~t  538 (784)
                      +.|.+|.|||+ +  ++|+.+-.-|.|.|+|+.+
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            46899999984 4  5899888889999999984

It contains a characteristic DLL sequence motif.

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=85.13  E-value=61  Score=36.14  Aligned_cols=39  Identities=10%  Similarity=0.146  Sum_probs=19.3

Q ss_pred             EEEEECCCCceEEecccC-CceEEEEEeCCCCEEEEEECC
Q 047260          739 LELWNMAENKSMTIAAHE-NIISALAQSPVTGMVASASHD  777 (784)
Q Consensus       739 I~Iwdl~~~~~~~~~~h~-~~V~slafspdg~~LaSgs~D  777 (784)
                      +.+||+.+++-..+..-. ..-...+..-++++++.|+..
T Consensus       314 ~e~yd~~~~~W~~~~~lp~~r~~~~av~~~~~iyv~GG~~  353 (376)
T PRK14131        314 DEIYALVNGKWQKVGELPQGLAYGVSVSWNNGVLLIGGET  353 (376)
T ss_pred             hheEEecCCcccccCcCCCCccceEEEEeCCEEEEEcCCC
Confidence            567888776543222111 111122334457777777753

>PLN02193 nitrile-specifier protein

Probab=85.11  E-value=80  Score=36.45  Aligned_cols=146  Identities=11%  Similarity=0.101  Sum_probs=69.0

Q ss_pred             CCCEEEEEeCC-------CeEEEEECCCCceeeecCC--CC--CCeEEEEEccCCCEEEEEeCC-----CeEEEEcCCCC
Q 047260          518 DGKLLASSGHD-------RKVVLWNMDTLQTESTPED--HK--SVVTDVRFRPNSSQLATASVD-----KSVRLWDAANP  581 (784)
Q Consensus       518 dg~~Lasgs~D-------g~I~IWd~~t~~~~~~l~~--h~--~~It~i~fspdg~~Latgs~D-----g~I~IWdl~~~  581 (784)
                      ++.+++.|+.+       ..+.+||+.+.+-......  ..  .........-++.+++.|+.+     ..+.+||+.+.
T Consensus       175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~  254 (470)
T PLN02193        175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTN  254 (470)
T ss_pred             CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCC
Confidence            34556666643       2477888876443221100  00  011111112255666777655     35788888875


Q ss_pred             cceeeecc---CCCCCeEEEEEcCCCCcEEEEEeCCC-----eEEEEeCCCCeeEEeec------CC-eeEEEEecCCCE
Q 047260          582 NFCSQAYT---GHSSPIMSLDFHPKKTDLFCFCDNDN-----EIQYWSINPFLCTHITK------GG-TAQVRFQPRIGQ  646 (784)
Q Consensus       582 ~~~~~~~~---~h~~~V~sl~~sp~~~~ll~sgs~dg-----~I~iwDl~~~~~~~~~~------~~-v~~v~fsp~~~~  646 (784)
                      ........   .....-.+++..  +..+++.|+.++     .+..||+.+..-.....      .. -..++ .-++..
T Consensus       255 ~W~~l~~~~~~P~~R~~h~~~~~--~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~-~~~gki  331 (470)
T PLN02193        255 EWKLLTPVEEGPTPRSFHSMAAD--EENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLE-VVQGKV  331 (470)
T ss_pred             EEEEcCcCCCCCCCccceEEEEE--CCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEE-EECCcE
Confidence            53221111   001111122222  344666666543     46778877654332211      00 11122 224556


Q ss_pred             EEEEECC----CcEEEEECCCCeE
Q 047260          647 LLAAASD----KVVSIFDIETDRQ  666 (784)
Q Consensus       647 Ll~~s~D----g~I~IwDl~t~~~  666 (784)
                      ++.++.+    ..|.+||+.+.+-
T Consensus       332 yviGG~~g~~~~dv~~yD~~t~~W  355 (470)
T PLN02193        332 WVVYGFNGCEVDDVHYYDPVQDKW  355 (470)
T ss_pred             EEEECCCCCccCceEEEECCCCEE
Confidence            6666654    5689999987653

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=84.74  E-value=19  Score=43.15  Aligned_cols=69  Identities=12%  Similarity=0.087  Sum_probs=48.6

Q ss_pred             CceEEEEEe--cCCCEEEEEECCCeEEEEECCC--CceE--EecccCCceEEEEEeCCC---C---EEEEEECCCcEEEe
Q 047260          716 NQFHSCVFH--PSYSTLLVVGGISSLELWNMAE--NKSM--TIAAHENIISALAQSPVT---G---MVASASHDSSVKLW  783 (784)
Q Consensus       716 ~~I~sl~fs--pdg~~L~s~s~dg~I~Iwdl~~--~~~~--~~~~h~~~V~slafspdg---~---~LaSgs~DG~V~IW  783 (784)
                      ..++.++++  ...++||+++....|.||-...  .+..  ....|...|-+|+|-++.   .   .|++++-.|.|.+|
T Consensus       164 ~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~  243 (717)
T PF08728_consen  164 ASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTF  243 (717)
T ss_pred             CceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEE
Confidence            467899998  7777788888777777765443  2222  122466678899998754   2   77888899999887


Q ss_pred             C
Q 047260          784 K  784 (784)
Q Consensus       784 d  784 (784)
                      +
T Consensus       244 ~  244 (717)
T PF08728_consen  244 K  244 (717)
T ss_pred             E
Confidence            5

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=84.70  E-value=70  Score=40.59  Aligned_cols=249  Identities=16%  Similarity=0.155  Sum_probs=0.0

Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecC-CCCCCeEEEEEcc-CCCEEEEEeCCCeEEEEcCC---------
Q 047260          511 TCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPE-DHKSVVTDVRFRP-NSSQLATASVDKSVRLWDAA---------  579 (784)
Q Consensus       511 ~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~-~h~~~It~i~fsp-dg~~Latgs~Dg~I~IWdl~---------  579 (784)
                      ..++..|||. |++|..+-.=+|+--..-..+.++. .....-.-++.+| +|.+.++  .-.+=+||.++         
T Consensus       368 vala~a~DGS-l~VGDfNyIRRI~~dg~v~tIl~L~~t~~sh~Yy~AvsPvdgtlyvS--dp~s~qv~rv~sl~~~d~~~  444 (1899)
T KOG4659|consen  368 VALAYAPDGS-LIVGDFNYIRRISQDGQVSTILTLGLTDTSHSYYIAVSPVDGTLYVS--DPLSKQVWRVSSLEPQDSRN  444 (1899)
T ss_pred             eeEEEcCCCc-EEEccchheeeecCCCceEEEEEecCCCccceeEEEecCcCceEEec--CCCcceEEEeccCCcccccc


Q ss_pred             -------CCcceeeeccCCCCC----------eEEEEEcCCCCcEEEEEeCCCeEEEEeCC-------------------
Q 047260          580 -------NPNFCSQAYTGHSSP----------IMSLDFHPKKTDLFCFCDNDNEIQYWSIN-------------------  623 (784)
Q Consensus       580 -------~~~~~~~~~~~h~~~----------V~sl~~sp~~~~ll~sgs~dg~I~iwDl~-------------------  623 (784)
                             +++.|...-....+.          ...|+|+.+|..+|+-+.   .|++.|.+                   
T Consensus       445 N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk~g~lYfaD~t---~IR~iD~~giIstlig~~~~~~~p~~C  521 (1899)
T KOG4659|consen  445 NYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFDKMGNLYFADGT---RIRVIDTTGIISTLIGTTPDQHPPRTC  521 (1899)
T ss_pred             CeeEEeccCcCccccccccCcchhcccceeccCCceeEccCCcEEEeccc---EEEEeccCceEEEeccCCCCccCcccc


Q ss_pred             --CCeeEEeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEE------------------EEEEc
Q 047260          624 --PFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVN------------------YICWD  683 (784)
Q Consensus       624 --~~~~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~------------------sl~~s  683 (784)
                        ..+.....-.-.+.++++|-.+.|++-...=.++|-....-..+.--.-|-.-..                  +|+++
T Consensus       522 ~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~nvvlrit~~~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg  601 (1899)
T KOG4659|consen  522 AQITKLVDLQLEWPTSLAVDPMDNSLLVLDTNVVLRITVVHRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVG  601 (1899)
T ss_pred             ccccchhheeeecccceeecCCCCeEEEeecceEEEEccCccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeec


Q ss_pred             CCCCEEEEEeCC--eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE-EecccCCceE
Q 047260          684 TNGDYLASVSQN--LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM-TIAAHENIIS  760 (784)
Q Consensus       684 pdg~~Lasgsdd--~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~  760 (784)
                      ++|.+.++-+|+  .=+|-.+.+...+..+.+...++.|..--.+                |.-++.-. ...+|-..+.
T Consensus       602 ~~G~lyvaEsD~rriNrvr~~~tdg~i~ilaGa~S~C~C~~~~~c----------------dcfs~~~~~At~A~lnsp~  665 (1899)
T KOG4659|consen  602 TDGALYVAESDGRRINRVRKLSTDGTISILAGAKSPCSCDVAACC----------------DCFSLRDVAATQAKLNSPY  665 (1899)
T ss_pred             CCceEEEEeccchhhhheEEeccCceEEEecCCCCCCCcccccCC----------------ccccccchhhhccccCCcc


Q ss_pred             EEEEeCCCCEEEEEECCCcEE
Q 047260          761 ALAQSPVTGMVASASHDSSVK  781 (784)
Q Consensus       761 slafspdg~~LaSgs~DG~V~  781 (784)
                      ++|++|||.+++.-..+-+|+
T Consensus       666 alaVsPdg~v~IAD~gN~rIr  686 (1899)
T KOG4659|consen  666 ALAVSPDGDVIIADSGNSRIR  686 (1899)
T ss_pred             eEEECCCCcEEEecCCchhhh

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=84.70  E-value=4.5  Score=39.92  Aligned_cols=28  Identities=18%  Similarity=0.285  Sum_probs=23.6

Q ss_pred             CceEEEEEeCCC------CEEEEEECCCcEEEeC
Q 047260          757 NIISALAQSPVT------GMVASASHDSSVKLWK  784 (784)
Q Consensus       757 ~~V~slafspdg------~~LaSgs~DG~V~IWd  784 (784)
                      ..|..++|||-|      -+|++...+|.|.||.
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~  119 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYG  119 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEe
Confidence            479999999954      3899999999999984

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>COG1770 PtrB Protease II [Amino acid transport and metabolism]

Probab=83.61  E-value=1e+02  Score=36.56  Aligned_cols=246  Identities=12%  Similarity=0.034  Sum_probs=0.0

Q ss_pred             ceEEEEEcCCCCEEEE-----EeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCe-----EEEEcC
Q 047260          509 KVTCCHFSSDGKLLAS-----SGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKS-----VRLWDA  578 (784)
Q Consensus       509 ~V~~l~fspdg~~Las-----gs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~-----I~IWdl  578 (784)
                      .+-.++.|||.+++|-     |...-+++|-|+.++..+...  -.+....++|.+|++.|+-...|..     |.-..+
T Consensus       130 ~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~--i~~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~h~~  207 (682)
T COG1770         130 SLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDE--ITNTSGSFAWAADGKTLFYTRLDENHRPDKVWRHRL  207 (682)
T ss_pred             eeeeeeeCCCCceEEEEEecccccEEEEEEEecccccccchh--hcccccceEEecCCCeEEEEEEcCCCCcceEEEEec


Q ss_pred             CC--CcceeeeccCCCCCeEEEEEcCCCCcEEEEEeC--CCeEEEEeCC----CCeeEEeecCCeeEEEEecCCCEEEEE
Q 047260          579 AN--PNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDN--DNEIQYWSIN----PFLCTHITKGGTAQVRFQPRIGQLLAA  650 (784)
Q Consensus       579 ~~--~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~--dg~I~iwDl~----~~~~~~~~~~~v~~v~fsp~~~~Ll~~  650 (784)
                      .+  ....+..-.....-..+|.-+..+.++++.++.  ...+++.+.+    ..+++..-...+.--.-+-...+++..
T Consensus       208 gt~~~~d~lvyeE~d~~f~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr~~g~eY~~eh~~d~f~i~s  287 (682)
T COG1770         208 GTPGSSDELVYEEKDDRFFLSVGRSRSEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPRENGVEYSVEHGGDRFYILS  287 (682)
T ss_pred             CCCCCcceEEEEcCCCcEEEEeeeccCCceEEEEcCCCcceeEEEEecCCCCCceEEEEEcCCCcEEeeeecCcEEEEEe


Q ss_pred             ECCC-cEEEEECCC---CeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC----eEEEEeCCCCceEEEeccCCCceEEEE
Q 047260          651 ASDK-VVSIFDIET---DRQTHSLQGHAELVNYICWDTNGDYLASVSQN----LVKVWSMASGECIQELSSNGNQFHSCV  722 (784)
Q Consensus       651 s~Dg-~I~IwDl~t---~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd----~I~IwDl~t~~~i~~l~~~~~~I~sl~  722 (784)
                      ..+| ..+|+....   ......+..|...+.--.++--..+|+.....    .|++++..+++....-.........+.
T Consensus       288 N~~gknf~l~~ap~~~~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~glp~v~v~~~~~~~~~~i~f~~~ay~~~l~  367 (682)
T COG1770         288 NADGKNFKLVRAPVSADKSNWRELIPHREDVRLEGVDLFADHLVLLERQEGLPRVVVRDRKTGEERGIAFDDEAYSAGLS  367 (682)
T ss_pred             cCCCcceEEEEccCCCChhcCeeeeccCCCceeeeeeeeccEEEEEecccCCceEEEEecCCCceeeEEecchhhhcccc


Q ss_pred             Eec--CCCEEEEEECC----CeEEEEECCCCceEEecccC
Q 047260          723 FHP--SYSTLLVVGGI----SSLELWNMAENKSMTIAAHE  756 (784)
Q Consensus       723 fsp--dg~~L~s~s~d----g~I~Iwdl~~~~~~~~~~h~  756 (784)
                      .++  +...|-..-+.    .++.=+|+.+++...+....
T Consensus       368 ~~~e~~s~~lR~~ysS~ttP~~~~~~dm~t~er~~Lkqqe  407 (682)
T COG1770         368 GNPEFDSDRLRYSYSSMTTPATLFDYDMATGERTLLKQQE  407 (682)
T ss_pred             CCCCCCCccEEEEeecccccceeEEeeccCCcEEEEEecc

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	784
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		6e-27
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		3e-07
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		1e-20
2h9l_A	329	Wdr5delta23 Length = 329		6e-20
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		6e-20
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		3e-06
2gnq_A	336	Structure Of Wdr5 Length = 336		1e-19
2gnq_A	336	Structure Of Wdr5 Length = 336		2e-06
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		1e-19
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		2e-06
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		1e-19
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		3e-06
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		2e-19
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		3e-06
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		2e-19
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		3e-06
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		2e-19
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		3e-06
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		2e-19
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		3e-06
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		2e-19
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		3e-06
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		2e-19
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		3e-06
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		3e-19
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		3e-06
2g99_A	308	Structural Basis For The Specific Recognition Of Me		3e-19
2g99_A	308	Structural Basis For The Specific Recognition Of Me		3e-06
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		3e-19
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		6e-19
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		2e-08
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		6e-19
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		6e-19
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		2e-15
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		1e-14
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		2e-14
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		2e-13
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		1e-09
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		4e-13
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		1e-05
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		1e-11
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		4e-06
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		9e-11
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		1e-10
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		4e-10
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		9e-04
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		4e-10
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		4e-10
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		4e-10
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		8e-04
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		4e-10
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		3e-09
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		3e-09
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		3e-09
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		4e-09
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		4e-09
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		4e-09
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		2e-08
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		1e-05
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		2e-08
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		3e-04
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		1e-07
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		1e-05
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		5e-05
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		2e-07
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		2e-05
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		3e-07
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		3e-07
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		4e-07
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		6e-07
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		8e-07
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		8e-07
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		1e-06
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		1e-06
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		7e-06
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		8e-06
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		2e-05
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		2e-05
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		2e-04
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		3e-05
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		3e-05
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		3e-05
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		4e-05
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		2e-04
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		5e-05
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		6e-05
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		6e-04
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		1e-04
4gqb_B	344	Crystal Structure Of The Human Prmt5:mep50 Complex		2e-04
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		2e-04
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		3e-04
3jrp_A	379	Sec13 With Nup145c (Aa109-179) Insertion Blade Leng		5e-04
2pm9_B	297	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		6e-04
2pm6_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		6e-04
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		9e-04

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score =  119 bits (298), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 92/287 (32%), Positives = 145/287 (50%), Gaps = 13/287 (4%)
Query: 502 CIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNS 561
            +   +S V    FS DG+ +AS+  D+ V LWN +  Q   T   H S V  V F P+ 
Sbjct: 93  TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDG 151
Query: 562 SQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWS 621
             +A+AS DK+V+LW+  N     Q  TGHSS +  + F P    +    D D  ++ W+
Sbjct: 152 QTIASASDDKTVKLWNR-NGQLL-QTLTGHSSSVWGVAFSPDGQTIASASD-DKTVKLWN 208
Query: 622 INPFLCTHITKGGTAQVR---FQPRIGQLLAAASD-KVVSIFDIETDRQTHSLQGHAELV 677
            N  L   +T G ++ VR   F P  GQ +A+ASD K V +++    +   +L GH+  V
Sbjct: 209 RNGQLLQTLT-GHSSSVRGVAFSPD-GQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSV 265
Query: 678 NYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGI 736
           N + +  +G  +AS S +  VK+W+  +G+ +Q L+ + +      F P   T+      
Sbjct: 266 NGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDD 324
Query: 737 SSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKLW 783
            +++LWN       T+  H + +  +A SP    +ASAS D +VKLW
Sbjct: 325 KTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 371

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 61/120 (50%), Gaps = 2/120 (1%)
Query: 665 RQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVF 723
           ++ + L+ H+  V  + +  +G  +AS S +  VK+W+  +G+ +Q L+ + +      F
Sbjct: 7   KERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAF 65
Query: 724 HPSYSTLLVVGGISSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKLW 783
            P   T+       +++LWN       T+  H + +  +A SP    +ASAS D +VKLW
Sbjct: 66  SPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 125

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 84/323 (26%), Positives = 160/323 (49%), Gaps = 34/323 (10%)
Query: 484 SPEHQKQPT-----KGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDT 538
           SPE Q +PT         F   G  ++    V+   FS +G+ LASS  D+ + +W    
Sbjct: 5   SPEFQSKPTPVKPNYALKFTLAGHTKA----VSSVKFSPNGEWLASSSADKLIKIWGAYD 60
Query: 539 LQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSL 598
            + E T   HK  ++DV +  +S+ L +AS DK++++WD ++   C +   GHS+ +   
Sbjct: 61  GKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCC 119
Query: 599 DFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGT---AQVRFQPRIGQLLAAAS-DK 654
           +F+P +++L      D  ++ W +    C       +   + V F  R G L+ ++S D 
Sbjct: 120 NFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDG 177
Query: 655 VVSIFDIETDRQTHSL-QGHAELVNYICWDTNGDY-LASVSQNLVKVWSMASGECIQELS 712
           +  I+D  + +   +L       V+++ +  NG Y LA+   N +K+W  + G+C++  +
Sbjct: 178 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 237
Query: 713 SNGNQFHSCVFHPSYSTLLVVGG---ISSLE-----LWNMAENKSM-TIAAHENIISALA 763
            + N+ + C+F    +   V GG   +S  E     +WN+   + +  +  H +++ + A
Sbjct: 238 GHKNEKY-CIF----ANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 292
Query: 764 QSPVTGMVASAS--HDSSVKLWK 784
             P   ++ASA+  +D ++KLWK
Sbjct: 293 CHPTENIIASAALENDKTIKLWK 315

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 96.3 bits (238), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 85/329 (25%), Positives = 161/329 (48%), Gaps = 30/329 (9%)
Query: 474 GRE-LYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVV 532
           GRE LY     S     +P     F   G  ++    V+   FS +G+ LASS  D+ + 
Sbjct: 10  GRENLYFQGTQSKPTPVKPNYALKFTLAGHTKA----VSSVKFSPNGEWLASSSADKLIK 65
Query: 533 LWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHS 592
           +W     + E T   HK  ++DV +  +S+ L +AS DK++++WD ++   C +   GHS
Sbjct: 66  IWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHS 124
Query: 593 SPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGT---AQVRFQPRIGQLLA 649
           + +   +F+P +++L      D  ++ W +    C       +   + V F  R G L+ 
Sbjct: 125 NYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSLIV 182
Query: 650 AAS-DKVVSIFDIETDRQTHSL-QGHAELVNYICWDTNGDY-LASVSQNLVKVWSMASGE 706
           ++S D +  I+D  + +   +L       V+++ +  NG Y LA+   N +K+W  + G+
Sbjct: 183 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK 242
Query: 707 CIQELSSNGNQFHSCVFHPSYSTLLVVGG---ISSLE-----LWNMAENKSM-TIAAHEN 757
           C++  + + N+ + C+F    +   V GG   +S  E     +WN+   + +  +  H +
Sbjct: 243 CLKTYTGHKNEKY-CIF----ANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 297
Query: 758 IISALAQSPVTGMVASAS--HDSSVKLWK 784
           ++ + A  P   ++ASA+  +D ++KLWK
Sbjct: 298 VVISTACHPTENIIASAALENDKTIKLWK 326

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 96.3 bits (238), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 150/292 (51%), Gaps = 25/292 (8%)
Query: 510 VTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASV 569
           V+   FS +G+ LASS  D+ + +W     + E T   HK  ++DV +  +S+ L +AS 
Sbjct: 29  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 88
Query: 570 DKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTH 629
           DK++++WD ++   C +   GHS+ +   +F+P +++L      D  ++ W +   +C  
Sbjct: 89  DKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGMCLK 146
Query: 630 ITKGGT---AQVRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHSL-QGHAELVNYICWDT 684
                +   + V F  R G L+ ++S D +  I+D  + +   +L       V+++ +  
Sbjct: 147 TLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 205
Query: 685 NGDY-LASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGG---ISSLE 740
           NG Y LA+   N +K+W  + G+C++  + + N+ + C+F    +   V GG   +S  E
Sbjct: 206 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIF----ANFSVTGGKWIVSGSE 260
Query: 741 -----LWNMAENKSM-TIAAHENIISALAQSPVTGMVASAS--HDSSVKLWK 784
                +WN+   + +  +  H +++ + A  P   ++ASA+  +D ++KLWK
Sbjct: 261 DNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 312

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 61/117 (52%), Gaps = 2/117 (1%)
Query: 669 SLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSY 727
           +L GH + V+ + +  NG++LAS S + L+K+W    G+  + +S +        +    
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 728 STLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLW 783
           + L+      +L++W+++  K + T+  H N +     +P + ++ S S D SV++W
Sbjct: 81  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 95.5 bits (236), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 149/292 (51%), Gaps = 25/292 (8%)
Query: 510 VTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASV 569
           V+   FS +G+ LASS  D+ + +W     + E T   HK  ++DV +  +S+ L +AS 
Sbjct: 50  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 109
Query: 570 DKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTH 629
           DK++++WD ++   C +   GHS+ +   +F+P +++L      D  ++ W +    C  
Sbjct: 110 DKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLK 167
Query: 630 ITKGGT---AQVRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHSL-QGHAELVNYICWDT 684
                +   + V F  R G L+ ++S D +  I+D  + +   +L       V+++ +  
Sbjct: 168 TLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 226
Query: 685 NGDY-LASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGG---ISSLE 740
           NG Y LA+   N +K+W  + G+C++  + + N+ + C+F    +   V GG   +S  E
Sbjct: 227 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIF----ANFSVTGGKWIVSGSE 281
Query: 741 -----LWNMAENKSM-TIAAHENIISALAQSPVTGMVASAS--HDSSVKLWK 784
                +WN+   + +  +  H +++ + A  P   ++ASA+  +D ++KLWK
Sbjct: 282 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 333

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 61/117 (52%), Gaps = 2/117 (1%)
Query: 669 SLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSY 727
           +L GH + V+ + +  NG++LAS S + L+K+W    G+  + +S +        +    
Sbjct: 42  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 101
Query: 728 STLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLW 783
           + L+      +L++W+++  K + T+  H N +     +P + ++ S S D SV++W
Sbjct: 102 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 158

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 149/292 (51%), Gaps = 25/292 (8%)
Query: 510 VTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASV 569
           V+   FS +G+ LASS  D+ + +W     + E T   HK  ++DV +  +S+ L +AS 
Sbjct: 48  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 107
Query: 570 DKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTH 629
           DK++++WD ++   C +   GHS+ +   +F+P +++L      D  ++ W +    C  
Sbjct: 108 DKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLK 165
Query: 630 ITKGGT---AQVRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHSL-QGHAELVNYICWDT 684
                +   + V F  R G L+ ++S D +  I+D  + +   +L       V+++ +  
Sbjct: 166 TLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 224
Query: 685 NGDY-LASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGG---ISSLE 740
           NG Y LA+   N +K+W  + G+C++  + + N+ + C+F    +   V GG   +S  E
Sbjct: 225 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIF----ANFSVTGGKWIVSGSE 279
Query: 741 -----LWNMAENKSM-TIAAHENIISALAQSPVTGMVASAS--HDSSVKLWK 784
                +WN+   + +  +  H +++ + A  P   ++ASA+  +D ++KLWK
Sbjct: 280 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 331

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 61/117 (52%), Gaps = 2/117 (1%)
Query: 669 SLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSY 727
           +L GH + V+ + +  NG++LAS S + L+K+W    G+  + +S +        +    
Sbjct: 40  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 99
Query: 728 STLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLW 783
           + L+      +L++W+++  K + T+  H N +     +P + ++ S S D SV++W
Sbjct: 100 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 156

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 150/292 (51%), Gaps = 25/292 (8%)
Query: 510 VTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASV 569
           V+   FS +G+ LASS  D+ + +W     + E T   HK  ++DV +  +S+ L +AS 
Sbjct: 29  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 88
Query: 570 DKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTH 629
           DK++++WD ++   C +   GHS+ +   +F+P +++L      D  ++ W +   +C  
Sbjct: 89  DKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGMCLK 146
Query: 630 ITKGGT---AQVRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHSL-QGHAELVNYICWDT 684
                +   + V F  R G L+ ++S D +  I+D  + +   +L       V+++ +  
Sbjct: 147 TLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 205
Query: 685 NGDY-LASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGG---ISSLE 740
           NG Y LA+   N +K+W  + G+C++  + + N+ + C+F    +   V GG   +S  E
Sbjct: 206 NGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKY-CIF----ANFSVTGGKWIVSGSE 260
Query: 741 -----LWNMAENKSM-TIAAHENIISALAQSPVTGMVASAS--HDSSVKLWK 784
                +WN+   + +  +  H +++ + A  P   ++ASA+  +D ++KLWK
Sbjct: 261 DNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 312

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 61/117 (52%), Gaps = 2/117 (1%)
Query: 669 SLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSY 727
           +L GH + V+ + +  NG++LAS S + L+K+W    G+  + +S +        +    
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 728 STLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLW 783
           + L+      +L++W+++  K + T+  H N +     +P + ++ S S D SV++W
Sbjct: 81  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 94.7 bits (234), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 149/292 (51%), Gaps = 25/292 (8%)
Query: 510 VTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASV 569
           V+   FS +G+ LASS  D+ + +W     + E T   HK  ++DV +  +S+ L +AS 
Sbjct: 32  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 91
Query: 570 DKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTH 629
           DK++++WD ++   C +   GHS+ +   +F+P +++L      D  ++ W +    C  
Sbjct: 92  DKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLK 149
Query: 630 ITKGGT---AQVRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHSL-QGHAELVNYICWDT 684
                +   + V F  R G L+ ++S D +  I+D  + +   +L       V+++ +  
Sbjct: 150 TLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 208
Query: 685 NGDY-LASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGG---ISSLE 740
           NG Y LA+   N +K+W  + G+C++  + + N+ + C+F    +   V GG   +S  E
Sbjct: 209 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIF----ANFSVTGGKWIVSGSE 263
Query: 741 -----LWNMAENKSM-TIAAHENIISALAQSPVTGMVASAS--HDSSVKLWK 784
                +WN+   + +  +  H +++ + A  P   ++ASA+  +D ++KLWK
Sbjct: 264 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 315

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 61/117 (52%), Gaps = 2/117 (1%)
Query: 669 SLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSY 727
           +L GH + V+ + +  NG++LAS S + L+K+W    G+  + +S +        +    
Sbjct: 24  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 728 STLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLW 783
           + L+      +L++W+++  K + T+  H N +     +P + ++ S S D SV++W
Sbjct: 84  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 140

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 94.7 bits (234), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 149/292 (51%), Gaps = 25/292 (8%)
Query: 510 VTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASV 569
           V+   FS +G+ LASS  D+ + +W     + E T   HK  ++DV +  +S+ L +AS 
Sbjct: 31  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 90
Query: 570 DKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTH 629
           DK++++WD ++   C +   GHS+ +   +F+P +++L      D  ++ W +    C  
Sbjct: 91  DKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLK 148
Query: 630 ITKGGT---AQVRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHSL-QGHAELVNYICWDT 684
                +   + V F  R G L+ ++S D +  I+D  + +   +L       V+++ +  
Sbjct: 149 TLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 207
Query: 685 NGDY-LASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGG---ISSLE 740
           NG Y LA+   N +K+W  + G+C++  + + N+ + C+F    +   V GG   +S  E
Sbjct: 208 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIF----ANFSVTGGKWIVSGSE 262
Query: 741 -----LWNMAENKSM-TIAAHENIISALAQSPVTGMVASAS--HDSSVKLWK 784
                +WN+   + +  +  H +++ + A  P   ++ASA+  +D ++KLWK
Sbjct: 263 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 314

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 61/117 (52%), Gaps = 2/117 (1%)
Query: 669 SLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSY 727
           +L GH + V+ + +  NG++LAS S + L+K+W    G+  + +S +        +    
Sbjct: 23  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 82
Query: 728 STLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLW 783
           + L+      +L++W+++  K + T+  H N +     +P + ++ S S D SV++W
Sbjct: 83  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 139

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 94.7 bits (234), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 149/292 (51%), Gaps = 25/292 (8%)
Query: 510 VTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASV 569
           V+   FS +G+ LASS  D+ + +W     + E T   HK  ++DV +  +S+ L +AS 
Sbjct: 32  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 91
Query: 570 DKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTH 629
           DK++++WD ++   C +   GHS+ +   +F+P +++L      D  ++ W +    C  
Sbjct: 92  DKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLK 149
Query: 630 ITKGGT---AQVRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHSL-QGHAELVNYICWDT 684
                +   + V F  R G L+ ++S D +  I+D  + +   +L       V+++ +  
Sbjct: 150 TLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 208
Query: 685 NGDY-LASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGG---ISSLE 740
           NG Y LA+   N +K+W  + G+C++  + + N+ + C+F    +   V GG   +S  E
Sbjct: 209 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIF----ANFSVTGGKWIVSGSE 263
Query: 741 -----LWNMAENKSM-TIAAHENIISALAQSPVTGMVASAS--HDSSVKLWK 784
                +WN+   + +  +  H +++ + A  P   ++ASA+  +D ++KLWK
Sbjct: 264 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 315

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 61/117 (52%), Gaps = 2/117 (1%)
Query: 669 SLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSY 727
           +L GH + V+ + +  NG++LAS S + L+K+W    G+  + +S +        +    
Sbjct: 24  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 728 STLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLW 783
           + L+      +L++W+++  K + T+  H N +     +P + ++ S S D SV++W
Sbjct: 84  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 140

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 149/292 (51%), Gaps = 25/292 (8%)
Query: 510 VTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASV 569
           V+   FS +G+ LASS  D+ + +W     + E T   HK  ++DV +  +S+ L +AS 
Sbjct: 25  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 84
Query: 570 DKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTH 629
           DK++++WD ++   C +   GHS+ +   +F+P +++L      D  ++ W +    C  
Sbjct: 85  DKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLK 142
Query: 630 ITKGGT---AQVRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHSL-QGHAELVNYICWDT 684
                +   + V F  R G L+ ++S D +  I+D  + +   +L       V+++ +  
Sbjct: 143 TLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 201
Query: 685 NGDY-LASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGG---ISSLE 740
           NG Y LA+   N +K+W  + G+C++  + + N+ + C+F    +   V GG   +S  E
Sbjct: 202 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIF----ANFSVTGGKWIVSGSE 256
Query: 741 -----LWNMAENKSM-TIAAHENIISALAQSPVTGMVASAS--HDSSVKLWK 784
                +WN+   + +  +  H +++ + A  P   ++ASA+  +D ++KLWK
Sbjct: 257 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 308

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 61/117 (52%), Gaps = 2/117 (1%)
Query: 669 SLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSY 727
           +L GH + V+ + +  NG++LAS S + L+K+W    G+  + +S +        +    
Sbjct: 17  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 76
Query: 728 STLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLW 783
           + L+      +L++W+++  K + T+  H N +     +P + ++ S S D SV++W
Sbjct: 77  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 133

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 149/292 (51%), Gaps = 25/292 (8%)
Query: 510 VTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASV 569
           V+   FS +G+ LASS  D+ + +W     + E T   HK  ++DV +  +S+ L +AS 
Sbjct: 27  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 86
Query: 570 DKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTH 629
           DK++++WD ++   C +   GHS+ +   +F+P +++L      D  ++ W +    C  
Sbjct: 87  DKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLK 144
Query: 630 ITKGGT---AQVRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHSL-QGHAELVNYICWDT 684
                +   + V F  R G L+ ++S D +  I+D  + +   +L       V+++ +  
Sbjct: 145 TLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 203
Query: 685 NGDY-LASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGG---ISSLE 740
           NG Y LA+   N +K+W  + G+C++  + + N+ + C+F    +   V GG   +S  E
Sbjct: 204 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIF----ANFSVTGGKWIVSGSE 258
Query: 741 -----LWNMAENKSM-TIAAHENIISALAQSPVTGMVASAS--HDSSVKLWK 784
                +WN+   + +  +  H +++ + A  P   ++ASA+  +D ++KLWK
Sbjct: 259 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 310

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 61/117 (52%), Gaps = 2/117 (1%)
Query: 669 SLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSY 727
           +L GH + V+ + +  NG++LAS S + L+K+W    G+  + +S +        +    
Sbjct: 19  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 78
Query: 728 STLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLW 783
           + L+      +L++W+++  K + T+  H N +     +P + ++ S S D SV++W
Sbjct: 79  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 135

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 149/292 (51%), Gaps = 25/292 (8%)
Query: 510 VTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASV 569
           V+   FS +G+ LASS  D+ + +W     + E T   HK  ++DV +  +S+ L +AS 
Sbjct: 26  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 85
Query: 570 DKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTH 629
           DK++++WD ++   C +   GHS+ +   +F+P +++L      D  ++ W +    C  
Sbjct: 86  DKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLK 143
Query: 630 ITKGGT---AQVRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHSL-QGHAELVNYICWDT 684
                +   + V F  R G L+ ++S D +  I+D  + +   +L       V+++ +  
Sbjct: 144 TLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 202
Query: 685 NGDY-LASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGG---ISSLE 740
           NG Y LA+   N +K+W  + G+C++  + + N+ + C+F    +   V GG   +S  E
Sbjct: 203 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIF----ANFSVTGGKWIVSGSE 257
Query: 741 -----LWNMAENKSM-TIAAHENIISALAQSPVTGMVASAS--HDSSVKLWK 784
                +WN+   + +  +  H +++ + A  P   ++ASA+  +D ++KLWK
Sbjct: 258 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 309

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 61/117 (52%), Gaps = 2/117 (1%)
Query: 669 SLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSY 727
           +L GH + V+ + +  NG++LAS S + L+K+W    G+  + +S +        +    
Sbjct: 18  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 77
Query: 728 STLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLW 783
           + L+      +L++W+++  K + T+  H N +     +P + ++ S S D SV++W
Sbjct: 78  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 134

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 94.0 bits (232), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 149/292 (51%), Gaps = 25/292 (8%)
Query: 510 VTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASV 569
           V+   FS +G+ LASS  D+ + +W     + E T   HK  ++DV +  +S+ L +AS 
Sbjct: 26  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 85
Query: 570 DKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTH 629
           DK++++WD ++   C +   GHS+ +   +F+P +++L      D  ++ W +    C  
Sbjct: 86  DKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLK 143
Query: 630 ITKGGT---AQVRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHSL-QGHAELVNYICWDT 684
                +   + V F  R G L+ ++S D +  I+D  + +   +L       V+++ +  
Sbjct: 144 TLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 202
Query: 685 NGDY-LASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGG---ISSLE 740
           NG Y LA+   N +K+W  + G+C++  + + N+ + C+F    +   V GG   +S  E
Sbjct: 203 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIF----ANFSVTGGKWIVSGSE 257
Query: 741 -----LWNMAENKSM-TIAAHENIISALAQSPVTGMVASAS--HDSSVKLWK 784
                +WN+   + +  +  H +++ + A  P   ++ASA+  +D ++KLWK
Sbjct: 258 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 309

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 61/117 (52%), Gaps = 2/117 (1%)
Query: 669 SLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSY 727
           +L GH + V+ + +  NG++LAS S + L+K+W    G+  + +S +        +    
Sbjct: 18  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 77
Query: 728 STLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLW 783
           + L+      +L++W+++  K + T+  H N +     +P + ++ S S D SV++W
Sbjct: 78  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 134

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 94.0 bits (232), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 149/292 (51%), Gaps = 25/292 (8%)
Query: 510 VTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASV 569
           V+   FS +G+ LASS  D+ + +W     + E T   HK  ++DV +  +S+ L +AS 
Sbjct: 22  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 81
Query: 570 DKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTH 629
           DK++++WD ++   C +   GHS+ +   +F+P +++L      D  ++ W +    C  
Sbjct: 82  DKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLK 139
Query: 630 ITKGGT---AQVRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHSL-QGHAELVNYICWDT 684
                +   + V F  R G L+ ++S D +  I+D  + +   +L       V+++ +  
Sbjct: 140 TLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 198
Query: 685 NGDY-LASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGG---ISSLE 740
           NG Y LA+   N +K+W  + G+C++  + + N+ + C+F    +   V GG   +S  E
Sbjct: 199 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIF----ANFSVTGGKWIVSGSE 253
Query: 741 -----LWNMAENKSM-TIAAHENIISALAQSPVTGMVASAS--HDSSVKLWK 784
                +WN+   + +  +  H +++ + A  P   ++ASA+  +D ++KLWK
Sbjct: 254 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 305

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 61/117 (52%), Gaps = 2/117 (1%)
Query: 669 SLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSY 727
           +L GH + V+ + +  NG++LAS S + L+K+W    G+  + +S +        +    
Sbjct: 14  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 73
Query: 728 STLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLW 783
           + L+      +L++W+++  K + T+  H N +     +P + ++ S S D SV++W
Sbjct: 74  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 130

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 149/292 (51%), Gaps = 25/292 (8%)
Query: 510 VTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASV 569
           V+   FS +G+ LA+S  D+ + +W     + E T   HK  ++DV +  +S+ L +AS 
Sbjct: 29  VSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 88
Query: 570 DKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTH 629
           DK++++WD ++   C +   GHS+ +   +F+P +++L      D  ++ W +    C  
Sbjct: 89  DKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLK 146
Query: 630 ITKGGT---AQVRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHSL-QGHAELVNYICWDT 684
                +   + V F  R G L+ ++S D +  I+D  + +   +L       V+++ +  
Sbjct: 147 TLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 205
Query: 685 NGDY-LASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGG---ISSLE 740
           NG Y LA+   N +K+W  + G+C++  + + N+ + C+F    +   V GG   +S  E
Sbjct: 206 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIF----ANFSVTGGKWIVSGSE 260
Query: 741 -----LWNMAENKSM-TIAAHENIISALAQSPVTGMVASAS--HDSSVKLWK 784
                +WN+   + +  +  H +++ + A  P   ++ASA+  +D ++KLWK
Sbjct: 261 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 312

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 93.2 bits (230), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 124/303 (40%), Gaps = 27/303 (8%)
Query: 507 NSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLAT 566
            S VT   F     ++ S+  D  + +W+ +T   E T + H   V D+ F  +   LA+
Sbjct: 108 RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLAS 167
Query: 567 ASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFL 626
            S D +++LWD      C +   GH   + S+   P   D       D  I+ W +    
Sbjct: 168 CSADMTIKLWDFQGFE-CIRTMHGHDHNVSSVSIMPN-GDHIVSASRDKTIKMWEVQTGY 225
Query: 627 CTHITKGGTAQVRF-QP-RIGQLLAAAS-DKVVSIFDIETDRQTHSLQGHAELVNYICWD 683
           C     G    VR  +P + G L+A+ S D+ V ++ + T      L+ H  +V  I W 
Sbjct: 226 CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWA 285
Query: 684 TNGDY---------------------LASVSQNLVKVWSMASGECIQELSSNGNQFHSCV 722
               Y                     L+      +K+W +++G C+  L  + N     +
Sbjct: 286 PESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVL 345
Query: 723 FHPSYSTLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVK 781
           FH     +L      +L +W+    + M T+ AHE+ +++L        V + S D +VK
Sbjct: 346 FHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVK 405
Query: 782 LWK 784
           +W+
Sbjct: 406 VWE 408

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/263 (20%), Positives = 99/263 (37%), Gaps = 66/263 (25%)
Query: 587 AYTGHSSPIMSLDFHP-----------------------------KKTD----------- 606
           A +GH SP+  + FHP                               TD           
Sbjct: 103 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 162
Query: 607 -LFCFCDNDNEIQYWSINPFLCTHITKG---GTAQVRFQPRIGQLLAAASDKVVSIFDIE 662
            L   C  D  I+ W    F C     G     + V   P    +++A+ DK + +++++
Sbjct: 163 KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ 222
Query: 663 TDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSC 721
           T     +  GH E V  +  + +G  +AS S +  V+VW +A+ EC  EL  + +     
Sbjct: 223 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECI 282
Query: 722 VFHP--SYSTLLVVGGIS------------------SLELWNMAENKS-MTIAAHENIIS 760
            + P  SYS++    G                    ++++W+++     MT+  H+N + 
Sbjct: 283 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVR 342
Query: 761 ALAQSPVTGMVASASHDSSVKLW 783
            +        + S + D ++++W
Sbjct: 343 GVLFHSGGKFILSCADDKTLRVW 365

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 91.7 bits (226), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 149/292 (51%), Gaps = 25/292 (8%)
Query: 510 VTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASV 569
           V+   FS +G+ LASS  D+ + +W     + E T   HK  ++DV +  +S+ L +AS 
Sbjct: 29  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 88
Query: 570 DKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTH 629
           DK++++WD ++   C +   GHS+ +   +F+P +++L      D  ++ W +    C  
Sbjct: 89  DKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLK 146
Query: 630 ITKGGT---AQVRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHSL-QGHAELVNYICWDT 684
                +   + V F  R G L+ ++S D +  I+D  + +   +L       V+++ +  
Sbjct: 147 TLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 205
Query: 685 NGDY-LASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGG---ISSLE 740
           NG Y LA+   N +K+W  + G+C++  + + N+ + C+F    +   V GG   +S  E
Sbjct: 206 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIF----ANFSVTGGKWIVSGSE 260
Query: 741 -----LWNMAENKSM-TIAAHENIISALAQSPVTGMVASAS--HDSSVKLWK 784
                +WN+   + +  +  H +++ + A  P   ++ASA+  +D ++KL+K
Sbjct: 261 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLYK 312

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 149/292 (51%), Gaps = 25/292 (8%)
Query: 510 VTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASV 569
           V+   FS +G+ LASS  D+ + +W     + E T   HK  ++DV +  +S+ L +AS 
Sbjct: 29  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 88
Query: 570 DKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTH 629
           DK++++WD ++   C +   GHS+ +   +F+P +++L      D  ++ W +    C  
Sbjct: 89  DKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLK 146
Query: 630 ITKGGT---AQVRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHSL-QGHAELVNYICWDT 684
                +   + V F  R G L+ ++S D +  I+D  + +   +L       V+++ +  
Sbjct: 147 TLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 205
Query: 685 NGDY-LASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGG---ISSLE 740
           NG Y LA+   N +K+W  + G+C++  + + N+ + C+F    +   V GG   +S  E
Sbjct: 206 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIF----ANFSVTGGKWIVSGSE 260
Query: 741 -----LWNMAENKSM-TIAAHENIISALAQSPVTGMVASAS--HDSSVKLWK 784
                +WN+   + +  +  H +++ + A  P   ++ASA+  +D ++KL+K
Sbjct: 261 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLFK 312

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 81.6 bits (200), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/280 (24%), Positives = 130/280 (46%), Gaps = 20/280 (7%)
Query: 510 VTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASV 569
           +TC  F   G  + S   D  + +W+  T +   T   H   V   + R N   + + S 
Sbjct: 122 ITCLQFC--GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNI--IISGST 177
Query: 570 DKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTH 629
           D+++++W+A     C     GH+S +  +  H K+         D  ++ W I    C H
Sbjct: 178 DRTLKVWNAETGE-CIHTLYGHTSTVRCMHLHEKRV---VSGSRDATLRVWDIETGQCLH 233
Query: 630 ITKGGTAQVRFQPRIGQ-LLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDY 688
           +  G  A VR     G+ +++ A D +V ++D ET+   H+LQGH   V  + +D  G +
Sbjct: 234 VLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD--GIH 291
Query: 689 LASVSQNL-VKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAEN 747
           + S S +  ++VW + +G CI  L+  G+Q  +       + L+     S++++W++   
Sbjct: 292 VVSGSLDTSIRVWDVETGNCIHTLT--GHQSLTSGMELKDNILVSGNADSTVKIWDIKTG 349
Query: 748 KSMTIA----AHENIISALAQSPVTGMVASASHDSSVKLW 783
           + +        H++ ++ L  +     V ++S D +VKLW
Sbjct: 350 QCLQTLQGPNKHQSAVTCLQFNK--NFVITSSDDGTVKLW 387

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/301 (22%), Positives = 128/301 (42%), Gaps = 20/301 (6%)
Query: 503 IRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSS 562
           +R     V    FS DG+ +AS G D+ + ++  +T +     + H+  V    F  + S
Sbjct: 618 VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDS 677
Query: 563 QLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFC-DNDNEIQYWS 621
            +AT S DK V++WD+A        Y  HS  +    F  K   L      ND  ++ W 
Sbjct: 678 YIATCSADKKVKIWDSATGKLV-HTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD 736
Query: 622 INPFLCTHITKGGTAQV---RFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQ------- 671
           +N   C +   G T  V   RF P    L + ++D  + ++D+ +  +  S+        
Sbjct: 737 LNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLS 796
Query: 672 -----GHAELVNYIC-WDTNGDYLASVSQNLVKVWSMASGECIQEL-SSNGNQFHSCVFH 724
                   E++   C W  +GD +   ++N V ++ + +   + E+ + + +    C F 
Sbjct: 797 SEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFS 856
Query: 725 PSYSTLLVVGGISSLELWNM-AENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKLW 783
           P     ++      +ELWN+ +  K      H + +  +  SP      +AS D ++++W
Sbjct: 857 PYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVW 916
Query: 784 K 784
           +
Sbjct: 917 E 917

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 78.2 bits (191), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/301 (22%), Positives = 128/301 (42%), Gaps = 20/301 (6%)
Query: 503 IRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSS 562
           +R     V    FS DG+ +AS G D+ + ++  +T +     + H+  V    F  + S
Sbjct: 611 VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDS 670
Query: 563 QLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFC-DNDNEIQYWS 621
            +AT S DK V++WD+A        Y  HS  +    F  K   L      ND  ++ W 
Sbjct: 671 YIATCSADKKVKIWDSATGKLV-HTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD 729
Query: 622 INPFLCTHITKGGTAQV---RFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQ------- 671
           +N   C +   G T  V   RF P    L + ++D  + ++D+ +  +  S+        
Sbjct: 730 LNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLS 789
Query: 672 -----GHAELVNYIC-WDTNGDYLASVSQNLVKVWSMASGECIQEL-SSNGNQFHSCVFH 724
                   E++   C W  +GD +   ++N V ++ + +   + E+ + + +    C F 
Sbjct: 790 SEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFS 849
Query: 725 PSYSTLLVVGGISSLELWNM-AENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKLW 783
           P     ++      +ELWN+ +  K      H + +  +  SP      +AS D ++++W
Sbjct: 850 PYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVW 909
Query: 784 K 784
           +
Sbjct: 910 E 910

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 115/277 (41%), Gaps = 39/277 (14%)
Query: 519 GKLLASSGHDRKVVLWNM--DTLQTEST-PEDHKSVVTDVRFRPNSSQLATASVDKSVRL 575
           G LLAS G DR++ +W    D+   +S   E H+  V  V + P  + LA+AS D +  +
Sbjct: 28  GTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCI 87
Query: 576 WDAANPNF-CSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSI---NPFLCTHIT 631
           W     +F C     GH + + S+ + P   +L   C  D  +  W +   + + C  + 
Sbjct: 88  WKKNQDDFECVTTLEGHENEVKSVAWAPSG-NLLATCSRDKSVWVWEVDEEDEYECVSVL 146
Query: 632 KGGTAQVR---FQPRIGQLLAAASDKVVSIFDIETDRQT--HSLQGHAELVNYICWDTNG 686
              T  V+   + P    L +A+ D  V ++  E D      +L+GH   V  + +D +G
Sbjct: 147 NSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSG 206
Query: 687 DYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMA 745
             LAS S +  V++W        Q L  N          PS+  +  + G          
Sbjct: 207 QRLASCSDDRTVRIWR-------QYLPGNEQGVACSGSDPSWKCICTLSGF--------- 250
Query: 746 ENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKL 782
                    H   I  +A   +TG +A+A  D ++++
Sbjct: 251 ---------HSRTIYDIAWCQLTGALATACGDDAIRV 278

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 92/202 (45%), Gaps = 16/202 (7%)
Query: 598 LDFHPKKTDLFCFCDNDNEIQYWSI--NPFLCTHITKGG----TAQVRFQPRIGQLLAAA 651
           L ++P  T L   C  D  I+ W    + ++C  +   G      +V + P    L +A+
Sbjct: 22  LAWNPAGT-LLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASAS 80
Query: 652 SDKVVSIFDIETD--RQTHSLQGHAELVNYICWDTNGDYLASVSQNL-VKVWSMASG--- 705
            D    I+    D      +L+GH   V  + W  +G+ LA+ S++  V VW +      
Sbjct: 81  FDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEY 140
Query: 706 ECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM---TIAAHENIISAL 762
           EC+  L+S+       V+HPS   L       +++L+   E+  +   T+  HE+ + +L
Sbjct: 141 ECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSL 200
Query: 763 AQSPVTGMVASASHDSSVKLWK 784
           A  P    +AS S D +V++W+
Sbjct: 201 AFDPSGQRLASCSDDRTVRIWR 222

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 73.6 bits (179), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 100/216 (46%), Gaps = 16/216 (7%)
Query: 546 EDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKT 605
           E H + V+DV    N +   +AS D S+RLW+  N   C   + GH+  ++S+ F P   
Sbjct: 64  EGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQ-CQYKFLGHTKDVLSVAFSPDNR 122
Query: 606 DLFCFCDNDNEIQYWSINPFLCTHITKGG----TAQVRFQPRIGQ--LLAAASDKVVSIF 659
            +      DN ++ W++       +++G      + VRF P +    +++   D +V ++
Sbjct: 123 QIVSG-GRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVW 181
Query: 660 DIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQF 718
           D+ T R    L+GH   V  +    +G   AS  ++ + ++W +  GE + E+++ G   
Sbjct: 182 DLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAA-GAPI 240
Query: 719 HSCVFHPSYSTLLVV--GGISSLELWNMAENKSMTI 752
           +   F P+   +      GI   +L    ENK + +
Sbjct: 241 NQICFSPNRYWMCAATEKGIRIFDL----ENKDIIV 272

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 78/142 (54%), Gaps = 7/142 (4%)
Query: 648 LAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQ-NLVKVWSMASGE 706
           ++A+ D  + +++++  +  +   GH + V  + +  +   + S  + N ++VW++  GE
Sbjct: 83  VSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNV-KGE 141
Query: 707 CIQELSSNGN-QFHSCV-FHPSY-STLLVVGGISSL-ELWNMAENKSMT-IAAHENIISA 761
           C+  LS   +  + SCV F PS  + ++V GG  +L ++W++A  + +T +  H N +++
Sbjct: 142 CMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTS 201
Query: 762 LAQSPVTGMVASASHDSSVKLW 783
           +  SP   + AS+  D   +LW
Sbjct: 202 VTVSPDGSLCASSDKDGVARLW 223

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 96/203 (47%), Gaps = 19/203 (9%)
Query: 510 VTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASV 569
           V C  +  D +++ +   D  V +W+++T +  +T   H   V  +RF  N+  + T S 
Sbjct: 176 VLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRF--NNGMMVTCSK 231
Query: 570 DKSVRLWDAANPNFCS--QAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLC 627
           D+S+ +WD A+P   +  +   GH + +  +DF  K          D  I+ W  N   C
Sbjct: 232 DRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK---YIVSASGDRTIKVW--NTSTC 286
Query: 628 THIT-----KGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICW 682
             +      K G A ++++ R+  +++ +SD  + ++DIE       L+GH ELV  I +
Sbjct: 287 EFVRTLNGHKRGIACLQYRDRL--VVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF 344
Query: 683 DTNGDYLASVSQNLVKVWSMASG 705
           D N   ++      +KVW + + 
Sbjct: 345 D-NKRIVSGAYDGKIKVWDLVAA 366

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 58/301 (19%), Positives = 116/301 (38%), Gaps = 40/301 (13%)
Query: 504 RSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQ 563
           RS  SK   C    D + + S   D  + +W+ +TL+ +     H   V  +++  +   
Sbjct: 129 RSETSKGVYC-LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERV 185
Query: 564 LATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYW--- 620
           + T S D +VR+WD  N          H   ++ L F+     +   C  D  I  W   
Sbjct: 186 IITGSSDSTVRVWDV-NTGEMLNTLIHHCEAVLHLRFN---NGMMVTCSKDRSIAVWDMA 241
Query: 621 -----SINPFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAE 675
                ++   L  H  +     V F  +   +++A+ D+ + +++  T     +L GH  
Sbjct: 242 SPTDITLRRVLVGH--RAAVNVVDFDDK--YIVSASGDRTIKVWNTSTCEFVRTLNGHKR 297
Query: 676 LVNYICWDTNGDYLAS-VSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVG 734
            +   C       + S  S N +++W +  G C++ L  +  +   C+    +    +V 
Sbjct: 298 GIA--CLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGH-EELVRCI---RFDNKRIVS 351
Query: 735 GI--SSLELWNMAENKS----------MTIAAHENIISALAQSPVTGMVASASHDSSVKL 782
           G     +++W++                T+  H   +  L        + S+SHD ++ +
Sbjct: 352 GAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF--QIVSSSHDDTILI 409
Query: 783 W 783
           W
Sbjct: 410 W 410

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 65.9 bits (159), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 77/328 (23%), Positives = 134/328 (40%), Gaps = 57/328 (17%)
Query: 508 SKVTCCHFSSDGKLLASSGHDRKVVLWNM-------------------DTLQTESTPEDH 548
           S V C  FS+DG+ LA+ G ++   ++ +                   + L T S+P   
Sbjct: 65  SVVCCVKFSNDGEYLAT-GCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSD 123
Query: 549 KSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLF 608
             + + V F P+   LAT + D+ +R+WD  N         GH   I SLD+ P   D  
Sbjct: 124 LYIRS-VCFSPDGKFLATGAEDRLIRIWDIENRKIV-MILQGHEQDIYSLDYFPSG-DKL 180
Query: 609 CFCDNDNEIQYWSINPFLC--THITKGGTAQVRFQPRIGQLLAAAS-DKVVSIFDIET-- 663
                D  ++ W +    C  T   + G   V   P  G+ +AA S D+ V ++D ET  
Sbjct: 181 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 240
Query: 664 -----DRQTHSLQGHAELVNYICWDTNGDYLASVSQNL-VKVWSMA------------SG 705
                D +  S  GH + V  + +  +G  + S S +  VK+W++             SG
Sbjct: 241 LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG 300
Query: 706 ECIQELSSNGNQFHSCVFHPSYSTLLVVGGISS--LELWNMAE-NKSMTIAAHENIISAL 762
            C  E++  G++        + +   ++ G     +  W+    N  + +  H N + ++
Sbjct: 301 TC--EVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISV 358
Query: 763 AQS------PVTGMVASASHDSSVKLWK 784
           A +      P   + A+ S D   ++WK
Sbjct: 359 AVANGSSLGPEYNVFATGSGDCKARIWK 386

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 61/241 (25%), Positives = 105/241 (43%), Gaps = 20/241 (8%)
Query: 501 GCIRSRNSKVTCCHFSS-DGKLLASSGHDRKVVLWNMD-TLQTESTP----EDHKSVVTD 554
           G +   N  VT    S+    LL S+  D+ ++ W +    Q    P    + H  +V D
Sbjct: 11  GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70
Query: 555 VRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDND 614
                + +   +AS DK++RLWD A      Q + GH S +MS+D   KK  +      D
Sbjct: 71  CTLTADGAYALSASWDKTLRLWDVATGE-TYQRFVGHKSDVMSVDID-KKASMIISGSRD 128
Query: 615 NEIQYWSINPFLCTHITKG---GTAQVRFQPRIG------QLLAAASDKVVSIFDIETDR 665
             I+ W+I    C     G     +QVR  P          +++A +DK+V  +++   +
Sbjct: 129 KTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Query: 666 QTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFH 724
                 GH   +N +    +G  +AS  ++  + +W++A+ + +  LS+    F S  F 
Sbjct: 188 IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVF-SLAFS 246
Query: 725 P 725
           P
Sbjct: 247 P 247

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 64/144 (44%), Gaps = 9/144 (6%)
Query: 648 LAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGE 706
           L+A+ DK + ++D+ T        GH   V  +  D     + S S++  +KVW++  G+
Sbjct: 81  LSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQ 139
Query: 707 CIQELSSNGNQFHSCVFHPSYS------TLLVVGGISSLELWNMAENK-SMTIAAHENII 759
           C+  L  + +        P+        T++  G    ++ WN+ + +       H + I
Sbjct: 140 CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNI 199
Query: 760 SALAQSPVTGMVASASHDSSVKLW 783
           + L  SP   ++ASA  D  + LW
Sbjct: 200 NTLTASPDGTLIASAGKDGEIMLW 223

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 61/241 (25%), Positives = 105/241 (43%), Gaps = 20/241 (8%)
Query: 501 GCIRSRNSKVTCCHFSS-DGKLLASSGHDRKVVLWNMD-TLQTESTP----EDHKSVVTD 554
           G +   N  VT    S+    LL S+  D+ ++ W +    Q    P    + H  +V D
Sbjct: 11  GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70
Query: 555 VRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDND 614
                + +   +AS DK++RLWD A      Q + GH S +MS+D   KK  +      D
Sbjct: 71  CTLTADGAYALSASWDKTLRLWDVATGE-TYQRFVGHKSDVMSVDID-KKASMIISGSRD 128
Query: 615 NEIQYWSINPFLCTHITKG---GTAQVRFQPRIGQ------LLAAASDKVVSIFDIETDR 665
             I+ W+I    C     G     +QVR  P          +++A +DK+V  +++   +
Sbjct: 129 KTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Query: 666 QTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFH 724
                 GH   +N +    +G  +AS  ++  + +W++A+ + +  LS+    F S  F 
Sbjct: 188 IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVF-SLAFS 246
Query: 725 P 725
           P
Sbjct: 247 P 247

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 61/241 (25%), Positives = 105/241 (43%), Gaps = 20/241 (8%)
Query: 501 GCIRSRNSKVTCCHFSS-DGKLLASSGHDRKVVLWNMD-TLQTESTP----EDHKSVVTD 554
           G +   N  VT    S+    LL S+  D+ ++ W +    Q    P    + H  +V D
Sbjct: 11  GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70
Query: 555 VRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDND 614
                + +   +AS DK++RLWD A      Q + GH S +MS+D   KK  +      D
Sbjct: 71  CTLTADGAYALSASWDKTLRLWDVATGE-TYQRFVGHKSDVMSVDID-KKASMIISGSRD 128
Query: 615 NEIQYWSINPFLCTHITKG---GTAQVRFQPRIGQ------LLAAASDKVVSIFDIETDR 665
             I+ W+I    C     G     +QVR  P          +++A +DK+V  +++   +
Sbjct: 129 KTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Query: 666 QTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFH 724
                 GH   +N +    +G  +AS  ++  + +W++A+ + +  LS+    F S  F 
Sbjct: 188 IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVF-SLAFS 246
Query: 725 P 725
           P
Sbjct: 247 P 247

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 61/241 (25%), Positives = 105/241 (43%), Gaps = 20/241 (8%)
Query: 501 GCIRSRNSKVTCCHFSS-DGKLLASSGHDRKVVLWNMD-TLQTESTP----EDHKSVVTD 554
           G +   N  VT    S+    LL S+  D+ ++ W +    Q    P    + H  +V D
Sbjct: 5   GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 64
Query: 555 VRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDND 614
                + +   +AS DK++RLWD A      Q + GH S +MS+D   KK  +      D
Sbjct: 65  CTLTADGAYALSASWDKTLRLWDVATGE-TYQRFVGHKSDVMSVDID-KKASMIISGSRD 122
Query: 615 NEIQYWSINPFLCTHITKG---GTAQVRFQPRIG------QLLAAASDKVVSIFDIETDR 665
             I+ W+I    C     G     +QVR  P          +++A +DK+V  +++   +
Sbjct: 123 KTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 181
Query: 666 QTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFH 724
                 GH   +N +    +G  +AS  ++  + +W++A+ + +  LS+    F S  F 
Sbjct: 182 IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVF-SLAFS 240
Query: 725 P 725
           P
Sbjct: 241 P 241

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 64/144 (44%), Gaps = 9/144 (6%)
Query: 648 LAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGE 706
           L+A+ DK + ++D+ T        GH   V  +  D     + S S++  +KVW++  G+
Sbjct: 75  LSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQ 133
Query: 707 CIQELSSNGNQFHSCVFHPSYS------TLLVVGGISSLELWNMAENK-SMTIAAHENII 759
           C+  L  + +        P+        T++  G    ++ WN+ + +       H + I
Sbjct: 134 CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNI 193
Query: 760 SALAQSPVTGMVASASHDSSVKLW 783
           + L  SP   ++ASA  D  + LW
Sbjct: 194 NTLTASPDGTLIASAGKDGEIMLW 217

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 61/241 (25%), Positives = 105/241 (43%), Gaps = 20/241 (8%)
Query: 501 GCIRSRNSKVTCCHFSS-DGKLLASSGHDRKVVLWNMD-TLQTESTP----EDHKSVVTD 554
           G +   N  VT    S+    LL S+  D+ ++ W +    Q    P    + H  +V D
Sbjct: 11  GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70
Query: 555 VRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDND 614
                + +   +AS DK++RLWD A      Q + GH S +MS+D   KK  +      D
Sbjct: 71  CTLTADGAYALSASWDKTLRLWDVATGE-TYQRFVGHKSDVMSVDID-KKASMIISGSRD 128
Query: 615 NEIQYWSINPFLCTHITKG---GTAQVRFQPRIG------QLLAAASDKVVSIFDIETDR 665
             I+ W+I    C     G     +QVR  P          +++A +DK+V  +++   +
Sbjct: 129 KTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Query: 666 QTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFH 724
                 GH   +N +    +G  +AS  ++  + +W++A+ + +  LS+    F S  F 
Sbjct: 188 IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVF-SLAFS 246
Query: 725 P 725
           P
Sbjct: 247 P 247

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/238 (21%), Positives = 101/238 (42%), Gaps = 7/238 (2%)
Query: 496 TFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDV 555
           T  EV  I+   + V    F +    +     D ++ ++N +T +     E H   +  +
Sbjct: 44  TQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSI 103
Query: 556 RFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDN 615
              P    + + S D +V+LW+  N     Q + GH   +M + F+PK    F     D 
Sbjct: 104 AVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR 163
Query: 616 EIQYWSINP----FLCTHITKGGTAQVRFQPRIGQ--LLAAASDKVVSIFDIETDRQTHS 669
            ++ WS+      F  T   + G   V + P   +  ++ A+ D  + I+D +T     +
Sbjct: 164 TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVAT 223
Query: 670 LQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPS 726
           L+GH   V++  +      + S S++  +K+W+ ++ +  + L+    +      HP+
Sbjct: 224 LEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPT 281

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/236 (20%), Positives = 100/236 (42%), Gaps = 7/236 (2%)
Query: 498 CEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRF 557
            EV  I+   + V    F +    +     D ++ ++N +T +     E H   +  +  
Sbjct: 46  VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAV 105
Query: 558 RPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEI 617
            P    + + S D +V+LW+  N     Q + GH   +M + F+PK    F     D  +
Sbjct: 106 HPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV 165
Query: 618 QYWSINP----FLCTHITKGGTAQVRFQPRIGQ--LLAAASDKVVSIFDIETDRQTHSLQ 671
           + WS+      F  T   + G   V + P   +  ++ A+ D  + I+D +T     +L+
Sbjct: 166 KVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE 225
Query: 672 GHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPS 726
           GH   V++  +      + S S++  +K+W+ ++ +  + L+    +      HP+
Sbjct: 226 GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPT 281

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 94/213 (44%), Gaps = 5/213 (2%)
Query: 503 IRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSS 562
           +R  +  V+    SSDG+   S   D  + LW++ T  T      H   V  V F  ++ 
Sbjct: 82  LRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNR 141
Query: 563 QLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTD-LFCFCDNDNEIQYWS 621
           Q+ + S DK+++LW+       +     HS  +  + F P  ++ +   C  D  ++ W+
Sbjct: 142 QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN 201
Query: 622 I-NPFLCT-HITKGGTAQVRFQPRIGQLLAA-ASDKVVSIFDIETDRQTHSLQGHAELVN 678
           + N  L T HI   G          G L A+   D    ++D+   +  ++L G  +++N
Sbjct: 202 LANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GDIIN 260
Query: 679 YICWDTNGDYLASVSQNLVKVWSMASGECIQEL 711
            +C+  N  +L + +   +K+W +     + EL
Sbjct: 261 ALCFSPNRYWLCAATGPSIKIWDLEGKIIVDEL 293

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 94/213 (44%), Gaps = 5/213 (2%)
Query: 503 IRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSS 562
           +R  +  V+    SSDG+   S   D  + LW++ T  T      H   V  V F  ++ 
Sbjct: 59  LRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNR 118
Query: 563 QLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTD-LFCFCDNDNEIQYWS 621
           Q+ + S DK+++LW+       +     HS  +  + F P  ++ +   C  D  ++ W+
Sbjct: 119 QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN 178
Query: 622 I-NPFLCT-HITKGGTAQVRFQPRIGQLLAA-ASDKVVSIFDIETDRQTHSLQGHAELVN 678
           + N  L T HI   G          G L A+   D    ++D+   +  ++L G  +++N
Sbjct: 179 LANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GDIIN 237
Query: 679 YICWDTNGDYLASVSQNLVKVWSMASGECIQEL 711
            +C+  N  +L + +   +K+W +     + EL
Sbjct: 238 ALCFSPNRYWLCAATGPSIKIWDLEGKIIVDEL 270

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/236 (20%), Positives = 100/236 (42%), Gaps = 7/236 (2%)
Query: 498 CEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRF 557
            EV  I+   + V    F +    +     D ++ ++N +T +     E H   +  +  
Sbjct: 46  VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAV 105
Query: 558 RPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEI 617
            P    + + S D +V+LW+  N     Q + GH   +M + F+PK    F     D  +
Sbjct: 106 HPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV 165
Query: 618 QYWSINP----FLCTHITKGGTAQVRFQPRIGQ--LLAAASDKVVSIFDIETDRQTHSLQ 671
           + WS+      F  T   + G   V + P   +  ++ A+ D  + I+D +T     +L+
Sbjct: 166 KVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE 225
Query: 672 GHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPS 726
           GH   V++  +      + S S++  +K+W+ ++ +  + L+    +      HP+
Sbjct: 226 GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPT 281

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/236 (20%), Positives = 100/236 (42%), Gaps = 7/236 (2%)
Query: 498 CEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRF 557
            EV  I+   + V    F +    +     D ++ ++N +T +     E H   +  +  
Sbjct: 46  VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAV 105
Query: 558 RPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEI 617
            P    + + S D +V+LW+  N     Q + GH   +M + F+PK    F     D  +
Sbjct: 106 HPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV 165
Query: 618 QYWSINP----FLCTHITKGGTAQVRFQPRIGQ--LLAAASDKVVSIFDIETDRQTHSLQ 671
           + WS+      F  T   + G   V + P   +  ++ A+ D  + I+D +T     +L+
Sbjct: 166 KVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE 225
Query: 672 GHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPS 726
           GH   V++  +      + S S++  +K+W+ ++ +  + L+    +      HP+
Sbjct: 226 GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPT 281

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/207 (21%), Positives = 90/207 (43%), Gaps = 47/207 (22%)
Query: 510 VTCCHFSSDGKLLASSGHDRKVVLWNMD---TLQTESTPEDHKSVVTDVRFRPNSSQ--L 564
           V    FS D + + S+  DR + LWN             E H+  V+ VRF PN+ Q  +
Sbjct: 475 VLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTI 534
Query: 565 ATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINP 624
            +AS DK+V++W+ +N    S    GH+  + ++   P  +                   
Sbjct: 535 VSASWDKTVKVWNLSNCKLRS-TLAGHTGYVSTVAVSPDGS------------------- 574
Query: 625 FLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDT 684
            LC                     +   D VV ++D+   ++ +SL+ ++ +++ +C+  
Sbjct: 575 -LCA--------------------SGGKDGVVLLWDLAEGKKLYSLEANS-VIHALCFSP 612
Query: 685 NGDYLASVSQNLVKVWSMASGECIQEL 711
           N  +L + +++ +K+W + S   +++L
Sbjct: 613 NRYWLCAATEHGIKIWDLESKSIVEDL 639

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/297 (19%), Positives = 108/297 (36%), Gaps = 58/297 (19%)
Query: 501 GCIRSRNSKVTCCHFSSD-GKLLASSGHDRKVVLWNMDTLQ-----TESTPEDHKSVVTD 554
           G +R+    VT      D   ++ S+  D+ ++LW +          +     H   V D
Sbjct: 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVED 435
Query: 555 VRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDND 614
           V    +     + S D  +RLWD A     ++ + GH+  ++S+ F      +      D
Sbjct: 436 VVLSSDGQFALSGSWDGELRLWDLA-AGVSTRRFVGHTKDVLSVAFSLDNRQIVS-ASRD 493
Query: 615 NEIQYWSINPFLCTHITKGGTAQ------VRFQPRIGQ--LLAAASDKVVSIFDIETDRQ 666
             I+ W+        I++GG         VRF P   Q  +++A+ DK V          
Sbjct: 494 RTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTV---------- 543
Query: 667 THSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPS 726
                                          KVW++++ +    L+ +     +    P 
Sbjct: 544 -------------------------------KVWNLSNCKLRSTLAGHTGYVSTVAVSPD 572
Query: 727 YSTLLVVGGISSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKLW 783
            S     G    + LW++AE K +      ++I AL  SP    + +A+ +  +K+W
Sbjct: 573 GSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAAT-EHGIKIW 628

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 102/241 (42%), Gaps = 20/241 (8%)
Query: 501 GCIRSRNSKVTCCHFSS-DGKLLASSGHDRKVVLWNMD-TLQTESTP----EDHKSVVTD 554
           G +   N  VT    S+    LL S+  D+ ++ W +    Q    P    + H  +V D
Sbjct: 11  GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70
Query: 555 VRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDND 614
                + +   +AS DK++RLWD A      Q + GH S + S+D   K + +      D
Sbjct: 71  CTLTADGAYALSASWDKTLRLWDVATGE-TYQRFVGHKSDVXSVDIDKKASXIIS-GSRD 128
Query: 615 NEIQYWSINPFLCTHITKG---GTAQVRFQPRIGQ------LLAAASDKVVSIFDIETDR 665
             I+ W+I    C     G     +QVR  P          +++A +DK V  +++   +
Sbjct: 129 KTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQ 187
Query: 666 QTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFH 724
                 GH   +N +    +G  +AS  ++  + +W++A+ +    LS+    F S  F 
Sbjct: 188 IEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEVF-SLAFS 246
Query: 725 P 725
           P
Sbjct: 247 P 247

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 64/144 (44%), Gaps = 9/144 (6%)
Query: 648 LAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGE 706
           L+A+ DK + ++D+ T        GH   V  +  D     + S S++  +KVW++  G+
Sbjct: 81  LSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTI-KGQ 139
Query: 707 CIQELSSNGNQFHSCVFHPSYS------TLLVVGGISSLELWNMAENK-SMTIAAHENII 759
           C+  L  + +        P+        T++  G    ++ WN+ + +       H + I
Sbjct: 140 CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNI 199
Query: 760 SALAQSPVTGMVASASHDSSVKLW 783
           + L  SP   ++ASA  D  + LW
Sbjct: 200 NTLTASPDGTLIASAGKDGEIXLW 223

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 76/161 (47%), Gaps = 5/161 (3%)
Query: 503 IRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSS 562
           + +R   +    +S DGK LAS   D  + ++++ T +   T E H   +  + F P+S 
Sbjct: 160 LDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQ 219
Query: 563 QLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSI 622
            L TAS D  ++++D  + N      +GH+S ++++ F P  T  F    +D  ++ W +
Sbjct: 220 LLVTASDDGYIKIYDVQHANLAG-TLSGHASWVLNVAFCPDDTH-FVSSSSDKSVKVWDV 277
Query: 623 NPFLCTHITKGGTAQ---VRFQPRIGQLLAAASDKVVSIFD 660
               C H       Q   V++     ++++   D+ + I+D
Sbjct: 278 GTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/233 (21%), Positives = 95/233 (40%), Gaps = 48/233 (20%)
Query: 515 FSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVR 574
           FS D + LA+  H  KV ++ +++ + E + +     +  + + P+   LA+ ++D  + 
Sbjct: 130 FSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIIN 189
Query: 575 LWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGG 634
           ++D A          GH+ PI SL F P                                
Sbjct: 190 IFDIATGKLL-HTLEGHAMPIRSLTFSPDS------------------------------ 218
Query: 635 TAQVRFQPRIGQLLAAASDK-VVSIFDIETDRQTHSLQGHAELVNYICW---DTNGDYLA 690
                      QLL  ASD   + I+D++      +L GHA  V  + +   DT+  +++
Sbjct: 219 -----------QLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTH--FVS 265
Query: 691 SVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWN 743
           S S   VKVW + +  C+     + +Q     ++ + S ++ VG    + +++
Sbjct: 266 SSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/215 (20%), Positives = 91/215 (42%), Gaps = 7/215 (3%)
Query: 558 RPNSSQLATASVDKSVRLWDAANPNFCSQ-AYTGHSSPIMSLDFHPKKTDLFCFCDNDNE 616
           + NS  + T S+D  V++W   +     Q +  GH   ++S+D       +      D  
Sbjct: 45  KENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDI-SHTLPIAASSSLDAH 103
Query: 617 IQYWSI-NPFLCTHITKG--GTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGH 673
           I+ W + N      I  G      + F P    L        V+IF +E+ ++ +SL   
Sbjct: 104 IRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTR 163
Query: 674 AELVNYICWDTNGDYLAS-VSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLV 732
            + +  I +  +G YLAS     ++ ++ +A+G+ +  L  +     S  F P    L+ 
Sbjct: 164 GKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVT 223
Query: 733 VGGISSLELWNMAE-NKSMTIAAHENIISALAQSP 766
                 ++++++   N + T++ H + +  +A  P
Sbjct: 224 ASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCP 258

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 8/140 (5%)
Query: 488 QKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTE----S 543
           ++   + F    +  I    ++V    +S+DG  LA+   D+ V +W  D    E    S
Sbjct: 88  EESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECIS 147
Query: 544 TPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNF-CSQAYTGHSSPIMSLDFHP 602
             ++H   V  V + P+ + LA++S D +VR+W   + ++ C     GH   + S DF  
Sbjct: 148 VLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDF-D 206
Query: 603 KKTDLFCFC--DNDNEIQYW 620
           K   +F  C   +D+ ++ W
Sbjct: 207 KTEGVFRLCSGSDDSTVRVW 226

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 73/170 (42%), Gaps = 17/170 (10%)
Query: 632 KGGTAQVRFQPRIGQLLAAASDKVVSIFDIE--TDRQTHS-----LQGHAELVNYICWDT 684
           K     V ++P    L A + D  VSI+  E   DR         ++GH   V  + W  
Sbjct: 58  KKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSN 117
Query: 685 NGDYLASVSQNL-VKVW----SMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSL 739
           +G YLA+ S++  V +W    S    ECI  L  +       ++HPS + L       ++
Sbjct: 118 DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTV 177
Query: 740 ELWNMAENKSMTIAA---HENIISALAQSPVTGM--VASASHDSSVKLWK 784
            +W   ++    +A    HE  + +       G+  + S S DS+V++WK
Sbjct: 178 RIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWK 227

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/230 (23%), Positives = 107/230 (46%), Gaps = 47/230 (20%)
Query: 518 DGKLLASSGHDRKVVLWNMDTLQTEST-------------PEDHKSVVTDVRFRPNSSQL 564
           +G+ + S G D  +VL++++    +S              P+ H+  V  V++ P+ + +
Sbjct: 55  EGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM 114
Query: 565 AT-ASVDKSVRLWD------AANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEI 617
            T +S DK++++WD      A   NF    Y+ H SP+ +      K  L        ++
Sbjct: 115 FTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVST------KHCLVAVGTRGPKV 168
Query: 618 QYWSINPFLCTHITKGGTAQ---VRFQPRIGQLLAAAS-DKVVSIFDIE----------- 662
           Q   +    C+HI +G   +   V + PR   +LA AS D  V ++D+            
Sbjct: 169 QLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQ 228
Query: 663 -TDRQTHSLQ----GHAELVNYICWDTNGDYLASV-SQNLVKVWSMASGE 706
              +++ +++     H   VN +C+ ++G +L +V + N +++W+ ++GE
Sbjct: 229 HNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGE 278

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/264 (20%), Positives = 112/264 (42%), Gaps = 39/264 (14%)
Query: 550 SVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFC 609
           SV+T ++F  N   + T + DK +R++D+ N  F  Q  +GH   + +L +      +  
Sbjct: 123 SVITCLQFEDN--YVITGADDKMIRVYDSINKKFLLQL-SGHDGGVWALKY--AHGGILV 177
Query: 610 FCDNDNEIQYWSINPFLCTHITKGGTAQVRF-----QPRIGQLLAAASDKVVSIFDI--E 662
               D  ++ W I    CTH+ +G  + VR         I  ++  + D  + ++ +  E
Sbjct: 178 SGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKE 237
Query: 663 TDRQTHS---------------------LQGHAELVNYICWDTNGDYLASVS-QNLVKVW 700
           +    H                      L+GH   V  +    +G+ + S S  N + VW
Sbjct: 238 SSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS--GHGNIVVSGSYDNTLIVW 295
Query: 701 SMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM-TIAAHENII 759
            +A  +C+  LS + ++ +S ++       +     +++ +W++   + M T+  H  ++
Sbjct: 296 DVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALV 355
Query: 760 SALAQSPVTGMVASASHDSSVKLW 783
             L  S     + SA+ D S++ W
Sbjct: 356 GLLRLSD--KFLVSAAADGSIRGW 377

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 53/292 (18%), Positives = 114/292 (39%), Gaps = 51/292 (17%)
Query: 503 IRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSS 562
           ++   +KV C  +  D + + SS  D KV++W+  T   E       + V    + P+  
Sbjct: 60  LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGC 119
Query: 563 QLATASVDKSVRLWDAA---NPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQY 619
            +A   +D    ++      N N  ++          S+  H        F ++D     
Sbjct: 120 AIACGGLDNKCSVYPLTFDKNENMAAKK--------KSVAMHTNYLSACSFTNSDM---- 167
Query: 620 WSINPFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNY 679
                                     Q+L A+ D   +++D+E+ +   S  GH    + 
Sbjct: 168 --------------------------QILTASGDGTCALWDVESGQLLQSFHGHG--ADV 199
Query: 680 ICWD-----TNGDYLASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVG 734
           +C D     T   +++        VW M SG+C+Q   ++ +  +S  ++PS        
Sbjct: 200 LCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGS 259
Query: 735 GISSLELWNMAENKSMTIAAHENII---SALAQSPVTGMVASASHDSSVKLW 783
             ++  L+++  ++ + I + E+II   S++  S    ++ +  +D ++ +W
Sbjct: 260 DDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVW 311

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 62/294 (21%), Positives = 118/294 (40%), Gaps = 18/294 (6%)
Query: 503 IRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSS 562
           +R   +K+   H+ +D +LL S+  D K+++W+  T           S V    + P+ +
Sbjct: 62  LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 121
Query: 563 QLATASVDKSVRLWD----AANPNFCSQ--AYTGHSSPIMSLDFHPKKTDLFCFCDNDNE 616
            +A   +D    +++      N     +   +TG+ S    LD +   T        D  
Sbjct: 122 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-----SGDTT 176
Query: 617 IQYWSINPFLCTHITKGGTAQV---RFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGH 673
              W I     T    G T  V      P     ++ A D    ++D+       +  GH
Sbjct: 177 CALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH 236
Query: 674 AELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNG--NQFHSCVFHPSYSTL 730
              +N IC+  NG+  A+ S +   +++ + + + +   S +       S  F  S   L
Sbjct: 237 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 296
Query: 731 LVVGGISSLELWN-MAENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKLW 783
           L      +  +W+ +  +++  +A H+N +S L  +     VA+ S DS +K+W
Sbjct: 297 LAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 350

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 52.8 bits (125), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 62/294 (21%), Positives = 118/294 (40%), Gaps = 18/294 (6%)
Query: 503 IRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSS 562
           +R   +K+   H+ +D +LL S+  D K+++W+  T           S V    + P+ +
Sbjct: 51  LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 110
Query: 563 QLATASVDKSVRLWD----AANPNFCSQ--AYTGHSSPIMSLDFHPKKTDLFCFCDNDNE 616
            +A   +D    +++      N     +   +TG+ S    LD +   T        D  
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-----SGDTT 165
Query: 617 IQYWSINPFLCTHITKGGTAQV---RFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGH 673
              W I     T    G T  V      P     ++ A D    ++D+       +  GH
Sbjct: 166 CALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH 225
Query: 674 AELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNG--NQFHSCVFHPSYSTL 730
              +N IC+  NG+  A+ S +   +++ + + + +   S +       S  F  S   L
Sbjct: 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285
Query: 731 LVVGGISSLELWN-MAENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKLW 783
           L      +  +W+ +  +++  +A H+N +S L  +     VA+ S DS +K+W
Sbjct: 286 LAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 52.8 bits (125), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 62/294 (21%), Positives = 118/294 (40%), Gaps = 18/294 (6%)
Query: 503 IRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSS 562
           +R   +K+   H+ +D +LL S+  D K+++W+  T           S V    + P+ +
Sbjct: 51  LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 110
Query: 563 QLATASVDKSVRLWD----AANPNFCSQ--AYTGHSSPIMSLDFHPKKTDLFCFCDNDNE 616
            +A   +D    +++      N     +   +TG+ S    LD +   T        D  
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-----SGDTT 165
Query: 617 IQYWSINPFLCTHITKGGTAQV---RFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGH 673
              W I     T    G T  V      P     ++ A D    ++D+       +  GH
Sbjct: 166 CALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH 225
Query: 674 AELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNG--NQFHSCVFHPSYSTL 730
              +N IC+  NG+  A+ S +   +++ + + + +   S +       S  F  S   L
Sbjct: 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285
Query: 731 LVVGGISSLELWN-MAENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKLW 783
           L      +  +W+ +  +++  +A H+N +S L  +     VA+ S DS +K+W
Sbjct: 286 LAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 62/294 (21%), Positives = 118/294 (40%), Gaps = 18/294 (6%)
Query: 503 IRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSS 562
           +R   +K+   H+ +D +LL S+  D K+++W+  T           S V    + P+ +
Sbjct: 51  LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 110
Query: 563 QLATASVDKSVRLWD----AANPNFCSQ--AYTGHSSPIMSLDFHPKKTDLFCFCDNDNE 616
            +A   +D    +++      N     +   +TG+ S    LD +   T        D  
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-----SGDTT 165
Query: 617 IQYWSINPFLCTHITKGGTAQV---RFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGH 673
              W I     T    G T  V      P     ++ A D    ++D+       +  GH
Sbjct: 166 CALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH 225
Query: 674 AELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNG--NQFHSCVFHPSYSTL 730
              +N IC+  NG+  A+ S +   +++ + + + +   S +       S  F  S   L
Sbjct: 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285
Query: 731 LVVGGISSLELWN-MAENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKLW 783
           L      +  +W+ +  +++  +A H+N +S L  +     VA+ S DS +K+W
Sbjct: 286 LAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 62/294 (21%), Positives = 118/294 (40%), Gaps = 18/294 (6%)
Query: 503 IRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSS 562
           +R   +K+   H+ +D +LL S+  D K+++W+  T           S V    + P+ +
Sbjct: 51  LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 110
Query: 563 QLATASVDKSVRLWD----AANPNFCSQ--AYTGHSSPIMSLDFHPKKTDLFCFCDNDNE 616
            +A   +D    +++      N     +   +TG+ S    LD +   T        D  
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-----SGDTT 165
Query: 617 IQYWSINPFLCTHITKGGTAQV---RFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGH 673
              W I     T    G T  V      P     ++ A D    ++D+       +  GH
Sbjct: 166 CALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH 225
Query: 674 AELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNG--NQFHSCVFHPSYSTL 730
              +N IC+  NG+  A+ S +   +++ + + + +   S +       S  F  S   L
Sbjct: 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285
Query: 731 LVVGGISSLELWN-MAENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKLW 783
           L      +  +W+ +  +++  +A H+N +S L  +     VA+ S DS +K+W
Sbjct: 286 LAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 49.7 bits (117), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 67/294 (22%), Positives = 125/294 (42%), Gaps = 41/294 (13%)
Query: 517 SDGKLLASSGHDRKVVLWN------MDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVD 570
           S G +LA +  D  V LW+      +  LQ E   E     ++ V +    + LA  +  
Sbjct: 125 SSGNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGE----YISSVAWIKEGNYLAVGTSS 179
Query: 571 KSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHI 630
             V+LWD        +  T HS+ + SL ++   + +         I +  +        
Sbjct: 180 AEVQLWDVQQQKRL-RNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVA 235
Query: 631 TKGGTAQ----VRFQPRIGQLLAAASDKVVSIFD----------IETDRQTHSLQGHAEL 676
           T  G +Q    +R+ P    L +  +D +V+++           ++T  Q    QG  + 
Sbjct: 236 TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQH---QGAVKA 292
Query: 677 VNYICWDTNGDYLAS---VSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVV 733
           V +  W +N   LA+    S   +++W++ SG C+  + ++ +Q  S ++ P Y  L+  
Sbjct: 293 VAWCPWQSN--VLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISG 349
Query: 734 GGISS--LELWNMAE-NKSMTIAAHENIISALAQSPVTGMVASASHDSSVKLWK 784
            G +   L +W      K   +  H + + +L  SP    VASA+ D +++LW+
Sbjct: 350 HGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 403

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 67/294 (22%), Positives = 125/294 (42%), Gaps = 41/294 (13%)
Query: 517 SDGKLLASSGHDRKVVLWN------MDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVD 570
           S G +LA +  D  V LW+      +  LQ E   E     ++ V +    + LA  +  
Sbjct: 114 SSGNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGE----YISSVAWIKEGNYLAVGTSS 168
Query: 571 KSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHI 630
             V+LWD        +  T HS+ + SL ++   + +         I +  +        
Sbjct: 169 AEVQLWDVQQQKRL-RNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVA 224
Query: 631 TKGGTAQ----VRFQPRIGQLLAAASDKVVSIFD----------IETDRQTHSLQGHAEL 676
           T  G +Q    +R+ P    L +  +D +V+++           ++T  Q    QG  + 
Sbjct: 225 TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQH---QGAVKA 281
Query: 677 VNYICWDTNGDYLAS---VSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVV 733
           V +  W +N   LA+    S   +++W++ SG C+  + ++ +Q  S ++ P Y  L+  
Sbjct: 282 VAWCPWQSN--VLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISG 338
Query: 734 GGISS--LELWNMAE-NKSMTIAAHENIISALAQSPVTGMVASASHDSSVKLWK 784
            G +   L +W      K   +  H + + +L  SP    VASA+ D +++LW+
Sbjct: 339 HGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 392

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 76/191 (39%), Gaps = 35/191 (18%)
Query: 521 LLASSGHDRKVVLW---NMDTLQTESTPEDHKSVVTDVRFRPNSS-QLATASVDKSVRLW 576
           L  S   D+K+++W   N +T +   T + H + V  + F P S   LAT S DK+V LW
Sbjct: 250 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 309
Query: 577 DAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTA 636
           D  N      ++  H   I  + + P    +      D  +  W ++             
Sbjct: 310 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS------------- 356
Query: 637 QVRFQPRIG--QLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDY-LASVS 693
                 +IG  Q    A D    +  I          GH   ++   W+ N  + + SVS
Sbjct: 357 ------KIGEEQSTEDAEDGPPELLFIHG--------GHTAKISDFSWNPNEPWIICSVS 402
Query: 694 Q-NLVKVWSMA 703
           + N+++VW MA
Sbjct: 403 EDNIMQVWQMA 413

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/136 (23%), Positives = 63/136 (46%), Gaps = 16/136 (11%)
Query: 503 IRSRNSKVTCCHFSSDGK-LLASSGHDRKVVLWNMDTLQTE-STPEDHKSVVTDVRFRP- 559
           + +  ++V C  F+   + +LA+   D+ V LW++  L+ +  T E HK  +  V + P 
Sbjct: 271 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPH 330
Query: 560 NSSQLATASVDKSVRLWDAAN-------------PNFCSQAYTGHSSPIMSLDFHPKKTD 606
           N + LA++  D+ + +WD +              P      + GH++ I    ++P +  
Sbjct: 331 NETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 390
Query: 607 LFCFCDNDNEIQYWSI 622
           + C    DN +Q W +
Sbjct: 391 VICSVSEDNIMQIWQM 406

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 77/192 (40%), Gaps = 37/192 (19%)
Query: 521 LLASSGHDRKVVLWNMDTLQTESTP----EDHKSVVTDVRFRPNSS-QLATASVDKSVRL 575
           L  S   D+K+++W+  +  T S P    + H + V  + F P S   LAT S DK+V L
Sbjct: 244 LFGSVADDQKLMIWDTRS-NTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 302
Query: 576 WDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGT 635
           WD  N       +  H   I  + + P    +      D  +  W ++            
Sbjct: 303 WDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS------------ 350
Query: 636 AQVRFQPRIGQLLAA--ASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDY-LASV 692
                  +IG+  +A  A D    +  I          GH   ++   W+ N  + + SV
Sbjct: 351 -------KIGEEQSAEDAEDGPPELLFIHG--------GHTAKISDFSWNPNEPWVICSV 395
Query: 693 SQ-NLVKVWSMA 703
           S+ N++++W MA
Sbjct: 396 SEDNIMQIWQMA 407

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 76/191 (39%), Gaps = 35/191 (18%)
Query: 521 LLASSGHDRKVVLW---NMDTLQTESTPEDHKSVVTDVRFRPNSS-QLATASVDKSVRLW 576
           L  S   D+K+++W   N +T +   T + H + V  + F P S   LAT S DK+V LW
Sbjct: 248 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 307
Query: 577 DAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTA 636
           D  N      ++  H   I  + + P    +      D  +  W ++             
Sbjct: 308 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS------------- 354
Query: 637 QVRFQPRIG--QLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDY-LASVS 693
                 +IG  Q    A D    +  I          GH   ++   W+ N  + + SVS
Sbjct: 355 ------KIGEEQSTEDAEDGPPELLFIHG--------GHTAKISDFSWNPNEPWIICSVS 400
Query: 694 Q-NLVKVWSMA 703
           + N+++VW MA
Sbjct: 401 EDNIMQVWQMA 411

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 76/191 (39%), Gaps = 35/191 (18%)
Query: 521 LLASSGHDRKVVLW---NMDTLQTESTPEDHKSVVTDVRFRPNSS-QLATASVDKSVRLW 576
           L  S   D+K+++W   N +T +   T + H + V  + F P S   LAT S DK+V LW
Sbjct: 246 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 305
Query: 577 DAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTA 636
           D  N      ++  H   I  + + P    +      D  +  W ++             
Sbjct: 306 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS------------- 352
Query: 637 QVRFQPRIG--QLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDY-LASVS 693
                 +IG  Q    A D    +  I          GH   ++   W+ N  + + SVS
Sbjct: 353 ------KIGEEQSTEDAEDGPPELLFIHG--------GHTAKISDFSWNPNEPWIICSVS 398
Query: 694 Q-NLVKVWSMA 703
           + N+++VW MA
Sbjct: 399 EDNIMQVWQMA 409

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 67/294 (22%), Positives = 124/294 (42%), Gaps = 41/294 (13%)
Query: 517 SDGKLLASSGHDRKVVLWN------MDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVD 570
           S G +LA +  D  V LW+      +  LQ E   E     ++ V +    + LA  +  
Sbjct: 34  SSGNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGE----YISSVAWIKEGNYLAVGTSS 88
Query: 571 KSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHI 630
             V+LWD        +  T HS+ + SL +    + +         I +  +        
Sbjct: 89  AEVQLWDVQQQKRL-RNMTSHSARVGSLSW---NSYILSSGSRSGHIHHHDVRVAEHHVA 144
Query: 631 TKGGTAQ----VRFQPRIGQLLAAASDKVVSIFD----------IETDRQTHSLQGHAEL 676
           T  G +Q    +R+ P    L +  +D +V+++           ++T  Q    QG  + 
Sbjct: 145 TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQH---QGAVKA 201
Query: 677 VNYICWDTNGDYLAS---VSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVV 733
           V +  W +N   LA+    S   +++W++ SG C+  + ++ +Q  S ++ P Y  L+  
Sbjct: 202 VAWCPWQSN--VLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISG 258
Query: 734 GGISS--LELWNMAE-NKSMTIAAHENIISALAQSPVTGMVASASHDSSVKLWK 784
            G +   L +W      K   +  H + + +L  SP    VASA+ D +++LW+
Sbjct: 259 HGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 312

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/136 (22%), Positives = 64/136 (47%), Gaps = 16/136 (11%)
Query: 503 IRSRNSKVTCCHFSSDGK-LLASSGHDRKVVLWNMDTLQTE-STPEDHKSVVTDVRFRP- 559
           + +  ++V C  F+   + +LA+   D+ V LW++  L+ +  + E HK  +  V++ P 
Sbjct: 269 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 328
Query: 560 NSSQLATASVDKSVRLWDAAN-------------PNFCSQAYTGHSSPIMSLDFHPKKTD 606
           N + LA++  D+ + +WD +              P      + GH++ I    ++P +  
Sbjct: 329 NETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 388
Query: 607 LFCFCDNDNEIQYWSI 622
           + C    DN +Q W +
Sbjct: 389 VICSVSEDNIMQVWQM 404

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 76/189 (40%), Gaps = 31/189 (16%)
Query: 521 LLASSGHDRKVVLWNM---DTLQTESTPEDHKSVVTDVRFRPNSS-QLATASVDKSVRLW 576
           L  S   D+K+++W+    +T +   + + H + V  + F P S   LAT S DK+V LW
Sbjct: 242 LFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 301
Query: 577 DAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTA 636
           D  N      ++  H   I  + + P    +      D  +  W         ++K G  
Sbjct: 302 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWD--------LSKIGEE 353
Query: 637 QVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDY-LASVSQ- 694
           Q    P        A D    +  I          GH   ++   W+ N  + + SVS+ 
Sbjct: 354 Q---SPE------DAEDGPPELLFIHG--------GHTAKISDFSWNPNEPWVICSVSED 396
Query: 695 NLVKVWSMA 703
           N+++VW MA
Sbjct: 397 NIMQVWQMA 405

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/187 (21%), Positives = 71/187 (37%), Gaps = 32/187 (17%)
Query: 519 GKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVV--TDVRFRPNSSQLATASVDKSVRLW 576
           G +L S   DR V +W++         E H S V   D+    N   + T S D ++ +W
Sbjct: 173 GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 232
Query: 577 D-----------------------AANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDN 613
                                     NP F      GH + + ++  H    ++      
Sbjct: 233 KLPKESSVPDHGEEHDYPLVFHTPEENPYFVG-VLRGHXASVRTVSGHG---NIVVSGSY 288
Query: 614 DNEIQYWSINPFLCTHITKGGTAQVR---FQPRIGQLLAAASDKVVSIFDIETDRQTHSL 670
           DN +  W +    C +I  G T ++    +     + ++A+ D  + I+D+E     ++L
Sbjct: 289 DNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTL 348
Query: 671 QGHAELV 677
           QGH  LV
Sbjct: 349 QGHTALV 355

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 61/134 (45%), Gaps = 16/134 (11%)
Query: 503 IRSRNSKVTCCHFSSDGK-LLASSGHDRKVVLWNMDTLQTE-STPEDHKSVVTDVRFRP- 559
           + +  ++V C  F+   + +LA+   D+ V LW++  L+ +  T E HK  +  V + P 
Sbjct: 271 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPH 330
Query: 560 NSSQLATASVDKSVRLWDAAN-------------PNFCSQAYTGHSSPIMSLDFHPKKTD 606
           N + LA++  D+ + +WD +              P      + GH++ I    ++P +  
Sbjct: 331 NETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 390
Query: 607 LFCFCDNDNEIQYW 620
           + C    DN  Q W
Sbjct: 391 VICSVSEDNIXQIW 404

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 72/159 (45%), Gaps = 16/159 (10%)
Query: 561 SSQLATASVDKSVRLWDA-ANPNF-----CSQAYTGHSSPIMSLDFHPKKTDLFCFCDND 614
           S  L +AS D +V LWD  A P           +TGHS+ +  + +H     LF    +D
Sbjct: 192 SGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADD 251
Query: 615 NEIQYWSINPFLC---THITKGGTAQVR---FQPRIGQLLAAAS-DKVVSIFDIETDR-Q 666
            ++  W          +H+    TA+V    F P    +LA  S DK V+++D+   + +
Sbjct: 252 QKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK 311
Query: 667 THSLQGHAELVNYICWDTNGDYL--ASVSQNLVKVWSMA 703
            H+ + H + +  + W  + + +  +S +   + VW ++
Sbjct: 312 LHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS 350

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 70/331 (21%), Positives = 128/331 (38%), Gaps = 38/331 (11%)
Query: 488 QKQPTKGFTFCEVGCIRS---RNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTEST 544
           Q +    F   ++ C R+    + KV    ++ +   + S+  D ++++WN  T Q    
Sbjct: 44  QGRTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHA 103
Query: 545 PEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAA-----NPNF-CSQAYTGHSSPIMSL 598
            + H   V +  F PN   +A   +D +  +++ +     + N   S+  TGH     S 
Sbjct: 104 IKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSC 163
Query: 599 DFHPKKTDLFCFCDNDNEIQYWSIN-----PFLCTHITKGGTAQVRFQPRIGQL-----L 648
            + P +         D     W +          +    G TA V     I  L     +
Sbjct: 164 QYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADV-LSLSINSLNANMFI 222
Query: 649 AAASDKVVSIFDIE-TDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGE 706
           + + D  V ++D+  T R   +  GH   +N + +  +G    + S +   +++ M +G 
Sbjct: 223 SGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGH 282
Query: 707 CIQ----ELSSNGNQF---HSCVFHPSYSTLLVVGGISS--LELWN-----MAENKSMTI 752
            +Q    E   N N+     S  F  S S  L+  G S+    +W+     M  N     
Sbjct: 283 QLQVYNREPDRNDNELPIVTSVAF--SISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQ 340
Query: 753 AAHENIISALAQSPVTGMVASASHDSSVKLW 783
            +HE  IS L  S     + + S D ++K+W
Sbjct: 341 NSHEGRISCLGLSSDGSALCTGSWDKNLKIW 371

>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex Length = 344

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 67/160 (41%), Gaps = 12/160 (7%)
Query: 466 LLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLAS- 524
           LL      GR   G+L    +    P +GF  C  G +++             G L+AS 
Sbjct: 45  LLGASSLSGRCWAGSLWLFKDPCAAPNEGF--CSAG-VQTEAGVADLTWVGERGILVASD 101
Query: 525 SGHDRKVVLWNMDTLQT----ESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAAN 580
           SG    V LW +D  +T    +    +H  +V+ V    + +Q  + S D  +++WD A 
Sbjct: 102 SG---AVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ 158
Query: 581 PNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYW 620
               S +Y  H++ +  +   P K  +F  C  DN I  W
Sbjct: 159 QVVLS-SYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLW 197

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 7/77 (9%)
Query: 510 VTCCHFSSDGKLLASSGHDRKVVLWN-MDTLQTESTPED------HKSVVTDVRFRPNSS 562
           V    ++ DG L AS+G D  +VL+N +D  +T    +D      H   V  + + P+ +
Sbjct: 193 VHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT 252
Query: 563 QLATASVDKSVRLWDAA 579
           ++A+AS DK++++W+ A
Sbjct: 253 KIASASADKTIKIWNVA 269

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 64/129 (49%), Gaps = 8/129 (6%)
Query: 499 EVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFR 558
           ++G ++  +S+V    + SDG  LAS G+D  V +W+  +   + T  +H + V  V + 
Sbjct: 209 QIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWC 268
Query: 559 P-NSSQLAT--ASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFC---FCD 612
           P  S+ LAT   ++DK +  W+AA     +    G  S + SL + P   ++     F D
Sbjct: 269 PWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAG--SQVTSLIWSPHSKEIMSTHGFPD 326
Query: 613 NDNEIQYWS 621
           N+  I  +S
Sbjct: 327 NNLSIWSYS 335

>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade Length = 379

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 73/182 (40%), Gaps = 25/182 (13%)
Query: 548 HKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNF-CSQAYTGHSSPIMSLDF-HPKKT 605
           H  ++ D        +LAT S DK++++++            TGH  P+  +D+ HPK  
Sbjct: 10  HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 69
Query: 606 DLFCFCDNDNEIQYWSINPFLCTHIT-----KGGTAQVRFQP-RIGQ-LLAAASDKVVSI 658
            +   C  D ++  W       + I            V++ P   G  LL A+SD  VS+
Sbjct: 70  TILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSV 129
Query: 659 FDIETDRQTHS--LQGHAELVNYICW---------DTNG-----DYLASVSQNLVKVWSM 702
            + + +  T    +  HA  VN   W         + NG      ++   + NLVK+W  
Sbjct: 130 VEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKY 189
Query: 703 AS 704
            S
Sbjct: 190 NS 191

>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 297

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 73/182 (40%), Gaps = 25/182 (13%)
Query: 548 HKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNF-CSQAYTGHSSPIMSLDF-HPKKT 605
           H  ++ D        ++AT S DK++++++            TGH  P+  +D+ HPK  
Sbjct: 8   HNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 606 DLFCFCDNDNEIQYWSINPFLCTHIT-----KGGTAQVRFQP-RIG-QLLAAASDKVVSI 658
            +   C  D ++  W       + I            V++ P   G  LL A+SD  VS+
Sbjct: 68  TILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSV 127
Query: 659 FDIETDRQTHS--LQGHAELVNYICW---------DTNG-----DYLASVSQNLVKVWSM 702
            + + +  T    +  HA  VN   W         + NG      ++   + NLVK+W  
Sbjct: 128 VEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKY 187
Query: 703 AS 704
            S
Sbjct: 188 NS 189

>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Native Version Length = 297

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 73/182 (40%), Gaps = 25/182 (13%)
Query: 548 HKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNF-CSQAYTGHSSPIMSLDF-HPKKT 605
           H  ++ D        +LAT S DK++++++            TGH  P+  +D+ HPK  
Sbjct: 8   HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 606 DLFCFCDNDNEIQYWSINPFLCTHIT-----KGGTAQVRFQP-RIGQ-LLAAASDKVVSI 658
            +   C  D ++  W       + I            V++ P   G  LL A+SD  VS+
Sbjct: 68  TILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSV 127
Query: 659 FDIETDRQTHS--LQGHAELVNYICW---------DTNG-----DYLASVSQNLVKVWSM 702
            + + +  T    +  HA  VN   W         + NG      ++   + NLVK+W  
Sbjct: 128 VEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKY 187
Query: 703 AS 704
            S
Sbjct: 188 NS 189

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 50/244 (20%), Positives = 96/244 (39%), Gaps = 50/244 (20%)
Query: 514 HFSSDGKL------LASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATA 567
           HF SD  L        SS  D+ + LW++ T  T      H+S V  V F P++ Q+ +A
Sbjct: 77  HFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSA 136
Query: 568 SVDKSVRLWDA-ANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFL 626
             ++ ++LW+      F S     HS  +  + + P          + N++Q     PF 
Sbjct: 137 GAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSP-------IMKSANKVQ-----PFA 184
Query: 627 CTHITKGGTAQVR-----FQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYIC 681
               + G   +++     FQ R                        ++ + H   VN++ 
Sbjct: 185 PYFASVGWDGRLKVWNTNFQIR------------------------YTFKAHESNVNHLS 220
Query: 682 WDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLE 740
              NG Y+A+  ++  + +W + +    Q     G+  +   F+P     + VG    ++
Sbjct: 221 ISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQ-WVAVGTDQGVK 279
Query: 741 LWNM 744
           ++N+
Sbjct: 280 IFNL 283

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	784
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.98
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.98
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.97
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.97
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.97
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.97
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.97
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.97
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.97
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.97
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
3jro_A	753	Fusion protein of protein transport protein SEC13	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.96
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.96
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.96
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.95
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.95
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.95
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.95
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.95
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.94
3jro_A	753	Fusion protein of protein transport protein SEC13	99.94
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.94
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.94
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.93
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.92
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.92
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.92
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.91
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.91
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.91
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.91
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.91
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.9
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.9
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.9
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.89
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.89
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.89
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.89
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.89
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.88
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.88
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.87
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.86
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.85
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.85
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.85
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.85
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.85
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.84
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.84
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.84
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.83
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.83
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.8
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.8
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.79
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.79
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.79
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.78
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.77
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.75
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.75
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.74
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.73
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.73
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.72
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.72
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.72
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.71
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.71
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.7
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.7
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.69
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.69
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.68
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.67
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.66
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.66
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.64
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.63
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.63
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.62
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.61
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.61
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.6
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.58
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.58
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.57
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.57
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.57
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.55
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.54
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.51
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.51
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.5
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.5
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.47
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.47
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.44
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.44
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.42
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.41
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.41
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.4
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.4
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.38
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.38
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.37
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.36
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.36
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.34
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.3
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.29
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.28
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.27
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.26
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.25
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.21
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.18
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.17
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.17
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.15
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.15
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.14
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.14
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.13
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.09
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.05
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.97
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.97
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.95
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.93
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.93
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.92
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.91
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.89
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.88
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.87
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.86
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.81
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.79
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.78
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.78
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.74
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.73
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.72
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.72
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.71
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.67
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.66
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.65
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.63
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.62
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.61
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.59
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.59
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.58
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.58
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.54
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.53
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.5
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.5
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.49
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.43
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.41
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.39
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.39
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.37
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.37
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.36
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.35
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.33
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.28
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.28
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.25
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.25
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.24
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.22
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.16
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.15
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.09
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.08
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.05
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.0
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.98
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.97
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.95
3ott_A	758	Two-component system sensor histidine kinase; beta	97.93
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.89
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.84
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.81
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.79
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.78
3ott_A	758	Two-component system sensor histidine kinase; beta	97.76
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.75
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.74
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.66
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.65
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.62
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.62
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.62
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.57
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.56
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.56
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.54
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.53
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.5
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.49
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.39
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.35
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.34
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.31
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.27
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.25
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.23
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.22
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	97.04
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	97.02
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.95
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.9
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	96.87
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.82
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.82
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.81
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.63
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.53
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.43
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.34
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.32
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.13
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.09
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.95
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	95.94
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.85
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	95.84
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	95.8
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	95.72
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	95.66
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	95.57
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.51
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	95.48
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.3
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	95.28
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	95.15
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	94.83
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	94.59
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	94.26
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	93.96
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	93.8
3iot_A	449	Maltose-binding protein, huntingtin fusion protei;	93.34
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	93.05
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	92.9
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	91.49
1sqj_A	789	OXG-RCBH, oligoxyloglucan reducing-END-specific ce	90.42
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	89.87
1suu_A	312	DNA gyrase subunit A; topoisomerase,DNA gyrase, be	87.66
1suu_A	312	DNA gyrase subunit A; topoisomerase,DNA gyrase, be	87.63
3mvd_K	423	Regulator of chromosome condensation; protein-DNA	86.69
1sqj_A	789	OXG-RCBH, oligoxyloglucan reducing-END-specific ce	86.41
3no0_A	276	DNA gyrase subunit A; DNA topology, topoisomerase,	85.52
1uuj_A	88	Platelet-activating factor acetylhydrolase IB ALP	83.42
3l6v_A	370	GYRA, DNA gyrase subunit A; gyrase A C-terminal do	82.91
1zi0_A	307	DNA gyrase subunit A; beta pinwheel, topoisomerase	82.0
1qb3_A	150	Cyclin-dependent kinases regulatory subunit; cell	80.51

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=3.7e-42  Score=385.36  Aligned_cols=283  Identities=24%  Similarity=0.457  Sum_probs=265.4

Q ss_pred             EeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCC
Q 047260          500 VGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAA  579 (784)
Q Consensus       500 i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~  579 (784)
                      ...+.+|.+.|++++|+|++.+|++|+.||+|+|||+.+++....+.+|...|++++|+|++++|++|+.|++|+|||+.
T Consensus       101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~  180 (410)
T 1vyh_C          101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ  180 (410)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred             eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Confidence            44578999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEEEECCCcE
Q 047260          580 NPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLAAASDKVV  656 (784)
Q Consensus       580 ~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~~s~Dg~I  656 (784)
                      +.. +...+.+|...|.+++|+|++. ++++++.|+.|++||+++..++..+.   ..+.++.+++++..|++++.|+.|
T Consensus       181 ~~~-~~~~~~~h~~~V~~v~~~p~~~-~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v  258 (410)
T 1vyh_C          181 GFE-CIRTMHGHDHNVSSVSIMPNGD-HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV  258 (410)
T ss_dssp             SSC-EEECCCCCSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             CCc-eeEEEcCCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeE
Confidence            766 6778889999999999999987 78899999999999999888776554   568899999999999999999999


Q ss_pred             EEEECCCCeEEEEEeCCCCCEEEEEEcCC--------------------CCEEEEEeCC-eEEEEeCCCCceEEEeccCC
Q 047260          657 SIFDIETDRQTHSLQGHAELVNYICWDTN--------------------GDYLASVSQN-LVKVWSMASGECIQELSSNG  715 (784)
Q Consensus       657 ~IwDl~t~~~i~~l~~h~~~V~sl~~spd--------------------g~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~  715 (784)
                      ++||+++++....+.+|...|.+++|+|+                    +.+|++++.+ .|++||++++.++.++.+|.
T Consensus       259 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~  338 (410)
T 1vyh_C          259 RVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHD  338 (410)
T ss_dssp             EEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCS
T ss_pred             EEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCC
Confidence            99999999999999999999999999996                    6789999866 99999999999999999999


Q ss_pred             CceEEEEEecCCCEEEEEECCCeEEEEECCCCceE-EecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          716 NQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       716 ~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      ..|.+++|+|++.+|++++.|+.|++||+.+++++ .+.+|...|++++|+|++.+|++|+.||.|+|||
T Consensus       339 ~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~  408 (410)
T 1vyh_C          339 NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  408 (410)
T ss_dssp             SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Confidence            99999999999999999999999999999988766 7779999999999999999999999999999997

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=2.3e-41  Score=368.67  Aligned_cols=288  Identities=20%  Similarity=0.332  Sum_probs=264.5

Q ss_pred             cceeEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEE
Q 047260          495 FTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVR  574 (784)
Q Consensus       495 ~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~  574 (784)
                      ..+....++++|.+.|++++|+||+++|++|+.||+|+|||+.+++.+..+..|...|.+++|+|++++|++|+.|+.|+
T Consensus        43 ~~~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~  122 (340)
T 1got_B           43 IQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICS  122 (340)
T ss_dssp             CCCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEE
T ss_pred             ccchhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEE
Confidence            45667888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCCc---ceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEE
Q 047260          575 LWDAANPN---FCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLL  648 (784)
Q Consensus       575 IWdl~~~~---~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll  648 (784)
                      +||+.+..   .....+.+|...|.++.|++++  .+++++.|+.|++||+++...+..+.   ..+.+++|+|++..++
T Consensus       123 iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~  200 (340)
T 1got_B          123 IYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV  200 (340)
T ss_dssp             EEETTTCSBSCEEEEEEECCSSCEEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             EEECccCCCcceeEEEecCCCccEEEEEECCCC--cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEE
Confidence            99998753   2455677999999999999876  47889999999999999988776654   6789999999999999


Q ss_pred             EEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccC--CCceEEEEEec
Q 047260          649 AAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSN--GNQFHSCVFHP  725 (784)
Q Consensus       649 ~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~--~~~I~sl~fsp  725 (784)
                      +++.|+.|++||+++++.+..+.+|...|.+++|+|++.+|++++.+ .|+|||+++++.+..+..+  ...|.+++|+|
T Consensus       201 sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~  280 (340)
T 1got_B          201 SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK  280 (340)
T ss_dssp             EEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECT
T ss_pred             EEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECC
Confidence            99999999999999999999999999999999999999999999966 9999999999888777533  34799999999


Q ss_pred             CCCEEEEEECCCeEEEEECCCCceE-EecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          726 SYSTLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       726 dg~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      ++.+|++++.|+.|++||+.+++.. .+.+|.+.|.+++|+|++.+|++|+.||.|+|||
T Consensus       281 ~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          281 SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             TSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            9999999999999999999988776 6789999999999999999999999999999997

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=4.5e-41  Score=364.20  Aligned_cols=284  Identities=16%  Similarity=0.296  Sum_probs=259.3

Q ss_pred             EEeEeecCCCceEEEEEcCC----CCEEEEEeCCCeEEEEECCCCce--eeecCCCCCCeEEEEEccCCCEEEEEeCCCe
Q 047260          499 EVGCIRSRNSKVTCCHFSSD----GKLLASSGHDRKVVLWNMDTLQT--ESTPEDHKSVVTDVRFRPNSSQLATASVDKS  572 (784)
Q Consensus       499 ~i~~l~~H~~~V~~l~fspd----g~~Lasgs~Dg~I~IWd~~t~~~--~~~l~~h~~~It~i~fspdg~~Latgs~Dg~  572 (784)
                      .++.+.+|.+.|++++|+|+    +.+|++|+.|++|+|||+.+.+.  ...+.+|...|.+++|++++.++++++.|++
T Consensus        24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~  103 (321)
T 3ow8_A           24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAH  103 (321)
T ss_dssp             EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSE
T ss_pred             eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCc
Confidence            34567789999999999984    66999999999999999987653  4568899999999999999999999999999


Q ss_pred             EEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEE
Q 047260          573 VRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLA  649 (784)
Q Consensus       573 I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~  649 (784)
                      |++||+.+++ ....+..|...+.+++|+|++. ++++++.|+.|++||+++......+.   ..+.+++|+|++.+|++
T Consensus       104 i~lWd~~~~~-~~~~~~~~~~~~~~~~~spdg~-~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~las  181 (321)
T 3ow8_A          104 IRLWDLENGK-QIKSIDAGPVDAWTLAFSPDSQ-YLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLAS  181 (321)
T ss_dssp             EEEEETTTTE-EEEEEECCTTCCCCEEECTTSS-EEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEE
T ss_pred             EEEEECCCCC-EEEEEeCCCccEEEEEECCCCC-EEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEE
Confidence            9999999876 5667778888999999999987 78889999999999999877665543   56899999999999999


Q ss_pred             EECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCCC
Q 047260          650 AASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYS  728 (784)
Q Consensus       650 ~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~  728 (784)
                      ++.|+.|++||+++++.+..+.+|...|.+++|+|++.+|++++.+ .|+|||+++++++.++.+|...|.+++|+|++.
T Consensus       182 g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~  261 (321)
T 3ow8_A          182 GAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDT  261 (321)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS
T ss_pred             EcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCC
Confidence            9999999999999999999999999999999999999999999966 999999999999999999999999999999999


Q ss_pred             EEEEEECCCeEEEEECCCCceE-EecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          729 TLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       729 ~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      +|++++.|++|++||+.+++++ .+.+|...|.+++|+|++.+|++++.||.|+|||
T Consensus       262 ~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd  318 (321)
T 3ow8_A          262 HFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD  318 (321)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred             EEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEe
Confidence            9999999999999999999887 6779999999999999999999999999999997

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=9.1e-40  Score=358.71  Aligned_cols=289  Identities=17%  Similarity=0.287  Sum_probs=260.9

Q ss_pred             cceeEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEE
Q 047260          495 FTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVR  574 (784)
Q Consensus       495 ~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~  574 (784)
                      +.+.....+.+|.+.|+|++|+|++++||+|+.||+|+|||..+++....+..|...|.+++|+|++.+|++++.|+.|+
T Consensus        52 ~~~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~  131 (354)
T 2pbi_B           52 FVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCS  131 (354)
T ss_dssp             CCCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEE
T ss_pred             cccEEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEE
Confidence            34567888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCCc-----ceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEec--CC
Q 047260          575 LWDAANPN-----FCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQP--RI  644 (784)
Q Consensus       575 IWdl~~~~-----~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp--~~  644 (784)
                      +|++....     .....+.+|...|.+++|+|++. .+++++.|+.|++||+++.+++..+.   ..+.++.|+|  ++
T Consensus       132 v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g  210 (354)
T 2pbi_B          132 VYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM-QILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETG  210 (354)
T ss_dssp             EEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSC
T ss_pred             EEEEeccccccccccceeeeccCCcEEEEEEeCCCC-EEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCC
Confidence            99986532     23455668999999999999976 67789999999999999887776554   5688888887  46


Q ss_pred             CEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccC--CCceEEE
Q 047260          645 GQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSN--GNQFHSC  721 (784)
Q Consensus       645 ~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~--~~~I~sl  721 (784)
                      ..|++++.|+.|++||+++++++..+.+|...|++++|+|++.+|++++.| +|++||++.++.+..+..+  ...+.++
T Consensus       211 ~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~  290 (354)
T 2pbi_B          211 NTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSV  290 (354)
T ss_dssp             CEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEE
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEE
Confidence            799999999999999999999999999999999999999999999999966 9999999999888777644  3468999


Q ss_pred             EEecCCCEEEEEECCCeEEEEECCCCceE-EecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          722 VFHPSYSTLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       722 ~fspdg~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      +|+|++.+|++++.|+.|++||+.+++.+ .+.+|.+.|++++|+|++.+|++|+.||.|+||+
T Consensus       291 ~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          291 DFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             EEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            99999999999999999999999888776 6779999999999999999999999999999997

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=6.8e-41  Score=370.92  Aligned_cols=289  Identities=18%  Similarity=0.320  Sum_probs=260.5

Q ss_pred             ceeEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEE
Q 047260          496 TFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRL  575 (784)
Q Consensus       496 ~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~I  575 (784)
                      .+....++.+|.+.|++++|+|++++|++|+.||+|+|||+.+++....+..|...|.+++|+|++++|++|+.|+.|+|
T Consensus        55 ~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~i  134 (380)
T 3iz6_a           55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSI  134 (380)
T ss_dssp             CCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEE
T ss_pred             eeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEE
Confidence            45677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCCCc------ceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEee--------cCCeeEEEEe
Q 047260          576 WDAANPN------FCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHIT--------KGGTAQVRFQ  641 (784)
Q Consensus       576 Wdl~~~~------~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~--------~~~v~~v~fs  641 (784)
                      ||+.+..      .....+.+|.+.|.++.|.|++...|++|+.|+.|++||+++..++..+        ...+.++.|+
T Consensus       135 w~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~  214 (380)
T 3iz6_a          135 FNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSIN  214 (380)
T ss_dssp             EECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEEC
T ss_pred             EECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEee
Confidence            9987532      2345678999999999999988878999999999999999988777554        3568889997


Q ss_pred             c-CCCEEEEEECCCcEEEEECC-CCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCC---
Q 047260          642 P-RIGQLLAAASDKVVSIFDIE-TDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNG---  715 (784)
Q Consensus       642 p-~~~~Ll~~s~Dg~I~IwDl~-t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~---  715 (784)
                      + ++..|++++.|+.|++||++ ..+.+..+.+|...|.+++|+|++.+|+++++| +|+|||+++++++..+..+.   
T Consensus       215 ~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~  294 (380)
T 3iz6_a          215 SLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRN  294 (380)
T ss_dssp             SSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSS
T ss_pred             cCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccccccc
Confidence            7 77899999999999999998 457888899999999999999999999999966 99999999999988886543   


Q ss_pred             ----CceEEEEEecCCCEEEEEECCCeEEEEECCCCceE-Ee----cccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          716 ----NQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM-TI----AAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       716 ----~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~-~~----~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                          ..|.+++|+|++.+|++++.||.|++||+..++.. .+    .+|.+.|++++|+|++.+|++|+.||.|+||+
T Consensus       295 ~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~  372 (380)
T 3iz6_a          295 DNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWA  372 (380)
T ss_dssp             CCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEE
T ss_pred             ccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEe
Confidence                24899999999999999999999999999988776 33    57999999999999999999999999999996

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.4e-39  Score=348.92  Aligned_cols=282  Identities=18%  Similarity=0.299  Sum_probs=253.1

Q ss_pred             eEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEc
Q 047260          498 CEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWD  577 (784)
Q Consensus       498 ~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWd  577 (784)
                      ...+++.+|.+.|++++|+|++++|++|+.||.|+|||+.++..+..+..|...|.+++|+|++++|++|+.|++|++||
T Consensus         4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd   83 (304)
T 2ynn_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN   83 (304)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred             eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEE
Confidence            45667899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC-eeEE---eecCCeeEEEEec-CCCEEEEEEC
Q 047260          578 AANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPF-LCTH---ITKGGTAQVRFQP-RIGQLLAAAS  652 (784)
Q Consensus       578 l~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~-~~~~---~~~~~v~~v~fsp-~~~~Ll~~s~  652 (784)
                      +.+++ ....+.+|...|.+++|+|++. ++++++.|+.|++||+++. ....   .+...+.+++|+| ++..|++++.
T Consensus        84 ~~~~~-~~~~~~~h~~~v~~~~~~~~~~-~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~  161 (304)
T 2ynn_A           84 YNTGE-KVVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL  161 (304)
T ss_dssp             TTTCC-EEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEET
T ss_pred             CCCCc-EEEEEeCCCCcEEEEEEcCCCC-EEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeC
Confidence            99877 6677889999999999999987 7889999999999999865 3333   3456789999999 5688999999


Q ss_pred             CCcEEEEECCCCeEEEEEe-CCCCCEEEEEEcC--CCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCCC
Q 047260          653 DKVVSIFDIETDRQTHSLQ-GHAELVNYICWDT--NGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYS  728 (784)
Q Consensus       653 Dg~I~IwDl~t~~~i~~l~-~h~~~V~sl~~sp--dg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~  728 (784)
                      |+.|++||++.......+. +|...+..++|+|  ++.+|++++.+ .|+|||+++++++.++.+|...|.+++|+|++.
T Consensus       162 D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~  241 (304)
T 2ynn_A          162 DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP  241 (304)
T ss_dssp             TSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSS
T ss_pred             CCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCC
Confidence            9999999998887666654 4668899999987  77899999966 999999999999999999999999999999999


Q ss_pred             EEEEEECCCeEEEEECCCCceE-EecccCCceEEEEEeCCCC--EEEEEECCCcEE
Q 047260          729 TLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTG--MVASASHDSSVK  781 (784)
Q Consensus       729 ~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg~--~LaSgs~DG~V~  781 (784)
                      +|++++.||+|++||+.+++.. .+..|...+.+++|+|++.  +|++|+.||.+.
T Consensus       242 ~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~  297 (304)
T 2ynn_A          242 IIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTV  297 (304)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTEEEE
T ss_pred             EEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCceEE
Confidence            9999999999999999998877 6778899999999999875  688888777543

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.1e-39  Score=384.13  Aligned_cols=320  Identities=20%  Similarity=0.302  Sum_probs=269.9

Q ss_pred             CCCCcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEE
Q 047260          436 GTGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHF  515 (784)
Q Consensus       436 ~~~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~f  515 (784)
                      ++...+.++.|.++....+.+|+.|+++++|+..                          +...+..+.+|.+.|++++|
T Consensus       145 gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~--------------------------~~~~~~~l~~H~~~V~~v~f  198 (611)
T 1nr0_A          145 GQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGP--------------------------PFKFKSTFGEHTKFVHSVRY  198 (611)
T ss_dssp             CCSSCEEEEEECSSSSCEEEEEETTSCEEEEETT--------------------------TBEEEEEECCCSSCEEEEEE
T ss_pred             CCCCCceEEEECCCCCeEEEEEeCCCeEEEEECC--------------------------CCeEeeeeccccCceEEEEE
Confidence            4455567777877776666789999999999641                          12345678899999999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEECCCCceeeecC-------CCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcce----
Q 047260          516 SSDGKLLASSGHDRKVVLWNMDTLQTESTPE-------DHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFC----  584 (784)
Q Consensus       516 spdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~-------~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~----  584 (784)
                      +|||++||+|+.|++|+|||+.+++.+..+.       +|.+.|++++|+|++++|++++.|++|+|||+.+++..    
T Consensus       199 spdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~  278 (611)
T 1nr0_A          199 NPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIP  278 (611)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             CCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeec
Confidence            9999999999999999999999998888774       79999999999999999999999999999999875421    


Q ss_pred             --------------------------------------eeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe
Q 047260          585 --------------------------------------SQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFL  626 (784)
Q Consensus       585 --------------------------------------~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~  626 (784)
                                                            ...+.+|...|.+++|+|++. +|++++.|+.|++||+.+..
T Consensus       279 ~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~-~l~s~s~D~~v~~Wd~~~~~  357 (611)
T 1nr0_A          279 VGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGK-TLFSADAEGHINSWDISTGI  357 (611)
T ss_dssp             CCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCC
T ss_pred             CCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCC-EEEEEeCCCcEEEEECCCCc
Confidence                                                  123458999999999999987 77899999999999987543


Q ss_pred             eEEee---------------------------------------------------------------------------
Q 047260          627 CTHIT---------------------------------------------------------------------------  631 (784)
Q Consensus       627 ~~~~~---------------------------------------------------------------------------  631 (784)
                      +...+                                                                           
T Consensus       358 ~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~  437 (611)
T 1nr0_A          358 SNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIY  437 (611)
T ss_dssp             EEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEE
T ss_pred             eeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEE
Confidence            32111                                                                           


Q ss_pred             ----------cCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeE--EEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEE
Q 047260          632 ----------KGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQ--THSLQGHAELVNYICWDTNGDYLASVSQN-LVK  698 (784)
Q Consensus       632 ----------~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~--i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~  698 (784)
                                ...+.+++|+|++.+|++++.|+.|++||+..+..  +.. .+|...|++++|+|+|++|++++.+ .|+
T Consensus       438 ~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~  516 (611)
T 1nr0_A          438 SHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVI  516 (611)
T ss_dssp             ETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             eCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEE
Confidence                      12356789999999999999999999999987653  333 6799999999999999999999966 999


Q ss_pred             EEeCCC-CceEEE--eccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCc-e--EEeccc-CCceEEEEEeCCCCEE
Q 047260          699 VWSMAS-GECIQE--LSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENK-S--MTIAAH-ENIISALAQSPVTGMV  771 (784)
Q Consensus       699 IwDl~t-~~~i~~--l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~-~--~~~~~h-~~~V~slafspdg~~L  771 (784)
                      +||+.+ ++++..  +..|...|.+++|+|++++|++++.|++|+|||+.++. .  ..+.+| ...|.+++|+|++. |
T Consensus       517 ~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l  595 (611)
T 1nr0_A          517 PYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-I  595 (611)
T ss_dssp             EEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-E
T ss_pred             EEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-E
Confidence            999987 665543  33489999999999999999999999999999998765 2  345688 89999999999998 9


Q ss_pred             EEEECCCcEEEeC
Q 047260          772 ASASHDSSVKLWK  784 (784)
Q Consensus       772 aSgs~DG~V~IWd  784 (784)
                      ++++.|++|++||
T Consensus       596 ~s~~~D~~i~lW~  608 (611)
T 1nr0_A          596 VSAGQDSNIKFWN  608 (611)
T ss_dssp             EEEETTSCEEEEE
T ss_pred             EEecCCCCEEEEe
Confidence            9999999999996

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=3.8e-39  Score=352.08  Aligned_cols=288  Identities=24%  Similarity=0.461  Sum_probs=248.2

Q ss_pred             ceeEEeEeecCCC-ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcee---eecCCCCCCeEEEEEccCCCEEEEEeCCC
Q 047260          496 TFCEVGCIRSRNS-KVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTE---STPEDHKSVVTDVRFRPNSSQLATASVDK  571 (784)
Q Consensus       496 ~~~~i~~l~~H~~-~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~---~~l~~h~~~It~i~fspdg~~Latgs~Dg  571 (784)
                      .+..+..+.+|.+ .|++++|+|+|++||+|+.|++|+|||+.++...   ....+|...|++++|+|++++|++|+.|+
T Consensus         4 ~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~   83 (345)
T 3fm0_A            4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA   83 (345)
T ss_dssp             CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             cEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC
Confidence            3467788999988 9999999999999999999999999999877533   23368999999999999999999999999


Q ss_pred             eEEEEcCCCCc-ceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC---eeEEe---ecCCeeEEEEecCC
Q 047260          572 SVRLWDAANPN-FCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPF---LCTHI---TKGGTAQVRFQPRI  644 (784)
Q Consensus       572 ~I~IWdl~~~~-~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~---~~~~~---~~~~v~~v~fsp~~  644 (784)
                      +|+|||+.... .+...+.+|...|.+++|+|++. +|++++.|+.|++||++..   .++..   +...+.+++|+|++
T Consensus        84 ~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~  162 (345)
T 3fm0_A           84 TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN-LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQ  162 (345)
T ss_dssp             CEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSS
T ss_pred             cEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCC-EEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCC
Confidence            99999998764 35677889999999999999986 8889999999999999764   23333   44678999999999


Q ss_pred             CEEEEEECCCcEEEEECCCCe--EEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCC---------------c
Q 047260          645 GQLLAAASDKVVSIFDIETDR--QTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASG---------------E  706 (784)
Q Consensus       645 ~~Ll~~s~Dg~I~IwDl~t~~--~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~---------------~  706 (784)
                      .+|++++.|+.|++||++.++  +...+.+|...|.+++|+|++++|++++.| +|+|||....               +
T Consensus       163 ~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~  242 (345)
T 3fm0_A          163 ELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWK  242 (345)
T ss_dssp             SCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEE
T ss_pred             CEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccc
Confidence            999999999999999998875  456788999999999999999999999966 9999996321               3


Q ss_pred             eEEEecc-CCCceEEEEEecCCCEEEEEECCCeEEEEECCCCce-------E---EecccCCceEEEEEeCCC-CEEEEE
Q 047260          707 CIQELSS-NGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKS-------M---TIAAHENIISALAQSPVT-GMVASA  774 (784)
Q Consensus       707 ~i~~l~~-~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~-------~---~~~~h~~~V~slafspdg-~~LaSg  774 (784)
                      ++..+.+ |...|.+++|+|++..|++++.|+.|++|+...+..       +   ...+|...|++|+|+|++ .+||+|
T Consensus       243 ~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~  322 (345)
T 3fm0_A          243 CICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASC  322 (345)
T ss_dssp             EEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEE
T ss_pred             eeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEc
Confidence            4555655 788999999999999999999999999999876431       1   234799999999999998 499999


Q ss_pred             ECCCcEEEeC
Q 047260          775 SHDSSVKLWK  784 (784)
Q Consensus       775 s~DG~V~IWd  784 (784)
                      +.||.|+|||
T Consensus       323 s~Dg~v~~W~  332 (345)
T 3fm0_A          323 SDDGEVAFWK  332 (345)
T ss_dssp             ETTSCEEEEE
T ss_pred             CCCCcEEEEE
Confidence            9999999996

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.8e-38  Score=339.85  Aligned_cols=287  Identities=22%  Similarity=0.461  Sum_probs=258.5

Q ss_pred             ceeEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEE
Q 047260          496 TFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRL  575 (784)
Q Consensus       496 ~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~I  575 (784)
                      .+....++.+|.+.|++++|+|++++|++|+.||.|+||++.+++....+.+|...|.+++|+|++++|++++.|+.|++
T Consensus        12 ~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~v   91 (312)
T 4ery_A           12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKI   91 (312)
T ss_dssp             CCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             CceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEE
Confidence            35667788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEEEEC
Q 047260          576 WDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLAAAS  652 (784)
Q Consensus       576 Wdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~~s~  652 (784)
                      ||+++++ +...+.+|...|.+++|+|++. ++++++.|+.|++||+++.+++..+.   ..+.++.|+|++..+++++.
T Consensus        92 wd~~~~~-~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  169 (312)
T 4ery_A           92 WDVSSGK-CLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY  169 (312)
T ss_dssp             EETTTCC-EEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             EECCCCc-EEEEEcCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeC
Confidence            9999876 6677889999999999999976 78889999999999999887766554   67899999999999999999


Q ss_pred             CCcEEEEECCCCeEEEEEe-CCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEE--EEE-ecCC
Q 047260          653 DKVVSIFDIETDRQTHSLQ-GHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHS--CVF-HPSY  727 (784)
Q Consensus       653 Dg~I~IwDl~t~~~i~~l~-~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~s--l~f-spdg  727 (784)
                      |+.|++||+++++.+..+. .+...+.+++|+|++++|++++.+ .|++||+++++++..+..|...+.+  ..+ .+++
T Consensus       170 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (312)
T 4ery_A          170 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG  249 (312)
T ss_dssp             TSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSS
T ss_pred             CCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCC
Confidence            9999999999998887765 466789999999999999999855 9999999999999999887665432  233 4678


Q ss_pred             CEEEEEECCCeEEEEECCCCceE-EecccCCceEEEEEeCCCCEEEEEE--CCCcEEEeC
Q 047260          728 STLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASAS--HDSSVKLWK  784 (784)
Q Consensus       728 ~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg~~LaSgs--~DG~V~IWd  784 (784)
                      .+|++++.||.|++||+.+++.+ .+.+|...|.+++|+|++.+|++++  .|+.|+||+
T Consensus       250 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~  309 (312)
T 4ery_A          250 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK  309 (312)
T ss_dssp             CEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEE
T ss_pred             cEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEec
Confidence            89999999999999999998877 6779999999999999999999997  699999996

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.6e-38  Score=343.25  Aligned_cols=285  Identities=22%  Similarity=0.378  Sum_probs=250.2

Q ss_pred             ceeEEeEeecCCCceEEEEEcCCC-CEEEEEeCCCeEEEEECCC-----CceeeecCCCCCCeEEEEEccCCCEEEEEeC
Q 047260          496 TFCEVGCIRSRNSKVTCCHFSSDG-KLLASSGHDRKVVLWNMDT-----LQTESTPEDHKSVVTDVRFRPNSSQLATASV  569 (784)
Q Consensus       496 ~~~~i~~l~~H~~~V~~l~fspdg-~~Lasgs~Dg~I~IWd~~t-----~~~~~~l~~h~~~It~i~fspdg~~Latgs~  569 (784)
                      .+....++.+|.+.|++++|+|++ ++|++|+.|++|++|++..     +..+..+.+|...|++++|+|++++|++|+.
T Consensus         6 ~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~   85 (319)
T 3frx_A            6 VLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASW   85 (319)
T ss_dssp             EEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeC
Confidence            456678899999999999999965 8999999999999999863     3456778899999999999999999999999


Q ss_pred             CCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEE--eecCCeeEEEEecC----
Q 047260          570 DKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTH--ITKGGTAQVRFQPR----  643 (784)
Q Consensus       570 Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~--~~~~~v~~v~fsp~----  643 (784)
                      |++|+|||+.+++ ....+.+|...|.+++|+|++. ++++++.|+.|++||++......  .+...+.++.|.|.    
T Consensus        86 D~~v~~wd~~~~~-~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~  163 (319)
T 3frx_A           86 DKTLRLWDVATGE-TYQRFVGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKAD  163 (319)
T ss_dssp             TSEEEEEETTTTE-EEEEEECCSSCEEEEEECTTSC-EEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC----
T ss_pred             CCEEEEEECCCCC-eeEEEccCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCC
Confidence            9999999999876 6777889999999999999876 88899999999999998543322  23467889999885    


Q ss_pred             --CCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEE
Q 047260          644 --IGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHS  720 (784)
Q Consensus       644 --~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~s  720 (784)
                        +..+++++.|+.|++||+++.+....+.+|...|.+++|+|++.+|++++.| .|+|||+.+++++..+..+ ..|.+
T Consensus       164 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~  242 (319)
T 3frx_A          164 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFS  242 (319)
T ss_dssp             --CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC-SCEEE
T ss_pred             CCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CcEEE
Confidence              4479999999999999999999999999999999999999999999999965 9999999999999988765 68999


Q ss_pred             EEEecCCCEEEEEECCCeEEEEECCCCceEE-e--------cccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          721 CVFHPSYSTLLVVGGISSLELWNMAENKSMT-I--------AAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       721 l~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~-~--------~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      ++|+|++.+|++++.+ .+++|++....... +        ..|...|.+++|+|||++|++|+.||.|+|||
T Consensus       243 ~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd  314 (319)
T 3frx_A          243 LAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ  314 (319)
T ss_dssp             EEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             EEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEE
Confidence            9999999988887755 59999998776542 2        24567899999999999999999999999996

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=2.9e-38  Score=351.34  Aligned_cols=278  Identities=23%  Similarity=0.416  Sum_probs=246.8

Q ss_pred             ecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCC------------------CeEEEEEccCCCEEE
Q 047260          504 RSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKS------------------VVTDVRFRPNSSQLA  565 (784)
Q Consensus       504 ~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~------------------~It~i~fspdg~~La  565 (784)
                      .+|.+.|+|++|+|||++||+|+ ++.|+||++.+++.+..+..|..                  .|++++|+|++++|+
T Consensus        61 ~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~  139 (393)
T 1erj_A           61 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA  139 (393)
T ss_dssp             EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred             cCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEE
Confidence            36999999999999999999976 78899999999998887765542                  499999999999999


Q ss_pred             EEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEee--cCCeeEEEEec-
Q 047260          566 TASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHIT--KGGTAQVRFQP-  642 (784)
Q Consensus       566 tgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~--~~~v~~v~fsp-  642 (784)
                      +|+.|++|+|||+.+++ ....+.+|...|.+++|+|++. .+++++.|+.|++||+++..+...+  ...+.+++|+| 
T Consensus       140 s~~~d~~i~iwd~~~~~-~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~  217 (393)
T 1erj_A          140 TGAEDRLIRIWDIENRK-IVMILQGHEQDIYSLDYFPSGD-KLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPG  217 (393)
T ss_dssp             EEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECST
T ss_pred             EEcCCCeEEEEECCCCc-EEEEEccCCCCEEEEEEcCCCC-EEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECC
Confidence            99999999999999866 6677889999999999999987 7788999999999999988776544  46789999999 


Q ss_pred             CCCEEEEEECCCcEEEEECCCCeEEEEE-------eCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCC----------
Q 047260          643 RIGQLLAAASDKVVSIFDIETDRQTHSL-------QGHAELVNYICWDTNGDYLASVSQN-LVKVWSMAS----------  704 (784)
Q Consensus       643 ~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l-------~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t----------  704 (784)
                      ++.+|++++.|+.|++||+++++.+..+       .+|...|.+++|+|++.+|++++.| .|++||+++          
T Consensus       218 ~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~  297 (393)
T 1erj_A          218 DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP  297 (393)
T ss_dssp             TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC------------
T ss_pred             CCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCC
Confidence            8899999999999999999999887776       5789999999999999999999965 999999975          


Q ss_pred             --CceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE-EecccCCceEEEEEeC------CCCEEEEEE
Q 047260          705 --GECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSP------VTGMVASAS  775 (784)
Q Consensus       705 --~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafsp------dg~~LaSgs  775 (784)
                        +.+...+.+|...|.+++|+|++.+|++++.|+.|++||+.+++.+ .+.+|...|.+++|++      ++.+|++|+
T Consensus       298 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs  377 (393)
T 1erj_A          298 NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGS  377 (393)
T ss_dssp             ---CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEE
T ss_pred             CCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEEC
Confidence              3456678889999999999999999999999999999999998877 6779999999999986      678999999


Q ss_pred             CCCcEEEeC
Q 047260          776 HDSSVKLWK  784 (784)
Q Consensus       776 ~DG~V~IWd  784 (784)
                      .||.|+|||
T Consensus       378 ~Dg~i~iW~  386 (393)
T 1erj_A          378 GDCKARIWK  386 (393)
T ss_dssp             TTSEEEEEE
T ss_pred             CCCcEEECc
Confidence            999999996

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=6.1e-38  Score=341.79  Aligned_cols=285  Identities=19%  Similarity=0.340  Sum_probs=243.6

Q ss_pred             cceeEEeEeecCCCceEEEEE-----cC-CCCEEEEEeCCCeEEEEECCCC-------ceeeecCCCCCCeEEEEEccCC
Q 047260          495 FTFCEVGCIRSRNSKVTCCHF-----SS-DGKLLASSGHDRKVVLWNMDTL-------QTESTPEDHKSVVTDVRFRPNS  561 (784)
Q Consensus       495 ~~~~~i~~l~~H~~~V~~l~f-----sp-dg~~Lasgs~Dg~I~IWd~~t~-------~~~~~l~~h~~~It~i~fspdg  561 (784)
                      ..+.....+.+|.+.|++++|     ++ ++++|++|+.|++|+|||+.+.       .....+.+|...|++++|+|++
T Consensus         9 ~~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~   88 (343)
T 2xzm_R            9 IQVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN   88 (343)
T ss_dssp             EEEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSST
T ss_pred             eEeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCC
Confidence            345677889999999999999     77 9999999999999999999753       4566788999999999999999


Q ss_pred             CEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEE-----eecCCee
Q 047260          562 SQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTH-----ITKGGTA  636 (784)
Q Consensus       562 ~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~-----~~~~~v~  636 (784)
                      .+|++|+.|++|+|||+++++ ....+.+|...|.+++|+|++. ++++++.|+.|++||+.......     .+...+.
T Consensus        89 ~~l~s~s~D~~v~lwd~~~~~-~~~~~~~h~~~v~~v~~sp~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~  166 (343)
T 2xzm_R           89 CFAISSSWDKTLRLWDLRTGT-TYKRFVGHQSEVYSVAFSPDNR-QILSAGAEREIKLWNILGECKFSSAEKENHSDWVS  166 (343)
T ss_dssp             TEEEEEETTSEEEEEETTSSC-EEEEEECCCSCEEEEEECSSTT-EEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEE
T ss_pred             CEEEEEcCCCcEEEEECCCCc-EEEEEcCCCCcEEEEEECCCCC-EEEEEcCCCEEEEEeccCCceeeeecccCCCceee
Confidence            999999999999999999876 6677889999999999999987 77889999999999998543332     2345689


Q ss_pred             EEEEecCC----------CEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCC-
Q 047260          637 QVRFQPRI----------GQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMAS-  704 (784)
Q Consensus       637 ~v~fsp~~----------~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t-  704 (784)
                      +++|+|++          .++++++.|+.|++|| ...+....+.+|...|.+++|+|+|++|++++.+ .|+|||+.. 
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~  245 (343)
T 2xzm_R          167 CVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNL  245 (343)
T ss_dssp             EEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCC
T ss_pred             eeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence            99999987          6899999999999999 4567778889999999999999999999999965 999999954 


Q ss_pred             CceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE---Eec-----------ccCCceEEEEEeCCCCE
Q 047260          705 GECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM---TIA-----------AHENIISALAQSPVTGM  770 (784)
Q Consensus       705 ~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~---~~~-----------~h~~~V~slafspdg~~  770 (784)
                      ......+ .+...|.+++|+|++.+++ ++.|+.|++||+.+++..   .+.           +|...|.+++|+|++++
T Consensus       246 ~~~~~~~-~~~~~v~~v~~sp~~~~la-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~  323 (343)
T 2xzm_R          246 TYPQREF-DAGSTINQIAFNPKLQWVA-VGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKK  323 (343)
T ss_dssp             SSCSEEE-ECSSCEEEEEECSSSCEEE-EEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCC
T ss_pred             cccceee-cCCCcEEEEEECCCCCEEE-EECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCe
Confidence            4444444 3456799999999998665 556788999999876543   222           67888999999999999


Q ss_pred             EEEEECCCcEEEeC
Q 047260          771 VASASHDSSVKLWK  784 (784)
Q Consensus       771 LaSgs~DG~V~IWd  784 (784)
                      |++|+.||.|++||
T Consensus       324 l~sg~~Dg~v~~w~  337 (343)
T 2xzm_R          324 LFAGFTDGVIRTFS  337 (343)
T ss_dssp             EEEEETTSEEEEEE
T ss_pred             EEEecCCceEEEEE
Confidence            99999999999996

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.1e-37  Score=361.85  Aligned_cols=281  Identities=29%  Similarity=0.479  Sum_probs=252.2

Q ss_pred             eEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEc
Q 047260          498 CEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWD  577 (784)
Q Consensus       498 ~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWd  577 (784)
                      ..+..+.+|...|++++|+|++++|++++.|+.|++||... ..+..+..|...|.+++|+|++++|++++.|+.|++||
T Consensus       294 ~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~  372 (577)
T 2ymu_A          294 QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN  372 (577)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             cEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC-CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEc
Confidence            34567889999999999999999999999999999999875 55667789999999999999999999999999999999


Q ss_pred             CCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe--eEEeecCCeeEEEEecCCCEEEEEECCCc
Q 047260          578 AANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFL--CTHITKGGTAQVRFQPRIGQLLAAASDKV  655 (784)
Q Consensus       578 l~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~--~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~  655 (784)
                      ... + ....+.+|...|.+++|+|++. +|++++.|+.|++||.....  .+..+...+.+++|+|++.+|++++.|+.
T Consensus       373 ~~~-~-~~~~~~~~~~~v~~~~~s~dg~-~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~  449 (577)
T 2ymu_A          373 RNG-Q-LLQTLTGHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKT  449 (577)
T ss_dssp             TTC-C-EEEEEECCSSCEEEEEECTTSS-CEEEEETTSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             CCC-C-EEEEecCCCCCeEEEEECCCCC-EEEEEeCCCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCE
Confidence            653 3 5677889999999999999987 67788899999999976432  22345578999999999999999999999


Q ss_pred             EEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEE
Q 047260          656 VSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVG  734 (784)
Q Consensus       656 I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s  734 (784)
                      |++||. +++.+..+.+|...|.+++|+|++++|++++++ .|+|||. +++++..+.+|...|++++|+|++++|++++
T Consensus       450 v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~  527 (577)
T 2ymu_A          450 VKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASAS  527 (577)
T ss_dssp             EEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEE
T ss_pred             EEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEE
Confidence            999996 567888899999999999999999999999866 9999995 6889999999999999999999999999999


Q ss_pred             CCCeEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          735 GISSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       735 ~dg~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      .|+.|+|||........+.+|.+.|++++|+||+++|+|++.|++|+|||
T Consensus       528 ~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          528 DDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             TTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CcCEEEEEeCCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence            99999999975544458889999999999999999999999999999998

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.4e-38  Score=349.89  Aligned_cols=279  Identities=13%  Similarity=0.195  Sum_probs=236.1

Q ss_pred             ecCCCceEEEEEcCCCCEEEEEeC------CCeEEEEECCCCceeee----cCCCCCCeEEEEEccCCCEEEEEeCCCeE
Q 047260          504 RSRNSKVTCCHFSSDGKLLASSGH------DRKVVLWNMDTLQTEST----PEDHKSVVTDVRFRPNSSQLATASVDKSV  573 (784)
Q Consensus       504 ~~H~~~V~~l~fspdg~~Lasgs~------Dg~I~IWd~~t~~~~~~----l~~h~~~It~i~fspdg~~Latgs~Dg~I  573 (784)
                      ..|+..|++++|+|||++||+|+.      |+.|++|+..++.....    ...|...|++++|+|++. +++++.||+|
T Consensus        39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v  117 (357)
T 4g56_B           39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAV  117 (357)
T ss_dssp             -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCE
T ss_pred             ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEE
Confidence            469999999999999999999997      78899999887654433    346889999999999875 5677889999


Q ss_pred             EEEcCCCCccee---eeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCC-E
Q 047260          574 RLWDAANPNFCS---QAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIG-Q  646 (784)
Q Consensus       574 ~IWdl~~~~~~~---~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~-~  646 (784)
                      +|||+.+++...   ....+|...|.+++|+|++. +|++++.|+.|++||+++.+++..+.   ..+.+++|++++. .
T Consensus       118 ~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~  196 (357)
T 4g56_B          118 ELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT-QAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTI  196 (357)
T ss_dssp             EEC--------CCCCEEECCCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSC
T ss_pred             EEeeccccceeEEEeeccCCCCCCEEEEEECCCCC-EEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCce
Confidence            999998765322   23458999999999999987 78889999999999999988877654   6789999999875 6


Q ss_pred             EEEEECCCcEEEEECCCCeEEEEEe--CCCCCEEEEEEcCC-CCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEE
Q 047260          647 LLAAASDKVVSIFDIETDRQTHSLQ--GHAELVNYICWDTN-GDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCV  722 (784)
Q Consensus       647 Ll~~s~Dg~I~IwDl~t~~~i~~l~--~h~~~V~sl~~spd-g~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~  722 (784)
                      +++++.|+.|++||+++++.+..+.  .+...+.+++|+|+ +.+|++++.+ .|++||+++++++.++..|...|.+++
T Consensus       197 ~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~  276 (357)
T 4g56_B          197 FLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLA  276 (357)
T ss_dssp             EEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEE
T ss_pred             eeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEE
Confidence            8889999999999999988766554  46778999999997 5678888765 999999999999999999999999999


Q ss_pred             EecCC-CEEEEEECCCeEEEEECCCCceEEecccCCceEEEEEeC-CCCEEEEEECCCcEEEeC
Q 047260          723 FHPSY-STLLVVGGISSLELWNMAENKSMTIAAHENIISALAQSP-VTGMVASASHDSSVKLWK  784 (784)
Q Consensus       723 fspdg-~~L~s~s~dg~I~Iwdl~~~~~~~~~~h~~~V~slafsp-dg~~LaSgs~DG~V~IWd  784 (784)
                      |+|++ .+|++++.|++|+|||+.+++.+...+|.+.|++|+|+| ++.+|++|+.||.|++||
T Consensus       277 ~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~  340 (357)
T 4g56_B          277 YSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHH  340 (357)
T ss_dssp             ECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred             EcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEE
Confidence            99987 578899999999999999999998889999999999998 789999999999999996

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=2.5e-38  Score=346.59  Aligned_cols=277  Identities=15%  Similarity=0.219  Sum_probs=233.8

Q ss_pred             cCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCC-----------CceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeE
Q 047260          505 SRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDT-----------LQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSV  573 (784)
Q Consensus       505 ~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t-----------~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I  573 (784)
                      .|...|.+++|+|||++|++++ |+++++||...           .........|...|++++|+|++ .|++|+.||+|
T Consensus        28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v  105 (344)
T 4gqb_B           28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAV  105 (344)
T ss_dssp             SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEE
T ss_pred             cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEE
Confidence            4677899999999999999877 67788886321           11111122456789999999985 78899999999


Q ss_pred             EEEcCCCCccee---eeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCC-E
Q 047260          574 RLWDAANPNFCS---QAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIG-Q  646 (784)
Q Consensus       574 ~IWdl~~~~~~~---~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~-~  646 (784)
                      +|||+++++...   ....+|...|++++|+|++. +|++|+.|+.|++||+++.+++..+.   ..|.+++|++++. .
T Consensus       106 ~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~-~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~  184 (344)
T 4gqb_B          106 ELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT-QAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSV  184 (344)
T ss_dssp             EEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTE
T ss_pred             EEEeccCCCceeEeeccccCCCCCEEEEEECCCCC-EEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCc
Confidence            999999876322   23458999999999999987 78899999999999999988877654   6789999999985 6


Q ss_pred             EEEEECCCcEEEEECCCCeEEEEEe--CCCCCEEEEEEcCC-CCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEE
Q 047260          647 LLAAASDKVVSIFDIETDRQTHSLQ--GHAELVNYICWDTN-GDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCV  722 (784)
Q Consensus       647 Ll~~s~Dg~I~IwDl~t~~~i~~l~--~h~~~V~sl~~spd-g~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~  722 (784)
                      |++++.|+.|++||+++++.+..+.  .+...+.+++|+|+ +.+|++++.+ .|+|||+++++++.++.+|...|++++
T Consensus       185 l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~  264 (344)
T 4gqb_B          185 FLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLV  264 (344)
T ss_dssp             EEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEE
T ss_pred             eeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEE
Confidence            7889999999999999998888775  35668999999985 5688888865 999999999999999999999999999


Q ss_pred             EecCC-CEEEEEECCCeEEEEECCCCceEEecccCCceEEEEEeCCCC-EEEEEECCCcEEEeC
Q 047260          723 FHPSY-STLLVVGGISSLELWNMAENKSMTIAAHENIISALAQSPVTG-MVASASHDSSVKLWK  784 (784)
Q Consensus       723 fspdg-~~L~s~s~dg~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~-~LaSgs~DG~V~IWd  784 (784)
                      |+|++ .+|++++.|++|+|||+.+++++.+.+|.+.|++++|+|++. +|++|+.||+|++|+
T Consensus       265 fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~  328 (344)
T 4gqb_B          265 FSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHV  328 (344)
T ss_dssp             ECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred             EccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEE
Confidence            99998 578999999999999999999999999999999999999986 678999999999995

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.8e-38  Score=339.13  Aligned_cols=284  Identities=20%  Similarity=0.324  Sum_probs=235.4

Q ss_pred             eeEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC--ceeeec-CC-CCCCeEEEEEccCCCEEEEEeCCCe
Q 047260          497 FCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTL--QTESTP-ED-HKSVVTDVRFRPNSSQLATASVDKS  572 (784)
Q Consensus       497 ~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~--~~~~~l-~~-h~~~It~i~fspdg~~Latgs~Dg~  572 (784)
                      +..+..+.+|.+.|++++|+++  +||+|+.|++|+|||+.++  .....+ .. |...|++++|+|++++|++|+.|++
T Consensus         4 ~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~   81 (330)
T 2hes_X            4 INLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDST   81 (330)
T ss_dssp             CEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred             cccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCc
Confidence            4567889999999999999988  9999999999999999864  444555 34 9999999999999999999999999


Q ss_pred             EEEEcCCCC------cceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCC----CeeEEe---ecCCeeEEE
Q 047260          573 VRLWDAANP------NFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINP----FLCTHI---TKGGTAQVR  639 (784)
Q Consensus       573 I~IWdl~~~------~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~----~~~~~~---~~~~v~~v~  639 (784)
                      |+|||++..      ......+.+|...|.+++|+|++. +|++|+.|+.|++||++.    .+++..   +...+.+++
T Consensus        82 v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~-~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~  160 (330)
T 2hes_X           82 VSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY-YLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVI  160 (330)
T ss_dssp             EEEEEC-------CCCEEEEEEC----CEEEEEECTTSC-EEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEE
T ss_pred             EEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEE
Confidence            999998542      124566789999999999999987 888999999999999943    234433   456799999


Q ss_pred             EecCCCEEEEEECCCcEEEEECCCC--eEEEEEeCCCCCEEEEEEcCC--CCEEEEEeCC-eEEEEeCCCC--------c
Q 047260          640 FQPRIGQLLAAASDKVVSIFDIETD--RQTHSLQGHAELVNYICWDTN--GDYLASVSQN-LVKVWSMASG--------E  706 (784)
Q Consensus       640 fsp~~~~Ll~~s~Dg~I~IwDl~t~--~~i~~l~~h~~~V~sl~~spd--g~~Lasgsdd-~I~IwDl~t~--------~  706 (784)
                      |+|++..|++++.|+.|++||..++  +++..+.+|...|.+++|+|+  +.+|+++++| +|+|||+..+        .
T Consensus       161 ~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~  240 (330)
T 2hes_X          161 WHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWV  240 (330)
T ss_dssp             ECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEE
T ss_pred             ECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeE
Confidence            9999999999999999999999876  678889999999999999998  7789998866 9999998764        4


Q ss_pred             eEEEecc-CCCceEEEEEecCCCEEEEEECCCeEEEEECCCCce--E-E-ecccCC-ceEEEEEeC--CCCEEEEEECCC
Q 047260          707 CIQELSS-NGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKS--M-T-IAAHEN-IISALAQSP--VTGMVASASHDS  778 (784)
Q Consensus       707 ~i~~l~~-~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~--~-~-~~~h~~-~V~slafsp--dg~~LaSgs~DG  778 (784)
                      ++..+.. |...|.+++|++++ +|++++.||.|+|||..++..  . . ...|.. .|.+++|+|  ++.+|++|+.||
T Consensus       241 ~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg  319 (330)
T 2hes_X          241 CEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDG  319 (330)
T ss_dssp             EEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTS
T ss_pred             EeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCC
Confidence            4555654 88899999999765 799999999999999987742  2 2 356877 899999999  688999999999


Q ss_pred             cEEEeC
Q 047260          779 SVKLWK  784 (784)
Q Consensus       779 ~V~IWd  784 (784)
                      .|+|||
T Consensus       320 ~v~~W~  325 (330)
T 2hes_X          320 IVNFWS  325 (330)
T ss_dssp             EEEEEE
T ss_pred             cEEEEE
Confidence            999996

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2.6e-37  Score=364.07  Aligned_cols=314  Identities=16%  Similarity=0.245  Sum_probs=268.5

Q ss_pred             CcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCC
Q 047260          439 SLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSD  518 (784)
Q Consensus       439 ~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspd  518 (784)
                      .....+.+.++...++. ++ ++.+.+|+..+..                          ....+.+|.+.|++++|+||
T Consensus        19 g~~~~~~~spdg~~l~~-~~-~~~v~l~~~~~~~--------------------------~~~~~~~h~~~v~~~~~spd   70 (611)
T 1nr0_A           19 GTAVVLGNTPAGDKIQY-CN-GTSVYTVPVGSLT--------------------------DTEIYTEHSHQTTVAKTSPS   70 (611)
T ss_dssp             TCCCCCEECTTSSEEEE-EE-TTEEEEEETTCSS--------------------------CCEEECCCSSCEEEEEECTT
T ss_pred             CceeEEeeCCCCCEEEe-CC-CCEEEEecCCCcc--------------------------cCeEecCCCCceEEEEECCC
Confidence            33445666677666654 54 5788888663221                          34567889999999999999


Q ss_pred             CCEEEEEeCCCeEEEEECCCC--ceeeecCCCCCCeEEEEEccCCCEEEEEeCC----CeEEEEcCCCCcceeeeccCCC
Q 047260          519 GKLLASSGHDRKVVLWNMDTL--QTESTPEDHKSVVTDVRFRPNSSQLATASVD----KSVRLWDAANPNFCSQAYTGHS  592 (784)
Q Consensus       519 g~~Lasgs~Dg~I~IWd~~t~--~~~~~l~~h~~~It~i~fspdg~~Latgs~D----g~I~IWdl~~~~~~~~~~~~h~  592 (784)
                      |++||+|+.|++|+|||+.++  .....+..|.+.|.+++|+|++++|++++.+    +.|++||...   ....+.+|.
T Consensus        71 g~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~---~~~~l~gh~  147 (611)
T 1nr0_A           71 GYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT---SNGNLTGQA  147 (611)
T ss_dssp             SSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCC---BCBCCCCCS
T ss_pred             CcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCC---CcceecCCC
Confidence            999999999999999999754  3455778899999999999999999999875    4788998543   456678999


Q ss_pred             CCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEE
Q 047260          593 SPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHS  669 (784)
Q Consensus       593 ~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~  669 (784)
                      ..|.+++|+|++..+|++++.|+.|++||..+.++...+.   ..|.+++|+|++.+|++++.|+.|++||+.+++.+..
T Consensus       148 ~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~  227 (611)
T 1nr0_A          148 RAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGV  227 (611)
T ss_dssp             SCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             CCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeee
Confidence            9999999999998889999999999999999887766554   5789999999999999999999999999999998888


Q ss_pred             Ee-------CCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEE-------------------------------
Q 047260          670 LQ-------GHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQE-------------------------------  710 (784)
Q Consensus       670 l~-------~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~-------------------------------  710 (784)
                      +.       +|...|.+++|+|++++|++++.| +|+|||+.+++++.+                               
T Consensus       228 ~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~  307 (611)
T 1nr0_A          228 FEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFIN  307 (611)
T ss_dssp             CBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEE
T ss_pred             eccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEE
Confidence            84       799999999999999999999966 999999998766543                               


Q ss_pred             ------------eccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceEEe--cccCCceEEEEEeCCCCEEEEEEC
Q 047260          711 ------------LSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTI--AAHENIISALAQSPVTGMVASASH  776 (784)
Q Consensus       711 ------------l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~--~~h~~~V~slafspdg~~LaSgs~  776 (784)
                                  +.+|...|.+++|+|++++|++++.|++|++||+.++.....  ..|...|.+++|++++ .|++++.
T Consensus       308 ~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~-~l~s~s~  386 (611)
T 1nr0_A          308 FVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG-DLFTVSW  386 (611)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTS-CEEEEET
T ss_pred             EEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCC-cEEEEEc
Confidence                        346788999999999999999999999999999999887754  4799999999999765 7889999


Q ss_pred             CCcEEEeC
Q 047260          777 DSSVKLWK  784 (784)
Q Consensus       777 DG~V~IWd  784 (784)
                      |+.|++|+
T Consensus       387 d~~v~~w~  394 (611)
T 1nr0_A          387 DDHLKVVP  394 (611)
T ss_dssp             TTEEEEEC
T ss_pred             CCceEEee
Confidence            99999996

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-36  Score=328.99  Aligned_cols=285  Identities=16%  Similarity=0.280  Sum_probs=256.3

Q ss_pred             ceeEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEE
Q 047260          496 TFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRL  575 (784)
Q Consensus       496 ~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~I  575 (784)
                      .......+.+|.+.|++++|+|++++|++|+.||.|+|||+.+++.+..+..|...|++++|+|++++|++++.||.|++
T Consensus        21 ~~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~i  100 (369)
T 3zwl_B           21 SHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKL  100 (369)
T ss_dssp             CSEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEE
T ss_pred             cccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence            34456678999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCC-----CeEEEEeCCCCe--------------eEEeecC--C
Q 047260          576 WDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDND-----NEIQYWSINPFL--------------CTHITKG--G  634 (784)
Q Consensus       576 Wdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~d-----g~I~iwDl~~~~--------------~~~~~~~--~  634 (784)
                      ||+.+++ ....+. +...|.+++|+|++. ++++++.+     +.|++||++...              .+..+..  .
T Consensus       101 wd~~~~~-~~~~~~-~~~~v~~~~~~~~~~-~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (369)
T 3zwl_B          101 WDVSNGQ-CVATWK-SPVPVKRVEFSPCGN-YFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDA  177 (369)
T ss_dssp             EETTTCC-EEEEEE-CSSCEEEEEECTTSS-EEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCC
T ss_pred             EECCCCc-EEEEee-cCCCeEEEEEccCCC-EEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccc
Confidence            9999877 444444 888999999999987 56666667     999999986432              1122223  7


Q ss_pred             eeEEEEecCCCEEEEEECCCcEEEEECCC-CeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEec
Q 047260          635 TAQVRFQPRIGQLLAAASDKVVSIFDIET-DRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELS  712 (784)
Q Consensus       635 v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t-~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~  712 (784)
                      +.+++|+|++..|++++.||.|++||+++ .+.+..+..|...|.+++|+|++.+|++++.+ .|++||+++++++..+.
T Consensus       178 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~  257 (369)
T 3zwl_B          178 ATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE  257 (369)
T ss_dssp             EEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             eeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec
Confidence            89999999999999999999999999999 78899999999999999999999999999855 99999999999998887


Q ss_pred             cCCCceEEEEEecCCCEEEEEECCC--------------eEEEEECCCCceE-EecccCCceEEEEEeCCCCEEEEEECC
Q 047260          713 SNGNQFHSCVFHPSYSTLLVVGGIS--------------SLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHD  777 (784)
Q Consensus       713 ~~~~~I~sl~fspdg~~L~s~s~dg--------------~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg~~LaSgs~D  777 (784)
                       +...+.+++|+|++.++++++.++              .|++||+.+++.+ .+..|...|++++|+|++++|++++.|
T Consensus       258 -~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d  336 (369)
T 3zwl_B          258 -TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGED  336 (369)
T ss_dssp             -CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             -CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCC
Confidence             668899999999999999999988              8999999998877 677899999999999999999999999


Q ss_pred             CcEEEeC
Q 047260          778 SSVKLWK  784 (784)
Q Consensus       778 G~V~IWd  784 (784)
                      |.|+|||
T Consensus       337 g~v~iw~  343 (369)
T 3zwl_B          337 GFIRLHH  343 (369)
T ss_dssp             SEEEEEE
T ss_pred             CeEEEEE
Confidence            9999996

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-38  Score=352.01  Aligned_cols=319  Identities=15%  Similarity=0.210  Sum_probs=270.8

Q ss_pred             cccccccCCCceEecc----------ccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceE
Q 047260          442 SASNLLEDIDRFADVG----------SIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVT  511 (784)
Q Consensus       442 ss~~~~~~~~~ll~~g----------S~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~  511 (784)
                      .+..+.++...++.+|          +.|+.+++|+.......                       ..+.. ..|...|+
T Consensus        16 ~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~-----------------------~~~~~-~~~~~~v~   71 (416)
T 2pm9_A           16 ATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE-----------------------KPIAS-LQVDSKFN   71 (416)
T ss_dssp             CBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC-----------------------SCSCC-CCCSSCEE
T ss_pred             ceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCC-----------------------cEEEE-EecCCceE
Confidence            4455667666677777          88999999977443210                       01111 24888999


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCC----CceeeecCCCCCCeEEEEEccC-CCEEEEEeCCCeEEEEcCCCCc----
Q 047260          512 CCHFSSDGKLLASSGHDRKVVLWNMDT----LQTESTPEDHKSVVTDVRFRPN-SSQLATASVDKSVRLWDAANPN----  582 (784)
Q Consensus       512 ~l~fspdg~~Lasgs~Dg~I~IWd~~t----~~~~~~l~~h~~~It~i~fspd-g~~Latgs~Dg~I~IWdl~~~~----  582 (784)
                      +++|+|++++|++|+.||.|+|||+.+    .+.+..+..|...|++++|+|+ +++|++++.|+.|++||+.+..    
T Consensus        72 ~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~  151 (416)
T 2pm9_A           72 DLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPS  151 (416)
T ss_dssp             EEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTT
T ss_pred             EEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccc
Confidence            999999999999999999999999987    4588888999999999999998 8999999999999999998765    


Q ss_pred             --cee--eeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEee---------cCCeeEEEEecCC-CEEE
Q 047260          583 --FCS--QAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHIT---------KGGTAQVRFQPRI-GQLL  648 (784)
Q Consensus       583 --~~~--~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~---------~~~v~~v~fsp~~-~~Ll  648 (784)
                        ...  .....|...|.+++|+|++..++++++.|+.|++||+++.+.+..+         ...+.+++|+|++ ..++
T Consensus       152 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  231 (416)
T 2pm9_A          152 NYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVA  231 (416)
T ss_dssp             TCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEE
T ss_pred             cccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEE
Confidence              222  2346789999999999997779999999999999999988776655         3558999999997 5788


Q ss_pred             EEECCC---cEEEEECCCC-eEEEEEe-CCCCCEEEEEEcC-CCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEE
Q 047260          649 AAASDK---VVSIFDIETD-RQTHSLQ-GHAELVNYICWDT-NGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSC  721 (784)
Q Consensus       649 ~~s~Dg---~I~IwDl~t~-~~i~~l~-~h~~~V~sl~~sp-dg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl  721 (784)
                      +++.|+   .|++||++++ .++..+. +|...|.+++|+| ++.+|++++.+ .|++||+++++++..+..|...|.++
T Consensus       232 ~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~  311 (416)
T 2pm9_A          232 TATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKT  311 (416)
T ss_dssp             EEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCE
T ss_pred             EEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEE
Confidence            888888   9999999986 6777777 8999999999999 89999999855 99999999999999999999999999


Q ss_pred             EEecCC-CEEEEEECCCeEEEEECCCCceEE-ec-----------------------------------ccCCceEEEEE
Q 047260          722 VFHPSY-STLLVVGGISSLELWNMAENKSMT-IA-----------------------------------AHENIISALAQ  764 (784)
Q Consensus       722 ~fspdg-~~L~s~s~dg~I~Iwdl~~~~~~~-~~-----------------------------------~h~~~V~slaf  764 (784)
                      +|+|++ .+|++++.|+.|++||+.+..... ..                                   .|...|.+++|
T Consensus       312 ~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (416)
T 2pm9_A          312 KFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHW  391 (416)
T ss_dssp             EECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEE
T ss_pred             EECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEE
Confidence            999999 899999999999999998765321 10                                   16678889999


Q ss_pred             eCCCCEEEEEECCCcEEEeC
Q 047260          765 SPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       765 spdg~~LaSgs~DG~V~IWd  784 (784)
                      +|+|++|++++.||.|+|||
T Consensus       392 s~dg~~la~~~~d~~v~~w~  411 (416)
T 2pm9_A          392 AFGGKLVQITPDGKGVSITN  411 (416)
T ss_dssp             ETTTEEECBCTTSSCBCCBC
T ss_pred             eeCCeEEEEeCCCCeEEEEE
Confidence            99999999999999999997

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.5e-37  Score=347.88  Aligned_cols=280  Identities=21%  Similarity=0.395  Sum_probs=250.7

Q ss_pred             CCCcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEc
Q 047260          437 TGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFS  516 (784)
Q Consensus       437 ~~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fs  516 (784)
                      +...+.++.+.++.. ++.+|+.|++|++|+.....                          .+..+.+|.+.|++++|+
T Consensus       107 h~~~V~~~~~~p~~~-~l~s~s~Dg~i~vwd~~~~~--------------------------~~~~l~~h~~~V~~v~~~  159 (410)
T 1vyh_C          107 HRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGD--------------------------FERTLKGHTDSVQDISFD  159 (410)
T ss_dssp             CSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCC--------------------------CCEEECCCSSCEEEEEEC
T ss_pred             cCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCc--------------------------EEEEEeccCCcEEEEEEc
Confidence            334466666766654 55579999999999764322                          235678899999999999


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeE
Q 047260          517 SDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIM  596 (784)
Q Consensus       517 pdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~  596 (784)
                      |++++|++|+.|++|+|||+.+++.+..+.+|...|++++|+|++++|++|+.|++|++||+.++. +...+.+|...|.
T Consensus       160 ~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~-~~~~~~~h~~~v~  238 (410)
T 1vyh_C          160 HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY-CVKTFTGHREWVR  238 (410)
T ss_dssp             TTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC-EEEEEECCSSCEE
T ss_pred             CCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-EEEEEeCCCccEE
Confidence            999999999999999999999999999999999999999999999999999999999999999876 6778889999999


Q ss_pred             EEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEee---cCCeeEEEEecC--------------------CCEEEEEECC
Q 047260          597 SLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHIT---KGGTAQVRFQPR--------------------IGQLLAAASD  653 (784)
Q Consensus       597 sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~---~~~v~~v~fsp~--------------------~~~Ll~~s~D  653 (784)
                      ++.|++++. ++++|+.|+.|++||+++..+...+   ...+.+++|+|+                    +.+|++++.|
T Consensus       239 ~~~~~~~g~-~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D  317 (410)
T 1vyh_C          239 MVRPNQDGT-LIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRD  317 (410)
T ss_dssp             EEEECTTSS-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETT
T ss_pred             EEEECCCCC-EEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCC
Confidence            999999987 8889999999999999987776554   467899999996                    5689999999


Q ss_pred             CcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEE
Q 047260          654 KVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLV  732 (784)
Q Consensus       654 g~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s  732 (784)
                      +.|++||++++.++..+.+|...|.+++|+|++.+|+++++| .|+|||+.+++++.++..|...|.+++|+|++.+|++
T Consensus       318 ~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s  397 (410)
T 1vyh_C          318 KTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVT  397 (410)
T ss_dssp             SEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEE
T ss_pred             CeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEE
Confidence            999999999999999999999999999999999999999966 9999999999999999999999999999999999999


Q ss_pred             EECCCeEEEEECC
Q 047260          733 VGGISSLELWNMA  745 (784)
Q Consensus       733 ~s~dg~I~Iwdl~  745 (784)
                      ++.|++|+||+++
T Consensus       398 gs~D~~i~vW~~r  410 (410)
T 1vyh_C          398 GSVDQTVKVWECR  410 (410)
T ss_dssp             EETTSEEEEEC--
T ss_pred             EeCCCcEEEEeCC
Confidence            9999999999863

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=6.1e-37  Score=331.75  Aligned_cols=290  Identities=17%  Similarity=0.254  Sum_probs=256.6

Q ss_pred             eeecCCCCCCcccccccccC---CCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecC
Q 047260          430 MMNGSEGTGSLASASNLLED---IDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSR  506 (784)
Q Consensus       430 ~~~g~~~~~~~~ss~~~~~~---~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H  506 (784)
                      +.....++...++++.+.++   ...++.+|+.|++|++|+.....                        ......+.+|
T Consensus        24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~------------------------~~~~~~l~gh   79 (321)
T 3ow8_A           24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDER------------------------LDLQWSLEGH   79 (321)
T ss_dssp             EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTE------------------------EEEEEEECCC
T ss_pred             eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCC------------------------eeeeeeeccC
Confidence            33444566666777777654   34567789999999999874321                        1234567899


Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceee
Q 047260          507 NSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQ  586 (784)
Q Consensus       507 ~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~  586 (784)
                      ...|.+++|++++.++++++.|++|+|||+.+++.+..+..|...+.+++|+|++++|++++.||.|++||+++++ ...
T Consensus        80 ~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~-~~~  158 (321)
T 3ow8_A           80 QLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGK-KEY  158 (321)
T ss_dssp             SSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCS-EEE
T ss_pred             CCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCc-eeE
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999876 556


Q ss_pred             eccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEEEECCCcEEEEECCC
Q 047260          587 AYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLAAASDKVVSIFDIET  663 (784)
Q Consensus       587 ~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t  663 (784)
                      .+..|...|.+++|+|++. +|++++.|+.|++||+++.+.+..+.   ..+.+++|+|++.+|++++.|+.|++||+++
T Consensus       159 ~~~~~~~~v~~~~~spdg~-~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~  237 (321)
T 3ow8_A          159 SLDTRGKFILSIAYSPDGK-YLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQH  237 (321)
T ss_dssp             EEECSSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTT
T ss_pred             EecCCCceEEEEEECCCCC-EEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCC
Confidence            6778889999999999987 78889999999999999988876655   5789999999999999999999999999999


Q ss_pred             CeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEE
Q 047260          664 DRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELW  742 (784)
Q Consensus       664 ~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iw  742 (784)
                      ++.+..+.+|...|.+++|+|++.+|++++.| .|+|||+.+++++.++..|...|.+++|+|++.+|++++.|+.|+||
T Consensus       238 ~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vw  317 (321)
T 3ow8_A          238 ANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIY  317 (321)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred             cceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEE
Confidence            99999999999999999999999999999966 99999999999999999999999999999999999999999999999


Q ss_pred             ECC
Q 047260          743 NMA  745 (784)
Q Consensus       743 dl~  745 (784)
                      |+.
T Consensus       318 d~p  320 (321)
T 3ow8_A          318 DCP  320 (321)
T ss_dssp             ECC
T ss_pred             eCC
Confidence            963

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.2e-37  Score=340.89  Aligned_cols=328  Identities=14%  Similarity=0.203  Sum_probs=270.2

Q ss_pred             cccccccccCCCceEeccccCCcceeEEe----ecCCCCcc--eeccccCCCCccCCCCCCcceeEEeEeecCCCceEEE
Q 047260          440 LASASNLLEDIDRFADVGSIDENMESLLS----HDGGDGRE--LYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCC  513 (784)
Q Consensus       440 ~~ss~~~~~~~~~ll~~gS~D~~v~~~~~----~~~~~~r~--l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l  513 (784)
                      .+.+..+.++...++++|+.|+.+++|+.    ..+.....  ....+.    +        .+.......+|.+.|+++
T Consensus        47 ~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~----~--------~~~~~~~~~~~~~~v~~~  114 (425)
T 1r5m_A           47 NIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELR----H--------PFALSASSGKTTNQVTCL  114 (425)
T ss_dssp             CCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEE----C--------CCCCC------CBCEEEE
T ss_pred             ceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccc----c--------cccccccccCCCCceEEE
Confidence            45566777777647778999999999988    33220000  000000    0        000001223478899999


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCC
Q 047260          514 HFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSS  593 (784)
Q Consensus       514 ~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~  593 (784)
                      +|+|++++|++|+.||.|+||| .+++.+..+..|...|++++|+|++++|++++.|+.|++||+.++. ....+..+..
T Consensus       115 ~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~  192 (425)
T 1r5m_A          115 AWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGT-VMQHFELKET  192 (425)
T ss_dssp             EECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTE-EEEEECCC--
T ss_pred             EEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCc-EEEEeecccc
Confidence            9999999999999999999999 6678888999999999999999999999999999999999998876 5555666666


Q ss_pred             C---------------eEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEe---ecCCeeEEEEecCCCEEEEEECCCc
Q 047260          594 P---------------IMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHI---TKGGTAQVRFQPRIGQLLAAASDKV  655 (784)
Q Consensus       594 ~---------------V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~---~~~~v~~v~fsp~~~~Ll~~s~Dg~  655 (784)
                      .               +.+++|++++  .+++++.++.|++||++....+..   +...+.+++|+|++.+|++++.|+.
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~  270 (425)
T 1r5m_A          193 GGSSINAENHSGDGSLGVDVEWVDDD--KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGT  270 (425)
T ss_dssp             -------------CCCBSCCEEEETT--EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSC
T ss_pred             CccceeeccccCCcceeeEEEEcCCC--EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCE
Confidence            5               9999999875  578889999999999997655544   4578899999999999999999999


Q ss_pred             EEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEE
Q 047260          656 VSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVG  734 (784)
Q Consensus       656 I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s  734 (784)
                      |++||+++++.+..+..|...|.+++|+|++ +|++++.+ .|++||+++++++..+..|...|.+++|+|++.+|++++
T Consensus       271 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~  349 (425)
T 1r5m_A          271 LRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAF  349 (425)
T ss_dssp             EEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEE
T ss_pred             EEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEE
Confidence            9999999999999999999999999999999 77777755 999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEECCCCc--------------------eE-EecccCC--ceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          735 GISSLELWNMAENK--------------------SM-TIAAHEN--IISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       735 ~dg~I~Iwdl~~~~--------------------~~-~~~~h~~--~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      .||.|++||+.++.                    .+ .+..|..  .|++++|+|++++|++++.||.|+|||
T Consensus       350 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~  422 (425)
T 1r5m_A          350 MDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVA  422 (425)
T ss_dssp             TTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEE
T ss_pred             CCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEe
Confidence            99999999998877                    44 6677866  999999999999999999999999996

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=2.5e-36  Score=324.66  Aligned_cols=284  Identities=18%  Similarity=0.369  Sum_probs=246.1

Q ss_pred             eeEEeEeecCCCceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCc-----eeeecCCCCCCeEEEEEccCCCEEEEEeCC
Q 047260          497 FCEVGCIRSRNSKVTCCHFSSD-GKLLASSGHDRKVVLWNMDTLQ-----TESTPEDHKSVVTDVRFRPNSSQLATASVD  570 (784)
Q Consensus       497 ~~~i~~l~~H~~~V~~l~fspd-g~~Lasgs~Dg~I~IWd~~t~~-----~~~~l~~h~~~It~i~fspdg~~Latgs~D  570 (784)
                      +....+|++|.+.|++|+|+|+ +++||||+.|++|+|||+.+.+     ....+.+|...|++++|+|++++|++++.|
T Consensus        28 ~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d  107 (340)
T 4aow_A           28 MTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWD  107 (340)
T ss_dssp             EEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             eEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEccc
Confidence            3456689999999999999997 6899999999999999987643     456788999999999999999999999999


Q ss_pred             CeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEe----ecCCeeEEEEecCC--
Q 047260          571 KSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHI----TKGGTAQVRFQPRI--  644 (784)
Q Consensus       571 g~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~----~~~~v~~v~fsp~~--  644 (784)
                      +.|++|+..... .......+...+..+.+++++. ++++++.|+.+++||+........    +...+..++|++++  
T Consensus       108 ~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  185 (340)
T 4aow_A          108 GTLRLWDLTTGT-TTRRFVGHTKDVLSVAFSSDNR-QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSN  185 (340)
T ss_dssp             SEEEEEETTTTE-EEEEEECCSSCEEEEEECTTSS-CEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSS
T ss_pred             ccceEEeecccc-eeeeecCCCCceeEEEEeecCc-cceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCC
Confidence            999999998866 5555667788899999999876 677899999999999986554433    23677888888765  


Q ss_pred             CEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEE
Q 047260          645 GQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVF  723 (784)
Q Consensus       645 ~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~f  723 (784)
                      ..+++++.|+.|++||+++++.+..+.+|...|++++|+|++++|++++.| .|+|||+++.+++..+..+ ..|.++.|
T Consensus       186 ~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~  264 (340)
T 4aow_A          186 PIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALCF  264 (340)
T ss_dssp             CEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS-SCEEEEEE
T ss_pred             cEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC-ceEEeeec
Confidence            467788899999999999999999999999999999999999999999865 9999999999999888765 67999999


Q ss_pred             ecCCCEEEEEECCCeEEEEECCCCceE----------EecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          724 HPSYSTLLVVGGISSLELWNMAENKSM----------TIAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       724 spdg~~L~s~s~dg~I~Iwdl~~~~~~----------~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      +|++. +++++.|+.|++||+.++..+          ....|...|++++|+|++++|++|+.||.|+|||
T Consensus       265 ~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~  334 (340)
T 4aow_A          265 SPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ  334 (340)
T ss_dssp             CSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             CCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence            99875 667778999999999987654          2246889999999999999999999999999997

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=8.9e-36  Score=319.12  Aligned_cols=278  Identities=15%  Similarity=0.239  Sum_probs=248.9

Q ss_pred             eecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeec-----CCCCCCeEEEEEccCCCEEEEEeCCCeEEEEc
Q 047260          503 IRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTP-----EDHKSVVTDVRFRPNSSQLATASVDKSVRLWD  577 (784)
Q Consensus       503 l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l-----~~h~~~It~i~fspdg~~Latgs~Dg~I~IWd  577 (784)
                      ..+|.+.|++++|+|++++|++++ ||.|+|||+.++.....+     ..|...|++++|+|++++|++++.|+.|++||
T Consensus        47 ~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d  125 (337)
T 1gxr_A           47 TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWD  125 (337)
T ss_dssp             EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEE
T ss_pred             eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEE
Confidence            347999999999999999999998 999999999876543333     27999999999999999999999999999999


Q ss_pred             CCCCcc-eeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEee---cCCeeEEEEecCCCEEEEEECC
Q 047260          578 AANPNF-CSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHIT---KGGTAQVRFQPRIGQLLAAASD  653 (784)
Q Consensus       578 l~~~~~-~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~---~~~v~~v~fsp~~~~Ll~~s~D  653 (784)
                      +++++. ....+..|...|.+++|+|++. ++++++.|+.|++||+++.+....+   ...+.+++|+|++..+++++.|
T Consensus       126 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  204 (337)
T 1gxr_A          126 LAAPTPRIKAELTSSAPACYALAISPDSK-VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLD  204 (337)
T ss_dssp             CCCC--EEEEEEECSSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             CCCCCcceeeecccCCCceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecC
Confidence            988653 3456678999999999999876 7778889999999999988776654   4678999999999999999999


Q ss_pred             CcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEE
Q 047260          654 KVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLV  732 (784)
Q Consensus       654 g~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s  732 (784)
                      +.|++||+++++.+..+. +...+.+++|+|++.+|++++.+ .|++||+++++.. .+..|...|.+++|+|++++|++
T Consensus       205 g~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~  282 (337)
T 1gxr_A          205 NTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVS  282 (337)
T ss_dssp             SEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEE
T ss_pred             CcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCccceeEEEECCCCCEEEE
Confidence            999999999998888775 78899999999999999999855 9999999988754 67788899999999999999999


Q ss_pred             EECCCeEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          733 VGGISSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       733 ~s~dg~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      ++.||.|++||+.+++.+....|...|.+++|+|++++|++++.||.|++||
T Consensus       283 ~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~  334 (337)
T 1gxr_A          283 TGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE  334 (337)
T ss_dssp             EETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             ecCCCcEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEecCCCeEEEEE
Confidence            9999999999999999887778999999999999999999999999999996

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=6.3e-36  Score=346.96  Aligned_cols=281  Identities=28%  Similarity=0.469  Sum_probs=253.0

Q ss_pred             eEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEc
Q 047260          498 CEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWD  577 (784)
Q Consensus       498 ~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWd  577 (784)
                      ..+..+.+|...|++++|+|++++|++++.|+.|++||.. ++.+..+.+|...|++++|+|++++|++++.|++|++||
T Consensus       253 ~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~  331 (577)
T 2ymu_A          253 QLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN  331 (577)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             CEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC-CcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Confidence            4567788999999999999999999999999999999975 677788899999999999999999999999999999999


Q ss_pred             CCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCee--EEeecCCeeEEEEecCCCEEEEEECCCc
Q 047260          578 AANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLC--THITKGGTAQVRFQPRIGQLLAAASDKV  655 (784)
Q Consensus       578 l~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~--~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~  655 (784)
                      +...  ....+.+|...|.+++|+|++. ++++++.|+.|++||......  +..+...+.+++|+|++.+|++++.|+.
T Consensus       332 ~~~~--~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~  408 (577)
T 2ymu_A          332 RNGQ--HLQTLTGHSSSVWGVAFSPDGQ-TIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT  408 (577)
T ss_dssp             TTSC--EEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSE
T ss_pred             CCCC--eeEEEeCCCCCEEEEEECCCCC-EEEEEeCCCEEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCE
Confidence            8754  3556778999999999999987 778899999999999764322  2334578999999999999999999999


Q ss_pred             EEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEE
Q 047260          656 VSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVG  734 (784)
Q Consensus       656 I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s  734 (784)
                      |++||. +++.+..+.+|...|.+++|+|++++|++++.+ .|++||. +++.+..+..|...|.+++|+|++++|++++
T Consensus       409 v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~  486 (577)
T 2ymu_A          409 VKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASAS  486 (577)
T ss_dssp             EEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEE
T ss_pred             EEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence            999995 577888899999999999999999999999866 9999996 5778889999999999999999999999999


Q ss_pred             CCCeEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          735 GISSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       735 ~dg~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      .|+.|++||........+.+|...|++++|+|++++|++++.||.|+|||
T Consensus       487 ~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd  536 (577)
T 2ymu_A          487 DDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN  536 (577)
T ss_dssp             TTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             CCCEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEe
Confidence            99999999976555558889999999999999999999999999999997

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=8.9e-37  Score=336.34  Aligned_cols=284  Identities=15%  Similarity=0.189  Sum_probs=252.5

Q ss_pred             eEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc------eeeecCCCCCCeEEEEEccC----C---CEE
Q 047260          498 CEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQ------TESTPEDHKSVVTDVRFRPN----S---SQL  564 (784)
Q Consensus       498 ~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~------~~~~l~~h~~~It~i~fspd----g---~~L  564 (784)
                      .....+.+|.+.|++++|+|  ++|++|+.||.|+|||+.+++      .+..+..|...|++++|+|+    +   ++|
T Consensus         7 ~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l   84 (397)
T 1sq9_A            7 ATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV   84 (397)
T ss_dssp             EEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred             hhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEE
Confidence            45677889999999999998  799999999999999999887      77888899999999999999    9   999


Q ss_pred             EEEeCCCeEEEEcCCCCcc----eeeeccCC-----CCCeEEEEEc----CCCCcEEEEEeCCCeEEEEeCCC------C
Q 047260          565 ATASVDKSVRLWDAANPNF----CSQAYTGH-----SSPIMSLDFH----PKKTDLFCFCDNDNEIQYWSINP------F  625 (784)
Q Consensus       565 atgs~Dg~I~IWdl~~~~~----~~~~~~~h-----~~~V~sl~~s----p~~~~ll~sgs~dg~I~iwDl~~------~  625 (784)
                      ++++.||.|++||+.+...    ....+..|     ...|.+++|+    |++..+|++++.||.|++||++.      .
T Consensus        85 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  164 (397)
T 1sq9_A           85 ATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS  164 (397)
T ss_dssp             EEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred             EEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccc
Confidence            9999999999999987662    15666777     5899999999    88874388899999999999987      4


Q ss_pred             eeEE-----e----------ecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeC---C---CCCEEEEEEcC
Q 047260          626 LCTH-----I----------TKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQG---H---AELVNYICWDT  684 (784)
Q Consensus       626 ~~~~-----~----------~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~---h---~~~V~sl~~sp  684 (784)
                      ..+.     .          +...+.+++|+|++ .+++++.|+.|++||+++++.+..+..   |   ...|.+++|+|
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~  243 (397)
T 1sq9_A          165 LTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP  243 (397)
T ss_dssp             TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS
T ss_pred             ceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECC
Confidence            3332     2          35778999999999 999999999999999999999999998   8   99999999999


Q ss_pred             CCCEEEEEeC----CeEEEEeCCCCceEEEecc-------------CCCceEEEEEecCCCEEEEEECCCeEEEEECCCC
Q 047260          685 NGDYLASVSQ----NLVKVWSMASGECIQELSS-------------NGNQFHSCVFHPSYSTLLVVGGISSLELWNMAEN  747 (784)
Q Consensus       685 dg~~Lasgsd----d~I~IwDl~t~~~i~~l~~-------------~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~  747 (784)
                      ++.+|++++.    +.|++||+++++++..+..             |...|.+++|+|++.+|++++.|+.|++||+.++
T Consensus       244 ~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  323 (397)
T 1sq9_A          244 QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK  323 (397)
T ss_dssp             STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT
T ss_pred             CCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            9999999884    5999999999999999998             8999999999999999999999999999999998


Q ss_pred             ceE-Eec------cc---------------CCceEEEEEeCCC----------CEEEEEECCCcEEEeC
Q 047260          748 KSM-TIA------AH---------------ENIISALAQSPVT----------GMVASASHDSSVKLWK  784 (784)
Q Consensus       748 ~~~-~~~------~h---------------~~~V~slafspdg----------~~LaSgs~DG~V~IWd  784 (784)
                      +.+ .+.      .|               ...|++++|+|++          ++|++++.||.|+|||
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~  392 (397)
T 1sq9_A          324 ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR  392 (397)
T ss_dssp             EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred             ceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEE
Confidence            877 555      67               8999999999998          7999999999999996

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=6.5e-36  Score=322.86  Aligned_cols=291  Identities=18%  Similarity=0.267  Sum_probs=253.9

Q ss_pred             cCCCCCCcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEE
Q 047260          433 GSEGTGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTC  512 (784)
Q Consensus       433 g~~~~~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~  512 (784)
                      ...++...+.+..+.++...++.+|+.|+++++|+......                     .....+..+.+|...|.+
T Consensus        12 ~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~---------------------~~~~~~~~~~~h~~~v~~   70 (319)
T 3frx_A           12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQ---------------------KFGVPVRSFKGHSHIVQD   70 (319)
T ss_dssp             EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETT---------------------EEEEEEEEEECCSSCEEE
T ss_pred             EEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCc---------------------cccccceEEeCCcccEEE
Confidence            34566666777788777777888899999999998754320                     112356788999999999


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCC
Q 047260          513 CHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHS  592 (784)
Q Consensus       513 l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~  592 (784)
                      ++|+|++++|++|+.|++|+|||+.+++.+..+.+|...|.+++|+|++.+|++|+.|++|++||++..  +...+.+|.
T Consensus        71 ~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~--~~~~~~~h~  148 (319)
T 3frx_A           71 CTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ--CLATLLGHN  148 (319)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC--EEEEECCCS
T ss_pred             EEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--eEEEEeccC
Confidence            999999999999999999999999999999999999999999999999999999999999999999743  567778999


Q ss_pred             CCeEEEEEcCCC-----CcEEEEEeCCCeEEEEeCCCCeeEEee---cCCeeEEEEecCCCEEEEEECCCcEEEEECCCC
Q 047260          593 SPIMSLDFHPKK-----TDLFCFCDNDNEIQYWSINPFLCTHIT---KGGTAQVRFQPRIGQLLAAASDKVVSIFDIETD  664 (784)
Q Consensus       593 ~~V~sl~~sp~~-----~~ll~sgs~dg~I~iwDl~~~~~~~~~---~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~  664 (784)
                      ..|.++.|.|..     ..++++++.|+.|++||++.......+   ...+.+++|+|++.+|++++.|+.|++||++++
T Consensus       149 ~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~  228 (319)
T 3frx_A          149 DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK  228 (319)
T ss_dssp             SCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTT
T ss_pred             CcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence            999999999864     347899999999999999987766554   467999999999999999999999999999999


Q ss_pred             eEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEEEecc--------CCCceEEEEEecCCCEEEEEECC
Q 047260          665 RQTHSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELSS--------NGNQFHSCVFHPSYSTLLVVGGI  736 (784)
Q Consensus       665 ~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~~l~~--------~~~~I~sl~fspdg~~L~s~s~d  736 (784)
                      +.+..+.. ...|.+++|+|++.+|++++++.+++|++.....+..+..        +...+.+++|+|++++|++++.|
T Consensus       229 ~~~~~~~~-~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~D  307 (319)
T 3frx_A          229 KAMYTLSA-QDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTD  307 (319)
T ss_dssp             EEEEEEEC-CSCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETT
T ss_pred             cEEEEecC-CCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecC
Confidence            99988875 5689999999999999999999999999998887777643        34578999999999999999999


Q ss_pred             CeEEEEECCCC
Q 047260          737 SSLELWNMAEN  747 (784)
Q Consensus       737 g~I~Iwdl~~~  747 (784)
                      +.|+|||+.++
T Consensus       308 g~i~vWd~~t~  318 (319)
T 3frx_A          308 NVIRVWQVMTA  318 (319)
T ss_dssp             SCEEEEEEEEC
T ss_pred             ceEEEEEEeec
Confidence            99999998654

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=3.2e-36  Score=322.81  Aligned_cols=281  Identities=17%  Similarity=0.262  Sum_probs=244.6

Q ss_pred             CCcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcC
Q 047260          438 GSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSS  517 (784)
Q Consensus       438 ~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fsp  517 (784)
                      ...+.++.|.++...++ +|+.|+.|++|+....                          .++..+..|...|.+++|+|
T Consensus        13 ~~~V~~~~fsp~~~~l~-s~~~dg~v~lWd~~~~--------------------------~~~~~~~~~~~~v~~~~~~~   65 (304)
T 2ynn_A           13 SDRVKGIDFHPTEPWVL-TTLYSGRVELWNYETQ--------------------------VEVRSIQVTETPVRAGKFIA   65 (304)
T ss_dssp             CSCEEEEEECSSSSEEE-EEETTSEEEEEETTTT--------------------------EEEEEEECCSSCEEEEEEEG
T ss_pred             CCceEEEEECCCCCEEE-EEcCCCcEEEEECCCC--------------------------ceeEEeeccCCcEEEEEEeC
Confidence            34467777877765554 6889999999976321                          24567788999999999999


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEE
Q 047260          518 DGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMS  597 (784)
Q Consensus       518 dg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~s  597 (784)
                      ++++|++|+.|+.|+|||+.+++.+..+.+|...|++++|+|++++|++|+.|++|++||++++..+...+.+|...|.+
T Consensus        66 ~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~  145 (304)
T 2ynn_A           66 RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMC  145 (304)
T ss_dssp             GGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEE
T ss_pred             CCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999876677788899999999


Q ss_pred             EEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEe----ecCCeeEEEEec--CCCEEEEEECCCcEEEEECCCCeEEEEEe
Q 047260          598 LDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHI----TKGGTAQVRFQP--RIGQLLAAASDKVVSIFDIETDRQTHSLQ  671 (784)
Q Consensus       598 l~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~----~~~~v~~v~fsp--~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~  671 (784)
                      ++|+|.+..+|++|+.|+.|++||++.......    +...+..+.|.|  ++.+|++++.|+.|++||+++++++..+.
T Consensus       146 v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~  225 (304)
T 2ynn_A          146 VAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE  225 (304)
T ss_dssp             EEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             EEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeC
Confidence            999997777999999999999999986544332    235678888876  67799999999999999999999999999


Q ss_pred             CCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCCC--EEEEEECCCeEEEEECCC
Q 047260          672 GHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYS--TLLVVGGISSLELWNMAE  746 (784)
Q Consensus       672 ~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~--~L~s~s~dg~I~Iwdl~~  746 (784)
                      +|...|.+++|+|++.+|++++.| .|+|||+.+++++.++..+...+.+++|+|++.  ++++++ ++.+.+|++..
T Consensus       226 ~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~-~~g~~~~~~~~  302 (304)
T 2ynn_A          226 GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGF-DNGFTVLSLGN  302 (304)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEE-TTEEEEEECC-
T ss_pred             CCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEec-CCceEEEEecc
Confidence            999999999999999999999966 999999999999999999999999999999885  355554 55688888765

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=7.4e-36  Score=356.53  Aligned_cols=283  Identities=21%  Similarity=0.397  Sum_probs=245.2

Q ss_pred             eEEeEeecCCCceEEEEEcCCC-CEEEEEeCCCeEEEEECCCC-----ceeeecCCCCCCeEEEEEccCCCEEEEEeCCC
Q 047260          498 CEVGCIRSRNSKVTCCHFSSDG-KLLASSGHDRKVVLWNMDTL-----QTESTPEDHKSVVTDVRFRPNSSQLATASVDK  571 (784)
Q Consensus       498 ~~i~~l~~H~~~V~~l~fspdg-~~Lasgs~Dg~I~IWd~~t~-----~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg  571 (784)
                      .....+++|.+.|+||+|++++ ++|++|+.|++|+|||+.+.     .....+.+|...|++++|+|++++|++|+.||
T Consensus       373 ~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg  452 (694)
T 3dm0_A          373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDG  452 (694)
T ss_dssp             EEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             chhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCC
Confidence            4456789999999999999864 79999999999999999753     34567889999999999999999999999999


Q ss_pred             eEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEe------ecCCeeEEEEecCC-
Q 047260          572 SVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHI------TKGGTAQVRFQPRI-  644 (784)
Q Consensus       572 ~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~------~~~~v~~v~fsp~~-  644 (784)
                      +|+|||+.++. ....+.+|...|.+++|+|++. +|++++.|+.|++||+........      +...+.+++|+|++ 
T Consensus       453 ~v~vwd~~~~~-~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  530 (694)
T 3dm0_A          453 ELRLWDLAAGV-STRRFVGHTKDVLSVAFSLDNR-QIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTL  530 (694)
T ss_dssp             EEEEEETTTTE-EEEEEECCSSCEEEEEECTTSS-CEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSS
T ss_pred             cEEEEECCCCc-ceeEEeCCCCCEEEEEEeCCCC-EEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCC
Confidence            99999999866 6677889999999999999987 678899999999999876544333      33568999999987 


Q ss_pred             -CEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEE
Q 047260          645 -GQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCV  722 (784)
Q Consensus       645 -~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~  722 (784)
                       ..+++++.|+.|++||+++++....+.+|...|++++|+|++++|++++.| .|+|||+++++++..+..+ ..|.+++
T Consensus       531 ~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~  609 (694)
T 3dm0_A          531 QPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN-SVIHALC  609 (694)
T ss_dssp             SCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCS-SCEEEEE
T ss_pred             cceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCC-CcEEEEE
Confidence             579999999999999999999999999999999999999999999999965 9999999999998887654 6799999


Q ss_pred             EecCCCEEEEEECCCeEEEEECCCCceEE-ecc-------------------cCCceEEEEEeCCCCEEEEEECCCcEEE
Q 047260          723 FHPSYSTLLVVGGISSLELWNMAENKSMT-IAA-------------------HENIISALAQSPVTGMVASASHDSSVKL  782 (784)
Q Consensus       723 fspdg~~L~s~s~dg~I~Iwdl~~~~~~~-~~~-------------------h~~~V~slafspdg~~LaSgs~DG~V~I  782 (784)
                      |+|++.++++++ ++.|+|||+.++..+. +..                   +...|++++|+|++++|++|+.||.|+|
T Consensus       610 ~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~i  688 (694)
T 3dm0_A          610 FSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRV  688 (694)
T ss_dssp             ECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             EcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEE
Confidence            999988666654 5669999999987662 211                   1124789999999999999999999999


Q ss_pred             eC
Q 047260          783 WK  784 (784)
Q Consensus       783 Wd  784 (784)
                      ||
T Consensus       689 W~  690 (694)
T 3dm0_A          689 WG  690 (694)
T ss_dssp             EE
T ss_pred             Ee
Confidence            96

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=3e-36  Score=330.13  Aligned_cols=289  Identities=17%  Similarity=0.225  Sum_probs=230.9

Q ss_pred             ccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCCC
Q 047260          441 ASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGK  520 (784)
Q Consensus       441 ~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~  520 (784)
                      ..+..|.++...++ +++ |+++++|+..-.     .+..      ........    .......|...|.+++|+|++ 
T Consensus        33 v~~~~fs~dG~~l~-~~s-d~~~r~Wd~~~~-----~~~~------~~~~~~~~----~~~~~~~~~~~v~~~~~s~d~-   94 (344)
T 4gqb_B           33 LEAARYRSDGALLL-GAS-SLSGRCWAGSLW-----LFKD------PCAAPNEG----FCSAGVQTEAGVADLTWVGER-   94 (344)
T ss_dssp             EEEEEECTTSCEEE-EEE-CCSSSCCCEEEE-----EESS------GGGTTCGG----GCSEEEEESSCEEEEEEETTT-
T ss_pred             EEEEEECCCCCEEE-EEe-CCceEEeeceee-----eecc------ccccCCcc----eeeeeeccCCCEEEEEEeCCC-
Confidence            45566767665444 454 888898853210     0000      00001111    112223477889999999985 


Q ss_pred             EEEEEeCCCeEEEEECCCCceeee----cCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeE
Q 047260          521 LLASSGHDRKVVLWNMDTLQTEST----PEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIM  596 (784)
Q Consensus       521 ~Lasgs~Dg~I~IWd~~t~~~~~~----l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~  596 (784)
                      .|++|+.||+|+|||+.+++.+..    +.+|...|++|+|+|++++|++|+.|++|+|||+++++ +...+.+|...|.
T Consensus        95 ~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~-~~~~~~~h~~~V~  173 (344)
T 4gqb_B           95 GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQV-VLSSYRAHAAQVT  173 (344)
T ss_dssp             EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEE
T ss_pred             eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCc-EEEEEcCcCCceE
Confidence            688999999999999998876544    34899999999999999999999999999999999876 7788899999999


Q ss_pred             EEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec-----CCeeEEEEecCC-CEEEEEECCCcEEEEECCCCeEEEEE
Q 047260          597 SLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK-----GGTAQVRFQPRI-GQLLAAASDKVVSIFDIETDRQTHSL  670 (784)
Q Consensus       597 sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~-----~~v~~v~fsp~~-~~Ll~~s~Dg~I~IwDl~t~~~i~~l  670 (784)
                      +++|++++..+|++++.|+.|++||+++.+....+.     ..+.+++|+|++ .+|++++.|+.|++||+++++++..+
T Consensus       174 ~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~  253 (344)
T 4gqb_B          174 CVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSS  253 (344)
T ss_dssp             EEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEE
T ss_pred             EEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEE
Confidence            999999998899999999999999999887765543     357899999965 56778889999999999999999999


Q ss_pred             eCCCCCEEEEEEcCCC-CEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCCCE-EEEEECCCeEEEEECCCC
Q 047260          671 QGHAELVNYICWDTNG-DYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYST-LLVVGGISSLELWNMAEN  747 (784)
Q Consensus       671 ~~h~~~V~sl~~spdg-~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~-L~s~s~dg~I~Iwdl~~~  747 (784)
                      .+|...|++++|+|++ .+|+++++| +|+|||+.+++++ .+.+|...|++++|+|++.. |++++.|++|++|++.+.
T Consensus       254 ~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~  332 (344)
T 4gqb_B          254 AVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE  332 (344)
T ss_dssp             ECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred             cCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence            9999999999999998 578888865 9999999998765 56799999999999999875 668899999999999875


Q ss_pred             ce
Q 047260          748 KS  749 (784)
Q Consensus       748 ~~  749 (784)
                      ..
T Consensus       333 ~~  334 (344)
T 4gqb_B          333 PL  334 (344)
T ss_dssp             --
T ss_pred             CC
Confidence            43

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=4.2e-36  Score=327.11  Aligned_cols=280  Identities=15%  Similarity=0.215  Sum_probs=246.6

Q ss_pred             eecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--eeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCC
Q 047260          503 IRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQ--TESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAAN  580 (784)
Q Consensus       503 l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~--~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~  580 (784)
                      +..|.+.|++++|+|++++|++++.|+.|+|||+.+++  .+..+.+|...|++++|+|++++|++++.||.|++||+++
T Consensus         4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~   83 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG   83 (372)
T ss_dssp             EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred             ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence            45599999999999999999999999999999999887  8888889999999999999999999999999999999987


Q ss_pred             Ccce-eeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCee---EEe----ecCCeeEEEEecCCCEEEEEEC
Q 047260          581 PNFC-SQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLC---THI----TKGGTAQVRFQPRIGQLLAAAS  652 (784)
Q Consensus       581 ~~~~-~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~---~~~----~~~~v~~v~fsp~~~~Ll~~s~  652 (784)
                      ++.. ...+..|...|.+++|+|++. ++++++.|+.|++||++....   ...    +...+.+++|+|++.+|++++.
T Consensus        84 ~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  162 (372)
T 1k8k_C           84 RTWKPTLVILRINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC  162 (372)
T ss_dssp             TEEEEEEECCCCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET
T ss_pred             CeeeeeEEeecCCCceeEEEECCCCC-EEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcC
Confidence            6522 333467899999999999986 788889999999999987541   222    3467999999999999999999


Q ss_pred             CCcEEEEEC------------------CCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEecc
Q 047260          653 DKVVSIFDI------------------ETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSS  713 (784)
Q Consensus       653 Dg~I~IwDl------------------~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~  713 (784)
                      |+.|++||+                  ..++.+..+..|...|.+++|+|++.+|++++.+ .|++||+++++++..+..
T Consensus       163 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  242 (372)
T 1k8k_C          163 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLAS  242 (372)
T ss_dssp             TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEEC
T ss_pred             CCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEcc
Confidence            999999995                  4678888998999999999999999999999866 999999999999999999


Q ss_pred             CCCceEEEEEecCCCEEEEEECCCeEEEEECCC--Cce---------------------------------------EEe
Q 047260          714 NGNQFHSCVFHPSYSTLLVVGGISSLELWNMAE--NKS---------------------------------------MTI  752 (784)
Q Consensus       714 ~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~--~~~---------------------------------------~~~  752 (784)
                      |...|.+++|+|++.+|+++ .|+.|++|++.+  +..                                       ..+
T Consensus       243 ~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (372)
T 1k8k_C          243 ETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGL  321 (372)
T ss_dssp             SSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCC
T ss_pred             CCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccc
Confidence            99999999999999877766 999999999987  421                                       222


Q ss_pred             -cccCCceEEEEEe-CCC---CEEEEEECCCcEEEeC
Q 047260          753 -AAHENIISALAQS-PVT---GMVASASHDSSVKLWK  784 (784)
Q Consensus       753 -~~h~~~V~slafs-pdg---~~LaSgs~DG~V~IWd  784 (784)
                       .+|...|++++|+ +++   .+|++|+.||.|+|||
T Consensus       322 ~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~  358 (372)
T 1k8k_C          322 DSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD  358 (372)
T ss_dssp             SSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred             cccccCCcceeEEecCCCcceeeEEEecCCCceEEEE
Confidence             3899999999976 666   8999999999999996

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.1e-35  Score=330.64  Aligned_cols=312  Identities=13%  Similarity=0.204  Sum_probs=259.5

Q ss_pred             cccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCCCE
Q 047260          442 SASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKL  521 (784)
Q Consensus       442 ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~~  521 (784)
                      ....+.++...++ +++.|+.+++|+.......                          ..+..| ..+.+..|++++++
T Consensus        60 ~~~~~s~~g~~l~-~~~~d~~v~i~d~~~~~~~--------------------------~~~~~~-~~~~~~~~~~~~~~  111 (420)
T 3vl1_A           60 KGNTFEKVGSHLY-KARLDGHDFLFNTIIRDGS--------------------------KMLKRA-DYTAVDTAKLQMRR  111 (420)
T ss_dssp             TTCEEEEEETTEE-EEEETTEEEEEECCSEETT--------------------------TTSCSC-CEEEEEEECSSSCE
T ss_pred             cceeeeecCCeEE-EEEcCCcEEEEEeccccee--------------------------eEEecC-CceEEEEEecCCCE
Confidence            3566767766665 6889999999986433211                          111223 34555678999999


Q ss_pred             EEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEc
Q 047260          522 LASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFH  601 (784)
Q Consensus       522 Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~s  601 (784)
                      |++|+.||.|+|||+.+++....+..|...|++++|+|++++|++++.|+.|++||+.+++ ....+.+|...|.+++|+
T Consensus       112 l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~-~~~~~~~h~~~v~~~~~~  190 (420)
T 3vl1_A          112 FILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGS-NPRTLIGHRATVTDIAII  190 (420)
T ss_dssp             EEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-CCEEEECCSSCEEEEEEE
T ss_pred             EEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCc-CceEEcCCCCcEEEEEEc
Confidence            9999999999999999999999989999999999999999999999999999999999876 566778999999999999


Q ss_pred             CCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---------------------------CCeeEEEEecCCCEEEEEECCC
Q 047260          602 PKKTDLFCFCDNDNEIQYWSINPFLCTHITK---------------------------GGTAQVRFQPRIGQLLAAASDK  654 (784)
Q Consensus       602 p~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---------------------------~~v~~v~fsp~~~~Ll~~s~Dg  654 (784)
                      |++. +|++++.|+.|++||+++.+.+..+.                           ..+.+++|+|++.+|++++.||
T Consensus       191 ~~~~-~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  269 (420)
T 3vl1_A          191 DRGR-NVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSG  269 (420)
T ss_dssp             TTTT-EEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTS
T ss_pred             CCCC-EEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCC
Confidence            9977 77789999999999999888776654                           2334455678899999999999


Q ss_pred             cEEEEECCCCeEEEEEe-CCCCCEEEEEEcCCCC-EEEEEeCC-eEEEEeCCCCce-EEEecc-CCCceEEEEEecCCCE
Q 047260          655 VVSIFDIETDRQTHSLQ-GHAELVNYICWDTNGD-YLASVSQN-LVKVWSMASGEC-IQELSS-NGNQFHSCVFHPSYST  729 (784)
Q Consensus       655 ~I~IwDl~t~~~i~~l~-~h~~~V~sl~~spdg~-~Lasgsdd-~I~IwDl~t~~~-i~~l~~-~~~~I~sl~fspdg~~  729 (784)
                      .|++||+++++.+..+. .|...|.+++|+|++. +|++++.+ .|++||+++++. +..+.. +...|.++ +.+++.+
T Consensus       270 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~  348 (420)
T 3vl1_A          270 VITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNV-YFAAGAL  348 (420)
T ss_dssp             CEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEE-EEETTEE
T ss_pred             eEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEE-EeCCCCE
Confidence            99999999998777775 4788999999999998 99998865 999999999754 777776 55666666 5557889


Q ss_pred             EEEEECCCeEEEEECCCC----------ceEEecccCCceEEEEEeCCCC---EEEEEECCCcEEEeC
Q 047260          730 LLVVGGISSLELWNMAEN----------KSMTIAAHENIISALAQSPVTG---MVASASHDSSVKLWK  784 (784)
Q Consensus       730 L~s~s~dg~I~Iwdl~~~----------~~~~~~~h~~~V~slafspdg~---~LaSgs~DG~V~IWd  784 (784)
                      |++++.|+.|++||+...          ....+..|.+.|.+++|+|++.   .|++++.+|.+.+|+
T Consensus       349 l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~  416 (420)
T 3vl1_A          349 FVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYN  416 (420)
T ss_dssp             EEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEE
T ss_pred             EEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEe
Confidence            999999999999998873          2235668899999999999999   788888999999995

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=2.7e-35  Score=320.74  Aligned_cols=278  Identities=20%  Similarity=0.309  Sum_probs=242.7

Q ss_pred             CCCCcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEE
Q 047260          436 GTGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHF  515 (784)
Q Consensus       436 ~~~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~f  515 (784)
                      ++...+.+..+.++.. ++.+|+.|+.+++|+....                          ..+..+..|...|.+++|
T Consensus        53 gH~~~v~~~~~s~d~~-~l~s~s~Dg~v~iWd~~~~--------------------------~~~~~~~~~~~~v~~~~~  105 (340)
T 1got_B           53 GHLAKIYAMHWGTDSR-LLLSASQDGKLIIWDSYTT--------------------------NKVHAIPLRSSWVMTCAY  105 (340)
T ss_dssp             CCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTC--------------------------CEEEEEECSSSCEEEEEE
T ss_pred             CCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCC--------------------------CcceEeecCCccEEEEEE
Confidence            3444566677766654 4557999999999976322                          245567789999999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEECCCC----ceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCC
Q 047260          516 SSDGKLLASSGHDRKVVLWNMDTL----QTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGH  591 (784)
Q Consensus       516 spdg~~Lasgs~Dg~I~IWd~~t~----~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h  591 (784)
                      +|++++|++|+.|+.|+|||+.+.    .....+.+|...|.++.|++++. |++++.|++|++||++++. ....+.+|
T Consensus       106 s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~-~~~~~~~h  183 (340)
T 1got_B          106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQ-QTTTFTGH  183 (340)
T ss_dssp             CTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTE-EEEEECCC
T ss_pred             CCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCc-EEEEEcCC
Confidence            999999999999999999999865    35566789999999999998774 8999999999999999876 66778899


Q ss_pred             CCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEE
Q 047260          592 SSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTH  668 (784)
Q Consensus       592 ~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~  668 (784)
                      ...|.+++|+|++. ++++++.|+.|++||+++..+...+.   ..+.+++|+|++..|++++.|+.|++||+++++.+.
T Consensus       184 ~~~v~~~~~~~~~~-~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~  262 (340)
T 1got_B          184 TGDVMSLSLAPDTR-LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELM  262 (340)
T ss_dssp             SSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred             CCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEE
Confidence            99999999999876 88899999999999999887766554   678999999999999999999999999999998887


Q ss_pred             EEeC--CCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEE
Q 047260          669 SLQG--HAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWN  743 (784)
Q Consensus       669 ~l~~--h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwd  743 (784)
                      .+..  +...|.+++|+|++.+|++++++ .|+|||+.+++.+..+.+|...|.+++|+|++.+|++++.|+.|+|||
T Consensus       263 ~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          263 TYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            7753  33579999999999999999966 999999999999999999999999999999999999999999999997

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.3e-35  Score=309.56  Aligned_cols=280  Identities=15%  Similarity=0.242  Sum_probs=246.4

Q ss_pred             ceeEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEE
Q 047260          496 TFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRL  575 (784)
Q Consensus       496 ~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~I  575 (784)
                      .+..+..+.+|.+.|++++| +++++|++|+.||.|+|||+.+++....+..|...|.+++|+|++++|++++.||.|++
T Consensus         7 ~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~   85 (313)
T 3odt_A            7 GYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMING   85 (313)
T ss_dssp             CCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred             cHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEE
Confidence            34677889999999999999 99999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCCCc--ceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe-eEEeecCCeeEEEEec-CCCEEEEEE
Q 047260          576 WDAANPN--FCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFL-CTHITKGGTAQVRFQP-RIGQLLAAA  651 (784)
Q Consensus       576 Wdl~~~~--~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~-~~~~~~~~v~~v~fsp-~~~~Ll~~s  651 (784)
                      |++....  .....+.+|...|.++.|.  + .++++++.|+.|++||..... ....+...+.++.|.| ++..+++++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  162 (313)
T 3odt_A           86 VPLFATSGEDPLYTLIGHQGNVCSLSFQ--D-GVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENKFLTAS  162 (313)
T ss_dssp             EETTCCTTSCC-CEECCCSSCEEEEEEE--T-TEEEEEETTSEEEEEETTEEEEEEECCSSCEEEEEEEETTTTEEEEEE
T ss_pred             EEeeecCCCCcccchhhcccCEEEEEec--C-CEEEEEeCCCCEEEEcCCcEEEecccCCCceeEEEEccCCCCEEEEEE
Confidence            9987643  3456678899999999994  3 388899999999999933221 2233457888999988 889999999


Q ss_pred             CCCcEEEEECCCCeEEEEEeC-CCCCEEEEEEcCCCCEEEEEe-CCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCE
Q 047260          652 SDKVVSIFDIETDRQTHSLQG-HAELVNYICWDTNGDYLASVS-QNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYST  729 (784)
Q Consensus       652 ~Dg~I~IwDl~t~~~i~~l~~-h~~~V~sl~~spdg~~Lasgs-dd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~  729 (784)
                      .|+.|++||  ..+....+.. |...|.+++|+|++. +++++ ++.|++||+++++++..+..|...|.+++|+|++ .
T Consensus       163 ~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~  238 (313)
T 3odt_A          163 ADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-D  238 (313)
T ss_dssp             TTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-C
T ss_pred             CCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-C
Confidence            999999999  5567777777 899999999999999 55555 5599999999999999999999999999999999 6


Q ss_pred             EEEEECCCeEEEEECCCCceE-EecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          730 LLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       730 L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      |++++.||.|++||+.+++.. .+..|...|.+++|+|++. +++++.||.|+|||
T Consensus       239 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~  293 (313)
T 3odt_A          239 IVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFS  293 (313)
T ss_dssp             EEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEE
T ss_pred             EEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEe
Confidence            999999999999999999877 6678899999999999998 66799999999996

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=4.6e-36  Score=325.23  Aligned_cols=287  Identities=17%  Similarity=0.317  Sum_probs=245.1

Q ss_pred             cceeEEeEe-ecCCCceEEEEEcCC----CCEEEEEeCCCeEEEEECCCCceeeecCC-----CCCCeEEEEEccC----
Q 047260          495 FTFCEVGCI-RSRNSKVTCCHFSSD----GKLLASSGHDRKVVLWNMDTLQTESTPED-----HKSVVTDVRFRPN----  560 (784)
Q Consensus       495 ~~~~~i~~l-~~H~~~V~~l~fspd----g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~-----h~~~It~i~fspd----  560 (784)
                      +.|..+..+ .+|.+.|++++|+|+    ...+++++.++.|+|||+.+++.+..+..     |...|++++|+|+    
T Consensus         5 ~~~~~~~~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~   84 (366)
T 3k26_A            5 YSFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTS   84 (366)
T ss_dssp             CCCEEEEEEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTC
T ss_pred             eEEEEEEEeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCC
Confidence            344444344 489999999999984    44666677778999999998777666643     6688999999998    


Q ss_pred             CCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEee------cCC
Q 047260          561 SSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHIT------KGG  634 (784)
Q Consensus       561 g~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~------~~~  634 (784)
                      +.+|++|+.||.|++||+.+++ ....+.+|...|.+++|+|++..+|++++.||.|++||+++.+.+..+      ...
T Consensus        85 ~~~l~~~~~dg~i~v~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  163 (366)
T 3k26_A           85 HPLLAVAGSRGIIRIINPITMQ-CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDE  163 (366)
T ss_dssp             CEEEEEEETTCEEEEECTTTCC-EEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSC
T ss_pred             CCEEEEecCCCEEEEEEchhce-EeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCc
Confidence            6799999999999999999876 667788999999999999955558999999999999999988777654      468


Q ss_pred             eeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEE----------------------------eCCCCCEEEEEEcCCC
Q 047260          635 TAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSL----------------------------QGHAELVNYICWDTNG  686 (784)
Q Consensus       635 v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l----------------------------~~h~~~V~sl~~spdg  686 (784)
                      +.+++|+|++..|++++.|+.|++||+++++.+..+                            ..|...|.+++|+  +
T Consensus       164 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~  241 (366)
T 3k26_A          164 VLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--G  241 (366)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--T
T ss_pred             eeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--C
Confidence            999999999999999999999999999987544333                            2399999999998  7


Q ss_pred             CEEEEEeCC-eEEEEeCCCCce--------------EEEeccCCCceEEEEEecC--CCEEEEEECCCeEEEEECCCCce
Q 047260          687 DYLASVSQN-LVKVWSMASGEC--------------IQELSSNGNQFHSCVFHPS--YSTLLVVGGISSLELWNMAENKS  749 (784)
Q Consensus       687 ~~Lasgsdd-~I~IwDl~t~~~--------------i~~l~~~~~~I~sl~fspd--g~~L~s~s~dg~I~Iwdl~~~~~  749 (784)
                      .+|++++.+ .|++||+.++..              +..+..|...|.+++|+|+  +.+|++++.||.|++||+.+++.
T Consensus       242 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~  321 (366)
T 3k26_A          242 DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDP  321 (366)
T ss_dssp             TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSG
T ss_pred             CEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCC
Confidence            788888855 999999988644              7888889999999999999  99999999999999999998753


Q ss_pred             E-----Eeccc--CCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          750 M-----TIAAH--ENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       750 ~-----~~~~h--~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      .     .+..|  ...|++++|+|++++|++++.||.|+|||
T Consensus       322 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd  363 (366)
T 3k26_A          322 HKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWD  363 (366)
T ss_dssp             GGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             ccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEE
Confidence            2     56666  79999999999999999999999999997

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=3.7e-35  Score=323.11  Aligned_cols=282  Identities=15%  Similarity=0.255  Sum_probs=236.3

Q ss_pred             ceeEEeEeecCCCceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCceeeecC--CCCCCeEEEEEcc-CCCEEEEEeCCC
Q 047260          496 TFCEVGCIRSRNSKVTCCHFSSDG-KLLASSGHDRKVVLWNMDTLQTESTPE--DHKSVVTDVRFRP-NSSQLATASVDK  571 (784)
Q Consensus       496 ~~~~i~~l~~H~~~V~~l~fspdg-~~Lasgs~Dg~I~IWd~~t~~~~~~l~--~h~~~It~i~fsp-dg~~Latgs~Dg  571 (784)
                      .+..+..+.+|.+.|++++|+|++ ++|++|+.||.|+|||+.+++....+.  +|...|++++|+| ++++|++++.|+
T Consensus        62 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~  141 (383)
T 3ei3_B           62 SYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRG  141 (383)
T ss_dssp             TCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTT
T ss_pred             ccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCC
Confidence            345677889999999999999999 899999999999999999888777665  6999999999999 789999999999


Q ss_pred             eEEEEcCCCCcceeeecc---CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCee--EEeecCCeeEEEEecCCC-
Q 047260          572 SVRLWDAANPNFCSQAYT---GHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLC--THITKGGTAQVRFQPRIG-  645 (784)
Q Consensus       572 ~I~IWdl~~~~~~~~~~~---~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~--~~~~~~~v~~v~fsp~~~-  645 (784)
                      .|++||+.+.  ....+.   .|...|.+++|+|++. +|++++.|+.|++||++....  +..+...+.+++|+|++. 
T Consensus       142 ~i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~~  218 (383)
T 3ei3_B          142 ATTLRDFSGS--VIQVFAKTDSWDYWYCCVDVSVSRQ-MLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDW  218 (383)
T ss_dssp             EEEEEETTSC--EEEEEECCCCSSCCEEEEEEETTTT-EEEEEETTSEEEEEETTSCEEEEEECSSSCEEEEEECSSCTT
T ss_pred             EEEEEECCCC--ceEEEeccCCCCCCeEEEEECCCCC-EEEEECCCCCEEEEECCCCEEEEeccCCCcEEEEEECCCCCC
Confidence            9999999863  333333   3458899999999987 788899999999999964322  223457899999999999 


Q ss_pred             EEEEEECCCcEEEEECCC----CeEEEEEeCCCCCEEEEEEcC-CCCEEEEEeCC-eEEEEeCCCCceEEEeccCC----
Q 047260          646 QLLAAASDKVVSIFDIET----DRQTHSLQGHAELVNYICWDT-NGDYLASVSQN-LVKVWSMASGECIQELSSNG----  715 (784)
Q Consensus       646 ~Ll~~s~Dg~I~IwDl~t----~~~i~~l~~h~~~V~sl~~sp-dg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~----  715 (784)
                      .+++++.|+.|++||+++    +..+..+ +|...|.+++|+| ++.+|++++.+ .|+|||+++++++..+..|.    
T Consensus       219 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  297 (383)
T 3ei3_B          219 LMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQF  297 (383)
T ss_dssp             EEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCC
T ss_pred             EEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccccc
Confidence            899999999999999998    6666666 5999999999999 99999999865 99999999988776666442    


Q ss_pred             -------------CceEEEEEecCCCEEEEEECCCeEEEEECCCCceE-Eecc--cCCceEEEEEeCCCCEEEEEECCCc
Q 047260          716 -------------NQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM-TIAA--HENIISALAQSPVTGMVASASHDSS  779 (784)
Q Consensus       716 -------------~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~-~~~~--h~~~V~slafspdg~~LaSgs~DG~  779 (784)
                                   ..+..++|+|++.+  +++.|+.|+|||+.+++.+ .+..  |...+.+++|+|++++|++++ ||.
T Consensus       298 ~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~  374 (383)
T 3ei3_B          298 QHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFN  374 (383)
T ss_dssp             TTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTE
T ss_pred             ccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCc
Confidence                         23334555666655  6668999999999998887 4544  567888889999999999997 999


Q ss_pred             EEEeC
Q 047260          780 VKLWK  784 (784)
Q Consensus       780 V~IWd  784 (784)
                      |+|||
T Consensus       375 i~iw~  379 (383)
T 3ei3_B          375 ILIWN  379 (383)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            99996

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.3e-35  Score=326.17  Aligned_cols=285  Identities=17%  Similarity=0.242  Sum_probs=226.3

Q ss_pred             CCCcccccccccCCCceEecccc------CCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCce
Q 047260          437 TGSLASASNLLEDIDRFADVGSI------DENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKV  510 (784)
Q Consensus       437 ~~~~~ss~~~~~~~~~ll~~gS~------D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V  510 (784)
                      +...+.++.|.+|...++. +|.      |+.+++|.......                      .........+|...|
T Consensus        41 H~~~V~~v~fSpDG~~las-~s~d~~~~wd~~v~~~~~~~~~~----------------------~~~~~~~~~~~~~~V   97 (357)
T 4g56_B           41 MEVQIGAVRYRRDGALLLA-ASSLSSRTWGGSIWVFKDPEGAP----------------------NESLCTAGVQTEAGV   97 (357)
T ss_dssp             CCSEEEEEEECSSSCEEEE-EECSSSSSCCEEEEEESSCC-------------------------CGGGCSEEEECSSCE
T ss_pred             ccCCEEEEEECCCCCEEEE-EcCCCCccccCeEEEEECCCCCc----------------------ceeEecccCCCCCCE
Confidence            3344667778787766664 554      44555553322210                      011123345699999


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEECCCCceeee----cCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceee
Q 047260          511 TCCHFSSDGKLLASSGHDRKVVLWNMDTLQTEST----PEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQ  586 (784)
Q Consensus       511 ~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~----l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~  586 (784)
                      ++++|+|++. +++++.||+|+|||+.+++....    ..+|...|++++|+|++++|++|+.|++|+|||+++++ +..
T Consensus        98 ~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~-~~~  175 (357)
T 4g56_B           98 TDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKA-VLK  175 (357)
T ss_dssp             EEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTE-EEE
T ss_pred             EEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCc-EEE
Confidence            9999999986 45678899999999988765433    34799999999999999999999999999999999876 677


Q ss_pred             eccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEee-----cCCeeEEEEecCC-CEEEEEECCCcEEEEE
Q 047260          587 AYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHIT-----KGGTAQVRFQPRI-GQLLAAASDKVVSIFD  660 (784)
Q Consensus       587 ~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~-----~~~v~~v~fsp~~-~~Ll~~s~Dg~I~IwD  660 (784)
                      .+.+|...|.+++|++++..++++++.|+.|++||+++.+.....     ...+.+++|+|++ ..|++++.|+.|++||
T Consensus       176 ~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd  255 (357)
T 4g56_B          176 SYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVN  255 (357)
T ss_dssp             EECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEE
T ss_pred             EEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEE
Confidence            788999999999999999889999999999999999987655433     3568899999985 4677888999999999


Q ss_pred             CCCCeEEEEEeCCCCCEEEEEEcCCC-CEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEec-CCCEEEEEECCC
Q 047260          661 IETDRQTHSLQGHAELVNYICWDTNG-DYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHP-SYSTLLVVGGIS  737 (784)
Q Consensus       661 l~t~~~i~~l~~h~~~V~sl~~spdg-~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fsp-dg~~L~s~s~dg  737 (784)
                      +++++.+..+.+|...|++++|+|++ ++|+++++| +|+|||+++++++..+ +|...|++++|+| ++.+|++++.|+
T Consensus       256 ~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg  334 (357)
T 4g56_B          256 IKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDH  334 (357)
T ss_dssp             SSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTS
T ss_pred             CCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCC
Confidence            99999999999999999999999987 578888865 9999999999887665 7899999999998 789999999999


Q ss_pred             eEEEEECCCC
Q 047260          738 SLELWNMAEN  747 (784)
Q Consensus       738 ~I~Iwdl~~~  747 (784)
                      +|++|++...
T Consensus       335 ~v~iW~~~~~  344 (357)
T 4g56_B          335 KVLHHHLPSE  344 (357)
T ss_dssp             CEEEEECC--
T ss_pred             eEEEEECCCC
Confidence            9999999764

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.5e-35  Score=320.46  Aligned_cols=282  Identities=15%  Similarity=0.185  Sum_probs=238.1

Q ss_pred             eEeecCCCceEEEEEcCCCCEE-EEEeC---CCeEEEEECCCCceeeec-CCCCCCeEEEEEccC---CCEEEEEeCCCe
Q 047260          501 GCIRSRNSKVTCCHFSSDGKLL-ASSGH---DRKVVLWNMDTLQTESTP-EDHKSVVTDVRFRPN---SSQLATASVDKS  572 (784)
Q Consensus       501 ~~l~~H~~~V~~l~fspdg~~L-asgs~---Dg~I~IWd~~t~~~~~~l-~~h~~~It~i~fspd---g~~Latgs~Dg~  572 (784)
                      ..+.+|.+.|++++|+|++..| ++|+.   ||.|+|||+.+++..... .+|...|++++|+|+   +.+|++++.||.
T Consensus        12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~   91 (357)
T 3i2n_A           12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGN   91 (357)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred             hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence            3457799999999999999655 55655   899999999988765443 379999999999998   699999999999


Q ss_pred             EEEEcCCCCcceeeeccCCCCCeEEEEE------cCCCCcEEEEEeCCCeEEEEeCCCCe-eEEeec-------CCeeEE
Q 047260          573 VRLWDAANPNFCSQAYTGHSSPIMSLDF------HPKKTDLFCFCDNDNEIQYWSINPFL-CTHITK-------GGTAQV  638 (784)
Q Consensus       573 I~IWdl~~~~~~~~~~~~h~~~V~sl~~------sp~~~~ll~sgs~dg~I~iwDl~~~~-~~~~~~-------~~v~~v  638 (784)
                      |++||+.++......+.+|...|.+++|      +|++. +|++++.|+.|++||++... .+..+.       ..+.++
T Consensus        92 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~  170 (357)
T 3i2n_A           92 LHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAP-EIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTV  170 (357)
T ss_dssp             EEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCC-EEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEE
T ss_pred             EEEEeCCCCCccEEEEEecccceEEEeeccccccCCCcc-EEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEE
Confidence            9999999877567778899999999966      55665 78899999999999998765 344432       267778


Q ss_pred             E----EecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcC---CCCEEEEEeCC-eEEEEeCCCCceEEE
Q 047260          639 R----FQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDT---NGDYLASVSQN-LVKVWSMASGECIQE  710 (784)
Q Consensus       639 ~----fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~sp---dg~~Lasgsdd-~I~IwDl~t~~~i~~  710 (784)
                      .    |++++..+++++.|+.|++||+++++.... ..|...|.+++|+|   ++.+|++++.+ .|++||+++++++..
T Consensus       171 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  249 (357)
T 3i2n_A          171 AFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKG  249 (357)
T ss_dssp             EEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTE
T ss_pred             EEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccc
Confidence            7    678999999999999999999999987554 55889999999999   89999998855 999999988765544


Q ss_pred             ec-----cCCCceEEEEEecCCC-EEEEEECCCeEEEEECCCCc--------------------eEEecccCCceEEEEE
Q 047260          711 LS-----SNGNQFHSCVFHPSYS-TLLVVGGISSLELWNMAENK--------------------SMTIAAHENIISALAQ  764 (784)
Q Consensus       711 l~-----~~~~~I~sl~fspdg~-~L~s~s~dg~I~Iwdl~~~~--------------------~~~~~~h~~~V~slaf  764 (784)
                      +.     .|...|.+++|+|++. +|++++.||.|++||+..+.                    ...+..|...|++++|
T Consensus       250 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~  329 (357)
T 3i2n_A          250 FASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDW  329 (357)
T ss_dssp             EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEE
T ss_pred             eeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEE
Confidence            44     8999999999999998 89999999999999987542                    2256789999999999


Q ss_pred             eCCCCEEE-EEECCCcEEEeC
Q 047260          765 SPVTGMVA-SASHDSSVKLWK  784 (784)
Q Consensus       765 spdg~~La-Sgs~DG~V~IWd  784 (784)
                      +|++++|+ +++.||.|+|||
T Consensus       330 s~~~~~l~~s~~~d~~i~iw~  350 (357)
T 3i2n_A          330 SPDKRGLCVCSSFDQTVRVLI  350 (357)
T ss_dssp             CSSSTTEEEEEETTSEEEEEE
T ss_pred             cCCCCeEEEEecCCCcEEEEE
Confidence            99999888 899999999996

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1e-34  Score=316.30  Aligned_cols=292  Identities=16%  Similarity=0.227  Sum_probs=236.4

Q ss_pred             CCCCccccccc-----ccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCce
Q 047260          436 GTGSLASASNL-----LEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKV  510 (784)
Q Consensus       436 ~~~~~~ss~~~-----~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V  510 (784)
                      ++...+.++.+     .+....++.+|+.|++|++|+.......                   .........+.+|...|
T Consensus        19 gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~-------------------~~~~~~~~~l~~h~~~V   79 (343)
T 2xzm_R           19 GHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQN-------------------GYFGIPHKALTGHNHFV   79 (343)
T ss_dssp             CCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCS-------------------SBSEEEEEEECCCSSCE
T ss_pred             cchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcc-------------------cccccccchhccCCCce
Confidence            33344455544     3435566778999999999987543210                   11223566789999999


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcce-eeecc
Q 047260          511 TCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFC-SQAYT  589 (784)
Q Consensus       511 ~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~-~~~~~  589 (784)
                      ++++|+|++.+|++|+.|++|+|||+.+++.+..+.+|...|++++|+|++++|++++.|++|++||+...... .....
T Consensus        80 ~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~  159 (343)
T 2xzm_R           80 SDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKE  159 (343)
T ss_dssp             EEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTT
T ss_pred             EEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeeccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999743211 11223


Q ss_pred             CCCCCeEEEEEcCCCC---------cEEEEEeCCCeEEEEeCCCCee--EEeecCCeeEEEEecCCCEEEEEECCCcEEE
Q 047260          590 GHSSPIMSLDFHPKKT---------DLFCFCDNDNEIQYWSINPFLC--THITKGGTAQVRFQPRIGQLLAAASDKVVSI  658 (784)
Q Consensus       590 ~h~~~V~sl~~sp~~~---------~ll~sgs~dg~I~iwDl~~~~~--~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~I  658 (784)
                      +|...|.+++|+|++.         .++++++.|+.|++||.+....  ...+...+.+++|+|++.+|++++.|+.|++
T Consensus       160 ~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~i  239 (343)
T 2xzm_R          160 NHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLI  239 (343)
T ss_dssp             SCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEE
T ss_pred             CCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEE
Confidence            7889999999999863         4889999999999999653222  2335578999999999999999999999999


Q ss_pred             EECCC-CeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEE--Eec-----------cCCCceEEEEEe
Q 047260          659 FDIET-DRQTHSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQ--ELS-----------SNGNQFHSCVFH  724 (784)
Q Consensus       659 wDl~t-~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~--~l~-----------~~~~~I~sl~fs  724 (784)
                      ||++. ......+. +...|.+++|+|++.+++++.++.|++||+.+++.+.  .+.           +|...|.+++|+
T Consensus       240 wd~~~~~~~~~~~~-~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  318 (343)
T 2xzm_R          240 WDILNLTYPQREFD-AGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWN  318 (343)
T ss_dssp             EESSCCSSCSEEEE-CSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEEC
T ss_pred             EECCCCcccceeec-CCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEEC
Confidence            99954 44444443 5567999999999999998888899999998876433  443           567789999999


Q ss_pred             cCCCEEEEEECCCeEEEEECCCC
Q 047260          725 PSYSTLLVVGGISSLELWNMAEN  747 (784)
Q Consensus       725 pdg~~L~s~s~dg~I~Iwdl~~~  747 (784)
                      |++.+|++++.||.|++|++.++
T Consensus       319 p~g~~l~sg~~Dg~v~~w~~~~g  341 (343)
T 2xzm_R          319 ALGKKLFAGFTDGVIRTFSFETS  341 (343)
T ss_dssp             SSSCCEEEEETTSEEEEEEEEEE
T ss_pred             CCCCeEEEecCCceEEEEEEEcc
Confidence            99999999999999999998654

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-34  Score=320.89  Aligned_cols=277  Identities=15%  Similarity=0.217  Sum_probs=244.9

Q ss_pred             eecCCCceEEEEEcCCCC-EEEEEeCCCeEEEEEC----CCCc------eeeecCC----------CCCCeEEEEEccCC
Q 047260          503 IRSRNSKVTCCHFSSDGK-LLASSGHDRKVVLWNM----DTLQ------TESTPED----------HKSVVTDVRFRPNS  561 (784)
Q Consensus       503 l~~H~~~V~~l~fspdg~-~Lasgs~Dg~I~IWd~----~t~~------~~~~l~~----------h~~~It~i~fspdg  561 (784)
                      ...|.+.|++++|+|+++ +||+|+.||.|+|||+    .+++      ....+..          |...|++++|+|++
T Consensus        41 ~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  120 (425)
T 1r5m_A           41 EIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDG  120 (425)
T ss_dssp             EEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTS
T ss_pred             eeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCC
Confidence            455779999999999999 9999999999999999    8877      4444443          68899999999999


Q ss_pred             CEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecC---C----
Q 047260          562 SQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKG---G----  634 (784)
Q Consensus       562 ~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~---~----  634 (784)
                      ++|++++.||.|++||. ++. ....+..|...|.+++|+|++. +|++++.|+.|++||+++...+..+..   .    
T Consensus       121 ~~l~~~~~dg~i~i~~~-~~~-~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  197 (425)
T 1r5m_A          121 NSIVTGVENGELRLWNK-TGA-LLNVLNFHRAPIVSVKWNKDGT-HIISMDVENVTILWNVISGTVMQHFELKETGGSSI  197 (425)
T ss_dssp             SEEEEEETTSCEEEEET-TSC-EEEEECCCCSCEEEEEECTTSS-EEEEEETTCCEEEEETTTTEEEEEECCC-------
T ss_pred             CEEEEEeCCCeEEEEeC-CCC-eeeeccCCCccEEEEEECCCCC-EEEEEecCCeEEEEECCCCcEEEEeeccccCccce
Confidence            99999999999999993 333 6677889999999999999987 677888999999999998877766542   2    


Q ss_pred             -----------eeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeC
Q 047260          635 -----------TAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSM  702 (784)
Q Consensus       635 -----------v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl  702 (784)
                                 +.++.|+++ ..+++++.++.|++||+++++.+..+..|...|.+++|+|++.+|++++.+ .|++||+
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~  276 (425)
T 1r5m_A          198 NAENHSGDGSLGVDVEWVDD-DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHG  276 (425)
T ss_dssp             --------CCCBSCCEEEET-TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECS
T ss_pred             eeccccCCcceeeEEEEcCC-CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEEC
Confidence                       778899987 568899999999999999999999999999999999999999999999955 9999999


Q ss_pred             CCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE-EecccCCceEEEEEeCCCCEEEEEECCCcEE
Q 047260          703 ASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVK  781 (784)
Q Consensus       703 ~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg~~LaSgs~DG~V~  781 (784)
                      ++++++..+..|...|.+++|+|++ ++++++.|+.|++||+.+++.+ .+..|...|.+++|+|++++|++++.||.|+
T Consensus       277 ~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~  355 (425)
T 1r5m_A          277 GNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVN  355 (425)
T ss_dssp             SSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             CCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEE
Confidence            9999999999999999999999999 9999999999999999998877 5668899999999999999999999999999


Q ss_pred             EeC
Q 047260          782 LWK  784 (784)
Q Consensus       782 IWd  784 (784)
                      |||
T Consensus       356 i~~  358 (425)
T 1r5m_A          356 VYD  358 (425)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            996

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=7.5e-34  Score=305.37  Aligned_cols=293  Identities=18%  Similarity=0.283  Sum_probs=257.9

Q ss_pred             CCCCCCcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEE
Q 047260          434 SEGTGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCC  513 (784)
Q Consensus       434 ~~~~~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l  513 (784)
                      ..|+...+.++.+.++..+++.+|+.|++|++|+.....                     .........+.+|...|+++
T Consensus        34 L~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~---------------------~~~~~~~~~l~~h~~~V~~~   92 (340)
T 4aow_A           34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDE---------------------TNYGIPQRALRGHSHFVSDV   92 (340)
T ss_dssp             ECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSS---------------------SCSEEEEEEECCCSSCEEEE
T ss_pred             ECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC---------------------cccceeeEEEeCCCCCEEEE
Confidence            457777788999988877888889999999999875432                     11223567789999999999


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCC
Q 047260          514 HFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSS  593 (784)
Q Consensus       514 ~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~  593 (784)
                      +|+|++++|++++.|+.|++|+............+...+..+.+++++.+|++++.|+.+++||+...........+|..
T Consensus        93 ~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~  172 (340)
T 4aow_A           93 VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSE  172 (340)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSS
T ss_pred             EECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccC
Confidence            99999999999999999999999999998888899999999999999999999999999999999887666667788999


Q ss_pred             CeEEEEEcCCCC-cEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEE
Q 047260          594 PIMSLDFHPKKT-DLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHS  669 (784)
Q Consensus       594 ~V~sl~~sp~~~-~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~  669 (784)
                      .|.+++|++++. .++++++.|+.|++||+++......+.   ..+.+++|+|++.+|++++.|+.|++||+++.+.+..
T Consensus       173 ~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~  252 (340)
T 4aow_A          173 WVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYT  252 (340)
T ss_dssp             CEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEE
T ss_pred             cccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeee
Confidence            999999998764 467889999999999999988776654   6789999999999999999999999999999999988


Q ss_pred             EeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEEEec---------cCCCceEEEEEecCCCEEEEEECCCeEE
Q 047260          670 LQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELS---------SNGNQFHSCVFHPSYSTLLVVGGISSLE  740 (784)
Q Consensus       670 l~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~~l~---------~~~~~I~sl~fspdg~~L~s~s~dg~I~  740 (784)
                      +.. ...|.+++|+|++.+++++.++.|+|||++++.++..+.         .|...|.+++|+|++++|++++.||.|+
T Consensus       253 ~~~-~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~  331 (340)
T 4aow_A          253 LDG-GDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVR  331 (340)
T ss_dssp             EEC-SSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             ecC-CceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEE
Confidence            874 568999999999999988888899999999988776664         5678899999999999999999999999


Q ss_pred             EEECCCCc
Q 047260          741 LWNMAENK  748 (784)
Q Consensus       741 Iwdl~~~~  748 (784)
                      |||+.+|+
T Consensus       332 iW~~~tGt  339 (340)
T 4aow_A          332 VWQVTIGT  339 (340)
T ss_dssp             EEEEEC--
T ss_pred             EEeCCCcC
Confidence            99998875

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=2.2e-34  Score=315.88  Aligned_cols=280  Identities=18%  Similarity=0.303  Sum_probs=243.5

Q ss_pred             CCCCcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEE
Q 047260          436 GTGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHF  515 (784)
Q Consensus       436 ~~~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~f  515 (784)
                      ++...+.+..+.++.. ++.+|+.|+++++|+....                          .....+..|...|.+++|
T Consensus        62 gH~~~V~~~~~s~d~~-~l~s~s~Dg~v~vWd~~~~--------------------------~~~~~~~~~~~~v~~~~~  114 (354)
T 2pbi_B           62 GHGNKVLCMDWCKDKR-RIVSSSQDGKVIVWDSFTT--------------------------NKEHAVTMPCTWVMACAY  114 (354)
T ss_dssp             CCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTC--------------------------CEEEEEECSSSCCCEEEE
T ss_pred             CCCCeEEEEEECCCCC-EEEEEeCCCeEEEEECCCC--------------------------CcceEEecCCCCEEEEEE
Confidence            4445567777777665 4557999999999975322                          234456678899999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEECCCC------ceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeecc
Q 047260          516 SSDGKLLASSGHDRKVVLWNMDTL------QTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYT  589 (784)
Q Consensus       516 spdg~~Lasgs~Dg~I~IWd~~t~------~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~  589 (784)
                      +|+|.+|++|+.|+.|++|++...      .....+..|...|.+++|+|++..|++++.|++|++||+++++ +...+.
T Consensus       115 sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~-~~~~~~  193 (354)
T 2pbi_B          115 APSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQ-LLQSFH  193 (354)
T ss_dssp             CTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC-EEEEEE
T ss_pred             CCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCe-EEEEEc
Confidence            999999999999999999998643      3345566899999999999999999999999999999999876 677888


Q ss_pred             CCCCCeEEEEEcCCC-CcEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEEEECCCcEEEEECCCCe
Q 047260          590 GHSSPIMSLDFHPKK-TDLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLAAASDKVVSIFDIETDR  665 (784)
Q Consensus       590 ~h~~~V~sl~~sp~~-~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~  665 (784)
                      +|...|.+++|+|+. ..+|++|+.|+.|++||+++..++..+.   ..+.+++|+|++..|++++.|+.|++||++.++
T Consensus       194 ~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~  273 (354)
T 2pbi_B          194 GHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADR  273 (354)
T ss_dssp             CCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred             CCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Confidence            999999999999863 3589999999999999999988776654   678999999999999999999999999999998


Q ss_pred             EEEEEeCC--CCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEE
Q 047260          666 QTHSLQGH--AELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELW  742 (784)
Q Consensus       666 ~i~~l~~h--~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iw  742 (784)
                      .+..+..+  ...+.+++|+|++.+|++++.+ .|+|||+.+++.+..+.+|...|.+++|+|++.+|++++.|++|+||
T Consensus       274 ~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW  353 (354)
T 2pbi_B          274 EVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW  353 (354)
T ss_dssp             EEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred             EEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEec
Confidence            87777643  3478999999999999999966 99999999999999999999999999999999999999999999999


Q ss_pred             E
Q 047260          743 N  743 (784)
Q Consensus       743 d  743 (784)
                      +
T Consensus       354 ~  354 (354)
T 2pbi_B          354 A  354 (354)
T ss_dssp             C
T ss_pred             C
Confidence            6

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=5.4e-34  Score=331.93  Aligned_cols=339  Identities=14%  Similarity=0.219  Sum_probs=265.0

Q ss_pred             CCCCc-cccccccc--CCCceEeccccCCcceeEEeecC---------------------------CCCcceeccccC--
Q 047260          436 GTGSL-ASASNLLE--DIDRFADVGSIDENMESLLSHDG---------------------------GDGRELYGTLKH--  483 (784)
Q Consensus       436 ~~~~~-~ss~~~~~--~~~~ll~~gS~D~~v~~~~~~~~---------------------------~~~r~l~~~~~~--  483 (784)
                      ++... +.+..+.+  +.. ++.+|+.|+.+++|+...+                           .+++.++.....  
T Consensus        61 ~h~~~~v~~~~~sp~~~~~-~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~  139 (615)
T 1pgu_A           61 GHGSSVVTTVKFSPIKGSQ-YLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRD  139 (615)
T ss_dssp             TTTTSCEEEEEECSSTTCC-EEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSS
T ss_pred             cCCCceEEEEEECcCCCCC-EEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCC
Confidence            34444 66677777  554 5557889999999998532                           111111111110  


Q ss_pred             --CCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCCC-EEEEEeCCCeEEEEECCCCceeeecCCCCC---CeEEEEE
Q 047260          484 --SPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGK-LLASSGHDRKVVLWNMDTLQTESTPEDHKS---VVTDVRF  557 (784)
Q Consensus       484 --~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~-~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~---~It~i~f  557 (784)
                        .....|+     ....+..+.+|...|++++|+|+++ +|++++.|+.|++||+.+++.+..+..|..   .|++++|
T Consensus       140 ~~~~v~~~d-----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~  214 (615)
T 1pgu_A          140 NFGVFISWD-----SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEF  214 (615)
T ss_dssp             CSEEEEETT-----TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEE
T ss_pred             CccEEEEEE-----CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEE
Confidence              0111111     1235677889999999999999998 899999999999999999999999999999   9999999


Q ss_pred             ccC-CCEEEEEeCCCeEEEEcCCCCcceeeec-c---CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec
Q 047260          558 RPN-SSQLATASVDKSVRLWDAANPNFCSQAY-T---GHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK  632 (784)
Q Consensus       558 spd-g~~Latgs~Dg~I~IWdl~~~~~~~~~~-~---~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~  632 (784)
                      +|+ +++|++++.||.|++||+.+++ ....+ .   .|...|.+++|+ ++. ++++++.|+.|++||+++.+.+..+.
T Consensus       215 ~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~v~~~~~~-~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~  291 (615)
T 1pgu_A          215 SPDSGEFVITVGSDRKISCFDGKSGE-FLKYIEDDQEPVQGGIFALSWL-DSQ-KFATVGADATIRVWDVTTSKCVQKWT  291 (615)
T ss_dssp             CSTTCCEEEEEETTCCEEEEETTTCC-EEEECCBTTBCCCSCEEEEEES-SSS-EEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             CCCCCCEEEEEeCCCeEEEEECCCCC-EeEEecccccccCCceEEEEEc-CCC-EEEEEcCCCcEEEEECCCCcEEEEEc
Confidence            999 9999999999999999999877 44455 5   899999999999 654 78889999999999998654433222


Q ss_pred             C------------------------------------------------C------------------------------
Q 047260          633 G------------------------------------------------G------------------------------  634 (784)
Q Consensus       633 ~------------------------------------------------~------------------------------  634 (784)
                      .                                                .                              
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~  371 (615)
T 1pgu_A          292 LDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDH  371 (615)
T ss_dssp             CCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCC
T ss_pred             CCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcc
Confidence            1                                                1                              


Q ss_pred             ---eeEEEE----------------------------------ecC----------------------------------
Q 047260          635 ---TAQVRF----------------------------------QPR----------------------------------  643 (784)
Q Consensus       635 ---v~~v~f----------------------------------sp~----------------------------------  643 (784)
                         +.+++|                                  +|+                                  
T Consensus       372 ~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  451 (615)
T 1pgu_A          372 SNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSA  451 (615)
T ss_dssp             CSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEE
T ss_pred             cCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceE
Confidence               111111                                  000                                  


Q ss_pred             ----CCEEEEEEC-CCcEEEEECCCCeEE-EEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEecc-CC
Q 047260          644 ----IGQLLAAAS-DKVVSIFDIETDRQT-HSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSS-NG  715 (784)
Q Consensus       644 ----~~~Ll~~s~-Dg~I~IwDl~t~~~i-~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~-~~  715 (784)
                          +..+++++. |+.|++||+.+++.. ..+..|...|.+++|+|++++|++++.+ .|+|||+.+++++..+.. |.
T Consensus       452 ~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~  531 (615)
T 1pgu_A          452 VSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRT  531 (615)
T ss_dssp             EEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCS
T ss_pred             EEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCC
Confidence                334455555 666666666655444 4556788999999999999999999865 999999999999999988 99


Q ss_pred             CceEEEEEec----------CCCEEEEEECCCeEEEEECCCC-ceE-EecccCCceEEEEEeCCCCEEEEEECCCcEEEe
Q 047260          716 NQFHSCVFHP----------SYSTLLVVGGISSLELWNMAEN-KSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLW  783 (784)
Q Consensus       716 ~~I~sl~fsp----------dg~~L~s~s~dg~I~Iwdl~~~-~~~-~~~~h~~~V~slafspdg~~LaSgs~DG~V~IW  783 (784)
                      ..|.+++|+|          ++.+|++++.|+.|++||+.++ +.+ .+.+|...|++++|+|++. |++++.||.|+||
T Consensus       532 ~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw  610 (615)
T 1pgu_A          532 SKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRW  610 (615)
T ss_dssp             SCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEE
T ss_pred             CceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEE
Confidence            9999999999          9999999999999999999987 444 6778999999999999999 9999999999999


Q ss_pred             C
Q 047260          784 K  784 (784)
Q Consensus       784 d  784 (784)
                      |
T Consensus       611 ~  611 (615)
T 1pgu_A          611 N  611 (615)
T ss_dssp             E
T ss_pred             e
Confidence            6

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=4.5e-34  Score=305.71  Aligned_cols=283  Identities=22%  Similarity=0.371  Sum_probs=245.9

Q ss_pred             CCCCCCcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEE
Q 047260          434 SEGTGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCC  513 (784)
Q Consensus       434 ~~~~~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l  513 (784)
                      ..++...+.+..+.++... +.+|+.|+.+++|+..+.                          ..+..+.+|...|.++
T Consensus        19 ~~gh~~~v~~~~~s~~~~~-l~s~~~dg~i~iw~~~~~--------------------------~~~~~~~~h~~~v~~~   71 (312)
T 4ery_A           19 LAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDG--------------------------KFEKTISGHKLGISDV   71 (312)
T ss_dssp             ECCCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTC--------------------------CEEEEECCCSSCEEEE
T ss_pred             EcccCCcEEEEEECCCCCE-EEEeeCCCeEEEEeCCCc--------------------------ccchhhccCCCceEEE
Confidence            3455556777778776654 457889999999965322                          1345577899999999


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCC
Q 047260          514 HFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSS  593 (784)
Q Consensus       514 ~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~  593 (784)
                      +|+|++++|++|+.|+.|+|||+.+++.+..+.+|...|.+++|+|++++|++|+.|+.|++||+++++ ....+..|..
T Consensus        72 ~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~  150 (312)
T 4ery_A           72 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-CLKTLPAHSD  150 (312)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC-EEEEECCCSS
T ss_pred             EEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCE-EEEEecCCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999876 6677888999


Q ss_pred             CeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec----CCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEE
Q 047260          594 PIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK----GGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHS  669 (784)
Q Consensus       594 ~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~----~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~  669 (784)
                      +|.+++|+|++. ++++++.|+.|++||+++.+.+..+.    ..+..++|+|++.+|++++.|+.|++||+++++.+..
T Consensus       151 ~v~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  229 (312)
T 4ery_A          151 PVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT  229 (312)
T ss_dssp             CEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEE
T ss_pred             cEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE
Confidence            999999999887 78889999999999999877765542    5678899999999999999999999999999999999


Q ss_pred             EeCCCCCEEE---EEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEE--CCCeEEEEE
Q 047260          670 LQGHAELVNY---ICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVG--GISSLELWN  743 (784)
Q Consensus       670 l~~h~~~V~s---l~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s--~dg~I~Iwd  743 (784)
                      +.+|...+.+   ....+++.+|++++.+ .|++||+.+++.+..+.+|...|.+++|+|++.++++++  .|+.|++|+
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~  309 (312)
T 4ery_A          230 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK  309 (312)
T ss_dssp             ECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEE
T ss_pred             EEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEec
Confidence            9888764332   2334678899998865 999999999999999999999999999999999999987  589999998


Q ss_pred             CC
Q 047260          744 MA  745 (784)
Q Consensus       744 l~  745 (784)
                      .+
T Consensus       310 ~d  311 (312)
T 4ery_A          310 SD  311 (312)
T ss_dssp             CC
T ss_pred             CC
Confidence            64

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4.4e-36  Score=329.11  Aligned_cols=279  Identities=16%  Similarity=0.185  Sum_probs=228.9

Q ss_pred             eecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC--ceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCC
Q 047260          503 IRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTL--QTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAAN  580 (784)
Q Consensus       503 l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~--~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~  580 (784)
                      +..|.+.|+|++|+|++++||+|+.|+.|+|||+.++  +.+..+.+|...|++++|+|++++|++++.|++|+|||+.+
T Consensus         7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~   86 (377)
T 3dwl_C            7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRP   86 (377)
T ss_dssp             EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC----
T ss_pred             EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Confidence            4457889999999999999999999999999999988  78888999999999999999999999999999999999987


Q ss_pred             Cc--ceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe------eEEe-ecCCeeEEEEecCCCEEEEEE
Q 047260          581 PN--FCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFL------CTHI-TKGGTAQVRFQPRIGQLLAAA  651 (784)
Q Consensus       581 ~~--~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~------~~~~-~~~~v~~v~fsp~~~~Ll~~s  651 (784)
                      +.  .....+.+|...|.+++|+|++. +|++++.|+.|++||++...      .+.. +...+.+++|+|++.+|++++
T Consensus        87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~  165 (377)
T 3dwl_C           87 DGTWKQTLVLLRLNRAATFVRWSPNED-KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGC  165 (377)
T ss_dssp             --CCCCEEECCCCSSCEEEEECCTTSS-CCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEE
T ss_pred             CCceeeeeEecccCCceEEEEECCCCC-EEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEe
Confidence            65  23455678999999999999877 67788899999999998754      2222 567899999999999999999


Q ss_pred             CCCcEEEEECC------------------CCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCce----E
Q 047260          652 SDKVVSIFDIE------------------TDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGEC----I  708 (784)
Q Consensus       652 ~Dg~I~IwDl~------------------t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~----i  708 (784)
                      .|+.|++||++                  .++++..+ +|...|.+++|+|++++|++++.+ .|+|||+.++++    +
T Consensus       166 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  244 (377)
T 3dwl_C          166 ADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRAL  244 (377)
T ss_dssp             SSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEEC
T ss_pred             CCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceee
Confidence            99999999985                  35566666 899999999999999999999866 999999999987    7


Q ss_pred             EEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCce---------------------------------------
Q 047260          709 QELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKS---------------------------------------  749 (784)
Q Consensus       709 ~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~---------------------------------------  749 (784)
                      ..+..|...|.+++|+|++.+|++++.++.+ +|+......                                       
T Consensus       245 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (377)
T 3dwl_C          245 ITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRST  323 (377)
T ss_dssp             CCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC------------
T ss_pred             EeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeeccccccccccccccccccccccccccccccccc
Confidence            8888999999999999999988887666555 776552110                                       


Q ss_pred             E--------------EecccCCceEEEEEeCCC-C---EEEEEECCCcEEEeC
Q 047260          750 M--------------TIAAHENIISALAQSPVT-G---MVASASHDSSVKLWK  784 (784)
Q Consensus       750 ~--------------~~~~h~~~V~slafspdg-~---~LaSgs~DG~V~IWd  784 (784)
                      .              ....|.+.|+++++.+.. .   .|+||+.||.|+|||
T Consensus       324 ~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWd  376 (377)
T 3dwl_C          324 FRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWT  376 (377)
T ss_dssp             -------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEEC
T ss_pred             ccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEec
Confidence            0              001299999999977644 3   699999999999997

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-35  Score=329.38  Aligned_cols=276  Identities=18%  Similarity=0.313  Sum_probs=244.4

Q ss_pred             CceEEEEEcCCCC-EEEEE----------eCCCeEEEEECCCCc---eeeecCCCCCCeEEEEEccCCCEEEEEeCCCeE
Q 047260          508 SKVTCCHFSSDGK-LLASS----------GHDRKVVLWNMDTLQ---TESTPEDHKSVVTDVRFRPNSSQLATASVDKSV  573 (784)
Q Consensus       508 ~~V~~l~fspdg~-~Lasg----------s~Dg~I~IWd~~t~~---~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I  573 (784)
                      ..|.+++|+|+++ +|++|          +.|+.|+|||+.++.   .+..+ .|...|++++|+|++++|++++.||.|
T Consensus        13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v   91 (416)
T 2pm9_A           13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSL   91 (416)
T ss_dssp             EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCE
T ss_pred             hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeE
Confidence            4689999999987 99999          889999999999875   33333 689999999999999999999999999


Q ss_pred             EEEcCCC---CcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe------eE------EeecCCeeEE
Q 047260          574 RLWDAAN---PNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFL------CT------HITKGGTAQV  638 (784)
Q Consensus       574 ~IWdl~~---~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~------~~------~~~~~~v~~v  638 (784)
                      ++||+.+   +......+.+|...|.+++|+|++..+|++++.|+.|++||+++..      ..      ..+...+.++
T Consensus        92 ~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  171 (416)
T 2pm9_A           92 ELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISL  171 (416)
T ss_dssp             EEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEE
T ss_pred             EEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEE
Confidence            9999987   2336777889999999999999966689999999999999998765      22      2245789999


Q ss_pred             EEecC-CCEEEEEECCCcEEEEECCCCeEEEEEeCC------CCCEEEEEEcCCC-CEEEEEeCC----eEEEEeCCCC-
Q 047260          639 RFQPR-IGQLLAAASDKVVSIFDIETDRQTHSLQGH------AELVNYICWDTNG-DYLASVSQN----LVKVWSMASG-  705 (784)
Q Consensus       639 ~fsp~-~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h------~~~V~sl~~spdg-~~Lasgsdd----~I~IwDl~t~-  705 (784)
                      +|+|+ +..|++++.|+.|++||+++++.+..+..+      ...|.+++|+|++ .+|++++++    .|++||++++ 
T Consensus       172 ~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~  251 (416)
T 2pm9_A          172 AWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN  251 (416)
T ss_dssp             EECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT
T ss_pred             EeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC
Confidence            99999 678888999999999999999999988876      7899999999997 688888755    9999999986 


Q ss_pred             ceEEEec-cCCCceEEEEEec-CCCEEEEEECCCeEEEEECCCCceE-EecccCCceEEEEEeCCC-CEEEEEECCCcEE
Q 047260          706 ECIQELS-SNGNQFHSCVFHP-SYSTLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVT-GMVASASHDSSVK  781 (784)
Q Consensus       706 ~~i~~l~-~~~~~I~sl~fsp-dg~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg-~~LaSgs~DG~V~  781 (784)
                      .++..+. .|...|.+++|+| ++.+|++++.|+.|++||+.+++.+ .+..|...|.+++|+|++ .+|++++.||.|+
T Consensus       252 ~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~  331 (416)
T 2pm9_A          252 TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIE  331 (416)
T ss_dssp             SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEE
T ss_pred             CCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEE
Confidence            6777887 8999999999999 8999999999999999999998877 677899999999999999 8999999999999


Q ss_pred             EeC
Q 047260          782 LWK  784 (784)
Q Consensus       782 IWd  784 (784)
                      |||
T Consensus       332 iw~  334 (416)
T 2pm9_A          332 VQT  334 (416)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            996

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=5.4e-34  Score=311.28  Aligned_cols=286  Identities=17%  Similarity=0.270  Sum_probs=233.0

Q ss_pred             cccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCC
Q 047260          440 LASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDG  519 (784)
Q Consensus       440 ~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg  519 (784)
                      .++...+.++...+ ++|+.|+.|++|+.....                       .........+|...|++++|+|++
T Consensus        18 ~v~~l~~sp~g~~l-as~~~D~~i~iw~~~~~~-----------------------~~~~~~~~~~h~~~v~~~~~sp~g   73 (345)
T 3fm0_A           18 RCWFLAWNPAGTLL-ASCGGDRRIRIWGTEGDS-----------------------WICKSVLSEGHQRTVRKVAWSPCG   73 (345)
T ss_dssp             CEEEEEECTTSSCE-EEEETTSCEEEEEEETTE-----------------------EEEEEEECSSCSSCEEEEEECTTS
T ss_pred             cEEEEEECCCCCEE-EEEcCCCeEEEEEcCCCc-----------------------ceeeeeeccccCCcEEEEEECCCC
Confidence            45667777766555 578899999999874321                       011222346899999999999999


Q ss_pred             CEEEEEeCCCeEEEEECCCC--ceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCc--ceeeeccCCCCCe
Q 047260          520 KLLASSGHDRKVVLWNMDTL--QTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPN--FCSQAYTGHSSPI  595 (784)
Q Consensus       520 ~~Lasgs~Dg~I~IWd~~t~--~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~--~~~~~~~~h~~~V  595 (784)
                      ++|++|+.|+.|+|||+.+.  +.+..+.+|...|++++|+|++++|++|+.|++|+|||+++..  .+...+.+|...|
T Consensus        74 ~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v  153 (345)
T 3fm0_A           74 NYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDV  153 (345)
T ss_dssp             SEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCE
T ss_pred             CEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCe
Confidence            99999999999999999866  4577889999999999999999999999999999999998754  2456678999999


Q ss_pred             EEEEEcCCCCcEEEEEeCCCeEEEEeCCCCee--EE---eecCCeeEEEEecCCCEEEEEECCCcEEEEECCCC------
Q 047260          596 MSLDFHPKKTDLFCFCDNDNEIQYWSINPFLC--TH---ITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETD------  664 (784)
Q Consensus       596 ~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~--~~---~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~------  664 (784)
                      .+++|+|++. +|++++.|+.|++||++....  ..   .+...|.+++|+|++.+|++++.|+.|+|||....      
T Consensus       154 ~~~~~~p~~~-~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~  232 (345)
T 3fm0_A          154 KHVVWHPSQE-LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGV  232 (345)
T ss_dssp             EEEEECSSSS-CEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCC
T ss_pred             EEEEECCCCC-EEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccc
Confidence            9999999987 788899999999999987542  22   34578999999999999999999999999996321      


Q ss_pred             ---------eEEEEEeC-CCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCc---------eEEEeccCCCceEEEEEe
Q 047260          665 ---------RQTHSLQG-HAELVNYICWDTNGDYLASVSQN-LVKVWSMASGE---------CIQELSSNGNQFHSCVFH  724 (784)
Q Consensus       665 ---------~~i~~l~~-h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~---------~i~~l~~~~~~I~sl~fs  724 (784)
                               +++..+.+ |...|.+++|+|++.+|++++.+ .|++|+...+.         ......+|...|.+++|+
T Consensus       233 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~  312 (345)
T 3fm0_A          233 ACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWN  312 (345)
T ss_dssp             CCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEEC
T ss_pred             eeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEe
Confidence                     34455555 88899999999999999998866 99999987642         122335788999999999


Q ss_pred             cCCC-EEEEEECCCeEEEEECCCCceE
Q 047260          725 PSYS-TLLVVGGISSLELWNMAENKSM  750 (784)
Q Consensus       725 pdg~-~L~s~s~dg~I~Iwdl~~~~~~  750 (784)
                      |++. +|++++.||+|++|++.+++..
T Consensus       313 p~~~~~laS~s~Dg~v~~W~~~~~~~~  339 (345)
T 3fm0_A          313 PKEPGLLASCSDDGEVAFWKYQRPEGL  339 (345)
T ss_dssp             SSSTTEEEEEETTSCEEEEEECC----
T ss_pred             CCCceEEEEcCCCCcEEEEEecCCCCc
Confidence            9984 8999999999999999887754

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.9e-35  Score=326.36  Aligned_cols=283  Identities=16%  Similarity=0.278  Sum_probs=235.8

Q ss_pred             eEEeEe-ecCCCceEEEEEcC-CCCEEEEEeCCCeEEEEECCC---Cc---eeeecCCCCCCeEEEEEccCCCEEEEEeC
Q 047260          498 CEVGCI-RSRNSKVTCCHFSS-DGKLLASSGHDRKVVLWNMDT---LQ---TESTPEDHKSVVTDVRFRPNSSQLATASV  569 (784)
Q Consensus       498 ~~i~~l-~~H~~~V~~l~fsp-dg~~Lasgs~Dg~I~IWd~~t---~~---~~~~l~~h~~~It~i~fspdg~~Latgs~  569 (784)
                      ..+..+ .+|.+.|++++|+| ++++||+|+.||.|+|||+.+   +.   ....+ .|...|++++|+|++++|++++.
T Consensus        53 ~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~  131 (437)
T 3gre_A           53 KLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSK  131 (437)
T ss_dssp             CEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEET
T ss_pred             eEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeC
Confidence            456667 88999999999999 999999999999999999876   33   22333 59999999999999999999999


Q ss_pred             CCeEEEEcCC---CCcceeeecc----------C--CCCCeEEEE--EcCCCCcEEEEEeCCCeEEEEeCCCCeeEEee-
Q 047260          570 DKSVRLWDAA---NPNFCSQAYT----------G--HSSPIMSLD--FHPKKTDLFCFCDNDNEIQYWSINPFLCTHIT-  631 (784)
Q Consensus       570 Dg~I~IWdl~---~~~~~~~~~~----------~--h~~~V~sl~--~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~-  631 (784)
                      ||.|++||++   ++. ......          .  +...+.++.  +++++. ++++++.|+.|++||+++.+++..+ 
T Consensus       132 dg~i~vwd~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~  209 (437)
T 3gre_A          132 DGQIIVLKVNHYQQES-EVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKS-LLVALTNLSRVIIFDIRTLERLQIIE  209 (437)
T ss_dssp             TSEEEEEEEEEEEETT-EEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCE-EEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEEeccccCCc-eeeccccceeEEEEccCcccccCceEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCeeeEEEc
Confidence            9999999995   332 222211          1  456677776  445554 8889999999999999987776554 


Q ss_pred             ----cCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEe-CCCCCEEEEEEcC----CCCEEEEEeCC-eEEEEe
Q 047260          632 ----KGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQ-GHAELVNYICWDT----NGDYLASVSQN-LVKVWS  701 (784)
Q Consensus       632 ----~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~-~h~~~V~sl~~sp----dg~~Lasgsdd-~I~IwD  701 (784)
                          ...+.+++|+|++.+|++++.||.|++||+++++++..+. .|...|.+++|+|    ++.+|++++.+ .|+|||
T Consensus       210 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd  289 (437)
T 3gre_A          210 NSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWN  289 (437)
T ss_dssp             CCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEE
T ss_pred             cCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEE
Confidence                4679999999999999999999999999999999999886 7888999997664    67799999876 899999


Q ss_pred             CCCCceEEEeccC--------------------------CCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE-Eecc
Q 047260          702 MASGECIQELSSN--------------------------GNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM-TIAA  754 (784)
Q Consensus       702 l~t~~~i~~l~~~--------------------------~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~-~~~~  754 (784)
                      +++++++..+..|                          ...|.+++|+ ++.+|++++.|+.|++||+.+++.. .+..
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~  368 (437)
T 3gre_A          290 FVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVIS  368 (437)
T ss_dssp             TTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEEC
T ss_pred             cCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEec
Confidence            9999988887643                          3457889999 7789999999999999999987754 2222


Q ss_pred             -------------------------------------cCCceEEEEEeCC--CCEEEEEECCCcEEEeC
Q 047260          755 -------------------------------------HENIISALAQSPV--TGMVASASHDSSVKLWK  784 (784)
Q Consensus       755 -------------------------------------h~~~V~slafspd--g~~LaSgs~DG~V~IWd  784 (784)
                                                           |...|++++|+++  +.+|++|+.||.|+||+
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          369 PSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             C--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             ccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence                                                 8999999999998  77999999999999996

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.2e-34  Score=320.78  Aligned_cols=286  Identities=18%  Similarity=0.325  Sum_probs=243.0

Q ss_pred             CCCCCcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEE
Q 047260          435 EGTGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCH  514 (784)
Q Consensus       435 ~~~~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~  514 (784)
                      .++...+.+..+.++...+ .+|+.|++|++|+....                          ..+..+..|...|.+++
T Consensus        63 ~gH~~~V~~~~~sp~~~~l-~s~s~D~~v~iWd~~~~--------------------------~~~~~~~~h~~~v~~~~  115 (380)
T 3iz6_a           63 QGHSGKVYSLDWTPEKNWI-VSASQDGRLIVWNALTS--------------------------QKTHAIKLHCPWVMECA  115 (380)
T ss_dssp             CCCSSCEEEEEECTTSSCE-EEEETTSEEEEEETTTT--------------------------EEEEEEECCCTTCCCCE
T ss_pred             cccccEEEEEEEcCCCCEE-EEEeCCCeEEEEECCCC--------------------------ccceEEecCCCCEEEEE
Confidence            4555567778887776555 47999999999976322                          24567788999999999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEECCCC-------ceeeecCCCCCCeEEEEEccC-CCEEEEEeCCCeEEEEcCCCCcceee
Q 047260          515 FSSDGKLLASSGHDRKVVLWNMDTL-------QTESTPEDHKSVVTDVRFRPN-SSQLATASVDKSVRLWDAANPNFCSQ  586 (784)
Q Consensus       515 fspdg~~Lasgs~Dg~I~IWd~~t~-------~~~~~l~~h~~~It~i~fspd-g~~Latgs~Dg~I~IWdl~~~~~~~~  586 (784)
                      |+|++++|++|+.|+.|+|||+.+.       .....+.+|.+.|.++.|+|+ +..|++|+.|++|++||+.++.. ..
T Consensus       116 ~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~-~~  194 (380)
T 3iz6_a          116 FAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQR-IS  194 (380)
T ss_dssp             ECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCE-EE
T ss_pred             ECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcE-EE
Confidence            9999999999999999999998753       234567899999999999996 55799999999999999998763 33


Q ss_pred             ec-----cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCC-CeeE---EeecCCeeEEEEecCCCEEEEEECCCcEE
Q 047260          587 AY-----TGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINP-FLCT---HITKGGTAQVRFQPRIGQLLAAASDKVVS  657 (784)
Q Consensus       587 ~~-----~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~-~~~~---~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~  657 (784)
                      .+     .+|...|.+++|++.+..+|++|+.|+.|++||++. ...+   ..+...|.+++|+|++.+|++++.|+.|+
T Consensus       195 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~  274 (380)
T 3iz6_a          195 IFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCR  274 (380)
T ss_dssp             EECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEE
T ss_pred             EeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEE
Confidence            33     579999999999986667999999999999999973 3333   34567899999999999999999999999


Q ss_pred             EEECCCCeEEEEEeCCC-------CCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEe----ccCCCceEEEEEec
Q 047260          658 IFDIETDRQTHSLQGHA-------ELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQEL----SSNGNQFHSCVFHP  725 (784)
Q Consensus       658 IwDl~t~~~i~~l~~h~-------~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l----~~~~~~I~sl~fsp  725 (784)
                      +||+++++.+..+..+.       ..|++++|+|+|++|++++.+ .|+|||+.+++.+..+    .+|...|.+++|+|
T Consensus       275 lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~  354 (380)
T 3iz6_a          275 LFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSS  354 (380)
T ss_dssp             EEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECS
T ss_pred             EEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECC
Confidence            99999999888876543       248999999999999999865 9999999999988887    57899999999999


Q ss_pred             CCCEEEEEECCCeEEEEECCCCc
Q 047260          726 SYSTLLVVGGISSLELWNMAENK  748 (784)
Q Consensus       726 dg~~L~s~s~dg~I~Iwdl~~~~  748 (784)
                      ++.+|++++.|++|+||++...+
T Consensus       355 dg~~l~sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          355 DGSALCTGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             SSSEEEEECTTSCEEEEECCSSS
T ss_pred             CCCEEEEeeCCCCEEEEecCCCc
Confidence            99999999999999999998654

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=2.4e-33  Score=316.86  Aligned_cols=280  Identities=16%  Similarity=0.304  Sum_probs=246.3

Q ss_pred             eEEeEeecCCCce-EEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEE
Q 047260          498 CEVGCIRSRNSKV-TCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLW  576 (784)
Q Consensus       498 ~~i~~l~~H~~~V-~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IW  576 (784)
                      .....+.+|.+.| .|+.|  ++++|++|+.||.|++||+.+++.+..+.+|...|++++|++++ +|++|+.||+|++|
T Consensus       112 ~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vw  188 (464)
T 3v7d_B          112 PQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVW  188 (464)
T ss_dssp             CEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEE
T ss_pred             cceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEE
Confidence            3556788999885 66666  56799999999999999999999999999999999999999988 99999999999999


Q ss_pred             cCCCCcceeeeccCCCCCeEEEEEcCC-CCcEEEEEeCCCeEEEEeCCCCeeE-----------------------Eeec
Q 047260          577 DAANPNFCSQAYTGHSSPIMSLDFHPK-KTDLFCFCDNDNEIQYWSINPFLCT-----------------------HITK  632 (784)
Q Consensus       577 dl~~~~~~~~~~~~h~~~V~sl~~sp~-~~~ll~sgs~dg~I~iwDl~~~~~~-----------------------~~~~  632 (784)
                      |+++++ ....+.+|...|.+++|++. +..++++++.|+.|++||++.....                       ....
T Consensus       189 d~~~~~-~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (464)
T 3v7d_B          189 DIKKGC-CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR  267 (464)
T ss_dssp             ETTTTE-EEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEEC
T ss_pred             ECCCCc-EEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEcc
Confidence            999876 67778899999999999963 3358999999999999999865422                       2222


Q ss_pred             C-CeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEE
Q 047260          633 G-GTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQE  710 (784)
Q Consensus       633 ~-~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~  710 (784)
                      + .....++++++..+++++.|+.|++||+++++.+..+.+|...|.+++|+|++.+|++++.+ .|++||+++++++.+
T Consensus       268 ~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~  347 (464)
T 3v7d_B          268 GHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYT  347 (464)
T ss_dssp             CCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             CccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEE
Confidence            2 12233457888999999999999999999999999999999999999999999999999966 999999999999999


Q ss_pred             eccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          711 LSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       711 l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      +..|...|.++.|+  +.+|++++.||.|++||+.+........|...+..++|++++.+|++++ ||.|+|||
T Consensus       348 ~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd  418 (464)
T 3v7d_B          348 LQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYN  418 (464)
T ss_dssp             ECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEE
T ss_pred             EeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEE
Confidence            99999999999997  4699999999999999999988776667888899999999999999998 89999996

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=5e-34  Score=305.50  Aligned_cols=276  Identities=16%  Similarity=0.248  Sum_probs=243.1

Q ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCccee
Q 047260          506 RNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCS  585 (784)
Q Consensus       506 H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~  585 (784)
                      |.+.|.+++|+|||++++++..++.+.+|+............|...|++++|+|++++|++++ ||.|++||+.++....
T Consensus         8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~   86 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS   86 (337)
T ss_dssp             EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS
T ss_pred             cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee
Confidence            566799999999999999988888787776665544445558999999999999999999998 9999999998754221


Q ss_pred             --eec--cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe--eEEe---ecCCeeEEEEecCCCEEEEEECCCcE
Q 047260          586 --QAY--TGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFL--CTHI---TKGGTAQVRFQPRIGQLLAAASDKVV  656 (784)
Q Consensus       586 --~~~--~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~--~~~~---~~~~v~~v~fsp~~~~Ll~~s~Dg~I  656 (784)
                        ..+  .+|...|.+++|+|++. ++++++.|+.|++||++...  ....   +...+.+++|+|++..+++++.|+.|
T Consensus        87 ~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v  165 (337)
T 1gxr_A           87 PVSQLDCLNRDNYIRSCKLLPDGC-TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNI  165 (337)
T ss_dssp             CSEEEECSCTTSBEEEEEECTTSS-EEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             eeecccccCCCCcEEEEEEcCCCC-EEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcE
Confidence              222  27899999999999886 77788899999999998765  3322   34678999999999999999999999


Q ss_pred             EEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEEC
Q 047260          657 SIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGG  735 (784)
Q Consensus       657 ~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~  735 (784)
                      ++||+++++.+..+..|...|.+++|+|++.+|++++.+ .|++||+++++.+..+. +...+.+++|+|++.+|++++.
T Consensus       166 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~  244 (337)
T 1gxr_A          166 AVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGME  244 (337)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEET
T ss_pred             EEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcC
Confidence            999999999999999999999999999999999999855 99999999999888774 5678999999999999999999


Q ss_pred             CCeEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          736 ISSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       736 dg~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      ++.|++||+.+++...+..|...|.+++|+|++++|++++.||.|++||
T Consensus       245 ~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~  293 (337)
T 1gxr_A          245 SSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWR  293 (337)
T ss_dssp             TSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             CCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEE
Confidence            9999999999999888999999999999999999999999999999996

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=3e-34  Score=321.26  Aligned_cols=275  Identities=16%  Similarity=0.309  Sum_probs=233.2

Q ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----------eeeecCCCC------------CCeEEEEEccCC-
Q 047260          506 RNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQ-----------TESTPEDHK------------SVVTDVRFRPNS-  561 (784)
Q Consensus       506 H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~-----------~~~~l~~h~------------~~It~i~fspdg-  561 (784)
                      |.+.|+|++|+|+|++||+|+.||.|+|||+.+++           ....+.+|.            ..|++++|+|++ 
T Consensus        27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~  106 (447)
T 3dw8_B           27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN  106 (447)
T ss_dssp             GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred             ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence            67899999999999999999999999999999876           577888998            889999999998 


Q ss_pred             -CEEEEEeCCCeEEEEcCCCCcce--------------------------------------e-eeccCCCCCeEEEEEc
Q 047260          562 -SQLATASVDKSVRLWDAANPNFC--------------------------------------S-QAYTGHSSPIMSLDFH  601 (784)
Q Consensus       562 -~~Latgs~Dg~I~IWdl~~~~~~--------------------------------------~-~~~~~h~~~V~sl~~s  601 (784)
                       .+|++++.|++|++||+.+....                                      . ....+|...|.+++|+
T Consensus       107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  186 (447)
T 3dw8_B          107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISIN  186 (447)
T ss_dssp             SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEEC
T ss_pred             cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEc
Confidence             79999999999999998763311                                      0 1236899999999999


Q ss_pred             CCCCcEEEEEeCCCeEEEEeCCC-CeeEE----------eecCCeeEEEEecCC-CEEEEEECCCcEEEEECCCCeE---
Q 047260          602 PKKTDLFCFCDNDNEIQYWSINP-FLCTH----------ITKGGTAQVRFQPRI-GQLLAAASDKVVSIFDIETDRQ---  666 (784)
Q Consensus       602 p~~~~ll~sgs~dg~I~iwDl~~-~~~~~----------~~~~~v~~v~fsp~~-~~Ll~~s~Dg~I~IwDl~t~~~---  666 (784)
                      |++. +|+++ .|+.|++||++. .....          .+...+.+++|+|++ ..|++++.|+.|++||+++++.   
T Consensus       187 ~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~  264 (447)
T 3dw8_B          187 SDYE-TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR  264 (447)
T ss_dssp             TTSS-EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred             CCCC-EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence            9877 66677 799999999994 44443          344679999999998 8999999999999999999886   


Q ss_pred             -EEEEeCCCC------------CEEEEEEcCCCCEEEEEeCCeEEEEeCCC-CceEEEeccCCCc---------------
Q 047260          667 -THSLQGHAE------------LVNYICWDTNGDYLASVSQNLVKVWSMAS-GECIQELSSNGNQ---------------  717 (784)
Q Consensus       667 -i~~l~~h~~------------~V~sl~~spdg~~Lasgsdd~I~IwDl~t-~~~i~~l~~~~~~---------------  717 (784)
                       +..+..|..            .|.+++|+|++++|++++++.|+|||+++ ++++..+..|...               
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~  344 (447)
T 3dw8_B          265 HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFD  344 (447)
T ss_dssp             TCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGC
T ss_pred             eeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceeecccccccccccccccccccc
Confidence             788888876            89999999999999999999999999997 8888888877532               


Q ss_pred             eEEEEEecCCCEEEEEECCCeEEEEECCCCceEEeccc---------------------------------CCceEEEEE
Q 047260          718 FHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIAAH---------------------------------ENIISALAQ  764 (784)
Q Consensus       718 I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~~~h---------------------------------~~~V~slaf  764 (784)
                      +..++|+|++.+|++++.||.|++||+.+++.+.+..|                                 ...|.+++|
T Consensus       345 ~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  424 (447)
T 3dw8_B          345 KFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAW  424 (447)
T ss_dssp             CCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEE
T ss_pred             ceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeEEEE
Confidence            23499999999999999999999999999887764433                                 456889999


Q ss_pred             eCCCCEEEEEECCCcEEEe
Q 047260          765 SPVTGMVASASHDSSVKLW  783 (784)
Q Consensus       765 spdg~~LaSgs~DG~V~IW  783 (784)
                      +|++++||+++.++ +++|
T Consensus       425 ~p~~~~la~~~~~~-~~~~  442 (447)
T 3dw8_B          425 HPKENIIAVATTNN-LYIF  442 (447)
T ss_dssp             CSSSSEEEEECSSC-EEEE
T ss_pred             CCCCCEEEEEecce-eeee
Confidence            99999999998876 6666

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=2.8e-33  Score=325.86  Aligned_cols=314  Identities=18%  Similarity=0.288  Sum_probs=268.7

Q ss_pred             CCcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCc-eEEEEEc
Q 047260          438 GSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSK-VTCCHFS  516 (784)
Q Consensus       438 ~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~-V~~l~fs  516 (784)
                      ...+.+..+.++...++. ++ ++.+.+|+.....                      .....+..+.+|.+. |++++|+
T Consensus        18 ~~~v~~~~~spdg~~l~~-~~-~~~v~v~~~~~~~----------------------~~~~~~~~~~~h~~~~v~~~~~s   73 (615)
T 1pgu_A           18 RNFTTHLSYDPTTNAIAY-PC-GKSAFVRCLDDGD----------------------SKVPPVVQFTGHGSSVVTTVKFS   73 (615)
T ss_dssp             TTCCCCCEEETTTTEEEE-EE-TTEEEEEECCSSC----------------------CSSCSEEEECTTTTSCEEEEEEC
T ss_pred             cCceeEEEECCCCCEEEE-ec-CCeEEEEECCCCC----------------------CccccceEEecCCCceEEEEEEC
Confidence            344566677777666654 54 7899999764321                      011245678899999 9999999


Q ss_pred             C--CCCEEEEEeCCCeEEEEECCCC--------ceeeecCCCCCCeEEEEEccCCCEEEEEeCC----CeEEEEcCCCCc
Q 047260          517 S--DGKLLASSGHDRKVVLWNMDTL--------QTESTPEDHKSVVTDVRFRPNSSQLATASVD----KSVRLWDAANPN  582 (784)
Q Consensus       517 p--dg~~Lasgs~Dg~I~IWd~~t~--------~~~~~l~~h~~~It~i~fspdg~~Latgs~D----g~I~IWdl~~~~  582 (784)
                      |  ++++||+|+.||.|+|||+.++        +....+..|...|.+++|+|++++|++++.|    +.|++||..  +
T Consensus        74 p~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~--~  151 (615)
T 1pgu_A           74 PIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSG--N  151 (615)
T ss_dssp             SSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTC--C
T ss_pred             cCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECC--C
Confidence            9  9999999999999999999744        6777888899999999999999999999988    799999943  3


Q ss_pred             ceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---C---CeeEEEEecC-CCEEEEEECCCc
Q 047260          583 FCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK---G---GTAQVRFQPR-IGQLLAAASDKV  655 (784)
Q Consensus       583 ~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~---~v~~v~fsp~-~~~Ll~~s~Dg~  655 (784)
                       ....+.+|...|.+++|+|++..++++++.|+.|++||+.+.+.+..+.   .   .+.+++|+|+ +.+|++++.|+.
T Consensus       152 -~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  230 (615)
T 1pgu_A          152 -SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK  230 (615)
T ss_dssp             -EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCC
T ss_pred             -cceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCe
Confidence             5677889999999999999998889999999999999999988776654   4   7899999999 999999999999


Q ss_pred             EEEEECCCCeEEEEE-e---CCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccC----CCceEEEEEecC
Q 047260          656 VSIFDIETDRQTHSL-Q---GHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSN----GNQFHSCVFHPS  726 (784)
Q Consensus       656 I~IwDl~t~~~i~~l-~---~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~----~~~I~sl~fspd  726 (784)
                      |++||+++++.+..+ .   .|...|.+++|+ ++.+|++++.+ .|++||+++++++..+..+    ...+.++.|. +
T Consensus       231 i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  308 (615)
T 1pgu_A          231 ISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-G  308 (615)
T ss_dssp             EEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-E
T ss_pred             EEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-C
Confidence            999999999999998 6   899999999999 99999999865 9999999999999998876    3567788886 8


Q ss_pred             CCEEEEEECCCeEEEEECCCCceE-EecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          727 YSTLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       727 g~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      +.++++++.|+.|++||+.+++.+ .+..|...|.+++| |+   |++++.||.|++||
T Consensus       309 ~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~---l~~~~~dg~i~~w~  363 (615)
T 1pgu_A          309 NGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NP---LISGSYDGRIMEWS  363 (615)
T ss_dssp             TTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TT---TEEEETTSCEEETT
T ss_pred             CCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC---cEEECCCCeEEEEE
Confidence            889999999999999999987766 66788888999988 77   77788888888886

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-33  Score=305.21  Aligned_cols=282  Identities=19%  Similarity=0.351  Sum_probs=219.3

Q ss_pred             CCCCcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEe-ec-CCCceEEE
Q 047260          436 GTGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCI-RS-RNSKVTCC  513 (784)
Q Consensus       436 ~~~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l-~~-H~~~V~~l  513 (784)
                      ++...+.+..+.++   ++.+|+.|+.+++|+...+.                        +..+..+ .+ |.+.|+++
T Consensus        12 ~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~------------------------~~~~~~~~~~~h~~~v~~v   64 (330)
T 2hes_X           12 LYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDD------------------------FTLIDVLDETAHKKAIRSV   64 (330)
T ss_dssp             CCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSC------------------------CEEEEEECTTCCCSCEEEE
T ss_pred             cCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCC------------------------eEEEEEEecCCccCCEEEE
Confidence            34444566666554   67789999999999773221                        1223334 33 99999999


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEECCC-------CceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCc---c
Q 047260          514 HFSSDGKLLASSGHDRKVVLWNMDT-------LQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPN---F  583 (784)
Q Consensus       514 ~fspdg~~Lasgs~Dg~I~IWd~~t-------~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~---~  583 (784)
                      +|+|++++|++|+.|++|+|||+..       .+.+..+.+|...|++++|+|++++|++|+.|++|+|||+....   .
T Consensus        65 ~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~  144 (330)
T 2hes_X           65 AWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYE  144 (330)
T ss_dssp             EECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCE
T ss_pred             EECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeE
Confidence            9999999999999999999999853       35667788999999999999999999999999999999995322   3


Q ss_pred             eeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC--eeEEe---ecCCeeEEEEecC--CCEEEEEECCCcE
Q 047260          584 CSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPF--LCTHI---TKGGTAQVRFQPR--IGQLLAAASDKVV  656 (784)
Q Consensus       584 ~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~--~~~~~---~~~~v~~v~fsp~--~~~Ll~~s~Dg~I  656 (784)
                      +...+.+|...|.+++|+|++. +|++++.|+.|++||+...  .++..   +...+.++.|+|+  +..|++++.|+.|
T Consensus       145 ~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v  223 (330)
T 2hes_X          145 CISVLQEHSQDVKHVIWHPSEA-LLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTV  223 (330)
T ss_dssp             EEEEECCCSSCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCE
T ss_pred             EEEEeccCCCceEEEEECCCCC-EEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeE
Confidence            5567789999999999999976 8889999999999998764  44444   4467899999998  6689999999999


Q ss_pred             EEEECCCC--------eEEEEEeC-CCCCEEEEEEcCCCCEEEEEe-CCeEEEEeCCCCc--eEEE-eccCCC-ceEEEE
Q 047260          657 SIFDIETD--------RQTHSLQG-HAELVNYICWDTNGDYLASVS-QNLVKVWSMASGE--CIQE-LSSNGN-QFHSCV  722 (784)
Q Consensus       657 ~IwDl~t~--------~~i~~l~~-h~~~V~sl~~spdg~~Lasgs-dd~I~IwDl~t~~--~i~~-l~~~~~-~I~sl~  722 (784)
                      ++||++.+        .....+.. |...|.+++|++++ +|++++ |+.|+|||..+++  .+.. +..|.. .|.+++
T Consensus       224 ~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~  302 (330)
T 2hes_X          224 RVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVK  302 (330)
T ss_dssp             EEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEE
T ss_pred             EEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEE
Confidence            99998754        34455555 89999999999776 566665 5599999998874  3333 356766 899999


Q ss_pred             Eec--CCCEEEEEECCCeEEEEECCC
Q 047260          723 FHP--SYSTLLVVGGISSLELWNMAE  746 (784)
Q Consensus       723 fsp--dg~~L~s~s~dg~I~Iwdl~~  746 (784)
                      |+|  ++.+|++++.||.|+|||+.+
T Consensus       303 ~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          303 WLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             EC-----CCEEEEETTSEEEEEEC--
T ss_pred             EecCCCceEEEEecCCCcEEEEEecc
Confidence            999  688999999999999999864

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=5.9e-33  Score=312.66  Aligned_cols=294  Identities=18%  Similarity=0.350  Sum_probs=258.9

Q ss_pred             CceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCCCEEEEEeCCCe
Q 047260          451 DRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRK  530 (784)
Q Consensus       451 ~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~  530 (784)
                      ..++.+|+.|+.+++|+....                          ..+..+.+|.+.|++++|+  +++|++|+.||.
T Consensus       129 g~~l~sg~~dg~i~vwd~~~~--------------------------~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~  180 (445)
T 2ovr_B          129 GNRIVSGSDDNTLKVWSAVTG--------------------------KCLRTLVGHTGGVWSSQMR--DNIIISGSTDRT  180 (445)
T ss_dssp             TTEEEEEETTSCEEEEETTTC--------------------------CEEEECCCCSSCEEEEEEE--TTEEEEEETTSC
T ss_pred             CCEEEEEECCCcEEEEECCCC--------------------------cEEEEEcCCCCCEEEEEec--CCEEEEEeCCCe
Confidence            456668999999999976322                          2456678899999999998  569999999999


Q ss_pred             EEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEE
Q 047260          531 VVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCF  610 (784)
Q Consensus       531 I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~s  610 (784)
                      |++||+.+++.+..+.+|...|.++.|+  ++.|++|+.||.|++||+.+++ ....+.+|...|.++.|  ++ .++++
T Consensus       181 i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~--~~-~~l~~  254 (445)
T 2ovr_B          181 LKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQ-CLHVLMGHVAAVRCVQY--DG-RRVVS  254 (445)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCC-EEEEEECCSSCEEEEEE--CS-SCEEE
T ss_pred             EEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCc-EEEEEcCCcccEEEEEE--CC-CEEEE
Confidence            9999999999999999999999999995  5689999999999999999876 66778899999999999  33 37888


Q ss_pred             EeCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCC
Q 047260          611 CDNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGD  687 (784)
Q Consensus       611 gs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~  687 (784)
                      ++.|+.|++||+++..++..+.   ..+.++.|  ++..+++++.|+.|++||+++++.+..+.+|...+.++.++  +.
T Consensus       255 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~  330 (445)
T 2ovr_B          255 GAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DN  330 (445)
T ss_dssp             EETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TT
T ss_pred             EcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CC
Confidence            9999999999999888776655   56778888  78899999999999999999999999999999999988875  66


Q ss_pred             EEEEEeCC-eEEEEeCCCCceEEEecc---CCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceEE-e-----cccCC
Q 047260          688 YLASVSQN-LVKVWSMASGECIQELSS---NGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMT-I-----AAHEN  757 (784)
Q Consensus       688 ~Lasgsdd-~I~IwDl~t~~~i~~l~~---~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~-~-----~~h~~  757 (784)
                      +|++++.+ .|++||+++++++..+..   |...|.++.|+  +.+|++++.||.|++||+.+++.+. +     ..|.+
T Consensus       331 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~  408 (445)
T 2ovr_B          331 ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGG  408 (445)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTC
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCc
Confidence            88888855 999999999999999986   77889999996  5699999999999999999998773 3     37889


Q ss_pred             ceEEEEEeCCCCEEEEEECCCc----EEEeC
Q 047260          758 IISALAQSPVTGMVASASHDSS----VKLWK  784 (784)
Q Consensus       758 ~V~slafspdg~~LaSgs~DG~----V~IWd  784 (784)
                      .|.+++|+|++.+|++|+.||.    |.|||
T Consensus       409 ~v~~~~~s~~~~~la~~~~dg~~~~~l~v~d  439 (445)
T 2ovr_B          409 VVWRIRASNTKLVCAVGSRNGTEETKLLVLD  439 (445)
T ss_dssp             EEEEEEECSSEEEEEEECSSSSSCCEEEEEE
T ss_pred             eEEEEEecCCEEEEEEcccCCCCccEEEEEE
Confidence            9999999999999999999998    99996

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.8e-33  Score=335.92  Aligned_cols=288  Identities=17%  Similarity=0.269  Sum_probs=246.2

Q ss_pred             CCCCcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEE
Q 047260          436 GTGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHF  515 (784)
Q Consensus       436 ~~~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~f  515 (784)
                      +|...+.++.+.++...++.+|+.|++|++|+......                     ........+.+|...|++++|
T Consensus       380 ~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~---------------------~~~~~~~~~~~h~~~v~~v~~  438 (694)
T 3dm0_A          380 AHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDK---------------------AYGVAQRRLTGHSHFVEDVVL  438 (694)
T ss_dssp             CCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTT---------------------CSCEEEEEEECCSSCEEEEEE
T ss_pred             cCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCc---------------------ccccccceecCCCCcEEEEEE
Confidence            45555677777777777888999999999998744321                     011245678899999999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCccee--eeccCCCC
Q 047260          516 SSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCS--QAYTGHSS  593 (784)
Q Consensus       516 spdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~--~~~~~h~~  593 (784)
                      +|++++|++|+.||+|+|||+.++..+..+.+|...|++++|+|++++|++|+.|++|+|||+.......  ....+|..
T Consensus       439 s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~  518 (694)
T 3dm0_A          439 SSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRD  518 (694)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSS
T ss_pred             CCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999987543211  22357889


Q ss_pred             CeEEEEEcCCCC-cEEEEEeCCCeEEEEeCCCCeeEEee---cCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEE
Q 047260          594 PIMSLDFHPKKT-DLFCFCDNDNEIQYWSINPFLCTHIT---KGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHS  669 (784)
Q Consensus       594 ~V~sl~~sp~~~-~ll~sgs~dg~I~iwDl~~~~~~~~~---~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~  669 (784)
                      .|.+++|+|++. .++++++.|+.|++||++...+...+   .+.+.+++|+|++.+|++++.|+.|++||+++++.+..
T Consensus       519 ~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~  598 (694)
T 3dm0_A          519 WVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYS  598 (694)
T ss_dssp             CEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEEC
T ss_pred             cEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEE
Confidence            999999999873 58899999999999999987766554   46789999999999999999999999999999998887


Q ss_pred             EeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEEEeccCC-------------------CceEEEEEecCCCEE
Q 047260          670 LQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELSSNG-------------------NQFHSCVFHPSYSTL  730 (784)
Q Consensus       670 l~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~~l~~~~-------------------~~I~sl~fspdg~~L  730 (784)
                      +. +...|.+++|+|++.+|++++++.|+|||+++++++..+..+.                   ..+.+++|+|++++|
T Consensus       599 ~~-~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l  677 (694)
T 3dm0_A          599 LE-ANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTL  677 (694)
T ss_dssp             CB-CSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEE
T ss_pred             ec-CCCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEE
Confidence            76 4568999999999999999999999999999999888775331                   136889999999999


Q ss_pred             EEEECCCeEEEEECC
Q 047260          731 LVVGGISSLELWNMA  745 (784)
Q Consensus       731 ~s~s~dg~I~Iwdl~  745 (784)
                      ++++.||.|+|||+.
T Consensus       678 ~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          678 FSGYTDGVIRVWGIG  692 (694)
T ss_dssp             EEEETTSEEEEEEC-
T ss_pred             EEEcCCCeEEEEecc
Confidence            999999999999985

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.2e-35  Score=339.75  Aligned_cols=307  Identities=11%  Similarity=0.052  Sum_probs=230.3

Q ss_pred             eEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCC------CCEEEEEe
Q 047260          453 FADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSD------GKLLASSG  526 (784)
Q Consensus       453 ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspd------g~~Lasgs  526 (784)
                      ++++++.|++|++|+......                      .......+.+|.+.|.+++|+|+      +.+||+++
T Consensus       175 ~laS~s~D~tI~iWd~~~~~~----------------------~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s  232 (524)
T 2j04_B          175 MFDKEKHSSCIQIFKMNTSTL----------------------HCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVS  232 (524)
T ss_dssp             -------CEEEEEEEEETTTC----------------------CEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEE
T ss_pred             hhccCCCCceEEEEEccCCCC----------------------CceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEe
Confidence            345788999999998743220                      11123456778999999999997      57999999


Q ss_pred             CCCeEEEEECCCCce-----------eeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCe
Q 047260          527 HDRKVVLWNMDTLQT-----------ESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPI  595 (784)
Q Consensus       527 ~Dg~I~IWd~~t~~~-----------~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V  595 (784)
                      .||+|+|||+.++..           ...+.+|...|++++|++++ .|++|+.||+|++||++++......+.+|...|
T Consensus       233 ~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V  311 (524)
T 2j04_B          233 QEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYI  311 (524)
T ss_dssp             TTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCE
T ss_pred             cCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccE
Confidence            999999999986542           23667899999999999864 899999999999999997654556678999999


Q ss_pred             EEE--EEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEe---ec--CCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEE
Q 047260          596 MSL--DFHPKKTDLFCFCDNDNEIQYWSINPFLCTHI---TK--GGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTH  668 (784)
Q Consensus       596 ~sl--~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~---~~--~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~  668 (784)
                      .+|  .|++++..+|++++.|+.|++||+++.++...   +.  ..+.+++|+|++..+++++.|++|++||++++.++.
T Consensus       312 ~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~  391 (524)
T 2j04_B          312 LSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVH  391 (524)
T ss_dssp             EEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCE
T ss_pred             EEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccce
Confidence            999  56777646999999999999999987554322   22  247889999999999999999999999999998888


Q ss_pred             EEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEecc-----CCCceEEEEEecCCCEEEEEECCCeEEEE
Q 047260          669 SLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSS-----NGNQFHSCVFHPSYSTLLVVGGISSLELW  742 (784)
Q Consensus       669 ~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~-----~~~~I~sl~fspdg~~L~s~s~dg~I~Iw  742 (784)
                      .+.+|...|++|+|+|+|.+|++|++| +|+|||+... .+..+..     +...+.+++|+|++..+ ....+-.+..|
T Consensus       392 ~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~-~~~~~~~~~~~  469 (524)
T 2j04_B          392 PLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKY-RIDSSYEVYPL  469 (524)
T ss_dssp             EEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEE-EECCCCCCCC-
T ss_pred             eeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeE-EccCCceeccc
Confidence            899999999999999999999999966 9999998654 2222111     11246789999999844 22222223333


Q ss_pred             ECCCCceEEecccCCceEEEEEeCCCC---EEEEEECCCcEEEeC
Q 047260          743 NMAENKSMTIAAHENIISALAQSPVTG---MVASASHDSSVKLWK  784 (784)
Q Consensus       743 dl~~~~~~~~~~h~~~V~slafspdg~---~LaSgs~DG~V~IWd  784 (784)
                      +........+.+|...|.+|+|+|++.   .||+|+.||.|+||+
T Consensus       470 ~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~  514 (524)
T 2j04_B          470 TVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEY  514 (524)
T ss_dssp             ------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEE
T ss_pred             ccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEE
Confidence            333444457889999999999999964   999999999999995

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=3.2e-33  Score=310.72  Aligned_cols=299  Identities=18%  Similarity=0.322  Sum_probs=237.2

Q ss_pred             CCCcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEc
Q 047260          437 TGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFS  516 (784)
Q Consensus       437 ~~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fs  516 (784)
                      +...+.++.|.++...++ +|+ ++.+++|+..++.....    +.........    ...........+...|++++|+
T Consensus        63 h~~~V~~v~fspdg~~la-~g~-~~~v~i~~~~~g~~~~~----l~~~~~~~~~----~~~~~~~~~~~~~~~v~~v~~s  132 (393)
T 1erj_A           63 HTSVVCCVKFSNDGEYLA-TGC-NKTTQVYRVSDGSLVAR----LSDDSAANKD----PENLNTSSSPSSDLYIRSVCFS  132 (393)
T ss_dssp             CSSCCCEEEECTTSSEEE-EEC-BSCEEEEETTTCCEEEE----ECC---------------------CCCCBEEEEEEC
T ss_pred             CCCEEEEEEECCCCCEEE-EEc-CCcEEEEEecCCCEEEE----ecCccccccc----cccccccccCCCceeEEEEEEC
Confidence            445567778878766554 565 78999998754431111    1110000000    0000111122355679999999


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeE
Q 047260          517 SDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIM  596 (784)
Q Consensus       517 pdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~  596 (784)
                      |+|++|++|+.|+.|+|||+.+++.+..+.+|...|++++|+|++++|++++.|++|++||++++. +...+ .+...+.
T Consensus       133 ~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~-~~~~~-~~~~~v~  210 (393)
T 1erj_A          133 PDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ-CSLTL-SIEDGVT  210 (393)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-EEEEE-ECSSCEE
T ss_pred             CCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCe-eEEEE-EcCCCcE
Confidence            999999999999999999999999999999999999999999999999999999999999999876 33333 3567899


Q ss_pred             EEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEee----------cCCeeEEEEecCCCEEEEEECCCcEEEEECCCC--
Q 047260          597 SLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHIT----------KGGTAQVRFQPRIGQLLAAASDKVVSIFDIETD--  664 (784)
Q Consensus       597 sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~----------~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~--  664 (784)
                      +++|+|....++++++.|+.|++||+++...+..+          ...+.+++|+|++.+|++++.|+.|++||+++.  
T Consensus       211 ~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~  290 (393)
T 1erj_A          211 TVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN  290 (393)
T ss_dssp             EEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-----
T ss_pred             EEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCC
Confidence            99999955568999999999999999987665443          467899999999999999999999999999763  


Q ss_pred             ----------eEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEec------CC
Q 047260          665 ----------RQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHP------SY  727 (784)
Q Consensus       665 ----------~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fsp------dg  727 (784)
                                .+...+.+|...|.+++|+|++.+|++++.| .|++||+.+++++..+.+|...|.+++|++      ++
T Consensus       291 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~  370 (393)
T 1erj_A          291 KSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEY  370 (393)
T ss_dssp             ----------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTC
T ss_pred             cccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCC
Confidence                      3456778899999999999999999999966 999999999999999999999999999986      67


Q ss_pred             CEEEEEECCCeEEEEECCCC
Q 047260          728 STLLVVGGISSLELWNMAEN  747 (784)
Q Consensus       728 ~~L~s~s~dg~I~Iwdl~~~  747 (784)
                      .+|++++.||+|+||++...
T Consensus       371 ~~l~sgs~Dg~i~iW~~~~~  390 (393)
T 1erj_A          371 NVFATGSGDCKARIWKYKKI  390 (393)
T ss_dssp             EEEEEEETTSEEEEEEEEEC
T ss_pred             CEEEEECCCCcEEECccccc
Confidence            89999999999999997643

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.4e-32  Score=310.53  Aligned_cols=297  Identities=18%  Similarity=0.263  Sum_probs=255.7

Q ss_pred             ceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeE
Q 047260          452 RFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKV  531 (784)
Q Consensus       452 ~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I  531 (784)
                      .++.+|+.|+.|++|+....                          ..+..+.+|.+.|++++|++++ +|++|+.||+|
T Consensus       133 ~~l~sgs~dg~i~vwd~~~~--------------------------~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i  185 (464)
T 3v7d_B          133 NYVITGADDKMIRVYDSINK--------------------------KFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTV  185 (464)
T ss_dssp             TEEEEEETTSCEEEEETTTT--------------------------EEEEEECCCSSCEEEEEECSTT-EEEEEETTSCE
T ss_pred             CEEEEEcCCCcEEEEECCCC--------------------------cEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCE
Confidence            46678999999999976322                          3566778999999999999988 99999999999


Q ss_pred             EEEECCCCceeeecCCCCCCeEEEEEcc--CCCEEEEEeCCCeEEEEcCCCCcce----------------------eee
Q 047260          532 VLWNMDTLQTESTPEDHKSVVTDVRFRP--NSSQLATASVDKSVRLWDAANPNFC----------------------SQA  587 (784)
Q Consensus       532 ~IWd~~t~~~~~~l~~h~~~It~i~fsp--dg~~Latgs~Dg~I~IWdl~~~~~~----------------------~~~  587 (784)
                      +|||+.+++.+..+.+|...|.+++|++  ++.+|++++.|++|++||+.+....                      ...
T Consensus       186 ~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (464)
T 3v7d_B          186 RVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV  265 (464)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEE
T ss_pred             EEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEE
Confidence            9999999999999999999999999994  7789999999999999999875422                      445


Q ss_pred             ccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEEEECCCcEEEEECCCC
Q 047260          588 YTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLAAASDKVVSIFDIETD  664 (784)
Q Consensus       588 ~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~  664 (784)
                      +.+|...|.++..  ++. ++++++.|+.|++||+++.+++..+.   ..+.+++|+|++..+++++.|+.|++||++++
T Consensus       266 ~~~~~~~v~~~~~--~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~  342 (464)
T 3v7d_B          266 LRGHMASVRTVSG--HGN-IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG  342 (464)
T ss_dssp             ECCCSSCEEEEEE--ETT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT
T ss_pred             ccCccceEEEEcC--CCC-EEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Confidence            6788889988854  443 88899999999999999988876654   67899999999999999999999999999999


Q ss_pred             eEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEE
Q 047260          665 RQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWN  743 (784)
Q Consensus       665 ~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwd  743 (784)
                      +.+..+.+|...|.+++|+  +.+|++++.+ .|++||+.++.....+. +...+..++|++++.++++++ ||.|++||
T Consensus       343 ~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd  418 (464)
T 3v7d_B          343 ELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS-ENQFNIYN  418 (464)
T ss_dssp             EEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEE-TTEEEEEE
T ss_pred             cEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEec-CCeEEEEE
Confidence            9999999999999999997  5788888855 99999999988766663 556788899999999999888 89999999


Q ss_pred             CCCCceEE--ecccCCceEEEEEeCCCCEEEEEECCCcEEEe
Q 047260          744 MAENKSMT--IAAHENIISALAQSPVTGMVASASHDSSVKLW  783 (784)
Q Consensus       744 l~~~~~~~--~~~h~~~V~slafspdg~~LaSgs~DG~V~IW  783 (784)
                      +.+++.+.  ...|...|.+++|+ +..++++++.||.+.+|
T Consensus       419 ~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~  459 (464)
T 3v7d_B          419 LRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLE  459 (464)
T ss_dssp             TTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred             CCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEE
Confidence            99999884  56889999999998 34566666777766654

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=9.2e-34  Score=359.15  Aligned_cols=320  Identities=20%  Similarity=0.372  Sum_probs=275.2

Q ss_pred             CCCCcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEE
Q 047260          436 GTGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHF  515 (784)
Q Consensus       436 ~~~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~f  515 (784)
                      ++...+.+..+.++...+ .+|+.|+.|++|+....                          ..+..+.+|.+.|++++|
T Consensus       613 ~h~~~v~~~~~s~~~~~l-~s~~~d~~i~vw~~~~~--------------------------~~~~~~~~h~~~v~~~~~  665 (1249)
T 3sfz_A          613 PHTDAVYHACFSQDGQRI-ASCGADKTLQVFKAETG--------------------------EKLLDIKAHEDEVLCCAF  665 (1249)
T ss_dssp             CCSSCEEEEEECTTSSEE-EEEETTSCEEEEETTTC--------------------------CEEEEECCCSSCEEEEEE
T ss_pred             cccccEEEEEECCCCCEE-EEEeCCCeEEEEECCCC--------------------------CEEEEeccCCCCEEEEEE
Confidence            444556677777765554 57889999999976332                          245667899999999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEcc--CCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCC
Q 047260          516 SSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRP--NSSQLATASVDKSVRLWDAANPNFCSQAYTGHSS  593 (784)
Q Consensus       516 spdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fsp--dg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~  593 (784)
                      +|++++||+|+.||.|+|||+.+++.+..+.+|...|++++|+|  ++.++++|+.|+.|++||+.++. +...+.+|..
T Consensus       666 s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~-~~~~~~~h~~  744 (1249)
T 3sfz_A          666 SSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE-CRNTMFGHTN  744 (1249)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSS-EEEEECCCSS
T ss_pred             ecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcc-hhheecCCCC
Confidence            99999999999999999999999999999999999999999999  56689999999999999999876 6777889999


Q ss_pred             CeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEe-------------------------------------------
Q 047260          594 PIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHI-------------------------------------------  630 (784)
Q Consensus       594 ~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~-------------------------------------------  630 (784)
                      .|.+++|+|++. ++++++.||.|++||+++......                                           
T Consensus       745 ~v~~~~~sp~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~  823 (1249)
T 3sfz_A          745 SVNHCRFSPDDE-LLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLL  823 (1249)
T ss_dssp             CEEEEEECSSTT-EEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEE
T ss_pred             CEEEEEEecCCC-EEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEE
Confidence            999999999987 788899999999999875433221                                           


Q ss_pred             ---------------ecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC
Q 047260          631 ---------------TKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN  695 (784)
Q Consensus       631 ---------------~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd  695 (784)
                                     +...+.+++|+|++..+++++.|+.|++||+.++..+..+.+|...|.+++|+|++.+|++++.+
T Consensus       824 ~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~d  903 (1249)
T 3sfz_A          824 FDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDD  903 (1249)
T ss_dssp             EETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCC
Confidence                           23467788999999999999999999999999999999999999999999999999999999866


Q ss_pred             -eEEEEeCCCCce-----------------------------EEEe--------ccCCCceEEEEEecCCCEEEEEECCC
Q 047260          696 -LVKVWSMASGEC-----------------------------IQEL--------SSNGNQFHSCVFHPSYSTLLVVGGIS  737 (784)
Q Consensus       696 -~I~IwDl~t~~~-----------------------------i~~l--------~~~~~~I~sl~fspdg~~L~s~s~dg  737 (784)
                       .|++||+.+...                             +..+        ..+...+.+++|+|++.++++++.+|
T Consensus       904 g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g  983 (1249)
T 3sfz_A          904 QTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDG  983 (1249)
T ss_dssp             SCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTS
T ss_pred             CeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCC
Confidence             999999753100                             0000        12345789999999999999999999


Q ss_pred             eEEEEECCCCceE-EecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          738 SLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       738 ~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      .|++||+.+++.. .+.+|...|++++|+|++++|++++.||.|++||
T Consensus       984 ~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd 1031 (1249)
T 3sfz_A          984 AIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWN 1031 (1249)
T ss_dssp             CCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEE
T ss_pred             CEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEE
Confidence            9999999998876 6678999999999999999999999999999996

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.4e-34  Score=325.90  Aligned_cols=282  Identities=20%  Similarity=0.288  Sum_probs=228.9

Q ss_pred             EeEeecCCCceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCce--eeecCCCCCCeEEEEEcc-CCCEEEEEeCCCeEEE
Q 047260          500 VGCIRSRNSKVTCCHFSS-DGKLLASSGHDRKVVLWNMDTLQT--ESTPEDHKSVVTDVRFRP-NSSQLATASVDKSVRL  575 (784)
Q Consensus       500 i~~l~~H~~~V~~l~fsp-dg~~Lasgs~Dg~I~IWd~~t~~~--~~~l~~h~~~It~i~fsp-dg~~Latgs~Dg~I~I  575 (784)
                      .....+|...|+||+|+| ++++||+|+.||.|+|||+.++..  ...+.+|.+.|++|+|+| ++.+|++|+.||+|+|
T Consensus       112 ~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~i  191 (435)
T 4e54_B          112 LQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRL  191 (435)
T ss_dssp             CCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEE
T ss_pred             cccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEE
Confidence            345677999999999999 567999999999999999987654  445668999999999998 7899999999999999


Q ss_pred             EcCCCCcceeeec--cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCee--EEeecCCeeEEEEecCCC-EEEEE
Q 047260          576 WDAANPNFCSQAY--TGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLC--THITKGGTAQVRFQPRIG-QLLAA  650 (784)
Q Consensus       576 Wdl~~~~~~~~~~--~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~--~~~~~~~v~~v~fsp~~~-~Ll~~  650 (784)
                      ||+++.. .....  ..+...+.+++|+|++. +|++|+.||.|++||++....  +..+...|.+++|+|++. .++++
T Consensus       192 wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~  269 (435)
T 4e54_B          192 QDFKGNI-LRVFASSDTINIWFCSLDVSASSR-MVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATA  269 (435)
T ss_dssp             EETTSCE-EEEEECCSSCSCCCCCEEEETTTT-EEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEE
T ss_pred             eeccCCc-eeEEeccCCCCccEEEEEECCCCC-EEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEe
Confidence            9998654 22222  23445688999999987 888999999999999975332  234557899999999987 56678


Q ss_pred             ECCCcEEEEECCCCeEEEE---EeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCC------ceEE
Q 047260          651 ASDKVVSIFDIETDRQTHS---LQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGN------QFHS  720 (784)
Q Consensus       651 s~Dg~I~IwDl~t~~~i~~---l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~------~I~s  720 (784)
                      +.|+.|+|||+++.+....   ..+|...|++++|+|+|.+|++++.| .|+|||+.++++...+..|..      .+..
T Consensus       270 s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  349 (435)
T 4e54_B          270 SVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIK  349 (435)
T ss_dssp             ETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCB
T ss_pred             cCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEE
Confidence            8899999999988654333   35699999999999999999999865 999999999988888766543      2345


Q ss_pred             EEEecCCCEEEEEEC------------CCeEEEEECCCCceE-Ee-cccCCceEEE-EEeCCCCEEEEEECCCcEEEeC
Q 047260          721 CVFHPSYSTLLVVGG------------ISSLELWNMAENKSM-TI-AAHENIISAL-AQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       721 l~fspdg~~L~s~s~------------dg~I~Iwdl~~~~~~-~~-~~h~~~V~sl-afspdg~~LaSgs~DG~V~IWd  784 (784)
                      +.|+|++..++++..            ++.|++||..+++.+ .+ ..|...|.++ +|+|++.+|++|+ |+.|+|||
T Consensus       350 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~  427 (435)
T 4e54_B          350 AAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWS  427 (435)
T ss_dssp             CEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECC
T ss_pred             EEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEE
Confidence            678888877777653            247999999999887 33 4688888887 6999999999876 88999997

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=6.6e-33  Score=310.57  Aligned_cols=269  Identities=20%  Similarity=0.374  Sum_probs=233.8

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeec--CCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceee
Q 047260          509 KVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTP--EDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQ  586 (784)
Q Consensus       509 ~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l--~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~  586 (784)
                      .+++|+||++ ++||+|. |++|+|||+.+++....+  .+|...|++|+|+|++++|++|+.||+|+|||+++++ ...
T Consensus       107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~-~~~  183 (420)
T 4gga_A          107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK-RLR  183 (420)
T ss_dssp             TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-EEE
T ss_pred             cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc-EEE
Confidence            3678999975 5788765 999999999999887655  4678899999999999999999999999999999876 677


Q ss_pred             eccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCee----EEeecCCeeEEEEecCCCEEEEEECCCcEEEEECC
Q 047260          587 AYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLC----THITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIE  662 (784)
Q Consensus       587 ~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~----~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~  662 (784)
                      .+.+|...|.++.+++   .++++++.|+.+++||......    +..+...+..+.++|++..+++++.|+.|++||..
T Consensus       184 ~~~~h~~~v~~~s~~~---~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~  260 (420)
T 4gga_A          184 NMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSA  260 (420)
T ss_dssp             EECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESS
T ss_pred             EEeCCCCceEEEeeCC---CEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeec
Confidence            8889999999999874   3899999999999999886322    23455788999999999999999999999999998


Q ss_pred             CCe----EEEEEeCCCCCEEEEEEcCCCC-EEEEEe---CCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEE
Q 047260          663 TDR----QTHSLQGHAELVNYICWDTNGD-YLASVS---QNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVG  734 (784)
Q Consensus       663 t~~----~i~~l~~h~~~V~sl~~spdg~-~Lasgs---dd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s  734 (784)
                      +++    .+.....|...|.+++|+|++. ++++++   |++|+|||+.+++++..+..+ ..+.++.|++++..+++++
T Consensus       261 ~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~s  339 (420)
T 4gga_A          261 PGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGH  339 (420)
T ss_dssp             CCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEE
T ss_pred             cccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEE
Confidence            764    4566778999999999999654 555543   459999999999999888765 6789999999999998876


Q ss_pred             --CCCeEEEEECCCCceE-EecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          735 --GISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       735 --~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                        .|+.|+|||+.+++++ .+.+|.+.|++|+|+||+.+|+||+.||+|+|||
T Consensus       340 g~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWd  392 (420)
T 4gga_A          340 GFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR  392 (420)
T ss_dssp             CTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred             ecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence              5799999999999887 7789999999999999999999999999999997

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.3e-33  Score=310.85  Aligned_cols=278  Identities=18%  Similarity=0.299  Sum_probs=240.6

Q ss_pred             EeEeecCCCceE--EEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCC-CCCCeEEEEEccCCCEEEEEeCCCeEEEE
Q 047260          500 VGCIRSRNSKVT--CCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPED-HKSVVTDVRFRPNSSQLATASVDKSVRLW  576 (784)
Q Consensus       500 i~~l~~H~~~V~--~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~-h~~~It~i~fspdg~~Latgs~Dg~I~IW  576 (784)
                      +....+|...+.  +++|+  +..+++++.|+.|+|||+.+++....+.. |...|++++|+|++++|++|+.||.|++|
T Consensus        84 ~~~~~~~~~~~~~~~~~~s--~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw  161 (401)
T 4aez_A           84 VLDAPGIIDDYYLNLLDWS--NLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIY  161 (401)
T ss_dssp             EEECTTCCCCTTCBCEEEC--TTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             eeeCCCCcCCceEEEEeec--CCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEE
Confidence            333446766644  45555  45688889999999999999988877765 88999999999999999999999999999


Q ss_pred             cCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCC-CeeE---EeecCCeeEEEEecCCCEEEEEEC
Q 047260          577 DAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINP-FLCT---HITKGGTAQVRFQPRIGQLLAAAS  652 (784)
Q Consensus       577 dl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~-~~~~---~~~~~~v~~v~fsp~~~~Ll~~s~  652 (784)
                      |+.+++ ....+.+|...|.+++|++   .++++++.||.|++||++. ....   ..+...+.+++|+|++..|++++.
T Consensus       162 d~~~~~-~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~  237 (401)
T 4aez_A          162 DVESQT-KLRTMAGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGN  237 (401)
T ss_dssp             ETTTCC-EEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             ECcCCe-EEEEecCCCCceEEEEECC---CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeC
Confidence            999876 6677789999999999954   3899999999999999983 3333   345578999999999999999999


Q ss_pred             CCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCC-CEEEEEe---CCeEEEEeCCCCceEEEeccCCCceEEEEEecCCC
Q 047260          653 DKVVSIFDIETDRQTHSLQGHAELVNYICWDTNG-DYLASVS---QNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYS  728 (784)
Q Consensus       653 Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg-~~Lasgs---dd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~  728 (784)
                      |+.|++||+++++.+..+..|...|.+++|+|++ .++++++   ++.|++||+.+++++..+. +...|.+++|+|++.
T Consensus       238 d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~  316 (401)
T 4aez_A          238 DNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSK  316 (401)
T ss_dssp             TSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSS
T ss_pred             CCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCC
Confidence            9999999999999999999999999999999976 5666665   5599999999999998886 557899999999999


Q ss_pred             EEEEEE--CCCeEEEEECCCCceE---EecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          729 TLLVVG--GISSLELWNMAENKSM---TIAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       729 ~L~s~s--~dg~I~Iwdl~~~~~~---~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      +|++++  .||.|++||+.++...   .+.+|...|.+++|+|++.+|++++.||.|+|||
T Consensus       317 ~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~  377 (401)
T 4aez_A          317 EIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWR  377 (401)
T ss_dssp             EEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEE
T ss_pred             eEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence            999965  7999999999987654   4668999999999999999999999999999996

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.5e-33  Score=344.41  Aligned_cols=200  Identities=12%  Similarity=0.101  Sum_probs=165.9

Q ss_pred             CCcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcC
Q 047260          438 GSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSS  517 (784)
Q Consensus       438 ~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fsp  517 (784)
                      ..-+.+..|.++. .++++|+.|+.|++|+....                          ..+ ....|...|++++|+|
T Consensus        17 ~~~V~~lafspdg-~~lAsgs~Dg~I~lw~~~~~--------------------------~~~-~~~~~~~~V~~l~fsp   68 (902)
T 2oaj_A           17 SSKPIAAAFDFTQ-NLLAIATVTGEVHIYGQQQV--------------------------EVV-IKLEDRSAIKEMRFVK   68 (902)
T ss_dssp             SSCEEEEEEETTT-TEEEEEETTSEEEEECSTTC--------------------------EEE-EECSSCCCEEEEEEET
T ss_pred             CCCcEEEEECCCC-CEEEEEeCCCEEEEEeCCCc--------------------------EEE-EEcCCCCCEEEEEEcC
Confidence            3446677777765 45668999999999954110                          111 1234788999999999


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCccee----------ee
Q 047260          518 DGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCS----------QA  587 (784)
Q Consensus       518 dg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~----------~~  587 (784)
                       +++|++++.|++|+|||+.+++.+..+. |...|++++|+|++++|++|+.||+|++||+++.....          ..
T Consensus        69 -g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~  146 (902)
T 2oaj_A           69 -GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFF  146 (902)
T ss_dssp             -TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTC
T ss_pred             -CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccc
Confidence             8899999999999999999999888885 77899999999999999999999999999999865321          23


Q ss_pred             ccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---------------------CCeeEEEEecCCCE
Q 047260          588 YTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK---------------------GGTAQVRFQPRIGQ  646 (784)
Q Consensus       588 ~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---------------------~~v~~v~fsp~~~~  646 (784)
                      +.+|.+.|.+++|+|++..++++++.|+.| +||+++.+++..+.                     ..+.+++|+|++.+
T Consensus       147 ~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~  225 (902)
T 2oaj_A          147 PAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLH  225 (902)
T ss_dssp             SSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSE
T ss_pred             cccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCE
Confidence            467999999999999876788999999999 99999988776554                     45899999999999


Q ss_pred             EEEEECCCcEEEEECCCCeEEE
Q 047260          647 LLAAASDKVVSIFDIETDRQTH  668 (784)
Q Consensus       647 Ll~~s~Dg~I~IwDl~t~~~i~  668 (784)
                      |++++.|+.|++||+++++++.
T Consensus       226 lasgs~Dg~i~lWd~~~g~~~~  247 (902)
T 2oaj_A          226 IITIHEDNSLVFWDANSGHMIM  247 (902)
T ss_dssp             EEEEETTCCEEEEETTTCCEEE
T ss_pred             EEEEECCCeEEEEECCCCcEEE
Confidence            9999999999999998766543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=2.6e-33  Score=338.58  Aligned_cols=318  Identities=17%  Similarity=0.275  Sum_probs=271.6

Q ss_pred             CcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCC
Q 047260          439 SLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSD  518 (784)
Q Consensus       439 ~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspd  518 (784)
                      ..+.++.+.++... +.+|+.|+.|.+|+....                          ..+..+.+|.+.|++++|+|+
T Consensus        14 ~~v~~i~~sp~~~~-la~~~~~g~v~iwd~~~~--------------------------~~~~~~~~~~~~v~~~~~s~~   66 (814)
T 3mkq_A           14 DRVKGIDFHPTEPW-VLTTLYSGRVEIWNYETQ--------------------------VEVRSIQVTETPVRAGKFIAR   66 (814)
T ss_dssp             SCEEEEEECSSSSE-EEEEETTSEEEEEETTTT--------------------------EEEEEEECCSSCEEEEEEEGG
T ss_pred             CceEEEEECCCCCE-EEEEeCCCEEEEEECCCC--------------------------ceEEEEecCCCcEEEEEEeCC
Confidence            34566667676554 456888999999976321                          245677889999999999999


Q ss_pred             CCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEE
Q 047260          519 GKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSL  598 (784)
Q Consensus       519 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl  598 (784)
                      +++|++|+.||.|+|||+.+++.+..+..|...|++++|+|++++|++++.||.|++||+.++......+.+|...|.++
T Consensus        67 ~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~  146 (814)
T 3mkq_A           67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCV  146 (814)
T ss_dssp             GTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEE
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999998766778888999999999


Q ss_pred             EEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec----CCeeEEEEec--CCCEEEEEECCCcEEEEECCCCeEEEEEeC
Q 047260          599 DFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK----GGTAQVRFQP--RIGQLLAAASDKVVSIFDIETDRQTHSLQG  672 (784)
Q Consensus       599 ~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~----~~v~~v~fsp--~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~  672 (784)
                      +|+|++..++++++.||.|++||++.........    ..+.+++|+|  ++..+++++.||.|++||+++++.+..+.+
T Consensus       147 ~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~  226 (814)
T 3mkq_A          147 AFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG  226 (814)
T ss_dssp             EEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEEC
T ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcC
Confidence            9999555588999999999999998654443332    6789999999  999999999999999999999999999999


Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCCCE-EEEEECCCeEEEEECCCCceE
Q 047260          673 HAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYST-LLVVGGISSLELWNMAENKSM  750 (784)
Q Consensus       673 h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~-L~s~s~dg~I~Iwdl~~~~~~  750 (784)
                      |...|.+++|+|++.+|++++.+ .|++||+.+++.+..+..+...+.+++|+|++.. +++++.++.+.+|++......
T Consensus       227 ~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (814)
T 3mkq_A          227 HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPT  306 (814)
T ss_dssp             CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCC
T ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCce
Confidence            99999999999999999999855 9999999999999999999999999999999874 355666777888887643211


Q ss_pred             --------------------------------------------EecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          751 --------------------------------------------TIAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       751 --------------------------------------------~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                                                                  ....+...+.+++|+|++++|++++ ||.+.||+
T Consensus       307 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~  383 (814)
T 3mkq_A          307 LSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYT  383 (814)
T ss_dssp             EEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEE
T ss_pred             eEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEE
Confidence                                                        1123445678999999999999888 88899885

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.2e-33  Score=304.45  Aligned_cols=272  Identities=16%  Similarity=0.137  Sum_probs=237.4

Q ss_pred             EeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc---eeeecCCCCCCeEEEEEccCCC-EEEEEeCCCeEEE
Q 047260          500 VGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQ---TESTPEDHKSVVTDVRFRPNSS-QLATASVDKSVRL  575 (784)
Q Consensus       500 i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~---~~~~l~~h~~~It~i~fspdg~-~Latgs~Dg~I~I  575 (784)
                      +....+|.+.|++++|+|++++|++++.||.|+|||+.++.   ....+..|...|++++|+|+++ +|++++.||.|++
T Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~   83 (342)
T 1yfq_A            4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK   83 (342)
T ss_dssp             EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred             eecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEE
Confidence            33456799999999999999999999999999999998877   3445558999999999999999 9999999999999


Q ss_pred             EcC-CCCcceeeeccC--CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCC---------CeeEEe--ecCCeeEEEEe
Q 047260          576 WDA-ANPNFCSQAYTG--HSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINP---------FLCTHI--TKGGTAQVRFQ  641 (784)
Q Consensus       576 Wdl-~~~~~~~~~~~~--h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~---------~~~~~~--~~~~v~~v~fs  641 (784)
                      ||+ .++.  ...+.+  |...|.+++|+| + .++++++.|+.|++||+++         .+++..  +...+.+++|+
T Consensus        84 wd~~~~~~--~~~~~~~~~~~~v~~l~~~~-~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  159 (342)
T 1yfq_A           84 VDLIGSPS--FQALTNNEANLGICRICKYG-D-DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTN  159 (342)
T ss_dssp             ECSSSSSS--EEECBSCCCCSCEEEEEEET-T-TEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEEC
T ss_pred             EEeccCCc--eEeccccCCCCceEEEEeCC-C-CEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEec
Confidence            999 7765  356677  999999999999 4 4888999999999999876         443322  45788999999


Q ss_pred             cCCCEEEEEECCCcEEEEECCC-Ce--EEEEEeCCCCCEEEEEEcC-CCCEEEEEeCC-eEEEEeCCCC------ceEEE
Q 047260          642 PRIGQLLAAASDKVVSIFDIET-DR--QTHSLQGHAELVNYICWDT-NGDYLASVSQN-LVKVWSMASG------ECIQE  710 (784)
Q Consensus       642 p~~~~Ll~~s~Dg~I~IwDl~t-~~--~i~~l~~h~~~V~sl~~sp-dg~~Lasgsdd-~I~IwDl~t~------~~i~~  710 (784)
                      +++  +++++.|+.|++||+++ +.  .......|...|.+++|+| ++.+|++++.+ .|+|||+...      +.+..
T Consensus       160 ~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~  237 (342)
T 1yfq_A          160 SSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFA  237 (342)
T ss_dssp             SSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEE
T ss_pred             CCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccccccee
Confidence            886  99999999999999998 53  3344456888999999999 99999999866 9999999887      78888


Q ss_pred             eccCCC---------ceEEEEEecCCCEEEEEECCCeEEEEECCCCceE-Eeccc-CCceEEEEEeCCCCEEEEEECCCc
Q 047260          711 LSSNGN---------QFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM-TIAAH-ENIISALAQSPVTGMVASASHDSS  779 (784)
Q Consensus       711 l~~~~~---------~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h-~~~V~slafspdg~~LaSgs~DG~  779 (784)
                      +..|..         .|.+++|+|++++|++++.||.|++||+.+++.+ .+..| ...|.+++  |++.+|++++.||.
T Consensus       238 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~  315 (342)
T 1yfq_A          238 FRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDT  315 (342)
T ss_dssp             EECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred             eecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCc
Confidence            888755         9999999999999999999999999999998877 66677 99999999  99999999999998

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.9e-33  Score=304.44  Aligned_cols=285  Identities=17%  Similarity=0.237  Sum_probs=238.6

Q ss_pred             ceeEEeEeecCCCceEEEEEcCC---CCEEEEEeCCCeEEEEECCC-Ccee-eecCCCCCCeEEEEEccCCCEEEEEeCC
Q 047260          496 TFCEVGCIRSRNSKVTCCHFSSD---GKLLASSGHDRKVVLWNMDT-LQTE-STPEDHKSVVTDVRFRPNSSQLATASVD  570 (784)
Q Consensus       496 ~~~~i~~l~~H~~~V~~l~fspd---g~~Lasgs~Dg~I~IWd~~t-~~~~-~~l~~h~~~It~i~fspdg~~Latgs~D  570 (784)
                      ++..+..+.+|.+.|+|++|+|+   |++|++|+.||.|+|||+.+ +..+ ..+.+|...|++++|+|++++|++++.|
T Consensus        28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d  107 (368)
T 3mmy_A           28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCD  107 (368)
T ss_dssp             TTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETT
T ss_pred             CcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCC
Confidence            44567788999999999999999   69999999999999999997 5544 7788999999999999999999999999


Q ss_pred             CeEEEEcCCCCcceeeeccCCCCCeEEEEE--cCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCCeeEEEEecCCCEEE
Q 047260          571 KSVRLWDAANPNFCSQAYTGHSSPIMSLDF--HPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLL  648 (784)
Q Consensus       571 g~I~IWdl~~~~~~~~~~~~h~~~V~sl~~--sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v~~v~fsp~~~~Ll  648 (784)
                      |.|++||++++. .. .+..|...|.+++|  ++++. +|++++.|+.|++||+++.+.+..+......+++......++
T Consensus       108 g~v~iwd~~~~~-~~-~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (368)
T 3mmy_A          108 KTAKMWDLSSNQ-AI-QIAQHDAPVKTIHWIKAPNYS-CVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAV  184 (368)
T ss_dssp             SEEEEEETTTTE-EE-EEEECSSCEEEEEEEECSSCE-EEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEE
T ss_pred             CcEEEEEcCCCC-ce-eeccccCceEEEEEEeCCCCC-EEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeE
Confidence            999999999876 33 35679999999999  77765 788899999999999998877776665555555555567899


Q ss_pred             EEECCCcEEEEECCCCeEEEEEe--CCCCCEEEEEEcCCCCE----EEEEeCC-eEEEEeCCCC---ceEEEeccCCC--
Q 047260          649 AAASDKVVSIFDIETDRQTHSLQ--GHAELVNYICWDTNGDY----LASVSQN-LVKVWSMASG---ECIQELSSNGN--  716 (784)
Q Consensus       649 ~~s~Dg~I~IwDl~t~~~i~~l~--~h~~~V~sl~~spdg~~----Lasgsdd-~I~IwDl~t~---~~i~~l~~~~~--  716 (784)
                      +++.++.+.+||++.........  .+...+.++++.++...    +++++.+ .|++||++..   ..+..+..|..  
T Consensus       185 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~  264 (368)
T 3mmy_A          185 VATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNG  264 (368)
T ss_dssp             EEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC-
T ss_pred             EEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeeccc
Confidence            99999999999998875443322  24456677777665543    7777755 9999999987   56777777765  


Q ss_pred             ----------ceEEEEEecCCCEEEEEECCCeEEEEECCCCceE-EecccCCceEEEEEeCCCCEEEEEECCCcEEEe
Q 047260          717 ----------QFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLW  783 (784)
Q Consensus       717 ----------~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg~~LaSgs~DG~V~IW  783 (784)
                                .|.+++|+|++.+|++++.||.|++||+.+++.+ .+..|...|++++|+|++.+|++++.|+..+.|
T Consensus       265 ~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~  342 (368)
T 3mmy_A          265 TNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGH  342 (368)
T ss_dssp             ---CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCG
T ss_pred             ccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccc
Confidence                      6999999999999999999999999999998877 667899999999999999999999998865444

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=2.8e-33  Score=338.21  Aligned_cols=284  Identities=17%  Similarity=0.298  Sum_probs=254.7

Q ss_pred             eEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEc
Q 047260          498 CEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWD  577 (784)
Q Consensus       498 ~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWd  577 (784)
                      ...+.+.+|.+.|+|++|+|++++||+|+.||.|+|||+.+++.+..+..|...|++++|+|++++|++++.||.|+|||
T Consensus         4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~   83 (814)
T 3mkq_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN   83 (814)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred             ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence            45677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC-eeEEe---ecCCeeEEEEec-CCCEEEEEEC
Q 047260          578 AANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPF-LCTHI---TKGGTAQVRFQP-RIGQLLAAAS  652 (784)
Q Consensus       578 l~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~-~~~~~---~~~~v~~v~fsp-~~~~Ll~~s~  652 (784)
                      +.+++ ....+.+|...|.+++|+|++. .+++++.||.|++||+++. .....   +...+.+++|+| ++..+++++.
T Consensus        84 ~~~~~-~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~  161 (814)
T 3mkq_A           84 YNTGE-KVVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL  161 (814)
T ss_dssp             TTTCC-EEEEEECCSSCEEEEEECSSSS-EEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEET
T ss_pred             CCCCc-EEEEEecCCCCEEEEEEeCCCC-EEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeC
Confidence            99876 6677788999999999999987 6778999999999999875 44333   457799999999 7889999999


Q ss_pred             CCcEEEEECCCCeEEEEEeCCC-CCEEEEEEcC--CCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCCC
Q 047260          653 DKVVSIFDIETDRQTHSLQGHA-ELVNYICWDT--NGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYS  728 (784)
Q Consensus       653 Dg~I~IwDl~t~~~i~~l~~h~-~~V~sl~~sp--dg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~  728 (784)
                      ||.|++||++++.....+..+. ..+.+++|+|  ++.+|++++.+ .|++||+.+++++..+..|...|.+++|+|++.
T Consensus       162 dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~  241 (814)
T 3mkq_A          162 DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP  241 (814)
T ss_dssp             TSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSS
T ss_pred             CCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCC
Confidence            9999999999888777777655 8999999999  99999999866 999999999999999999999999999999999


Q ss_pred             EEEEEECCCeEEEEECCCCceE-EecccCCceEEEEEeCCCC--EEEEEECCCcEEEeC
Q 047260          729 TLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTG--MVASASHDSSVKLWK  784 (784)
Q Consensus       729 ~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg~--~LaSgs~DG~V~IWd  784 (784)
                      +|++++.||.|++||+.+++.. .+..|...|.+++|+|++.  ++++++ |+.+.+|+
T Consensus       242 ~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~  299 (814)
T 3mkq_A          242 IIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGF-DNGFTVLS  299 (814)
T ss_dssp             EEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEE-TTEEEEEE
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEe-CCCEEEEE
Confidence            9999999999999999998877 6678889999999999987  455555 55566663

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=5e-33  Score=296.93  Aligned_cols=246  Identities=19%  Similarity=0.311  Sum_probs=210.6

Q ss_pred             eEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCC--CceeeecCCCCCCeEEEEEcc--CCCEEEEEeCCCeEEEE
Q 047260          501 GCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDT--LQTESTPEDHKSVVTDVRFRP--NSSQLATASVDKSVRLW  576 (784)
Q Consensus       501 ~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t--~~~~~~l~~h~~~It~i~fsp--dg~~Latgs~Dg~I~IW  576 (784)
                      ..+.+|.+.|++++|+|+|++||+|+.|++|+|||+.+  .+.+..+.+|.+.|++++|++  ++++|++|+.|++|+||
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW   82 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW   82 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence            45678999999999999999999999999999999974  467788999999999999986  48999999999999999


Q ss_pred             cCCCCc-ceeeeccCCCCCeEEEEEcCCC-CcEEEEEeCCCeEEEEeCCCCe-----eEEeecCCeeEEEEecC------
Q 047260          577 DAANPN-FCSQAYTGHSSPIMSLDFHPKK-TDLFCFCDNDNEIQYWSINPFL-----CTHITKGGTAQVRFQPR------  643 (784)
Q Consensus       577 dl~~~~-~~~~~~~~h~~~V~sl~~sp~~-~~ll~sgs~dg~I~iwDl~~~~-----~~~~~~~~v~~v~fsp~------  643 (784)
                      |++++. .....+.+|...|.+++|+|+. ..+|++++.|+.|++||++...     ....+...+.+++|+|+      
T Consensus        83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~  162 (297)
T 2pm7_B           83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG  162 (297)
T ss_dssp             EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred             EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence            998764 2445567899999999999973 3488899999999999998642     23445678999999997      


Q ss_pred             -------CCEEEEEECCCcEEEEECCCCe----EEEEEeCCCCCEEEEEEcCCC---CEEEEEeCC-eEEEEeCCCCc--
Q 047260          644 -------IGQLLAAASDKVVSIFDIETDR----QTHSLQGHAELVNYICWDTNG---DYLASVSQN-LVKVWSMASGE--  706 (784)
Q Consensus       644 -------~~~Ll~~s~Dg~I~IwDl~t~~----~i~~l~~h~~~V~sl~~spdg---~~Lasgsdd-~I~IwDl~t~~--  706 (784)
                             +..|++++.|+.|++||+++++    ....+.+|...|.+++|+|++   .+|++++.| +|+|||+++..  
T Consensus       163 ~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~  242 (297)
T 2pm7_B          163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGP  242 (297)
T ss_dssp             -------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC
T ss_pred             cCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCc
Confidence                   4689999999999999998765    667888999999999999985   789999866 99999998753  


Q ss_pred             -eEEEe--ccCCCceEEEEEecCCCEEEEEECCCeEEEEECCC
Q 047260          707 -CIQEL--SSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAE  746 (784)
Q Consensus       707 -~i~~l--~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~  746 (784)
                       ....+  ..+...|.+++|+|++++|++++.|+.|+||+...
T Consensus       243 ~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          243 WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             CEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred             cceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence             22233  45678899999999999999999999999999763

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=7.6e-34  Score=315.68  Aligned_cols=272  Identities=15%  Similarity=0.174  Sum_probs=234.0

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeec
Q 047260          509 KVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAY  588 (784)
Q Consensus       509 ~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~  588 (784)
                      .+++++|+|++++|++++.|+.|++||+.+++....+..| ..+....|++++++|++++.||.|+|||+.++. ....+
T Consensus        58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~  135 (420)
T 3vl1_A           58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNL-QREID  135 (420)
T ss_dssp             CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCE-EEEET
T ss_pred             cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcc-eeeec
Confidence            3557899999999999999999999999988877777666 445556789999999999999999999999765 66777


Q ss_pred             cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEe---ecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCe
Q 047260          589 TGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHI---TKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDR  665 (784)
Q Consensus       589 ~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~---~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~  665 (784)
                      .+|...|.+++|+|++. +|++++.|+.|++||+++.+.+..   +...+.+++|+|++..|++++.|+.|++||+++++
T Consensus       136 ~~h~~~v~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~  214 (420)
T 3vl1_A          136 QAHVSEITKLKFFPSGE-ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGT  214 (420)
T ss_dssp             TSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE
T ss_pred             ccccCccEEEEECCCCC-EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCc
Confidence            89999999999999977 888999999999999987655444   45789999999999999999999999999999999


Q ss_pred             EEEEEeC---CCCCEEEEE---------------------EcCCCCEEEEEeCC-eEEEEeCCCCceEEEec-cCCCceE
Q 047260          666 QTHSLQG---HAELVNYIC---------------------WDTNGDYLASVSQN-LVKVWSMASGECIQELS-SNGNQFH  719 (784)
Q Consensus       666 ~i~~l~~---h~~~V~sl~---------------------~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~-~~~~~I~  719 (784)
                      .+..+..   +...|.+++                     |+|++++|++++.+ .|++||+++++.+..+. .|...|.
T Consensus       215 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~  294 (420)
T 3vl1_A          215 TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCN  294 (420)
T ss_dssp             EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEE
T ss_pred             eeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCce
Confidence            9988875   444555555                     57889999999866 99999999998877775 4778999


Q ss_pred             EEEEecCCC-EEEEEECCCeEEEEECCCCce--EEecc-cCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          720 SCVFHPSYS-TLLVVGGISSLELWNMAENKS--MTIAA-HENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       720 sl~fspdg~-~L~s~s~dg~I~Iwdl~~~~~--~~~~~-h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      +++|+|++. +|++++.||.|++||+.+++.  ..+.. |...|.++.| +++++|++++.||.|+|||
T Consensus       295 ~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~  362 (420)
T 3vl1_A          295 SLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDI  362 (420)
T ss_dssp             EEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEE
T ss_pred             eEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEe
Confidence            999999999 999999999999999998754  35554 6778888865 5788999999999999996

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1.2e-32  Score=302.97  Aligned_cols=283  Identities=19%  Similarity=0.344  Sum_probs=235.7

Q ss_pred             EeEeecCCCceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeeecC-------------CCCCCeEEEEEcc-CCCEE
Q 047260          500 VGCIRSRNSKVTCCHFSS-DGKLLASSGHDRKVVLWNMDTLQTESTPE-------------DHKSVVTDVRFRP-NSSQL  564 (784)
Q Consensus       500 i~~l~~H~~~V~~l~fsp-dg~~Lasgs~Dg~I~IWd~~t~~~~~~l~-------------~h~~~It~i~fsp-dg~~L  564 (784)
                      ...+.+|.+.|++++|+| ++++|++|+.||.|+|||+.++.....+.             +|...|++++|+| ++.+|
T Consensus        36 ~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  115 (408)
T 4a11_B           36 RDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMF  115 (408)
T ss_dssp             EEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCE
T ss_pred             eeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEE
Confidence            345677999999999999 99999999999999999999876655543             5999999999999 78899


Q ss_pred             EEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCC--cEEEEEeCCCeEEEEeCCCCeeEEee---cCCeeEEE
Q 047260          565 ATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKT--DLFCFCDNDNEIQYWSINPFLCTHIT---KGGTAQVR  639 (784)
Q Consensus       565 atgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~--~ll~sgs~dg~I~iwDl~~~~~~~~~---~~~v~~v~  639 (784)
                      ++++.||.|++||+.++. ....+ .+...+.++.|++.+.  .++++++.++.|++||+++...+..+   ...+.+++
T Consensus       116 ~s~~~d~~i~iwd~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~  193 (408)
T 4a11_B          116 TSSSFDKTLKVWDTNTLQ-TADVF-NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVS  193 (408)
T ss_dssp             EEEETTSEEEEEETTTTE-EEEEE-ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEE
T ss_pred             EEEeCCCeEEEeeCCCCc-cceec-cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEE
Confidence            999999999999999866 33333 3678899999998644  38889999999999999977655444   46789999


Q ss_pred             EecCCCE-EEEEECCCcEEEEECCCCe-EEEEE---------------eCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEe
Q 047260          640 FQPRIGQ-LLAAASDKVVSIFDIETDR-QTHSL---------------QGHAELVNYICWDTNGDYLASVSQN-LVKVWS  701 (784)
Q Consensus       640 fsp~~~~-Ll~~s~Dg~I~IwDl~t~~-~i~~l---------------~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwD  701 (784)
                      |+|++.+ +++++.||.|++||++++. .+..+               ..|...|.+++|+|++.+|++++.+ .|++||
T Consensus       194 ~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd  273 (408)
T 4a11_B          194 WSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWN  273 (408)
T ss_dssp             ECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             ECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEE
Confidence            9999985 8899999999999998765 44444               4688899999999999999999865 999999


Q ss_pred             CCCCceEEEeccC-----CCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE-EecccCCceEEEEEeCCCCEEEEEE
Q 047260          702 MASGECIQELSSN-----GNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASAS  775 (784)
Q Consensus       702 l~t~~~i~~l~~~-----~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg~~LaSgs  775 (784)
                      +.+++.+..+..+     ...+...........+++++.++.|++||+.+++.+ .+.+|...|++++|+|++.+|++++
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  353 (408)
T 4a11_B          274 SSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGS  353 (408)
T ss_dssp             TTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEE
T ss_pred             CCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEEC
Confidence            9998765544322     122222333344566888888999999999999887 6678999999999999999999999


Q ss_pred             CCCcEEEeC
Q 047260          776 HDSSVKLWK  784 (784)
Q Consensus       776 ~DG~V~IWd  784 (784)
                      .||.|+|||
T Consensus       354 ~dg~i~iw~  362 (408)
T 4a11_B          354 RDCNILAWV  362 (408)
T ss_dssp             TTSCEEEEE
T ss_pred             CCCeEEEEe
Confidence            999999996

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=7.4e-33  Score=350.85  Aligned_cols=283  Identities=22%  Similarity=0.413  Sum_probs=260.2

Q ss_pred             eEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCC
Q 047260          501 GCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAAN  580 (784)
Q Consensus       501 ~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~  580 (784)
                      ..+.+|.+.|++++|+|+|++||+|+.||+|+|||+.+++.+..+.+|...|++++|+|++++|++++.|+.|+|||+.+
T Consensus       609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~  688 (1249)
T 3sfz_A          609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT  688 (1249)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             EEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCC
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CcceeeeccCCCCCeEEEEEcCCC-CcEEEEEeCCCeEEEEeCCCCeeEEee---cCCeeEEEEecCCCEEEEEECCCcE
Q 047260          581 PNFCSQAYTGHSSPIMSLDFHPKK-TDLFCFCDNDNEIQYWSINPFLCTHIT---KGGTAQVRFQPRIGQLLAAASDKVV  656 (784)
Q Consensus       581 ~~~~~~~~~~h~~~V~sl~~sp~~-~~ll~sgs~dg~I~iwDl~~~~~~~~~---~~~v~~v~fsp~~~~Ll~~s~Dg~I  656 (784)
                      ++ ....+.+|...|.+++|+|++ ..++++++.|+.|++||+++..+...+   ...+.+++|+|++..+++++.||.|
T Consensus       689 ~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v  767 (1249)
T 3sfz_A          689 GK-LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTL  767 (1249)
T ss_dssp             CC-EEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEE
T ss_pred             Cc-eEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeE
Confidence            76 677788999999999999963 458889999999999999988777654   4678999999999999999999999


Q ss_pred             EEEECCCCeEEEEEeC-------------CCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEEEec-cCCCceEEEE
Q 047260          657 SIFDIETDRQTHSLQG-------------HAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELS-SNGNQFHSCV  722 (784)
Q Consensus       657 ~IwDl~t~~~i~~l~~-------------h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~~l~-~~~~~I~sl~  722 (784)
                      ++||+++++....+..             +...+.+++|+|+|.++++++++.|.+||+.++..+..+. .|...|.+++
T Consensus       768 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~  847 (1249)
T 3sfz_A          768 RLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCD  847 (1249)
T ss_dssp             EEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEE
T ss_pred             EEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEE
Confidence            9999999887776642             2337889999999999999999999999999998888776 7889999999


Q ss_pred             EecCCCEEEEEECCCeEEEEECCCCceE-EecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          723 FHPSYSTLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       723 fspdg~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      |+|++.++++++.|+.|++||+.++... .+.+|...|.+++|+|++.+|++++.||.|++||
T Consensus       848 ~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~  910 (1249)
T 3sfz_A          848 FSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE  910 (1249)
T ss_dssp             ECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             EcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEE
Confidence            9999999999999999999999998877 6779999999999999999999999999999996

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=4.3e-32  Score=288.76  Aligned_cols=268  Identities=20%  Similarity=0.376  Sum_probs=228.5

Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeec--CCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeee
Q 047260          510 VTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTP--EDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQA  587 (784)
Q Consensus       510 V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l--~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~  587 (784)
                      +++|+||+++ +||+| .|++|+|||+.+++.+..+  .+|...|++++|+|++++|++|+.||+|+|||+++++ +...
T Consensus        28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~-~~~~  104 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK-RLRN  104 (318)
T ss_dssp             CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-EEEE
T ss_pred             ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCce-eEEE
Confidence            5789999886 77776 4999999999999988765  4678889999999999999999999999999999876 6777


Q ss_pred             ccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCee----EEeecCCeeEEEEecCCCEEEEEECCCcEEEEECCC
Q 047260          588 YTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLC----THITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIET  663 (784)
Q Consensus       588 ~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~----~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t  663 (784)
                      +.+|...+.++.+.+.   ++++++.++.+++|+......    ...+...+..+.+.+++.++++++.|+.|++||+++
T Consensus       105 ~~~h~~~~~~~~~~~~---~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  181 (318)
T 4ggc_A          105 MTSHSARVGSLSWNSY---ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP  181 (318)
T ss_dssp             EECCSSCEEEEEEETT---EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred             ecCccceEEEeecCCC---EEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCC
Confidence            8899999988877643   899999999999999986432    233457788999999999999999999999999987


Q ss_pred             Ce----EEEEEeCCCCCEEEEEEcCCCCE-EEEE--eC-CeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEE-
Q 047260          664 DR----QTHSLQGHAELVNYICWDTNGDY-LASV--SQ-NLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVG-  734 (784)
Q Consensus       664 ~~----~i~~l~~h~~~V~sl~~spdg~~-Lasg--sd-d~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s-  734 (784)
                      ++    .......+...|.++.++|++.. +..+  +. +.|++||.......... .+...+..+.|+|++..+++++ 
T Consensus       182 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~sg  260 (318)
T 4ggc_A          182 GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV-DAHSQVCSILWSPHYKELISGHG  260 (318)
T ss_dssp             BTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE-ECSSCEEEEEEETTTTEEEEEEC
T ss_pred             CcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc-cceeeeeeeeecccccceEEEEE
Confidence            64    34455668889999999997653 3333  33 39999999988877665 4557799999999999988776 


Q ss_pred             -CCCeEEEEECCCCceE-EecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          735 -GISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       735 -~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                       .|+.|+|||+.+++.+ .+.+|.+.|++++|+|++++|+||+.||+|+|||
T Consensus       261 ~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd  312 (318)
T 4ggc_A          261 FAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR  312 (318)
T ss_dssp             TTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred             cCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence             6899999999999887 7789999999999999999999999999999997

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=2.3e-33  Score=299.81  Aligned_cols=282  Identities=14%  Similarity=0.191  Sum_probs=214.6

Q ss_pred             EeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC----ceeeecCCCCCCeEEEEEcc--CCCEEEEEeCCCeEEE
Q 047260          502 CIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTL----QTESTPEDHKSVVTDVRFRP--NSSQLATASVDKSVRL  575 (784)
Q Consensus       502 ~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~----~~~~~l~~h~~~It~i~fsp--dg~~Latgs~Dg~I~I  575 (784)
                      .+.+|.+.|++++|+|++++||+|+.||.|+|||+.++    +....+.+|...|++++|+|  ++++|++++.||.|+|
T Consensus         6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~v   85 (351)
T 3f3f_A            6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKL   85 (351)
T ss_dssp             EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred             cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEE
Confidence            46789999999999999999999999999999999876    46677789999999999999  6999999999999999


Q ss_pred             EcCCCCc--------ceeeeccCCCCCeEEEEEcCC--CCcEEEEEeCCCeEEEEeCCCCeeEE----------------
Q 047260          576 WDAANPN--------FCSQAYTGHSSPIMSLDFHPK--KTDLFCFCDNDNEIQYWSINPFLCTH----------------  629 (784)
Q Consensus       576 Wdl~~~~--------~~~~~~~~h~~~V~sl~~sp~--~~~ll~sgs~dg~I~iwDl~~~~~~~----------------  629 (784)
                      ||++++.        .....+.+|...|.+++|+|+  +. ++++++.|+.|++||+++...+.                
T Consensus        86 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  164 (351)
T 3f3f_A           86 WEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL-KLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA  164 (351)
T ss_dssp             EEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred             EecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc-EEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence            9998763        346677789999999999998  55 78889999999999998654321                


Q ss_pred             eecCCeeEEEEecC---CCEEEEEECCCcEEEEECCCCeE--EEEEeCCCCCEEEEEEcCCC----CEEEEEeCC-eEEE
Q 047260          630 ITKGGTAQVRFQPR---IGQLLAAASDKVVSIFDIETDRQ--THSLQGHAELVNYICWDTNG----DYLASVSQN-LVKV  699 (784)
Q Consensus       630 ~~~~~v~~v~fsp~---~~~Ll~~s~Dg~I~IwDl~t~~~--i~~l~~h~~~V~sl~~spdg----~~Lasgsdd-~I~I  699 (784)
                      .+...+.++.|+|+   +..+++++.++.+.+|+...++.  +..+.+|...|++++|+|++    .+|++++.+ .|++
T Consensus       165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~i  244 (351)
T 3f3f_A          165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI  244 (351)
T ss_dssp             SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEE
T ss_pred             CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEE
Confidence            23357889999997   89999999999998888887765  67778899999999999998    789998865 9999


Q ss_pred             EeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECC----CeEEEEECCCCceE-EecccCCceEEEEEeCCCCEEEEE
Q 047260          700 WSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGI----SSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASA  774 (784)
Q Consensus       700 wDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~d----g~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg~~LaSg  774 (784)
                      ||++.+........+...+....+.+....+..+..+    ..+.+|+....+.+ .+.+|...|++++|+|++++|+++
T Consensus       245 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~  324 (351)
T 3f3f_A          245 FKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSA  324 (351)
T ss_dssp             EEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEE
T ss_pred             EeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEe
Confidence            9999876655544444444444445544444444333    34555555555544 667899999999999999999999


Q ss_pred             ECCCcEEEeC
Q 047260          775 SHDSSVKLWK  784 (784)
Q Consensus       775 s~DG~V~IWd  784 (784)
                      +.||.|+|||
T Consensus       325 ~~dg~v~iw~  334 (351)
T 3f3f_A          325 GDDGKVRLWK  334 (351)
T ss_dssp             ETTSCEEEEE
T ss_pred             cCCCcEEEEe
Confidence            9999999996

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=8.3e-33  Score=304.55  Aligned_cols=288  Identities=14%  Similarity=0.120  Sum_probs=246.0

Q ss_pred             CCCCCcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEE
Q 047260          435 EGTGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCH  514 (784)
Q Consensus       435 ~~~~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~  514 (784)
                      .++...+.++.+.+   .++.+|+.|+.+++|+......                    ...+..+..+.+|...|++++
T Consensus        13 ~~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~~~~--------------------~~~~~~~~~~~~h~~~v~~~~   69 (397)
T 1sq9_A           13 KAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDN--------------------ENPKDKSYSHFVHKSGLHHVD   69 (397)
T ss_dssp             SCSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTT--------------------CCGGGGEEEEECCTTCEEEEE
T ss_pred             hhhhcCeEEEEecC---CeEEEEcCCCEEEEEECCCccc--------------------ccCCCcceEEecCCCcEEEEE
Confidence            44555566666655   5677899999999998754321                    112345667789999999999


Q ss_pred             EcCC----C---CEEEEEeCCCeEEEEECCCCce-----eeecCCC-----CCCeEEEEEc----cCCCE-EEEEeCCCe
Q 047260          515 FSSD----G---KLLASSGHDRKVVLWNMDTLQT-----ESTPEDH-----KSVVTDVRFR----PNSSQ-LATASVDKS  572 (784)
Q Consensus       515 fspd----g---~~Lasgs~Dg~I~IWd~~t~~~-----~~~l~~h-----~~~It~i~fs----pdg~~-Latgs~Dg~  572 (784)
                      |+|+    +   ++|++++.||.|++||+.+++.     +..+..|     ...|.+++|+    |++++ |++++.||.
T Consensus        70 ~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~  149 (397)
T 1sq9_A           70 VLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGT  149 (397)
T ss_dssp             EEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSC
T ss_pred             EecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCc
Confidence            9999    9   9999999999999999998886     7888888     5999999999    99999 999999999


Q ss_pred             EEEEcCCC------Ccceee-----ec-------cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEee---
Q 047260          573 VRLWDAAN------PNFCSQ-----AY-------TGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHIT---  631 (784)
Q Consensus       573 I~IWdl~~------~~~~~~-----~~-------~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~---  631 (784)
                      |++||+.+      ... ..     .+       ..|...|.+++|+|++  ++++++.|+.|++||+++.+.+..+   
T Consensus       150 i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~  226 (397)
T 1sq9_A          150 TYIWKFHPFADESNSLT-LNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQ  226 (397)
T ss_dssp             EEEEEEESSSSHHHHTT-TCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECC
T ss_pred             EEEEeCCccccccccce-eeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCceeEEEecc
Confidence            99999987      442 22     34       4588999999999998  8889999999999999987766554   


Q ss_pred             ------cCCeeEEEEecCCCEEEEEECC---CcEEEEECCCCeEEEEEeC-------------CCCCEEEEEEcCCCCEE
Q 047260          632 ------KGGTAQVRFQPRIGQLLAAASD---KVVSIFDIETDRQTHSLQG-------------HAELVNYICWDTNGDYL  689 (784)
Q Consensus       632 ------~~~v~~v~fsp~~~~Ll~~s~D---g~I~IwDl~t~~~i~~l~~-------------h~~~V~sl~~spdg~~L  689 (784)
                            ...+.+++|+|++.+|++++.|   +.|++||+++++.+..+..             |...|.+++|+|++.+|
T Consensus       227 ~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  306 (397)
T 1sq9_A          227 HSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETL  306 (397)
T ss_dssp             C---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEE
T ss_pred             ccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEE
Confidence                  5568999999999999999999   9999999999999999998             99999999999999999


Q ss_pred             EEEeCC-eEEEEeCCCCceEEEec------cC---------------CCceEEEEEecCC----------CEEEEEECCC
Q 047260          690 ASVSQN-LVKVWSMASGECIQELS------SN---------------GNQFHSCVFHPSY----------STLLVVGGIS  737 (784)
Q Consensus       690 asgsdd-~I~IwDl~t~~~i~~l~------~~---------------~~~I~sl~fspdg----------~~L~s~s~dg  737 (784)
                      ++++.+ .|+|||+++++++..+.      .|               ...|.+++|+|++          .+|++++.||
T Consensus       307 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg  386 (397)
T 1sq9_A          307 CSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDR  386 (397)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTT
T ss_pred             EEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCC
Confidence            999965 99999999999999998      77               8999999999998          7999999999


Q ss_pred             eEEEEECCCCc
Q 047260          738 SLELWNMAENK  748 (784)
Q Consensus       738 ~I~Iwdl~~~~  748 (784)
                      .|++||+.+++
T Consensus       387 ~i~iw~~~~g~  397 (397)
T 1sq9_A          387 SIRWFREAGGK  397 (397)
T ss_dssp             EEEEEEEEC--
T ss_pred             cEEEEEcCCCC
Confidence            99999998763

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1.2e-32  Score=309.65  Aligned_cols=270  Identities=18%  Similarity=0.414  Sum_probs=240.4

Q ss_pred             EEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcC
Q 047260          499 EVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDA  578 (784)
Q Consensus       499 ~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl  578 (784)
                      .+....+|...|+|+.|  ++++|++|+.||.|+|||+.+++.+..+.+|...|++++|  ++++|++|+.||+|++||+
T Consensus       125 ~~~~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~  200 (435)
T 1p22_A          125 RIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDV  200 (435)
T ss_dssp             CEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEES
T ss_pred             EEecccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEEC
Confidence            34445568888999987  7899999999999999999999999999999999999999  7889999999999999999


Q ss_pred             CCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeE------EeecCCeeEEEEecCCCEEEEEEC
Q 047260          579 ANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCT------HITKGGTAQVRFQPRIGQLLAAAS  652 (784)
Q Consensus       579 ~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~------~~~~~~v~~v~fsp~~~~Ll~~s~  652 (784)
                      .+++ ....+.+|...|.+++|+++   ++++++.||.|++||+++....      ..+...+.++.|  ++..+++++.
T Consensus       201 ~~~~-~~~~~~~h~~~v~~l~~~~~---~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~  274 (435)
T 1p22_A          201 NTGE-MLNTLIHHCEAVLHLRFNNG---MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASG  274 (435)
T ss_dssp             SSCC-EEEEECCCCSCEEEEECCTT---EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEET
T ss_pred             CCCc-EEEEEcCCCCcEEEEEEcCC---EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeC
Confidence            9876 67778899999999999743   8999999999999999875433      234467788888  6789999999


Q ss_pred             CCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEE
Q 047260          653 DKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLL  731 (784)
Q Consensus       653 Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~  731 (784)
                      |+.|++||+++++.+..+.+|...|.++.|+  +.+|++++.+ .|++||+++++++.++..|...|.++.|  ++.+|+
T Consensus       275 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~  350 (435)
T 1p22_A          275 DRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIV  350 (435)
T ss_dssp             TSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEE
T ss_pred             CCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEE
Confidence            9999999999999999999999999999994  6788888855 9999999999999999999999999999  678999


Q ss_pred             EEECCCeEEEEECCCCc---------eE-EecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          732 VVGGISSLELWNMAENK---------SM-TIAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       732 s~s~dg~I~Iwdl~~~~---------~~-~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      +++.||.|++||+.++.         .+ .+..|.+.|.+++|  ++.+|++++.||.|+|||
T Consensus       351 sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd  411 (435)
T 1p22_A          351 SGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD  411 (435)
T ss_dssp             EEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred             EEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEE
Confidence            99999999999987654         33 67899999999999  678999999999999997

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.3e-33  Score=339.28  Aligned_cols=313  Identities=12%  Similarity=0.114  Sum_probs=243.9

Q ss_pred             CcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCC
Q 047260          439 SLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSD  518 (784)
Q Consensus       439 ~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspd  518 (784)
                      ..+..+.|.+  .+++.+++.|++|++|+.....                          .+..+. |.+.|++++|+|+
T Consensus        59 ~~V~~l~fsp--g~~L~S~s~D~~v~lWd~~~~~--------------------------~~~~~~-~~~~V~~v~~sp~  109 (902)
T 2oaj_A           59 SAIKEMRFVK--GIYLVVINAKDTVYVLSLYSQK--------------------------VLTTVF-VPGKITSIDTDAS  109 (902)
T ss_dssp             CCEEEEEEET--TTEEEEEETTCEEEEEETTTCS--------------------------EEEEEE-CSSCEEEEECCTT
T ss_pred             CCEEEEEEcC--CCEEEEEECcCeEEEEECCCCc--------------------------EEEEEc-CCCCEEEEEECCC
Confidence            3455666766  4466678899999999774321                          223333 6688999999999


Q ss_pred             CCEEEEEeCCCeEEEEECCCCcee-----------eecCCCCCCeEEEEEccC-CCEEEEEeCCCeEEEEcCCCCcceee
Q 047260          519 GKLLASSGHDRKVVLWNMDTLQTE-----------STPEDHKSVVTDVRFRPN-SSQLATASVDKSVRLWDAANPNFCSQ  586 (784)
Q Consensus       519 g~~Lasgs~Dg~I~IWd~~t~~~~-----------~~l~~h~~~It~i~fspd-g~~Latgs~Dg~I~IWdl~~~~~~~~  586 (784)
                      +++|++|+.||.|++||+.+++..           ..+.+|.+.|++++|+|+ +..|++|+.||.| +||+++.+ +..
T Consensus       110 g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~-~~~  187 (902)
T 2oaj_A          110 LDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENE-IKQ  187 (902)
T ss_dssp             CSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTE-EEE
T ss_pred             CCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCc-eEE
Confidence            999999999999999999987754           345789999999999995 5789999999999 99999866 444


Q ss_pred             eccCC------------------CCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEe--e---------------
Q 047260          587 AYTGH------------------SSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHI--T---------------  631 (784)
Q Consensus       587 ~~~~h------------------~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~--~---------------  631 (784)
                      .+..|                  ...|.+++|+|++. +|++++.|+.|++||+++++++..  +               
T Consensus       188 ~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~-~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~  266 (902)
T 2oaj_A          188 SFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSL-HIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRD  266 (902)
T ss_dssp             EECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSS-EEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCC
T ss_pred             EEecccCCcCCCcccccccccccCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCC
Confidence            44444                  57899999999976 888999999999999865443221  0               


Q ss_pred             ----cCCeeEEEE-------------------------------------------------------------------
Q 047260          632 ----KGGTAQVRF-------------------------------------------------------------------  640 (784)
Q Consensus       632 ----~~~v~~v~f-------------------------------------------------------------------  640 (784)
                          ...|.+++|                                                                   
T Consensus       267 ~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~  346 (902)
T 2oaj_A          267 SSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIV  346 (902)
T ss_dssp             CSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEE
T ss_pred             CccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceE
Confidence                011222222                                                                   


Q ss_pred             --------------------------------------------------------------------------------
Q 047260          641 --------------------------------------------------------------------------------  640 (784)
Q Consensus       641 --------------------------------------------------------------------------------  640 (784)
                                                                                                      
T Consensus       347 ~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~  426 (902)
T 2oaj_A          347 NILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQN  426 (902)
T ss_dssp             EEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBC
T ss_pred             EEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccC
Confidence                                                                                            


Q ss_pred             -----------------ecCCCEEEEEECCCcEEEEECCCCeEE----EE--Ee-----CCCCCEEEEEEcCCCCEEEEE
Q 047260          641 -----------------QPRIGQLLAAASDKVVSIFDIETDRQT----HS--LQ-----GHAELVNYICWDTNGDYLASV  692 (784)
Q Consensus       641 -----------------sp~~~~Ll~~s~Dg~I~IwDl~t~~~i----~~--l~-----~h~~~V~sl~~spdg~~Lasg  692 (784)
                                       +|++..|++++.|++|++||+.++...    ..  +.     +|...|.+|+|+|++++||++
T Consensus       427 ~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsg  506 (902)
T 2oaj_A          427 KDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVS  506 (902)
T ss_dssp             CCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEE
T ss_pred             CCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEE
Confidence                             233445666666777777776655311    11  11     678899999999999999999


Q ss_pred             eCC-eEEEEeCCCC---------------------------------------------ceEEEeccCCCceEEEEEecC
Q 047260          693 SQN-LVKVWSMASG---------------------------------------------ECIQELSSNGNQFHSCVFHPS  726 (784)
Q Consensus       693 sdd-~I~IwDl~t~---------------------------------------------~~i~~l~~~~~~I~sl~fspd  726 (784)
                      +.+ +|+|||+.++                                             +++..+..|...|++++|+|+
T Consensus       507 s~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpd  586 (902)
T 2oaj_A          507 IETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNI  586 (902)
T ss_dssp             ETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBT
T ss_pred             ecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCC
Confidence            966 9999999765                                             247788889999999999999


Q ss_pred             CCEEEEEECCCeEEEEECCCCceEE------ec-ccCCceEEEEEe-----CCC---CEEEEEECCCcEEEeC
Q 047260          727 YSTLLVVGGISSLELWNMAENKSMT------IA-AHENIISALAQS-----PVT---GMVASASHDSSVKLWK  784 (784)
Q Consensus       727 g~~L~s~s~dg~I~Iwdl~~~~~~~------~~-~h~~~V~slafs-----pdg---~~LaSgs~DG~V~IWd  784 (784)
                      | +|++++.|++|+|||+.+...+.      +. +|.+.|++|+|+     |||   .+|++|+.||+|++||
T Consensus       587 G-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd  658 (902)
T 2oaj_A          587 G-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYK  658 (902)
T ss_dssp             S-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEE
T ss_pred             c-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEE
Confidence            9 99999999999999998876642      22 789999999999     885   7999999999999996

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=3.3e-33  Score=308.02  Aligned_cols=275  Identities=13%  Similarity=0.093  Sum_probs=221.4

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCC-------eEEEEECCCCce----------eeecCCCCCCeEEEEEccCCCEEEEEe-
Q 047260          507 NSKVTCCHFSSDGKLLASSGHDR-------KVVLWNMDTLQT----------ESTPEDHKSVVTDVRFRPNSSQLATAS-  568 (784)
Q Consensus       507 ~~~V~~l~fspdg~~Lasgs~Dg-------~I~IWd~~t~~~----------~~~l~~h~~~It~i~fspdg~~Latgs-  568 (784)
                      .-+|+|++|+||+++||+|+.|.       +|+||++.....          ...+..|...|.+++++  ++.+++|+ 
T Consensus        14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~   91 (365)
T 4h5i_A           14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCN   91 (365)
T ss_dssp             SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECC
T ss_pred             CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEEC
Confidence            45799999999999999997543       599999875432          13466888899988875  55677654 


Q ss_pred             ----------CCCeEEEEcCCCCcceeee--------ccCCCCCeEEEEEcCCCCcEE-EEEeCCCeEEEEeCCCCeeEE
Q 047260          569 ----------VDKSVRLWDAANPNFCSQA--------YTGHSSPIMSLDFHPKKTDLF-CFCDNDNEIQYWSINPFLCTH  629 (784)
Q Consensus       569 ----------~Dg~I~IWdl~~~~~~~~~--------~~~h~~~V~sl~~sp~~~~ll-~sgs~dg~I~iwDl~~~~~~~  629 (784)
                                .|+.|++|++.........        ...+...+.+++|+||+..++ ++++.|+.|++||+++.+++.
T Consensus        92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~  171 (365)
T 4h5i_A           92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKF  171 (365)
T ss_dssp             CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEE
T ss_pred             CCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEE
Confidence                      4778999998765422211        123455689999999998765 355679999999999988776


Q ss_pred             ee--cCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEE--EeCCCCCEEEEEEcCCCCEEEEEeCC-----eEEEE
Q 047260          630 IT--KGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHS--LQGHAELVNYICWDTNGDYLASVSQN-----LVKVW  700 (784)
Q Consensus       630 ~~--~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~--l~~h~~~V~sl~~spdg~~Lasgsdd-----~I~Iw  700 (784)
                      .+  ...|.+++|+|++.++++++ ++.+.+|+..+++.+..  ...|...|.+++|+|++.++++++.+     .+++|
T Consensus       172 ~~~~~~~V~~v~fspdg~~l~s~s-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~  250 (365)
T 4h5i_A          172 EIETRGEVKDLHFSTDGKVVAYIT-GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKI  250 (365)
T ss_dssp             EEECSSCCCEEEECTTSSEEEEEC-SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEE
T ss_pred             EeCCCCceEEEEEccCCceEEecc-ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeec
Confidence            54  46799999999999888877 45677777777765543  34588899999999999999988732     68889


Q ss_pred             eCCCCce----EEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE-E-ecccCCceEEEEEeCCCCEEEEE
Q 047260          701 SMASGEC----IQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM-T-IAAHENIISALAQSPVTGMVASA  774 (784)
Q Consensus       701 Dl~t~~~----i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~-~-~~~h~~~V~slafspdg~~LaSg  774 (784)
                      |+.....    ...+..|...|++++|+|++++|++++.|++|+|||+.+++++ . +.+|...|++|+|+||+++||||
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~  330 (365)
T 4h5i_A          251 SIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASV  330 (365)
T ss_dssp             EEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEE
T ss_pred             ccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEE
Confidence            9877643    4567788899999999999999999999999999999999887 3 36899999999999999999999


Q ss_pred             ECCCcEEEeC
Q 047260          775 SHDSSVKLWK  784 (784)
Q Consensus       775 s~DG~V~IWd  784 (784)
                      |.|++|+|||
T Consensus       331 S~D~tvrvw~  340 (365)
T 4h5i_A          331 SAANTIHIIK  340 (365)
T ss_dssp             ETTSEEEEEE
T ss_pred             eCCCeEEEEE
Confidence            9999999996

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-31  Score=289.94  Aligned_cols=282  Identities=11%  Similarity=0.147  Sum_probs=244.1

Q ss_pred             CCCcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEc
Q 047260          437 TGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFS  516 (784)
Q Consensus       437 ~~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fs  516 (784)
                      +...+.+..+.++.. ++.+|+.|+.+++|+....                          ..+..+.+|.+.|++++|+
T Consensus        31 h~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~--------------------------~~~~~~~~h~~~v~~~~~~   83 (369)
T 3zwl_B           31 HERPLTQVKYNKEGD-LLFSCSKDSSASVWYSLNG--------------------------ERLGTLDGHTGTIWSIDVD   83 (369)
T ss_dssp             CSSCEEEEEECTTSC-EEEEEESSSCEEEEETTTC--------------------------CEEEEECCCSSCEEEEEEC
T ss_pred             eeceEEEEEEcCCCC-EEEEEeCCCEEEEEeCCCc--------------------------hhhhhhhhcCCcEEEEEEc
Confidence            344466777777655 4557889999999976322                          2456678899999999999


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCC-----CeEEEEcCCCCcc--------
Q 047260          517 SDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVD-----KSVRLWDAANPNF--------  583 (784)
Q Consensus       517 pdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~D-----g~I~IWdl~~~~~--------  583 (784)
                      |++++|++++.||.|++||+.+++.+..+. |...|.+++|+|++++|++++.+     +.|++||+.....        
T Consensus        84 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~  162 (369)
T 3zwl_B           84 CFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVS  162 (369)
T ss_dssp             TTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEEC
T ss_pred             CCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccc
Confidence            999999999999999999999999998887 88999999999999999999999     9999999976542        


Q ss_pred             --eeeeccCCCC--CeEEEEEcCCCCcEEEEEeCCCeEEEEeCCC-CeeEEee---cCCeeEEEEecCCCEEEEEECCCc
Q 047260          584 --CSQAYTGHSS--PIMSLDFHPKKTDLFCFCDNDNEIQYWSINP-FLCTHIT---KGGTAQVRFQPRIGQLLAAASDKV  655 (784)
Q Consensus       584 --~~~~~~~h~~--~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~-~~~~~~~---~~~v~~v~fsp~~~~Ll~~s~Dg~  655 (784)
                        ....+..|..  .+.+++|+|++. ++++++.||.|++||+++ ...+..+   ...+.+++|+|++.+|++++.|+.
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  241 (369)
T 3zwl_B          163 EEPIHKIITHEGLDAATVAGWSTKGK-YIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTN  241 (369)
T ss_dssp             SSCSEEEECCTTCCCEEEEEECGGGC-EEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             cceeeeccCCcCccceeEEEEcCCCC-EEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCce
Confidence              2233445555  899999999887 777889999999999997 5555443   468999999999999999999999


Q ss_pred             EEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC---------------eEEEEeCCCCceEEEeccCCCceEE
Q 047260          656 VSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN---------------LVKVWSMASGECIQELSSNGNQFHS  720 (784)
Q Consensus       656 I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd---------------~I~IwDl~t~~~i~~l~~~~~~I~s  720 (784)
                      |++||+++++.+..+. +...+.+++|+|++.++++++.+               .|++||+.+++.+..+..|...|.+
T Consensus       242 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~  320 (369)
T 3zwl_B          242 SFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNT  320 (369)
T ss_dssp             EEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred             EEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEE
Confidence            9999999999988888 78899999999999999988743               6999999999999999999999999


Q ss_pred             EEEecCCCEEEEEECCCeEEEEECCCCc
Q 047260          721 CVFHPSYSTLLVVGGISSLELWNMAENK  748 (784)
Q Consensus       721 l~fspdg~~L~s~s~dg~I~Iwdl~~~~  748 (784)
                      ++|+|++++|++++.||.|++|++..+.
T Consensus       321 ~~~s~~~~~l~s~~~dg~v~iw~~~~~~  348 (369)
T 3zwl_B          321 VAISPQGTSYASGGEDGFIRLHHFEKSY  348 (369)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEEECHHH
T ss_pred             EEECCCCCEEEEEcCCCeEEEEECcccc
Confidence            9999999999999999999999998754

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=8.5e-33  Score=298.81  Aligned_cols=287  Identities=12%  Similarity=0.249  Sum_probs=237.3

Q ss_pred             CCCcccccccccCCCceEecccc---CCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEE
Q 047260          437 TGSLASASNLLEDIDRFADVGSI---DENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCC  513 (784)
Q Consensus       437 ~~~~~ss~~~~~~~~~ll~~gS~---D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l  513 (784)
                      +...+.++.+.++...++++|+.   |+.+++|+.....                        . ......+|...|+++
T Consensus        17 h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~------------------------~-~~~~~~~~~~~v~~~   71 (357)
T 3i2n_A           17 FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGD------------------------L-KLLREIEKAKPIKCG   71 (357)
T ss_dssp             CSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSS------------------------E-EEEEEEEESSCEEEE
T ss_pred             CCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCc------------------------c-cceeeecccCcEEEE
Confidence            44567778888888889988988   9999999874322                        0 111223689999999


Q ss_pred             EEcCC---CCEEEEEeCCCeEEEEECCCCc-eeeecCCCCCCeEEEEE------ccCCCEEEEEeCCCeEEEEcCCCCcc
Q 047260          514 HFSSD---GKLLASSGHDRKVVLWNMDTLQ-TESTPEDHKSVVTDVRF------RPNSSQLATASVDKSVRLWDAANPNF  583 (784)
Q Consensus       514 ~fspd---g~~Lasgs~Dg~I~IWd~~t~~-~~~~l~~h~~~It~i~f------spdg~~Latgs~Dg~I~IWdl~~~~~  583 (784)
                      +|+|+   +++|++|+.||.|++||+.+++ .+..+.+|...|+++.|      +|++++|++++.||.|++||++++..
T Consensus        72 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~  151 (357)
T 3i2n_A           72 TFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDD  151 (357)
T ss_dssp             ECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSS
T ss_pred             EEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCC
Confidence            99998   6999999999999999999888 88889999999999965      67899999999999999999998764


Q ss_pred             eeeeccCCCC----CeEEEE----EcCCCCcEEEEEeCCCeEEEEeCCCCeeEE--eecCCeeEEEEec---CCCEEEEE
Q 047260          584 CSQAYTGHSS----PIMSLD----FHPKKTDLFCFCDNDNEIQYWSINPFLCTH--ITKGGTAQVRFQP---RIGQLLAA  650 (784)
Q Consensus       584 ~~~~~~~h~~----~V~sl~----~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~--~~~~~v~~v~fsp---~~~~Ll~~  650 (784)
                      ....+..|..    .|.+++    |+|++. ++++++.|+.|++||+++.....  .+...+.+++|+|   ++..++++
T Consensus       152 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~  230 (357)
T 3i2n_A          152 PVANMEPVQGENKRDCWTVAFGNAYNQEER-VVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVAT  230 (357)
T ss_dssp             CSEEECCCTTSCCCCEEEEEEECCCC-CCC-EEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEE
T ss_pred             cceeccccCCCCCCceEEEEEEeccCCCCC-EEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEE
Confidence            5555555444    899998    667766 78889999999999999877654  3457899999999   89999999


Q ss_pred             ECCCcEEEEECCCCeEEEEEe-----CCCCCEEEEEEcCCCC-EEEEEeCC-eEEEEeCCCC------------------
Q 047260          651 ASDKVVSIFDIETDRQTHSLQ-----GHAELVNYICWDTNGD-YLASVSQN-LVKVWSMASG------------------  705 (784)
Q Consensus       651 s~Dg~I~IwDl~t~~~i~~l~-----~h~~~V~sl~~spdg~-~Lasgsdd-~I~IwDl~t~------------------  705 (784)
                      +.||.|++||+++++.+..+.     +|...|.+++|+|++. +|++++.+ .|++||++.+                  
T Consensus       231 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~  310 (357)
T 3i2n_A          231 SLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGS  310 (357)
T ss_dssp             ESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCE
T ss_pred             CCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccc
Confidence            999999999998876544443     8999999999999998 78888855 9999999754                  


Q ss_pred             -ceEEEeccCCCceEEEEEecCCCEEE-EEECCCeEEEEECCCCce
Q 047260          706 -ECIQELSSNGNQFHSCVFHPSYSTLL-VVGGISSLELWNMAENKS  749 (784)
Q Consensus       706 -~~i~~l~~~~~~I~sl~fspdg~~L~-s~s~dg~I~Iwdl~~~~~  749 (784)
                       +++..+..|...|.+++|+|++++|+ +++.|+.|+|||+.+...
T Consensus       311 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~  356 (357)
T 3i2n_A          311 VSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK  356 (357)
T ss_dssp             EEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred             cceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence             46778889999999999999999998 799999999999987653

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=2.2e-31  Score=299.76  Aligned_cols=270  Identities=23%  Similarity=0.466  Sum_probs=239.8

Q ss_pred             EEeEeecCCCce-EEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEc
Q 047260          499 EVGCIRSRNSKV-TCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWD  577 (784)
Q Consensus       499 ~i~~l~~H~~~V-~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWd  577 (784)
                      ....+.+|.+.| .|  +++++++|++|+.||.|+|||+.+++.+..+.+|...|++++|+  +++|++|+.||+|++||
T Consensus       110 ~~~~l~~h~~~v~~~--~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd  185 (445)
T 2ovr_B          110 SPKVLKGHDDHVITC--LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWN  185 (445)
T ss_dssp             CCEEEECSTTSCEEE--EEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEE
T ss_pred             eeEEecccCCCcEEE--EEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEE
Confidence            456688999876 55  44568999999999999999999999999999999999999997  66999999999999999


Q ss_pred             CCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEee---cCCeeEEEEecCCCEEEEEECCC
Q 047260          578 AANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHIT---KGGTAQVRFQPRIGQLLAAASDK  654 (784)
Q Consensus       578 l~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~---~~~v~~v~fsp~~~~Ll~~s~Dg  654 (784)
                      +.+++ ....+.+|...|.++.|+++   .+++++.||.|++||+++.+.+..+   ...+.++.+  ++..+++++.|+
T Consensus       186 ~~~~~-~~~~~~~h~~~v~~~~~~~~---~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg  259 (445)
T 2ovr_B          186 AETGE-CIHTLYGHTSTVRCMHLHEK---RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDF  259 (445)
T ss_dssp             TTTTE-EEEEECCCSSCEEEEEEETT---EEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTS
T ss_pred             CCcCc-EEEEECCCCCcEEEEEecCC---EEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCC
Confidence            99876 67778899999999999643   7899999999999999987776554   466788888  778999999999


Q ss_pred             cEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEE
Q 047260          655 VVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVV  733 (784)
Q Consensus       655 ~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~  733 (784)
                      .|++||+++++.+..+.+|...|.+++|  ++.++++++.+ .|++||+++++++..+..|...+.++.++  +.+++++
T Consensus       260 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~  335 (445)
T 2ovr_B          260 MVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSG  335 (445)
T ss_dssp             CEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEE
T ss_pred             EEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEE
Confidence            9999999999999999999999999999  78889988855 99999999999999999999988888875  5599999


Q ss_pred             ECCCeEEEEECCCCceE-Eecc---cCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          734 GGISSLELWNMAENKSM-TIAA---HENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       734 s~dg~I~Iwdl~~~~~~-~~~~---h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      +.||.|++||+.+++.+ .+..   |...|.+++|+  +++|++|+.||.|+|||
T Consensus       336 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd  388 (445)
T 2ovr_B          336 NADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWD  388 (445)
T ss_dssp             ETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEE
T ss_pred             eCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEE
Confidence            99999999999998877 4443   88999999996  67999999999999996

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=4.6e-32  Score=289.39  Aligned_cols=242  Identities=19%  Similarity=0.347  Sum_probs=207.9

Q ss_pred             eecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCC-cceeeeccCCCCCeEEEEEcCC-CCcEEEEEeCCCeEEEE
Q 047260          543 STPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANP-NFCSQAYTGHSSPIMSLDFHPK-KTDLFCFCDNDNEIQYW  620 (784)
Q Consensus       543 ~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~-~~~~~~~~~h~~~V~sl~~sp~-~~~ll~sgs~dg~I~iw  620 (784)
                      ..+.+|...|++++|+|++++|++|+.|++|+|||+... ..+...+.+|...|.+++|+++ ...+|++|+.|+.|++|
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW   82 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW   82 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence            456789999999999999999999999999999999753 2356778899999999999864 24589999999999999


Q ss_pred             eCCCCe--eE---EeecCCeeEEEEecC--CCEEEEEECCCcEEEEECCCCe--EEEEEeCCCCCEEEEEEcCC------
Q 047260          621 SINPFL--CT---HITKGGTAQVRFQPR--IGQLLAAASDKVVSIFDIETDR--QTHSLQGHAELVNYICWDTN------  685 (784)
Q Consensus       621 Dl~~~~--~~---~~~~~~v~~v~fsp~--~~~Ll~~s~Dg~I~IwDl~t~~--~i~~l~~h~~~V~sl~~spd------  685 (784)
                      |+++..  .+   ..+...+.+++|+|+  +..|++++.|+.|++||++++.  ....+.+|...|.+++|+|+      
T Consensus        83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~  162 (297)
T 2pm7_B           83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG  162 (297)
T ss_dssp             EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred             EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence            998653  22   234578999999997  7899999999999999998763  24567889999999999997      


Q ss_pred             -------CCEEEEEeCC-eEEEEeCCCCc----eEEEeccCCCceEEEEEecCC---CEEEEEECCCeEEEEECCCCc--
Q 047260          686 -------GDYLASVSQN-LVKVWSMASGE----CIQELSSNGNQFHSCVFHPSY---STLLVVGGISSLELWNMAENK--  748 (784)
Q Consensus       686 -------g~~Lasgsdd-~I~IwDl~t~~----~i~~l~~~~~~I~sl~fspdg---~~L~s~s~dg~I~Iwdl~~~~--  748 (784)
                             +++|++++.| .|+|||+++++    ++.++.+|...|.+++|+|++   .+|++++.|++|+|||+....  
T Consensus       163 ~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~  242 (297)
T 2pm7_B          163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGP  242 (297)
T ss_dssp             -------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC
T ss_pred             cCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCc
Confidence                   5789998866 99999998875    667888999999999999985   789999999999999998743  


Q ss_pred             -e-EEe--cccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          749 -S-MTI--AAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       749 -~-~~~--~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                       . ..+  ..|...|.+++|+|++++|++++.||.|+||+
T Consensus       243 ~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~  282 (297)
T 2pm7_B          243 WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK  282 (297)
T ss_dssp             CEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEE
T ss_pred             cceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEE
Confidence             1 122  46888999999999999999999999999995

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-31  Score=282.96  Aligned_cols=282  Identities=15%  Similarity=0.199  Sum_probs=236.9

Q ss_pred             CCCCCcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEE
Q 047260          435 EGTGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCH  514 (784)
Q Consensus       435 ~~~~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~  514 (784)
                      .++...+.++.+ ++... +.+|+.|+.+++|+....                          .....+..|...|.+++
T Consensus        15 ~~h~~~v~~~~~-~~~~~-l~s~~~dg~v~vw~~~~~--------------------------~~~~~~~~~~~~v~~~~   66 (313)
T 3odt_A           15 KGHDQDVRDVVA-VDDSK-VASVSRDGTVRLWSKDDQ--------------------------WLGTVVYTGQGFLNSVC   66 (313)
T ss_dssp             CCCSSCEEEEEE-EETTE-EEEEETTSEEEEEEESSS--------------------------EEEEEEEECSSCEEEEE
T ss_pred             hCCCCCcEEEEe-cCCCE-EEEEEcCCcEEEEECCCC--------------------------EEEEEeecCCccEEEEE
Confidence            344455666666 54444 557899999999987321                          24456678999999999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEECCCC---ceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCC
Q 047260          515 FSSDGKLLASSGHDRKVVLWNMDTL---QTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGH  591 (784)
Q Consensus       515 fspdg~~Lasgs~Dg~I~IWd~~t~---~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h  591 (784)
                      |+|++++|++++.||.|++|++...   +.+..+..|...|.+++|  ++++|++++.|+.|++||  . ......+..|
T Consensus        67 ~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~-~~~~~~~~~~  141 (313)
T 3odt_A           67 YDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--E-GSLVYNLQAH  141 (313)
T ss_dssp             EETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--T-TEEEEEEECC
T ss_pred             ECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--C-CcEEEecccC
Confidence            9999999999999999999998754   567778899999999999  577999999999999999  2 3366777889


Q ss_pred             CCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEe--ecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEE
Q 047260          592 SSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHI--TKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHS  669 (784)
Q Consensus       592 ~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~--~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~  669 (784)
                      ...|.++.|.|....++++++.|+.|++||.........  +...+.+++|+|++. +++++.|+.|++||+++++.+..
T Consensus       142 ~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~  220 (313)
T 3odt_A          142 NASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRT  220 (313)
T ss_dssp             SSCEEEEEEEETTTTEEEEEETTSCEEEEETTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEE
T ss_pred             CCceeEEEEccCCCCEEEEEECCCCEEEEecCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhh
Confidence            999999999995555888999999999999654333322  457889999999987 99999999999999999999999


Q ss_pred             EeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCce
Q 047260          670 LQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKS  749 (784)
Q Consensus       670 l~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~  749 (784)
                      +..|...|.+++|+|++.+++++.++.|++||+++++++..+..|...|.+++|+|++. +++++.||.|++||+.+++.
T Consensus       221 ~~~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~  299 (313)
T 3odt_A          221 YEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRW  299 (313)
T ss_dssp             EECCSSCEEEEEECTTSCEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGC
T ss_pred             hhcCCceEEEEEEecCCCEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCce
Confidence            99999999999999999644444466999999999999999999999999999999998 77899999999999998876


Q ss_pred             EE
Q 047260          750 MT  751 (784)
Q Consensus       750 ~~  751 (784)
                      ..
T Consensus       300 ~~  301 (313)
T 3odt_A          300 AS  301 (313)
T ss_dssp             CC
T ss_pred             ee
Confidence            53

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.9e-32  Score=296.68  Aligned_cols=283  Identities=17%  Similarity=0.257  Sum_probs=235.5

Q ss_pred             CCCCcccccccccC---CCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEe--ecCCCce
Q 047260          436 GTGSLASASNLLED---IDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCI--RSRNSKV  510 (784)
Q Consensus       436 ~~~~~~ss~~~~~~---~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l--~~H~~~V  510 (784)
                      ++...+.++.+.++   ...++.+++.++.+++|+......                       ...+..+  ..|...|
T Consensus        16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~-----------------------~~~~~~~~~~~~~~~v   72 (366)
T 3k26_A           16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGE-----------------------IRLLQSYVDADADENF   72 (366)
T ss_dssp             TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGC-----------------------EEEEEEEECSCTTCCE
T ss_pred             CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcE-----------------------EEeeeeccccCCCCcE
Confidence            44455667777653   455555666778999998754321                       1122222  2378899


Q ss_pred             EEEEEcCC----CCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEcc-CCCEEEEEeCCCeEEEEcCCCCccee
Q 047260          511 TCCHFSSD----GKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRP-NSSQLATASVDKSVRLWDAANPNFCS  585 (784)
Q Consensus       511 ~~l~fspd----g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fsp-dg~~Latgs~Dg~I~IWdl~~~~~~~  585 (784)
                      ++++|+|+    +.+|++|+.||.|+|||+.+++.+..+.+|...|++++|+| ++.+|++++.||.|++||+++++ ..
T Consensus        73 ~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~  151 (366)
T 3k26_A           73 YTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT-LV  151 (366)
T ss_dssp             EEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTE-EE
T ss_pred             EEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCe-EE
Confidence            99999998    67999999999999999999999999999999999999999 99999999999999999999876 44


Q ss_pred             eec---cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEE-------------------------------ee
Q 047260          586 QAY---TGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTH-------------------------------IT  631 (784)
Q Consensus       586 ~~~---~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~-------------------------------~~  631 (784)
                      ..+   .+|...|.+++|+|++. ++++++.|+.|++||+++.+...                               .+
T Consensus       152 ~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (366)
T 3k26_A          152 AIFGGVEGHRDEVLSADYDLLGE-KIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIH  230 (366)
T ss_dssp             EEECSTTSCSSCEEEEEECTTSS-EEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSC
T ss_pred             EEecccccccCceeEEEECCCCC-EEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCC
Confidence            444   68999999999999876 77888899999999998643321                               15


Q ss_pred             cCCeeEEEEecCCCEEEEEECCCcEEEEECCCCe--------------EEEEEeCCCCCEEEEEEcCC--CCEEEEEeCC
Q 047260          632 KGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDR--------------QTHSLQGHAELVNYICWDTN--GDYLASVSQN  695 (784)
Q Consensus       632 ~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~--------------~i~~l~~h~~~V~sl~~spd--g~~Lasgsdd  695 (784)
                      ...+.+++|+  +.++++++.|+.|++||+++..              .+..+..|...|.+++|+|+  +.+|++++.+
T Consensus       231 ~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~d  308 (366)
T 3k26_A          231 RNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQV  308 (366)
T ss_dssp             SSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTT
T ss_pred             cceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecC
Confidence            6788999998  6799999999999999998764              37788889999999999999  9999999865


Q ss_pred             -eEEEEeCCCCc----eEEEeccC--CCceEEEEEecCCCEEEEEECCCeEEEEECC
Q 047260          696 -LVKVWSMASGE----CIQELSSN--GNQFHSCVFHPSYSTLLVVGGISSLELWNMA  745 (784)
Q Consensus       696 -~I~IwDl~t~~----~i~~l~~~--~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~  745 (784)
                       .|++||+.+++    .+..+..|  ...|.+++|+|++++|++++.||.|++||+.
T Consensus       309 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          309 GKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             SCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             CcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence             99999999875    44577777  7899999999999999999999999999985

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=7.8e-33  Score=298.28  Aligned_cols=244  Identities=20%  Similarity=0.312  Sum_probs=203.5

Q ss_pred             EeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--eeeecCCCCCCeEEEEEcc--CCCEEEEEeCCCeEEEEc
Q 047260          502 CIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQ--TESTPEDHKSVVTDVRFRP--NSSQLATASVDKSVRLWD  577 (784)
Q Consensus       502 ~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~--~~~~l~~h~~~It~i~fsp--dg~~Latgs~Dg~I~IWd  577 (784)
                      .+.+|.+.|++++|+|+|++||+|+.|++|+|||+.++.  .+..+.+|...|++++|++  ++++|++|+.|++|+|||
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd   87 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR   87 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence            356899999999999999999999999999999998764  4677889999999999986  489999999999999999


Q ss_pred             CCCCc-ceeeeccCCCCCeEEEEEcCCC-CcEEEEEeCCCeEEEEeCCCCeeE---E---eecCCeeEEEEecC------
Q 047260          578 AANPN-FCSQAYTGHSSPIMSLDFHPKK-TDLFCFCDNDNEIQYWSINPFLCT---H---ITKGGTAQVRFQPR------  643 (784)
Q Consensus       578 l~~~~-~~~~~~~~h~~~V~sl~~sp~~-~~ll~sgs~dg~I~iwDl~~~~~~---~---~~~~~v~~v~fsp~------  643 (784)
                      ++++. .....+.+|...|.+++|+|+. ..+|++++.|+.|++||++.....   .   .+...+.+++|+|+      
T Consensus        88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  167 (316)
T 3bg1_A           88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL  167 (316)
T ss_dssp             CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred             CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence            98764 2455677899999999999983 458899999999999999865221   1   23456788999987      


Q ss_pred             -----------CCEEEEEECCCcEEEEECCCC---eEEEEEeCCCCCEEEEEEcCCC----CEEEEEeCC-eEEEEeCCC
Q 047260          644 -----------IGQLLAAASDKVVSIFDIETD---RQTHSLQGHAELVNYICWDTNG----DYLASVSQN-LVKVWSMAS  704 (784)
Q Consensus       644 -----------~~~Ll~~s~Dg~I~IwDl~t~---~~i~~l~~h~~~V~sl~~spdg----~~Lasgsdd-~I~IwDl~t  704 (784)
                                 +.+|++++.|+.|++||++..   +.+..+.+|...|.+++|+|++    .+|++++.| +|+|||+.+
T Consensus       168 ~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~  247 (316)
T 3bg1_A          168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD  247 (316)
T ss_dssp             ---CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred             cccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence                       368999999999999999765   4677788999999999999986    789999866 999999976


Q ss_pred             C---c-eEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECC
Q 047260          705 G---E-CIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMA  745 (784)
Q Consensus       705 ~---~-~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~  745 (784)
                      .   . ....+..|...|.+++|+|++.+|++++.|+.|+||+..
T Consensus       248 ~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          248 ASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             TTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             ccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence            3   1 223455678899999999999999999999999999975

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.9e-31  Score=294.10  Aligned_cols=269  Identities=17%  Similarity=0.294  Sum_probs=229.3

Q ss_pred             CceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEee-cCCCceEEEEEcCCCCEEEEEeCCC
Q 047260          451 DRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIR-SRNSKVTCCHFSSDGKLLASSGHDR  529 (784)
Q Consensus       451 ~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~-~H~~~V~~l~fspdg~~Lasgs~Dg  529 (784)
                      ..++ +++.|+.|++|+...+.                          ....+. .|...|++++|+|++++|++|+.||
T Consensus       104 ~~l~-~~~~d~~v~lw~~~~~~--------------------------~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg  156 (401)
T 4aez_A          104 LNVV-AVALERNVYVWNADSGS--------------------------VSALAETDESTYVASVKWSHDGSFLSVGLGNG  156 (401)
T ss_dssp             TSEE-EEEETTEEEEEETTTCC--------------------------EEEEEECCTTCCEEEEEECTTSSEEEEEETTS
T ss_pred             CCEE-EEECCCeEEEeeCCCCc--------------------------EeEeeecCCCCCEEEEEECCCCCEEEEECCCC
Confidence            4455 57799999999774322                          111222 3889999999999999999999999


Q ss_pred             eEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEE
Q 047260          530 KVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFC  609 (784)
Q Consensus       530 ~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~  609 (784)
                      .|+|||+.+++.+..+..|...|.+++|  ++++|++++.||.|++||++........+.+|...|.+++|+|++. +|+
T Consensus       157 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~  233 (401)
T 4aez_A          157 LVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGL-QLA  233 (401)
T ss_dssp             CEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEE
T ss_pred             eEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCC-EEE
Confidence            9999999999999999999999999999  4679999999999999999966667788889999999999999876 788


Q ss_pred             EEeCCCeEEEEeCCCCeeEEee---cCCeeEEEEecCCCEEEEEE---CCCcEEEEECCCCeEEEEEeCCCCCEEEEEEc
Q 047260          610 FCDNDNEIQYWSINPFLCTHIT---KGGTAQVRFQPRIGQLLAAA---SDKVVSIFDIETDRQTHSLQGHAELVNYICWD  683 (784)
Q Consensus       610 sgs~dg~I~iwDl~~~~~~~~~---~~~v~~v~fsp~~~~Ll~~s---~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~s  683 (784)
                      +++.|+.|++||+++......+   ...+.+++|+|++..+++.+   .|+.|++||+++++.+..+. +...|.+++|+
T Consensus       234 s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s  312 (401)
T 4aez_A          234 SGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWS  312 (401)
T ss_dssp             EEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEC
T ss_pred             EEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEEC
Confidence            8999999999999987766544   46789999999887666654   59999999999999988886 67789999999


Q ss_pred             CCCCEEEEEe---CCeEEEEeCCCCceEE--EeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE
Q 047260          684 TNGDYLASVS---QNLVKVWSMASGECIQ--ELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM  750 (784)
Q Consensus       684 pdg~~Lasgs---dd~I~IwDl~t~~~i~--~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~  750 (784)
                      |++.+|++++   ++.|+|||+.++....  .+..|...|.+++|+|++.+|++++.||.|++||+.+++.+
T Consensus       313 ~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~  384 (401)
T 4aez_A          313 PHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHV  384 (401)
T ss_dssp             SSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC----
T ss_pred             CCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccc
Confidence            9999999854   5599999999975544  46789999999999999999999999999999999998766

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=2.8e-31  Score=297.35  Aligned_cols=271  Identities=18%  Similarity=0.293  Sum_probs=233.3

Q ss_pred             CceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCCCEEEEEeCCCe
Q 047260          451 DRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRK  530 (784)
Q Consensus       451 ~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~  530 (784)
                      ..+|++| .|++|++|+...+.                        ...+..+.+|...|+||+|+|+|++||+|+.||.
T Consensus       116 ~n~lAvg-ld~tV~lWd~~tg~------------------------~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~  170 (420)
T 4gga_A          116 GNVLAVA-LDNSVYLWSASSGD------------------------ILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAE  170 (420)
T ss_dssp             TSEEEEE-ETTEEEEEETTTCC------------------------EEEEEECCSTTCCEEEEEECTTSSEEEEEETTSC
T ss_pred             CCEEEEE-eCCEEEEEECCCCC------------------------EEEEEEecCCCCcEEEEEECCCCCEEEEEECCCe
Confidence            3467766 69999999774332                        1223345678899999999999999999999999


Q ss_pred             EEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEE
Q 047260          531 VVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCF  610 (784)
Q Consensus       531 I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~s  610 (784)
                      |+|||+.+++.+..+.+|...|.+++|+  +.+|++|+.|+.+++||..........+.+|...+..+.|+|++. ++++
T Consensus       171 v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~-~l~s  247 (420)
T 4gga_A          171 VQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR-HLAS  247 (420)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEEE
T ss_pred             EEEEEcCCCcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCC-eeee
Confidence            9999999999999999999999999885  679999999999999999987777888899999999999999987 7888


Q ss_pred             EeCCCeEEEEeCCCCe-------eEEeecCCeeEEEEecCCCEEE-EE--ECCCcEEEEECCCCeEEEEEeCCCCCEEEE
Q 047260          611 CDNDNEIQYWSINPFL-------CTHITKGGTAQVRFQPRIGQLL-AA--ASDKVVSIFDIETDRQTHSLQGHAELVNYI  680 (784)
Q Consensus       611 gs~dg~I~iwDl~~~~-------~~~~~~~~v~~v~fsp~~~~Ll-~~--s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl  680 (784)
                      ++.|+.|++||.....       ....+...+.+++|+|.+..++ ++  +.|+.|++||+++++++..+.. ...+.++
T Consensus       248 ~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~-~~~v~~~  326 (420)
T 4gga_A          248 GGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA-HSQVCSI  326 (420)
T ss_dssp             EETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEEC-SSCEEEE
T ss_pred             eeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecc-ccceeee
Confidence            9999999999997543       2334557899999999876554 33  3589999999999999988874 4578899


Q ss_pred             EEcCCCCEEEEEe---CCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE
Q 047260          681 CWDTNGDYLASVS---QNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM  750 (784)
Q Consensus       681 ~~spdg~~Lasgs---dd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~  750 (784)
                      .|++++..+++++   ++.|+|||+.+++++.++.+|...|.+++|+|++.+|++++.|++|+|||+.+....
T Consensus       327 ~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~  399 (420)
T 4gga_A          327 LWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPA  399 (420)
T ss_dssp             EEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC
T ss_pred             eecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCcc
Confidence            9999999988775   459999999999999999999999999999999999999999999999999876544

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.2e-31  Score=294.96  Aligned_cols=282  Identities=11%  Similarity=0.075  Sum_probs=228.1

Q ss_pred             CCCCCcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEE
Q 047260          435 EGTGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCH  514 (784)
Q Consensus       435 ~~~~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~  514 (784)
                      .++...+.+..+.++...++.+|+.|+.+++|+.....                        ......+.+|.+.|++++
T Consensus        70 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~------------------------~~~~~~~~~h~~~v~~~~  125 (383)
T 3ei3_B           70 SPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQN------------------------KTSFIQGMGPGDAITGMK  125 (383)
T ss_dssp             CCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTT------------------------CEEEECCCSTTCBEEEEE
T ss_pred             cCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcc------------------------cceeeecCCcCCceeEEE
Confidence            44455567777877775777789999999999774322                        112222347999999999


Q ss_pred             EcC-CCCEEEEEeCCCeEEEEECCCCceeeecCC---CCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccC
Q 047260          515 FSS-DGKLLASSGHDRKVVLWNMDTLQTESTPED---HKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTG  590 (784)
Q Consensus       515 fsp-dg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~---h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~  590 (784)
                      |+| ++++|++++.|+.|++||+.+ ..+..+..   |...|.+++|+|++++|++++.|+.|++||++ ++ ....+.+
T Consensus       126 ~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~-~~~~~~~  202 (383)
T 3ei3_B          126 FNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GH-EIFKEKL  202 (383)
T ss_dssp             EETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SC-EEEEEEC
T ss_pred             eCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CC-EEEEecc
Confidence            999 789999999999999999996 44455543   44889999999999999999999999999995 33 6677889


Q ss_pred             CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCC----CeeEE--eecCCeeEEEEec-CCCEEEEEECCCcEEEEECCC
Q 047260          591 HSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINP----FLCTH--ITKGGTAQVRFQP-RIGQLLAAASDKVVSIFDIET  663 (784)
Q Consensus       591 h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~----~~~~~--~~~~~v~~v~fsp-~~~~Ll~~s~Dg~I~IwDl~t  663 (784)
                      |...|.+++|+|++..++++++.|+.|++||+++    ..++.  .+...+.+++|+| ++.+|++++.|+.|++||+++
T Consensus       203 h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~  282 (383)
T 3ei3_B          203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYD  282 (383)
T ss_dssp             SSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTB
T ss_pred             CCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCC
Confidence            9999999999999988999999999999999986    44433  4568899999999 999999999999999999998


Q ss_pred             CeEEEEEeCCC-----------------CCEEEEEEcCCCCEEEEEe-CCeEEEEeCCCCceEEEecc--CCCceEEEEE
Q 047260          664 DRQTHSLQGHA-----------------ELVNYICWDTNGDYLASVS-QNLVKVWSMASGECIQELSS--NGNQFHSCVF  723 (784)
Q Consensus       664 ~~~i~~l~~h~-----------------~~V~sl~~spdg~~Lasgs-dd~I~IwDl~t~~~i~~l~~--~~~~I~sl~f  723 (784)
                      ++.+..+.+|.                 ..+..++|+|++++  +++ ++.|+|||+.+++++..+..  +...+.+++|
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~  360 (383)
T 3ei3_B          283 WSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKF  360 (383)
T ss_dssp             TTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEE
T ss_pred             CccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEE
Confidence            87766665442                 23344555666655  333 55999999999999999987  4566778899


Q ss_pred             ecCCCEEEEEECCCeEEEEECCC
Q 047260          724 HPSYSTLLVVGGISSLELWNMAE  746 (784)
Q Consensus       724 spdg~~L~s~s~dg~I~Iwdl~~  746 (784)
                      +|++.+|++++ |+.|+|||+++
T Consensus       361 s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          361 SPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             CTTSSEEEEEE-TTEEEEEECC-
T ss_pred             ecCccEEEEec-CCcEEEEecCC
Confidence            99999999997 89999999875

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=2.3e-31  Score=289.66  Aligned_cols=282  Identities=16%  Similarity=0.205  Sum_probs=236.4

Q ss_pred             ccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCCC
Q 047260          441 ASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGK  520 (784)
Q Consensus       441 ~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~  520 (784)
                      +.+..+.++.. ++.+++.|+.+++|+....                        .+..+..+.+|...|++++|+|+++
T Consensus        11 i~~~~~s~~~~-~l~~~~~d~~v~i~~~~~~------------------------~~~~~~~~~~h~~~v~~~~~~~~~~   65 (372)
T 1k8k_C           11 ISCHAWNKDRT-QIAICPNNHEVHIYEKSGN------------------------KWVQVHELKEHNGQVTGVDWAPDSN   65 (372)
T ss_dssp             CCEEEECTTSS-EEEEECSSSEEEEEEEETT------------------------EEEEEEEEECCSSCEEEEEEETTTT
T ss_pred             eEEEEECCCCC-EEEEEeCCCEEEEEeCCCC------------------------cEEeeeeecCCCCcccEEEEeCCCC
Confidence            45555655554 5557888999999977332                        1346777889999999999999999


Q ss_pred             EEEEEeCCCeEEEEECCCCceee--ecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcc---eeeeccCCCCCe
Q 047260          521 LLASSGHDRKVVLWNMDTLQTES--TPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNF---CSQAYTGHSSPI  595 (784)
Q Consensus       521 ~Lasgs~Dg~I~IWd~~t~~~~~--~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~---~~~~~~~h~~~V  595 (784)
                      +|++++.||.|++||+.+++...  .+..|...|++++|+|++++|++++.|+.|++||++....   ......+|...|
T Consensus        66 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i  145 (372)
T 1k8k_C           66 RIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTV  145 (372)
T ss_dssp             EEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCE
T ss_pred             EEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCe
Confidence            99999999999999998876443  3467999999999999999999999999999999987653   334446789999


Q ss_pred             EEEEEcCCCCcEEEEEeCCCeEEEEeCC------------------CCeeEEee---cCCeeEEEEecCCCEEEEEECCC
Q 047260          596 MSLDFHPKKTDLFCFCDNDNEIQYWSIN------------------PFLCTHIT---KGGTAQVRFQPRIGQLLAAASDK  654 (784)
Q Consensus       596 ~sl~~sp~~~~ll~sgs~dg~I~iwDl~------------------~~~~~~~~---~~~v~~v~fsp~~~~Ll~~s~Dg  654 (784)
                      .+++|+|++. ++++++.|+.|++||++                  ....+..+   ...+.+++|+|++.+|++++.|+
T Consensus       146 ~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  224 (372)
T 1k8k_C          146 LSLDWHPNSV-LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDS  224 (372)
T ss_dssp             EEEEECTTSS-EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTT
T ss_pred             eEEEEcCCCC-EEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCC
Confidence            9999999876 78889999999999963                  44555544   46799999999999999999999


Q ss_pred             cEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCC--Cce-------------------------
Q 047260          655 VVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMAS--GEC-------------------------  707 (784)
Q Consensus       655 ~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t--~~~-------------------------  707 (784)
                      .|++||+++++.+..+..|...|.+++|+|++.+|+++.++.|++||+.+  ++.                         
T Consensus       225 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (372)
T 1k8k_C          225 TVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQN  304 (372)
T ss_dssp             EEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHH
T ss_pred             EEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhh
Confidence            99999999999999999999999999999999999999777999999987  421                         


Q ss_pred             -------E------EEe-ccCCCceEEEEEe-cCC---CEEEEEECCCeEEEEECCCCc
Q 047260          708 -------I------QEL-SSNGNQFHSCVFH-PSY---STLLVVGGISSLELWNMAENK  748 (784)
Q Consensus       708 -------i------~~l-~~~~~~I~sl~fs-pdg---~~L~s~s~dg~I~Iwdl~~~~  748 (784)
                             .      ..+ .+|...|.+++|+ +++   .+|++++.||.|++||+.+++
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~  363 (372)
T 1k8k_C          305 LDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE  363 (372)
T ss_dssp             CCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred             cccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence                   0      223 3788999999976 666   899999999999999987644

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=5.6e-31  Score=289.55  Aligned_cols=327  Identities=16%  Similarity=0.263  Sum_probs=235.5

Q ss_pred             CCCCcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEe-----EeecCCCce
Q 047260          436 GTGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVG-----CIRSRNSKV  510 (784)
Q Consensus       436 ~~~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~-----~l~~H~~~V  510 (784)
                      ++...+.+..+.+....++.+|+.|+.+++|+.........+                  ......     ...+|...|
T Consensus        41 ~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~v  102 (408)
T 4a11_B           41 IHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYY------------------TCKAVCSIGRDHPDVHRYSV  102 (408)
T ss_dssp             CCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCE------------------EECEEEEECTTCTTCCSSCE
T ss_pred             ccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceE------------------eccccccccccccccCCCcE
Confidence            345566777777734556667889999999988554322111                  111111     124599999


Q ss_pred             EEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccC---CCEEEEEeCCCeEEEEcCCCCcceee
Q 047260          511 TCCHFSS-DGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPN---SSQLATASVDKSVRLWDAANPNFCSQ  586 (784)
Q Consensus       511 ~~l~fsp-dg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspd---g~~Latgs~Dg~I~IWdl~~~~~~~~  586 (784)
                      ++++|+| ++.+|++++.||.|++||+.+++....+. +...+.++.|++.   +.+|++++.|+.|++||++++. ...
T Consensus       103 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~-~~~  180 (408)
T 4a11_B          103 ETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS-CSH  180 (408)
T ss_dssp             EEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC-CCE
T ss_pred             EEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc-eee
Confidence            9999999 77899999999999999999998888875 7889999999984   4599999999999999999876 567


Q ss_pred             eccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe-eE------------------EeecCCeeEEEEecCCCEE
Q 047260          587 AYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFL-CT------------------HITKGGTAQVRFQPRIGQL  647 (784)
Q Consensus       587 ~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~-~~------------------~~~~~~v~~v~fsp~~~~L  647 (784)
                      .+.+|...|.+++|+|++..++++++.||.|++||++... +.                  ..+...+.+++|+|++.+|
T Consensus       181 ~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  260 (408)
T 4a11_B          181 ILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHL  260 (408)
T ss_dssp             EECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEE
T ss_pred             eecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEE
Confidence            7788999999999999999889999999999999997543 11                  2345678999999999999


Q ss_pred             EEEECCCcEEEEECCCCeEEEEEeCC------CCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEEEeccCCCceEEE
Q 047260          648 LAAASDKVVSIFDIETDRQTHSLQGH------AELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELSSNGNQFHSC  721 (784)
Q Consensus       648 l~~s~Dg~I~IwDl~t~~~i~~l~~h------~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~~l~~~~~~I~sl  721 (784)
                      ++++.|+.|++||+++++....+..+      ......+.......+++++.++.|++||+.+++++..+.+|...|.++
T Consensus       261 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~  340 (408)
T 4a11_B          261 LTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCC  340 (408)
T ss_dssp             EEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred             EEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEE
Confidence            99999999999999988765544322      112223333445667777778899999999999999999999999999


Q ss_pred             EEecCCCEEEEEECCCeEEEEECCCCceEEecccCCceEEEEEeC-CCCEEEEEECCCcEEEeC
Q 047260          722 VFHPSYSTLLVVGGISSLELWNMAENKSMTIAAHENIISALAQSP-VTGMVASASHDSSVKLWK  784 (784)
Q Consensus       722 ~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~~~h~~~V~slafsp-dg~~LaSgs~DG~V~IWd  784 (784)
                      +|+|++.+|++++.||.|++||+.+.+.+.........  ..+.+ ....+.+++.|+.|++|+
T Consensus       341 ~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~W~  402 (408)
T 4a11_B          341 VFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK--SQLNPAFEDAWSSSDEEGGTSAWS  402 (408)
T ss_dssp             EEETTTTEEEEEETTSCEEEEEECC---------------------------------------
T ss_pred             EEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEec--cccccccceeecccCccCceeecC
Confidence            99999999999999999999999998876432222222  22233 334566777899999995

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-31  Score=291.56  Aligned_cols=249  Identities=19%  Similarity=0.288  Sum_probs=206.2

Q ss_pred             EEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECC--CCceeeecCCCCCCeEEEEEccC--CCEEEEEeCCCeEE
Q 047260          499 EVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMD--TLQTESTPEDHKSVVTDVRFRPN--SSQLATASVDKSVR  574 (784)
Q Consensus       499 ~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~--t~~~~~~l~~h~~~It~i~fspd--g~~Latgs~Dg~I~  574 (784)
                      .+..+.+|.+.|++++|+|++++||+|+.||.|+|||+.  +.+.+..+.+|...|++++|+++  +++|++++.||.|+
T Consensus         3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~   82 (379)
T 3jrp_A            3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL   82 (379)
T ss_dssp             --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence            345678999999999999999999999999999999998  66777888999999999999976  99999999999999


Q ss_pred             EEcCCCCcc-eeeeccCCCCCeEEEEEcCCC-CcEEEEEeCCCeEEEEeCCCCeeEEeecCCeeEEEEecCCCEEEEEEC
Q 047260          575 LWDAANPNF-CSQAYTGHSSPIMSLDFHPKK-TDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAAS  652 (784)
Q Consensus       575 IWdl~~~~~-~~~~~~~h~~~V~sl~~sp~~-~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v~~v~fsp~~~~Ll~~s~  652 (784)
                      |||+.++.. ....+..|...|.+++|+|+. ..++++++.|+.|++||++....                         
T Consensus        83 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~-------------------------  137 (379)
T 3jrp_A           83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT-------------------------  137 (379)
T ss_dssp             EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC-------------------------
T ss_pred             EEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc-------------------------
Confidence            999988652 455566788888888888872 22555666666666666553210                         


Q ss_pred             CCcEEEEECCCCeEEEEEeCCCCCEEEEEEcC-------------CCCEEEEEeCC-eEEEEeCCCCc----eEEEeccC
Q 047260          653 DKVVSIFDIETDRQTHSLQGHAELVNYICWDT-------------NGDYLASVSQN-LVKVWSMASGE----CIQELSSN  714 (784)
Q Consensus       653 Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~sp-------------dg~~Lasgsdd-~I~IwDl~t~~----~i~~l~~~  714 (784)
                                  .....+..|...|.+++|+|             ++.+|++++.+ .|++||++++.    ++..+..|
T Consensus       138 ------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h  205 (379)
T 3jrp_A          138 ------------TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH  205 (379)
T ss_dssp             ------------CCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC
T ss_pred             ------------eeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecc
Confidence                        12234557889999999999             69999999865 99999998764    55677889


Q ss_pred             CCceEEEEEecC---CCEEEEEECCCeEEEEECCCCc---e-E--EecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          715 GNQFHSCVFHPS---YSTLLVVGGISSLELWNMAENK---S-M--TIAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       715 ~~~I~sl~fspd---g~~L~s~s~dg~I~Iwdl~~~~---~-~--~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      ...|.+++|+|+   +.+|++++.||.|++||+.++.   . .  ....|...|.+++|+|++++|++++.||.|+|||
T Consensus       206 ~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~  284 (379)
T 3jrp_A          206 SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK  284 (379)
T ss_dssp             SSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEE
T ss_pred             cCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEe
Confidence            999999999999   8999999999999999999874   1 2  2334889999999999999999999999999996

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1e-31  Score=298.37  Aligned_cols=275  Identities=14%  Similarity=0.229  Sum_probs=232.5

Q ss_pred             CceEEEEEcCCCCEE-EEEeCCCeEEEEECCCC----ceeeecCCCCCCeEEEEEcc-CCCEEEEEeCCCeEEEEcCCCC
Q 047260          508 SKVTCCHFSSDGKLL-ASSGHDRKVVLWNMDTL----QTESTPEDHKSVVTDVRFRP-NSSQLATASVDKSVRLWDAANP  581 (784)
Q Consensus       508 ~~V~~l~fspdg~~L-asgs~Dg~I~IWd~~t~----~~~~~l~~h~~~It~i~fsp-dg~~Latgs~Dg~I~IWdl~~~  581 (784)
                      ....+++++|+...+ ++++.||.|+||++...    ..+..+.+|...|++++|+| ++++|++|+.||+|+|||+.++
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~  114 (402)
T 2aq5_A           35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDG  114 (402)
T ss_dssp             CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTT
T ss_pred             cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCC
Confidence            345568899876544 45788999999999654    34456778999999999999 9999999999999999999886


Q ss_pred             c------ceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEee-----cCCeeEEEEecCCCEEEEE
Q 047260          582 N------FCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHIT-----KGGTAQVRFQPRIGQLLAA  650 (784)
Q Consensus       582 ~------~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~-----~~~v~~v~fsp~~~~Ll~~  650 (784)
                      .      .....+.+|...|.+++|+|++..++++++.|+.|++||+++.+.+..+     ...+.+++|+|++..|+++
T Consensus       115 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  194 (402)
T 2aq5_A          115 GLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTS  194 (402)
T ss_dssp             CCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEE
T ss_pred             CCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEE
Confidence            3      3566778999999999999998779999999999999999998877665     4678999999999999999


Q ss_pred             ECCCcEEEEECCCCeEEEEE-eCCCCC-EEEEEEcCCCCEEEEE---e-CCeEEEEeCCCCce-EEEec-cCCCceEEEE
Q 047260          651 ASDKVVSIFDIETDRQTHSL-QGHAEL-VNYICWDTNGDYLASV---S-QNLVKVWSMASGEC-IQELS-SNGNQFHSCV  722 (784)
Q Consensus       651 s~Dg~I~IwDl~t~~~i~~l-~~h~~~-V~sl~~spdg~~Lasg---s-dd~I~IwDl~t~~~-i~~l~-~~~~~I~sl~  722 (784)
                      +.|+.|++||+++++.+..+ ..|... +.+++|+|++.+|+++   + ++.|++||+++++. +.... .+...+.+++
T Consensus       195 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~  274 (402)
T 2aq5_A          195 CRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPF  274 (402)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEE
T ss_pred             ecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEE
Confidence            99999999999999999988 678775 8999999999999998   4 44999999998754 33333 4667899999


Q ss_pred             EecCCCEEEEEE-CCCeEEEEECCCCce--EEec--ccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          723 FHPSYSTLLVVG-GISSLELWNMAENKS--MTIA--AHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       723 fspdg~~L~s~s-~dg~I~Iwdl~~~~~--~~~~--~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      |+|++.+|++++ .|+.|++||+.+++.  ..+.  .|...|.+++|+|++.++++  .|+.+++|+
T Consensus       275 ~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~  339 (402)
T 2aq5_A          275 FDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYK  339 (402)
T ss_dssp             EETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEE
T ss_pred             EcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEE
Confidence            999999997655 699999999998873  2333  36699999999999988775  567899995

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=4.3e-32  Score=305.54  Aligned_cols=284  Identities=12%  Similarity=0.091  Sum_probs=229.0

Q ss_pred             CcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcC-
Q 047260          439 SLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSS-  517 (784)
Q Consensus       439 ~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fsp-  517 (784)
                      ..+.++.+.+....++++|+.|++|++|+.....                        ...+..+.+|.+.|++|+|+| 
T Consensus       120 ~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~------------------------~~~~~~~~gH~~~V~~l~f~p~  175 (435)
T 4e54_B          120 RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKD------------------------KPTFIKGIGAGGSITGLKFNPL  175 (435)
T ss_dssp             SCEEEEEECSSCTTCEEEEETTSCEEEECSSCCS------------------------CCEEECCCSSSCCCCEEEECSS
T ss_pred             CCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCC------------------------ceeEEEccCCCCCEEEEEEeCC
Confidence            3466777888777888899999999999764322                        112334568999999999998 


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCceeeecC--CCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCe
Q 047260          518 DGKLLASSGHDRKVVLWNMDTLQTESTPE--DHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPI  595 (784)
Q Consensus       518 dg~~Lasgs~Dg~I~IWd~~t~~~~~~l~--~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V  595 (784)
                      ++.+|++|+.||+|+|||+++........  .+...+.+++|+|++.+|++|+.||.|++||++..  ....+.+|...|
T Consensus       176 ~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~--~~~~~~~h~~~v  253 (435)
T 4e54_B          176 NTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK--ELWNLRMHKKKV  253 (435)
T ss_dssp             CTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC--BCCCSBCCSSCE
T ss_pred             CCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc--eeEEEecccceE
Confidence            78999999999999999998765443333  34456889999999999999999999999999753  456778999999


Q ss_pred             EEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeE------EeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEE
Q 047260          596 MSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCT------HITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHS  669 (784)
Q Consensus       596 ~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~------~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~  669 (784)
                      .+++|+|++..++++++.|+.|++||++.....      ..+...|.+++|+|++.+|++++.|+.|+|||++++.....
T Consensus       254 ~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~  333 (435)
T 4e54_B          254 THVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLG  333 (435)
T ss_dssp             EEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEE
T ss_pred             EeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceE
Confidence            999999999999999999999999999864432      23457899999999999999999999999999999988877


Q ss_pred             EeCCCC------CEEEEEEcCCCCEEEEEe------------CC-eEEEEeCCCCceEEEec-cCCCceEEE-EEecCCC
Q 047260          670 LQGHAE------LVNYICWDTNGDYLASVS------------QN-LVKVWSMASGECIQELS-SNGNQFHSC-VFHPSYS  728 (784)
Q Consensus       670 l~~h~~------~V~sl~~spdg~~Lasgs------------dd-~I~IwDl~t~~~i~~l~-~~~~~I~sl-~fspdg~  728 (784)
                      +..|..      .+..+.|+|++.+++++.            ++ .|++||..+++++..+. .|...|.++ +|+|++.
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~  413 (435)
T 4e54_B          334 LIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGD  413 (435)
T ss_dssp             ECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSS
T ss_pred             EecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCC
Confidence            766543      234567888877777664            22 79999999999988875 567778887 6999999


Q ss_pred             EEEEEECCCeEEEEECCCCce
Q 047260          729 TLLVVGGISSLELWNMAENKS  749 (784)
Q Consensus       729 ~L~s~s~dg~I~Iwdl~~~~~  749 (784)
                      +|++++ |+.|+|||+.+++.
T Consensus       414 ~lasg~-d~~i~iW~~~~gk~  433 (435)
T 4e54_B          414 TLASAM-GYHILIWSQQEART  433 (435)
T ss_dssp             CEEEEC-SSEEEECCCC----
T ss_pred             EEEEEc-CCcEEEEECCcCee
Confidence            888765 78999999998764

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=8e-32  Score=295.22  Aligned_cols=278  Identities=15%  Similarity=0.150  Sum_probs=219.0

Q ss_pred             ccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCCC
Q 047260          441 ASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGK  520 (784)
Q Consensus       441 ~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~  520 (784)
                      +.+..+.++.. ++.+|+.|+.+++|+.....                        +..+..+.+|.+.|++++|+|+++
T Consensus        14 v~~~~~s~~g~-~l~~~~~d~~i~iw~~~~~~------------------------~~~~~~~~~h~~~v~~~~~s~~~~   68 (377)
T 3dwl_C           14 SYEHAFNSQRT-EFVTTTATNQVELYEQDGNG------------------------WKHARTFSDHDKIVTCVDWAPKSN   68 (377)
T ss_dssp             CSCCEECSSSS-EEECCCSSSCBCEEEEETTE------------------------EEECCCBCCCSSCEEEEEECTTTC
T ss_pred             EEEEEECCCCC-EEEEecCCCEEEEEEccCCc------------------------eEEEEEEecCCceEEEEEEeCCCC
Confidence            45566666555 55578899999999874321                        234556778999999999999999


Q ss_pred             EEEEEeCCCeEEEEECCCCc---eeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcc--eeeeccC-CCCC
Q 047260          521 LLASSGHDRKVVLWNMDTLQ---TESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNF--CSQAYTG-HSSP  594 (784)
Q Consensus       521 ~Lasgs~Dg~I~IWd~~t~~---~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~--~~~~~~~-h~~~  594 (784)
                      +|++++.|+.|+|||+.+++   ....+..|...|++++|+|++++|++++.|+.|++||+++...  +...+.+ |...
T Consensus        69 ~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~  148 (377)
T 3dwl_C           69 RIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRST  148 (377)
T ss_dssp             CEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSC
T ss_pred             EEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCC
Confidence            99999999999999999876   6777889999999999999999999999999999999998653  3455666 9999


Q ss_pred             eEEEEEcCCCCcEEEEEeCCCeEEEEeCCC------------------CeeEE--eecCCeeEEEEecCCCEEEEEECCC
Q 047260          595 IMSLDFHPKKTDLFCFCDNDNEIQYWSINP------------------FLCTH--ITKGGTAQVRFQPRIGQLLAAASDK  654 (784)
Q Consensus       595 V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~------------------~~~~~--~~~~~v~~v~fsp~~~~Ll~~s~Dg  654 (784)
                      |.+++|+|++. +|++++.|+.|++||++.                  ..++.  .+...+.+++|+|++.+|++++.|+
T Consensus       149 v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~  227 (377)
T 3dwl_C          149 ILSLDWHPNNV-LLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDS  227 (377)
T ss_dssp             EEEEEECTTSS-EEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTT
T ss_pred             eEEEEEcCCCC-EEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCC
Confidence            99999999876 888899999999999852                  22333  3456799999999999999999999


Q ss_pred             cEEEEECCCCeE----EEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCc--e---------------------
Q 047260          655 VVSIFDIETDRQ----THSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGE--C---------------------  707 (784)
Q Consensus       655 ~I~IwDl~t~~~----i~~l~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~--~---------------------  707 (784)
                      .|++||+++++.    +..+.+|...|.+++|+|++++|++++++.+.+|+.....  .                     
T Consensus       228 ~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (377)
T 3dwl_C          228 SVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGE  307 (377)
T ss_dssp             EEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEECCCC---CCSBCCCSCCCCCCBSSSSSBCC
T ss_pred             cEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEEeCCCceEEEeeeccccccccccccccccc
Confidence            999999999876    7788899999999999999999999998877788775211  0                     


Q ss_pred             ----E---------EEe----------------ccCCCceEEEEEecCCC----EEEEEECCCeEEEEEC
Q 047260          708 ----I---------QEL----------------SSNGNQFHSCVFHPSYS----TLLVVGGISSLELWNM  744 (784)
Q Consensus       708 ----i---------~~l----------------~~~~~~I~sl~fspdg~----~L~s~s~dg~I~Iwdl  744 (784)
                          .         ..+                ..|...|.++.+.+...    .|++++.||.|+|||+
T Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          308 GREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             CCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             ccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence                0         111                12888999999766543    5999999999999985

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=7.5e-32  Score=290.58  Aligned_cols=241  Identities=20%  Similarity=0.340  Sum_probs=201.3

Q ss_pred             ecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcc-eeeeccCCCCCeEEEEEcCC-CCcEEEEEeCCCeEEEEe
Q 047260          544 TPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNF-CSQAYTGHSSPIMSLDFHPK-KTDLFCFCDNDNEIQYWS  621 (784)
Q Consensus       544 ~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~-~~~~~~~h~~~V~sl~~sp~-~~~ll~sgs~dg~I~iwD  621 (784)
                      .+.+|.+.|++++|+|++++|++|+.|++|+|||+.++.. ....+.+|...|.+++|++. ...+|++|+.|+.|++||
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd   87 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR   87 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence            4568999999999999999999999999999999987642 45678899999999999864 345889999999999999


Q ss_pred             CCCCe--eEEe---ecCCeeEEEEecC--CCEEEEEECCCcEEEEECCCCeE---EEEEeCCCCCEEEEEEcCC------
Q 047260          622 INPFL--CTHI---TKGGTAQVRFQPR--IGQLLAAASDKVVSIFDIETDRQ---THSLQGHAELVNYICWDTN------  685 (784)
Q Consensus       622 l~~~~--~~~~---~~~~v~~v~fsp~--~~~Ll~~s~Dg~I~IwDl~t~~~---i~~l~~h~~~V~sl~~spd------  685 (784)
                      +++..  ....   +...+.+++|+|+  +..|++++.|+.|++||++.+..   ...+.+|...|.+++|+|+      
T Consensus        88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  167 (316)
T 3bg1_A           88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL  167 (316)
T ss_dssp             CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred             CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence            98753  3333   4577999999998  77899999999999999987632   3445678999999999997      


Q ss_pred             -----------CCEEEEEeCC-eEEEEeCCCC---ceEEEeccCCCceEEEEEecCC----CEEEEEECCCeEEEEECCC
Q 047260          686 -----------GDYLASVSQN-LVKVWSMASG---ECIQELSSNGNQFHSCVFHPSY----STLLVVGGISSLELWNMAE  746 (784)
Q Consensus       686 -----------g~~Lasgsdd-~I~IwDl~t~---~~i~~l~~~~~~I~sl~fspdg----~~L~s~s~dg~I~Iwdl~~  746 (784)
                                 +.+|++++.| .|+|||++..   +++..+.+|...|.+++|+|++    .+|++++.|++|+|||+.+
T Consensus       168 ~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~  247 (316)
T 3bg1_A          168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD  247 (316)
T ss_dssp             ---CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred             cccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence                       4688888865 9999999765   4677888999999999999986    7899999999999999876


Q ss_pred             Cc-----eEEecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          747 NK-----SMTIAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       747 ~~-----~~~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      ..     ...+..|...|.+++|+|++++|++++.||.|+||+
T Consensus       248 ~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~  290 (316)
T 3bg1_A          248 ASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWK  290 (316)
T ss_dssp             TTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEE
T ss_pred             ccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEE
Confidence            31     124567899999999999999999999999999996

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.98  E-value=9.9e-30  Score=270.50  Aligned_cols=268  Identities=19%  Similarity=0.297  Sum_probs=227.7

Q ss_pred             ceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeE
Q 047260          452 RFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKV  531 (784)
Q Consensus       452 ~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I  531 (784)
                      .+|++| .|++|++|+...+.                        ...+..+.+|...|++++|+|++++||+|+.||+|
T Consensus        37 ~~lAvg-~D~tV~iWd~~tg~------------------------~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v   91 (318)
T 4ggc_A           37 NVLAVA-LDNSVYLWSASSGD------------------------ILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEV   91 (318)
T ss_dssp             SEEEEE-ETTEEEEEETTTCC------------------------EEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEE
T ss_pred             CEEEEE-eCCEEEEEECCCCC------------------------EEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcE
Confidence            467666 69999999764322                        11223456788999999999999999999999999


Q ss_pred             EEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEE
Q 047260          532 VLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFC  611 (784)
Q Consensus       532 ~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sg  611 (784)
                      +|||+++++.+..+.+|...+.++.+  ++..|++++.++.+++|+..........+.+|...+.++.+.+++. +++++
T Consensus        92 ~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~  168 (318)
T 4ggc_A           92 QLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR-HLASG  168 (318)
T ss_dssp             EEEETTTTEEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEEEE
T ss_pred             EEeecCCceeEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCC-EEEEE
Confidence            99999999999999999999887766  4679999999999999999988777888899999999999999987 77889


Q ss_pred             eCCCeEEEEeCCCCee-------EEeecCCeeEEEEecCCCEEE---EEECCCcEEEEECCCCeEEEEEeCCCCCEEEEE
Q 047260          612 DNDNEIQYWSINPFLC-------THITKGGTAQVRFQPRIGQLL---AAASDKVVSIFDIETDRQTHSLQGHAELVNYIC  681 (784)
Q Consensus       612 s~dg~I~iwDl~~~~~-------~~~~~~~v~~v~fsp~~~~Ll---~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~  681 (784)
                      +.|+.|++||+++.+.       .....+.+..+.+.+.+..++   +++.++.|++||.+......... +...+..++
T Consensus       169 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~  247 (318)
T 4ggc_A          169 GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSIL  247 (318)
T ss_dssp             ETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEE
T ss_pred             ecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeee
Confidence            9999999999986432       233446788999999877554   33457999999999887776654 777899999


Q ss_pred             EcCCCCEEEEEe---CCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCc
Q 047260          682 WDTNGDYLASVS---QNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENK  748 (784)
Q Consensus       682 ~spdg~~Lasgs---dd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~  748 (784)
                      |++++..+++++   ++.|+|||+++++++.++.+|...|++++|+|++.+|++++.|++|+|||+.+..
T Consensus       248 ~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          248 WSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD  317 (318)
T ss_dssp             EETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred             ecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence            999999888765   4599999999999999999999999999999999999999999999999987653

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.98  E-value=1.3e-29  Score=282.95  Aligned_cols=283  Identities=10%  Similarity=0.110  Sum_probs=241.5

Q ss_pred             eEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceee-----ecCCCCCCeEEEEEccCCCEEEEEeCCCe
Q 047260          498 CEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTES-----TPEDHKSVVTDVRFRPNSSQLATASVDKS  572 (784)
Q Consensus       498 ~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~-----~l~~h~~~It~i~fspdg~~Latgs~Dg~  572 (784)
                      ..+..+..+. .+.+++|+|++.++++++.++.|++||+.+++...     .+.+|...|.+++|++++.++++++.|+.
T Consensus       114 ~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~  192 (433)
T 3bws_A          114 RFISRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANA  192 (433)
T ss_dssp             EEEEEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTE
T ss_pred             eEEEEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCE
Confidence            4455555544 46699999988888888889999999999998887     45588999999999999999999999999


Q ss_pred             EEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec--CCeeEEEEecCCCEEEEE
Q 047260          573 VRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK--GGTAQVRFQPRIGQLLAA  650 (784)
Q Consensus       573 I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~--~~v~~v~fsp~~~~Ll~~  650 (784)
                      |++||+++++ ....+..|...+.+++|+|++..++++++.++.|++||+++.+.+..+.  ..+.+++|+|++..++++
T Consensus       193 v~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~  271 (433)
T 3bws_A          193 VHVFDLKTLA-YKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIA  271 (433)
T ss_dssp             EEEEETTTCC-EEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEE
T ss_pred             EEEEECCCce-EEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEE
Confidence            9999999866 5566678889999999999999888888889999999999888776655  457889999999999998


Q ss_pred             E--------CCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEE-e-CCeEEEEeCCCCceEEEeccCCCceEE
Q 047260          651 A--------SDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASV-S-QNLVKVWSMASGECIQELSSNGNQFHS  720 (784)
Q Consensus       651 s--------~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasg-s-dd~I~IwDl~t~~~i~~l~~~~~~I~s  720 (784)
                      +        .|+.|++||+++++.+..+. |...+.+++|+|++++++++ + ++.|++||+.+++.+..+. +...+.+
T Consensus       272 ~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~  349 (433)
T 3bws_A          272 QFSASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNT  349 (433)
T ss_dssp             EEESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEE
T ss_pred             ECCCCccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCe
Confidence            8        48899999999998777663 55688999999999866544 4 4499999999999888875 5677999


Q ss_pred             EEEecCCCEEEEEEC---------------CCeEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEEC-CCcEEEeC
Q 047260          721 CVFHPSYSTLLVVGG---------------ISSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASH-DSSVKLWK  784 (784)
Q Consensus       721 l~fspdg~~L~s~s~---------------dg~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs~-DG~V~IWd  784 (784)
                      ++|+|+++++++++.               ||.|++||+.+++.+....+...+.+++|+|++++|++++. |+.|+||+
T Consensus       350 ~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~  429 (433)
T 3bws_A          350 IALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVISDFLDHQIRVYR  429 (433)
T ss_dssp             EEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEECTTSCEEEEEETTTTEEEEEE
T ss_pred             EEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCCCceEEEcCCCCEEEEEECCCCeEEEEE
Confidence            999999999988887               46999999999988866656678999999999999998875 99999996

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=3.2e-30  Score=282.76  Aligned_cols=274  Identities=14%  Similarity=0.182  Sum_probs=214.9

Q ss_pred             EeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEE-EEEeCCCeEEEEcC
Q 047260          500 VGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQL-ATASVDKSVRLWDA  578 (784)
Q Consensus       500 i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~L-atgs~Dg~I~IWdl  578 (784)
                      +..+.+|.+.|+|++|+|||++||+|+.++ ++|||+++++.......  ..+..++|.++++.+ ++++.|++|+|||+
T Consensus        12 ~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~   88 (355)
T 3vu4_A           12 IVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTGVKEVVHIWDD   88 (355)
T ss_dssp             -------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEECSSTTEEEEEET
T ss_pred             ccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEECCccEEEEEEC
Confidence            445678999999999999999999998775 78999998776655432  257888999888877 56778899999999


Q ss_pred             CCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC-eeEEeecCCeeEEEEecCCCEEEEE--ECCCc
Q 047260          579 ANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPF-LCTHITKGGTAQVRFQPRIGQLLAA--ASDKV  655 (784)
Q Consensus       579 ~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~-~~~~~~~~~v~~v~fsp~~~~Ll~~--s~Dg~  655 (784)
                      .+++ ....+. +...|.++.|+++.   ++++. ++.|++||+.+. +.+..+......+++++  ..++++  +.||.
T Consensus        89 ~~~~-~~~~~~-~~~~v~~v~~~~~~---~~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~--~~la~~sg~~~g~  160 (355)
T 3vu4_A           89 VKKQ-DVSRIK-VDAPVKDLFLSREF---IVVSY-GDVISVFKFGNPWKRITDDIRFGGVCEFSN--GLLVYSNEFNLGQ  160 (355)
T ss_dssp             TTTE-EEEEEE-CSSCEEEEEECSSE---EEEEE-TTEEEEEESSTTCCBSSCCEEEEEEEEEET--TEEEEEESSCTTC
T ss_pred             CCCc-EEEEEE-CCCceEEEEEcCCE---EEEEE-cCEEEEEECCCCceeeEEeccCCceEEEEc--cEEEEeCCCcCcE
Confidence            9876 444444 66799999998763   33333 889999999876 55544444445566777  566664  56999


Q ss_pred             EEEEECCCCe---------------E-EEEEeCCCCCEEEEEEcCCCCEEEEEeCC-e-EEEEeCCCCceEEEec-c-CC
Q 047260          656 VSIFDIETDR---------------Q-THSLQGHAELVNYICWDTNGDYLASVSQN-L-VKVWSMASGECIQELS-S-NG  715 (784)
Q Consensus       656 I~IwDl~t~~---------------~-i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~-I~IwDl~t~~~i~~l~-~-~~  715 (784)
                      |++||+++++               + +..+.+|...|++++|+|+|.+|++++.| + |+|||+++++++.++. + |.
T Consensus       161 v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~  240 (355)
T 3vu4_A          161 IHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDR  240 (355)
T ss_dssp             EEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCC
T ss_pred             EEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCC
Confidence            9999999865               2 67889999999999999999999999966 7 9999999999999998 5 89


Q ss_pred             CceEEEEEecCCCEEEEEECCCeEEEEECCCCceE---Ee--------------------c-ccCCceEEEEEeCCCCEE
Q 047260          716 NQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM---TI--------------------A-AHENIISALAQSPVTGMV  771 (784)
Q Consensus       716 ~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~---~~--------------------~-~h~~~V~slafspdg~~L  771 (784)
                      ..|.+++|+|++.+|++++.|++|+|||+......   .+                    . .+......++|++++++|
T Consensus       241 ~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l  320 (355)
T 3vu4_A          241 ADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLV  320 (355)
T ss_dssp             SCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEE
T ss_pred             CcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEE
Confidence            99999999999999999999999999999765321   10                    0 112234679999999999


Q ss_pred             EEEECCCcEEEeC
Q 047260          772 ASASHDSSVKLWK  784 (784)
Q Consensus       772 aSgs~DG~V~IWd  784 (784)
                      ++++.||.+++|+
T Consensus       321 ~~~~~dg~~~~~~  333 (355)
T 3vu4_A          321 VVWPHTRMIETFK  333 (355)
T ss_dssp             EEETTTTEEEEEE
T ss_pred             EEEeCCCeEEEEE
Confidence            9999999999985

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.97  E-value=8.4e-30  Score=286.47  Aligned_cols=276  Identities=19%  Similarity=0.370  Sum_probs=222.6

Q ss_pred             CceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCCCEEEEEeCCCe
Q 047260          451 DRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRK  530 (784)
Q Consensus       451 ~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~  530 (784)
                      ..++.+|+.|+.+++|+....                          ..+..+.+|.+.|++++|  ++++|++|+.||.
T Consensus       143 ~~~l~~g~~dg~i~iwd~~~~--------------------------~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~  194 (435)
T 1p22_A          143 DQKIVSGLRDNTIKIWDKNTL--------------------------ECKRILTGHTGSVLCLQY--DERVIITGSSDST  194 (435)
T ss_dssp             SSEEEEEESSSCEEEEESSSC--------------------------CEEEEECCCSSCEEEEEC--CSSEEEEEETTSC
T ss_pred             CCEEEEEeCCCeEEEEeCCCC--------------------------eEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCe
Confidence            456668999999999976322                          245667889999999999  7889999999999


Q ss_pred             EEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcce--eeeccCCCCCeEEEEEcCCCCcEE
Q 047260          531 VVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFC--SQAYTGHSSPIMSLDFHPKKTDLF  608 (784)
Q Consensus       531 I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~--~~~~~~h~~~V~sl~~sp~~~~ll  608 (784)
                      |+|||+.+++.+..+..|...|.+++|+  +.+|++|+.||.|++||+.++...  ...+.+|...|.+++|.  + .++
T Consensus       195 i~vwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~l  269 (435)
T 1p22_A          195 VRVWDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--D-KYI  269 (435)
T ss_dssp             EEEEESSSCCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--T-TEE
T ss_pred             EEEEECCCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeC--C-CEE
Confidence            9999999999999999999999999997  459999999999999999876633  26677899999999993  3 388


Q ss_pred             EEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCC
Q 047260          609 CFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTN  685 (784)
Q Consensus       609 ~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spd  685 (784)
                      ++++.||.|++||+++...+..+.   ..+.++.+  ++..+++++.||.|++||+++++.+..+.+|...|.+++|  +
T Consensus       270 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~  345 (435)
T 1p22_A          270 VSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--D  345 (435)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--C
T ss_pred             EEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--c
Confidence            899999999999999887776654   56777777  4689999999999999999999999999999999999999  7


Q ss_pred             CCEEEEEeCC-eEEEEeCCCCc---------eEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceEEeccc
Q 047260          686 GDYLASVSQN-LVKVWSMASGE---------CIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIAAH  755 (784)
Q Consensus       686 g~~Lasgsdd-~I~IwDl~t~~---------~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~~~h  755 (784)
                      +.+|++++.+ .|++||+.++.         ++..+..|...|.+++|  ++.+|++++.||.|++||+.+.........
T Consensus       346 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~  423 (435)
T 1p22_A          346 NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQAEPP  423 (435)
T ss_dssp             SSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC------------
T ss_pred             CCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCcccCCC
Confidence            8899998855 99999997765         88999999999999999  677899999999999999988776644444


Q ss_pred             CCceEEEEEe
Q 047260          756 ENIISALAQS  765 (784)
Q Consensus       756 ~~~V~slafs  765 (784)
                      ..++.++.|.
T Consensus       424 ~~~~~~~~~~  433 (435)
T 1p22_A          424 RSPSRTYTYI  433 (435)
T ss_dssp             ----------
T ss_pred             CCCccceeee
Confidence            4555555554

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.7e-29  Score=283.75  Aligned_cols=270  Identities=14%  Similarity=0.135  Sum_probs=222.4

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc---eeeecC--------------------------------------
Q 047260          508 SKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQ---TESTPE--------------------------------------  546 (784)
Q Consensus       508 ~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~---~~~~l~--------------------------------------  546 (784)
                      .+|.|++|++||++|+++ .++.|++||+.+++   .+..+.                                      
T Consensus         5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS   83 (450)
T ss_dssp             CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred             ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence            468999999999976655 57899999999888   554443                                      


Q ss_pred             ----------------CCCCCeEEEEEccCCCEE-EEEeCCCeEEEEcCC--CCcceeeecc--CCCCCeEEEEEcCCCC
Q 047260          547 ----------------DHKSVVTDVRFRPNSSQL-ATASVDKSVRLWDAA--NPNFCSQAYT--GHSSPIMSLDFHPKKT  605 (784)
Q Consensus       547 ----------------~h~~~It~i~fspdg~~L-atgs~Dg~I~IWdl~--~~~~~~~~~~--~h~~~V~sl~~sp~~~  605 (784)
                                      .|...|++++|+|++++| ++++.||.|+|||+.  ++. ....+.  .|...|.+++|+|++.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~v~~~~~sp~~~  162 (450)
T 2vdu_B           84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKN-VLKLRKRFCFSKRPNAISIAEDDT  162 (450)
T ss_dssp             ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSS-CEEEEEEEECSSCEEEEEECTTSS
T ss_pred             ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCc-eeeeeecccCCCCceEEEEcCCCC
Confidence                            234479999999999996 889999999999998  655 444444  6778999999999987


Q ss_pred             cEEEEEeCCCeEEEEeCCCCee-------EEeecCCeeEEEEecC---CCEEEEEECCCcEEEEECCCCeEEEE-EeCCC
Q 047260          606 DLFCFCDNDNEIQYWSINPFLC-------THITKGGTAQVRFQPR---IGQLLAAASDKVVSIFDIETDRQTHS-LQGHA  674 (784)
Q Consensus       606 ~ll~sgs~dg~I~iwDl~~~~~-------~~~~~~~v~~v~fsp~---~~~Ll~~s~Dg~I~IwDl~t~~~i~~-l~~h~  674 (784)
                       +|++++.+|.|++|++.....       +..+...+.+++|+|+   +.+|++++.|+.|++||+++++.+.. +.+|.
T Consensus       163 -~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~  241 (450)
T 2vdu_B          163 -TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHK  241 (450)
T ss_dssp             -EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCS
T ss_pred             -EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCC
Confidence             777888899999999976543       3445688999999999   88999999999999999999988877 55899


Q ss_pred             CCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEecc-------------------------CCCceEEEEEecCCC
Q 047260          675 ELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSS-------------------------NGNQFHSCVFHPSYS  728 (784)
Q Consensus       675 ~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~-------------------------~~~~I~sl~fspdg~  728 (784)
                      ..|.+++|+ ++.+|++++.+ .|+|||+.+++++..+..                         ....|.+++|+|+++
T Consensus       242 ~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~  320 (450)
T 2vdu_B          242 HFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLP  320 (450)
T ss_dssp             SCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSS
T ss_pred             CceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCC
Confidence            999999999 99999999966 999999999998888762                         235689999999999


Q ss_pred             EEEEEE-CCCeEEEEEC--CCC---ceE-EecccCCceEEEEEeCCCCEEEEEEC-------CCcEEEe
Q 047260          729 TLLVVG-GISSLELWNM--AEN---KSM-TIAAHENIISALAQSPVTGMVASASH-------DSSVKLW  783 (784)
Q Consensus       729 ~L~s~s-~dg~I~Iwdl--~~~---~~~-~~~~h~~~V~slafspdg~~LaSgs~-------DG~V~IW  783 (784)
                      +|++++ .++.|+||++  ..+   ..+ .+..| +.|.+++|+|++ ++++++.       +..|.||
T Consensus       321 ~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~-~~v~~~~~~~~~~~~~~i~v~  387 (450)
T 2vdu_B          321 FVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDE-FQVTLDNKESSGVQKNFAKFI  387 (450)
T ss_dssp             EEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTE-EEEEECCTTCCSSCCCSEEEE
T ss_pred             EEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCc-EEEEEecccCCCCCCcceEEE
Confidence            999999 8899999999  554   333 45556 889999999954 5555433       4557777

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.97  E-value=7.9e-30  Score=285.35  Aligned_cols=288  Identities=13%  Similarity=0.233  Sum_probs=227.3

Q ss_pred             CcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCC-----------
Q 047260          439 SLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRN-----------  507 (784)
Q Consensus       439 ~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~-----------  507 (784)
                      ..++++.+.++.. ++++|+.|+.|++|+.......               .......+..+..+.+|.           
T Consensus        29 ~~V~~v~~s~~g~-~la~g~~dg~v~iw~~~~~~~~---------------~~~~~~~~~~~~~~~~h~~~~~~~~~~~~   92 (447)
T 3dw8_B           29 DIISTVEFNHSGE-LLATGDKGGRVVIFQQEQENKI---------------QSHSRGEYNVYSTFQSHEPEFDYLKSLEI   92 (447)
T ss_dssp             GSEEEEEECSSSS-EEEEEETTSEEEEEEECC--------------------CCCCCCEEEEEEEECCCCEEEGGGTEEE
T ss_pred             CcEEEEEECCCCC-EEEEEcCCCeEEEEEecCCCCC---------------CcccccceeEecccccccccccccccccc
Confidence            4456666766554 4557999999999988543310               011223456678888998           


Q ss_pred             -CceEEEEEcCCC--CEEEEEeCCCeEEEEECCCCcee----------------------------------------ee
Q 047260          508 -SKVTCCHFSSDG--KLLASSGHDRKVVLWNMDTLQTE----------------------------------------ST  544 (784)
Q Consensus       508 -~~V~~l~fspdg--~~Lasgs~Dg~I~IWd~~t~~~~----------------------------------------~~  544 (784)
                       +.|++++|+|++  .+|++++.|+.|+|||+.++...                                        ..
T Consensus        93 ~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (447)
T 3dw8_B           93 EEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIF  172 (447)
T ss_dssp             CCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEE
T ss_pred             cCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEe
Confidence             889999999998  79999999999999998764332                                        11


Q ss_pred             cCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceee-------eccCCCCCeEEEEEcCCCCcEEEEEeCCCeE
Q 047260          545 PEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQ-------AYTGHSSPIMSLDFHPKKTDLFCFCDNDNEI  617 (784)
Q Consensus       545 l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~-------~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I  617 (784)
                      ..+|...|++++|+|++++|++| .|+.|+|||++.......       .+.+|...|.+++|+|++..+|++++.||.|
T Consensus       173 ~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i  251 (447)
T 3dw8_B          173 ANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTI  251 (447)
T ss_dssp             CSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCE
T ss_pred             ccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeE
Confidence            36899999999999999999998 799999999985443333       3668999999999999986699999999999


Q ss_pred             EEEeCCCCee----EEeec---C------------CeeEEEEecCCCEEEEEECCCcEEEEECCC-CeEEEEEeCCCCC-
Q 047260          618 QYWSINPFLC----THITK---G------------GTAQVRFQPRIGQLLAAASDKVVSIFDIET-DRQTHSLQGHAEL-  676 (784)
Q Consensus       618 ~iwDl~~~~~----~~~~~---~------------~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t-~~~i~~l~~h~~~-  676 (784)
                      ++||+++...    ...+.   .            .+.+++|+|++.+|++++. +.|++||+++ ++++..+.+|... 
T Consensus       252 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~  330 (447)
T 3dw8_B          252 RLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLR  330 (447)
T ss_dssp             EEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGT
T ss_pred             EEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccc
Confidence            9999987664    33333   2            7899999999999999999 9999999997 8888888887542 


Q ss_pred             --------------EEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEec-----------------------------
Q 047260          677 --------------VNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELS-----------------------------  712 (784)
Q Consensus       677 --------------V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~-----------------------------  712 (784)
                                    +..++|+|++.+|++++.+ .|+|||+.+++.+....                             
T Consensus       331 ~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (447)
T 3dw8_B          331 SKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISV  410 (447)
T ss_dssp             TTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEG
T ss_pred             ccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccc
Confidence                          3349999999999999865 99999999987763211                             


Q ss_pred             ---cCCCceEEEEEecCCCEEEEEECCCeEEEEECC
Q 047260          713 ---SNGNQFHSCVFHPSYSTLLVVGGISSLELWNMA  745 (784)
Q Consensus       713 ---~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~  745 (784)
                         .....|..++|+|++.+|++++.++ +++|..+
T Consensus       411 ~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~  445 (447)
T 3dw8_B          411 DSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK  445 (447)
T ss_dssp             GGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred             cccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence               1234688999999999998887775 8888654

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.3e-30  Score=283.68  Aligned_cols=261  Identities=10%  Similarity=0.068  Sum_probs=213.2

Q ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCC---------CCcce
Q 047260          514 HFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAA---------NPNFC  584 (784)
Q Consensus       514 ~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~---------~~~~~  584 (784)
                      .+.+++.+|++|+.||.|+|||+.+++.+..+.  ...|.++.|+|+   +++++.|++|++|+..         +....
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~  117 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVL  117 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEE
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCccee
Confidence            344678899999999999999999998888775  567888899988   9999999999999766         33323


Q ss_pred             eeeccCCCCCeEEEEEcC--CCCcEEEEEeCCCeEEEEeCCCCeeEEee----cCCeeEEEEecCCCEEEEEECCCcEEE
Q 047260          585 SQAYTGHSSPIMSLDFHP--KKTDLFCFCDNDNEIQYWSINPFLCTHIT----KGGTAQVRFQPRIGQLLAAASDKVVSI  658 (784)
Q Consensus       585 ~~~~~~h~~~V~sl~~sp--~~~~ll~sgs~dg~I~iwDl~~~~~~~~~----~~~v~~v~fsp~~~~Ll~~s~Dg~I~I  658 (784)
                      .....+|...|.+++|+|  ++. ++++++.||.|++||+++.++....    ...+.+++|+|++.+|++|+.||.|++
T Consensus       118 ~~~~~~~~~~v~~~~~~~~~~~~-~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~i  196 (343)
T 3lrv_A          118 REIEVDSANEIIYMYGHNEVNTE-YFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDV  196 (343)
T ss_dssp             EEEECCCSSCEEEEECCC---CC-EEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEE
T ss_pred             EEeecCCCCCEEEEEcCCCCCCC-EEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEE
Confidence            333447778999999999  776 7888999999999999988876544    246899999999999999999999999


Q ss_pred             EECCCCeEE-EEEeC-CCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEEEecc---CCCceE--EEEEecCCCEEE
Q 047260          659 FDIETDRQT-HSLQG-HAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELSS---NGNQFH--SCVFHPSYSTLL  731 (784)
Q Consensus       659 wDl~t~~~i-~~l~~-h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~~l~~---~~~~I~--sl~fspdg~~L~  731 (784)
                      ||+++++.+ ..+.. |...|++++|+|++.+|++++++.|+|||+++++++..+..   +...+.  +++|+|++++|+
T Consensus       197 wd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~  276 (343)
T 3lrv_A          197 YNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMI  276 (343)
T ss_dssp             EESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEE
T ss_pred             EECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEE
Confidence            999999877 78888 99999999999999999999988999999999877655443   333343  699999999999


Q ss_pred             EEEC-CCeEEEEECCCCceEEecccCCceEEEEEeC---CCCEEEEEECCCcEEEe
Q 047260          732 VVGG-ISSLELWNMAENKSMTIAAHENIISALAQSP---VTGMVASASHDSSVKLW  783 (784)
Q Consensus       732 s~s~-dg~I~Iwdl~~~~~~~~~~h~~~V~slafsp---dg~~LaSgs~DG~V~IW  783 (784)
                      +++. |+.|+||++.........   ..+..++|.+   +...|++++.||.+.++
T Consensus       277 ~~s~~d~~i~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~  329 (343)
T 3lrv_A          277 AYSNESNSLTIYKFDKKTKNWTK---DEESALCLQSDTADFTDMDVVCGDGGIAAI  329 (343)
T ss_dssp             EEETTTTEEEEEEECTTTCSEEE---EEEEECCC----CCCCEEEEEEETTEEEEE
T ss_pred             EecCCCCcEEEEEEcccccceEe---cCceeEecCccccccceeEEEecCCceEEE
Confidence            9998 999999999765433111   5677888888   77888888889888775

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.97  E-value=1.2e-29  Score=285.16  Aligned_cols=242  Identities=19%  Similarity=0.348  Sum_probs=209.0

Q ss_pred             eecCCCCCCeEEEEEccC-CCEEEEEeCCCeEEEEcCCCC---------cceeeeccCCCCCeEEEEEcCCCCcEEEEEe
Q 047260          543 STPEDHKSVVTDVRFRPN-SSQLATASVDKSVRLWDAANP---------NFCSQAYTGHSSPIMSLDFHPKKTDLFCFCD  612 (784)
Q Consensus       543 ~~l~~h~~~It~i~fspd-g~~Latgs~Dg~I~IWdl~~~---------~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs  612 (784)
                      .....|.+.|++++|+|+ +.+|++++.||.|+|||+...         ......+.+|...|.+++|+|++..+|++|+
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  201 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS  201 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence            334579999999999997 789999999999999999762         2355667799999999999999888999999


Q ss_pred             CCCeEEEEeCCCC----------eeEEeecCCeeEEEEec-CCCEEEEEECCCcEEEEECCCC---eEEEEEeCCCCCEE
Q 047260          613 NDNEIQYWSINPF----------LCTHITKGGTAQVRFQP-RIGQLLAAASDKVVSIFDIETD---RQTHSLQGHAELVN  678 (784)
Q Consensus       613 ~dg~I~iwDl~~~----------~~~~~~~~~v~~v~fsp-~~~~Ll~~s~Dg~I~IwDl~t~---~~i~~l~~h~~~V~  678 (784)
                      .||.|++||++..          .....+...+.+++|+| ++..|++++.|+.|++||++++   +.+..+..|...|+
T Consensus       202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~  281 (430)
T 2xyi_A          202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN  281 (430)
T ss_dssp             TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred             CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence            9999999999862          22234557799999999 6678888999999999999987   57778888999999


Q ss_pred             EEEEcCCCC-EEEEEeCC-eEEEEeCCC-CceEEEeccCCCceEEEEEecCCC-EEEEEECCCeEEEEECCCC-------
Q 047260          679 YICWDTNGD-YLASVSQN-LVKVWSMAS-GECIQELSSNGNQFHSCVFHPSYS-TLLVVGGISSLELWNMAEN-------  747 (784)
Q Consensus       679 sl~~spdg~-~Lasgsdd-~I~IwDl~t-~~~i~~l~~~~~~I~sl~fspdg~-~L~s~s~dg~I~Iwdl~~~-------  747 (784)
                      +++|+|++. +|++++.+ .|+|||+++ ..++..+..|...|.+++|+|+++ +|++++.|+.|+|||+...       
T Consensus       282 ~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  361 (430)
T 2xyi_A          282 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE  361 (430)
T ss_dssp             EEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHH
T ss_pred             EEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCcc
Confidence            999999987 67787755 999999998 567889999999999999999995 5889999999999999872       


Q ss_pred             -------ceE-EecccCCceEEEEEeCCCC-EEEEEECCCcEEEeC
Q 047260          748 -------KSM-TIAAHENIISALAQSPVTG-MVASASHDSSVKLWK  784 (784)
Q Consensus       748 -------~~~-~~~~h~~~V~slafspdg~-~LaSgs~DG~V~IWd  784 (784)
                             ..+ ...+|...|++++|+|++. +|++++.||.|+||+
T Consensus       362 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~  407 (430)
T 2xyi_A          362 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ  407 (430)
T ss_dssp             HHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred             ccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeE
Confidence                   333 5668999999999999999 999999999999996

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1e-30  Score=292.84  Aligned_cols=261  Identities=17%  Similarity=0.248  Sum_probs=216.2

Q ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCceeeec-CCCCCCeEEEEEcc-CCCEEEEEeCCCeEEEEcCCC---Cccee-eec
Q 047260          515 FSSDGKLLASSGHDRKVVLWNMDTLQTESTP-EDHKSVVTDVRFRP-NSSQLATASVDKSVRLWDAAN---PNFCS-QAY  588 (784)
Q Consensus       515 fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l-~~h~~~It~i~fsp-dg~~Latgs~Dg~I~IWdl~~---~~~~~-~~~  588 (784)
                      |+|++..+++++      +|+. +++.+..+ .+|.+.|++++|+| ++++|++|+.||+|+|||+.+   +.... ...
T Consensus        35 f~~~~~~~~~~~------~w~~-~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~  107 (437)
T 3gre_A           35 FGPIQEIVRSPN------MGNL-RGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLT  107 (437)
T ss_dssp             GCCCCCCCCCCC------GGGC-CCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEE
T ss_pred             cCCccccccccc------cccc-cceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeee
Confidence            677887777654      3874 46778888 88999999999999 999999999999999999876   32111 122


Q ss_pred             cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCC---CCeeEEe---------------ecCCeeEEE--EecCCCEEE
Q 047260          589 TGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSIN---PFLCTHI---------------TKGGTAQVR--FQPRIGQLL  648 (784)
Q Consensus       589 ~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~---~~~~~~~---------------~~~~v~~v~--fsp~~~~Ll  648 (784)
                      .+|...|.+++|+|++. +|++++.||.|++||++   .......               ....+.++.  +++++..|+
T Consensus       108 ~~h~~~v~~~~~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  186 (437)
T 3gre_A          108 YDCSSTVTQITMIPNFD-AFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLV  186 (437)
T ss_dssp             EECSSCEEEEEECTTSS-EEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEE
T ss_pred             ccCCCCEEEEEEeCCCC-EEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEE
Confidence            25899999999999876 78899999999999994   3322221               123445555  557889999


Q ss_pred             EEECCCcEEEEECCCCeEEEEEeC--CCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEec-cCCCceEEEEEe
Q 047260          649 AAASDKVVSIFDIETDRQTHSLQG--HAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELS-SNGNQFHSCVFH  724 (784)
Q Consensus       649 ~~s~Dg~I~IwDl~t~~~i~~l~~--h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~-~~~~~I~sl~fs  724 (784)
                      +++.|+.|++||+++++.+..+..  |...|++++|+|++.+|++++.+ .|++||+++++++.++. .|...|.+++|+
T Consensus       187 ~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~  266 (437)
T 3gre_A          187 ALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVC  266 (437)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEEC
T ss_pred             EEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEec
Confidence            999999999999999999999988  88999999999999999999966 99999999999999886 777899999666


Q ss_pred             c----CCCEEEEEECCCeEEEEECCCCceE-Eecc--------------------------cCCceEEEEEeCCCCEEEE
Q 047260          725 P----SYSTLLVVGGISSLELWNMAENKSM-TIAA--------------------------HENIISALAQSPVTGMVAS  773 (784)
Q Consensus       725 p----dg~~L~s~s~dg~I~Iwdl~~~~~~-~~~~--------------------------h~~~V~slafspdg~~LaS  773 (784)
                      |    ++.+|++++.|+.|++||+.+++++ .+..                          |...|++++|+ ++++|++
T Consensus       267 ~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s  345 (437)
T 3gre_A          267 QFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLT  345 (437)
T ss_dssp             TTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEE
T ss_pred             cccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEe
Confidence            5    5779999999999999999988765 2221                          66779999999 7789999


Q ss_pred             EECCCcEEEeC
Q 047260          774 ASHDSSVKLWK  784 (784)
Q Consensus       774 gs~DG~V~IWd  784 (784)
                      |+.||.|++||
T Consensus       346 ~~~d~~i~~wd  356 (437)
T 3gre_A          346 DEATSSIVMFS  356 (437)
T ss_dssp             EGGGTEEEEEE
T ss_pred             cCCCCeEEEEE
Confidence            99999999997

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.97  E-value=4.5e-30  Score=285.13  Aligned_cols=277  Identities=16%  Similarity=0.194  Sum_probs=225.7

Q ss_pred             cCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcC-CCCEEEEEe
Q 047260          448 EDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSS-DGKLLASSG  526 (784)
Q Consensus       448 ~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fsp-dg~~Lasgs  526 (784)
                      ++...++.+++.|+.+.+|+....+  +.                    ...+..+.+|.+.|++++|+| ++++|++|+
T Consensus        44 ~~~~~~~~~~~~~g~i~v~~~~~~~--~~--------------------~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s  101 (402)
T 2aq5_A           44 PKFMALICEASGGGAFLVLPLGKTG--RV--------------------DKNVPLVCGHTAPVLDIAWCPHNDNVIASGS  101 (402)
T ss_dssp             SSEEEEEBCCSSSCCEEEEETTCCE--EC--------------------CTTCCCBCCCSSCEEEEEECTTCTTEEEEEE
T ss_pred             CCeEEEEEEEcCCCEEEEEECccCC--CC--------------------CCCCceEecCCCCEEEEEeCCCCCCEEEEEe
Confidence            4444555568899999999763321  00                    012344678999999999999 999999999


Q ss_pred             CCCeEEEEECCCC-------ceeeecCCCCCCeEEEEEccCC-CEEEEEeCCCeEEEEcCCCCcceeeec--cCCCCCeE
Q 047260          527 HDRKVVLWNMDTL-------QTESTPEDHKSVVTDVRFRPNS-SQLATASVDKSVRLWDAANPNFCSQAY--TGHSSPIM  596 (784)
Q Consensus       527 ~Dg~I~IWd~~t~-------~~~~~l~~h~~~It~i~fspdg-~~Latgs~Dg~I~IWdl~~~~~~~~~~--~~h~~~V~  596 (784)
                      .||.|+|||+.++       +.+..+.+|...|++++|+|++ .+|++++.|+.|+|||+++++ ....+  .+|...|.
T Consensus       102 ~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~  180 (402)
T 2aq5_A          102 EDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA-AVLTLGPDVHPDTIY  180 (402)
T ss_dssp             TTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTE-EEEEECTTTCCSCEE
T ss_pred             CCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC-ccEEEecCCCCCceE
Confidence            9999999999987       5677888999999999999998 699999999999999999876 55556  78999999


Q ss_pred             EEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEee-c---C-CeeEEEEecCCCEEEEE---ECCCcEEEEECCCCeE-E
Q 047260          597 SLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHIT-K---G-GTAQVRFQPRIGQLLAA---ASDKVVSIFDIETDRQ-T  667 (784)
Q Consensus       597 sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~-~---~-~v~~v~fsp~~~~Ll~~---s~Dg~I~IwDl~t~~~-i  667 (784)
                      +++|+|++. +|++++.|+.|++||+++...+..+ .   + .+.++.|+|++.+|+++   +.|+.|++||+++.+. +
T Consensus       181 ~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~  259 (402)
T 2aq5_A          181 SVDWSRDGA-LICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPL  259 (402)
T ss_dssp             EEEECTTSS-CEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCS
T ss_pred             EEEECCCCC-EEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCc
Confidence            999999887 6778889999999999998877665 2   2 37899999998888888   5799999999998654 3


Q ss_pred             EEEe-CCCCCEEEEEEcCCCCEEEEEe--CCeEEEEeCCCCce-EEEecc--CCCceEEEEEecCCCEEEEEECCCeEEE
Q 047260          668 HSLQ-GHAELVNYICWDTNGDYLASVS--QNLVKVWSMASGEC-IQELSS--NGNQFHSCVFHPSYSTLLVVGGISSLEL  741 (784)
Q Consensus       668 ~~l~-~h~~~V~sl~~spdg~~Lasgs--dd~I~IwDl~t~~~-i~~l~~--~~~~I~sl~fspdg~~L~s~s~dg~I~I  741 (784)
                      .... .|...|.+++|+|++.+|++++  ++.|++||+.+++. +..+..  +...|.+++|+|++.++++  .++.+++
T Consensus       260 ~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~  337 (402)
T 2aq5_A          260 SLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARF  337 (402)
T ss_dssp             EEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEE
T ss_pred             eEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEE
Confidence            3333 4778899999999999987544  55999999999874 444443  4588999999999987654  5679999


Q ss_pred             EECCCCceE
Q 047260          742 WNMAENKSM  750 (784)
Q Consensus       742 wdl~~~~~~  750 (784)
                      |++.++.+.
T Consensus       338 ~~l~~~~~~  346 (402)
T 2aq5_A          338 YKLHERKCE  346 (402)
T ss_dssp             EEEETTEEE
T ss_pred             EEcCCCcEE
Confidence            999887654

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.97  E-value=3.9e-29  Score=269.03  Aligned_cols=275  Identities=11%  Similarity=0.119  Sum_probs=230.5

Q ss_pred             CCCCcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEE
Q 047260          436 GTGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHF  515 (784)
Q Consensus       436 ~~~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~f  515 (784)
                      ++...+.+..+.++...+ .+++.|+.+++|+.....                       ....+..+.+|...|++++|
T Consensus         9 ~h~~~v~~~~~s~~~~~l-~~~~~d~~v~iw~~~~~~-----------------------~~~~~~~~~~~~~~v~~~~~   64 (342)
T 1yfq_A            9 APKDYISDIKIIPSKSLL-LITSWDGSLTVYKFDIQA-----------------------KNVDLLQSLRYKHPLLCCNF   64 (342)
T ss_dssp             CCSSCEEEEEEEGGGTEE-EEEETTSEEEEEEEETTT-----------------------TEEEEEEEEECSSCEEEEEE
T ss_pred             CCCCcEEEEEEcCCCCEE-EEEcCCCeEEEEEeCCCC-----------------------ccccceeeeecCCceEEEEE
Confidence            344556667776765544 568899999999875432                       01223445689999999999


Q ss_pred             cCCCC-EEEEEeCCCeEEEEEC-CCCceeeecCC--CCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCC---------Cc
Q 047260          516 SSDGK-LLASSGHDRKVVLWNM-DTLQTESTPED--HKSVVTDVRFRPNSSQLATASVDKSVRLWDAAN---------PN  582 (784)
Q Consensus       516 spdg~-~Lasgs~Dg~I~IWd~-~t~~~~~~l~~--h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~---------~~  582 (784)
                      +|+++ +|++|+.||.|++||+ .+++. ..+..  |...|++++|+| +.+|++++.|+.|++||+++         .+
T Consensus        65 ~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  142 (342)
T 1yfq_A           65 IDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNL  142 (342)
T ss_dssp             EESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEES
T ss_pred             CCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCC
Confidence            99999 9999999999999999 87655 67778  999999999999 99999999999999999986         44


Q ss_pred             ceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCC-Cee-----EEeecCCeeEEEEec-CCCEEEEEECCCc
Q 047260          583 FCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINP-FLC-----THITKGGTAQVRFQP-RIGQLLAAASDKV  655 (784)
Q Consensus       583 ~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~-~~~-----~~~~~~~v~~v~fsp-~~~~Ll~~s~Dg~  655 (784)
                       +...+. |...|.+++|++++   +++++.|+.|++||++. ...     ...+...+.+++|+| ++..+++++.||.
T Consensus       143 -~~~~~~-~~~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~  217 (342)
T 1yfq_A          143 -NSNNTK-VKNKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGR  217 (342)
T ss_dssp             -CSSSSS-SCCCEEEEEECSSE---EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSE
T ss_pred             -eeeEEe-eCCceEEEEecCCc---EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCc
Confidence             334444 88999999999876   88889999999999987 332     123456899999999 9999999999999


Q ss_pred             EEEEECCCC------eEEEEEeCCCC---------CEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccC-CCce
Q 047260          656 VSIFDIETD------RQTHSLQGHAE---------LVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSN-GNQF  718 (784)
Q Consensus       656 I~IwDl~t~------~~i~~l~~h~~---------~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~-~~~I  718 (784)
                      |++||++..      +....+..|..         .|.+++|+|++++|++++.+ .|++||+.+++++..+..| ...|
T Consensus       218 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v  297 (342)
T 1yfq_A          218 VAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSV  297 (342)
T ss_dssp             EEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEE
T ss_pred             EEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCc
Confidence            999999887      77888888765         99999999999999999865 9999999999999999998 9999


Q ss_pred             EEEEEecCCCEEEEEECCCe-EEEEE
Q 047260          719 HSCVFHPSYSTLLVVGGISS-LELWN  743 (784)
Q Consensus       719 ~sl~fspdg~~L~s~s~dg~-I~Iwd  743 (784)
                      .+++  |++.+|++++.||. .+.|.
T Consensus       298 ~~~~--~~~~~l~s~s~Dg~~~~~~~  321 (342)
T 1yfq_A          298 VKIA--CSDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             EEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred             eEec--CCCCeEEEEecCCccccccc
Confidence            9999  99999999999998 55544

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=6e-31  Score=303.96  Aligned_cols=253  Identities=11%  Similarity=0.030  Sum_probs=199.7

Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCcee----eecCCCCCCeEEEEEccC------CCEEEEEeCCCeEEEEcCCCCcc---
Q 047260          517 SDGKLLASSGHDRKVVLWNMDTLQTE----STPEDHKSVVTDVRFRPN------SSQLATASVDKSVRLWDAANPNF---  583 (784)
Q Consensus       517 pdg~~Lasgs~Dg~I~IWd~~t~~~~----~~l~~h~~~It~i~fspd------g~~Latgs~Dg~I~IWdl~~~~~---  583 (784)
                      |++..|++++.|++|+|||+.+++..    ..+..|.+.|.+|+|+|+      +.+||+++.||+|+|||+.++..   
T Consensus       171 ~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~  250 (524)
T 2j04_B          171 EHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVH  250 (524)
T ss_dssp             -----------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSS
T ss_pred             hhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccc
Confidence            33344555668899999999876642    345678899999999996      57999999999999999986542   


Q ss_pred             -------eeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe----eEEeecCCeeEE--EEecCC-CEEEE
Q 047260          584 -------CSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFL----CTHITKGGTAQV--RFQPRI-GQLLA  649 (784)
Q Consensus       584 -------~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~----~~~~~~~~v~~v--~fsp~~-~~Ll~  649 (784)
                             ....+.+|...|++++|++++  .|++|+.||.|++||+++..    ....+...|.+|  .|++++ ..|++
T Consensus       251 ~~~~~~~p~~~l~~h~~~v~sv~~s~~~--~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS  328 (524)
T 2j04_B          251 VFKMCEKPSLTLSLADSLITTFDFLSPT--TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVST  328 (524)
T ss_dssp             EEECCCSCSEEECCTTTCEEEEEESSSS--EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEE
T ss_pred             cceeecCceEEEEcCCCCEEEEEecCCC--eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEE
Confidence                   123567899999999999864  79999999999999998542    244566889998  567887 78999


Q ss_pred             EECCCcEEEEECCCCeEEEEEeCCCC--CEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecC
Q 047260          650 AASDKVVSIFDIETDRQTHSLQGHAE--LVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPS  726 (784)
Q Consensus       650 ~s~Dg~I~IwDl~t~~~i~~l~~h~~--~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspd  726 (784)
                      ++.|++|+|||+++++++..+.+|..  .|.+++|+|++..|++++++ +|+|||++++.++.++.+|...|.+++|+|+
T Consensus       329 ~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~  408 (524)
T 2j04_B          329 VAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRL  408 (524)
T ss_dssp             EETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSS
T ss_pred             eccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCC
Confidence            99999999999999877766766653  58899999999999988866 9999999999998899999999999999999


Q ss_pred             CCEEEEEECCCeEEEEECCCCceEEec-----ccCCceEEEEEeCCCCEE
Q 047260          727 YSTLLVVGGISSLELWNMAENKSMTIA-----AHENIISALAQSPVTGMV  771 (784)
Q Consensus       727 g~~L~s~s~dg~I~Iwdl~~~~~~~~~-----~h~~~V~slafspdg~~L  771 (784)
                      +++|++|+.|++|++||+.........     .+...|.+++|+|++..+
T Consensus       409 g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~  458 (524)
T 2j04_B          409 HPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKY  458 (524)
T ss_dssp             CCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEE
T ss_pred             CCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeE
Confidence            999999999999999998764221111     122257899999999855

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.97  E-value=2e-29  Score=277.73  Aligned_cols=284  Identities=12%  Similarity=0.151  Sum_probs=211.6

Q ss_pred             ccccccccCCCceEecccc-------CCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEE
Q 047260          441 ASASNLLEDIDRFADVGSI-------DENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCC  513 (784)
Q Consensus       441 ~ss~~~~~~~~~ll~~gS~-------D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l  513 (784)
                      +.+..|.++... +.+|+.       ++.+++|..........                ..+.......+.+|...|.|+
T Consensus        17 V~sv~fs~dg~~-l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~v~s~   79 (365)
T 4h5i_A           17 AYGAKFLNNDTL-LVAGGGGEGNNGIPNKLTVLRVDPTKDTEK----------------EQFHILSEFALEDNDDSPTAI   79 (365)
T ss_dssp             EEEEEEEETTEE-EEEEECCSSSSSCCEEEEEEEECTTSSSHH----------------HHEEEEEEEECCTTSCCCCEE
T ss_pred             EEEEEEeCCCcE-EEEECCCccccCCCCEEEEEEEcCCCccee----------------eeeeeeeEEEccCCCCceEEE
Confidence            445666666544 445543       33588887754331111                001112223577899999998


Q ss_pred             EEcCCCCEEEEEe-----------CCCeEEEEECCCCceee----e-----cCCCCCCeEEEEEccCCCEEEEEe--CCC
Q 047260          514 HFSSDGKLLASSG-----------HDRKVVLWNMDTLQTES----T-----PEDHKSVVTDVRFRPNSSQLATAS--VDK  571 (784)
Q Consensus       514 ~fspdg~~Lasgs-----------~Dg~I~IWd~~t~~~~~----~-----l~~h~~~It~i~fspdg~~Latgs--~Dg  571 (784)
                      +++  ++.+++|+           .|+.|++|++.+.....    .     ...+...+.+++|+|||++|++++  .|+
T Consensus        80 ~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~  157 (365)
T 4h5i_A           80 DAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPA  157 (365)
T ss_dssp             EEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSC
T ss_pred             EeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCC
Confidence            875  55677654           47789999986543211    1     123456799999999999987654  689


Q ss_pred             eEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEe-----ecCCeeEEEEecCCCE
Q 047260          572 SVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHI-----TKGGTAQVRFQPRIGQ  646 (784)
Q Consensus       572 ~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~-----~~~~v~~v~fsp~~~~  646 (784)
                      +|+|||+++.. +...+ .|...|.+++|+|++. ++++++.+ .+++|+..+......     +...+.+++|+|++..
T Consensus       158 ~i~iwd~~~~~-~~~~~-~~~~~V~~v~fspdg~-~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~  233 (365)
T 4h5i_A          158 IMRIIDPSDLT-EKFEI-ETRGEVKDLHFSTDGK-VVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTV  233 (365)
T ss_dssp             EEEEEETTTTE-EEEEE-ECSSCCCEEEECTTSS-EEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEE
T ss_pred             EEEEeECCCCc-EEEEe-CCCCceEEEEEccCCc-eEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCE
Confidence            99999999876 34444 4778899999999987 66777744 566666655544332     2245789999999999


Q ss_pred             EEEEECCC----cEEEEECCCCeE----EEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEe-ccCCC
Q 047260          647 LLAAASDK----VVSIFDIETDRQ----THSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQEL-SSNGN  716 (784)
Q Consensus       647 Ll~~s~Dg----~I~IwDl~t~~~----i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l-~~~~~  716 (784)
                      +++++.|+    .+++||+.....    ...+.+|...|++++|+|+|++|++++.| .|+|||+.+++++.++ .+|..
T Consensus       234 l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~  313 (365)
T 4h5i_A          234 LIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSF  313 (365)
T ss_dssp             EEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSS
T ss_pred             EEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccC
Confidence            99999876    688899877643    45677899999999999999999999966 9999999999999886 68999


Q ss_pred             ceEEEEEecCCCEEEEEECCCeEEEEECCCC
Q 047260          717 QFHSCVFHPSYSTLLVVGGISSLELWNMAEN  747 (784)
Q Consensus       717 ~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~  747 (784)
                      .|++++|+||+++|++++.|++|+|||+..+
T Consensus       314 ~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          314 AITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             CEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             CEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            9999999999999999999999999999654

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.2e-29  Score=289.25  Aligned_cols=259  Identities=11%  Similarity=0.103  Sum_probs=210.8

Q ss_pred             cCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcce
Q 047260          505 SRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFC  584 (784)
Q Consensus       505 ~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~  584 (784)
                      .-...|.+++|+|||+++|+++.|++|+  |...++   .+.+|...|.+++|+|+|       .++.+.+|+.+...  
T Consensus        13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~---~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~--   78 (588)
T 2j04_A           13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK---DINCNSKNLFHVKEFPLE-------FENKLDFELAQQNG--   78 (588)
T ss_dssp             CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS---CCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSC--
T ss_pred             HhhccEEEEEECCCCCEEEEEcCCceee--cccccc---eecCCCccEEEEEECCCC-------CcceEEEEeCCCce--
Confidence            4567899999999999999999999999  755554   447999999999999998       45555555543211  


Q ss_pred             eeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecC-----CeeEEEEecCCCEEEEEECCCcEEEE
Q 047260          585 SQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKG-----GTAQVRFQPRIGQLLAAASDKVVSIF  659 (784)
Q Consensus       585 ~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~-----~v~~v~fsp~~~~Ll~~s~Dg~I~Iw  659 (784)
                       .....|...|.+++|+|+|. .+++++.||.|++||.........+..     .+.+++|+|+|.+|++++.||+|+||
T Consensus        79 -~~~~~~~~~V~~vawSPdG~-~LAs~s~dg~V~iwd~~~~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIW  156 (588)
T 2j04_A           79 -LLNSQPVCYPRVCKPSPIDD-WMAVLSNNGNVSVFKDNKMLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFF  156 (588)
T ss_dssp             -SSTTSCSCCEEEEEECSSSS-CEEEEETTSCEEEEETTEEEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEE
T ss_pred             -EeecCCCCcEEEEEECCCCC-EEEEEeCCCcEEEEeCCceeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEEE
Confidence             12225688899999999988 777899999999999765222212222     48999999999999999999999999


Q ss_pred             ECCCCe-------EEEEE----eCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCce---EEEe-ccCCCceEEEEEe
Q 047260          660 DIETDR-------QTHSL----QGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGEC---IQEL-SSNGNQFHSCVFH  724 (784)
Q Consensus       660 Dl~t~~-------~i~~l----~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~---i~~l-~~~~~~I~sl~fs  724 (784)
                      |+..+.       .+..+    .+|...|.+++|+|+| +++++.|++|++||+..+..   ..++ ..|...|.+++|+
T Consensus       157 d~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs  235 (588)
T 2j04_A          157 SIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV  235 (588)
T ss_dssp             ECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE
T ss_pred             ECCCCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE
Confidence            999875       36676    5677899999999999 55555566999999988773   4566 4778899999999


Q ss_pred             cCCCEEEEEECCCeEEEEECCCCceEE-ecccCCceEEEEE--eCCCCEEEEEECCCcEEEeC
Q 047260          725 PSYSTLLVVGGISSLELWNMAENKSMT-IAAHENIISALAQ--SPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       725 pdg~~L~s~s~dg~I~Iwdl~~~~~~~-~~~h~~~V~slaf--spdg~~LaSgs~DG~V~IWd  784 (784)
                        +..|++++ +++|++||+.+++... ..+|.+.|..++|  +|++..|++++.||+ +||.
T Consensus       236 --g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~  294 (588)
T 2j04_A          236 --DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLL  294 (588)
T ss_dssp             --TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEE
T ss_pred             --CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEe
Confidence              57888886 6999999999998854 4489999999999  999999999999999 9884

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.97  E-value=1.2e-28  Score=266.72  Aligned_cols=287  Identities=14%  Similarity=0.208  Sum_probs=232.7

Q ss_pred             CCCCCCcccccccccCC--CceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceE
Q 047260          434 SEGTGSLASASNLLEDI--DRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVT  511 (784)
Q Consensus       434 ~~~~~~~~ss~~~~~~~--~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~  511 (784)
                      ..++...+.++.+.++.  ..++.+|+.|+.+++|+.....                        ......+.+|.+.|+
T Consensus        35 ~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~------------------------~~~~~~~~~h~~~v~   90 (368)
T 3mmy_A           35 TSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSG------------------------QTIPKAQQMHTGPVL   90 (368)
T ss_dssp             SSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTS------------------------CEEEEEEEECSSCEE
T ss_pred             ccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCC------------------------ceeEEEeccccCCEE
Confidence            34455567777887775  5777789999999999884421                        112356778999999


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEE--ccCCCEEEEEeCCCeEEEEcCCCCcceeeecc
Q 047260          512 CCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRF--RPNSSQLATASVDKSVRLWDAANPNFCSQAYT  589 (784)
Q Consensus       512 ~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~f--spdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~  589 (784)
                      +++|+|++++|++++.||.|+|||+.+++.+. +..|...|++++|  ++++.+|++++.||.|++||+++++ ....+.
T Consensus        91 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~  168 (368)
T 3mmy_A           91 DVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN-PMMVLQ  168 (368)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS-CSEEEE
T ss_pred             EEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc-EEEEEe
Confidence            99999999999999999999999999988776 4579999999999  8899999999999999999999876 445555


Q ss_pred             CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEee-----cCCeeEEEEecCCCE----EEEEECCCcEEEEE
Q 047260          590 GHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHIT-----KGGTAQVRFQPRIGQ----LLAAASDKVVSIFD  660 (784)
Q Consensus       590 ~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~-----~~~v~~v~fsp~~~~----Ll~~s~Dg~I~IwD  660 (784)
                      .+ ..+.++.+.+.   .+++++.++.+++|+++........     .....++.+.+....    +++++.|+.|++||
T Consensus       169 ~~-~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~  244 (368)
T 3mmy_A          169 LP-ERCYCADVIYP---MAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHY  244 (368)
T ss_dssp             CS-SCEEEEEEETT---EEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEE
T ss_pred             cC-CCceEEEecCC---eeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEe
Confidence            44 46777777754   6777888999999999865433222     245666777666554    99999999999999


Q ss_pred             CCCC---eEEEEEeCCCC------------CEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEe
Q 047260          661 IETD---RQTHSLQGHAE------------LVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFH  724 (784)
Q Consensus       661 l~t~---~~i~~l~~h~~------------~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fs  724 (784)
                      ++..   ..+..+..|..            .|.+++|+|++.+|++++.+ .|+|||+.+++++..+..|...|.+++|+
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  324 (368)
T 3mmy_A          245 INPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFN  324 (368)
T ss_dssp             SSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEEC
T ss_pred             cCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEEC
Confidence            9987   56777777766            79999999999999999855 99999999999999999999999999999


Q ss_pred             cCCCEEEEEECCCeEE---EEECCCCceE
Q 047260          725 PSYSTLLVVGGISSLE---LWNMAENKSM  750 (784)
Q Consensus       725 pdg~~L~s~s~dg~I~---Iwdl~~~~~~  750 (784)
                      |++.+|++++.|+..+   +|+......+
T Consensus       325 ~~g~~l~~~s~d~~~~~~~~~~~~~~~~i  353 (368)
T 3mmy_A          325 HNGNIFAYASSYDWSKGHEFYNPQKKNYI  353 (368)
T ss_dssp             TTSSCEEEEECCCSTTCGGGCCTTSCCEE
T ss_pred             CCCCeEEEEecccccccccccCCCcccee
Confidence            9999999999987544   4444444443

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.97  E-value=7.4e-29  Score=278.86  Aligned_cols=248  Identities=19%  Similarity=0.364  Sum_probs=215.9

Q ss_pred             EeEeecCCCceEEEEEcCC-CCEEEEEeCCCeEEEEECCC----------CceeeecCCCCCCeEEEEEccCCC-EEEEE
Q 047260          500 VGCIRSRNSKVTCCHFSSD-GKLLASSGHDRKVVLWNMDT----------LQTESTPEDHKSVVTDVRFRPNSS-QLATA  567 (784)
Q Consensus       500 i~~l~~H~~~V~~l~fspd-g~~Lasgs~Dg~I~IWd~~t----------~~~~~~l~~h~~~It~i~fspdg~-~Latg  567 (784)
                      +.....|.+.|++++|+|+ +.+||+++.||.|+|||+.+          ...+..+.+|...|++++|+|++. +|++|
T Consensus       121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~  200 (430)
T 2xyi_A          121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSA  200 (430)
T ss_dssp             EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEE
T ss_pred             EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEE
Confidence            3455679999999999997 77999999999999999986          677788889999999999999988 99999


Q ss_pred             eCCCeEEEEcCCCCcc------eeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC---ee---EEeecCCe
Q 047260          568 SVDKSVRLWDAANPNF------CSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPF---LC---THITKGGT  635 (784)
Q Consensus       568 s~Dg~I~IWdl~~~~~------~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~---~~---~~~~~~~v  635 (784)
                      +.||.|++||+.....      ....+.+|...|.+++|+|++..+|++++.|+.|++||++..   ..   +..+...+
T Consensus       201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v  280 (430)
T 2xyi_A          201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEV  280 (430)
T ss_dssp             CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCE
T ss_pred             eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCe
Confidence            9999999999987432      134566899999999999987889999999999999999865   22   33456789


Q ss_pred             eEEEEecCCC-EEEEEECCCcEEEEECCC-CeEEEEEeCCCCCEEEEEEcCCCC-EEEEEeC-CeEEEEeCCC-------
Q 047260          636 AQVRFQPRIG-QLLAAASDKVVSIFDIET-DRQTHSLQGHAELVNYICWDTNGD-YLASVSQ-NLVKVWSMAS-------  704 (784)
Q Consensus       636 ~~v~fsp~~~-~Ll~~s~Dg~I~IwDl~t-~~~i~~l~~h~~~V~sl~~spdg~-~Lasgsd-d~I~IwDl~t-------  704 (784)
                      .+++|+|++. .+++++.||.|++||+++ ..++..+..|...|.+++|+|++. +|++++. +.|+|||+..       
T Consensus       281 ~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  360 (430)
T 2xyi_A          281 NCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST  360 (430)
T ss_dssp             EEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCH
T ss_pred             EEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCc
Confidence            9999999987 577889999999999998 567888999999999999999985 6777774 5999999987       


Q ss_pred             -------CceEEEeccCCCceEEEEEecCCC-EEEEEECCCeEEEEECCCC
Q 047260          705 -------GECIQELSSNGNQFHSCVFHPSYS-TLLVVGGISSLELWNMAEN  747 (784)
Q Consensus       705 -------~~~i~~l~~~~~~I~sl~fspdg~-~L~s~s~dg~I~Iwdl~~~  747 (784)
                             ...+..+.+|...|.+++|+|+++ +|++++.||.|+||++...
T Consensus       361 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          361 EDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             HHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             cccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence                   367788888999999999999999 8999999999999998754

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=1.2e-28  Score=263.18  Aligned_cols=292  Identities=18%  Similarity=0.207  Sum_probs=214.4

Q ss_pred             CCCCcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEE
Q 047260          436 GTGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHF  515 (784)
Q Consensus       436 ~~~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~f  515 (784)
                      ++...+....+.++.. ++.+|+.|+.+++|+.....                      ..+..+..+.+|...|++++|
T Consensus         9 gH~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~----------------------~~~~~~~~~~~~~~~v~~~~~   65 (351)
T 3f3f_A            9 GHDDLVHDVVYDFYGR-HVATCSSDQHIKVFKLDKDT----------------------SNWELSDSWRAHDSSIVAIDW   65 (351)
T ss_dssp             CCSSCEEEEEECSSSS-EEEEEETTSEEEEEEECSSS----------------------CCEEEEEEEECCSSCEEEEEE
T ss_pred             ccccceeEEEEcCCCC-EEEEeeCCCeEEEEECCCCC----------------------CcceecceeccCCCcEEEEEE
Confidence            3444566777767655 45578899999999874332                      123456778899999999999


Q ss_pred             cC--CCCEEEEEeCCCeEEEEECCCC---------ceeeecCCCCCCeEEEEEccC--CCEEEEEeCCCeEEEEcCCCCc
Q 047260          516 SS--DGKLLASSGHDRKVVLWNMDTL---------QTESTPEDHKSVVTDVRFRPN--SSQLATASVDKSVRLWDAANPN  582 (784)
Q Consensus       516 sp--dg~~Lasgs~Dg~I~IWd~~t~---------~~~~~l~~h~~~It~i~fspd--g~~Latgs~Dg~I~IWdl~~~~  582 (784)
                      +|  |+++|++|+.||.|+|||+.++         +.+..+..|...|++++|+|+  +.+|++++.||.|++||+++.+
T Consensus        66 ~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~  145 (351)
T 3f3f_A           66 ASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPS  145 (351)
T ss_dssp             CCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTT
T ss_pred             cCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChH
Confidence            99  6999999999999999999876         557788899999999999999  9999999999999999998765


Q ss_pred             ceee------------eccCCCCCeEEEEEcCC--CCcEEEEEeCCCeEEEEeCCCCee--EEe---ecCCeeEEEEecC
Q 047260          583 FCSQ------------AYTGHSSPIMSLDFHPK--KTDLFCFCDNDNEIQYWSINPFLC--THI---TKGGTAQVRFQPR  643 (784)
Q Consensus       583 ~~~~------------~~~~h~~~V~sl~~sp~--~~~ll~sgs~dg~I~iwDl~~~~~--~~~---~~~~v~~v~fsp~  643 (784)
                      ....            ....|...+.+++|+|+  ...++++++.++.+.+|+......  +..   +...+.+++|+|+
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~  225 (351)
T 3f3f_A          146 DLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPS  225 (351)
T ss_dssp             CTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCC
T ss_pred             HhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCC
Confidence            2211            11267889999999997  345888899999998888876553  333   3467999999999


Q ss_pred             C----CEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-----CCeEEEEeCCCCceEEEeccC
Q 047260          644 I----GQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVS-----QNLVKVWSMASGECIQELSSN  714 (784)
Q Consensus       644 ~----~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgs-----dd~I~IwDl~t~~~i~~l~~~  714 (784)
                      +    ..|++++.||.|++||++.+........+...+....+.+....+..+.     ...+.+|+....+++..+..|
T Consensus       226 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  305 (351)
T 3f3f_A          226 IGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDH  305 (351)
T ss_dssp             SSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTT
T ss_pred             CCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecc
Confidence            8    7899999999999999988765555444444455555555555444443     226677777778889999999


Q ss_pred             CCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE
Q 047260          715 GNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM  750 (784)
Q Consensus       715 ~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~  750 (784)
                      ...|.+++|+|++++|++++.||.|+|||+.+++..
T Consensus       306 ~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~  341 (351)
T 3f3f_A          306 NGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEF  341 (351)
T ss_dssp             SSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCE
T ss_pred             cccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcch
Confidence            999999999999999999999999999999987644

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=1.4e-27  Score=262.65  Aligned_cols=273  Identities=11%  Similarity=0.123  Sum_probs=222.3

Q ss_pred             ceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCCCEE-EEEeCCCe
Q 047260          452 RFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLL-ASSGHDRK  530 (784)
Q Consensus       452 ~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~~L-asgs~Dg~  530 (784)
                      .++.+++.|+.|++|+....                          ..+..+..|. .+.+++|+|++++| ++++.|+.
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~--------------------------~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~   55 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSN--------------------------KVTATIPVGS-NPMGAVISPDGTKVYVANAHSND   55 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTT--------------------------EEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTE
T ss_pred             EEEEEcCCCCEEEEEECCCC--------------------------eEEEEeecCC-CcceEEECCCCCEEEEECCCCCe
Confidence            45667889999999976322                          2334455554 58999999999977 66778999


Q ss_pred             EEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEe-CCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEE
Q 047260          531 VVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATAS-VDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFC  609 (784)
Q Consensus       531 I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs-~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~  609 (784)
                      |++||+.+++.+..+..+. .|.+++|+|++++|++++ .|+.|++||+.+++ ....+.. ...+.+++|+|++..+++
T Consensus        56 i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~-~~~~~~~-~~~~~~~~~s~dg~~l~~  132 (391)
T 1l0q_A           56 VSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNT-VAGTVKT-GKSPLGLALSPDGKKLYV  132 (391)
T ss_dssp             EEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTE-EEEEEEC-SSSEEEEEECTTSSEEEE
T ss_pred             EEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCe-EEEEEeC-CCCcceEEECCCCCEEEE
Confidence            9999999999988886555 999999999999886554 67999999999876 4444443 457899999999998888


Q ss_pred             EEeCCCeEEEEeCCCCeeEEeec--CCeeEEEEecCCCEEEE-EECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCC
Q 047260          610 FCDNDNEIQYWSINPFLCTHITK--GGTAQVRFQPRIGQLLA-AASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNG  686 (784)
Q Consensus       610 sgs~dg~I~iwDl~~~~~~~~~~--~~v~~v~fsp~~~~Ll~-~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg  686 (784)
                      +++.++.|++||+++.+.+..+.  ..+..++|+|+++.+++ ++.++.|++||+++++.+..+. +...+.+++|+|++
T Consensus       133 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g  211 (391)
T 1l0q_A          133 TNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEG  211 (391)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTS
T ss_pred             EeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCC
Confidence            99999999999999887776654  56788999999998854 4568999999999998887776 56689999999999


Q ss_pred             CEEEEEe----CCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEE-EEECCCeEEEEECCCCceE-EecccC
Q 047260          687 DYLASVS----QNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLL-VVGGISSLELWNMAENKSM-TIAAHE  756 (784)
Q Consensus       687 ~~Lasgs----dd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~-s~s~dg~I~Iwdl~~~~~~-~~~~h~  756 (784)
                      ++|++++    ++.|++||+.+++++..+..+. .+.+++|+|++++|+ +++.|+.|++||+.+++.+ .+..|.
T Consensus       212 ~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~  286 (391)
T 1l0q_A          212 TKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGK  286 (391)
T ss_dssp             SEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS
T ss_pred             CEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCc
Confidence            9888876    3499999999999998887764 578999999999884 5577899999999998876 343443

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.4e-29  Score=303.43  Aligned_cols=247  Identities=19%  Similarity=0.288  Sum_probs=204.6

Q ss_pred             eEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECC--CCceeeecCCCCCCeEEEEEccC--CCEEEEEeCCCeEEEE
Q 047260          501 GCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMD--TLQTESTPEDHKSVVTDVRFRPN--SSQLATASVDKSVRLW  576 (784)
Q Consensus       501 ~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~--t~~~~~~l~~h~~~It~i~fspd--g~~Latgs~Dg~I~IW  576 (784)
                      ..+.+|.+.|++++|+|++++|++|+.||.|+|||+.  +++.+..+.+|...|++++|+++  +++|++|+.||.|++|
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw   82 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW   82 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred             eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence            4578999999999999999999999999999999998  56778888999999999999987  9999999999999999


Q ss_pred             cCCCCcc-eeeeccCCCCCeEEEEEcCCC-CcEEEEEeCCCeEEEEeCCCCeeEEeecCCeeEEEEecCCCEEEEEECCC
Q 047260          577 DAANPNF-CSQAYTGHSSPIMSLDFHPKK-TDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAASDK  654 (784)
Q Consensus       577 dl~~~~~-~~~~~~~h~~~V~sl~~sp~~-~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg  654 (784)
                      |+.++.. ....+.+|...|.+++|+|+. ..++++++.||.|++||++....                           
T Consensus        83 d~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~---------------------------  135 (753)
T 3jro_A           83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT---------------------------  135 (753)
T ss_dssp             EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSC---------------------------
T ss_pred             ECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCC---------------------------
Confidence            9987642 455667788889999998872 23666666666666666653211                           


Q ss_pred             cEEEEECCCCeEEEEEeCCCCCEEEEEEcC-------------CCCEEEEEeCC-eEEEEeCCCC----ceEEEeccCCC
Q 047260          655 VVSIFDIETDRQTHSLQGHAELVNYICWDT-------------NGDYLASVSQN-LVKVWSMASG----ECIQELSSNGN  716 (784)
Q Consensus       655 ~I~IwDl~t~~~i~~l~~h~~~V~sl~~sp-------------dg~~Lasgsdd-~I~IwDl~t~----~~i~~l~~~~~  716 (784)
                                .....+.+|...|.+++|+|             ++.+|++++.+ .|++||++++    .++..+..|..
T Consensus       136 ----------~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~  205 (753)
T 3jro_A          136 ----------TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD  205 (753)
T ss_dssp             ----------CCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS
T ss_pred             ----------cceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCC
Confidence                      12234456888999999999             58888888855 9999999887    56678889999


Q ss_pred             ceEEEEEecC---CCEEEEEECCCeEEEEECCCCc------eEEecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          717 QFHSCVFHPS---YSTLLVVGGISSLELWNMAENK------SMTIAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       717 ~I~sl~fspd---g~~L~s~s~dg~I~Iwdl~~~~------~~~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      .|.+++|+|+   +.+|++++.||.|++||+.++.      ......|...|++++|+|++.+|++++.||.|+|||
T Consensus       206 ~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd  282 (753)
T 3jro_A          206 WVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK  282 (753)
T ss_dssp             CEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCB
T ss_pred             cEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEe
Confidence            9999999999   8999999999999999998873      224456889999999999999999999999999996

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=1.3e-27  Score=263.05  Aligned_cols=260  Identities=11%  Similarity=0.110  Sum_probs=218.6

Q ss_pred             CEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEE-EEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEE
Q 047260          520 KLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQL-ATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSL  598 (784)
Q Consensus       520 ~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~L-atgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl  598 (784)
                      .++++++.|+.|++||+.+++.+..+..|. .+.+++|+|++++| ++++.|+.|++||+.+++ +...+..+. .+.++
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~-~~~~~~~~~-~v~~~   79 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNN-VIATVPAGS-SPQGV   79 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTE-EEEEEECSS-SEEEE
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCe-EEEEEECCC-Cccce
Confidence            467888999999999999999998887665 58999999999977 667789999999998876 444444443 89999


Q ss_pred             EEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec--CCeeEEEEecCCCEEE-EEECCCcEEEEECCCCeEEEEEeCCCC
Q 047260          599 DFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK--GGTAQVRFQPRIGQLL-AAASDKVVSIFDIETDRQTHSLQGHAE  675 (784)
Q Consensus       599 ~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~--~~v~~v~fsp~~~~Ll-~~s~Dg~I~IwDl~t~~~i~~l~~h~~  675 (784)
                      +|+|++..+++++..++.|++||+.+.+.+..+.  ..+.+++|+|+++.++ +++.++.|++||+++++.+..+..+ .
T Consensus        80 ~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~  158 (391)
T 1l0q_A           80 AVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-R  158 (391)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-S
T ss_pred             EECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-C
Confidence            9999999888888888999999999887766554  5678999999999884 5556999999999999998888755 5


Q ss_pred             CEEEEEEcCCCCEEE-EEeC-CeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEE---CCCeEEEEECCCCceE
Q 047260          676 LVNYICWDTNGDYLA-SVSQ-NLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVG---GISSLELWNMAENKSM  750 (784)
Q Consensus       676 ~V~sl~~spdg~~La-sgsd-d~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s---~dg~I~Iwdl~~~~~~  750 (784)
                      .+.+++|+|++++|+ +++. +.|++||+++++++..+.. ...+.+++|+|++++|++++   .++.|++||+.+++.+
T Consensus       159 ~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~  237 (391)
T 1l0q_A          159 SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV-EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT  237 (391)
T ss_dssp             SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEE
T ss_pred             CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEec-CCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEE
Confidence            579999999999885 4444 4999999999988877754 46789999999999999988   6899999999998877


Q ss_pred             EecccCCceEEEEEeCCCCEE-EEEECCCcEEEeC
Q 047260          751 TIAAHENIISALAQSPVTGMV-ASASHDSSVKLWK  784 (784)
Q Consensus       751 ~~~~h~~~V~slafspdg~~L-aSgs~DG~V~IWd  784 (784)
                      ........+.+++|+|++++| ++++.|+.|++||
T Consensus       238 ~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d  272 (391)
T 1l0q_A          238 ARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVID  272 (391)
T ss_dssp             EEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             EEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEE
Confidence            544444568999999999977 6667899999996

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.96  E-value=4e-29  Score=277.93  Aligned_cols=262  Identities=15%  Similarity=0.134  Sum_probs=175.4

Q ss_pred             ecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcee-----eecCCCCCCeEEEEEcc--------CCCEEEEEeCC
Q 047260          504 RSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTE-----STPEDHKSVVTDVRFRP--------NSSQLATASVD  570 (784)
Q Consensus       504 ~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~-----~~l~~h~~~It~i~fsp--------dg~~Latgs~D  570 (784)
                      ..|...+....+++++.+||+|+.|++|+|||+.++...     ..+.+|.+.|++|+|+|        ++++||+|+.|
T Consensus        86 ~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D  165 (393)
T 4gq1_A           86 NLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDD  165 (393)
T ss_dssp             C----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETT
T ss_pred             cccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECC
Confidence            345555555666677889999999999999999887543     45789999999999998        78999999999


Q ss_pred             CeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCCeeEEEEecCCCEEEEE
Q 047260          571 KSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAA  650 (784)
Q Consensus       571 g~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v~~v~fsp~~~~Ll~~  650 (784)
                      ++|+|||+.+.. ....+.+|...|.+++|+|++..+|++++.|+.|++||+++............     ......+. 
T Consensus       166 ~tv~~Wd~~~~~-~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~-----~~~~~~~s-  238 (393)
T 4gq1_A          166 CTLIIWRLTDEG-PILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTEL-----VKNPWLLT-  238 (393)
T ss_dssp             SEEEEEEEETTE-EEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC---------------CSCCCSEE-
T ss_pred             CeEEEEECCCCc-eeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCC-----cccceEEe-
Confidence            999999998766 45556678899999999999888999999999999999987655433221100     00000111 


Q ss_pred             ECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEc-CCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEE-------
Q 047260          651 ASDKVVSIFDIETDRQTHSLQGHAELVNYICWD-TNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSC-------  721 (784)
Q Consensus       651 s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~s-pdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl-------  721 (784)
                              ++...........+|...|.++.|+ +++..|++++.+ .+++||+..++....+..+...+..+       
T Consensus       239 --------~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~  310 (393)
T 4gq1_A          239 --------LNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQ  310 (393)
T ss_dssp             --------EESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEE
T ss_pred             --------cccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccc
Confidence                    1111111122334688899999987 799999999966 99999999887666665544333332       


Q ss_pred             -----------EEec--CCCEEEEEECCCeEEEEECCCCceE-EecccCCceEEEEEeCCCCEEEEEECCCcE
Q 047260          722 -----------VFHP--SYSTLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSV  780 (784)
Q Consensus       722 -----------~fsp--dg~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg~~LaSgs~DG~V  780 (784)
                                 .|+|  ++.++++++.||.|+|||+.++... ....|...|.+++|+|||++||++++||.+
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~Gv~  383 (393)
T 4gq1_A          311 GISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGSVL  383 (393)
T ss_dssp             EECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSEEE
T ss_pred             cccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence                       3333  2335566777999999999988766 667899999999999999999999988753

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1e-28  Score=281.53  Aligned_cols=243  Identities=10%  Similarity=0.093  Sum_probs=202.8

Q ss_pred             cCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCC-----CeEEEEEccCCCEEEEEeCCCeEEEEcCC
Q 047260          505 SRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKS-----VVTDVRFRPNSSQLATASVDKSVRLWDAA  579 (784)
Q Consensus       505 ~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~-----~It~i~fspdg~~Latgs~Dg~I~IWdl~  579 (784)
                      .|...|++|+|||||++||+++.||.|+|||.+.  .+..+. |..     .|.+++|+|||++|++|+.||+|+|||+.
T Consensus        83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~  159 (588)
T 2j04_A           83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIR  159 (588)
T ss_dssp             SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECC
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECC
Confidence            4688999999999999999999999999999654  666676 665     59999999999999999999999999999


Q ss_pred             CCcc------eeeec----cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCee------E-EeecCCeeEEEEec
Q 047260          580 NPNF------CSQAY----TGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLC------T-HITKGGTAQVRFQP  642 (784)
Q Consensus       580 ~~~~------~~~~~----~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~------~-~~~~~~v~~v~fsp  642 (784)
                      ++..      ....+    .+|...|.+++|+|++   +++++.|+.|++||+.....      + ..+...|.+++|+ 
T Consensus       160 ~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs-  235 (588)
T 2j04_A          160 KNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV-  235 (588)
T ss_dssp             CCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE-
T ss_pred             CCccccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE-
Confidence            8652      23444    6788999999999998   66788899999999987653      2 1344679999999 


Q ss_pred             CCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEE--cCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceE
Q 047260          643 RIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICW--DTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFH  719 (784)
Q Consensus       643 ~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~--spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~  719 (784)
                       +..|++++ ++.|++||+.+++......+|...|..+.|  +|++..|++++++ + ++|...                
T Consensus       236 -g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d----------------  296 (588)
T 2j04_A          236 -DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED----------------  296 (588)
T ss_dssp             -TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS----------------
T ss_pred             -CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec----------------
Confidence             57787776 699999999988875444479999999999  9999999999966 7 999977                


Q ss_pred             EEEEecCCCEEEEEECCCeEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEEC
Q 047260          720 SCVFHPSYSTLLVVGGISSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASH  776 (784)
Q Consensus       720 sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs~  776 (784)
                      .+.++|++..+++.  |+++++|+...+....+ .+...|.+++|+|||..+|+++.
T Consensus       297 ~~~~spd~~l~a~~--d~~v~lW~~~g~~l~~~-~~~~~I~~va~SPdG~~lA~~~~  350 (588)
T 2j04_A          297 ELHVTADNIIAPYL--EKKFKKWSTIWNEFNNY-ETTLVIHGISLSPDGYSIAIVYD  350 (588)
T ss_dssp             SEEEECCCSSHHHH--HHHHHHTTTTTTSSSSS-CCEEEEEEEEECTTSSEEEEEEE
T ss_pred             cEEECCCceEEEEc--CCEEEEEECCCCceeee-ccceEEEEEEECCCCCEEEEEEe
Confidence            25699998766664  89999999876664433 44777999999999999999874

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=5.2e-27  Score=255.19  Aligned_cols=244  Identities=18%  Similarity=0.258  Sum_probs=200.5

Q ss_pred             CCcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcC
Q 047260          438 GSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSS  517 (784)
Q Consensus       438 ~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fsp  517 (784)
                      ...+.+..+.++... +.+|+.|+.+++|+....                        ....+..+.+|.+.|++++|++
T Consensus        11 ~~~v~~~~~s~~~~~-l~~~~~dg~i~iw~~~~~------------------------~~~~~~~~~~h~~~v~~~~~~~   65 (379)
T 3jrp_A           11 NELIHDAVLDYYGKR-LATCSSDKTIKIFEVEGE------------------------THKLIDTLTGHEGPVWRVDWAH   65 (379)
T ss_dssp             CCCEEEEEECSSSSE-EEEEETTSCEEEEEEETT------------------------EEEEEEEECCCSSCEEEEEECC
T ss_pred             cccEEEEEEcCCCCE-EEEEECCCcEEEEecCCC------------------------cceeeeEecCCCCcEEEEEeCC
Confidence            344566667666554 557889999999987421                        2345667889999999999998


Q ss_pred             C--CCEEEEEeCCCeEEEEECCCCc--eeeecCCCCCCeEEEEEccC--CCEEEEEeCCCeEEEEcCCCCcc-eeeeccC
Q 047260          518 D--GKLLASSGHDRKVVLWNMDTLQ--TESTPEDHKSVVTDVRFRPN--SSQLATASVDKSVRLWDAANPNF-CSQAYTG  590 (784)
Q Consensus       518 d--g~~Lasgs~Dg~I~IWd~~t~~--~~~~l~~h~~~It~i~fspd--g~~Latgs~Dg~I~IWdl~~~~~-~~~~~~~  590 (784)
                      +  +++|++|+.||.|+|||+.+++  .+..+..|...|++++|+|+  +.+|++++.|+.|++||+.+... ....+..
T Consensus        66 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~  145 (379)
T 3jrp_A           66 PKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDA  145 (379)
T ss_dssp             GGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEEC
T ss_pred             CCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecC
Confidence            7  9999999999999999999887  77788889999999999998  99999999999999999988642 3445678


Q ss_pred             CCCCeEEEEEcCC------------CCcEEEEEeCCCeEEEEeCCCCe----eEE---eecCCeeEEEEecC---CCEEE
Q 047260          591 HSSPIMSLDFHPK------------KTDLFCFCDNDNEIQYWSINPFL----CTH---ITKGGTAQVRFQPR---IGQLL  648 (784)
Q Consensus       591 h~~~V~sl~~sp~------------~~~ll~sgs~dg~I~iwDl~~~~----~~~---~~~~~v~~v~fsp~---~~~Ll  648 (784)
                      |...|.+++|+|.            ...++++++.|+.|++||++...    ...   .+...+.+++|+|+   +.+|+
T Consensus       146 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~  225 (379)
T 3jrp_A          146 HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLA  225 (379)
T ss_dssp             CTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEE
T ss_pred             CCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEE
Confidence            9999999999995            34588899999999999997543    222   24577999999999   89999


Q ss_pred             EEECCCcEEEEECCCCe---EEEEE--eCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCc
Q 047260          649 AAASDKVVSIFDIETDR---QTHSL--QGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGE  706 (784)
Q Consensus       649 ~~s~Dg~I~IwDl~t~~---~i~~l--~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~  706 (784)
                      +++.||.|++||++++.   ....+  ..|...|.+++|+|++.+|++++.+ .|+|||+....
T Consensus       226 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~  289 (379)
T 3jrp_A          226 SVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG  289 (379)
T ss_dssp             EEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred             EEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence            99999999999999863   22222  3488899999999999999988755 99999998654

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.95  E-value=3.4e-26  Score=258.33  Aligned_cols=241  Identities=13%  Similarity=0.083  Sum_probs=201.6

Q ss_pred             eecCCCceEEEEEcCCCCEE-EEEeCCCeEEEEECC--CCceeeecC--CCCCCeEEEEEccCCCEEEEEeCCCeEEEEc
Q 047260          503 IRSRNSKVTCCHFSSDGKLL-ASSGHDRKVVLWNMD--TLQTESTPE--DHKSVVTDVRFRPNSSQLATASVDKSVRLWD  577 (784)
Q Consensus       503 l~~H~~~V~~l~fspdg~~L-asgs~Dg~I~IWd~~--t~~~~~~l~--~h~~~It~i~fspdg~~Latgs~Dg~I~IWd  577 (784)
                      ..+|.+.|++++|+|++++| ++|+.||.|+|||+.  +++.+..+.  .|...|++++|+|++++|++++.||.|++|+
T Consensus        98 ~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~  177 (450)
T 2vdu_B           98 APPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSID  177 (450)
T ss_dssp             --CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             CCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEe
Confidence            45688899999999999996 899999999999999  888888776  5778999999999999999999999999999


Q ss_pred             CCCCcc---eeeeccCCCCCeEEEEEcCC--CCcEEEEEeCCCeEEEEeCCCCeeEEe----ecCCeeEEEEecCCCEEE
Q 047260          578 AANPNF---CSQAYTGHSSPIMSLDFHPK--KTDLFCFCDNDNEIQYWSINPFLCTHI----TKGGTAQVRFQPRIGQLL  648 (784)
Q Consensus       578 l~~~~~---~~~~~~~h~~~V~sl~~sp~--~~~ll~sgs~dg~I~iwDl~~~~~~~~----~~~~v~~v~fsp~~~~Ll  648 (784)
                      +.+...   ....+.+|...|.+++|+|+  +..+|++++.|+.|++||+++..++..    +...+.+++|+ ++.+|+
T Consensus       178 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~  256 (450)
T 2vdu_B          178 INSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLL  256 (450)
T ss_dssp             TTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEE
T ss_pred             cCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEE
Confidence            987653   22366789999999999998  234888999999999999998766544    44789999999 999999


Q ss_pred             EEECCCcEEEEECCCCeEEEEEeC-------------------------CCCCEEEEEEcCCCCEEEEEe-C-CeEEEEe
Q 047260          649 AAASDKVVSIFDIETDRQTHSLQG-------------------------HAELVNYICWDTNGDYLASVS-Q-NLVKVWS  701 (784)
Q Consensus       649 ~~s~Dg~I~IwDl~t~~~i~~l~~-------------------------h~~~V~sl~~spdg~~Lasgs-d-d~I~IwD  701 (784)
                      +++.|+.|++||+++++.+..+..                         ....|.+++|+|++++|++++ . +.|+|||
T Consensus       257 s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~  336 (450)
T 2vdu_B          257 SAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILE  336 (450)
T ss_dssp             EEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEE
T ss_pred             EEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEE
Confidence            999999999999999998888763                         245799999999999999987 4 4999999


Q ss_pred             C--CCC---ceEEEeccCCCceEEEEEecCCCEEEEEEC-------CCeEEEEECCC
Q 047260          702 M--ASG---ECIQELSSNGNQFHSCVFHPSYSTLLVVGG-------ISSLELWNMAE  746 (784)
Q Consensus       702 l--~t~---~~i~~l~~~~~~I~sl~fspdg~~L~s~s~-------dg~I~Iwdl~~  746 (784)
                      +  .++   +++..+..+ ..|.+++|+|++ .+++++.       +..|.+|.+..
T Consensus       337 ~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~-~~v~~~~~~~~~~~~~~i~v~~~~~  391 (450)
T 2vdu_B          337 MSEKQKGDLALKQIITFP-YNVISLSAHNDE-FQVTLDNKESSGVQKNFAKFIEYNL  391 (450)
T ss_dssp             ECSSSTTCEEEEEEEECS-SCEEEEEEETTE-EEEEECCTTCCSSCCCSEEEEEEET
T ss_pred             eccCCCCceeeccEeccC-CceEEEEecCCc-EEEEEecccCCCCCCcceEEEEEEc
Confidence            9  565   677778777 889999999954 4444433       34578887643

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.95  E-value=1.3e-25  Score=250.65  Aligned_cols=278  Identities=12%  Similarity=0.129  Sum_probs=226.8

Q ss_pred             ccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCCCEE
Q 047260          443 ASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLL  522 (784)
Q Consensus       443 s~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~~L  522 (784)
                      ...+.+ ...++.+++.|+.+.+|+...+.   ..                  .......+.+|.+.|.+++|+++++++
T Consensus       127 ~~~~s~-~~~~~~~~~~~~~i~~~d~~~g~---~~------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~  184 (433)
T 3bws_A          127 SVRFID-NTRLAIPLLEDEGMDVLDINSGQ---TV------------------RLSPPEKYKKKLGFVETISIPEHNELW  184 (433)
T ss_dssp             CCEESS-SSEEEEEBTTSSSEEEEETTTCC---EE------------------EECCCHHHHTTCCEEEEEEEGGGTEEE
T ss_pred             EEEEeC-CCeEEEEeCCCCeEEEEECCCCe---Ee------------------eecCcccccccCCceeEEEEcCCCEEE
Confidence            455555 66777778888899999764322   10                  001112346799999999999999999


Q ss_pred             EEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEe-CCCeEEEEcCCCCcceeeeccCCCCCeEEEEEc
Q 047260          523 ASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATAS-VDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFH  601 (784)
Q Consensus       523 asgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs-~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~s  601 (784)
                      ++++.|+.|++||+++++.+..+..|...+.+++|+|+++++++++ .|+.|++||+++++ ....+.. ...+.+++|+
T Consensus       185 ~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~-~~~~~~~-~~~~~~~~~~  262 (433)
T 3bws_A          185 VSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKL-EIRKTDK-IGLPRGLLLS  262 (433)
T ss_dssp             EEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTE-EEEECCC-CSEEEEEEEC
T ss_pred             EEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCc-EEEEecC-CCCceEEEEc
Confidence            9999999999999999999999989999999999999999886554 79999999999866 4444444 4569999999


Q ss_pred             CCCCcEEEEEe-------CCCeEEEEeCCCCeeEEee--cCCeeEEEEecCCCEEEEE-ECCCcEEEEECCCCeEEEEEe
Q 047260          602 PKKTDLFCFCD-------NDNEIQYWSINPFLCTHIT--KGGTAQVRFQPRIGQLLAA-ASDKVVSIFDIETDRQTHSLQ  671 (784)
Q Consensus       602 p~~~~ll~sgs-------~dg~I~iwDl~~~~~~~~~--~~~v~~v~fsp~~~~Ll~~-s~Dg~I~IwDl~t~~~i~~l~  671 (784)
                      |++..+++++.       .|+.|++||+++.+.....  ...+..++|+|+++.++++ +.++.|++||+.+++.+..+.
T Consensus       263 ~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~  342 (433)
T 3bws_A          263 KDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP  342 (433)
T ss_dssp             TTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             CCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec
Confidence            99986655553       5889999999987766554  4678889999999877655 669999999999998888776


Q ss_pred             CCCCCEEEEEEcCCCCEEEEEeC----------------CeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEEC
Q 047260          672 GHAELVNYICWDTNGDYLASVSQ----------------NLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGG  735 (784)
Q Consensus       672 ~h~~~V~sl~~spdg~~Lasgsd----------------d~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~  735 (784)
                       +...+.+++|+|++++|++++.                +.|++||+.+++.+..+.. ...+.+++|+|++++|++++.
T Consensus       343 -~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~  420 (433)
T 3bws_A          343 -VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDF  420 (433)
T ss_dssp             -CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEET
T ss_pred             -CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEEC
Confidence             7788999999999998888774                3899999999999988876 467899999999999998885


Q ss_pred             -CCeEEEEECCC
Q 047260          736 -ISSLELWNMAE  746 (784)
Q Consensus       736 -dg~I~Iwdl~~  746 (784)
                       |+.|++|++..
T Consensus       421 ~d~~i~v~~~~~  432 (433)
T 3bws_A          421 LDHQIRVYRRDG  432 (433)
T ss_dssp             TTTEEEEEEETT
T ss_pred             CCCeEEEEEecC
Confidence             99999999864

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.95  E-value=1.6e-25  Score=259.95  Aligned_cols=303  Identities=10%  Similarity=0.072  Sum_probs=243.1

Q ss_pred             ceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeE
Q 047260          452 RFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKV  531 (784)
Q Consensus       452 ~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I  531 (784)
                      +++.+++.|++|.+|+....                          ..+.++..+.. +.+++|+|||++|++++.|+.|
T Consensus       150 ~~~vs~~~d~~V~v~D~~t~--------------------------~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V  202 (543)
T 1nir_A          150 LFSVTLRDAGQIALVDGDSK--------------------------KIVKVIDTGYA-VHISRMSASGRYLLVIGRDARI  202 (543)
T ss_dssp             EEEEEEGGGTEEEEEETTTC--------------------------CEEEEEECSTT-EEEEEECTTSCEEEEEETTSEE
T ss_pred             EEEEEEcCCCeEEEEECCCc--------------------------eEEEEEecCcc-cceEEECCCCCEEEEECCCCeE
Confidence            45667888999999965222                          13344553333 8999999999999999999999


Q ss_pred             EEEEC--CCCceeeecCCCCCCeEEEEEcc----CCCEEEEEeC-CCeEEEEcCCCCcceeeeccC----------CC-C
Q 047260          532 VLWNM--DTLQTESTPEDHKSVVTDVRFRP----NSSQLATASV-DKSVRLWDAANPNFCSQAYTG----------HS-S  593 (784)
Q Consensus       532 ~IWd~--~t~~~~~~l~~h~~~It~i~fsp----dg~~Latgs~-Dg~I~IWdl~~~~~~~~~~~~----------h~-~  593 (784)
                      ++||+  .+++.+..+. +...+..++|+|    ++++|++++. +++|.|||..+.+ ++..+..          |. .
T Consensus       203 ~v~D~~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~-~~~~i~~~g~~~~~~~~~~~~  280 (543)
T 1nir_A          203 DMIDLWAKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE-PKQIVSTRGMTVDTQTYHPEP  280 (543)
T ss_dssp             EEEETTSSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC-EEEEEECCEECSSSCCEESCC
T ss_pred             EEEECcCCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccc-cceeecccCcccCccccccCC
Confidence            99999  8888888886 556789999999    9999999985 8999999998876 3444332          22 3


Q ss_pred             CeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEE--e--ecCCeeEEEEecCCCEEEEEEC-CCcEEEEECCCCeEEE
Q 047260          594 PIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTH--I--TKGGTAQVRFQPRIGQLLAAAS-DKVVSIFDIETDRQTH  668 (784)
Q Consensus       594 ~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~--~--~~~~v~~v~fsp~~~~Ll~~s~-Dg~I~IwDl~t~~~i~  668 (784)
                      .+.++.++|++..++++...++.|.+||+.+.+.+.  .  ....+..+.|+|+++++++++. ++.|.+||+.+++++.
T Consensus       281 ~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~  360 (543)
T 1nir_A          281 RVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSA  360 (543)
T ss_dssp             CEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred             ceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEE
Confidence            789999999999899999999999999998754322  2  2345678999999999887775 8999999999999998


Q ss_pred             EEeC----CCCCEEEEEEcCC-CCEEEEEe--CCeEEEEeCCC-------CceEEEeccCCCceEEEEEecCCCEEEEEE
Q 047260          669 SLQG----HAELVNYICWDTN-GDYLASVS--QNLVKVWSMAS-------GECIQELSSNGNQFHSCVFHPSYSTLLVVG  734 (784)
Q Consensus       669 ~l~~----h~~~V~sl~~spd-g~~Lasgs--dd~I~IwDl~t-------~~~i~~l~~~~~~I~sl~fspdg~~L~s~s  734 (784)
                      .+..    |.+....+ ++|+ +.+++++.  +++|.|||+.+       ++++.++..+...+..++++|++++|++++
T Consensus       361 ~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~  439 (543)
T 1nir_A          361 LVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDT  439 (543)
T ss_dssp             EEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECC
T ss_pred             eeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEec
Confidence            8874    55444443 4676 66677764  45999999998       899999999988889999999999999987


Q ss_pred             C-------CCeEEEEECCCCceE-Ee---------cccCCceEEEEEeCCCCEEEEEE-----CCCcEEEeC
Q 047260          735 G-------ISSLELWNMAENKSM-TI---------AAHENIISALAQSPVTGMVASAS-----HDSSVKLWK  784 (784)
Q Consensus       735 ~-------dg~I~Iwdl~~~~~~-~~---------~~h~~~V~slafspdg~~LaSgs-----~DG~V~IWd  784 (784)
                      .       +++|.+||+.+++.. ..         ..+...|..++|+|+|+.|+++.     .|+.|.|||
T Consensus       440 ~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D  511 (543)
T 1nir_A          440 TFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVD  511 (543)
T ss_dssp             TTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEE
T ss_pred             CCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEE
Confidence            2       679999999988765 33         35678899999999999888763     379999997

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.95  E-value=1.8e-25  Score=240.52  Aligned_cols=285  Identities=10%  Similarity=0.109  Sum_probs=192.6

Q ss_pred             CCcceeEEeEeecCCCc----eEEEEEcCCCC---EEEEEeCCCeEEEEECCCC---ceeeecCCCCCCeEEEEEccCCC
Q 047260          493 KGFTFCEVGCIRSRNSK----VTCCHFSSDGK---LLASSGHDRKVVLWNMDTL---QTESTPEDHKSVVTDVRFRPNSS  562 (784)
Q Consensus       493 ~~~~~~~i~~l~~H~~~----V~~l~fspdg~---~Lasgs~Dg~I~IWd~~t~---~~~~~l~~h~~~It~i~fspdg~  562 (784)
                      ..-++..+..|+...+.    |.++-|-..|-   .+++++ ...|++|+..+.   +.++++..|..+|..|.|.||..
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   99 (356)
T 2w18_A           21 NPGNLQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVY   99 (356)
T ss_dssp             ---CEEEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCC
T ss_pred             CcceeeeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCccc
Confidence            34456666666665443    45555544332   566666 567999999988   88899999988888888888543


Q ss_pred             EEEEEeCC----CeEEEEcCCCC--c-ceeeeccCCCCCeEEEEEcCCCCcEEEEEe--CCCeEEEEeCCC-CeeE---E
Q 047260          563 QLATASVD----KSVRLWDAANP--N-FCSQAYTGHSSPIMSLDFHPKKTDLFCFCD--NDNEIQYWSINP-FLCT---H  629 (784)
Q Consensus       563 ~Latgs~D----g~I~IWdl~~~--~-~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs--~dg~I~iwDl~~-~~~~---~  629 (784)
                      -|++..-.    +.|+..-+...  . .......+|...|..+   ++ ..++.++.  .|+.|++|++.+ ++.+   .
T Consensus       100 ~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l---~~-g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~  175 (356)
T 2w18_A          100 NLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL---TK-RRLVSSSGTLSDQQVEVMTFAEDGGGKENQF  175 (356)
T ss_dssp             SCEEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEE---TT-TEEEEEESSSTTCEEEEEEECTTSCEEEEEE
T ss_pred             ceeeeeeccccccceEEEEECCCccccccEEEeCCCeEEEEec---CC-CcEEEecccCCCCcEEEEEECCCCceeeeec
Confidence            33332110    11211111111  0 0111112333334333   33 33555533  478888888843 4443   3


Q ss_pred             eecCCeeEEEEec---CCCEEEEEECCCcEEEEECCCCeEEEEEeCCCC---CEEEEEEcCCCCEEE------------E
Q 047260          630 ITKGGTAQVRFQP---RIGQLLAAASDKVVSIFDIETDRQTHSLQGHAE---LVNYICWDTNGDYLA------------S  691 (784)
Q Consensus       630 ~~~~~v~~v~fsp---~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~---~V~sl~~spdg~~La------------s  691 (784)
                      .+...+..++|++   ++..|++++.|++|+|||++++++++++.+|..   .+.+++|+|+|.+++            +
T Consensus       176 ~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laS  255 (356)
T 2w18_A          176 LMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESL  255 (356)
T ss_dssp             ECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC----------
T ss_pred             cCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeec
Confidence            4557788899999   779999999999999999999999999987543   677889999999874            4


Q ss_pred             EeCC-eEEEEeCCCCceEEEe-----ccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE-EecccCCceE-EEE
Q 047260          692 VSQN-LVKVWSMASGECIQEL-----SSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM-TIAAHENIIS-ALA  763 (784)
Q Consensus       692 gsdd-~I~IwDl~t~~~i~~l-----~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~-sla  763 (784)
                      ++.+ +|++||..+++++..+     .+|...+.+..++  +..+++++.|++|+|||+.+++++ ++.+|...+. .++
T Consensus       256 Gs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~va  333 (356)
T 2w18_A          256 RSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVK  333 (356)
T ss_dssp             --CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEE
T ss_pred             cCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEE
Confidence            5555 9999999999988765     3555555444444  778999999999999999999988 6667877655 689


Q ss_pred             EeCCCCEEEEEECCCcEEEeC
Q 047260          764 QSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       764 fspdg~~LaSgs~DG~V~IWd  784 (784)
                      |+||+++|++|+.|++|+|||
T Consensus       334 fSPDG~~LaSGS~D~TIklWd  354 (356)
T 2w18_A          334 WSGTDSHLLAGQKDGNIFVYH  354 (356)
T ss_dssp             ECSSSSEEEEECTTSCEEEEE
T ss_pred             ECCCCCEEEEEECCCcEEEec
Confidence            999999999999999999997

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.95  E-value=3.4e-26  Score=250.72  Aligned_cols=240  Identities=8%  Similarity=0.078  Sum_probs=182.8

Q ss_pred             EEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEe
Q 047260          533 LWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCD  612 (784)
Q Consensus       533 IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs  612 (784)
                      ||++.+...+..+..|...|++++|+|++++|++|+.|+ ++|||+.+..... ..  +...+..+++.+++..++++++
T Consensus         3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~   78 (355)
T 3vu4_A            3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIM-SQ--EMRHLSKVRMLHRTNYVAFVTG   78 (355)
T ss_dssp             ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEE-EE--ECSCCCEEEECTTSSEEEEECS
T ss_pred             cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceee-ee--ecCCeEEEEEcCCCCEEEEEEC
Confidence            566777777777789999999999999999999998775 7899988754222 22  2235788889888887778888


Q ss_pred             CCCeEEEEeCCCCeeEEee--cCCeeEEEEecCCCEEEEEECCCcEEEEECCCC-eEEEEEeCCCCCEEEEEEcCCCCEE
Q 047260          613 NDNEIQYWSINPFLCTHIT--KGGTAQVRFQPRIGQLLAAASDKVVSIFDIETD-RQTHSLQGHAELVNYICWDTNGDYL  689 (784)
Q Consensus       613 ~dg~I~iwDl~~~~~~~~~--~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~-~~i~~l~~h~~~V~sl~~spdg~~L  689 (784)
                      .|+.|++||+.+.+++..+  ...+.++.++++  .+++ +.|+.|++||+.+. +.+..+..   ....+++++  .++
T Consensus        79 ~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~--~~~~-~~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~l  150 (355)
T 3vu4_A           79 VKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSRE--FIVV-SYGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLL  150 (355)
T ss_dssp             STTEEEEEETTTTEEEEEEECSSCEEEEEECSS--EEEE-EETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEE
T ss_pred             CccEEEEEECCCCcEEEEEECCCceEEEEEcCC--EEEE-EEcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEE
Confidence            8999999999988776554  467888888875  3433 45889999999988 66665554   455566777  666


Q ss_pred             EEE--e-CCeEEEEeCCCCc----------------eEEEeccCCCceEEEEEecCCCEEEEEECCCe-EEEEECCCCce
Q 047260          690 ASV--S-QNLVKVWSMASGE----------------CIQELSSNGNQFHSCVFHPSYSTLLVVGGISS-LELWNMAENKS  749 (784)
Q Consensus       690 asg--s-dd~I~IwDl~t~~----------------~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~-I~Iwdl~~~~~  749 (784)
                      +.+  + ++.|++||+.++.                ++..+.+|...|.+++|+|++.+|++++.|++ |+|||+.++++
T Consensus       151 a~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~  230 (355)
T 3vu4_A          151 VYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVL  230 (355)
T ss_dssp             EEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCE
T ss_pred             EEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Confidence            664  3 4599999999865                27888999999999999999999999999998 99999999988


Q ss_pred             E-Eec-c-cCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          750 M-TIA-A-HENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       750 ~-~~~-~-h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      + .+. + |...|++++|+|++++|++++.|+.|+|||
T Consensus       231 ~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~  268 (355)
T 3vu4_A          231 VREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFE  268 (355)
T ss_dssp             EEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEE
T ss_pred             EEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEE
Confidence            7 444 4 999999999999999999999999999996

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.94  E-value=3.4e-26  Score=248.72  Aligned_cols=260  Identities=12%  Similarity=0.070  Sum_probs=196.9

Q ss_pred             CCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCCCEEEEEeCCC
Q 047260          450 IDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDR  529 (784)
Q Consensus       450 ~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg  529 (784)
                      ...++.+|+.|++|++|+...+.   .                       +..+.  ...|.++.|+|+   +++++.|+
T Consensus        47 d~~~l~sg~~Dg~v~iwd~~~~~---~-----------------------~~~~~--~~~v~~~~~~~~---~~s~s~D~   95 (343)
T 3lrv_A           47 DKWVCMCRCEDGALHFTQLKDSK---T-----------------------ITTIT--TPNPRTGGEHPA---IISRGPCN   95 (343)
T ss_dssp             EEEEEEEEEETTEEEEEEESSSS---C-----------------------EEEEE--EECCCTTCCCCS---EEEECSTT
T ss_pred             CCCEEEEECCCCcEEEEECCCCc---E-----------------------EEEEe--cCCceeeeeCCc---eEEecCCC
Confidence            34566789999999999885433   1                       11111  345777888887   99999999


Q ss_pred             eEEEEECC---------CCceeeecC-CCCCCeEEEEEcc--CCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEE
Q 047260          530 KVVLWNMD---------TLQTESTPE-DHKSVVTDVRFRP--NSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMS  597 (784)
Q Consensus       530 ~I~IWd~~---------t~~~~~~l~-~h~~~It~i~fsp--dg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~s  597 (784)
                      +|++|+..         +++.+..+. .|...|.+++|+|  ++++|++++.||+|++||+++++........|...|.+
T Consensus        96 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~  175 (343)
T 3lrv_A           96 RLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSS  175 (343)
T ss_dssp             EEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCE
T ss_pred             eEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEE
Confidence            99999765         445344443 6778999999999  99999999999999999999877433223455668999


Q ss_pred             EEEcCCCCcEEEEEeCCCeEEEEeCCCCeeE-E---e-ecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeC
Q 047260          598 LDFHPKKTDLFCFCDNDNEIQYWSINPFLCT-H---I-TKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQG  672 (784)
Q Consensus       598 l~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~-~---~-~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~  672 (784)
                      ++|+|++. ++++|+.||.|++||+++.... .   . +...+.+++|+|++.+|++++ |+.|++||+++.+.+..+..
T Consensus       176 ~~~~pdg~-~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~  253 (343)
T 3lrv_A          176 GVLHKDSL-LLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPT  253 (343)
T ss_dssp             EEECTTSC-EEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCC
T ss_pred             EEECCCCC-EEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecc
Confidence            99999987 8889999999999999976644 2   2 457899999999999999999 55999999999876554443


Q ss_pred             ---CCCCE--EEEEEcCCCCEEEEEeC--CeEEEEeCCCCceEEEeccCCCceEEEEEec---CCCEEEEEECCCeEEEE
Q 047260          673 ---HAELV--NYICWDTNGDYLASVSQ--NLVKVWSMASGECIQELSSNGNQFHSCVFHP---SYSTLLVVGGISSLELW  742 (784)
Q Consensus       673 ---h~~~V--~sl~~spdg~~Lasgsd--d~I~IwDl~t~~~i~~l~~~~~~I~sl~fsp---dg~~L~s~s~dg~I~Iw  742 (784)
                         |...+  .+++|+|+|++|++++.  +.|+||++.........    ..+..+.|.+   +...+++++.|+.+.++
T Consensus       254 ~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~  329 (343)
T 3lrv_A          254 YTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAI  329 (343)
T ss_dssp             CBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEE
T ss_pred             cccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEE
Confidence               33344  36999999999999774  49999999766543333    4567788888   88899999999988887


Q ss_pred             ECCC
Q 047260          743 NMAE  746 (784)
Q Consensus       743 dl~~  746 (784)
                      -...
T Consensus       330 ~~~~  333 (343)
T 3lrv_A          330 LKTN  333 (343)
T ss_dssp             EECS
T ss_pred             EecC
Confidence            5433

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.94  E-value=2.9e-26  Score=276.60  Aligned_cols=246  Identities=18%  Similarity=0.256  Sum_probs=203.3

Q ss_pred             CCCCcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEE
Q 047260          436 GTGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHF  515 (784)
Q Consensus       436 ~~~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~f  515 (784)
                      ++...+.+..+.++...++ +|+.|+.|++|+....                        ....+..+.+|.+.|++++|
T Consensus         7 gH~~~V~~l~~s~dg~~la-tg~~dg~I~vwd~~~~------------------------~~~~~~~l~~h~~~V~~l~~   61 (753)
T 3jro_A            7 AHNELIHDAVLDYYGKRLA-TCSSDKTIKIFEVEGE------------------------THKLIDTLTGHEGPVWRVDW   61 (753)
T ss_dssp             -CCCCEEEECCCSSSCCEE-EEETTTEEEEEEEETT------------------------EEEEEEEECCCSSCEEEEEE
T ss_pred             cCcceeEEEEECCCCCeEE-EEECCCcEEEEecCCC------------------------CCccceeccCCcCceEEEEe
Confidence            4445566777777766554 6889999999987421                        23456778899999999999


Q ss_pred             cCC--CCEEEEEeCCCeEEEEECCCCc--eeeecCCCCCCeEEEEEccC--CCEEEEEeCCCeEEEEcCCCCc-ceeeec
Q 047260          516 SSD--GKLLASSGHDRKVVLWNMDTLQ--TESTPEDHKSVVTDVRFRPN--SSQLATASVDKSVRLWDAANPN-FCSQAY  588 (784)
Q Consensus       516 spd--g~~Lasgs~Dg~I~IWd~~t~~--~~~~l~~h~~~It~i~fspd--g~~Latgs~Dg~I~IWdl~~~~-~~~~~~  588 (784)
                      +++  +++|++|+.||.|+|||+.+++  .+..+..|...|++++|+|+  +.+|++|+.||.|++||+.+.. .....+
T Consensus        62 s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~  141 (753)
T 3jro_A           62 AHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIII  141 (753)
T ss_dssp             CCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEE
T ss_pred             cCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEe
Confidence            998  9999999999999999999886  77788899999999999998  9999999999999999998763 234456


Q ss_pred             cCCCCCeEEEEEcCC------------CCcEEEEEeCCCeEEEEeCCCC----eeEE---eecCCeeEEEEecC---CCE
Q 047260          589 TGHSSPIMSLDFHPK------------KTDLFCFCDNDNEIQYWSINPF----LCTH---ITKGGTAQVRFQPR---IGQ  646 (784)
Q Consensus       589 ~~h~~~V~sl~~sp~------------~~~ll~sgs~dg~I~iwDl~~~----~~~~---~~~~~v~~v~fsp~---~~~  646 (784)
                      .+|...|.+++|+|.            +..++++|+.||.|++||++..    ....   .+...+.+++|+|+   +..
T Consensus       142 ~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~  221 (753)
T 3jro_A          142 DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSY  221 (753)
T ss_dssp             ECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEE
T ss_pred             ecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCE
Confidence            789999999999995            2447888999999999999865    3333   24577999999999   899


Q ss_pred             EEEEECCCcEEEEECCCCe-----EEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCc
Q 047260          647 LLAAASDKVVSIFDIETDR-----QTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGE  706 (784)
Q Consensus       647 Ll~~s~Dg~I~IwDl~t~~-----~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~  706 (784)
                      +++++.||.|++||++++.     .+.....|...|.+++|+|++.+|++++.+ .|+|||+..+.
T Consensus       222 l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~  287 (753)
T 3jro_A          222 LASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG  287 (753)
T ss_dssp             EEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred             EEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence            9999999999999998864     233334588899999999999999998855 99999998643

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.94  E-value=1e-24  Score=244.49  Aligned_cols=263  Identities=12%  Similarity=0.101  Sum_probs=213.5

Q ss_pred             eEeecCCCceEEEEEcC--------------CCCEEEEEeCC------CeEEEEECCCCceeeecCCCCCCeEEEEEccC
Q 047260          501 GCIRSRNSKVTCCHFSS--------------DGKLLASSGHD------RKVVLWNMDTLQTESTPEDHKSVVTDVRFRPN  560 (784)
Q Consensus       501 ~~l~~H~~~V~~l~fsp--------------dg~~Lasgs~D------g~I~IWd~~t~~~~~~l~~h~~~It~i~fspd  560 (784)
                      ..+.+|...|.++++++              .+..|+.++.+      +.|++||++. .....+..|...|.+++|+|+
T Consensus       111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spd  189 (415)
T 2hqs_A          111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPD  189 (415)
T ss_dssp             EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTT
T ss_pred             eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCC
Confidence            34667877787777764              25566666554      7999999984 456677789999999999999


Q ss_pred             CCEEEEEeCCC---eEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCe--EEEEeCCCCeeEEee--cC
Q 047260          561 SSQLATASVDK---SVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNE--IQYWSINPFLCTHIT--KG  633 (784)
Q Consensus       561 g~~Latgs~Dg---~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~--I~iwDl~~~~~~~~~--~~  633 (784)
                      +++|++++.|+   .|++||+.+++.  ..+..|...+.+++|+|++..++++++.++.  |++||+++.+.....  ..
T Consensus       190 g~~la~~s~~~~~~~i~~~d~~tg~~--~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~  267 (415)
T 2hqs_A          190 GSKLAYVTFESGRSALVIQTLANGAV--RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRS  267 (415)
T ss_dssp             SSEEEEEECTTSSCEEEEEETTTCCE--EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSS
T ss_pred             CCEEEEEEecCCCcEEEEEECCCCcE--EEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCC
Confidence            99999999885   999999998763  3456778899999999999978778876654  999999877654433  35


Q ss_pred             CeeEEEEecCCCEEEEEEC-CC--cEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeC----CeEEEEeCCCCc
Q 047260          634 GTAQVRFQPRIGQLLAAAS-DK--VVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQ----NLVKVWSMASGE  706 (784)
Q Consensus       634 ~v~~v~fsp~~~~Ll~~s~-Dg--~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsd----d~I~IwDl~t~~  706 (784)
                      .+.+++|+|++..|++++. ++  .|++||+.+++. ..+..+...+.+++|+|+|++|++++.    ..|++||+.+++
T Consensus       268 ~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~  346 (415)
T 2hqs_A          268 NNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG  346 (415)
T ss_dssp             CEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC
T ss_pred             cccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCC
Confidence            6889999999999998886 44  688889988764 345557778999999999999988773    289999999987


Q ss_pred             eEEEeccCCCceEEEEEecCCCEEEEEECCC---eEEEEECCCCceEEecccCCceEEEEEeCCCC
Q 047260          707 CIQELSSNGNQFHSCVFHPSYSTLLVVGGIS---SLELWNMAENKSMTIAAHENIISALAQSPVTG  769 (784)
Q Consensus       707 ~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg---~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~  769 (784)
                      +. .+..+. .+.+++|+|++++|++++.++   .|++||+..+....+..|.+.|.+++|+|...
T Consensus       347 ~~-~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~~~~~v~~~~~~~~~~  410 (415)
T 2hqs_A          347 VQ-VLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPYLH  410 (415)
T ss_dssp             EE-ECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEEEEEEECCCCC
T ss_pred             EE-EecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEeeCCCCCCcCCccccccc
Confidence            74 455554 889999999999999988876   79999999888888999999999999999754

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.94  E-value=3.5e-26  Score=254.18  Aligned_cols=256  Identities=14%  Similarity=0.129  Sum_probs=171.6

Q ss_pred             cCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcC--------CC
Q 047260          448 EDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSS--------DG  519 (784)
Q Consensus       448 ~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fsp--------dg  519 (784)
                      +....++++++.|+++++|+.....                     ......+..+.+|.+.|++++|+|        |+
T Consensus        98 ~~~~~~las~~~d~~v~lw~~~~~~---------------------~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~  156 (393)
T 4gq1_A           98 PVYSLFLACVCQDNTVRLIITKNET---------------------IITQHVLGGKSGHHNFVNDIDIADVYSADNRLAE  156 (393)
T ss_dssp             CEEEEEEEEEETTSCEEEEEEETTE---------------------EEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEE
T ss_pred             CCCCCEEEEEeCCCcEEEEECCCCc---------------------cceeeeecccCCCCCceEEEEEccccccccCCCC
Confidence            4455677889999999999875432                     112234556789999999999998        88


Q ss_pred             CEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCC-CEEEEEeCCCeEEEEcCCCCcceeeecc---CCCCCe
Q 047260          520 KLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNS-SQLATASVDKSVRLWDAANPNFCSQAYT---GHSSPI  595 (784)
Q Consensus       520 ~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg-~~Latgs~Dg~I~IWdl~~~~~~~~~~~---~h~~~V  595 (784)
                      ++||+|+.|++|+|||+.++..+..+..|...|.+++|+|++ .+|++++.|++|++||+.++........   .+...+
T Consensus       157 ~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~  236 (393)
T 4gq1_A          157 QVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWL  236 (393)
T ss_dssp             EEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCS
T ss_pred             CEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceE
Confidence            999999999999999999888888888999999999999977 4899999999999999988653221111   111122


Q ss_pred             EEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCCeeEEEEe-cCCCEEEEEECCCcEEEEECCCCeEEEEEeCCC
Q 047260          596 MSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQ-PRIGQLLAAASDKVVSIFDIETDRQTHSLQGHA  674 (784)
Q Consensus       596 ~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v~~v~fs-p~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~  674 (784)
                      ....+.+....                   .....+...+.++.|. +++..+++++.|+.|++||+..++....+..|.
T Consensus       237 ~s~~~~~~~~~-------------------~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~  297 (393)
T 4gq1_A          237 LTLNTLPLVNT-------------------CHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDST  297 (393)
T ss_dssp             EEEESGGGC-------------------------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------
T ss_pred             Eecccccceee-------------------eecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeec
Confidence            22222211110                   0011233456666665 677777777777888888877766555555444


Q ss_pred             CCEEEEE------------------EcC--CCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEE
Q 047260          675 ELVNYIC------------------WDT--NGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVV  733 (784)
Q Consensus       675 ~~V~sl~------------------~sp--dg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~  733 (784)
                      ..+..+.                  |++  ++.++++++++ .|+|||+.+++++..+..|...|.+++|+|+|++|+++
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~a  377 (393)
T 4gq1_A          298 MKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIA  377 (393)
T ss_dssp             ------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred             CccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEE
Confidence            4443332                  332  33456667654 99999999999988888999999999999999999999


Q ss_pred             ECCCeEEEEEC
Q 047260          734 GGISSLELWNM  744 (784)
Q Consensus       734 s~dg~I~Iwdl  744 (784)
                      +.+| +.+|.+
T Consensus       378 s~~G-v~lvrL  387 (393)
T 4gq1_A          378 TEGS-VLLTRL  387 (393)
T ss_dssp             ESSE-EEEEEE
T ss_pred             eCCC-eEEEEE
Confidence            8766 666654

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.93  E-value=2.3e-24  Score=241.60  Aligned_cols=271  Identities=13%  Similarity=0.114  Sum_probs=216.4

Q ss_pred             CceEEEEEcCCCC-EEEEEe----CCC----eEEEEEC--CCCcee--eecCCCCCCeEEEEEcc--------------C
Q 047260          508 SKVTCCHFSSDGK-LLASSG----HDR----KVVLWNM--DTLQTE--STPEDHKSVVTDVRFRP--------------N  560 (784)
Q Consensus       508 ~~V~~l~fspdg~-~Lasgs----~Dg----~I~IWd~--~t~~~~--~~l~~h~~~It~i~fsp--------------d  560 (784)
                      ..|....|.+.|. ++++|+    .||    .|+|||+  .+++.+  ..+.+|...+..+++++              .
T Consensus        63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~  142 (415)
T 2hqs_A           63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAF  142 (415)
T ss_dssp             GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred             cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence            4677888888775 666776    467    8999999  888877  45778888888887775              1


Q ss_pred             CCEEEEEeCC------CeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCC---CeEEEEeCCCCeeEEe-
Q 047260          561 SSQLATASVD------KSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDND---NEIQYWSINPFLCTHI-  630 (784)
Q Consensus       561 g~~Latgs~D------g~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~d---g~I~iwDl~~~~~~~~-  630 (784)
                      +..|+.++.+      +.|++||++..  ....+.+|...|.+++|+|++..+ ++++.+   ..|++||+++.++... 
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~--~~~~l~~~~~~v~~~~~Spdg~~l-a~~s~~~~~~~i~~~d~~tg~~~~l~  219 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYDGY--NQFVVHRSPQPLMSPAWSPDGSKL-AYVTFESGRSALVIQTLANGAVRQVA  219 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETTSC--SCEEEEEESSCEEEEEECTTSSEE-EEEECTTSSCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEEecCCCCccceEEEEcCCCC--CCEEEeCCCCcceeeEEcCCCCEE-EEEEecCCCcEEEEEECCCCcEEEee
Confidence            5667666654      79999999853  355667788999999999999855 445545   4999999998766544 


Q ss_pred             -ecCCeeEEEEecCCCEEEE-EECCC--cEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeC-C---eEEEEeC
Q 047260          631 -TKGGTAQVRFQPRIGQLLA-AASDK--VVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQ-N---LVKVWSM  702 (784)
Q Consensus       631 -~~~~v~~v~fsp~~~~Ll~-~s~Dg--~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsd-d---~I~IwDl  702 (784)
                       +...+.+++|+|+++.|+. ++.++  .|++||+++++. ..+..|...+.+++|+|||++|+++++ +   .|++||+
T Consensus       220 ~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~  298 (415)
T 2hqs_A          220 SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNI  298 (415)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred             cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEEC
Confidence             3467889999999998884 44454  499999998876 567778889999999999999888774 3   7888899


Q ss_pred             CCCceEEEeccCCCceEEEEEecCCCEEEEEECC---CeEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEECCC-
Q 047260          703 ASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGI---SSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHDS-  778 (784)
Q Consensus       703 ~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~d---g~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs~DG-  778 (784)
                      .+++. ..+..+...+.+++|+|++++|++++.+   ..|++||+.+++...+..|. .+.+++|+|++++|++++.|+ 
T Consensus       299 ~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~s~~~~  376 (415)
T 2hqs_A          299 NGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTF-LDETPSLAPNGTMVIYSSSQGM  376 (415)
T ss_dssp             TSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSS-SCEEEEECTTSSEEEEEEEETT
T ss_pred             CCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCCC-CcCCeEEcCCCCEEEEEEcCCC
Confidence            88764 4455667788999999999999988875   58999999999887777665 899999999999999988877 


Q ss_pred             --cEEEeC
Q 047260          779 --SVKLWK  784 (784)
Q Consensus       779 --~V~IWd  784 (784)
                        .|++||
T Consensus       377 ~~~l~~~d  384 (415)
T 2hqs_A          377 GSVLNLVS  384 (415)
T ss_dssp             EEEEEEEE
T ss_pred             ccEEEEEE
Confidence              688885

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.92  E-value=1.8e-23  Score=225.11  Aligned_cols=184  Identities=11%  Similarity=0.065  Sum_probs=143.2

Q ss_pred             cCCCEEEEEe--CCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcC--CCCcEEEEEeCCCeEEEEeCCCCeeEEeecC-
Q 047260          559 PNSSQLATAS--VDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHP--KKTDLFCFCDNDNEIQYWSINPFLCTHITKG-  633 (784)
Q Consensus       559 pdg~~Latgs--~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp--~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~-  633 (784)
                      ++++++.+++  .|+.|++|++.........+.+|...+..++|++  ....+|++++.|++|++||+++++++..+.+ 
T Consensus       143 ~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~  222 (356)
T 2w18_A          143 TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHID  222 (356)
T ss_dssp             TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred             CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCC
Confidence            3454444433  4888888888543335666678888899999988  2345999999999999999999998887753 


Q ss_pred             -----CeeEEEEecCCCEE------------EEEECCCcEEEEECCCCeEEEEE-----eCCCCCEEEEEEcCCCCEEEE
Q 047260          634 -----GTAQVRFQPRIGQL------------LAAASDKVVSIFDIETDRQTHSL-----QGHAELVNYICWDTNGDYLAS  691 (784)
Q Consensus       634 -----~v~~v~fsp~~~~L------------l~~s~Dg~I~IwDl~t~~~i~~l-----~~h~~~V~sl~~spdg~~Las  691 (784)
                           .+.+++|+|++..+            ++++.|++|++||..+++.+..+     .+|...+.+..++  +.++++
T Consensus       223 ~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lAS  300 (356)
T 2w18_A          223 DSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAA  300 (356)
T ss_dssp             C---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEE
T ss_pred             CcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEE
Confidence                 45677899998876            44667999999999999887765     3566665555444  888999


Q ss_pred             EeCC-eEEEEeCCCCceEEEeccCCCceE-EEEEecCCCEEEEEECCCeEEEEEC
Q 047260          692 VSQN-LVKVWSMASGECIQELSSNGNQFH-SCVFHPSYSTLLVVGGISSLELWNM  744 (784)
Q Consensus       692 gsdd-~I~IwDl~t~~~i~~l~~~~~~I~-sl~fspdg~~L~s~s~dg~I~Iwdl  744 (784)
                      ++.| +|+|||+.+++++.++.+|...+. +++|+|++++|++|+.|++|+|||+
T Consensus       301 gS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          301 ILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             EcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            9855 999999999999999998877655 5899999999999999999999995

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.92  E-value=2.9e-22  Score=216.29  Aligned_cols=268  Identities=10%  Similarity=0.035  Sum_probs=217.1

Q ss_pred             CCCceEEEEEcCCCCEEEEEeC-------CCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEE-eCCCeEEEEc
Q 047260          506 RNSKVTCCHFSSDGKLLASSGH-------DRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATA-SVDKSVRLWD  577 (784)
Q Consensus       506 H~~~V~~l~fspdg~~Lasgs~-------Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latg-s~Dg~I~IWd  577 (784)
                      ....+..++|+|++++|++++.       ++.|.+||..+++.+..+.. ...+..++|+|++++++++ ..++.|.+||
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d  117 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAID  117 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence            3456889999999998888774       56899999999998888754 3457889999999966555 5579999999


Q ss_pred             CCCCcceeeeccCCCC---------CeEEEEEcCCCCcEEEEE-eCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCC
Q 047260          578 AANPNFCSQAYTGHSS---------PIMSLDFHPKKTDLFCFC-DNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRI  644 (784)
Q Consensus       578 l~~~~~~~~~~~~h~~---------~V~sl~~sp~~~~ll~sg-s~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~  644 (784)
                      +.+++. ...+..+..         .+.+++|+|++..+++++ ..++.|.+||+.+.+.+..+.   ..+..++|+|++
T Consensus       118 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg  196 (353)
T 3vgz_A          118 AKTGEV-KGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEG  196 (353)
T ss_dssp             TTTCCE-EEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTT
T ss_pred             CCCCee-EEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCC
Confidence            998773 333333222         278899999999777776 458899999999988877665   347889999999


Q ss_pred             CEEEEEECCCcEEEEECCCCeEEEEEeC----CCCCEEEEEEcCCCCEEEEEeC--CeEEEEeCCCCceEEEeccCCCce
Q 047260          645 GQLLAAASDKVVSIFDIETDRQTHSLQG----HAELVNYICWDTNGDYLASVSQ--NLVKVWSMASGECIQELSSNGNQF  718 (784)
Q Consensus       645 ~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~----h~~~V~sl~~spdg~~Lasgsd--d~I~IwDl~t~~~i~~l~~~~~~I  718 (784)
                      +.+++++.++.|.+||+.+++.+..+..    +...+..++|+|+++++++++.  +.|.+||+.+++.+..+....  .
T Consensus       197 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~  274 (353)
T 3vgz_A          197 KRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE--S  274 (353)
T ss_dssp             TEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS--C
T ss_pred             CEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--C
Confidence            9999999999999999999998887764    4567889999999998777663  499999999999888887543  2


Q ss_pred             EEEEEecCCCEEEEEE-CCCeEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEECC
Q 047260          719 HSCVFHPSYSTLLVVG-GISSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHD  777 (784)
Q Consensus       719 ~sl~fspdg~~L~s~s-~dg~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs~D  777 (784)
                      ..++|+|++++++++. .++.|.+||+.+++.+........+.+++|+|++++|+++..+
T Consensus       275 ~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          275 LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCSEEEEEEECTTSCEEEEEEEC
T ss_pred             ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCCCCCeEEEcCCCCEEEEEEcc
Confidence            5799999999777776 5789999999999888655556688999999999977776654

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.92  E-value=4.9e-23  Score=239.01  Aligned_cols=266  Identities=11%  Similarity=0.090  Sum_probs=213.8

Q ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcC--CCCcceeeeccCC
Q 047260          514 HFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDA--ANPNFCSQAYTGH  591 (784)
Q Consensus       514 ~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl--~~~~~~~~~~~~h  591 (784)
                      +|+|++.++++++.|++|.+||..+++++.++..+.. +.+++|+|++++|++++.|++|++||+  .+.+ +...+. +
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~-~~~~i~-~  220 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPT-KVAEIK-I  220 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCE-EEEEEE-C
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCc-EEEEEe-c
Confidence            3788999999999999999999999999998874433 899999999999999999999999999  6655 444454 4


Q ss_pred             CCCeEEEEEcC----CCCcEEEEEeCCCeEEEEeCCCCeeEEeecC--------------CeeEEEEecCCCEEEEEEC-
Q 047260          592 SSPIMSLDFHP----KKTDLFCFCDNDNEIQYWSINPFLCTHITKG--------------GTAQVRFQPRIGQLLAAAS-  652 (784)
Q Consensus       592 ~~~V~sl~~sp----~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~--------------~v~~v~fsp~~~~Ll~~s~-  652 (784)
                      ...+..++|+|    ++..+++++..++.|.+||..+.+++..+..              .+..+.++|++..+++... 
T Consensus       221 g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~  300 (543)
T 1nir_A          221 GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE  300 (543)
T ss_dssp             CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred             CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC
Confidence            55689999999    9987777776799999999998877765532              4678999998887766655 


Q ss_pred             CCcEEEEECCCCeEEE--EEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEeCCCCceEEEecc----CCCceEEEEEe
Q 047260          653 DKVVSIFDIETDRQTH--SLQGHAELVNYICWDTNGDYLASVS--QNLVKVWSMASGECIQELSS----NGNQFHSCVFH  724 (784)
Q Consensus       653 Dg~I~IwDl~t~~~i~--~l~~h~~~V~sl~~spdg~~Lasgs--dd~I~IwDl~t~~~i~~l~~----~~~~I~sl~fs  724 (784)
                      ++.|.+||+.+.+.+.  .+. +...+.++.|+|+|++|++++  +++|.+||+.+++++..+..    |......+ ++
T Consensus       301 ~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~  378 (543)
T 1nir_A          301 TGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VH  378 (543)
T ss_dssp             TTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EE
T ss_pred             CCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CC
Confidence            7999999998865433  443 566788899999999877665  45999999999999988874    43333333 57


Q ss_pred             cCC-CEEEEEE-CCCeEEEEECCC-------CceE-EecccCCceEEEEEeCCCCEEEEEE-------CCCcEEEeC
Q 047260          725 PSY-STLLVVG-GISSLELWNMAE-------NKSM-TIAAHENIISALAQSPVTGMVASAS-------HDSSVKLWK  784 (784)
Q Consensus       725 pdg-~~L~s~s-~dg~I~Iwdl~~-------~~~~-~~~~h~~~V~slafspdg~~LaSgs-------~DG~V~IWd  784 (784)
                      |++ ..++++. .|++|.+||+.+       .+++ ++..|...+..++|+|++++|++++       .+++|.|||
T Consensus       379 p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d  455 (543)
T 1nir_A          379 PKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFD  455 (543)
T ss_dssp             TTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEE
T ss_pred             CCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEE
Confidence            874 4445544 578999999988       6666 6777888889999999999999987       277999997

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.91  E-value=5e-23  Score=246.59  Aligned_cols=274  Identities=12%  Similarity=0.103  Sum_probs=214.8

Q ss_pred             CCceEEEEEcCCCCEEEEEeC-CC-----eEEEEECCCCceeeecCCCCC------------------------CeEEEE
Q 047260          507 NSKVTCCHFSSDGKLLASSGH-DR-----KVVLWNMDTLQTESTPEDHKS------------------------VVTDVR  556 (784)
Q Consensus       507 ~~~V~~l~fspdg~~Lasgs~-Dg-----~I~IWd~~t~~~~~~l~~h~~------------------------~It~i~  556 (784)
                      ...|.+++|||||++|++++. |+     .|++||+.+++....+..+..                        .|.+++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            456999999999999999998 88     899999999887766654433                        388999


Q ss_pred             EccCCCEEEEEeCCCeEEEEcCCCCc-ceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCC-
Q 047260          557 FRPNSSQLATASVDKSVRLWDAANPN-FCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGG-  634 (784)
Q Consensus       557 fspdg~~Latgs~Dg~I~IWdl~~~~-~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~-  634 (784)
                      |+|||++|++++. +.|++||+.++. .....+..|...+.+++|+|++..+++ ++ ++.|++||+.+.......... 
T Consensus       116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~-~~-~~~i~~~d~~~g~~~~~~~~~~  192 (741)
T 2ecf_A          116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSF-IR-GRNLWVIDLASGRQMQLTADGS  192 (741)
T ss_dssp             ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEE-EE-TTEEEEEETTTTEEEECCCCCC
T ss_pred             ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEE-Ee-CCcEEEEecCCCCEEEeccCCc
Confidence            9999999999986 999999998761 013345667788999999999985544 44 569999999987766554322 


Q ss_pred             ------------------eeEEEEecCCCEEEEEECCC---------------------------------cEEEEECCC
Q 047260          635 ------------------TAQVRFQPRIGQLLAAASDK---------------------------------VVSIFDIET  663 (784)
Q Consensus       635 ------------------v~~v~fsp~~~~Ll~~s~Dg---------------------------------~I~IwDl~t  663 (784)
                                        +..+.|+|++++|++++.|+                                 .|.+||+.+
T Consensus       193 ~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~  272 (741)
T 2ecf_A          193 TTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAE  272 (741)
T ss_dssp             SSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSST
T ss_pred             cceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCC
Confidence                              36799999999999988765                                 789999988


Q ss_pred             -CeEEEEEe--CCCCCEEEEEEcCCCCEEEEEeC-----C-eEEEEeCCCCceEEEeccCCC----ceEEEEEecCCCEE
Q 047260          664 -DRQTHSLQ--GHAELVNYICWDTNGDYLASVSQ-----N-LVKVWSMASGECIQELSSNGN----QFHSCVFHPSYSTL  730 (784)
Q Consensus       664 -~~~i~~l~--~h~~~V~sl~~spdg~~Lasgsd-----d-~I~IwDl~t~~~i~~l~~~~~----~I~sl~fspdg~~L  730 (784)
                       ++......  .|...+..++| |||++|++++.     + .|++||+.++++...+..+..    .+..++|+|+++++
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~  351 (741)
T 2ecf_A          273 QAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSIL  351 (741)
T ss_dssp             TCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEE
T ss_pred             CCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEE
Confidence             77654433  36778999999 99999887652     2 899999999988777665443    45688999999988


Q ss_pred             EEEECCCeEEEEECC-CCceEEecccCCceEEE-EEeCCCCEEEEE-ECCC--cEEEeC
Q 047260          731 LVVGGISSLELWNMA-ENKSMTIAAHENIISAL-AQSPVTGMVASA-SHDS--SVKLWK  784 (784)
Q Consensus       731 ~s~s~dg~I~Iwdl~-~~~~~~~~~h~~~V~sl-afspdg~~LaSg-s~DG--~V~IWd  784 (784)
                      ++++.+|.++||.+. ++....+..|...|..+ .|+|+++.|+.. +.|+  .++||+
T Consensus       352 ~~~~~~g~~~l~~~~~~~~~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~  410 (741)
T 2ecf_A          352 WSSERTGFQHLYRIDSKGKAAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYA  410 (741)
T ss_dssp             EEECTTSSCEEEEECSSSCEEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEE
T ss_pred             EEecCCCccEEEEEcCCCCeeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEE
Confidence            888888877777654 23355677788888887 599999977654 4455  888884

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.91  E-value=3.3e-22  Score=214.55  Aligned_cols=268  Identities=13%  Similarity=0.125  Sum_probs=202.3

Q ss_pred             EEcCCCCE-EEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeC-CCeEEEEcCCCCcceeeeccCC
Q 047260          514 HFSSDGKL-LASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASV-DKSVRLWDAANPNFCSQAYTGH  591 (784)
Q Consensus       514 ~fspdg~~-Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~-Dg~I~IWdl~~~~~~~~~~~~h  591 (784)
                      .|.+++.+ +++++.++.|.+||+.+++.+..+..+...+ +++|+|++++|++++. ++.|.+||+.+++.....+..+
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~   82 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEG   82 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEEC
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccC
Confidence            45665554 6777889999999999999988887777777 9999999997777666 8999999999877425555566


Q ss_pred             CCCeEEEEEcCCCCcEEEEEeCC-C--eEEEEeCCCCeeEEeec--CCeeEEEEecCCCEEEEEEC-CCc-EEEEECCCC
Q 047260          592 SSPIMSLDFHPKKTDLFCFCDND-N--EIQYWSINPFLCTHITK--GGTAQVRFQPRIGQLLAAAS-DKV-VSIFDIETD  664 (784)
Q Consensus       592 ~~~V~sl~~sp~~~~ll~sgs~d-g--~I~iwDl~~~~~~~~~~--~~v~~v~fsp~~~~Ll~~s~-Dg~-I~IwDl~t~  664 (784)
                      ..++.+++|+|++..++ ++..+ +  .|.+||+.+.+.+..+.  .....++|+|+++++++++. ++. |.+|++...
T Consensus        83 ~~~~~~~~~s~dg~~l~-~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~  161 (331)
T 3u4y_A           83 QSSMADVDITPDDQFAV-TVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDAD  161 (331)
T ss_dssp             SSCCCCEEECTTSSEEE-ECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTT
T ss_pred             CCCccceEECCCCCEEE-EecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCC
Confidence            66665699999998666 44444 3  99999999887766554  45689999999987776654 588 999998764


Q ss_pred             eEE----EEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEeCCCCce---EEEeccCCCceEEEEEecCCCEEEEEEC
Q 047260          665 RQT----HSLQGHAELVNYICWDTNGDYLASVS--QNLVKVWSMASGEC---IQELSSNGNQFHSCVFHPSYSTLLVVGG  735 (784)
Q Consensus       665 ~~i----~~l~~h~~~V~sl~~spdg~~Lasgs--dd~I~IwDl~t~~~---i~~l~~~~~~I~sl~fspdg~~L~s~s~  735 (784)
                      ..+    ............++|+|+|++++++.  ++.|.+||+.+++.   +..+..+ ..+..++|+|++++++++..
T Consensus       162 g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~  240 (331)
T 3u4y_A          162 GVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSRDGSTVYVLTE  240 (331)
T ss_dssp             CCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECTTSSEEEEECS
T ss_pred             CcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEECCCCCEEEEEEc
Confidence            332    12223455689999999999776655  34999999999988   7777654 66789999999998877664


Q ss_pred             -CCeEEEEECCCCceEE---eccc----CC---ceEEEEEeCCCCEEEEEEC-CCcEEEeC
Q 047260          736 -ISSLELWNMAENKSMT---IAAH----EN---IISALAQSPVTGMVASASH-DSSVKLWK  784 (784)
Q Consensus       736 -dg~I~Iwdl~~~~~~~---~~~h----~~---~V~slafspdg~~LaSgs~-DG~V~IWd  784 (784)
                       ++.|.+||+.+++...   +..+    ..   .+..++|+||+++|++++. ++.|.|||
T Consensus       241 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d  301 (331)
T 3u4y_A          241 STVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFT  301 (331)
T ss_dssp             SEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEE
Confidence             6789999999987731   1111    12   2356899999998876655 66999996

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.91  E-value=5.4e-22  Score=212.93  Aligned_cols=292  Identities=10%  Similarity=0.081  Sum_probs=212.5

Q ss_pred             cccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCCCEEEEE
Q 047260          446 LLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASS  525 (784)
Q Consensus       446 ~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~~Lasg  525 (784)
                      |..+...++.+.+.++.|.+|+.....                          .+..+..+...+ +++|+|+|++|+++
T Consensus         5 ~~~~~~~~~v~~~~~~~v~~~d~~~~~--------------------------~~~~~~~~~~~~-~~~~s~dg~~l~~~   57 (331)
T 3u4y_A            5 FQTTSNFGIVVEQHLRRISFFSTDTLE--------------------------ILNQITLGYDFV-DTAITSDCSNVVVT   57 (331)
T ss_dssp             --CCCCEEEEEEGGGTEEEEEETTTCC--------------------------EEEEEECCCCEE-EEEECSSSCEEEEE
T ss_pred             EcCCCCEEEEEecCCCeEEEEeCcccc--------------------------eeeeEEccCCcc-eEEEcCCCCEEEEE
Confidence            345566666678888999999763322                          122333455667 99999999977766


Q ss_pred             eC-CCeEEEEECCCCce-eeecCCCCCCeEEEEEccCCCEEEEEeCCC---eEEEEcCCCCcceeeeccCCCCCeEEEEE
Q 047260          526 GH-DRKVVLWNMDTLQT-ESTPEDHKSVVTDVRFRPNSSQLATASVDK---SVRLWDAANPNFCSQAYTGHSSPIMSLDF  600 (784)
Q Consensus       526 s~-Dg~I~IWd~~t~~~-~~~l~~h~~~It~i~fspdg~~Latgs~Dg---~I~IWdl~~~~~~~~~~~~h~~~V~sl~~  600 (784)
                      +. ++.|.+||+.+++. ...+..+..++.+++|+|++++|+++..++   .|.+||+.+++ ....+.. ...+.+++|
T Consensus        58 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~-~~~~~~~-~~~~~~~~~  135 (331)
T 3u4y_A           58 SDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNK-FISTIPI-PYDAVGIAI  135 (331)
T ss_dssp             ESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTE-EEEEEEC-CTTEEEEEE
T ss_pred             eCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCC-eEEEEEC-CCCccceEE
Confidence            65 88999999999887 777777776666699999999999555553   89999999876 3444433 345799999


Q ss_pred             cCCCCcEEEEEeCCCe-EEEEeCCCCeeE-----E--eecCCeeEEEEecCCCEEEEEEC-CCcEEEEECCCCeE---EE
Q 047260          601 HPKKTDLFCFCDNDNE-IQYWSINPFLCT-----H--ITKGGTAQVRFQPRIGQLLAAAS-DKVVSIFDIETDRQ---TH  668 (784)
Q Consensus       601 sp~~~~ll~sgs~dg~-I~iwDl~~~~~~-----~--~~~~~v~~v~fsp~~~~Ll~~s~-Dg~I~IwDl~t~~~---i~  668 (784)
                      +|++..+++++..++. |.+|+++....+     .  ........++|+|+++++++++. ++.|.+||+.+++.   +.
T Consensus       136 spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~  215 (331)
T 3u4y_A          136 SPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLN  215 (331)
T ss_dssp             CTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEE
T ss_pred             CCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceee
Confidence            9999988888888788 999998753221     1  11245788999999998877765 79999999998887   77


Q ss_pred             EEeCCCCCEEEEEEcCCCCEEEEEeC--CeEEEEeCCCCce--EEEeccC----CCc---eEEEEEecCCCEEEEEECC-
Q 047260          669 SLQGHAELVNYICWDTNGDYLASVSQ--NLVKVWSMASGEC--IQELSSN----GNQ---FHSCVFHPSYSTLLVVGGI-  736 (784)
Q Consensus       669 ~l~~h~~~V~sl~~spdg~~Lasgsd--d~I~IwDl~t~~~--i~~l~~~----~~~---I~sl~fspdg~~L~s~s~d-  736 (784)
                      .+.. ...+..++|+|+|++|+++..  +.|.+||+.+++.  +..+..+    ...   ...++|+|++++|++++.+ 
T Consensus       216 ~~~~-~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~  294 (331)
T 3u4y_A          216 AVGT-NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANIS  294 (331)
T ss_dssp             EEEC-SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTT
T ss_pred             eccC-CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCC
Confidence            7764 466788999999998877663  3899999999876  4444322    222   2458999999998777765 


Q ss_pred             CeEEEEECCCCceEEecccCCceEEEEEeCC
Q 047260          737 SSLELWNMAENKSMTIAAHENIISALAQSPV  767 (784)
Q Consensus       737 g~I~Iwdl~~~~~~~~~~h~~~V~slafspd  767 (784)
                      +.|.+||+.......+...+..-....++|+
T Consensus       295 ~~v~v~d~~~~~~~~~~~~~~~g~~~~~~~~  325 (331)
T 3u4y_A          295 RELKVFTISGKVVGYVAGIEANGGIAICHPD  325 (331)
T ss_dssp             TEEEEEETTSCEEEECTTCCCBSCEEECCCC
T ss_pred             CcEEEEEecCCcccceecccccCCeEEECCc
Confidence            6999999988765554444333223334444

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.91  E-value=1.8e-22  Score=241.74  Aligned_cols=270  Identities=11%  Similarity=0.116  Sum_probs=202.8

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--eeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCccee
Q 047260          508 SKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQ--TESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCS  585 (784)
Q Consensus       508 ~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~--~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~  585 (784)
                      ..|.+++|||||++|++++. +.|++||+.++.  ....+..|...+.+++|+|||++|++++ ++.|++||+.++. ..
T Consensus       109 ~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~-~~  185 (741)
T 2ecf_A          109 TGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGR-QM  185 (741)
T ss_dssp             EESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTE-EE
T ss_pred             cCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCC-EE
Confidence            34889999999999999886 899999999873  4456677888999999999999999987 4699999998865 33


Q ss_pred             eeccCCCCC----------------eEEEEEcCCCCcEEEEEeCCC--------------------------------eE
Q 047260          586 QAYTGHSSP----------------IMSLDFHPKKTDLFCFCDNDN--------------------------------EI  617 (784)
Q Consensus       586 ~~~~~h~~~----------------V~sl~~sp~~~~ll~sgs~dg--------------------------------~I  617 (784)
                      .....+...                +.+++|+||+..++++...++                                .|
T Consensus       186 ~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l  265 (741)
T 2ecf_A          186 QLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL  265 (741)
T ss_dssp             ECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred             EeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence            333333332                478999999997766554332                                78


Q ss_pred             EEEeCCC-CeeEEee-----cCCeeEEEEecCCCEEEEEEC-----CCcEEEEECCCCeEEEEEeCCCC----CEEEEEE
Q 047260          618 QYWSINP-FLCTHIT-----KGGTAQVRFQPRIGQLLAAAS-----DKVVSIFDIETDRQTHSLQGHAE----LVNYICW  682 (784)
Q Consensus       618 ~iwDl~~-~~~~~~~-----~~~v~~v~fsp~~~~Ll~~s~-----Dg~I~IwDl~t~~~i~~l~~h~~----~V~sl~~  682 (784)
                      ++||+.+ .+.....     ...+..++| |+++.|++++.     +..|++||+.+++....+..+..    .+.+++|
T Consensus       266 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~  344 (741)
T 2ecf_A          266 GVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRF  344 (741)
T ss_dssp             EEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEE
T ss_pred             EEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEE
Confidence            8999987 7655443     245678999 99999988764     56899999999987777665443    4568899


Q ss_pred             cCCCCEEEEEeCC-eEEEEeCC-CCceEEEeccCCCceEEE-EEecCCCEEEEEECC-C--eEEEEECCC-CceE-Eecc
Q 047260          683 DTNGDYLASVSQN-LVKVWSMA-SGECIQELSSNGNQFHSC-VFHPSYSTLLVVGGI-S--SLELWNMAE-NKSM-TIAA  754 (784)
Q Consensus       683 spdg~~Lasgsdd-~I~IwDl~-t~~~i~~l~~~~~~I~sl-~fspdg~~L~s~s~d-g--~I~Iwdl~~-~~~~-~~~~  754 (784)
                      +|||+++++++.+ .++||.+. ++. +..+..+...+..+ .|+|+++.|++.+.+ +  .++||++.. +... .+..
T Consensus       345 spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~  423 (741)
T 2ecf_A          345 LDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK  423 (741)
T ss_dssp             CTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC
T ss_pred             CCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc
Confidence            9999988887755 56666554 344 77888887888887 599999988766554 4  899998764 4433 4433


Q ss_pred             cCCceEEEEEeCCCCEEEEEECC----CcEEEe
Q 047260          755 HENIISALAQSPVTGMVASASHD----SSVKLW  783 (784)
Q Consensus       755 h~~~V~slafspdg~~LaSgs~D----G~V~IW  783 (784)
                       ...+..++|+||+++|+....+    ..+.+|
T Consensus       424 -~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~  455 (741)
T 2ecf_A          424 -APGMHSASFARNASVYVDSWSNNSTPPQIELF  455 (741)
T ss_dssp             -SCSEEEEEECTTSSEEEEEEEETTEEEEEEEE
T ss_pred             -CCCceEEEECCCCCEEEEEecCCCCCCeEEEE
Confidence             6678899999999988776443    345554

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.91  E-value=2.9e-22  Score=214.78  Aligned_cols=262  Identities=12%  Similarity=0.192  Sum_probs=191.9

Q ss_pred             EEEEEeCCCeEEEEECC-CC--ceeeecCCCCCCeEEEEEccCCCEEEEEeCC-CeEEEEcCC--CCcc-eeeeccCCCC
Q 047260          521 LLASSGHDRKVVLWNMD-TL--QTESTPEDHKSVVTDVRFRPNSSQLATASVD-KSVRLWDAA--NPNF-CSQAYTGHSS  593 (784)
Q Consensus       521 ~Lasgs~Dg~I~IWd~~-t~--~~~~~l~~h~~~It~i~fspdg~~Latgs~D-g~I~IWdl~--~~~~-~~~~~~~h~~  593 (784)
                      ++++++.|+.|++||++ ++  +.+..+ .|...+.+++|+|++++|++++.+ +.|++|+++  ++.. ....+..+ .
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~   84 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP-G   84 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS-S
T ss_pred             EEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC-C
Confidence            34444789999999996 33  233333 577889999999999999998887 999999997  4442 22233333 3


Q ss_pred             CeEEEEEcCCCCcEEEEEeCCCeEEEEeC---CCCeeEEeec--CCeeEEEEecCCCEEEEEE-CCCcEEEEECCC-CeE
Q 047260          594 PIMSLDFHPKKTDLFCFCDNDNEIQYWSI---NPFLCTHITK--GGTAQVRFQPRIGQLLAAA-SDKVVSIFDIET-DRQ  666 (784)
Q Consensus       594 ~V~sl~~sp~~~~ll~sgs~dg~I~iwDl---~~~~~~~~~~--~~v~~v~fsp~~~~Ll~~s-~Dg~I~IwDl~t-~~~  666 (784)
                      .+.+++|+|++..+++++..++.|.+||+   ..........  ..+.+++|+|+++++++++ .++.|.+||+.+ ++.
T Consensus        85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~  164 (343)
T 1ri6_A           85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHL  164 (343)
T ss_dssp             CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred             CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCce
Confidence            78999999999977777777999999999   3333443333  4578899999999999888 789999999987 544


Q ss_pred             EE----EEeC-CCCCEEEEEEcCCCCEEEEEe--CCeEEEEeCCC--Cce--EEEec---cC---CCceEEEEEecCCCE
Q 047260          667 TH----SLQG-HAELVNYICWDTNGDYLASVS--QNLVKVWSMAS--GEC--IQELS---SN---GNQFHSCVFHPSYST  729 (784)
Q Consensus       667 i~----~l~~-h~~~V~sl~~spdg~~Lasgs--dd~I~IwDl~t--~~~--i~~l~---~~---~~~I~sl~fspdg~~  729 (784)
                      ..    .+.. ....+.+++|+|++++|++++  ++.|.+||+..  ++.  +..+.   ..   ...+..++|+|++++
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~  244 (343)
T 1ri6_A          165 VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRH  244 (343)
T ss_dssp             EEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSE
T ss_pred             eeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCE
Confidence            32    2232 345788999999999776665  44999999953  432  33332   11   235668999999998


Q ss_pred             EEEEE-CCCeEEEEECC--CCc--eEEecccCCceEEEEEeCCCCEEEEEE-CCCcEEEeC
Q 047260          730 LLVVG-GISSLELWNMA--ENK--SMTIAAHENIISALAQSPVTGMVASAS-HDSSVKLWK  784 (784)
Q Consensus       730 L~s~s-~dg~I~Iwdl~--~~~--~~~~~~h~~~V~slafspdg~~LaSgs-~DG~V~IWd  784 (784)
                      |+++. .++.|.+||+.  ++.  .+........+.+++|+|++++|++++ .|+.|.||+
T Consensus       245 l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~  305 (343)
T 1ri6_A          245 LYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYE  305 (343)
T ss_dssp             EEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEE
T ss_pred             EEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCCCCeEEEEE
Confidence            88665 68899999998  332  222222233489999999999888887 689999994

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.90  E-value=2.4e-22  Score=209.57  Aligned_cols=251  Identities=12%  Similarity=0.093  Sum_probs=194.5

Q ss_pred             EeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCC-CcceeeeccCC-CCCeEEEEEcC
Q 047260          525 SGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAAN-PNFCSQAYTGH-SSPIMSLDFHP  602 (784)
Q Consensus       525 gs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~-~~~~~~~~~~h-~~~V~sl~~sp  602 (784)
                      ++.|+.|++||+.+++... +..|...|.+++|+|++++|++++ ++.|++||+.+ ++ .......+ ...|.+++|+|
T Consensus        18 ~~~~~~i~~~d~~~~~~~~-~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~sp   94 (297)
T 2ojh_A           18 GSMRSSIEIFNIRTRKMRV-VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPS-PEKVDTGFATICNNDHGISP   94 (297)
T ss_dssp             CCCCEEEEEEETTTTEEEE-EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCS-CEECCCTTCCCBCSCCEECT
T ss_pred             CCcceeEEEEeCCCCceee-eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCC-ceEeccccccccccceEECC
Confidence            4678999999999887664 446889999999999999999987 78999999998 65 44444444 46789999999


Q ss_pred             CCCcEEEEEe-C--CCeEEEEeCCCCeeEEee-cCCeeEEEEecCCCEEE-EEECCCcEEEEECCC-CeEEEEEeCCCCC
Q 047260          603 KKTDLFCFCD-N--DNEIQYWSINPFLCTHIT-KGGTAQVRFQPRIGQLL-AAASDKVVSIFDIET-DRQTHSLQGHAEL  676 (784)
Q Consensus       603 ~~~~ll~sgs-~--dg~I~iwDl~~~~~~~~~-~~~v~~v~fsp~~~~Ll-~~s~Dg~I~IwDl~t-~~~i~~l~~h~~~  676 (784)
                      ++..+++++. .  ...|..|++......... ...+..++|+|++..|+ ++..++.+.||+++. ......+..+...
T Consensus        95 dg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  174 (297)
T 2ojh_A           95 DGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGR  174 (297)
T ss_dssp             TSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSC
T ss_pred             CCCEEEEEEeCCCCcceEEEEECCCCceEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCc
Confidence            9985555442 2  345555565554433222 24578889999999887 566789999998642 2344566678889


Q ss_pred             EEEEEEcCCCCEEEEEe--CCeEEEEeCC-CCceEEEeccCCCceEEEEEecCCCEEEEEECC-----------CeEEEE
Q 047260          677 VNYICWDTNGDYLASVS--QNLVKVWSMA-SGECIQELSSNGNQFHSCVFHPSYSTLLVVGGI-----------SSLELW  742 (784)
Q Consensus       677 V~sl~~spdg~~Lasgs--dd~I~IwDl~-t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~d-----------g~I~Iw  742 (784)
                      +.+++|+|++++|+.++  ++.++||++. .+..+..+..+...+.++.|+|++++|++++.+           +.|++|
T Consensus       175 ~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~  254 (297)
T 2ojh_A          175 NDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLM  254 (297)
T ss_dssp             EEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEE
T ss_pred             cccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEE
Confidence            99999999999888766  3488888876 556677888887889999999999999988876           569999


Q ss_pred             ECCCCceE---EecccCCceEEEEEeCCCCEEEEEECCC
Q 047260          743 NMAENKSM---TIAAHENIISALAQSPVTGMVASASHDS  778 (784)
Q Consensus       743 dl~~~~~~---~~~~h~~~V~slafspdg~~LaSgs~DG  778 (784)
                      |+.+++..   .+..|...|.+++|+|++++|++++.|.
T Consensus       255 d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          255 DMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             ETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             ecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence            99988754   3447888999999999999988887654

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.90  E-value=2.1e-21  Score=208.03  Aligned_cols=290  Identities=10%  Similarity=0.059  Sum_probs=203.7

Q ss_pred             eEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCCCEEEEEeCC-CeE
Q 047260          453 FADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHD-RKV  531 (784)
Q Consensus       453 ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~D-g~I  531 (784)
                      ++.+++.|+.+.+|+....+                       .+..+.. ..|...+.+++|+|+|++|++++.+ +.|
T Consensus         7 l~~~~~~~~~v~~~~~~~~~-----------------------~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v   62 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEG-----------------------ALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRV   62 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTS-----------------------CEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEE
T ss_pred             EEEeCCCCCeEEEEEECCCC-----------------------cEEEeee-EecCCCCceEEECCCCCEEEEeecCCCeE
Confidence            34445778999999774321                       0112222 2367789999999999999888876 999


Q ss_pred             EEEECC--CCc--eeeecCCCCCCeEEEEEccCCCEEEEEeC-CCeEEEEcCCCCc--ceeeeccCCCCCeEEEEEcCCC
Q 047260          532 VLWNMD--TLQ--TESTPEDHKSVVTDVRFRPNSSQLATASV-DKSVRLWDAANPN--FCSQAYTGHSSPIMSLDFHPKK  604 (784)
Q Consensus       532 ~IWd~~--t~~--~~~~l~~h~~~It~i~fspdg~~Latgs~-Dg~I~IWdl~~~~--~~~~~~~~h~~~V~sl~~sp~~  604 (784)
                      .+|+++  +++  .+..+..+. .+.+++|+|++++|++++. ++.|.+||+.++.  .....+. ....+.+++|+|++
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg  140 (343)
T 1ri6_A           63 LAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE-GLDGCHSANISPDN  140 (343)
T ss_dssp             EEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC-CCTTBCCCEECTTS
T ss_pred             EEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc-CCCCceEEEECCCC
Confidence            999997  444  334444433 7899999999998877765 8899999995222  1233333 33468999999999


Q ss_pred             CcEEEEEeCCCeEEEEeCCC-CeeEEe----e----cCCeeEEEEecCCCEEEEEE-CCCcEEEEECCC--CeE--EEEE
Q 047260          605 TDLFCFCDNDNEIQYWSINP-FLCTHI----T----KGGTAQVRFQPRIGQLLAAA-SDKVVSIFDIET--DRQ--THSL  670 (784)
Q Consensus       605 ~~ll~sgs~dg~I~iwDl~~-~~~~~~----~----~~~v~~v~fsp~~~~Ll~~s-~Dg~I~IwDl~t--~~~--i~~l  670 (784)
                      ..+++++..++.|++||+.+ .+....    .    ...+..++|+|++.++++++ .++.|.+||+..  ++.  ...+
T Consensus       141 ~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~  220 (343)
T 1ri6_A          141 RTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTL  220 (343)
T ss_dssp             SEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEE
T ss_pred             CEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeec
Confidence            87777665899999999986 443211    1    13677899999999887776 689999999953  332  2333


Q ss_pred             eC---C---CCCEEEEEEcCCCCEEEEEe--CCeEEEEeCC--C--CceEEEeccCCCceEEEEEecCCCEEEEEE-CCC
Q 047260          671 QG---H---AELVNYICWDTNGDYLASVS--QNLVKVWSMA--S--GECIQELSSNGNQFHSCVFHPSYSTLLVVG-GIS  737 (784)
Q Consensus       671 ~~---h---~~~V~sl~~spdg~~Lasgs--dd~I~IwDl~--t--~~~i~~l~~~~~~I~sl~fspdg~~L~s~s-~dg  737 (784)
                      ..   .   ...+..++|+|+|++|+++.  ++.|.+||+.  +  .+.+..+..+.. +..++|+|++++|++++ .++
T Consensus       221 ~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~  299 (343)
T 1ri6_A          221 DMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSH  299 (343)
T ss_dssp             ECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTC
T ss_pred             cccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCC
Confidence            21   1   23677899999999887555  4499999998  3  345555555544 88999999999998888 578


Q ss_pred             eEEEEEC--CCCceEEe--cccCCceEEEEEeCCCC
Q 047260          738 SLELWNM--AENKSMTI--AAHENIISALAQSPVTG  769 (784)
Q Consensus       738 ~I~Iwdl--~~~~~~~~--~~h~~~V~slafspdg~  769 (784)
                      .|.+|++  .+++...+  ........+++|.++.+
T Consensus       300 ~v~v~~~d~~~g~~~~~~~~~~g~~p~~i~~~~~~~  335 (343)
T 1ri6_A          300 HISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNAHEG  335 (343)
T ss_dssp             EEEEEEEETTTTEEEEEEEEECSSSCCEEEEEEEC-
T ss_pred             eEEEEEEcCCCceeeEccccccCCCCeeEEEEcccC
Confidence            9999954  45543322  22234567788887654

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.90  E-value=1.2e-21  Score=209.51  Aligned_cols=260  Identities=8%  Similarity=0.064  Sum_probs=201.9

Q ss_pred             CEEEEEeCCCeEEEEECCCCceeeecCCCCC--CeEEEEEccCCCEEE-EEeCCCeEEEEcCCCCcceeeeccCC----C
Q 047260          520 KLLASSGHDRKVVLWNMDTLQTESTPEDHKS--VVTDVRFRPNSSQLA-TASVDKSVRLWDAANPNFCSQAYTGH----S  592 (784)
Q Consensus       520 ~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~--~It~i~fspdg~~La-tgs~Dg~I~IWdl~~~~~~~~~~~~h----~  592 (784)
                      ++|++++.++.|.+||+.+++.+..+.....  .+.+++|+|++++++ +++.++.|.+||+.+++.......++    .
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~   81 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence            4789999999999999999988887753322  588999999998765 55567899999998876433222222    1


Q ss_pred             CCeEEEEEcCCCCcEEEEEe-----------CCCeEEEEeCCCCeeEEeec--CCeeEEEEecCCCEEEEEECCCcEEEE
Q 047260          593 SPIMSLDFHPKKTDLFCFCD-----------NDNEIQYWSINPFLCTHITK--GGTAQVRFQPRIGQLLAAASDKVVSIF  659 (784)
Q Consensus       593 ~~V~sl~~sp~~~~ll~sgs-----------~dg~I~iwDl~~~~~~~~~~--~~v~~v~fsp~~~~Ll~~s~Dg~I~Iw  659 (784)
                      ..+.+++|+|++..++++..           .++.|.+||+.+.+.+..+.  ..+..++|+|++++++++  ++.|.+|
T Consensus        82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~  159 (337)
T 1pby_B           82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHVM  159 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEEE
T ss_pred             ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEEE
Confidence            25778999999986665542           47999999999877765544  457789999999988888  6899999


Q ss_pred             ECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-------------------------eEEEEeCCCCceE-EEecc
Q 047260          660 DIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-------------------------LVKVWSMASGECI-QELSS  713 (784)
Q Consensus       660 Dl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-------------------------~I~IwDl~t~~~i-~~l~~  713 (784)
                      |+.+++.+..+..+... ..+.|+|++.+|+....+                         .|.+||+.+++.. ..+..
T Consensus       160 d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~  238 (337)
T 1pby_B          160 DPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI  238 (337)
T ss_dssp             ETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEE
T ss_pred             ECCCCcEeeeeeccccC-CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCC
Confidence            99999988877654311 123789998876655422                         3689999998764 23345


Q ss_pred             CCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          714 NGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       714 ~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      +...+.+++|+|++++++++  ++.|.+||+.+++..........+.+++|+|++++|++++.|+.|++||
T Consensus       239 ~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d  307 (337)
T 1pby_B          239 MDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYD  307 (337)
T ss_dssp             CSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEE
T ss_pred             CCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcCCCcEEEEE
Confidence            55678899999999998888  6899999999988775555556789999999999999999999999996

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.89  E-value=1.7e-22  Score=241.10  Aligned_cols=273  Identities=12%  Similarity=0.145  Sum_probs=207.2

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCC---CeEEEEEccCCCEEEEEeCC---------CeEEEE
Q 047260          509 KVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKS---VVTDVRFRPNSSQLATASVD---------KSVRLW  576 (784)
Q Consensus       509 ~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~---~It~i~fspdg~~Latgs~D---------g~I~IW  576 (784)
                      .+.+++|+|||+++++ +.||.|++||+.+++....+..|..   .|.+++|+|||++|++++.+         +.|.+|
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~   96 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS   96 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence            4678899999998776 7899999999999988888877765   49999999999999999875         788899


Q ss_pred             cCCCCcce-eeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecC---C------------------
Q 047260          577 DAANPNFC-SQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKG---G------------------  634 (784)
Q Consensus       577 dl~~~~~~-~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~---~------------------  634 (784)
                      |+.+++.. +....+|...+.+++|+|++..++++.  ++.|++||+.+.........   .                  
T Consensus        97 d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~--~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~  174 (723)
T 1xfd_A           97 KIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF--ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKT  174 (723)
T ss_dssp             ESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE--TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSS
T ss_pred             ECCCCceEeccCCccccccccccEECCCCCEEEEEE--CCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccC
Confidence            99987631 222234555689999999998665544  37999999988766554432   2                  


Q ss_pred             eeEEEEecCCCEEEEEECCC----------------------------------cEEEEECCCCeEEEEEeCC------C
Q 047260          635 TAQVRFQPRIGQLLAAASDK----------------------------------VVSIFDIETDRQTHSLQGH------A  674 (784)
Q Consensus       635 v~~v~fsp~~~~Ll~~s~Dg----------------------------------~I~IwDl~t~~~i~~l~~h------~  674 (784)
                      +..+.|+|+++.|++++.++                                  .|++||+.+++....+..+      .
T Consensus       175 ~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~  254 (723)
T 1xfd_A          175 HIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMRE  254 (723)
T ss_dssp             SEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSS
T ss_pred             cceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCcc
Confidence            26899999999999887543                                  7999999988765666654      5


Q ss_pred             CCEEEEEEcCCCCEEEEEeC-----CeEEEEeCCCCceEEEecc-CCCce----EEEEEecCCCEEEEE--ECCC-----
Q 047260          675 ELVNYICWDTNGDYLASVSQ-----NLVKVWSMASGECIQELSS-NGNQF----HSCVFHPSYSTLLVV--GGIS-----  737 (784)
Q Consensus       675 ~~V~sl~~spdg~~Lasgsd-----d~I~IwDl~t~~~i~~l~~-~~~~I----~sl~fspdg~~L~s~--s~dg-----  737 (784)
                      ..+..++|+|||++|++..+     ..|++||+.++++...+.. +...+    ..++|+|+|+.|+..  ..++     
T Consensus       255 ~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~  334 (723)
T 1xfd_A          255 YYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKF  334 (723)
T ss_dssp             EEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCE
T ss_pred             ceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcce
Confidence            67899999999999877642     2799999999987766543 33333    378999999987764  4556     


Q ss_pred             -eEEEEE-CCCCc---eEEecccCCceEE-EEEeCCCCEEEEEECC---CcEEEeC
Q 047260          738 -SLELWN-MAENK---SMTIAAHENIISA-LAQSPVTGMVASASHD---SSVKLWK  784 (784)
Q Consensus       738 -~I~Iwd-l~~~~---~~~~~~h~~~V~s-lafspdg~~LaSgs~D---G~V~IWd  784 (784)
                       .|.+|| ..++.   ...+..+...+.. ++|+||++.|+..+.+   +.++||+
T Consensus       335 ~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~  390 (723)
T 1xfd_A          335 YHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYS  390 (723)
T ss_dssp             EEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEE
T ss_pred             eEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEE
Confidence             577788 45555   4455444444554 6999999999877665   7888884

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.89  E-value=7.9e-22  Score=205.65  Aligned_cols=232  Identities=13%  Similarity=0.137  Sum_probs=183.3

Q ss_pred             EeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCC-CceeeecCCC-CCCeEEEEEccCCCEEEEEe--CCCeEEEEc
Q 047260          502 CIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDT-LQTESTPEDH-KSVVTDVRFRPNSSQLATAS--VDKSVRLWD  577 (784)
Q Consensus       502 ~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t-~~~~~~l~~h-~~~It~i~fspdg~~Latgs--~Dg~I~IWd  577 (784)
                      .+..|...|.+++|+|+|++|++++ ++.|++||+.+ ++.......| ...|.+++|+|++++|++++  .++.+.||.
T Consensus        36 ~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~  114 (297)
T 2ojh_A           36 VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYL  114 (297)
T ss_dssp             EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEE
T ss_pred             eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEE
Confidence            4456889999999999999999876 88999999999 8877777666 47889999999999999998  334555555


Q ss_pred             C--CCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCC--CCeeEEe--ecCCeeEEEEecCCCEEEEEE
Q 047260          578 A--ANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSIN--PFLCTHI--TKGGTAQVRFQPRIGQLLAAA  651 (784)
Q Consensus       578 l--~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~--~~~~~~~--~~~~v~~v~fsp~~~~Ll~~s  651 (784)
                      +  .++.  ...+..+ ..+.+++|+|++..+++++..++.+++|+++  +......  ....+.++.|+|++..+++++
T Consensus       115 ~~~~~~~--~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~  191 (297)
T 2ojh_A          115 LPSTGGT--PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNS  191 (297)
T ss_dssp             EETTCCC--CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEE
T ss_pred             EECCCCc--eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEe
Confidence            4  4433  3333333 3489999999999888788889999999853  3333322  336788999999999888877


Q ss_pred             C-CCcEEEEECC-CCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeC------------CeEEEEeCCCCce--EEEeccCC
Q 047260          652 S-DKVVSIFDIE-TDRQTHSLQGHAELVNYICWDTNGDYLASVSQ------------NLVKVWSMASGEC--IQELSSNG  715 (784)
Q Consensus       652 ~-Dg~I~IwDl~-t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsd------------d~I~IwDl~t~~~--i~~l~~~~  715 (784)
                      . ++.+.+|++. .+..+..+..|...+.+++|+|+|++|++++.            ..|++||+.+++.  +..+..+.
T Consensus       192 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~  271 (297)
T 2ojh_A          192 SRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQ  271 (297)
T ss_dssp             CTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEEST
T ss_pred             cCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCC
Confidence            5 8999999986 45666777778888999999999999887763            3699999998865  44455777


Q ss_pred             CceEEEEEecCCCEEEEEECCC
Q 047260          716 NQFHSCVFHPSYSTLLVVGGIS  737 (784)
Q Consensus       716 ~~I~sl~fspdg~~L~s~s~dg  737 (784)
                      ..+.+++|+|++++|++++.+.
T Consensus       272 ~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          272 GTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             TTSCSCCBCTTSSEEEEEEECC
T ss_pred             cccccceECCCCCEEEEEEecc
Confidence            8899999999999998887764

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.89  E-value=8.2e-22  Score=229.88  Aligned_cols=267  Identities=10%  Similarity=0.026  Sum_probs=207.1

Q ss_pred             CCceEEEEEcCCCCEEEEEeC-CCeEEEEECCCCceeeecCCCC-CCeEEEEEccCCCEEEEEeC---CCeEEEEcCCC-
Q 047260          507 NSKVTCCHFSSDGKLLASSGH-DRKVVLWNMDTLQTESTPEDHK-SVVTDVRFRPNSSQLATASV---DKSVRLWDAAN-  580 (784)
Q Consensus       507 ~~~V~~l~fspdg~~Lasgs~-Dg~I~IWd~~t~~~~~~l~~h~-~~It~i~fspdg~~Latgs~---Dg~I~IWdl~~-  580 (784)
                      ..+|++++|+|||++||+++. ||++.||++++++... +..|. ..|..++|+|| +++++++.   +...+||.+.. 
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~-lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~   98 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK-LNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS   98 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE-CCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe-eecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence            557999999999999999887 9999999997666544 44454 68999999999 77777765   45566655433 


Q ss_pred             -CcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCCeeEEEEecCCCEEEEEECC----Cc
Q 047260          581 -PNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAASD----KV  655 (784)
Q Consensus       581 -~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v~~v~fsp~~~~Ll~~s~D----g~  655 (784)
                       ..... .+... ..+...+|+|+++.+++++..++.+.+||+.+++..........+++|+|+|+.|++++.+    +.
T Consensus        99 ~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~~~~~~spDG~~la~~~~~~~~~~~  176 (582)
T 3o4h_A           99 RPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVS  176 (582)
T ss_dssp             STTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEE
T ss_pred             CCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCCceEEECCCCCEEEEEEEcCCCCeE
Confidence             22122 22222 2345678999988766666666666799999887766655444889999999999988876    78


Q ss_pred             EEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CC--eEEEEeCCCCceEEEeccCCCceEEEE--------Ee
Q 047260          656 VSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVS-QN--LVKVWSMASGECIQELSSNGNQFHSCV--------FH  724 (784)
Q Consensus       656 I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgs-dd--~I~IwDl~t~~~i~~l~~~~~~I~sl~--------fs  724 (784)
                      |++||+.+++.. .+..|...+..++|+|||++|+++. ++  .|++||+.+++.. .+..+...+..++        |+
T Consensus       177 i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s  254 (582)
T 3o4h_A          177 LFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYL  254 (582)
T ss_dssp             EEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEEC
T ss_pred             EEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEc
Confidence            999999988754 6677888999999999999999665 34  7999999999887 7777777777777        99


Q ss_pred             cCCCEEEEEECCCeEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEECCCc---EEEeC
Q 047260          725 PSYSTLLVVGGISSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHDSS---VKLWK  784 (784)
Q Consensus       725 pdg~~L~s~s~dg~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs~DG~---V~IWd  784 (784)
                      ||+..+++++.++.+++|++  ++...  .+.+.|.+++|+ +++++++++.+..   |.+||
T Consensus       255 pdg~~~~~~~~~g~~~l~~~--g~~~~--~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d  312 (582)
T 3o4h_A          255 PDGRLAVVARREGRSAVFID--GERVE--APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLP  312 (582)
T ss_dssp             TTSCEEEEEEETTEEEEEET--TEEEC--CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEET
T ss_pred             CCCcEEEEEEcCCcEEEEEE--CCeec--cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEc
Confidence            99988888999999999999  55443  345779999999 9999998887744   55554

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.89  E-value=2.8e-21  Score=241.25  Aligned_cols=276  Identities=9%  Similarity=0.031  Sum_probs=215.5

Q ss_pred             EeEeecCCCce-------EEEEEcCCCCEEEEEeCC------CeEEEEECCCCceee-----------------------
Q 047260          500 VGCIRSRNSKV-------TCCHFSSDGKLLASSGHD------RKVVLWNMDTLQTES-----------------------  543 (784)
Q Consensus       500 i~~l~~H~~~V-------~~l~fspdg~~Lasgs~D------g~I~IWd~~t~~~~~-----------------------  543 (784)
                      ...+..|...+       .+++|+|||+++++++.+      ..|++|++.+++...                       
T Consensus        92 ~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~  171 (1045)
T 1k32_A           92 IKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTF  171 (1045)
T ss_dssp             EEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCS
T ss_pred             eEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCC
Confidence            34556677777       899999999977777644      357788876544221                       


Q ss_pred             --------------------------ecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEE
Q 047260          544 --------------------------TPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMS  597 (784)
Q Consensus       544 --------------------------~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~s  597 (784)
                                                .+.+|...+.++.|+++ .++++++.|+.++||++.........+..|. .+..
T Consensus       172 ~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~  249 (1045)
T 1k32_A          172 ELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYP  249 (1045)
T ss_dssp             CCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCE
T ss_pred             CccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-Ccce
Confidence                                      22356778888999887 6677788889999998764332344455554 4677


Q ss_pred             EEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecC--------------CeeEEEEe-cCCCEEEEEECCCcEEEEECC
Q 047260          598 LDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKG--------------GTAQVRFQ-PRIGQLLAAASDKVVSIFDIE  662 (784)
Q Consensus       598 l~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~--------------~v~~v~fs-p~~~~Ll~~s~Dg~I~IwDl~  662 (784)
                      ++|+|++..+++.  .++.|++||+...... .+..              .+..++|+ |++..|++++ ++.|.+|++.
T Consensus       250 ~~~SpDG~~la~~--~~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~  325 (1045)
T 1k32_A          250 RHLNTDGRRILFS--KGGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVS  325 (1045)
T ss_dssp             EEEEESSSCEEEE--ETTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTT
T ss_pred             eeEcCCCCEEEEE--eCCEEEEecCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCC
Confidence            8999999866554  4899999999554433 3333              58899999 9999988887 7899999998


Q ss_pred             CCeEEEEEeCCCC-CEEEEEEcCCCCEEEEEeCC-eEE-EEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeE
Q 047260          663 TDRQTHSLQGHAE-LVNYICWDTNGDYLASVSQN-LVK-VWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSL  739 (784)
Q Consensus       663 t~~~i~~l~~h~~-~V~sl~~spdg~~Lasgsdd-~I~-IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I  739 (784)
                      .+... .+..|.. .+..++|+ +|+.|+.++++ .|. +||+.+++.. .+..+...+..++|+|++++|++++.++.|
T Consensus       326 ~~~~~-~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~~v  402 (1045)
T 1k32_A          326 GTYVL-KVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEI  402 (1045)
T ss_dssp             SSBEE-ECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEE
T ss_pred             CCceE-EccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-EecCCccceeeeEECCCCCEEEEECCCCeE
Confidence            87654 3566777 89999999 99999988876 888 9999887654 444777889999999999999999999999


Q ss_pred             EEEECCCCceEEec-ccCCceEEEEEeCCCCEEEEEECCC----------cEEEeC
Q 047260          740 ELWNMAENKSMTIA-AHENIISALAQSPVTGMVASASHDS----------SVKLWK  784 (784)
Q Consensus       740 ~Iwdl~~~~~~~~~-~h~~~V~slafspdg~~LaSgs~DG----------~V~IWd  784 (784)
                      ++||+.+++...+. .|.+.|.+++|+|||++|++++.++          .|++||
T Consensus       403 ~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d  458 (1045)
T 1k32_A          403 MTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYD  458 (1045)
T ss_dssp             EEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEE
T ss_pred             EEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEE
Confidence            99999999887555 8999999999999999999887654          899996

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.89  E-value=2.5e-21  Score=241.64  Aligned_cols=277  Identities=8%  Similarity=0.011  Sum_probs=225.9

Q ss_pred             EEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCC-CceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEc
Q 047260          499 EVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDT-LQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWD  577 (784)
Q Consensus       499 ~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t-~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWd  577 (784)
                      +...+.+|...|.++.|+++ .++++++.|+.+.||.++. +.....+..|. .+..++|+|+|++|+++ .++.|.+||
T Consensus       195 ~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d  271 (1045)
T 1k32_A          195 AFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFN  271 (1045)
T ss_dssp             EEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEEC
T ss_pred             CeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEec
Confidence            34556889999999999988 6777888889999998753 44455565555 46778999999999888 489999999


Q ss_pred             CCCCcceeeeccC-----------CCCCeEEEEEc-CCCCcEEEEEeCCCeEEEEeCCCCeeEEee--cC-CeeEEEEec
Q 047260          578 AANPNFCSQAYTG-----------HSSPIMSLDFH-PKKTDLFCFCDNDNEIQYWSINPFLCTHIT--KG-GTAQVRFQP  642 (784)
Q Consensus       578 l~~~~~~~~~~~~-----------h~~~V~sl~~s-p~~~~ll~sgs~dg~I~iwDl~~~~~~~~~--~~-~v~~v~fsp  642 (784)
                      +.... .. .+..           |...+.+++|+ |++..+++++  ++.|++|++.........  .. .+..++|+ 
T Consensus       272 ~~~~~-l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-  346 (1045)
T 1k32_A          272 PDTEK-IE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS--RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-  346 (1045)
T ss_dssp             TTTCC-EE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE--TTEEEEECTTSSBEEECSCCSCEEEEEECSS-
T ss_pred             CCceE-ee-eeccCcccccccccccccccceeeecCCCCCEEEEEE--cCEEEEEcCCCCceEEccCCCcceEEeeeEc-
Confidence            95433 22 3333           33468999999 9998666554  889999999876654432  23 57788999 


Q ss_pred             CCCEEEEEECCCcEE-EEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEE
Q 047260          643 RIGQLLAAASDKVVS-IFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHS  720 (784)
Q Consensus       643 ~~~~Ll~~s~Dg~I~-IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~s  720 (784)
                      ++..|++++.++.|. +||+..++... +.+|...+..++|+|||++|++++.+ .|++||+.+++....+..|...+.+
T Consensus       347 dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~  425 (1045)
T 1k32_A          347 TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITD  425 (1045)
T ss_dssp             SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCC
T ss_pred             CCCeEEEEECCCceEEEEECCCCCceE-ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccc
Confidence            999999998888888 99998776544 44788899999999999999998866 9999999999988887788888999


Q ss_pred             EEEecCCCEEEEEECCC----------eEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          721 CVFHPSYSTLLVVGGIS----------SLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       721 l~fspdg~~L~s~s~dg----------~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      ++|+|++++|++++.++          .|++||+.+++...+..|...+.+++|+|||++|++++.++.+.+|+
T Consensus       426 ~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~  499 (1045)
T 1k32_A          426 FTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPD  499 (1045)
T ss_dssp             EEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEEC
T ss_pred             eEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcc
Confidence            99999999998887644          89999999988778888999999999999999999999988877774

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.88  E-value=3.8e-21  Score=229.44  Aligned_cols=304  Identities=11%  Similarity=0.055  Sum_probs=211.5

Q ss_pred             cccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCC---ceEEEEEcCC
Q 047260          442 SASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNS---KVTCCHFSSD  518 (784)
Q Consensus       442 ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~---~V~~l~fspd  518 (784)
                      ....+.++.. ++.+ +.|+++.+|+...+.                          ....+.+|..   .|.+++||||
T Consensus        20 ~~~~~spdg~-~~~~-~~dg~i~~~d~~~g~--------------------------~~~~~~~~~~~~~~v~~~~~SpD   71 (723)
T 1xfd_A           20 PEAKWISDTE-FIYR-EQKGTVRLWNVETNT--------------------------STVLIEGKKIESLRAIRYEISPD   71 (723)
T ss_dssp             CCCCBSSSSC-BCCC-CSSSCEEEBCGGGCC--------------------------CEEEECTTTTTTTTCSEEEECTT
T ss_pred             cccEEcCCCc-EEEE-eCCCCEEEEECCCCc--------------------------EEEEeccccccccccceEEECCC
Confidence            3445556665 4443 678889888764432                          1122333443   4999999999


Q ss_pred             CCEEEEEeCC---------CeEEEEECCCCce--eeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeee
Q 047260          519 GKLLASSGHD---------RKVVLWNMDTLQT--ESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQA  587 (784)
Q Consensus       519 g~~Lasgs~D---------g~I~IWd~~t~~~--~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~  587 (784)
                      |++|++++.+         +.|++||+.+++.  +.....|...+.+++|+|||+.|++++. +.|++||+.+++. ...
T Consensus        72 g~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~-~~~  149 (723)
T 1xfd_A           72 REYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQA-IRV  149 (723)
T ss_dssp             SSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCC-EEE
T ss_pred             CCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCce-EEE
Confidence            9999999764         7888999998876  2222345556899999999999999886 7999999988663 333


Q ss_pred             ccCCCCC------------------eEEEEEcCCCCcEEEEEeCC---------------------------------Ce
Q 047260          588 YTGHSSP------------------IMSLDFHPKKTDLFCFCDND---------------------------------NE  616 (784)
Q Consensus       588 ~~~h~~~------------------V~sl~~sp~~~~ll~sgs~d---------------------------------g~  616 (784)
                      ...+...                  +.+++|+|++..++++...+                                 ..
T Consensus       150 ~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~  229 (723)
T 1xfd_A          150 VSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSIS  229 (723)
T ss_dssp             ECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEE
T ss_pred             ecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeE
Confidence            3333332                  37899999998666655332                                 27


Q ss_pred             EEEEeCCCCeeEEeec---------CCeeEEEEecCCCEEEEEEC----CCcEEEEECCCCeEEEEEeC-CCCCE----E
Q 047260          617 IQYWSINPFLCTHITK---------GGTAQVRFQPRIGQLLAAAS----DKVVSIFDIETDRQTHSLQG-HAELV----N  678 (784)
Q Consensus       617 I~iwDl~~~~~~~~~~---------~~v~~v~fsp~~~~Ll~~s~----Dg~I~IwDl~t~~~i~~l~~-h~~~V----~  678 (784)
                      |++||+.+.++...+.         ..+..++|+|+++.+++...    +..|++||+.+++....+.. +...+    .
T Consensus       230 l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~  309 (723)
T 1xfd_A          230 LHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNE  309 (723)
T ss_dssp             EEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCC
T ss_pred             EEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCC
Confidence            9999998776433332         34678999999998866653    35799999999887766543 33433    3


Q ss_pred             EEEEcCCCCEEEEE-e--CC------eEEEEe-CCCCc--eEEEeccCCCceEE-EEEecCCCEEEEEECC---CeEEEE
Q 047260          679 YICWDTNGDYLASV-S--QN------LVKVWS-MASGE--CIQELSSNGNQFHS-CVFHPSYSTLLVVGGI---SSLELW  742 (784)
Q Consensus       679 sl~~spdg~~Lasg-s--dd------~I~IwD-l~t~~--~i~~l~~~~~~I~s-l~fspdg~~L~s~s~d---g~I~Iw  742 (784)
                      .++|+|||+.|+.. +  ++      .|.+|| ...+.  ++..+..+...+.. ++|+|+++.|++.+.+   +.++||
T Consensus       310 ~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~  389 (723)
T 1xfd_A          310 EPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLY  389 (723)
T ss_dssp             CCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEE
T ss_pred             CceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEE
Confidence            78999999977654 3  33      477788 34444  14555544444554 6899999999877765   789999


Q ss_pred             ECCCCc---eEEecc---cCCceEEEEEeCCCCEEEEEE
Q 047260          743 NMAENK---SMTIAA---HENIISALAQSPVTGMVASAS  775 (784)
Q Consensus       743 dl~~~~---~~~~~~---h~~~V~slafspdg~~LaSgs  775 (784)
                      ++....   ...+..   |...+..++|+||+++|+...
T Consensus       390 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~  428 (723)
T 1xfd_A          390 SANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKC  428 (723)
T ss_dssp             EECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEEC
T ss_pred             EEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEc
Confidence            886432   223333   677789999999999877653

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.88  E-value=5.5e-21  Score=227.70  Aligned_cols=273  Identities=11%  Similarity=0.118  Sum_probs=205.0

Q ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCC-----
Q 047260          506 RNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAAN-----  580 (784)
Q Consensus       506 H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~-----  580 (784)
                      +...|.+++|+|| ++++.+. ++.|++||+.+++.... ..+...+.+++|+|||++|+++ .|+.|++||+.+     
T Consensus        80 ~~~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~l-~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~  155 (706)
T 2z3z_A           80 DAFPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTYL-FDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGM  155 (706)
T ss_dssp             --CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEEE-ECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCC
T ss_pred             cccCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEEc-cCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccC
Confidence            3467999999999 6666554 69999999998776544 4567789999999999999995 689999999987     


Q ss_pred             CcceeeeccCCCCC--------------eEEEEEcCCCCcEEEEEe--------------------------------CC
Q 047260          581 PNFCSQAYTGHSSP--------------IMSLDFHPKKTDLFCFCD--------------------------------ND  614 (784)
Q Consensus       581 ~~~~~~~~~~h~~~--------------V~sl~~sp~~~~ll~sgs--------------------------------~d  614 (784)
                      ++ .......+...              +.++.|+|++..+++++.                                .+
T Consensus       156 g~-~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~  234 (706)
T 2z3z_A          156 SR-AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHH  234 (706)
T ss_dssp             CC-CEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCE
T ss_pred             CC-cEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCe
Confidence            65 33333333232              489999999986665541                                34


Q ss_pred             CeEEEEeCCCCeeEEeec-----CCeeEEEEecCCCEEEEEECCC-----cEEEEECCCCeEEEEEe-C-CCC---CEEE
Q 047260          615 NEIQYWSINPFLCTHITK-----GGTAQVRFQPRIGQLLAAASDK-----VVSIFDIETDRQTHSLQ-G-HAE---LVNY  679 (784)
Q Consensus       615 g~I~iwDl~~~~~~~~~~-----~~v~~v~fsp~~~~Ll~~s~Dg-----~I~IwDl~t~~~i~~l~-~-h~~---~V~s  679 (784)
                      ..|++||+.+.+......     ..+..++|+|+++.|++++.++     .|++||+.+++....+. . +..   .+.+
T Consensus       235 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~  314 (706)
T 2z3z_A          235 VTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHP  314 (706)
T ss_dssp             EEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSC
T ss_pred             eEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCC
Confidence            679999999877655442     3478899999999999988765     89999999984333332 2 222   2467


Q ss_pred             EEEcC--CCCEEEEEeCC-eEEEEeCC-CCceEEEeccCCCceEE-EEEecCCCEEEEEECC-C----eEEEEECCCCce
Q 047260          680 ICWDT--NGDYLASVSQN-LVKVWSMA-SGECIQELSSNGNQFHS-CVFHPSYSTLLVVGGI-S----SLELWNMAENKS  749 (784)
Q Consensus       680 l~~sp--dg~~Lasgsdd-~I~IwDl~-t~~~i~~l~~~~~~I~s-l~fspdg~~L~s~s~d-g----~I~Iwdl~~~~~  749 (784)
                      ++|+|  +|++|++++.+ .++||++. ++..+..+..+...+.. ++|+|+++.|++++.+ +    .|..||+.+++.
T Consensus       315 ~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~  394 (706)
T 2z3z_A          315 LTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKT  394 (706)
T ss_dssp             CEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCC
T ss_pred             ceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCc
Confidence            89999  99998888754 78888776 66778888877777776 7999999988777665 3    677778877764


Q ss_pred             EEecccCCceEEEEEeCCCCEEEEEECC----CcEEEeC
Q 047260          750 MTIAAHENIISALAQSPVTGMVASASHD----SSVKLWK  784 (784)
Q Consensus       750 ~~~~~h~~~V~slafspdg~~LaSgs~D----G~V~IWd  784 (784)
                      ..+ .|...+.+++|+||+++|+..+.+    +.|++||
T Consensus       395 ~~l-~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d  432 (706)
T 2z3z_A          395 KDL-TPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTN  432 (706)
T ss_dssp             EES-CCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEE
T ss_pred             eec-cCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEE
Confidence            444 477789999999999988876544    4588885

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.87  E-value=1e-20  Score=202.18  Aligned_cols=266  Identities=11%  Similarity=0.111  Sum_probs=202.1

Q ss_pred             ceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEee-cCCC-ceEEEEEcCCCCEEE-EEeCC
Q 047260          452 RFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIR-SRNS-KVTCCHFSSDGKLLA-SSGHD  528 (784)
Q Consensus       452 ~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~-~H~~-~V~~l~fspdg~~La-sgs~D  528 (784)
                      .++.+++.++.|.+|+....                          ..+..+. ++.. .+.+++|+|+|++|+ ++..+
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~--------------------------~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~   55 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKM--------------------------AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKS   55 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTT--------------------------EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTT
T ss_pred             cEEEEcCCCCeEEEEECCCC--------------------------cEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCC
Confidence            35567888999999865321                          1222222 1222 478899999998664 55567


Q ss_pred             CeEEEEECCCCceeeecCC-C----CCCeEEEEEccCCCEEEEEe------------CCCeEEEEcCCCCcceeeeccCC
Q 047260          529 RKVVLWNMDTLQTESTPED-H----KSVVTDVRFRPNSSQLATAS------------VDKSVRLWDAANPNFCSQAYTGH  591 (784)
Q Consensus       529 g~I~IWd~~t~~~~~~l~~-h----~~~It~i~fspdg~~Latgs------------~Dg~I~IWdl~~~~~~~~~~~~h  591 (784)
                      +.|.+||+.+++.+..+.. +    ...+.+++|+|++++|++++            .++.|.+||+.+++ ....+.. 
T Consensus        56 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~-  133 (337)
T 1pby_B           56 ESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS-RRKAFEA-  133 (337)
T ss_dssp             TEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE-EEEEEEC-
T ss_pred             CeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCc-EEEEEeC-
Confidence            8999999999988776642 1    22678899999999999886            57999999998766 3333333 


Q ss_pred             CCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCCe--eEEEEecCCCEEEEEECC-C--------------
Q 047260          592 SSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGT--AQVRFQPRIGQLLAAASD-K--------------  654 (784)
Q Consensus       592 ~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v--~~v~fsp~~~~Ll~~s~D-g--------------  654 (784)
                      ...+.+++|+|++..++++   ++.|++||+.+.+....+....  ..+.|+|++..+++.+.+ +              
T Consensus       134 ~~~~~~~~~s~dg~~l~~~---~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~  210 (337)
T 1pby_B          134 PRQITMLAWARDGSKLYGL---GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDID  210 (337)
T ss_dssp             CSSCCCEEECTTSSCEEEE---SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSC
T ss_pred             CCCcceeEECCCCCEEEEe---CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccc
Confidence            4567889999999866665   6899999999888776654322  345788888877665543 2              


Q ss_pred             ---------cEEEEECCCCeEE-EEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEEEeccCCCceEEEEEe
Q 047260          655 ---------VVSIFDIETDRQT-HSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFH  724 (784)
Q Consensus       655 ---------~I~IwDl~t~~~i-~~l~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~~l~~~~~~I~sl~fs  724 (784)
                               .|.+||+.+++.. ..+..+...+.+++|+|++++|+++ ++.|.+||+.+++.+..+..+ ..+.+++|+
T Consensus       211 ~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s  288 (337)
T 1pby_B          211 PADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVPLP-HSYYSVNVS  288 (337)
T ss_dssp             TTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEECS-SCCCEEEEC
T ss_pred             cccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe-CCeEEEEECCCCcCcceecCC-CceeeEEEC
Confidence                     4689999998764 2344566788999999999999888 679999999999988877644 567899999


Q ss_pred             cCCCEEEEEECCCeEEEEECCCCceE
Q 047260          725 PSYSTLLVVGGISSLELWNMAENKSM  750 (784)
Q Consensus       725 pdg~~L~s~s~dg~I~Iwdl~~~~~~  750 (784)
                      |++++|++++.++.|.+||+.+++.+
T Consensus       289 ~dg~~l~~~~~~~~i~v~d~~~~~~~  314 (337)
T 1pby_B          289 TDGSTVWLGGALGDLAAYDAETLEKK  314 (337)
T ss_dssp             TTSCEEEEESBSSEEEEEETTTCCEE
T ss_pred             CCCCEEEEEcCCCcEEEEECcCCcEE
Confidence            99999999988999999999998876

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.86  E-value=4.8e-20  Score=219.56  Aligned_cols=243  Identities=13%  Similarity=0.147  Sum_probs=183.9

Q ss_pred             eecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCC-----CceeeecCCCCCC--------------eEEEEEccCCCE
Q 047260          503 IRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDT-----LQTESTPEDHKSV--------------VTDVRFRPNSSQ  563 (784)
Q Consensus       503 l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t-----~~~~~~l~~h~~~--------------It~i~fspdg~~  563 (784)
                      +..+...+.+++|||||++||++ .|+.|++||+.+     ++.......+...              +.++.|+|||++
T Consensus       116 l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~  194 (706)
T 2z3z_A          116 LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSC  194 (706)
T ss_dssp             EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSE
T ss_pred             ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCE
Confidence            44567778999999999999985 689999999998     7776655444443              489999999999


Q ss_pred             EEEEe---------------------------------CCCeEEEEcCCCCcceeeec-cCCCCCeEEEEEcCCCCcEEE
Q 047260          564 LATAS---------------------------------VDKSVRLWDAANPNFCSQAY-TGHSSPIMSLDFHPKKTDLFC  609 (784)
Q Consensus       564 Latgs---------------------------------~Dg~I~IWdl~~~~~~~~~~-~~h~~~V~sl~~sp~~~~ll~  609 (784)
                      |++++                                 .+..|++||+.+++...... ..|...+.+++|+|++..+++
T Consensus       195 la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~  274 (706)
T 2z3z_A          195 LAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYV  274 (706)
T ss_dssp             EEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEE
T ss_pred             EEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEE
Confidence            99998                                 44679999998866322221 246678999999999986655


Q ss_pred             EEeCC----CeEEEEeCCCC-eeEEee--cC-----CeeEEEEec--CCCEEEEEECCCcEEEEECC-CCeEEEEEeCCC
Q 047260          610 FCDND----NEIQYWSINPF-LCTHIT--KG-----GTAQVRFQP--RIGQLLAAASDKVVSIFDIE-TDRQTHSLQGHA  674 (784)
Q Consensus       610 sgs~d----g~I~iwDl~~~-~~~~~~--~~-----~v~~v~fsp--~~~~Ll~~s~Dg~I~IwDl~-t~~~i~~l~~h~  674 (784)
                      ++...    ..|++||+.++ ......  ..     .+..+.|+|  ++++++++..|+.++||++. +++.+..+..+.
T Consensus       275 ~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~  354 (706)
T 2z3z_A          275 AEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGE  354 (706)
T ss_dssp             EEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSS
T ss_pred             EEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCC
Confidence            44322    38999999987 333222  11     235689999  99988888889999999886 667777887787


Q ss_pred             CCEEE-EEEcCCCCEEEEEe-C-C----eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECC----CeEEEEE
Q 047260          675 ELVNY-ICWDTNGDYLASVS-Q-N----LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGI----SSLELWN  743 (784)
Q Consensus       675 ~~V~s-l~~spdg~~Lasgs-d-d----~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~d----g~I~Iwd  743 (784)
                      ..+.. ++|+|+++.|+.++ + +    .|..||+.+++ +..+. +...+.+++|+|++++|++...+    +.|++||
T Consensus       355 ~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d  432 (706)
T 2z3z_A          355 WEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTN  432 (706)
T ss_dssp             SCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEE
T ss_pred             eEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEE
Confidence            77876 79999999876655 2 2    67777877765 33443 56678999999999988877554    4699999


Q ss_pred             CCCCc
Q 047260          744 MAENK  748 (784)
Q Consensus       744 l~~~~  748 (784)
                      +.+++
T Consensus       433 ~~~~~  437 (706)
T 2z3z_A          433 IGKGS  437 (706)
T ss_dssp             SSSCE
T ss_pred             CCCCe
Confidence            98886

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.85  E-value=1.3e-18  Score=189.55  Aligned_cols=257  Identities=15%  Similarity=0.137  Sum_probs=187.5

Q ss_pred             CCCceEEEEEcCCCCEEEEEeCC----CeEEEEECCC--Cc--eeeecCCCCCCeEEEEEccCCCEEEEEe-CCCeEEEE
Q 047260          506 RNSKVTCCHFSSDGKLLASSGHD----RKVVLWNMDT--LQ--TESTPEDHKSVVTDVRFRPNSSQLATAS-VDKSVRLW  576 (784)
Q Consensus       506 H~~~V~~l~fspdg~~Lasgs~D----g~I~IWd~~t--~~--~~~~l~~h~~~It~i~fspdg~~Latgs-~Dg~I~IW  576 (784)
                      |...+..++|+|||++|++++.+    +.|.+|+++.  ++  .+.....+......+++  ++++|++++ .++.|.+|
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~  125 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF  125 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence            67778889999999999998876    7999998865  43  33344445667788888  788887776 57899999


Q ss_pred             cCCCCcceeee-----cc--------CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCee--------------EE
Q 047260          577 DAANPNFCSQA-----YT--------GHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLC--------------TH  629 (784)
Q Consensus       577 dl~~~~~~~~~-----~~--------~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~--------------~~  629 (784)
                      ++.........     ..        .+...+.+++|+|++..+++++..++.|.+|+++....              ..
T Consensus       126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~  205 (361)
T 3scy_A          126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF  205 (361)
T ss_dssp             EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred             EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence            99754322111     11        12234688999999998888877799999998874321              11


Q ss_pred             ee--cCCeeEEEEecCCCEEEEEE-CCCcEEEEECCCCeE--EEEEe---CCCCCEEEEEEcCCCCEEEEEe-C--CeEE
Q 047260          630 IT--KGGTAQVRFQPRIGQLLAAA-SDKVVSIFDIETDRQ--THSLQ---GHAELVNYICWDTNGDYLASVS-Q--NLVK  698 (784)
Q Consensus       630 ~~--~~~v~~v~fsp~~~~Ll~~s-~Dg~I~IwDl~t~~~--i~~l~---~h~~~V~sl~~spdg~~Lasgs-d--d~I~  698 (784)
                      ..  ......++|+|+++++++++ .++.|.+||+.+++.  +..+.   .+......++|+|||++|+++. +  +.|.
T Consensus       206 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~  285 (361)
T 3scy_A          206 KVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVA  285 (361)
T ss_dssp             ECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEE
T ss_pred             ecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEE
Confidence            11  24567899999999998888 489999999987754  33332   2345678999999999886655 4  4899


Q ss_pred             EEeCC--CCc--eEEEeccCCCceEEEEEecCCCEEEEEE-CCCeEEEEE--CCCCceEEec--ccCCceEEEEEe
Q 047260          699 VWSMA--SGE--CIQELSSNGNQFHSCVFHPSYSTLLVVG-GISSLELWN--MAENKSMTIA--AHENIISALAQS  765 (784)
Q Consensus       699 IwDl~--t~~--~i~~l~~~~~~I~sl~fspdg~~L~s~s-~dg~I~Iwd--l~~~~~~~~~--~h~~~V~slafs  765 (784)
                      ||++.  +++  .+..+.. ...+..++|+|++++|++++ .++.|.+|+  ..+++...+.  .+...+.||+|.
T Consensus       286 v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          286 IFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV  360 (361)
T ss_dssp             EEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred             EEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence            99996  444  4555554 56788999999999999888 568899964  5566665443  345678999886

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.85  E-value=5.8e-20  Score=201.56  Aligned_cols=283  Identities=14%  Similarity=0.101  Sum_probs=202.9

Q ss_pred             EEeEeecCCCceEE-----EEEcCCCCEEEEEeC-CC--eEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCC
Q 047260          499 EVGCIRSRNSKVTC-----CHFSSDGKLLASSGH-DR--KVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVD  570 (784)
Q Consensus       499 ~i~~l~~H~~~V~~-----l~fspdg~~Lasgs~-Dg--~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~D  570 (784)
                      ++..+..|...+..     .+|+|||++|+.++. ++  .|.+||+.+++.......+...+..+.|+||++.|++++.+
T Consensus        22 ~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~  101 (388)
T 3pe7_A           22 QVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDG  101 (388)
T ss_dssp             EEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETT
T ss_pred             ceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCC
Confidence            34455566665655     889999999998887 66  48889999988887777777777678999999999999999


Q ss_pred             CeEEEEcCCCCcceeeeccCCCCCeEEEE--EcCCCCcEEEEE---------------------eCCCeEEEEeCCCCee
Q 047260          571 KSVRLWDAANPNFCSQAYTGHSSPIMSLD--FHPKKTDLFCFC---------------------DNDNEIQYWSINPFLC  627 (784)
Q Consensus       571 g~I~IWdl~~~~~~~~~~~~h~~~V~sl~--~sp~~~~ll~sg---------------------s~dg~I~iwDl~~~~~  627 (784)
                      +.|++||+.+++ ....+..+...+....  +++++..+++..                     ..+..|++||+.+++.
T Consensus       102 ~~l~~~d~~~g~-~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~  180 (388)
T 3pe7_A          102 RNLMRVDLATLE-ENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES  180 (388)
T ss_dssp             TEEEEEETTTCC-EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE
T ss_pred             CeEEEEECCCCc-ceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce
Confidence            999999999876 3344444555454444  478887554322                     2346899999987665


Q ss_pred             EEee--cCCeeEEEEec-CCCEEEEEECC------CcEEEEECCCCeEEEEEeCCC--CCEEEEEEcCCCCEEEEEe--C
Q 047260          628 THIT--KGGTAQVRFQP-RIGQLLAAASD------KVVSIFDIETDRQTHSLQGHA--ELVNYICWDTNGDYLASVS--Q  694 (784)
Q Consensus       628 ~~~~--~~~v~~v~fsp-~~~~Ll~~s~D------g~I~IwDl~t~~~i~~l~~h~--~~V~sl~~spdg~~Lasgs--d  694 (784)
                      ....  ...+..+.|+| +++.|+.+..+      ..|.++|+..+.. ..+..+.  ..+..++|+|||+.|+..+  +
T Consensus       181 ~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~  259 (388)
T 3pe7_A          181 TVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYVSYLK  259 (388)
T ss_dssp             EEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEEEEET
T ss_pred             EEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEEEEEecCC
Confidence            4443  35678899999 99988877763      3788888876543 3344343  3578899999999776544  2


Q ss_pred             C----eEEEEeCCCCceE--EEeccCCC---ceEEEEEecCCCEEEEE---------ECCCeEEEEECCCCceEEecccC
Q 047260          695 N----LVKVWSMASGECI--QELSSNGN---QFHSCVFHPSYSTLLVV---------GGISSLELWNMAENKSMTIAAHE  756 (784)
Q Consensus       695 d----~I~IwDl~t~~~i--~~l~~~~~---~I~sl~fspdg~~L~s~---------s~dg~I~Iwdl~~~~~~~~~~h~  756 (784)
                      +    .|++||+.+++..  ..+..+..   ....+.|+|+|+.|++.         ..+..|++||+.+++...+..|.
T Consensus       260 ~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~  339 (388)
T 3pe7_A          260 GSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHD  339 (388)
T ss_dssp             TCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEECC
T ss_pred             CCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEecccc
Confidence            2    3999999998743  33332100   01223799999988765         34568999999998887777776


Q ss_pred             C-----------ceEEEEEeCCCCEEEEEE-CCCcEEEe
Q 047260          757 N-----------IISALAQSPVTGMVASAS-HDSSVKLW  783 (784)
Q Consensus       757 ~-----------~V~slafspdg~~LaSgs-~DG~V~IW  783 (784)
                      .           .+.+++|+|||+.|+.++ .+|...||
T Consensus       340 ~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~  378 (388)
T 3pe7_A          340 TSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALY  378 (388)
T ss_dssp             CCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEE
T ss_pred             CcccccccccccCCCCccCCCCCCEEEEEecCCCceeEE
Confidence            6           688899999999887766 47777777

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.85  E-value=3.4e-19  Score=192.98  Aligned_cols=254  Identities=9%  Similarity=0.142  Sum_probs=178.9

Q ss_pred             CCeEEEEECC--CCceee-ecCCCCCCeEEEEEccCCCEEEEEeC---CCeEEEEcCCCCcc-eeeeccCCCCCeEEEEE
Q 047260          528 DRKVVLWNMD--TLQTES-TPEDHKSVVTDVRFRPNSSQLATASV---DKSVRLWDAANPNF-CSQAYTGHSSPIMSLDF  600 (784)
Q Consensus       528 Dg~I~IWd~~--t~~~~~-~l~~h~~~It~i~fspdg~~Latgs~---Dg~I~IWdl~~~~~-~~~~~~~h~~~V~sl~~  600 (784)
                      ++.|.+|+++  +++... ....+...+..++|+|+++ |++++.   ++.|.+||+.++.. ....+..+...+..++|
T Consensus        15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~   93 (347)
T 3hfq_A           15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAV   93 (347)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEE
T ss_pred             CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEE
Confidence            4557777654  455433 2234557788899999999 665554   68999999976542 22333446677899999


Q ss_pred             cCCCCcEEEEEeCCCeEEEEeCCC---CeeEEeec------------CCeeEEEEecCCCEEEEEE-CCCcEEEEECC-C
Q 047260          601 HPKKTDLFCFCDNDNEIQYWSINP---FLCTHITK------------GGTAQVRFQPRIGQLLAAA-SDKVVSIFDIE-T  663 (784)
Q Consensus       601 sp~~~~ll~sgs~dg~I~iwDl~~---~~~~~~~~------------~~v~~v~fsp~~~~Ll~~s-~Dg~I~IwDl~-t  663 (784)
                      +|++..+++++..++.|.+|++..   ...+....            ..+.+++|+|+++ ++++. .++.|.+||+. +
T Consensus        94 spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~  172 (347)
T 3hfq_A           94 DEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDA  172 (347)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTT
T ss_pred             CCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCC
Confidence            999997777666889999999962   23333222            1367899999999 55554 47899999998 4


Q ss_pred             CeEE--EEEeCC-CCCEEEEEEcCCCCEEEEEe--CCeEEEEeCCC--Cce--EEEeccCC------CceEEEEEecCCC
Q 047260          664 DRQT--HSLQGH-AELVNYICWDTNGDYLASVS--QNLVKVWSMAS--GEC--IQELSSNG------NQFHSCVFHPSYS  728 (784)
Q Consensus       664 ~~~i--~~l~~h-~~~V~sl~~spdg~~Lasgs--dd~I~IwDl~t--~~~--i~~l~~~~------~~I~sl~fspdg~  728 (784)
                      ++..  ..+..+ ...+..++|+|+|++|++++  ++.|.+|++..  ++.  +..+....      ..+..++|+|+++
T Consensus       173 g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~  252 (347)
T 3hfq_A          173 GQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGH  252 (347)
T ss_dssp             SCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSC
T ss_pred             CcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCC
Confidence            5432  222332 33678899999999777765  34999999874  543  33333222      4578899999999


Q ss_pred             EEEEE-ECCCeEEEEECCCC---ceE-EecccCCceEEEEEeCCCCEEEEEECC-CcEEEe
Q 047260          729 TLLVV-GGISSLELWNMAEN---KSM-TIAAHENIISALAQSPVTGMVASASHD-SSVKLW  783 (784)
Q Consensus       729 ~L~s~-s~dg~I~Iwdl~~~---~~~-~~~~h~~~V~slafspdg~~LaSgs~D-G~V~IW  783 (784)
                      +|+++ ..++.|.+|++...   +.+ .+..+...+.+++|+||+++|++++.+ +.|.+|
T Consensus       253 ~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~  313 (347)
T 3hfq_A          253 FLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLY  313 (347)
T ss_dssp             EEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             EEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEE
Confidence            88554 55789999999733   222 344556678999999999988888764 899999

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.85  E-value=7.6e-19  Score=190.21  Aligned_cols=244  Identities=14%  Similarity=0.158  Sum_probs=179.4

Q ss_pred             cCCCceEEEEEcCCCCEEEEEeC---CCeEEEEECCCCc--eeeecCCCCCCeEEEEEccCCCEEEEEe-CCCeEEEEcC
Q 047260          505 SRNSKVTCCHFSSDGKLLASSGH---DRKVVLWNMDTLQ--TESTPEDHKSVVTDVRFRPNSSQLATAS-VDKSVRLWDA  578 (784)
Q Consensus       505 ~H~~~V~~l~fspdg~~Lasgs~---Dg~I~IWd~~t~~--~~~~l~~h~~~It~i~fspdg~~Latgs-~Dg~I~IWdl  578 (784)
                      .+...+..++|+|||+ |++++.   ++.|++|++.+++  .+..+..+...+..++|+|++++|++++ .++.|.+|++
T Consensus        37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~  115 (347)
T 3hfq_A           37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKI  115 (347)
T ss_dssp             EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEe
Confidence            3456788899999999 555544   6899999997665  3444445777899999999999998888 6799999999


Q ss_pred             CCCcce--eeeccC---------CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCC-CCeeEEe----e-c-CCeeEEEE
Q 047260          579 ANPNFC--SQAYTG---------HSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSIN-PFLCTHI----T-K-GGTAQVRF  640 (784)
Q Consensus       579 ~~~~~~--~~~~~~---------h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~-~~~~~~~----~-~-~~v~~v~f  640 (784)
                      ......  ...+..         +...+.+++|+|++. ++++...++.|++||+. .+.....    . . .....++|
T Consensus       116 ~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~  194 (347)
T 3hfq_A          116 AADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVF  194 (347)
T ss_dssp             CTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEE
T ss_pred             CCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEE
Confidence            632211  111111         123488999999999 88888889999999998 3432211    1 1 25678999


Q ss_pred             ecCCCEEEEEEC-CCcEEEEECCC--CeE--EEEEeCCC------CCEEEEEEcCCCCEEEEEe--CCeEEEEeCCC---
Q 047260          641 QPRIGQLLAAAS-DKVVSIFDIET--DRQ--THSLQGHA------ELVNYICWDTNGDYLASVS--QNLVKVWSMAS---  704 (784)
Q Consensus       641 sp~~~~Ll~~s~-Dg~I~IwDl~t--~~~--i~~l~~h~------~~V~sl~~spdg~~Lasgs--dd~I~IwDl~t---  704 (784)
                      +|+++++++++. ++.|.+|++..  ++.  +..+....      ..+..++|+|+|++|+++.  ++.|.+||+..   
T Consensus       195 spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~  274 (347)
T 3hfq_A          195 SPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGH  274 (347)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGC
T ss_pred             CCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCc
Confidence            999998777655 78999999874  443  33333322      4588999999999875544  45999999973   


Q ss_pred             CceEEEeccCCCceEEEEEecCCCEEEEEECC-CeEEEE--ECCCCceE
Q 047260          705 GECIQELSSNGNQFHSCVFHPSYSTLLVVGGI-SSLELW--NMAENKSM  750 (784)
Q Consensus       705 ~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~d-g~I~Iw--dl~~~~~~  750 (784)
                      .+.+..+..+...+..++|+|++++|++++.+ +.|.+|  |..+++..
T Consensus       275 ~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~  323 (347)
T 3hfq_A          275 LTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS  323 (347)
T ss_dssp             EEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred             EEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence            25566666666778999999999999888875 799999  55566655

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.85  E-value=1e-19  Score=195.67  Aligned_cols=268  Identities=9%  Similarity=0.041  Sum_probs=190.8

Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCC-CCeEEEEEccCCCEEE-EEeCCCeEEEEcCCCCcceeeecc
Q 047260          512 CCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHK-SVVTDVRFRPNSSQLA-TASVDKSVRLWDAANPNFCSQAYT  589 (784)
Q Consensus       512 ~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~-~~It~i~fspdg~~La-tgs~Dg~I~IWdl~~~~~~~~~~~  589 (784)
                      .+++++++.++++++.++.|++||+.+++.+..+..+. ..+..++|+|++++++ ++..++.|.+||+.+++.......
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~   83 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL   83 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence            45678888999999999999999999998888776443 2578999999998665 445689999999998763322222


Q ss_pred             CC-----CCCeEEEEEcCCCCcEEEEEeC-----------CCeEEEEeCCCC---eeEEe--ecCCeeEEEEecCCCEEE
Q 047260          590 GH-----SSPIMSLDFHPKKTDLFCFCDN-----------DNEIQYWSINPF---LCTHI--TKGGTAQVRFQPRIGQLL  648 (784)
Q Consensus       590 ~h-----~~~V~sl~~sp~~~~ll~sgs~-----------dg~I~iwDl~~~---~~~~~--~~~~v~~v~fsp~~~~Ll  648 (784)
                      .+     ...+.+++|+|++..++++...           ++.|.+||+.+.   ..+..  ....+.+++|+|+++ ++
T Consensus        84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~  162 (349)
T 1jmx_B           84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LY  162 (349)
T ss_dssp             CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EE
T ss_pred             ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EE
Confidence            22     2337889999999866665543           589999999863   22222  234578889999999 66


Q ss_pred             EEECCCcEEEEECCCCeEEEEEeCCCC------------------------CEEEEEEcCCCCEEEEEeCC--eEEEEeC
Q 047260          649 AAASDKVVSIFDIETDRQTHSLQGHAE------------------------LVNYICWDTNGDYLASVSQN--LVKVWSM  702 (784)
Q Consensus       649 ~~s~Dg~I~IwDl~t~~~i~~l~~h~~------------------------~V~sl~~spdg~~Lasgsdd--~I~IwDl  702 (784)
                      +++  +.|.+||+.+++.+..+..+..                        ....+++++++.......++  .+..+|.
T Consensus       163 ~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  240 (349)
T 1jmx_B          163 VAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDL  240 (349)
T ss_dssp             EES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEET
T ss_pred             Ecc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEec
Confidence            653  4499999999988877754320                        33456666554322111111  2333566


Q ss_pred             CCCce-EEEeccCCCceEEEEEec-CCCEEEEEECCCeEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEECCCcE
Q 047260          703 ASGEC-IQELSSNGNQFHSCVFHP-SYSTLLVVGGISSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHDSSV  780 (784)
Q Consensus       703 ~t~~~-i~~l~~~~~~I~sl~fsp-dg~~L~s~s~dg~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs~DG~V  780 (784)
                      .+++. +..+..+...+..++|+| ++++++++  ++.|.+||+.+++.+........+.+++|+|++++|++++.++.|
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~v  318 (349)
T 1jmx_B          241 KTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDL  318 (349)
T ss_dssp             TTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSEE
T ss_pred             cCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEecCCCeE
Confidence            65542 222334556788999999 99998888  889999999999887555455668899999999988888889999


Q ss_pred             EEeC
Q 047260          781 KLWK  784 (784)
Q Consensus       781 ~IWd  784 (784)
                      ++||
T Consensus       319 ~v~d  322 (349)
T 1jmx_B          319 AVFN  322 (349)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9996

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.84  E-value=1.2e-18  Score=187.92  Aligned_cols=234  Identities=8%  Similarity=0.056  Sum_probs=188.8

Q ss_pred             CCCCeEEEEEccCCCEEEEEeC-------CCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEE
Q 047260          548 HKSVVTDVRFRPNSSQLATASV-------DKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYW  620 (784)
Q Consensus       548 h~~~It~i~fspdg~~Latgs~-------Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iw  620 (784)
                      ....+..++|+|++++|++++.       ++.|.+||..+++. ...+.. ...+..++|+|++..+++++..++.|.+|
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~-~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~  116 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEV-TQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAI  116 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCE-EEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEE
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeE-EEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEE
Confidence            3456789999999999988874       56899999998773 333332 34578899999999888888889999999


Q ss_pred             eCCCCeeEEeecC------------CeeEEEEecCCCEEEEEE--CCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCC
Q 047260          621 SINPFLCTHITKG------------GTAQVRFQPRIGQLLAAA--SDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNG  686 (784)
Q Consensus       621 Dl~~~~~~~~~~~------------~v~~v~fsp~~~~Ll~~s--~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg  686 (784)
                      |+.+.+.+..+..            .+..+.|+|+++++++++  .++.|.+||+++++.+..+..+...+.+++|+|++
T Consensus       117 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg  196 (353)
T 3vgz_A          117 DAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEG  196 (353)
T ss_dssp             ETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTT
T ss_pred             eCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCC
Confidence            9998877665542            157899999999888887  37889999999999998887666678899999999


Q ss_pred             CEEEEEeCC-eEEEEeCCCCceEEEecc----CCCceEEEEEecCCCEEEEEECC-CeEEEEECCCCceEEecccCCceE
Q 047260          687 DYLASVSQN-LVKVWSMASGECIQELSS----NGNQFHSCVFHPSYSTLLVVGGI-SSLELWNMAENKSMTIAAHENIIS  760 (784)
Q Consensus       687 ~~Lasgsdd-~I~IwDl~t~~~i~~l~~----~~~~I~sl~fspdg~~L~s~s~d-g~I~Iwdl~~~~~~~~~~h~~~V~  760 (784)
                      ++|++++.+ .|.+||+.+++.+..+..    +...+..++|+|+++++++++.+ +.|.+||+.+++......... ..
T Consensus       197 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~  275 (353)
T 3vgz_A          197 KRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE-SL  275 (353)
T ss_dssp             TEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS-CC
T ss_pred             CEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC-Cc
Confidence            988888755 999999999998887764    44567889999999988877765 899999999988774333222 25


Q ss_pred             EEEEeCCCCEEEEEE-CCCcEEEeC
Q 047260          761 ALAQSPVTGMVASAS-HDSSVKLWK  784 (784)
Q Consensus       761 slafspdg~~LaSgs-~DG~V~IWd  784 (784)
                      +++|+|+++++++++ .++.|.+||
T Consensus       276 ~~~~s~dg~~l~v~~~~~~~v~~~d  300 (353)
T 3vgz_A          276 AVLFNPARNEAYVTHRQAGKVSVID  300 (353)
T ss_dssp             CEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             eEEECCCCCEEEEEECCCCeEEEEE
Confidence            799999999666665 689999996

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.84  E-value=1.4e-18  Score=189.37  Aligned_cols=263  Identities=9%  Similarity=0.067  Sum_probs=185.9

Q ss_pred             CCEEEEEe----CCCeEEEEEC--CCCceeeecCCCCCCeEEEEEccCCCEEEEEeCC----CeEEEEcCCCC--cc-ee
Q 047260          519 GKLLASSG----HDRKVVLWNM--DTLQTESTPEDHKSVVTDVRFRPNSSQLATASVD----KSVRLWDAANP--NF-CS  585 (784)
Q Consensus       519 g~~Lasgs----~Dg~I~IWd~--~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~D----g~I~IWdl~~~--~~-~~  585 (784)
                      ..++++|+    .++.|.+|++  .+++.......+...+..++|+|++++|++++.+    +.|.+|++...  .. .+
T Consensus        13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~   92 (361)
T 3scy_A           13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLL   92 (361)
T ss_dssp             EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEE
T ss_pred             ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEe
Confidence            34556664    3567889876  4454433222267788889999999999999886    79999998763  21 22


Q ss_pred             eeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEE------ee-----------cCCeeEEEEecCCCEEE
Q 047260          586 QAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTH------IT-----------KGGTAQVRFQPRIGQLL  648 (784)
Q Consensus       586 ~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~------~~-----------~~~v~~v~fsp~~~~Ll  648 (784)
                      .....+...+..+++  ++..++++...++.|.+|++.....+.      .+           ...+.+++|+|++++++
T Consensus        93 ~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~  170 (361)
T 3scy_A           93 NTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLL  170 (361)
T ss_dssp             EEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEE
T ss_pred             eEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEE
Confidence            223335556778888  777677777789999999997432211      11           12347799999999888


Q ss_pred             EEEC-CCcEEEEECCCCe-------E------EEEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEeCCCCce--EEE
Q 047260          649 AAAS-DKVVSIFDIETDR-------Q------THSLQGHAELVNYICWDTNGDYLASVS--QNLVKVWSMASGEC--IQE  710 (784)
Q Consensus       649 ~~s~-Dg~I~IwDl~t~~-------~------i~~l~~h~~~V~sl~~spdg~~Lasgs--dd~I~IwDl~t~~~--i~~  710 (784)
                      +++. ++.|.+|++....       .      ......+...+..++|+|+|++|++++  ++.|.+||+.+++.  +..
T Consensus       171 ~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~  250 (361)
T 3scy_A          171 ADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQT  250 (361)
T ss_dssp             EEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEE
T ss_pred             EEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEE
Confidence            7776 7999999887543       1      111223455688999999999888777  44999999987754  333


Q ss_pred             ec---cCCCceEEEEEecCCCEEEEEECC--CeEEEEECC--CCceE--EecccCCceEEEEEeCCCCEEEEEE-CCCcE
Q 047260          711 LS---SNGNQFHSCVFHPSYSTLLVVGGI--SSLELWNMA--ENKSM--TIAAHENIISALAQSPVTGMVASAS-HDSSV  780 (784)
Q Consensus       711 l~---~~~~~I~sl~fspdg~~L~s~s~d--g~I~Iwdl~--~~~~~--~~~~h~~~V~slafspdg~~LaSgs-~DG~V  780 (784)
                      +.   .+......++|+|++++|+++..+  +.|.+|++.  +++..  ........+.+++|+||+++|++++ .++.|
T Consensus       251 ~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v  330 (361)
T 3scy_A          251 VAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNVI  330 (361)
T ss_dssp             EESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTEE
T ss_pred             EecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCCCE
Confidence            32   233456899999999999877765  799999986  44432  2222255788999999999988888 67899


Q ss_pred             EEe
Q 047260          781 KLW  783 (784)
Q Consensus       781 ~IW  783 (784)
                      .+|
T Consensus       331 ~v~  333 (361)
T 3scy_A          331 QIF  333 (361)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            996

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.84  E-value=3.3e-19  Score=201.07  Aligned_cols=236  Identities=9%  Similarity=0.121  Sum_probs=174.2

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc----------eeee-----cCCCCCCeEEEEEccCCCEEE----EE
Q 047260          507 NSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQ----------TEST-----PEDHKSVVTDVRFRPNSSQLA----TA  567 (784)
Q Consensus       507 ~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~----------~~~~-----l~~h~~~It~i~fspdg~~La----tg  567 (784)
                      ...++++++++++.+|++++.|+ |+||+.....          .+..     ...|...|++++|+|++++|+    ++
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg  114 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS  114 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred             CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence            34588999999999999999888 8998753210          1110     113567899999999999999    78


Q ss_pred             eCCCeEEEEcCCCC-----cc-----eeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEe---ecCC
Q 047260          568 SVDKSVRLWDAANP-----NF-----CSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHI---TKGG  634 (784)
Q Consensus       568 s~Dg~I~IWdl~~~-----~~-----~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~---~~~~  634 (784)
                      +.|+.|+|||+.+.     ..     ....+.+|...|.+++|+|+...+|++++.||.|++||+++......   +...
T Consensus       115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~  194 (434)
T 2oit_A          115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVA  194 (434)
T ss_dssp             TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGC
T ss_pred             CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCc
Confidence            88999999998653     11     24556679999999999999777999999999999999998765533   3468


Q ss_pred             eeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCC-------CCEEEEEEcCCCCEEEEEe--CC------eEEE
Q 047260          635 TAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHA-------ELVNYICWDTNGDYLASVS--QN------LVKV  699 (784)
Q Consensus       635 v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~-------~~V~sl~~spdg~~Lasgs--dd------~I~I  699 (784)
                      +.+++|+|++.+|++++.||.|++||++ ++....+..|.       ..|.+++|++++.++++.+  ++      .+++
T Consensus       195 v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i  273 (434)
T 2oit_A          195 VTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVM  273 (434)
T ss_dssp             EEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEE
T ss_pred             eeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEE
Confidence            9999999999999999999999999998 55555554432       3899999999988886654  22      4999


Q ss_pred             EeCCCCc-----eEEEec-------cCCCceEEEEEecCCCEEEEEECC-CeEEEEEC
Q 047260          700 WSMASGE-----CIQELS-------SNGNQFHSCVFHPSYSTLLVVGGI-SSLELWNM  744 (784)
Q Consensus       700 wDl~t~~-----~i~~l~-------~~~~~I~sl~fspdg~~L~s~s~d-g~I~Iwdl  744 (784)
                      |+++..+     ....+.       ....+...+.+.++.+++++++.. ..|.|+..
T Consensus       274 ~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~  331 (434)
T 2oit_A          274 ALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILAR  331 (434)
T ss_dssp             EECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEE
T ss_pred             EEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEe
Confidence            9998642     112221       112223344455777777777664 34555543

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.83  E-value=3.5e-20  Score=221.39  Aligned_cols=266  Identities=14%  Similarity=0.152  Sum_probs=200.7

Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCC---CeEEEEEccCCCEEEEEeC---------CCeEEEEcCC
Q 047260          512 CCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKS---VVTDVRFRPNSSQLATASV---------DKSVRLWDAA  579 (784)
Q Consensus       512 ~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~---~It~i~fspdg~~Latgs~---------Dg~I~IWdl~  579 (784)
                      +++|+|||+++++ +.|+.|++||+.+++....+..|..   .|.+++|+|||++|++++.         |+.|++||+.
T Consensus        20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~   98 (719)
T 1z68_A           20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS   98 (719)
T ss_dssp             CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred             ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence            6789999976554 5699999999999988777765543   4899999999999999876         7899999999


Q ss_pred             CCccee-eeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCC---------------------eeE
Q 047260          580 NPNFCS-QAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGG---------------------TAQ  637 (784)
Q Consensus       580 ~~~~~~-~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~---------------------v~~  637 (784)
                      +++... ..+   ...+.+++|+|+|..++++ . ++.|++||+.++.........                     ...
T Consensus        99 ~g~~~~~~~l---~~~~~~~~~SPDG~~la~~-~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~  173 (719)
T 1z68_A           99 NGEFVRGNEL---PRPIQYLCWSPVGSKLAYV-Y-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYA  173 (719)
T ss_dssp             TTEECCSSCC---CSSBCCEEECSSTTCEEEE-E-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCC
T ss_pred             CCccccceec---CcccccceECCCCCEEEEE-E-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCccc
Confidence            876310 112   2568899999999966554 3 789999999877665443211                     147


Q ss_pred             EEEecCCCEEEEEECCC----------------------------------cEEEEECCCCeEE--EE------EeCCCC
Q 047260          638 VRFQPRIGQLLAAASDK----------------------------------VVSIFDIETDRQT--HS------LQGHAE  675 (784)
Q Consensus       638 v~fsp~~~~Ll~~s~Dg----------------------------------~I~IwDl~t~~~i--~~------l~~h~~  675 (784)
                      ++|+|+|+.|++++.|.                                  .|++||+.+++..  ..      +.+|..
T Consensus       174 ~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~  253 (719)
T 1z68_A          174 LWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDY  253 (719)
T ss_dssp             EEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCE
T ss_pred             EEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcc
Confidence            99999999999887642                                  7889999987642  11      235778


Q ss_pred             CEEEEEEcCCCCEEEEEeCC-----eEEEEe----CCCCceEEEe----ccCCCceE-----EEEEecCCCEEEE--EEC
Q 047260          676 LVNYICWDTNGDYLASVSQN-----LVKVWS----MASGECIQEL----SSNGNQFH-----SCVFHPSYSTLLV--VGG  735 (784)
Q Consensus       676 ~V~sl~~spdg~~Lasgsdd-----~I~IwD----l~t~~~i~~l----~~~~~~I~-----sl~fspdg~~L~s--~s~  735 (784)
                      .+..++|+||++++++..+.     .|.+||    +.++++...+    ..+...+.     .+.|+|+++.|+.  ...
T Consensus       254 ~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  333 (719)
T 1z68_A          254 YFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDK  333 (719)
T ss_dssp             EEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECT
T ss_pred             eEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEcc
Confidence            89999999998877775421     589999    8777665444    35556666     7899999997655  334


Q ss_pred             CC--eEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEECC-----CcEEEeC
Q 047260          736 IS--SLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHD-----SSVKLWK  784 (784)
Q Consensus       736 dg--~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs~D-----G~V~IWd  784 (784)
                      +|  .|.+||+.+++...+..+...|..+.++ +++.|+..+.+     +.++||+
T Consensus       334 ~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~  388 (719)
T 1z68_A          334 DGYKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYR  388 (719)
T ss_dssp             TSCEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEE
T ss_pred             CCceEEEEEECCCCceEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEE
Confidence            44  6888898888766777777778888888 88877777665     7788884

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.83  E-value=2.7e-19  Score=213.67  Aligned_cols=272  Identities=10%  Similarity=0.028  Sum_probs=190.2

Q ss_pred             ceEEEEEcCCCCEEEEEeC---------CCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCC
Q 047260          509 KVTCCHFSSDGKLLASSGH---------DRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAA  579 (784)
Q Consensus       509 ~V~~l~fspdg~~Lasgs~---------Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~  579 (784)
                      .|.+++|||||++|++++.         ++.|++||+.+++.+... .....+.+++|+|||+.|+++. |+.|++||+.
T Consensus        61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~-~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~  138 (719)
T 1z68_A           61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGN-ELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRP  138 (719)
T ss_dssp             TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSS-CCCSSBCCEEECSSTTCEEEEE-TTEEEEESST
T ss_pred             ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccce-ecCcccccceECCCCCEEEEEE-CCeEEEEeCC
Confidence            4889999999999998876         789999999988763111 1135689999999999999986 7899999998


Q ss_pred             CCcceeeeccCCCCCe-----------------EEEEEcCCCCcEEEEEeCCC---------------------------
Q 047260          580 NPNFCSQAYTGHSSPI-----------------MSLDFHPKKTDLFCFCDNDN---------------------------  615 (784)
Q Consensus       580 ~~~~~~~~~~~h~~~V-----------------~sl~~sp~~~~ll~sgs~dg---------------------------  615 (784)
                      ++........++...|                 .+++|+||+..++++...++                           
T Consensus       139 ~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g  218 (719)
T 1z68_A          139 GDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAG  218 (719)
T ss_dssp             TSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTT
T ss_pred             CCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCC
Confidence            8664322223333322                 48999999986665554322                           


Q ss_pred             ------eEEEEeCCCCeeE---Ee--------ecCCeeEEEEecCCCEEEEEECC----CcEEEEE----CCCCeEEEEE
Q 047260          616 ------EIQYWSINPFLCT---HI--------TKGGTAQVRFQPRIGQLLAAASD----KVVSIFD----IETDRQTHSL  670 (784)
Q Consensus       616 ------~I~iwDl~~~~~~---~~--------~~~~v~~v~fsp~~~~Ll~~s~D----g~I~IwD----l~t~~~i~~l  670 (784)
                            .|++||+.+....   ..        ....+..++|+|++..+++....    ..|.+||    +.+++....+
T Consensus       219 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~  298 (719)
T 1z68_A          219 AKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQ  298 (719)
T ss_dssp             SCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGG
T ss_pred             CCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEE
Confidence                  7889999876542   11        22356889999996655554332    2488999    8777655444


Q ss_pred             ----eCCCCCEE-----EEEEcCCCCEEEE--Ee-CC--eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECC
Q 047260          671 ----QGHAELVN-----YICWDTNGDYLAS--VS-QN--LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGI  736 (784)
Q Consensus       671 ----~~h~~~V~-----sl~~spdg~~Las--gs-dd--~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~d  736 (784)
                          ..|...+.     .+.|+|||+.|+.  .. ++  .|.+||+.+++ ...+..+...+..+.++ +++.|+..+.+
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~  376 (719)
T 1z68_A          299 EHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNE  376 (719)
T ss_dssp             EEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESC
T ss_pred             ecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEec
Confidence                35666666     7899999996554  32 33  78899988776 45666666667888877 88888877765


Q ss_pred             -----CeEEEEECCC--Cc--eEEec----ccCCceEEEEEeCCCCEEEE-EECC--CcEEEeC
Q 047260          737 -----SSLELWNMAE--NK--SMTIA----AHENIISALAQSPVTGMVAS-ASHD--SSVKLWK  784 (784)
Q Consensus       737 -----g~I~Iwdl~~--~~--~~~~~----~h~~~V~slafspdg~~LaS-gs~D--G~V~IWd  784 (784)
                           +.+++|.+..  +.  ...+.    +|...+..+.|+|++++|+. ++.+  ..+.+||
T Consensus       377 ~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d  440 (719)
T 1z68_A          377 FEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHD  440 (719)
T ss_dssp             GGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEEC
T ss_pred             CCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEE
Confidence                 7788887653  32  22332    26667889999999886664 3333  3456664

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.80  E-value=1.7e-18  Score=189.77  Aligned_cols=270  Identities=13%  Similarity=0.054  Sum_probs=188.5

Q ss_pred             ceEEEEEcCCCCEEEEEeCC---CeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCccee
Q 047260          509 KVTCCHFSSDGKLLASSGHD---RKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCS  585 (784)
Q Consensus       509 ~V~~l~fspdg~~Lasgs~D---g~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~  585 (784)
                      .+.+++|+|||++|+.+...   ..|.+||+.+++.......+...+..+.|+|++++|+.++.++.|++||+.+++ ..
T Consensus        37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~-~~  115 (396)
T 3c5m_A           37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLE-EQ  115 (396)
T ss_dssp             CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCC-EE
T ss_pred             eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCC-cE
Confidence            37788999999998877543   368899999887655444333334448899999999999999999999998765 33


Q ss_pred             eeccCCCCCeEE-------------------EEEcCCCCcEEEEE----eCCCeEEEEeCCCCeeEEe--ecCCeeEEEE
Q 047260          586 QAYTGHSSPIMS-------------------LDFHPKKTDLFCFC----DNDNEIQYWSINPFLCTHI--TKGGTAQVRF  640 (784)
Q Consensus       586 ~~~~~h~~~V~s-------------------l~~sp~~~~ll~sg----s~dg~I~iwDl~~~~~~~~--~~~~v~~v~f  640 (784)
                      .....+......                   +.|+|++..+++..    ..+..|++||+.+.+....  ....+..+.|
T Consensus       116 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~  195 (396)
T 3c5m_A          116 VIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIY  195 (396)
T ss_dssp             EEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEE
T ss_pred             EEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceE
Confidence            333333332222                   34567766544432    4567899999987655433  3456788999


Q ss_pred             ec-CCCEEEEEECC------CcEEEEECCCCeEEEEEeCC--CCCEEEEEEcCCCCEEEEEe-C-----CeEEEEeCCCC
Q 047260          641 QP-RIGQLLAAASD------KVVSIFDIETDRQTHSLQGH--AELVNYICWDTNGDYLASVS-Q-----NLVKVWSMASG  705 (784)
Q Consensus       641 sp-~~~~Ll~~s~D------g~I~IwDl~t~~~i~~l~~h--~~~V~sl~~spdg~~Lasgs-d-----d~I~IwDl~t~  705 (784)
                      +| ++..|+.++.+      ..|.+||+..++.. .+..+  ...+..++|+|+|++|+..+ +     ..|++||+.++
T Consensus       196 sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g  274 (396)
T 3c5m_A          196 RPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETL  274 (396)
T ss_dssp             ETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTC
T ss_pred             CCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCC
Confidence            99 77777776653      46899998765433 33323  23578899999999776654 2     23999999988


Q ss_pred             ceEEEeccCCCceEEEEEec-CCCEEEEEE----------------CCCeEEEEECCCCceEEecccCC-----------
Q 047260          706 ECIQELSSNGNQFHSCVFHP-SYSTLLVVG----------------GISSLELWNMAENKSMTIAAHEN-----------  757 (784)
Q Consensus       706 ~~i~~l~~~~~~I~sl~fsp-dg~~L~s~s----------------~dg~I~Iwdl~~~~~~~~~~h~~-----------  757 (784)
                      +........  ... +.|+| +++++++++                .+..|++||+.+++...+..+..           
T Consensus       275 ~~~~l~~~~--~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~  351 (396)
T 3c5m_A          275 ENEEVMVMP--PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQI  351 (396)
T ss_dssp             CEEEEEECC--SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSST
T ss_pred             CeEEeeeCC--CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccC
Confidence            654433222  123 89999 999888765                24689999999887766666654           


Q ss_pred             ceEEEEEeCCCCEEEEEEC-CCcEEEe
Q 047260          758 IISALAQSPVTGMVASASH-DSSVKLW  783 (784)
Q Consensus       758 ~V~slafspdg~~LaSgs~-DG~V~IW  783 (784)
                      .+..++|+||++.|+.++. ++...||
T Consensus       352 ~~~~~~~s~dg~~l~~~s~~~~~~~l~  378 (396)
T 3c5m_A          352 THPHPSFTPNDDGVLFTSDFEGVPAIY  378 (396)
T ss_dssp             TCCCCEECTTSSEEEEEECTTSSCEEE
T ss_pred             CCCCceEccCCCeEEEEecCCCCceEE
Confidence            2567899999998887765 5666665

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.80  E-value=1.4e-17  Score=182.51  Aligned_cols=262  Identities=8%  Similarity=0.058  Sum_probs=182.6

Q ss_pred             EEEEEeCC--CeEEEEEC--CCCceeee--cC-CCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCC-CCcceeeecc-CC
Q 047260          521 LLASSGHD--RKVVLWNM--DTLQTEST--PE-DHKSVVTDVRFRPNSSQLATASVDKSVRLWDAA-NPNFCSQAYT-GH  591 (784)
Q Consensus       521 ~Lasgs~D--g~I~IWd~--~t~~~~~~--l~-~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~-~~~~~~~~~~-~h  591 (784)
                      +|++|+..  +.|.+|++  .+++....  .. .....+..++|+|++++|++++.+ .|.+||+. +++ ...... ..
T Consensus         4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~-~~~~~~~~~   81 (365)
T 1jof_A            4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTE-IVHEASHPI   81 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTE-EEEEEEEEC
T ss_pred             EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCC-EEEeeEeec
Confidence            35556543  46777765  45544222  11 234568899999999999999988 99999997 554 222211 01


Q ss_pred             CCCeEEEEEcCCCCcE-EEEEe-------------CCCeEEEEeCCC-CeeEE---e----ecCCeeEEEEecCCCEEEE
Q 047260          592 SSPIMSLDFHPKKTDL-FCFCD-------------NDNEIQYWSINP-FLCTH---I----TKGGTAQVRFQPRIGQLLA  649 (784)
Q Consensus       592 ~~~V~sl~~sp~~~~l-l~sgs-------------~dg~I~iwDl~~-~~~~~---~----~~~~v~~v~fsp~~~~Ll~  649 (784)
                      .+.+.+++|+|++..+ +++++             .++.+.+|+++. ++...   .    ....+..++|+|+++++++
T Consensus        82 ~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~  161 (365)
T 1jof_A           82 GGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYS  161 (365)
T ss_dssp             CSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEE
T ss_pred             CCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEE
Confidence            1235678999999863 44443             689999999973 43322   1    1356889999999999888


Q ss_pred             EEC-CCcEEEEECC-CCeEE--EEEe--CCCCCEEEEEEcCCCCEEEEEeC--CeEEEEeCC--CCceE---EEecc---
Q 047260          650 AAS-DKVVSIFDIE-TDRQT--HSLQ--GHAELVNYICWDTNGDYLASVSQ--NLVKVWSMA--SGECI---QELSS---  713 (784)
Q Consensus       650 ~s~-Dg~I~IwDl~-t~~~i--~~l~--~h~~~V~sl~~spdg~~Lasgsd--d~I~IwDl~--t~~~i---~~l~~---  713 (784)
                      +.. ++.|++||+. +++..  ..+.  .|...+..++|+|+|++|+++++  +.|.+|++.  +++..   ..+..   
T Consensus       162 ~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~  241 (365)
T 1jof_A          162 ADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPP  241 (365)
T ss_dssp             EETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCT
T ss_pred             EcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCC
Confidence            775 6899999998 67543  3343  24567899999999999888774  489998765  56543   22221   


Q ss_pred             C----CC------ceEEEE-EecCCCEEEEEECC-C-----eEEEEECC-CCceEE----ecccCCceEEEEEeC---CC
Q 047260          714 N----GN------QFHSCV-FHPSYSTLLVVGGI-S-----SLELWNMA-ENKSMT----IAAHENIISALAQSP---VT  768 (784)
Q Consensus       714 ~----~~------~I~sl~-fspdg~~L~s~s~d-g-----~I~Iwdl~-~~~~~~----~~~h~~~V~slafsp---dg  768 (784)
                      .    ..      .+..++ |+|++++|+++..+ +     .|.+|++. +++...    ...+...+..++|+|   |+
T Consensus       242 ~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg  321 (365)
T 1jof_A          242 GIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSD  321 (365)
T ss_dssp             TCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCT
T ss_pred             CcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCC
Confidence            1    11      478899 99999998877643 2     89999996 555442    223555677899999   89


Q ss_pred             CEEEEEECC-CcEEEeC
Q 047260          769 GMVASASHD-SSVKLWK  784 (784)
Q Consensus       769 ~~LaSgs~D-G~V~IWd  784 (784)
                      ++|++++.+ +.|.||+
T Consensus       322 ~~l~v~~~~~~~v~v~~  338 (365)
T 1jof_A          322 EWMAITDDQEGWLEIYR  338 (365)
T ss_dssp             TEEEEECSSSCEEEEEE
T ss_pred             CEEEEEEcCCCeEEEEE
Confidence            999999864 8999995

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.79  E-value=3.3e-18  Score=199.30  Aligned_cols=229  Identities=9%  Similarity=0.030  Sum_probs=175.8

Q ss_pred             CCCeEEEEEccCCCEEEEEeC-CCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeC---CCeEEEE--eC
Q 047260          549 KSVVTDVRFRPNSSQLATASV-DKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDN---DNEIQYW--SI  622 (784)
Q Consensus       549 ~~~It~i~fspdg~~Latgs~-Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~---dg~I~iw--Dl  622 (784)
                      ..+|.+++|+|||+.||+++. ||+++||+++++. .......+...+..+.|+|+  .++++++.   +....+|  +.
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~-~~~lt~~~~~~~~~~~~spd--~~l~~~~~~~g~~~~~l~~~~~   97 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGE-TVKLNREPINSVLDPHYGVG--RVILVRDVSKGAEQHALFKVNT   97 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTE-EEECCSSCCSEECEECTTCS--EEEEEEECSTTSCCEEEEEEET
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCC-cEeeecccccccccccCCCC--eEEEEeccCCCCcceEEEEEec
Confidence            467999999999999999887 9999999996544 43433333368999999998  47776664   4444554  44


Q ss_pred             --CCCeeEEeecCCeeEEEEecCCCE-EEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-C----
Q 047260          623 --NPFLCTHITKGGTAQVRFQPRIGQ-LLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVS-Q----  694 (784)
Q Consensus       623 --~~~~~~~~~~~~v~~v~fsp~~~~-Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgs-d----  694 (784)
                        ................+|+|+++. +++.+.++.+.+||+.+++.......+.   .+++|+|||++|++++ +    
T Consensus        98 ~~~g~~~~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~  174 (582)
T 3o4h_A           98 SRPGEEQRLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGR  174 (582)
T ss_dssp             TSTTCCEECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTE
T ss_pred             cCCCccccccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCC
Confidence              332221112234557789999865 4455556667799999887665554333   7899999999999765 3    


Q ss_pred             CeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCC--eEEEEECCCCceEEecccCCceEEEE--------E
Q 047260          695 NLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGIS--SLELWNMAENKSMTIAAHENIISALA--------Q  764 (784)
Q Consensus       695 d~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg--~I~Iwdl~~~~~~~~~~h~~~V~sla--------f  764 (784)
                      ..|++||+.+++.. .+..+...+..++|+|||+.|+++..++  .|++||+.+++...+..|...+..++        |
T Consensus       175 ~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (582)
T 3o4h_A          175 VSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGY  253 (582)
T ss_dssp             EEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEEECCCSCSHHHHHCCSEEEEEEE
T ss_pred             eEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEEEccCCCcChhhhhhccccceeE
Confidence            37999999988765 6677888899999999999999888888  89999999988776667777777777        9


Q ss_pred             eCCCCEEEEEECCCcEEEeC
Q 047260          765 SPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       765 spdg~~LaSgs~DG~V~IWd  784 (784)
                      +|||.++++++.||.++||+
T Consensus       254 spdg~~~~~~~~~g~~~l~~  273 (582)
T 3o4h_A          254 LPDGRLAVVARREGRSAVFI  273 (582)
T ss_dssp             CTTSCEEEEEEETTEEEEEE
T ss_pred             cCCCcEEEEEEcCCcEEEEE
Confidence            99999999999999999995

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.79  E-value=5.8e-17  Score=177.64  Aligned_cols=241  Identities=13%  Similarity=0.133  Sum_probs=174.0

Q ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEECC-CCceeeecCC-CCCCeEEEEEccCCCE--EEEEe-------------
Q 047260          506 RNSKVTCCHFSSDGKLLASSGHDRKVVLWNMD-TLQTESTPED-HKSVVTDVRFRPNSSQ--LATAS-------------  568 (784)
Q Consensus       506 H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~-t~~~~~~l~~-h~~~It~i~fspdg~~--Latgs-------------  568 (784)
                      +...+..++|+|||++|++++.+ .|.+|++. +++....... ..+.+.+++|+|++++  +++++             
T Consensus        38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~  116 (365)
T 1jof_A           38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence            34568899999999999998888 99999997 7766543321 1123667899999994  45553             


Q ss_pred             CCCeEEEEcCCCCcceeeecc----CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCC-CCeeE--Eee-----cCCee
Q 047260          569 VDKSVRLWDAANPNFCSQAYT----GHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSIN-PFLCT--HIT-----KGGTA  636 (784)
Q Consensus       569 ~Dg~I~IWdl~~~~~~~~~~~----~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~-~~~~~--~~~-----~~~v~  636 (784)
                      .++.+.+|++.........+.    .+...+.+++|+|++..++++...++.|++||++ +++..  ...     ...+.
T Consensus       117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~  196 (365)
T 1jof_A          117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR  196 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred             CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCC
Confidence            689999999974222322222    2456799999999998666555557899999998 55432  222     24578


Q ss_pred             EEEEecCCCEEEEEEC-CCcEEEEECC--CCeEE---EEEeC-------CCC------CEEEEE-EcCCCCEEEEEe--C
Q 047260          637 QVRFQPRIGQLLAAAS-DKVVSIFDIE--TDRQT---HSLQG-------HAE------LVNYIC-WDTNGDYLASVS--Q  694 (784)
Q Consensus       637 ~v~fsp~~~~Ll~~s~-Dg~I~IwDl~--t~~~i---~~l~~-------h~~------~V~sl~-~spdg~~Lasgs--d  694 (784)
                      .++|+|+++++++++. ++.|.+|++.  +++..   ..+..       |..      .+..++ |+|||++|+++.  .
T Consensus       197 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~  276 (365)
T 1jof_A          197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN  276 (365)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred             EeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCC
Confidence            8999999999988886 6899999865  45542   22221       121      588999 999999887765  3


Q ss_pred             C-----eEEEEeCC-CCceEE---EeccCCCceEEEEEec---CCCEEEEEECC-CeEEEEECCCC
Q 047260          695 N-----LVKVWSMA-SGECIQ---ELSSNGNQFHSCVFHP---SYSTLLVVGGI-SSLELWNMAEN  747 (784)
Q Consensus       695 d-----~I~IwDl~-t~~~i~---~l~~~~~~I~sl~fsp---dg~~L~s~s~d-g~I~Iwdl~~~  747 (784)
                      +     .|.+|++. +++...   .+..+...+..++|+|   ++++|++++.+ +.|.+|++...
T Consensus       277 ~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          277 KFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             STTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             CCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence            4     89999996 566443   2333445567889999   89999999875 89999998776

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.79  E-value=2.5e-17  Score=176.93  Aligned_cols=268  Identities=10%  Similarity=0.056  Sum_probs=183.4

Q ss_pred             CCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCC-CceEEEEEcCCCCEEE-EEeC
Q 047260          450 IDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRN-SKVTCCHFSSDGKLLA-SSGH  527 (784)
Q Consensus       450 ~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~-~~V~~l~fspdg~~La-sgs~  527 (784)
                      ..+++.+++.++.|.+|+.....                          .+..+..+. ..+..++|+|+|++++ ++..
T Consensus        10 ~~~~~v~~~~~~~v~~~d~~~~~--------------------------~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~   63 (349)
T 1jmx_B           10 GHEYMIVTNYPNNLHVVDVASDT--------------------------VYKSCVMPDKFGPGTAMMAPDNRTAYVLNNH   63 (349)
T ss_dssp             TCEEEEEEETTTEEEEEETTTTE--------------------------EEEEEECSSCCSSCEEEECTTSSEEEEEETT
T ss_pred             CCEEEEEeCCCCeEEEEECCCCc--------------------------EEEEEecCCCCCCceeEECCCCCEEEEEeCC
Confidence            44556677788999999763221                          122222222 2578899999998665 4557


Q ss_pred             CCeEEEEECCCCceeeecCCCC------CCeEEEEEccCCCEEEEEeCC------------CeEEEEcCCCCcce--eee
Q 047260          528 DRKVVLWNMDTLQTESTPEDHK------SVVTDVRFRPNSSQLATASVD------------KSVRLWDAANPNFC--SQA  587 (784)
Q Consensus       528 Dg~I~IWd~~t~~~~~~l~~h~------~~It~i~fspdg~~Latgs~D------------g~I~IWdl~~~~~~--~~~  587 (784)
                      ++.|.+||+.+++.+..+..+.      ..+.+++|+|++++|++++.+            +.|.+||+.+++..  ...
T Consensus        64 ~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~  143 (349)
T 1jmx_B           64 YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRT  143 (349)
T ss_dssp             TTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEE
T ss_pred             CCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeee
Confidence            8999999999998877765332      337899999999999999865            89999999874421  122


Q ss_pred             ccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCC---------------------------eeEEEE
Q 047260          588 YTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGG---------------------------TAQVRF  640 (784)
Q Consensus       588 ~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~---------------------------v~~v~f  640 (784)
                      + .+...+.+++|+|++. +++ +  ++.|++||+.+.+.+..+...                           ...+.+
T Consensus       144 ~-~~~~~~~~~~~s~dg~-l~~-~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (349)
T 1jmx_B          144 F-PMPRQVYLMRAADDGS-LYV-A--GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIAR  218 (349)
T ss_dssp             E-ECCSSCCCEEECTTSC-EEE-E--SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEE
T ss_pred             c-cCCCcccceeECCCCc-EEE-c--cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeee
Confidence            2 2344688999999998 655 3  344999999987766554421                           223444


Q ss_pred             ecCCCEEEEEE-CCCcEEEEECCCCeE-EEEEeCCCCCEEEEEEcC-CCCEEEEEeCCeEEEEeCCCCceEEEeccCCCc
Q 047260          641 QPRIGQLLAAA-SDKVVSIFDIETDRQ-THSLQGHAELVNYICWDT-NGDYLASVSQNLVKVWSMASGECIQELSSNGNQ  717 (784)
Q Consensus       641 sp~~~~Ll~~s-~Dg~I~IwDl~t~~~-i~~l~~h~~~V~sl~~sp-dg~~Lasgsdd~I~IwDl~t~~~i~~l~~~~~~  717 (784)
                      ++++....... ....+..+|..+++. ...+..+...+..++|+| ++++++++ ++.|.+||+.+++.+..+... ..
T Consensus       219 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~~-~~  296 (349)
T 1jmx_B          219 FKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANLD-HT  296 (349)
T ss_dssp             C-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEECS-SC
T ss_pred             cCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-cCeEEEEECccCeEEEEEcCC-CC
Confidence            44331110000 001122244444432 112233566789999999 99999988 779999999999988887643 45


Q ss_pred             eEEEEEecCCCEEEEEECCCeEEEEECCCCceE
Q 047260          718 FHSCVFHPSYSTLLVVGGISSLELWNMAENKSM  750 (784)
Q Consensus       718 I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~  750 (784)
                      +.+++|+|++++|++++.++.|.+||+.+++.+
T Consensus       297 ~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~  329 (349)
T 1jmx_B          297 YYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKV  329 (349)
T ss_dssp             CCEEEECSSSSCEEEESBSSEEEEEETTTTEEE
T ss_pred             ccceEECCCCCEEEEecCCCeEEEEecccccee
Confidence            789999999999999888899999999998776

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.78  E-value=1.3e-17  Score=200.59  Aligned_cols=262  Identities=11%  Similarity=0.117  Sum_probs=192.1

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCC-----eEEEEEccCCCEEEEEeCC---------CeE
Q 047260          508 SKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSV-----VTDVRFRPNSSQLATASVD---------KSV  573 (784)
Q Consensus       508 ~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~-----It~i~fspdg~~Latgs~D---------g~I  573 (784)
                      ....++.|+|||.+|+++  |+.|++||+.+++....+..|...     ...+.|+|||++|++++.+         +.+
T Consensus        17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~   94 (740)
T 4a5s_A           17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY   94 (740)
T ss_dssp             CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred             ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence            346689999999999886  999999999999988777777643     2448899999999999876         566


Q ss_pred             EEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCC-------------------
Q 047260          574 RLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGG-------------------  634 (784)
Q Consensus       574 ~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~-------------------  634 (784)
                      .+||+.+++  ...+..|...+..++|+|||..++++  .++.|++||+.++.........                   
T Consensus        95 ~~~d~~~~~--~~~l~~~~~~~~~~~~SPdG~~la~~--~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~  170 (740)
T 4a5s_A           95 DIYDLNKRQ--LITEERIPNNTQWVTWSPVGHKLAYV--WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVF  170 (740)
T ss_dssp             EEEETTTTE--ECCSSCCCTTEEEEEECSSTTCEEEE--ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTS
T ss_pred             EEEECCCCc--EEEcccCCCcceeeEECCCCCEEEEE--ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhc
Confidence            799999876  33456677889999999999966554  3789999999876655433211                   


Q ss_pred             --eeEEEEecCCCEEEEEECCC------------------------------------cEEEEECCC---Ce--EEEEEe
Q 047260          635 --TAQVRFQPRIGQLLAAASDK------------------------------------VVSIFDIET---DR--QTHSLQ  671 (784)
Q Consensus       635 --v~~v~fsp~~~~Ll~~s~Dg------------------------------------~I~IwDl~t---~~--~i~~l~  671 (784)
                        ...+.|+|||+.|+.+..|.                                    .|++||+.+   ++  ....+.
T Consensus       171 ~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~  250 (740)
T 4a5s_A          171 SAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQIT  250 (740)
T ss_dssp             SSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEEC
T ss_pred             CCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEec
Confidence              12488999999998875321                                    588899988   73  223343


Q ss_pred             ------CCCCCEEEEEEcCCCCEEEEEe---CC--eEEEEeCCCCc----eE--EEe--ccCCCceE-----EEEEecCC
Q 047260          672 ------GHAELVNYICWDTNGDYLASVS---QN--LVKVWSMASGE----CI--QEL--SSNGNQFH-----SCVFHPSY  727 (784)
Q Consensus       672 ------~h~~~V~sl~~spdg~~Lasgs---dd--~I~IwDl~t~~----~i--~~l--~~~~~~I~-----sl~fspdg  727 (784)
                            +|...+..++|+|||++++...   .+  .|++||+.+++    |.  ..+  ..+...|.     ..+|+|||
T Consensus       251 ~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG  330 (740)
T 4a5s_A          251 APASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDG  330 (740)
T ss_dssp             CCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTS
T ss_pred             CCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCC
Confidence                  3777899999999999766553   12  79999999887    32  122  33444444     78999999


Q ss_pred             CEEE-EEECC-C--eEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEEC
Q 047260          728 STLL-VVGGI-S--SLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASH  776 (784)
Q Consensus       728 ~~L~-s~s~d-g--~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs~  776 (784)
                      +.|+ ..+.. |  .|++||+.++....+......|..+.+ +|++.|+..+.
T Consensus       331 ~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~~~~-~d~~~i~f~~~  382 (740)
T 4a5s_A          331 NSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEA-LTSDYLYYISN  382 (740)
T ss_dssp             SEEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEEEEE-ECSSEEEEEES
T ss_pred             CEEEEEEEcCCCceEEEEEECCCCceEecccCCEEEEEEEE-EeCCEEEEEEe
Confidence            9877 66543 3  799999998888777766666766543 44665554443

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.77  E-value=1.3e-17  Score=187.87  Aligned_cols=210  Identities=12%  Similarity=0.183  Sum_probs=159.7

Q ss_pred             CeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCC----------ccee----eeccCCCCC
Q 047260          529 RKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANP----------NFCS----QAYTGHSSP  594 (784)
Q Consensus       529 g~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~----------~~~~----~~~~~h~~~  594 (784)
                      +.|++|+... .      .....++.+++++++.+|++++.|+ |+||+....          ....    .....+...
T Consensus        23 ~~vri~~~~~-~------~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (434)
T 2oit_A           23 KKVRIFDSPE-E------LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFP   94 (434)
T ss_dssp             CEEECSCCCS-S------CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSC
T ss_pred             eeEEecCCcc-c------cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCc
Confidence            4688876531 1      1344688999999999999999888 888865310          0000    011235678


Q ss_pred             eEEEEEcCCCCcEEE---EEeCCCeEEEEeCCCC--------e---eEEe---ecCCeeEEEEecC-CCEEEEEECCCcE
Q 047260          595 IMSLDFHPKKTDLFC---FCDNDNEIQYWSINPF--------L---CTHI---TKGGTAQVRFQPR-IGQLLAAASDKVV  656 (784)
Q Consensus       595 V~sl~~sp~~~~ll~---sgs~dg~I~iwDl~~~--------~---~~~~---~~~~v~~v~fsp~-~~~Ll~~s~Dg~I  656 (784)
                      |.+++|+|++..+++   +++.|+.|++||+++.        +   .+..   +...+.+++|+|+ +..|++++.||.|
T Consensus        95 v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v  174 (434)
T 2oit_A           95 IHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSI  174 (434)
T ss_dssp             EEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCE
T ss_pred             ccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeE
Confidence            999999999986655   7788999999998643        1   1232   3578999999998 7889999999999


Q ss_pred             EEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCC-------CceEEEEEecCCC
Q 047260          657 SIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNG-------NQFHSCVFHPSYS  728 (784)
Q Consensus       657 ~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~-------~~I~sl~fspdg~  728 (784)
                      ++||++++..+....+|...|.+++|+|+|++|++++.+ .|++||++ ++....+..+.       ..|.++.|++++.
T Consensus       175 ~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~  253 (434)
T 2oit_A          175 AVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYV  253 (434)
T ss_dssp             EEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTE
T ss_pred             EEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCce
Confidence            999999998777777889999999999999999999965 99999998 66666665432       2789999999887


Q ss_pred             EEEEEE-CCC------eEEEEECCCC
Q 047260          729 TLLVVG-GIS------SLELWNMAEN  747 (784)
Q Consensus       729 ~L~s~s-~dg------~I~Iwdl~~~  747 (784)
                      ++++.+ .+|      .+++|++...
T Consensus       254 ~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          254 FAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             EEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             EEEEEccCCCccCCCCceEEEEeccC
Confidence            765543 343      3899999865

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.75  E-value=1.4e-16  Score=188.16  Aligned_cols=279  Identities=12%  Similarity=0.097  Sum_probs=198.5

Q ss_pred             EeecCCCceEEEEEcCCCCEEEEE--eCCCeEEEEECCCCceeeecCCCCCCeE---------EEEEc--cCCCE-EEEE
Q 047260          502 CIRSRNSKVTCCHFSSDGKLLASS--GHDRKVVLWNMDTLQTESTPEDHKSVVT---------DVRFR--PNSSQ-LATA  567 (784)
Q Consensus       502 ~l~~H~~~V~~l~fspdg~~Lasg--s~Dg~I~IWd~~t~~~~~~l~~h~~~It---------~i~fs--pdg~~-Latg  567 (784)
                      .+.+|...|..++|++++-++++.  +.++...||....+.....+..|...+.         ...|+  ||++. |+.+
T Consensus        18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~   97 (662)
T 3azo_A           18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT   97 (662)
T ss_dssp             HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred             HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence            356789999999999887666766  5588999999655555667777776666         66676  99998 7766


Q ss_pred             eC-CCeEEEEcCC--C-CcceeeeccC-----CCCCeEEEEEcCCCCcEEEEEeCC---------CeEEEEeCCC-----
Q 047260          568 SV-DKSVRLWDAA--N-PNFCSQAYTG-----HSSPIMSLDFHPKKTDLFCFCDND---------NEIQYWSINP-----  624 (784)
Q Consensus       568 s~-Dg~I~IWdl~--~-~~~~~~~~~~-----h~~~V~sl~~sp~~~~ll~sgs~d---------g~I~iwDl~~-----  624 (784)
                      +. +..|.+|++.  . +.  ...+..     |...+.+++|+|++..++++....         ..|++||+.+     
T Consensus        98 ~~~~~~l~~~~~~~~g~~~--~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  175 (662)
T 3azo_A           98 HFGDQRLYAFEPDAPGGAV--PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAAD  175 (662)
T ss_dssp             BTTTCCEEEECTTSTTCCC--CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTC
T ss_pred             ECCCCeEEEEcCCCCCCCC--CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCcccc
Confidence            54 5667777775  2 33  233333     567789999999998666555421         5899999987     


Q ss_pred             -CeeEEee-c--CCeeEEEEecCCCEEEEEECC--------CcEEEEECC-CC---eEEEEEeCCCCCEEEEEEcCCCCE
Q 047260          625 -FLCTHIT-K--GGTAQVRFQPRIGQLLAAASD--------KVVSIFDIE-TD---RQTHSLQGHAELVNYICWDTNGDY  688 (784)
Q Consensus       625 -~~~~~~~-~--~~v~~v~fsp~~~~Ll~~s~D--------g~I~IwDl~-t~---~~i~~l~~h~~~V~sl~~spdg~~  688 (784)
                       ....... .  ..+..++|+|+|++|+.++.+        ..|++||+. ++   +.......+...+..++|+|||++
T Consensus       176 ~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l  255 (662)
T 3azo_A          176 RSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSL  255 (662)
T ss_dssp             GGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCE
T ss_pred             CCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeE
Confidence             5554444 3  445678899999999888754        379999999 56   444444556788999999999997


Q ss_pred             EEEEeCC---eEEEEeCCCCceEEEeccCCCc--------eEEEEEecCCCEEEEEECCCeEEEE--ECCCCceEEeccc
Q 047260          689 LASVSQN---LVKVWSMASGECIQELSSNGNQ--------FHSCVFHPSYSTLLVVGGISSLELW--NMAENKSMTIAAH  755 (784)
Q Consensus       689 Lasgsdd---~I~IwDl~t~~~i~~l~~~~~~--------I~sl~fspdg~~L~s~s~dg~I~Iw--dl~~~~~~~~~~h  755 (784)
                      ++++..+   .|.+||+.+++.......+...        +..++|+|++..++++.. +.++||  |+.+++...+..|
T Consensus       256 ~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~~~l~~~  334 (662)
T 3azo_A          256 IVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGELVDAAGP  334 (662)
T ss_dssp             EEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTEEEECCSS
T ss_pred             EEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCcEEEecCC
Confidence            7776643   6788887777654433322221        467899999999999888 988888  6667776677778


Q ss_pred             CCceEEE-EEeCCCCEEEEEECCCcEEEe
Q 047260          756 ENIISAL-AQSPVTGMVASASHDSSVKLW  783 (784)
Q Consensus       756 ~~~V~sl-afspdg~~LaSgs~DG~V~IW  783 (784)
                      ...+..+ +++.+.-++++++.+....||
T Consensus       335 ~~~~~~~~s~~~~~~~~~~~~~~~~~~i~  363 (662)
T 3azo_A          335 WTEWAATLTVSGTRAVGVAASPRTAYEVV  363 (662)
T ss_dssp             CCEEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred             CCeEEEEEecCCCEEEEEEcCCCCCCEEE
Confidence            8888877 554433344555666555555

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.75  E-value=3.3e-16  Score=172.01  Aligned_cols=260  Identities=11%  Similarity=0.079  Sum_probs=191.6

Q ss_pred             EeecCCCceEEEEEcCCCCEEEEEeC----------CCeEEEEECCCCceeeecCCC------CCCeEEEEEccCCCEEE
Q 047260          502 CIRSRNSKVTCCHFSSDGKLLASSGH----------DRKVVLWNMDTLQTESTPEDH------KSVVTDVRFRPNSSQLA  565 (784)
Q Consensus       502 ~l~~H~~~V~~l~fspdg~~Lasgs~----------Dg~I~IWd~~t~~~~~~l~~h------~~~It~i~fspdg~~La  565 (784)
                      .+..+..+  .++|+|||++|+++..          ++.|.+||..+++.+..+...      ......++|+|+|++|+
T Consensus        46 ~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~  123 (361)
T 2oiz_A           46 MVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIV  123 (361)
T ss_dssp             EEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEE
T ss_pred             EecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEE
Confidence            34444444  8999999999998863          678999999999888777532      34567899999999999


Q ss_pred             EEeC--CCeEEEEcCCCCcceeee-ccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCC-CeeEEe------ec--C
Q 047260          566 TASV--DKSVRLWDAANPNFCSQA-YTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINP-FLCTHI------TK--G  633 (784)
Q Consensus       566 tgs~--Dg~I~IWdl~~~~~~~~~-~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~-~~~~~~------~~--~  633 (784)
                      ++..  +++|.+||+.+.+ .... +..  .....+.+.|++...+++.+.||.+.+|++.. .+....      +.  .
T Consensus       124 v~n~~~~~~v~v~d~~~~~-~~~~~i~~--~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~  200 (361)
T 2oiz_A          124 LQNASPATSIGIVDVAKGD-YVEDVTAA--AGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKD  200 (361)
T ss_dssp             EEEESSSEEEEEEETTTTE-EEEEEGGG--TTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTT
T ss_pred             EECCCCCCeEEEEECCCCc-EEEEEecC--CCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCC
Confidence            9874  5899999999876 3333 332  12234667888767888888999999999864 333311      11  1


Q ss_pred             CeeEEEEecCCCEEEEEECCCcEEEEECCCCe--EEEEEeCC------C----CCEEEEEEcCCCCEEEEEeC-------
Q 047260          634 GTAQVRFQPRIGQLLAAASDKVVSIFDIETDR--QTHSLQGH------A----ELVNYICWDTNGDYLASVSQ-------  694 (784)
Q Consensus       634 ~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~--~i~~l~~h------~----~~V~sl~~spdg~~Lasgsd-------  694 (784)
                      ....+.+.+++..++..+.++.|.++|+....  .+..+...      .    .....++|+|++..++++..       
T Consensus       201 ~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~  280 (361)
T 2oiz_A          201 DPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGT  280 (361)
T ss_dssp             SCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTC
T ss_pred             CceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCccc
Confidence            11223346777788888889999999987553  22222211      0    11112689999887776532       


Q ss_pred             -----CeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCC--ceEEe-cccCCceEEEEEeC
Q 047260          695 -----NLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAEN--KSMTI-AAHENIISALAQSP  766 (784)
Q Consensus       695 -----d~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~--~~~~~-~~h~~~V~slafsp  766 (784)
                           +.|.+||+.+++.+.++..+.  +..++|+|++++|++++. +.|.+||..++  +.+.. ..+......++++|
T Consensus       281 ~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p  357 (361)
T 2oiz_A          281 HKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHP  357 (361)
T ss_dssp             TTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECC
T ss_pred             ccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecC
Confidence                 389999999999999998876  899999999999998887 99999999999  87744 57778889999999


Q ss_pred             CCC
Q 047260          767 VTG  769 (784)
Q Consensus       767 dg~  769 (784)
                      +|+
T Consensus       358 ~G~  360 (361)
T 2oiz_A          358 VGG  360 (361)
T ss_dssp             CSC
T ss_pred             CCC
Confidence            985

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.74  E-value=9.3e-16  Score=184.31  Aligned_cols=262  Identities=13%  Similarity=0.092  Sum_probs=179.4

Q ss_pred             EEEEEcCCCCEEEEEeCC---------CeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCC
Q 047260          511 TCCHFSSDGKLLASSGHD---------RKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANP  581 (784)
Q Consensus       511 ~~l~fspdg~~Lasgs~D---------g~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~  581 (784)
                      ..+.|||||++|+.++.+         +.+.+||+.+++.. .+..|...+..++|+|||+.||.+. |+.|++||+.++
T Consensus        65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~  142 (740)
T 4a5s_A           65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNL  142 (740)
T ss_dssp             CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTS
T ss_pred             cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCC
Confidence            458899999999998876         56779999988764 4667888999999999999999984 689999999887


Q ss_pred             cceeeeccCCCCCe-----------------EEEEEcCCCCcEEEEEeCCC-----------------------------
Q 047260          582 NFCSQAYTGHSSPI-----------------MSLDFHPKKTDLFCFCDNDN-----------------------------  615 (784)
Q Consensus       582 ~~~~~~~~~h~~~V-----------------~sl~~sp~~~~ll~sgs~dg-----------------------------  615 (784)
                      .....+..++...+                 ..+.|+|||..+++...+++                             
T Consensus       143 ~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G  222 (740)
T 4a5s_A          143 PSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAG  222 (740)
T ss_dssp             CCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTT
T ss_pred             ceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCc
Confidence            64333333433323                 35899999997666543222                             


Q ss_pred             ------eEEEEeCCC---C---eeEEee--------cCCeeEEEEecCCCEEEEEEC----CCcEEEEECCCCe----EE
Q 047260          616 ------EIQYWSINP---F---LCTHIT--------KGGTAQVRFQPRIGQLLAAAS----DKVVSIFDIETDR----QT  667 (784)
Q Consensus       616 ------~I~iwDl~~---~---~~~~~~--------~~~v~~v~fsp~~~~Ll~~s~----Dg~I~IwDl~t~~----~i  667 (784)
                            .|++||+.+   .   ......        ...+..++|+|+++.++....    +..|.+||+.+++    +.
T Consensus       223 ~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~  302 (740)
T 4a5s_A          223 AVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCL  302 (740)
T ss_dssp             SCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEEC
T ss_pred             CcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCcccccee
Confidence                  588899987   6   333332        234678899999986665543    2479999998876    21


Q ss_pred             --EEE--eCCCCCEE-----EEEEcCCCCEEE-EEeC--C--eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEE
Q 047260          668 --HSL--QGHAELVN-----YICWDTNGDYLA-SVSQ--N--LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVV  733 (784)
Q Consensus       668 --~~l--~~h~~~V~-----sl~~spdg~~La-sgsd--d--~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~  733 (784)
                        ..+  ..|...|.     .+.|+|||+.|+ ..++  +  .|++||+.++++. .+......+..+.. ++++.|+..
T Consensus       303 ~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~-~lT~g~~~v~~~~~-~d~~~i~f~  380 (740)
T 4a5s_A          303 VARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT-FITKGTWEVIGIEA-LTSDYLYYI  380 (740)
T ss_dssp             GGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE-ESCCSSSCEEEEEE-ECSSEEEEE
T ss_pred             EEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE-ecccCCEEEEEEEE-EeCCEEEEE
Confidence              112  34555444     788999999876 6652  3  8999999877654 44444455555543 446666666


Q ss_pred             ECC-----C--eEEEEECCCCceE-Eecc----cCCceEEEEEeCCCCEEEEEEC
Q 047260          734 GGI-----S--SLELWNMAENKSM-TIAA----HENIISALAQSPVTGMVASASH  776 (784)
Q Consensus       734 s~d-----g--~I~Iwdl~~~~~~-~~~~----h~~~V~slafspdg~~LaSgs~  776 (784)
                      +..     +  .|+..++..+... .+..    ....+..+.|+|++++++....
T Consensus       381 ~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s  435 (740)
T 4a5s_A          381 SNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCS  435 (740)
T ss_dssp             ESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEEC
T ss_pred             EecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeC
Confidence            554     2  4555566554433 2321    2356889999999997765543

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.73  E-value=1.6e-15  Score=163.94  Aligned_cols=238  Identities=13%  Similarity=0.092  Sum_probs=182.4

Q ss_pred             CCceEEEEEcCCCCEEEEEeCC------------------------CeEEEEECCCCceeeecC-CCCCCeEEEEEccCC
Q 047260          507 NSKVTCCHFSSDGKLLASSGHD------------------------RKVVLWNMDTLQTESTPE-DHKSVVTDVRFRPNS  561 (784)
Q Consensus       507 ~~~V~~l~fspdg~~Lasgs~D------------------------g~I~IWd~~t~~~~~~l~-~h~~~It~i~fspdg  561 (784)
                      -+.|.+++++++|+++++...+                        +.|.+||..+++.+..+. .+-.....|++++++
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            3569999999999999888777                        479999999888877664 445678999999999


Q ss_pred             CEEEEEeCCCeEEEEcCCCCcceeeec---------cCCCCCeEEEEEcCCCCcEEEEEe-CCCeEEEEeCCCCeeEEee
Q 047260          562 SQLATASVDKSVRLWDAANPNFCSQAY---------TGHSSPIMSLDFHPKKTDLFCFCD-NDNEIQYWSINPFLCTHIT  631 (784)
Q Consensus       562 ~~Latgs~Dg~I~IWdl~~~~~~~~~~---------~~h~~~V~sl~~sp~~~~ll~sgs-~dg~I~iwDl~~~~~~~~~  631 (784)
                      +++++...++.|++||..........+         .++...+..|+++|++..++++.+ .++.|++||.+ +..+..+
T Consensus       103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~-g~~~~~~  181 (329)
T 3fvz_A          103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS-GKFVTQW  181 (329)
T ss_dssp             CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT-SCEEEEE
T ss_pred             CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC-CCEEEEe
Confidence            988888889999999987542123333         244557899999995455777775 69999999954 4444333


Q ss_pred             c-------------CCeeEEEEecCCCEEEEEE-CCCcEEEEECCCCeEEEEEe--CCCCCEEEEEEcCCCCEEEEEe--
Q 047260          632 K-------------GGTAQVRFQPRIGQLLAAA-SDKVVSIFDIETDRQTHSLQ--GHAELVNYICWDTNGDYLASVS--  693 (784)
Q Consensus       632 ~-------------~~v~~v~fsp~~~~Ll~~s-~Dg~I~IwDl~t~~~i~~l~--~h~~~V~sl~~spdg~~Lasgs--  693 (784)
                      .             .....++++|+++.|+++. .++.|++||..+++.+..+.  .+...+..++|+| +..+++.+  
T Consensus       182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~  260 (329)
T 3fvz_A          182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKP  260 (329)
T ss_dssp             CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCC
T ss_pred             ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCE
Confidence            2             2267899999955555555 57899999999898888874  3566889999999 43333322  


Q ss_pred             -----CC-eEEEEeCCCCceEEEec---cCCCceEEEEEecCCCEEEEEECCCeEEEEECCC
Q 047260          694 -----QN-LVKVWSMASGECIQELS---SNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAE  746 (784)
Q Consensus       694 -----dd-~I~IwDl~t~~~i~~l~---~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~  746 (784)
                           .+ .|++||+.+++.+..+.   .+...+..++++|++..+++...++.|++|++..
T Consensus       261 ~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          261 YFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             CTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred             EeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence                 22 89999999999998884   5566789999999997667777788999999764

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.73  E-value=1.3e-15  Score=164.35  Aligned_cols=253  Identities=11%  Similarity=0.129  Sum_probs=178.3

Q ss_pred             CceEEEEEcCCCCEEEEEe---------CCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCC---C--eE
Q 047260          508 SKVTCCHFSSDGKLLASSG---------HDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVD---K--SV  573 (784)
Q Consensus       508 ~~V~~l~fspdg~~Lasgs---------~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~D---g--~I  573 (784)
                      ..|..+.|  ||++|+...         .++.|.+||+.+++... +    ..+.+++|+|||++|+.++.+   +  .|
T Consensus        15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l   87 (347)
T 2gop_A           15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEI   87 (347)
T ss_dssp             CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEE
T ss_pred             EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceE
Confidence            34677777  888887642         25679999999876543 3    568899999999999988754   3  37


Q ss_pred             EEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeC--------------------------CCeEEEEeCCCCee
Q 047260          574 RLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDN--------------------------DNEIQYWSINPFLC  627 (784)
Q Consensus       574 ~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~--------------------------dg~I~iwDl~~~~~  627 (784)
                      .+||+.+++ ....... .. +..+.|+|++..+++++..                          ...|++||+.+.+.
T Consensus        88 ~~~~~~~g~-~~~l~~~-~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~  164 (347)
T 2gop_A           88 WVADLETLS-SKKILEA-KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEV  164 (347)
T ss_dssp             EEEETTTTE-EEEEEEE-SE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEE
T ss_pred             EEEECCCCc-eEEEEcC-CC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeE
Confidence            788887755 3333322 33 9999999999877766543                          35799999987765


Q ss_pred             -EEe-ecCCeeEEEEecCCCEEEEEECCC-------cEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeC----
Q 047260          628 -THI-TKGGTAQVRFQPRIGQLLAAASDK-------VVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQ----  694 (784)
Q Consensus       628 -~~~-~~~~v~~v~fsp~~~~Ll~~s~Dg-------~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsd----  694 (784)
                       ... .. .+..+.|+|++ .++++..+.       ...||.+.+++. ..+..+ ..+..+  +|+|++|+.++.    
T Consensus       165 ~~~l~~~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~~~-~~~~~~--spdg~~l~~~~~~~~~  238 (347)
T 2gop_A          165 IEEFEKP-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMFEK-VSFYAV--DSDGERILLYGKPEKK  238 (347)
T ss_dssp             EEEEEEE-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-EEEEEE-ESEEEE--EECSSCEEEEECCSSS
T ss_pred             EeeecCC-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce-EEeccC-cceeeE--CCCCCEEEEEEccccC
Confidence             211 13 77889999999 766665542       334444435543 334334 455544  899998877662    


Q ss_pred             -----CeEEEEeCCCCceEEEeccCCCceEE-EEEecCCCEEEEEECCCeEEEEECCCCceEEecccCCceEEEEEeCCC
Q 047260          695 -----NLVKVWSMASGECIQELSSNGNQFHS-CVFHPSYSTLLVVGGISSLELWNMAENKSMTIAAHENIISALAQSPVT  768 (784)
Q Consensus       695 -----d~I~IwDl~t~~~i~~l~~~~~~I~s-l~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~~~h~~~V~slafspdg  768 (784)
                           ..|.+||  +++.......+...+.. +.|+ ++ .+++++.++.++|| +.+++...+..+...|.+++|++  
T Consensus       239 ~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~s~--  311 (347)
T 2gop_A          239 YMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIAKGRHWIMGFDVDE--  311 (347)
T ss_dssp             CCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEECSSSEEEEEEESS--
T ss_pred             CccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEecCCCeEEeeeeeC--
Confidence                 2688888  55554444455667776 8999 88 88888899999999 87666666666788899999999  


Q ss_pred             CEEEEEECCCcE-EEe
Q 047260          769 GMVASASHDSSV-KLW  783 (784)
Q Consensus       769 ~~LaSgs~DG~V-~IW  783 (784)
                      .++++++.++.. .||
T Consensus       312 ~~~~~~~~~~~~~~l~  327 (347)
T 2gop_A          312 IVVYLKETATRLRELF  327 (347)
T ss_dssp             SEEEEEECSSSCCEEE
T ss_pred             cEEEEEcCCCChHHhe
Confidence            688888777654 555

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.72  E-value=1.3e-15  Score=167.29  Aligned_cols=260  Identities=10%  Similarity=0.079  Sum_probs=185.0

Q ss_pred             CCCEEEEEe------CCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeC----------CCeEEEEcCCCC
Q 047260          518 DGKLLASSG------HDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASV----------DKSVRLWDAANP  581 (784)
Q Consensus       518 dg~~Lasgs------~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~----------Dg~I~IWdl~~~  581 (784)
                      +++++++..      .|+.|.+||..+++.+..+..+..+  .++|+|++++|++++.          ++.|.+||+.+.
T Consensus        14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~   91 (361)
T 2oiz_A           14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL   91 (361)
T ss_dssp             GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred             CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence            556665543      3679999999999998888776555  8999999999999873          678999999876


Q ss_pred             cceeeecc-C-----CCCCeEEEEEcCCCCcEEEEEeC-CCeEEEEeCCCCeeEEe-ec-CCeeEEEEecCC-CEEEEEE
Q 047260          582 NFCSQAYT-G-----HSSPIMSLDFHPKKTDLFCFCDN-DNEIQYWSINPFLCTHI-TK-GGTAQVRFQPRI-GQLLAAA  651 (784)
Q Consensus       582 ~~~~~~~~-~-----h~~~V~sl~~sp~~~~ll~sgs~-dg~I~iwDl~~~~~~~~-~~-~~v~~v~fsp~~-~~Ll~~s  651 (784)
                      +. ...+. .     +......++|+|++++++++... ++.|.+||+.+.+.+.. +. .....+.+.|++ ..+++.+
T Consensus        92 ~~-~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~  170 (361)
T 2oiz_A           92 TF-EKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTIC  170 (361)
T ss_dssp             CE-EEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEE
T ss_pred             cE-EEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEEC
Confidence            63 33322 1     23456789999999977777654 78999999999888766 54 233335677776 5677888


Q ss_pred             CCCcEEEEECCC-CeEEEEE------eCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEeCCCCc--eEEEeccCC------
Q 047260          652 SDKVVSIFDIET-DRQTHSL------QGHAELVNYICWDTNGDYLASVS-QNLVKVWSMASGE--CIQELSSNG------  715 (784)
Q Consensus       652 ~Dg~I~IwDl~t-~~~i~~l------~~h~~~V~sl~~spdg~~Lasgs-dd~I~IwDl~t~~--~i~~l~~~~------  715 (784)
                      .||.+.+|++.. ++.....      ..+..++ .+.+++++..++..+ ++.|.++|+....  .+..+....      
T Consensus       171 ~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~  249 (361)
T 2oiz_A          171 GDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAK  249 (361)
T ss_dssp             TTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHT
T ss_pred             CCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCcccccc
Confidence            899999999875 5544221      1122222 233456676666555 4499999997653  222222110      


Q ss_pred             ----CceEEEEEecCCCEEEEEEC-----------CCeEEEEECCCCceE-EecccCCceEEEEEeCCCCEEEEEECCCc
Q 047260          716 ----NQFHSCVFHPSYSTLLVVGG-----------ISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSS  779 (784)
Q Consensus       716 ----~~I~sl~fspdg~~L~s~s~-----------dg~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg~~LaSgs~DG~  779 (784)
                          .....++|+|+++.++++..           .+.|.+||+.+++.+ .+..+.  +.+++|+||+++|++++. +.
T Consensus       250 ~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~  326 (361)
T 2oiz_A          250 NWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GN  326 (361)
T ss_dssp             TCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SC
T ss_pred             ccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-Ce
Confidence                11123789999988887754           348999999999887 444554  999999999999998887 99


Q ss_pred             EEEeC
Q 047260          780 VKLWK  784 (784)
Q Consensus       780 V~IWd  784 (784)
                      |.|||
T Consensus       327 v~v~D  331 (361)
T 2oiz_A          327 VNVYD  331 (361)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99997

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.72  E-value=1.4e-14  Score=168.32  Aligned_cols=274  Identities=10%  Similarity=0.035  Sum_probs=203.9

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEECC--CCceeeecCCCCCCeEEEEEc----cCCCEEEEEeC-CCeEEEEcCCCC
Q 047260          509 KVTCCHFSSDGKLLASSGHDRKVVLWNMD--TLQTESTPEDHKSVVTDVRFR----PNSSQLATASV-DKSVRLWDAANP  581 (784)
Q Consensus       509 ~V~~l~fspdg~~Lasgs~Dg~I~IWd~~--t~~~~~~l~~h~~~It~i~fs----pdg~~Latgs~-Dg~I~IWdl~~~  581 (784)
                      .+.++.|+|||++|++++.|+.|.+||+.  +++.+..+.... ....++|+    |||+++++++. ++.|.|+|..+.
T Consensus       198 ~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~  276 (567)
T 1qks_A          198 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETL  276 (567)
T ss_dssp             CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTC
T ss_pred             CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCC
Confidence            46789999999999999999999999995  888888776533 46789999    69999888766 589999999887


Q ss_pred             cceeeeccC---------CCC-CeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEe--e--cCCeeEEEEecCCCEE
Q 047260          582 NFCSQAYTG---------HSS-PIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHI--T--KGGTAQVRFQPRIGQL  647 (784)
Q Consensus       582 ~~~~~~~~~---------h~~-~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~--~--~~~v~~v~fsp~~~~L  647 (784)
                      +.......+         |.. .+..+.+++++..+++....+|.|.++|.........  .  ......+.|+|+++++
T Consensus       277 ~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~  356 (567)
T 1qks_A          277 EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYF  356 (567)
T ss_dssp             CEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEE
T ss_pred             cEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEE
Confidence            643222111         222 6788999998888888888889999999986532221  1  2355678999999999


Q ss_pred             EEEEC-CCcEEEEECCCCeEEEEEeC-----CCCCEEEEEEcCCCC-EEEEEe--CCeEEEEeCCC-------CceEEEe
Q 047260          648 LAAAS-DKVVSIFDIETDRQTHSLQG-----HAELVNYICWDTNGD-YLASVS--QNLVKVWSMAS-------GECIQEL  711 (784)
Q Consensus       648 l~~s~-Dg~I~IwDl~t~~~i~~l~~-----h~~~V~sl~~spdg~-~Lasgs--dd~I~IwDl~t-------~~~i~~l  711 (784)
                      ++++. ++.|.++|+.+++.+..+..     |.+.-..+ ++|++. ++++..  ++.|.++|..+       .+.+.++
T Consensus       357 ~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i  435 (567)
T 1qks_A          357 ITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSF  435 (567)
T ss_dssp             EEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEE
T ss_pred             EEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEE
Confidence            88875 79999999999988777654     33222222 578744 444543  45999999988       6788888


Q ss_pred             ccCCCceEEEEEecCCCEEEEEEC-------CCeEEEEECCCC-----ce--EEec--------ccCCceEEEEEeCCCC
Q 047260          712 SSNGNQFHSCVFHPSYSTLLVVGG-------ISSLELWNMAEN-----KS--MTIA--------AHENIISALAQSPVTG  769 (784)
Q Consensus       712 ~~~~~~I~sl~fspdg~~L~s~s~-------dg~I~Iwdl~~~-----~~--~~~~--------~h~~~V~slafspdg~  769 (784)
                      ......-..+.++|+++++++...       .++|.+||+.+.     ..  ..+.        .....+..+.|+++|+
T Consensus       436 ~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~  515 (567)
T 1qks_A          436 PALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGT  515 (567)
T ss_dssp             ECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSS
T ss_pred             ecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCC
Confidence            765444456789999999998773       358999999876     21  1221        1245789999999999


Q ss_pred             EEEEEEC-----CCcEEEeC
Q 047260          770 MVASASH-----DSSVKLWK  784 (784)
Q Consensus       770 ~LaSgs~-----DG~V~IWd  784 (784)
                      .+..+..     ++.|.|+|
T Consensus       516 ~~~~s~~~~~~~~~~i~v~D  535 (567)
T 1qks_A          516 EVWFSVWNGKDQESALVVVD  535 (567)
T ss_dssp             EEEEEEECCTTSCCEEEEEE
T ss_pred             EEEEEeecCCCCCCcEEEEE
Confidence            7776643     68888875

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.72  E-value=6.9e-15  Score=154.58  Aligned_cols=236  Identities=10%  Similarity=0.123  Sum_probs=174.7

Q ss_pred             cCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecC------CCCCCeEEEEEc-cCCCEEEEEeC-CCeEEEE
Q 047260          505 SRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPE------DHKSVVTDVRFR-PNSSQLATASV-DKSVRLW  576 (784)
Q Consensus       505 ~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~------~h~~~It~i~fs-pdg~~Latgs~-Dg~I~IW  576 (784)
                      +|-..+.+++++++++++++...++.|.+||.+ ++.+..+.      .|...+.++++. +++.++++... ++.|++|
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~  105 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY  105 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence            355679999999999988888889999999987 55555553      244678999994 67766666543 8899999


Q ss_pred             cCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec-----CCeeEEEEecCCCEEEEEE
Q 047260          577 DAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK-----GGTAQVRFQPRIGQLLAAA  651 (784)
Q Consensus       577 dl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~-----~~v~~v~fsp~~~~Ll~~s  651 (784)
                      |. +++........+...+.++++++++. ++++...++.|.+||.... .+..+.     ..+..+++++++..+++..
T Consensus       106 d~-~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~g~-~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~  182 (286)
T 1q7f_A          106 NQ-YGQFVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQNGN-VLHKFGCSKHLEFPNGVVVNDKQEIFISDN  182 (286)
T ss_dssp             CT-TSCEEEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTTSC-EEEEEECTTTCSSEEEEEECSSSEEEEEEG
T ss_pred             CC-CCcEEEEecCccCCCceEEEEeCCCC-EEEEECCCCEEEEEcCCCC-EEEEeCCCCccCCcEEEEECCCCCEEEEEC
Confidence            94 44433222233456789999999986 7777777899999997643 333321     3578899999987655556


Q ss_pred             CCCcEEEEECCCCeEEEEEeCC--CCCEEEEEEcCCCCEEEEEeC-C-eEEEEeCCCCceEEEeccCC--CceEEEEEec
Q 047260          652 SDKVVSIFDIETDRQTHSLQGH--AELVNYICWDTNGDYLASVSQ-N-LVKVWSMASGECIQELSSNG--NQFHSCVFHP  725 (784)
Q Consensus       652 ~Dg~I~IwDl~t~~~i~~l~~h--~~~V~sl~~spdg~~Lasgsd-d-~I~IwDl~t~~~i~~l~~~~--~~I~sl~fsp  725 (784)
                      .++.|++||.. ++.+..+..+  ...+..++++++|+++++... + .|.+||. +++.+..+..+.  ..+.+++++|
T Consensus       183 ~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~  260 (286)
T 1q7f_A          183 RAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMD  260 (286)
T ss_dssp             GGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEET
T ss_pred             CCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECC
Confidence            68999999974 5566666543  367899999999998888764 4 8999995 566777776543  3477999999


Q ss_pred             CCCEEEEEECCCeEEEEECCCC
Q 047260          726 SYSTLLVVGGISSLELWNMAEN  747 (784)
Q Consensus       726 dg~~L~s~s~dg~I~Iwdl~~~  747 (784)
                      ++..+++ +.+++|++|++...
T Consensus       261 ~g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          261 DGSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             TTEEEEE-ETTTEEEEEECSCC
T ss_pred             CCcEEEE-CCCCeEEEEEcccc
Confidence            9975555 67899999998654

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.71  E-value=7.6e-16  Score=168.64  Aligned_cols=273  Identities=12%  Similarity=0.078  Sum_probs=181.5

Q ss_pred             cccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCCCEEE
Q 047260          444 SNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLA  523 (784)
Q Consensus       444 ~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~~La  523 (784)
                      ..+.++...++.++..++...+|...... +                       .......+|...+.+++|+|||+.|+
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~-g-----------------------~~~~lt~~~~~~~~~~~~spdg~~l~   96 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNT-Q-----------------------VATQLTEGRGDNTFGGFLSPDDDALF   96 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTT-C-----------------------EEEECCCSSCBCSSSCEECTTSSEEE
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCC-C-----------------------ceEEeeeCCCCCccceEEcCCCCEEE
Confidence            45677887777766557766666543221 0                       01112233444555678999999999


Q ss_pred             EEeCCCeEEEEECCCCceeeecCCCCCCeEEEEE--ccCCCEEEEEe----------------------CCCeEEEEcCC
Q 047260          524 SSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRF--RPNSSQLATAS----------------------VDKSVRLWDAA  579 (784)
Q Consensus       524 sgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~f--spdg~~Latgs----------------------~Dg~I~IWdl~  579 (784)
                      .++.++.|++||+.+++....+..+...+....|  ++++++++...                      .+..|.+||+.
T Consensus        97 ~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~  176 (388)
T 3pe7_A           97 YVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLK  176 (388)
T ss_dssp             EEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETT
T ss_pred             EEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECC
Confidence            9999999999999999887777666666654444  88999887532                      34689999999


Q ss_pred             CCcceeeeccCCCCCeEEEEEcC-CCCcEEEEEeC-----CCeEEEEeCCCCeeEEeecC----CeeEEEEecCCCEEEE
Q 047260          580 NPNFCSQAYTGHSSPIMSLDFHP-KKTDLFCFCDN-----DNEIQYWSINPFLCTHITKG----GTAQVRFQPRIGQLLA  649 (784)
Q Consensus       580 ~~~~~~~~~~~h~~~V~sl~~sp-~~~~ll~sgs~-----dg~I~iwDl~~~~~~~~~~~----~v~~v~fsp~~~~Ll~  649 (784)
                      +++  ...+..+...+..+.|+| ++..++++...     ...|.++|+...........    .+..+.|+|+++.|+.
T Consensus       177 ~g~--~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~  254 (388)
T 3pe7_A          177 TGE--STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVY  254 (388)
T ss_dssp             TCC--EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEE
T ss_pred             CCc--eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEE
Confidence            875  233345567789999999 88766555543     34788888876544433332    3567889999998766


Q ss_pred             EEC-CC----cEEEEECCCCeEEE--EEeCCCCC---EEEEEEcCCCCEEEEEe----------CCeEEEEeCCCCceEE
Q 047260          650 AAS-DK----VVSIFDIETDRQTH--SLQGHAEL---VNYICWDTNGDYLASVS----------QNLVKVWSMASGECIQ  709 (784)
Q Consensus       650 ~s~-Dg----~I~IwDl~t~~~i~--~l~~h~~~---V~sl~~spdg~~Lasgs----------dd~I~IwDl~t~~~i~  709 (784)
                      .+. ++    .|++||+.+++...  .+.++...   ...++|+|||+.|+...          +..|++||+.+++. .
T Consensus       255 ~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~  333 (388)
T 3pe7_A          255 VSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-H  333 (388)
T ss_dssp             EEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE-E
T ss_pred             EecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-E
Confidence            554 22    39999999886432  33221000   11136899999877532          22899999998765 3


Q ss_pred             EeccCCC-----------ceEEEEEecCCCEEEEEEC-CCeEEEEE
Q 047260          710 ELSSNGN-----------QFHSCVFHPSYSTLLVVGG-ISSLELWN  743 (784)
Q Consensus       710 ~l~~~~~-----------~I~sl~fspdg~~L~s~s~-dg~I~Iwd  743 (784)
                      .+..+..           .+.+++|+|+++.|+.++. ++...||.
T Consensus       334 ~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~  379 (388)
T 3pe7_A          334 RVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYL  379 (388)
T ss_dssp             EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEE
T ss_pred             EeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEE
Confidence            4544444           5788899999998887775 55555553

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.71  E-value=2.2e-15  Score=161.93  Aligned_cols=263  Identities=12%  Similarity=0.075  Sum_probs=188.4

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeee
Q 047260          508 SKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQA  587 (784)
Q Consensus       508 ~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~  587 (784)
                      ..|.+++|++++..++..+.++.+++|   .++....+..+...+.+++|++++++++++..++.|.+||.++++ ....
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~-~~~~   81 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKE-IKRP   81 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCC-EEEE
T ss_pred             cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCc-EEEE
Confidence            347788899988878777888899999   345566666777788999999999988888889999999998766 3333


Q ss_pred             ccCCCCCeEEEEEcCCCCcEEEEEeCC----CeEEEEeCCCCeeEEee-----cCCeeEEEEecCCCEEEEEEC------
Q 047260          588 YTGHSSPIMSLDFHPKKTDLFCFCDND----NEIQYWSINPFLCTHIT-----KGGTAQVRFQPRIGQLLAAAS------  652 (784)
Q Consensus       588 ~~~h~~~V~sl~~sp~~~~ll~sgs~d----g~I~iwDl~~~~~~~~~-----~~~v~~v~fsp~~~~Ll~~s~------  652 (784)
                      ...+...+.+++|++++. ++++...+    +.|.+||.++.......     ...+..++++|++..+++...      
T Consensus        82 ~~~~~~~~~~i~~~~dg~-l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~  160 (333)
T 2dg1_A           82 FVSHKANPAAIKIHKDGR-LFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNP  160 (333)
T ss_dssp             EECSSSSEEEEEECTTSC-EEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBC
T ss_pred             eeCCCCCcceEEECCCCc-EEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCC
Confidence            334567899999999986 66666555    68999999876554222     245788999999876665543      


Q ss_pred             CCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEeCCC-CceEEE--------eccCCCceEEE
Q 047260          653 DKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVS--QNLVKVWSMAS-GECIQE--------LSSNGNQFHSC  721 (784)
Q Consensus       653 Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgs--dd~I~IwDl~t-~~~i~~--------l~~~~~~I~sl  721 (784)
                      .+.|..+|..+++.... ..+...+..++|+|++++|+.+.  ++.|.+||+.+ +..+..        +..+ ..+..+
T Consensus       161 ~~~l~~~~~~~~~~~~~-~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i  238 (333)
T 2dg1_A          161 LGGVYYVSPDFRTVTPI-IQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSC  238 (333)
T ss_dssp             CEEEEEECTTSCCEEEE-EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEE
T ss_pred             CceEEEEeCCCCEEEEe-ecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCce
Confidence            35677777665544332 22334578999999998666554  45999999964 333321        1111 467889


Q ss_pred             EEecCCCEEEEEECCCeEEEEECCCCceEEecccCC------ceEEEEEeCCCCEEEEEECC
Q 047260          722 VFHPSYSTLLVVGGISSLELWNMAENKSMTIAAHEN------IISALAQSPVTGMVASASHD  777 (784)
Q Consensus       722 ~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~~~h~~------~V~slafspdg~~LaSgs~D  777 (784)
                      ++++++..+++...++.|.+||........+..+..      .+.+++|++|++.|+.++.+
T Consensus       239 ~~d~~G~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          239 CIDSDDNLYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             EEBTTCCEEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             EECCCCCEEEEEcCCCEEEEECCCCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence            999999877777778899999985433334433322      68999999998777666555

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.70  E-value=3.9e-15  Score=160.81  Aligned_cols=233  Identities=10%  Similarity=0.086  Sum_probs=175.2

Q ss_pred             CCCeEEEEEccCCCEEEEEeCC------------------------CeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCC
Q 047260          549 KSVVTDVRFRPNSSQLATASVD------------------------KSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKK  604 (784)
Q Consensus       549 ~~~It~i~fspdg~~Latgs~D------------------------g~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~  604 (784)
                      -+.|.+|+++++|+++++...+                        +.|.+||..+++.....-.++-..+..+++++++
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            4679999999999988888777                        4799999988774333223455678999999998


Q ss_pred             CcEEEEEeCCCeEEEEeCCCCe-eEEeec------------CCeeEEEEec-CCCEEEEEE-CCCcEEEEECCCCeEEEE
Q 047260          605 TDLFCFCDNDNEIQYWSINPFL-CTHITK------------GGTAQVRFQP-RIGQLLAAA-SDKVVSIFDIETDRQTHS  669 (784)
Q Consensus       605 ~~ll~sgs~dg~I~iwDl~~~~-~~~~~~------------~~v~~v~fsp-~~~~Ll~~s-~Dg~I~IwDl~t~~~i~~  669 (784)
                      . ++++...++.|++||.+... .+..+.            .....++++| ++..+++.+ .++.|++|| .+++.+..
T Consensus       103 ~-l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~  180 (329)
T 3fvz_A          103 N-YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQ  180 (329)
T ss_dssp             C-EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEE
T ss_pred             C-EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEE
Confidence            8 78888888999999987542 233221            2577899999 555555554 589999999 56777766


Q ss_pred             EeCC----------CCCEEEEEEcCC-CCEEEEEeCC-eEEEEeCCCCceEEEec--cCCCceEEEEEecCCCEEEEEE-
Q 047260          670 LQGH----------AELVNYICWDTN-GDYLASVSQN-LVKVWSMASGECIQELS--SNGNQFHSCVFHPSYSTLLVVG-  734 (784)
Q Consensus       670 l~~h----------~~~V~sl~~spd-g~~Lasgsdd-~I~IwDl~t~~~i~~l~--~~~~~I~sl~fspdg~~L~s~s-  734 (784)
                      +...          ......|+++|+ +.++++...+ .|++||..+++.+..+.  .+...+..++|+| +..+.+.+ 
T Consensus       181 ~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~  259 (329)
T 3fvz_A          181 WGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGK  259 (329)
T ss_dssp             ECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECC
T ss_pred             eccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCC
Confidence            6422          234889999998 5655555544 99999999899988884  3556788999999 32222222 


Q ss_pred             ------CCCeEEEEECCCCceEEec----ccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          735 ------GISSLELWNMAENKSMTIA----AHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       735 ------~dg~I~Iwdl~~~~~~~~~----~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                            .+..|++||+.+++.+...    .+...+.+|+++|+|.++++...+++|++|+
T Consensus       260 ~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~  319 (329)
T 3fvz_A          260 PYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFT  319 (329)
T ss_dssp             CCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEE
T ss_pred             EEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEe
Confidence                  2348999999999888553    5677899999999998888888899999985

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.70  E-value=1.6e-14  Score=151.82  Aligned_cols=232  Identities=11%  Similarity=0.122  Sum_probs=170.7

Q ss_pred             CCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeecc------CCCCCeEEEEEcCCCCcEEEEEeC-CCeEEE
Q 047260          547 DHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYT------GHSSPIMSLDFHPKKTDLFCFCDN-DNEIQY  619 (784)
Q Consensus       547 ~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~------~h~~~V~sl~~sp~~~~ll~sgs~-dg~I~i  619 (784)
                      ++-..+.+++++++++++++...++.|.+||... + ....+.      ++...+.++++.+.+..++++... ++.|++
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g-~-~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~  104 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEG-R-FKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI  104 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTS-C-EEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCCC-c-EEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence            4556789999999999888888899999999873 3 233222      244578999995333446666543 889999


Q ss_pred             EeCCCCeeEEeec----CCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEe--CCCCCEEEEEEcCCCCEEEEEe
Q 047260          620 WSINPFLCTHITK----GGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQ--GHAELVNYICWDTNGDYLASVS  693 (784)
Q Consensus       620 wDl~~~~~~~~~~----~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~--~h~~~V~sl~~spdg~~Lasgs  693 (784)
                      ||.. ...+..+.    ..+..+++++++..+++...++.|.+||.. ++.+..+.  .+...+..++++++|+++++..
T Consensus       105 ~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~  182 (286)
T 1q7f_A          105 YNQY-GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDN  182 (286)
T ss_dssp             ECTT-SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEG
T ss_pred             ECCC-CcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEEC
Confidence            9954 44444432    357889999998866665668999999964 55555554  3456789999999999777766


Q ss_pred             -CCeEEEEeCCCCceEEEeccC--CCceEEEEEecCCCEEEEEECCC-eEEEEECCCCceEEecccC--CceEEEEEeCC
Q 047260          694 -QNLVKVWSMASGECIQELSSN--GNQFHSCVFHPSYSTLLVVGGIS-SLELWNMAENKSMTIAAHE--NIISALAQSPV  767 (784)
Q Consensus       694 -dd~I~IwDl~t~~~i~~l~~~--~~~I~sl~fspdg~~L~s~s~dg-~I~Iwdl~~~~~~~~~~h~--~~V~slafspd  767 (784)
                       ++.|++||. +++.+..+..+  ...+..+++++++..+++...++ .|.+||........+..+.  ..+.+++++|+
T Consensus       183 ~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~  261 (286)
T 1q7f_A          183 RAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDD  261 (286)
T ss_dssp             GGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETT
T ss_pred             CCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcceeEEECCC
Confidence             459999997 55666677544  25788999999998777777776 9999996544333444333  34789999999


Q ss_pred             CCEEEEEECCCcEEEeC
Q 047260          768 TGMVASASHDSSVKLWK  784 (784)
Q Consensus       768 g~~LaSgs~DG~V~IWd  784 (784)
                      ++++++ +.|++|+||+
T Consensus       262 g~l~vs-~~~~~v~v~~  277 (286)
T 1q7f_A          262 GSVVLA-SKDYRLYIYR  277 (286)
T ss_dssp             TEEEEE-ETTTEEEEEE
T ss_pred             CcEEEE-CCCCeEEEEE
Confidence            987776 6799999995

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.69  E-value=9.8e-14  Score=148.95  Aligned_cols=242  Identities=14%  Similarity=0.117  Sum_probs=174.6

Q ss_pred             EeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCC----CeEEE
Q 047260          500 VGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVD----KSVRL  575 (784)
Q Consensus       500 i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~D----g~I~I  575 (784)
                      +..+..+...+.+++|+++|++++++..++.|.+||.++++.......+...+.+++|+++++++++...+    +.|.+
T Consensus        37 ~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~  116 (333)
T 2dg1_A           37 WLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFA  116 (333)
T ss_dssp             EEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEE
T ss_pred             eEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEE
Confidence            34456677788999999999988888889999999999887665544567789999999999888877666    68999


Q ss_pred             EcCCCCcceeeec--cCCCCCeEEEEEcCCCCcEEEEEeC------CCeEEEEeCCCCeeEEe--ecCCeeEEEEecCCC
Q 047260          576 WDAANPNFCSQAY--TGHSSPIMSLDFHPKKTDLFCFCDN------DNEIQYWSINPFLCTHI--TKGGTAQVRFQPRIG  645 (784)
Q Consensus       576 Wdl~~~~~~~~~~--~~h~~~V~sl~~sp~~~~ll~sgs~------dg~I~iwDl~~~~~~~~--~~~~v~~v~fsp~~~  645 (784)
                      ||.++.... ..+  ..+...+.+++++|++. ++++...      .+.|..+|..+.+....  ....+..++|+|+++
T Consensus       117 ~d~~~~~~~-~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~  194 (333)
T 2dg1_A          117 ATENGDNLQ-DIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEK  194 (333)
T ss_dssp             ECTTSCSCE-EEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSS
T ss_pred             EeCCCCEEE-EEEccCccCCcccceEECCCCC-EEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCC
Confidence            999876532 122  13446789999999986 5555443      35677777665433322  224577899999998


Q ss_pred             EEEEEEC-CCcEEEEECCC-CeEEEE--------EeCCCCCEEEEEEcCCCCEEEEEeC-CeEEEEeCCCCceEEEeccC
Q 047260          646 QLLAAAS-DKVVSIFDIET-DRQTHS--------LQGHAELVNYICWDTNGDYLASVSQ-NLVKVWSMASGECIQELSSN  714 (784)
Q Consensus       646 ~Ll~~s~-Dg~I~IwDl~t-~~~i~~--------l~~h~~~V~sl~~spdg~~Lasgsd-d~I~IwDl~t~~~i~~l~~~  714 (784)
                      .++++.. ++.|.+||+.+ +..+..        +.++ ..+..++++++|+++++... +.|.+||. +++.+..+..+
T Consensus       195 ~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~  272 (333)
T 2dg1_A          195 VLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIP  272 (333)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECT
T ss_pred             EEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcC
Confidence            7766654 78999999964 332211        1122 46788999999998887765 58999998 56777777554


Q ss_pred             CC------ceEEEEEecCCCEEEEEECCC------eEEEEECC
Q 047260          715 GN------QFHSCVFHPSYSTLLVVGGIS------SLELWNMA  745 (784)
Q Consensus       715 ~~------~I~sl~fspdg~~L~s~s~dg------~I~Iwdl~  745 (784)
                      ..      .+.+++|+|++..|++++.++      .|..+++.
T Consensus       273 ~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~~  315 (333)
T 2dg1_A          273 GRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGF  315 (333)
T ss_dssp             TGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred             CCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEecc
Confidence            33      688999999988887776653      45555544

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.69  E-value=2.8e-13  Score=142.03  Aligned_cols=271  Identities=9%  Similarity=-0.008  Sum_probs=192.6

Q ss_pred             eecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeee-cCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCC
Q 047260          503 IRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTEST-PEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANP  581 (784)
Q Consensus       503 l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~-l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~  581 (784)
                      +..+...+.+++++++|+++++...++.|.+||.. ++.... +..+...+.++++.+++.++++...++.|..||.. +
T Consensus        10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g   87 (299)
T 2z2n_A           10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-G   87 (299)
T ss_dssp             CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred             CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-C
Confidence            34456789999999999977776668899999988 554332 23355789999999999888877778899999986 3


Q ss_pred             cceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEe-e---cCCeeEEEEecCCCEEEEEECCCcEE
Q 047260          582 NFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHI-T---KGGTAQVRFQPRIGQLLAAASDKVVS  657 (784)
Q Consensus       582 ~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~-~---~~~v~~v~fsp~~~~Ll~~s~Dg~I~  657 (784)
                      .............+.++++.+++. ++++...++.|.+||.. ...... .   ...+..+++.+++..+++...++.|.
T Consensus        88 ~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~  165 (299)
T 2z2n_A           88 IIKEYTLPNPDSAPYGITEGPNGD-IWFTEMNGNRIGRITDD-GKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIG  165 (299)
T ss_dssp             CEEEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEE
T ss_pred             cEEEEeCCCcCCCceeeEECCCCC-EEEEecCCceEEEECCC-CCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEE
Confidence            322222223456789999999875 66666678899999984 333222 2   24578899999986666555578999


Q ss_pred             EEECCCCeEEEE-EeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEeCCCCceEEE-eccCCCceEEEEEecCCCEEEEEE
Q 047260          658 IFDIETDRQTHS-LQGHAELVNYICWDTNGDYLASVS-QNLVKVWSMASGECIQE-LSSNGNQFHSCVFHPSYSTLLVVG  734 (784)
Q Consensus       658 IwDl~t~~~i~~-l~~h~~~V~sl~~spdg~~Lasgs-dd~I~IwDl~t~~~i~~-l~~~~~~I~sl~fspdg~~L~s~s  734 (784)
                      +||. +++.... +......+.+++++++|.++++.. .+.|.+||. +++.... +......+.++++++++..+++..
T Consensus       166 ~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~  243 (299)
T 2z2n_A          166 RITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEW  243 (299)
T ss_dssp             EECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEET
T ss_pred             EEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEecc
Confidence            9999 6655432 333456788999999999777665 459999999 6654332 233456789999999998555554


Q ss_pred             CCCeEEEEECCCCceEEe--cccCCceEEEEEeCCCCEEEEEECCCcEE
Q 047260          735 GISSLELWNMAENKSMTI--AAHENIISALAQSPVTGMVASASHDSSVK  781 (784)
Q Consensus       735 ~dg~I~Iwdl~~~~~~~~--~~h~~~V~slafspdg~~LaSgs~DG~V~  781 (784)
                      .++.|.+||. ++....+  ..+...+.++++ +++.++++...++.++
T Consensus       244 ~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~  290 (299)
T 2z2n_A          244 GANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAMECDKIGK  290 (299)
T ss_dssp             TTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEETTTEEEE
T ss_pred             CCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEecCCcEEE
Confidence            6789999998 4544333  345567999999 8888777665444333

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.68  E-value=1.6e-15  Score=179.02  Aligned_cols=237  Identities=10%  Similarity=0.058  Sum_probs=161.8

Q ss_pred             EEEEc--CCCCE-EEEEeC-CCeEEEEECC--C-CceeeecCC-----CCCCeEEEEEccCCCEEEEEeCC---------
Q 047260          512 CCHFS--SDGKL-LASSGH-DRKVVLWNMD--T-LQTESTPED-----HKSVVTDVRFRPNSSQLATASVD---------  570 (784)
Q Consensus       512 ~l~fs--pdg~~-Lasgs~-Dg~I~IWd~~--t-~~~~~~l~~-----h~~~It~i~fspdg~~Latgs~D---------  570 (784)
                      .+.|+  |||++ |+.++. +..|.+|++.  . ++ ...+..     |...+.+++|+|||+.|++++.|         
T Consensus        81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~  159 (662)
T 3azo_A           81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDV  159 (662)
T ss_dssp             CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCE
T ss_pred             cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCc
Confidence            44454  99998 776654 5567777765  2 33 444544     67789999999999999999877         


Q ss_pred             -CeEEEEcCCC------Ccceeeecc-CCCCCeEEEEEcCCCCcEEEEEeCC-------CeEEEEeCC-CC---eeEEee
Q 047260          571 -KSVRLWDAAN------PNFCSQAYT-GHSSPIMSLDFHPKKTDLFCFCDND-------NEIQYWSIN-PF---LCTHIT  631 (784)
Q Consensus       571 -g~I~IWdl~~------~~~~~~~~~-~h~~~V~sl~~sp~~~~ll~sgs~d-------g~I~iwDl~-~~---~~~~~~  631 (784)
                       ..|++||+.+      +.  ...+. .+...+..++|+||+..+++++...       ..|++||+. ++   ......
T Consensus       160 ~~~i~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~  237 (662)
T 3azo_A          160 RRFLAAVPLDGSAAADRSA--VRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLL  237 (662)
T ss_dssp             EEEEEEEETTSTTTTCGGG--SEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEE
T ss_pred             eeEEEEEECCCCccccCCc--eeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeC
Confidence             5899999987      33  33444 5557788899999999766655433       479999998 45   333332


Q ss_pred             ---cCCeeEEEEecCCCEEEEEECCC--cEEEEECCCCeEEEEEeCCCCC--------EEEEEEcCCCCEEEEEeCCeEE
Q 047260          632 ---KGGTAQVRFQPRIGQLLAAASDK--VVSIFDIETDRQTHSLQGHAEL--------VNYICWDTNGDYLASVSQNLVK  698 (784)
Q Consensus       632 ---~~~v~~v~fsp~~~~Ll~~s~Dg--~I~IwDl~t~~~i~~l~~h~~~--------V~sl~~spdg~~Lasgsdd~I~  698 (784)
                         ...+..+.|+|+++.++++..++  .|.+||+.+++.......+...        +.+++|++++++++++.++.++
T Consensus       238 ~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~  317 (662)
T 3azo_A          238 GGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAV  317 (662)
T ss_dssp             EETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBSSSCE
T ss_pred             CCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEcCccE
Confidence               35678899999999666666677  6777777666654433322222        5678999999999888767666


Q ss_pred             EE--eCCCCceEEEeccCCCceEEE-EEecCCCEEEEEECCC--eEEEEECCCCceEEe
Q 047260          699 VW--SMASGECIQELSSNGNQFHSC-VFHPSYSTLLVVGGIS--SLELWNMAENKSMTI  752 (784)
Q Consensus       699 Iw--Dl~t~~~i~~l~~~~~~I~sl-~fspdg~~L~s~s~dg--~I~Iwdl~~~~~~~~  752 (784)
                      ||  |+.+++ +..+..+...+..+ .++++.-.+++++.+.  .|.+||+.+++...+
T Consensus       318 l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l  375 (662)
T 3azo_A          318 LGILDPESGE-LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRARTI  375 (662)
T ss_dssp             EEEEETTTTE-EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEEEE
T ss_pred             EEEEECCCCc-EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceEEe
Confidence            66  666555 67777777777766 4443322233334443  566778777776544

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.67  E-value=3e-15  Score=163.78  Aligned_cols=233  Identities=9%  Similarity=0.058  Sum_probs=160.7

Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEE-------------------EEEccCCCEEEEE-----
Q 047260          512 CCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTD-------------------VRFRPNSSQLATA-----  567 (784)
Q Consensus       512 ~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~-------------------i~fspdg~~Latg-----  567 (784)
                      ++.|+|||++|+.++.++.|++||+.+++.......+......                   +.|+|+++.++.+     
T Consensus        85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~  164 (396)
T 3c5m_A           85 GGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHT  164 (396)
T ss_dssp             TCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHT
T ss_pred             cceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccC
Confidence            4789999999999999999999999988776655545443333                   3567777766654     


Q ss_pred             eCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcC-CCCcEEEEEeCC-----CeEEEEeCCCCeeEEeecC----CeeE
Q 047260          568 SVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHP-KKTDLFCFCDND-----NEIQYWSINPFLCTHITKG----GTAQ  637 (784)
Q Consensus       568 s~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp-~~~~ll~sgs~d-----g~I~iwDl~~~~~~~~~~~----~v~~  637 (784)
                      ..+..|.+||+.+++. .. +..+...+..+.|+| ++..++++....     ..|.+||+...........    .+..
T Consensus       165 ~~~~~l~~~d~~~g~~-~~-~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~  242 (396)
T 3c5m_A          165 NPTCRLIKVDIETGEL-EV-IHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTH  242 (396)
T ss_dssp             CCCEEEEEEETTTCCE-EE-EEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEE
T ss_pred             CCcceEEEEECCCCcE-Ee-eccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccc
Confidence            3567899999988662 22 234567789999999 666555544322     4689999876544333332    3567


Q ss_pred             EEEecCCCEEEEEECC-----CcEEEEECCCCeEEEEEeCCCCCEEEEEEcC-CCCEEEEEe-----------------C
Q 047260          638 VRFQPRIGQLLAAASD-----KVVSIFDIETDRQTHSLQGHAELVNYICWDT-NGDYLASVS-----------------Q  694 (784)
Q Consensus       638 v~fsp~~~~Ll~~s~D-----g~I~IwDl~t~~~i~~l~~h~~~V~sl~~sp-dg~~Lasgs-----------------d  694 (784)
                      +.|+|+++.|+.++.+     +.|++||+.+++...... .. .+. +.|+| +|++|++++                 +
T Consensus       243 ~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~  319 (396)
T 3c5m_A          243 EFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV-MP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIEND  319 (396)
T ss_dssp             EEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-CC-SEE-EEEECSSSSEEEEEECCC----------CCCCC
T ss_pred             eEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee-CC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCC
Confidence            8999999988777653     449999998886544332 22 233 89999 999888754                 2


Q ss_pred             CeEEEEeCCCCceEEEeccCCC-----------ceEEEEEecCCCEEEEEECC-C--eEEEEECCCCceE
Q 047260          695 NLVKVWSMASGECIQELSSNGN-----------QFHSCVFHPSYSTLLVVGGI-S--SLELWNMAENKSM  750 (784)
Q Consensus       695 d~I~IwDl~t~~~i~~l~~~~~-----------~I~sl~fspdg~~L~s~s~d-g--~I~Iwdl~~~~~~  750 (784)
                      ..|++||+.+++.. .+..+..           .+..+.|+|+++.|+.++.+ +  .|+++++.++...
T Consensus       320 ~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~~  388 (396)
T 3c5m_A          320 PFLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYKH  388 (396)
T ss_dssp             CEEEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC-
T ss_pred             CcEEEEecccCceE-EccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEcccccc
Confidence            38999999887653 3433333           25668999999998887763 4  4555566666544

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.66  E-value=1e-14  Score=174.35  Aligned_cols=241  Identities=6%  Similarity=0.015  Sum_probs=177.3

Q ss_pred             CCCceEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCe--------
Q 047260          506 RNSKVTCCHFSSDGKLLASSGHDR-----KVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKS--------  572 (784)
Q Consensus       506 H~~~V~~l~fspdg~~Lasgs~Dg-----~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~--------  572 (784)
                      |...+..++|||||++||.+..++     .|++||+.+++.+.....+ ..+..++|+||++.|+.++.++.        
T Consensus       123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~  201 (710)
T 2xdw_A          123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE  201 (710)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred             CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccc
Confidence            445688999999999998776543     8999999998876543222 23678999999999999988876        


Q ss_pred             --------EEEEcCCCCcc---eeeeccCCCCCeEEEEEcCCCCcEEEEEeC----CCeEEEEeCCC------C----ee
Q 047260          573 --------VRLWDAANPNF---CSQAYTGHSSPIMSLDFHPKKTDLFCFCDN----DNEIQYWSINP------F----LC  627 (784)
Q Consensus       573 --------I~IWdl~~~~~---~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~----dg~I~iwDl~~------~----~~  627 (784)
                              |++|++.++..   .+.....|...+..+.|+|++..++++...    +..|++||+.+      .    ..
T Consensus       202 ~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~  281 (710)
T 2xdw_A          202 TSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVK  281 (710)
T ss_dssp             CCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE
T ss_pred             cccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEE
Confidence                    99999987652   222222355668899999999977776652    57899999875      3    12


Q ss_pred             EEeecCCeeEEEEecCCCEEEEEECC----CcEEEEECCCCe--EEEEEeCCCC--CEEEEEEcCCCCEEEEEeCC---e
Q 047260          628 THITKGGTAQVRFQPRIGQLLAAASD----KVVSIFDIETDR--QTHSLQGHAE--LVNYICWDTNGDYLASVSQN---L  696 (784)
Q Consensus       628 ~~~~~~~v~~v~fsp~~~~Ll~~s~D----g~I~IwDl~t~~--~i~~l~~h~~--~V~sl~~spdg~~Lasgsdd---~  696 (784)
                      +......+. ..|+++++.|+..+..    +.|.+||+.++.  ....+..|..  .+..++|++++.++++..++   .
T Consensus       282 l~~~~~~~~-~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~  360 (710)
T 2xdw_A          282 LIDNFEGEY-DYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNT  360 (710)
T ss_dssp             EECSSSSCE-EEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEE
T ss_pred             eeCCCCcEE-EEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEE
Confidence            222223333 3588999988887763    369999998764  2344444544  68889999777777777644   6


Q ss_pred             EEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEEC----CCeEEEEECCCCc
Q 047260          697 VKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGG----ISSLELWNMAENK  748 (784)
Q Consensus       697 I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~----dg~I~Iwdl~~~~  748 (784)
                      |.+||+.+++.+..+..+...+..+.++|++..++....    .++|++||+.+++
T Consensus       361 l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          361 LQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            888898888888888877778888999999877665433    2689999998876

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.66  E-value=4.4e-14  Score=149.43  Aligned_cols=241  Identities=9%  Similarity=0.013  Sum_probs=178.0

Q ss_pred             eEeecCCCceEEEEEcCCCC-EEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCC
Q 047260          501 GCIRSRNSKVTCCHFSSDGK-LLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAA  579 (784)
Q Consensus       501 ~~l~~H~~~V~~l~fspdg~-~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~  579 (784)
                      ..+..+.....+++|+|+|+ +++++..++.|.+||..++  ...+..+...+.+++|+++++++++...++.|.+||..
T Consensus        21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~   98 (296)
T 3e5z_A           21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREP   98 (296)
T ss_dssp             EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECST
T ss_pred             EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCC
Confidence            44455677789999999998 7788888999999999977  55666677889999999999988777777899999997


Q ss_pred             CCcceeeeccC----CCCCeEEEEEcCCCCcEEEEE----e-------------CCCeEEEEeCCCCeeEEee--cCCee
Q 047260          580 NPNFCSQAYTG----HSSPIMSLDFHPKKTDLFCFC----D-------------NDNEIQYWSINPFLCTHIT--KGGTA  636 (784)
Q Consensus       580 ~~~~~~~~~~~----h~~~V~sl~~sp~~~~ll~sg----s-------------~dg~I~iwDl~~~~~~~~~--~~~v~  636 (784)
                      +++.. .....    ....+..++++|++. ++++.    .             ..+.|..++.. .......  .....
T Consensus        99 ~g~~~-~~~~~~~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~  175 (296)
T 3e5z_A           99 GGEWE-SIADSFEGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPN  175 (296)
T ss_dssp             TCCEE-EEECEETTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEE
T ss_pred             CCcEE-EEeeccCCCCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCc
Confidence            76632 22111    123467899999987 55552    2             13467777665 3332222  24567


Q ss_pred             EEEEecCCCEEEEEECCCcEEEEECC-CCeE---EEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEEEec
Q 047260          637 QVRFQPRIGQLLAAASDKVVSIFDIE-TDRQ---THSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELS  712 (784)
Q Consensus       637 ~v~fsp~~~~Ll~~s~Dg~I~IwDl~-t~~~---i~~l~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~~l~  712 (784)
                      .++|+|+++.+++.+.++.|.+||+. +++.   ...+..+...+..++++++|+++++. ++.|.+||.. ++.+..+.
T Consensus       176 gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~-g~~~~~~~  253 (296)
T 3e5z_A          176 GLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA-GDGVHVLTPD-GDELGRVL  253 (296)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-TTEEEEECTT-SCEEEEEE
T ss_pred             cEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-CCeEEEECCC-CCEEEEEE
Confidence            89999999998555568999999997 4544   33343345567789999999987777 7799999986 77888887


Q ss_pred             cCCCceEEEEE-ecCCCEEEEEECCCeEEEEECCCCceE
Q 047260          713 SNGNQFHSCVF-HPSYSTLLVVGGISSLELWNMAENKSM  750 (784)
Q Consensus       713 ~~~~~I~sl~f-spdg~~L~s~s~dg~I~Iwdl~~~~~~  750 (784)
                      .+.. +.+++| .|+++.|++++.+ .|..++..+.+..
T Consensus       254 ~~~~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~~  290 (296)
T 3e5z_A          254 TPQT-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGLE  290 (296)
T ss_dssp             CSSC-CCEEEEESTTSCEEEEEETT-EEEEEECSCCBCC
T ss_pred             CCCC-ceeEEEECCCCCEEEEEcCC-eEEEEEccccccc
Confidence            7766 899999 5888889888876 4666677666543

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.64  E-value=2.4e-14  Score=154.31  Aligned_cols=232  Identities=13%  Similarity=0.166  Sum_probs=160.2

Q ss_pred             CceEEEEEcCCCCEEEEEeCC---C--eEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCC------------
Q 047260          508 SKVTCCHFSSDGKLLASSGHD---R--KVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVD------------  570 (784)
Q Consensus       508 ~~V~~l~fspdg~~Lasgs~D---g--~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~D------------  570 (784)
                      ..+.+++|||||++||.++.+   +  .|.+||+.+++.......+ . +.+++|+|+++.|+.++.+            
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~  136 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD  136 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence            458899999999999887654   3  4888899887765554333 3 9999999999999888743            


Q ss_pred             ---------------CeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCC---------CeEEEEeCCCCe
Q 047260          571 ---------------KSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDND---------NEIQYWSINPFL  626 (784)
Q Consensus       571 ---------------g~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~d---------g~I~iwDl~~~~  626 (784)
                                     ..|.+||+.+++. ...+.. . .+..+.|+|++  +++++..+         ..|.++|  +..
T Consensus       137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~-~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d--~~~  209 (347)
T 2gop_A          137 VPAWFDDLGFFDGEKTTFWIFDTESEEV-IEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWE--DGK  209 (347)
T ss_dssp             CCCC---------CEEEEEEEETTTTEE-EEEEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEE--TTE
T ss_pred             cceeecCcccccCccceEEEEECCCCeE-EeeecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeC--CCc
Confidence                           5789999987663 122333 3 78899999998  66655443         2455555  444


Q ss_pred             eEEeecCCeeEEEEecCCCEEEEEECC--------CcEEEEECCCCeEEEEEeCCCCCEEE-EEEcCCCCEEEEEeCC-e
Q 047260          627 CTHITKGGTAQVRFQPRIGQLLAAASD--------KVVSIFDIETDRQTHSLQGHAELVNY-ICWDTNGDYLASVSQN-L  696 (784)
Q Consensus       627 ~~~~~~~~v~~v~fsp~~~~Ll~~s~D--------g~I~IwDl~t~~~i~~l~~h~~~V~s-l~~spdg~~Lasgsdd-~  696 (784)
                      ....... .....++|+++.|+.++.+        ..|.+||  +++.......+...+.. +.|+ ++ ++++++++ .
T Consensus       210 ~~~l~~~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~  284 (347)
T 2gop_A          210 EEKMFEK-VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGS  284 (347)
T ss_dssp             EEEEEEE-ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTE
T ss_pred             eEEeccC-cceeeECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCc
Confidence            3332222 3333449999998887754        3688888  55554444556778886 9999 88 77777644 8


Q ss_pred             EEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeE-EEEECCCCceEEecccCCc
Q 047260          697 VKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSL-ELWNMAENKSMTIAAHENI  758 (784)
Q Consensus       697 I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I-~Iwdl~~~~~~~~~~h~~~  758 (784)
                      ++|| +.+++... +..+...|.++.|+|  ..+++++.++.. .||.+. ++...+..|...
T Consensus       285 ~~l~-~~~g~~~~-~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~~~~lt~~n~~  342 (347)
T 2gop_A          285 VNLY-IWDGEIKP-IAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GEEKQLTDYNDP  342 (347)
T ss_dssp             EEEE-EESSSEEE-EECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SSEEECCCTTST
T ss_pred             EEEE-EcCCceEE-EecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-CcEEEeccccHh
Confidence            8998 77666544 444567899999999  677777777654 677666 655566665543

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.63  E-value=1.9e-13  Score=147.64  Aligned_cols=249  Identities=10%  Similarity=0.025  Sum_probs=185.7

Q ss_pred             CCCeEEEEECCCCceeeecC------CCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEE
Q 047260          527 HDRKVVLWNMDTLQTESTPE------DHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDF  600 (784)
Q Consensus       527 ~Dg~I~IWd~~t~~~~~~l~------~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~  600 (784)
                      .++.|.+||.++++....+.      ........+.+. +++.+++...++.|.+||..+.+. ...+. ....+..+++
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~-~~~i~-~~~~p~~i~~   91 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKE-VGRIT-GFTSPRYIHF   91 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCE-EEEEE-CCSSEEEEEE
T ss_pred             CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEE-EEEcC-CCCCCcEEEE
Confidence            37899999999988766542      122456778874 445555666679999999998773 34343 3467889999


Q ss_pred             cCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec--C------CeeEEEEecCCCEEEEEE--CCCcEEEEECCCCeEEEEE
Q 047260          601 HPKKTDLFCFCDNDNEIQYWSINPFLCTHITK--G------GTAQVRFQPRIGQLLAAA--SDKVVSIFDIETDRQTHSL  670 (784)
Q Consensus       601 sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~--~------~v~~v~fsp~~~~Ll~~s--~Dg~I~IwDl~t~~~i~~l  670 (784)
                      ++++ .++++...++.|.+||..+.+....+.  .      ....+++  +++.++++.  .++.|.+||+.+++.+..+
T Consensus        92 ~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i  168 (328)
T 3dsm_A           92 LSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDEL  168 (328)
T ss_dssp             EETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEE
T ss_pred             eCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEE
Confidence            8887 566666579999999999887765443  2      4456777  466777776  3899999999999988887


Q ss_pred             eCCCCCEEEEEEcCCCCEEEEEeC-----------CeEEEEeCCCCceEEEeccC-CCceEEEEEecCCCEEEEEECCCe
Q 047260          671 QGHAELVNYICWDTNGDYLASVSQ-----------NLVKVWSMASGECIQELSSN-GNQFHSCVFHPSYSTLLVVGGISS  738 (784)
Q Consensus       671 ~~h~~~V~sl~~spdg~~Lasgsd-----------d~I~IwDl~t~~~i~~l~~~-~~~I~sl~fspdg~~L~s~s~dg~  738 (784)
                      ... .....++++++|++++++..           +.|.+||..+++.+..+... ......++|+|+++.|+++..  .
T Consensus       169 ~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~  245 (328)
T 3dsm_A          169 TIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--D  245 (328)
T ss_dssp             ECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--S
T ss_pred             EcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--E
Confidence            643 34567899999998777653           48999999999888777543 346899999999999888765  8


Q ss_pred             EEEEECCCCceEE--e-cccCCceEEEEEeCC-CCEEEEE----ECCCcEEEeC
Q 047260          739 LELWNMAENKSMT--I-AAHENIISALAQSPV-TGMVASA----SHDSSVKLWK  784 (784)
Q Consensus       739 I~Iwdl~~~~~~~--~-~~h~~~V~slafspd-g~~LaSg----s~DG~V~IWd  784 (784)
                      |.+||..+++...  + ..+.....+++++|+ +.++++.    ..++.|.+||
T Consensus       246 v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d  299 (328)
T 3dsm_A          246 IWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYS  299 (328)
T ss_dssp             EEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEEC
T ss_pred             EEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEEC
Confidence            9999998887541  1 122467899999995 5555555    4688999986

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.63  E-value=1.6e-13  Score=145.06  Aligned_cols=233  Identities=9%  Similarity=0.017  Sum_probs=169.0

Q ss_pred             eeeecCCCCCCeEEEEEccCCC-EEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEE
Q 047260          541 TESTPEDHKSVVTDVRFRPNSS-QLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQY  619 (784)
Q Consensus       541 ~~~~l~~h~~~It~i~fspdg~-~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~i  619 (784)
                      .+..+..+.....+++|+|+++ +++++..++.|.+||..++   ...+..+...+.++++++++. ++++...++.|.+
T Consensus        19 ~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~l~~~~dg~-l~v~~~~~~~i~~   94 (296)
T 3e5z_A           19 EARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ---LSPEMHPSHHQNGHCLNKQGH-LIACSHGLRRLER   94 (296)
T ss_dssp             CCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC---EEEEESSCSSEEEEEECTTCC-EEEEETTTTEEEE
T ss_pred             cEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC---eEEEECCCCCcceeeECCCCc-EEEEecCCCeEEE
Confidence            3344445667788999999998 7788888999999999875   344555677899999999987 6666666789999


Q ss_pred             EeCCCCeeEEeec-------CCeeEEEEecCCCEEEEE----E-------------CCCcEEEEECCCCeEEEEEeCCCC
Q 047260          620 WSINPFLCTHITK-------GGTAQVRFQPRIGQLLAA----A-------------SDKVVSIFDIETDRQTHSLQGHAE  675 (784)
Q Consensus       620 wDl~~~~~~~~~~-------~~v~~v~fsp~~~~Ll~~----s-------------~Dg~I~IwDl~t~~~i~~l~~h~~  675 (784)
                      ||..+++......       ..+..++++|+|..+++.    +             ..+.|..+|.. ++ +..+..+..
T Consensus        95 ~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~  172 (296)
T 3e5z_A           95 QREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRV  172 (296)
T ss_dssp             ECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCS
T ss_pred             EcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCC
Confidence            9997665443321       245679999999877663    2             13466666665 44 344455667


Q ss_pred             CEEEEEEcCCCCEEEEEeC-CeEEEEeCC-CCce---EEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE
Q 047260          676 LVNYICWDTNGDYLASVSQ-NLVKVWSMA-SGEC---IQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM  750 (784)
Q Consensus       676 ~V~sl~~spdg~~Lasgsd-d~I~IwDl~-t~~~---i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~  750 (784)
                      ....++|+|++++|++.+. +.|.+||+. +++.   ...+..+...+..++++++|..+++.  ++.|.+||.......
T Consensus       173 ~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~g~~~~  250 (296)
T 3e5z_A          173 KPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPDGDELG  250 (296)
T ss_dssp             SEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTTSCEEE
T ss_pred             CCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCCCCEEE
Confidence            7899999999999855554 499999997 5554   33343344556789999999855554  789999998744333


Q ss_pred             EecccCCceEEEEE-eCCCCEEEEEECCCcEEE
Q 047260          751 TIAAHENIISALAQ-SPVTGMVASASHDSSVKL  782 (784)
Q Consensus       751 ~~~~h~~~V~slaf-spdg~~LaSgs~DG~V~I  782 (784)
                      .+..+.. +++++| .++++.|++++.++.+++
T Consensus       251 ~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~  282 (296)
T 3e5z_A          251 RVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWSI  282 (296)
T ss_dssp             EEECSSC-CCEEEEESTTSCEEEEEETTEEEEE
T ss_pred             EEECCCC-ceeEEEECCCCCEEEEEcCCeEEEE
Confidence            5556666 999999 588898998888875544

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.62  E-value=3.4e-12  Score=133.70  Aligned_cols=270  Identities=9%  Similarity=-0.019  Sum_probs=191.9

Q ss_pred             cCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceee-ecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcc
Q 047260          505 SRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTES-TPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNF  583 (784)
Q Consensus       505 ~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~-~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~  583 (784)
                      .....+.+++++++|+++++...++.|.+||.. ++... .+..+...+.++++.+++.++++...++.|.+||.. ++.
T Consensus        17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~   94 (300)
T 2qc5_A           17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF   94 (300)
T ss_dssp             STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred             CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe
Confidence            345679999999999988877678999999988 55443 233344679999999999877777668899999988 453


Q ss_pred             eeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEe-e---cCCeeEEEEecCCCEEEEEECCCcEEEE
Q 047260          584 CSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHI-T---KGGTAQVRFQPRIGQLLAAASDKVVSIF  659 (784)
Q Consensus       584 ~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~-~---~~~v~~v~fsp~~~~Ll~~s~Dg~I~Iw  659 (784)
                      ...........+.++++.+++. ++++...++.|..||.. .+.... .   ...+..+++.+++..+++...++.|..|
T Consensus        95 ~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~  172 (300)
T 2qc5_A           95 TEYPLPQPDSGPYGITEGLNGD-IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRI  172 (300)
T ss_dssp             EEEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEE
T ss_pred             EEecCCCCCCCCccceECCCCC-EEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEE
Confidence            3222333446789999998876 66666668899999987 443322 2   2457889999998854444447889999


Q ss_pred             ECCCCeEEEE-EeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEE-eccCCCceEEEEEecCCCEEEEEECC
Q 047260          660 DIETDRQTHS-LQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQE-LSSNGNQFHSCVFHPSYSTLLVVGGI  736 (784)
Q Consensus       660 Dl~t~~~i~~-l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~-l~~~~~~I~sl~fspdg~~L~s~s~d  736 (784)
                      |. +++.... +..+...+..++++++|.++++...+ .|.+||. +++.... +......+.++++++++..+++...+
T Consensus       173 ~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~  250 (300)
T 2qc5_A          173 TN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGA  250 (300)
T ss_dssp             CT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTT
T ss_pred             CC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCC
Confidence            98 5544432 22345678999999999877776544 8999998 5544332 33345668899999999855555556


Q ss_pred             CeEEEEECCCCceEEe--cccCCceEEEEEeCCCCEEEEEECCCcEEEe
Q 047260          737 SSLELWNMAENKSMTI--AAHENIISALAQSPVTGMVASASHDSSVKLW  783 (784)
Q Consensus       737 g~I~Iwdl~~~~~~~~--~~h~~~V~slafspdg~~LaSgs~DG~V~IW  783 (784)
                      +.|.+||. ++....+  ......+.+++++++|.++++.. . .|..+
T Consensus       251 ~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~  296 (300)
T 2qc5_A          251 NQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKL  296 (300)
T ss_dssp             TEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEE
T ss_pred             CeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEe
Confidence            89999998 4544433  33456789999999998666554 4 55544

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.61  E-value=4.7e-14  Score=168.22  Aligned_cols=244  Identities=11%  Similarity=0.039  Sum_probs=167.2

Q ss_pred             cCCCceEEEEEcCCCCEEEEE-----eCCCeEEEEECCCCceeeecCCCCCCe--EEEEEccCCCEEEEEeCCCe-----
Q 047260          505 SRNSKVTCCHFSSDGKLLASS-----GHDRKVVLWNMDTLQTESTPEDHKSVV--TDVRFRPNSSQLATASVDKS-----  572 (784)
Q Consensus       505 ~H~~~V~~l~fspdg~~Lasg-----s~Dg~I~IWd~~t~~~~~~l~~h~~~I--t~i~fspdg~~Latgs~Dg~-----  572 (784)
                      +|...+.+++|||||++||.+     +.+..|++||+.+++.+.  ..+...+  ..++|+|||+.|+.++.|..     
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~  195 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKV  195 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCG
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCcc
Confidence            466679999999999999843     345689999999988651  1122222  68999999999999998876     


Q ss_pred             --------EEEEcCCCCcc---eeeeccCCCCCeEEEEEcCCCCcEEEEEeCC-C--eEEEEeCCCCe--eEEeecCCee
Q 047260          573 --------VRLWDAANPNF---CSQAYTGHSSPIMSLDFHPKKTDLFCFCDND-N--EIQYWSINPFL--CTHITKGGTA  636 (784)
Q Consensus       573 --------I~IWdl~~~~~---~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~d-g--~I~iwDl~~~~--~~~~~~~~v~  636 (784)
                              |++|++.++..   ++.....+...+..+.|+|++..++++...+ +  .|++||.....  .+......+.
T Consensus       196 ~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~  275 (695)
T 2bkl_A          196 DERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKY  275 (695)
T ss_dssp             GGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCE
T ss_pred             ccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceE
Confidence                    99999987652   2233334556789999999999777766544 2  67777765433  2333334445


Q ss_pred             EEEEecCCCEEEEEEC----CCcEEEEECCCCeE---EEEEeCC-CCCEEEEEEcCCCCEEEEEeCC-eEEEEeCC-CCc
Q 047260          637 QVRFQPRIGQLLAAAS----DKVVSIFDIETDRQ---THSLQGH-AELVNYICWDTNGDYLASVSQN-LVKVWSMA-SGE  706 (784)
Q Consensus       637 ~v~fsp~~~~Ll~~s~----Dg~I~IwDl~t~~~---i~~l~~h-~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~-t~~  706 (784)
                      ...+ +++. +++.+.    ++.|.+||+.++..   ...+..+ ...+..++|+ ++.++++..++ ..+||.+. +++
T Consensus       276 ~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~  352 (695)
T 2bkl_A          276 EVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGK  352 (695)
T ss_dssp             EEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred             EEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCC
Confidence            5555 6666 665554    58899999987653   3333333 4568888888 66677776644 55555443 456


Q ss_pred             eEEEeccC-CCceEEEEEecCCCEEEEEEC----CCeEEEEECCCCceEEec
Q 047260          707 CIQELSSN-GNQFHSCVFHPSYSTLLVVGG----ISSLELWNMAENKSMTIA  753 (784)
Q Consensus       707 ~i~~l~~~-~~~I~sl~fspdg~~L~s~s~----dg~I~Iwdl~~~~~~~~~  753 (784)
                      .+..+..+ ...+..+.++|++..++....    .++|++||+.+++...+.
T Consensus       353 ~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~~l~  404 (695)
T 2bkl_A          353 PVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSELWA  404 (695)
T ss_dssp             EEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEEEEE
T ss_pred             eeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEEe
Confidence            66666654 566778889999887764443    368999999988755443

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.61  E-value=1.1e-12  Score=152.31  Aligned_cols=264  Identities=11%  Similarity=0.082  Sum_probs=192.5

Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCC--CCcceeeeccCCCCC
Q 047260          517 SDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAA--NPNFCSQAYTGHSSP  594 (784)
Q Consensus       517 pdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~--~~~~~~~~~~~h~~~  594 (784)
                      +.+.++++...++.|.+||..+++.+..+.. ...+..+.|+||++++++++.|+.|.+||+.  +.+ ....+.. ...
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~-~v~~i~~-G~~  241 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT-TVAEIKI-GSE  241 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC-EEEEEEC-CSE
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCc-EeEEEec-CCC
Confidence            3445677777899999999999999988853 3467799999999999999999999999995  555 3333433 234


Q ss_pred             eEEEEEc----CCCCcEEEEEeCCCeEEEEeCCCCeeEEeecC--------------CeeEEEEecCCCEEEEEEC-CCc
Q 047260          595 IMSLDFH----PKKTDLFCFCDNDNEIQYWSINPFLCTHITKG--------------GTAQVRFQPRIGQLLAAAS-DKV  655 (784)
Q Consensus       595 V~sl~~s----p~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~--------------~v~~v~fsp~~~~Ll~~s~-Dg~  655 (784)
                      ...++|+    |++++++++...++.|.++|..+.+.+.....              .+..+.+++++..+++... +|.
T Consensus       242 P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~  321 (567)
T 1qks_A          242 ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK  321 (567)
T ss_dssp             EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred             CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCe
Confidence            6799999    69998998888899999999998777655431              4567778888776666555 699


Q ss_pred             EEEEECCCCeEE--EEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEeCCCCceEEEecc-CCCc--eEEE-EEecCC
Q 047260          656 VSIFDIETDRQT--HSLQGHAELVNYICWDTNGDYLASVS--QNLVKVWSMASGECIQELSS-NGNQ--FHSC-VFHPSY  727 (784)
Q Consensus       656 I~IwDl~t~~~i--~~l~~h~~~V~sl~~spdg~~Lasgs--dd~I~IwDl~t~~~i~~l~~-~~~~--I~sl-~fspdg  727 (784)
                      |.++|....+.+  ..+. ......++.|+|+|++|+++.  ++.|.++|+.+++.+..+.. ...+  -... .++|++
T Consensus       322 v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~  400 (567)
T 1qks_A          322 ILLVDYTDLNNLKTTEIS-AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTF  400 (567)
T ss_dssp             EEEEETTCSSEEEEEEEE-CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTT
T ss_pred             EEEEecCCCccceeeeee-ccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCC
Confidence            999999875432  2232 445677899999999988877  45999999999998877754 2111  0122 268886


Q ss_pred             CEEEEEE--CCCeEEEEECCC-------CceE-EecccCCceEEEEEeCCCCEEEEEEC-------CCcEEEeC
Q 047260          728 STLLVVG--GISSLELWNMAE-------NKSM-TIAAHENIISALAQSPVTGMVASASH-------DSSVKLWK  784 (784)
Q Consensus       728 ~~L~s~s--~dg~I~Iwdl~~-------~~~~-~~~~h~~~V~slafspdg~~LaSgs~-------DG~V~IWd  784 (784)
                      ..+++.+  .++.|.++|..+       .+.+ ++......-..+.++|++++|++...       ...|.|||
T Consensus       401 g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d  474 (567)
T 1qks_A          401 GPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFD  474 (567)
T ss_dssp             EEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEE
T ss_pred             CcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEE
Confidence            5555544  457999999987       4444 33333233345778999998888663       35788875

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.60  E-value=1.9e-13  Score=141.84  Aligned_cols=237  Identities=12%  Similarity=0.012  Sum_probs=169.3

Q ss_pred             ceEEEEEcCCCCEEE-EEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeee
Q 047260          509 KVTCCHFSSDGKLLA-SSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQA  587 (784)
Q Consensus       509 ~V~~l~fspdg~~La-sgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~  587 (784)
                      ...+++++++|++++ +...++.|.+||..+.........+...+.+|+++++++++++.. ++.|.+||...... ...
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~-~~~  102 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ-TVL  102 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC-EEC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE-eee
Confidence            688999999999776 446788999999876554333333445788999999998666555 88999999876542 222


Q ss_pred             ccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEEEECCCcEEEEECCCC
Q 047260          588 YTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLAAASDKVVSIFDIETD  664 (784)
Q Consensus       588 ~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~  664 (784)
                      .......+.++++.+++. ++++...++.|.+|+..+........   .....+++++++..+++...++.|.+||....
T Consensus       103 ~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~  181 (270)
T 1rwi_B          103 PFDGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN  181 (270)
T ss_dssp             CCCSCSSEEEEEECTTCC-EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTC
T ss_pred             ecCCcCCCcceEECCCCC-EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCC
Confidence            222335789999999886 77777778899999876554433222   35678999999885555555789999999877


Q ss_pred             eEEEEEeCCCCCEEEEEEcCCCCEEEEEeC-CeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEE
Q 047260          665 RQTHSLQGHAELVNYICWDTNGDYLASVSQ-NLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWN  743 (784)
Q Consensus       665 ~~i~~l~~h~~~V~sl~~spdg~~Lasgsd-d~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwd  743 (784)
                      ........+...+.+++++++|.++++... +.|.+||............+...+.++++++++..+++...++.|++|+
T Consensus       182 ~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~  261 (270)
T 1rwi_B          182 NQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLT  261 (270)
T ss_dssp             CEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred             ceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEc
Confidence            654433334467899999999977776654 4999999876544332223335689999999998777777889999999


Q ss_pred             CCCCc
Q 047260          744 MAENK  748 (784)
Q Consensus       744 l~~~~  748 (784)
                      +...+
T Consensus       262 ~~~~~  266 (270)
T 1rwi_B          262 SLEHH  266 (270)
T ss_dssp             CCGGG
T ss_pred             CCCcc
Confidence            87654

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.58  E-value=6e-13  Score=143.78  Aligned_cols=250  Identities=8%  Similarity=-0.002  Sum_probs=176.9

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeec
Q 047260          509 KVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAY  588 (784)
Q Consensus       509 ~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~  588 (784)
                      ...++.+. +++++++...++.|.+||..+++.+.++. .......++++++++.+++...++.|.+||..+.+. ...+
T Consensus        45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~-~~~i  121 (328)
T 3dsm_A           45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEI-TGYI  121 (328)
T ss_dssp             CEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEE-EEEE
T ss_pred             cceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeE-EEEE
Confidence            35667774 34555556667999999999999988884 456789999999885444444899999999998763 3333


Q ss_pred             cCCC-----CCeEEEEEcCCCCcEEEEEe-CCCeEEEEeCCCCeeEEeec--CCeeEEEEecCCCEEEEEECC-------
Q 047260          589 TGHS-----SPIMSLDFHPKKTDLFCFCD-NDNEIQYWSINPFLCTHITK--GGTAQVRFQPRIGQLLAAASD-------  653 (784)
Q Consensus       589 ~~h~-----~~V~sl~~sp~~~~ll~sgs-~dg~I~iwDl~~~~~~~~~~--~~v~~v~fsp~~~~Ll~~s~D-------  653 (784)
                      ....     .....+++  ++..++++.. .++.|.+||+.+.+.+..+.  .....+.++++++.++++..+       
T Consensus       122 ~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~  199 (328)
T 3dsm_A          122 ECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYG  199 (328)
T ss_dssp             ECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSC
T ss_pred             EcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccc
Confidence            2211     14556777  4555666655 48999999999887766554  345678899998755555444       


Q ss_pred             ---CcEEEEECCCCeEEEEEeCC-CCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEEE--eccCCCceEEEEEecCC
Q 047260          654 ---KVVSIFDIETDRQTHSLQGH-AELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQE--LSSNGNQFHSCVFHPSY  727 (784)
Q Consensus       654 ---g~I~IwDl~t~~~i~~l~~h-~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~~--l~~~~~~I~sl~fspdg  727 (784)
                         +.|.+||..+++....+... ......++|+|++++|+++.. .|.+||..+++....  +.........++++|++
T Consensus       200 ~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~  278 (328)
T 3dsm_A          200 YEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN-DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNN  278 (328)
T ss_dssp             BCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS-SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTT
T ss_pred             cCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc-EEEEEECCCCceeeeeeecCCCCceEEEEEcCCC
Confidence               78999999999888777533 346889999999999888766 899999988875321  12224567899999965


Q ss_pred             CEEEEEE-----CCCeEEEEECCCCceEEecccCCceEEEEEe
Q 047260          728 STLLVVG-----GISSLELWNMAENKSMTIAAHENIISALAQS  765 (784)
Q Consensus       728 ~~L~s~s-----~dg~I~Iwdl~~~~~~~~~~h~~~V~slafs  765 (784)
                      ..|+++.     .++.|.+||.. ++.+....-......++|-
T Consensus       279 g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~~P~~~~~~  320 (328)
T 3dsm_A          279 GEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGIIPGAFCWK  320 (328)
T ss_dssp             CCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEEESEEEEEEE
T ss_pred             CeEEEEcccccccCCEEEEECCC-CCEEEEEEeccCcceEEEe
Confidence            5565554     56899999998 7665333333334555553

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.58  E-value=4.2e-13  Score=147.50  Aligned_cols=269  Identities=8%  Similarity=0.060  Sum_probs=192.6

Q ss_pred             EEcCCCCEEEEEeC-----CCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEe----------CCCeEEEEcC
Q 047260          514 HFSSDGKLLASSGH-----DRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATAS----------VDKSVRLWDA  578 (784)
Q Consensus       514 ~fspdg~~Lasgs~-----Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs----------~Dg~I~IWdl  578 (784)
                      ...|+++.+++...     ++.|.++|..+++.+..+.....+ . +.++||+++|++++          .++.|.+||.
T Consensus        39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~  116 (386)
T 3sjl_D           39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDP  116 (386)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred             ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEEC
Confidence            45689988887765     679999999999999988755555 4 99999999988876          3678999999


Q ss_pred             CCCcceeeeccCC------CCCeEEEEEcCCCCcEEEEEeC-CCeEEEEeCCCCeeEEeecCCeeEEEEecCCCEEEEEE
Q 047260          579 ANPNFCSQAYTGH------SSPIMSLDFHPKKTDLFCFCDN-DNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAA  651 (784)
Q Consensus       579 ~~~~~~~~~~~~h------~~~V~sl~~sp~~~~ll~sgs~-dg~I~iwDl~~~~~~~~~~~~v~~v~fsp~~~~Ll~~s  651 (784)
                      .+.+.......+.      ......+.|+|++..++++... ++.|.++|+.+.+.+..+.-+-+...+......+++.+
T Consensus       117 ~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~  196 (386)
T 3sjl_D          117 VTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHC  196 (386)
T ss_dssp             TTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEE
T ss_pred             CCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEEC
Confidence            9977433332221      1246679999999987777653 78999999999998887764433333444456777888


Q ss_pred             CCCcEEEEECCC-CeEEEEEeCC----CCCEE-EEEEc-CCCCEEEEEeCCeEEEEeCCCCc--eEEEecc---------
Q 047260          652 SDKVVSIFDIET-DRQTHSLQGH----AELVN-YICWD-TNGDYLASVSQNLVKVWSMASGE--CIQELSS---------  713 (784)
Q Consensus       652 ~Dg~I~IwDl~t-~~~i~~l~~h----~~~V~-sl~~s-pdg~~Lasgsdd~I~IwDl~t~~--~i~~l~~---------  713 (784)
                      .||.+.++++.. ++.......+    ...+. ...|. ++|+++++..++.|++.|+.++.  .+..+..         
T Consensus       197 ~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g  276 (386)
T 3sjl_D          197 RDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADG  276 (386)
T ss_dssp             TTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTT
T ss_pred             CCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceecccccccccc
Confidence            999999999986 5543322111    12221 23554 68877776667799999997664  3333320         


Q ss_pred             -CCCceEEEEEecCCCEEEEEEC----------CCeEEEEECCCCceEEecccCCceEEEEEeCCCC-EEEEEEC-CCcE
Q 047260          714 -NGNQFHSCVFHPSYSTLLVVGG----------ISSLELWNMAENKSMTIAAHENIISALAQSPVTG-MVASASH-DSSV  780 (784)
Q Consensus       714 -~~~~I~sl~fspdg~~L~s~s~----------dg~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~-~LaSgs~-DG~V  780 (784)
                       ....+..++++++++.+++...          .+.|.++|+.+++.+....-...+..|++++|++ +|++++. ++.|
T Consensus       277 ~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~~~~~V  356 (386)
T 3sjl_D          277 WRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTL  356 (386)
T ss_dssp             EEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEETTTTEE
T ss_pred             ccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcCCCCeE
Confidence             0123345788999999888753          2479999999999885544445788999999997 7777654 8899


Q ss_pred             EEeC
Q 047260          781 KLWK  784 (784)
Q Consensus       781 ~IWd  784 (784)
                      .|+|
T Consensus       357 sViD  360 (386)
T 3sjl_D          357 YIHD  360 (386)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9886

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.57  E-value=4.6e-13  Score=138.81  Aligned_cols=231  Identities=9%  Similarity=-0.040  Sum_probs=165.7

Q ss_pred             CeEEEEEccCCCEEE-EEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEE
Q 047260          551 VVTDVRFRPNSSQLA-TASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTH  629 (784)
Q Consensus       551 ~It~i~fspdg~~La-tgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~  629 (784)
                      ...++++++++++++ +...++.|.+||..+... ......+...+.++++.+++. ++++.. ++.|.+||........
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~p~~i~~~~~g~-l~v~~~-~~~i~~~d~~~~~~~~  101 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGT-TVLPFNGLYQPQGLAVDGAGT-VYVTDF-NNRVVTLAAGSNNQTV  101 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC------EECCCCSCCSCCCEEECTTCC-EEEEET-TTEEEEECTTCSCCEE
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCccc-ceEeeCCcCCcceeEECCCCC-EEEEcC-CCEEEEEeCCCceEee
Confidence            678999999998766 446789999999866442 222223335678999999877 666555 8899999988654433


Q ss_pred             eec---CCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeC-CeEEEEeCCCC
Q 047260          630 ITK---GGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQ-NLVKVWSMASG  705 (784)
Q Consensus       630 ~~~---~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsd-d~I~IwDl~t~  705 (784)
                      ...   ..+..+++++++..+++...++.|.+||..+.............+.+++++++|+++++... +.|.+||....
T Consensus       102 ~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~  181 (270)
T 1rwi_B          102 LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN  181 (270)
T ss_dssp             CCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTC
T ss_pred             eecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCC
Confidence            221   45788999999875555556789999987655443322233346788999999997776654 49999998877


Q ss_pred             ceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceEEec-ccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          706 ECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIA-AHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       706 ~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~~-~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      ............+..+++++++..+++...++.|.+||.......... .+...+.+++++++++++++...+++|++|+
T Consensus       182 ~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~  261 (270)
T 1rwi_B          182 NQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLT  261 (270)
T ss_dssp             CEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred             ceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEc
Confidence            654433333367889999999966666666789999999776554333 3346789999999999888888899999985

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.57  E-value=6e-13  Score=158.99  Aligned_cols=265  Identities=7%  Similarity=-0.006  Sum_probs=180.6

Q ss_pred             CCCCEEEEEeCCC-----eEEEEECCCCceeeec------CCCCCCeEEEEEccCCCEEEEEeCCC-----eEEEEcCCC
Q 047260          517 SDGKLLASSGHDR-----KVVLWNMDTLQTESTP------EDHKSVVTDVRFRPNSSQLATASVDK-----SVRLWDAAN  580 (784)
Q Consensus       517 pdg~~Lasgs~Dg-----~I~IWd~~t~~~~~~l------~~h~~~It~i~fspdg~~Latgs~Dg-----~I~IWdl~~  580 (784)
                      |+|++++....++     .|.+.+...++....+      .+|...+..++|+|||++|+.++.++     .|++||+.+
T Consensus        81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t  160 (710)
T 2xdw_A           81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG  160 (710)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred             EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence            7888877654332     3455554444332221      23445688999999999998876644     899999998


Q ss_pred             CcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCC---------------eEEEEeCCCCee--EEeec-----CCeeEE
Q 047260          581 PNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDN---------------EIQYWSINPFLC--THITK-----GGTAQV  638 (784)
Q Consensus       581 ~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg---------------~I~iwDl~~~~~--~~~~~-----~~v~~v  638 (784)
                      ++........  ..+..++|+||+..++++.....               .|++|++.+...  ...+.     ..+..+
T Consensus       161 g~~~~~~~~~--~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~  238 (710)
T 2xdw_A          161 AKELPDVLER--VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGA  238 (710)
T ss_dssp             TEEEEEEEEE--ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEE
T ss_pred             CCCCcccccC--cccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEE
Confidence            7743322222  23678999999987666654322               399999987542  22222     235788


Q ss_pred             EEecCCCEEEEEEC-----CCcEEEEECCC------Ce-EEEEEeCCCCCEEEEEEcCCCCEEEEEeC-C----eEEEEe
Q 047260          639 RFQPRIGQLLAAAS-----DKVVSIFDIET------DR-QTHSLQGHAELVNYICWDTNGDYLASVSQ-N----LVKVWS  701 (784)
Q Consensus       639 ~fsp~~~~Ll~~s~-----Dg~I~IwDl~t------~~-~i~~l~~h~~~V~sl~~spdg~~Lasgsd-d----~I~IwD  701 (784)
                      .|+|++++|+.++.     +..|++||+.+      +. ....+..+...+.. .|+++|..|+..++ +    .|.+||
T Consensus       239 ~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d  317 (710)
T 2xdw_A          239 ELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINID  317 (710)
T ss_dssp             EECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEE
T ss_pred             EEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEe
Confidence            99999999988775     56899999986      43 45566666666655 48889887776653 2    699999


Q ss_pred             CCCCc--eEEEeccCCC--ceEEEEEecCCCEEEEEECCC--eEEEEECCCCceE-EecccCCceEEEEEeCCCCEEEEE
Q 047260          702 MASGE--CIQELSSNGN--QFHSCVFHPSYSTLLVVGGIS--SLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASA  774 (784)
Q Consensus       702 l~t~~--~i~~l~~~~~--~I~sl~fspdg~~L~s~s~dg--~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg~~LaSg  774 (784)
                      +.++.  ....+..+..  .+..+.|++++..+++...++  .|.+||+.+++.. .+..+.+.|..++++|++..|+..
T Consensus       318 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~  397 (710)
T 2xdw_A          318 FTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQ  397 (710)
T ss_dssp             TTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEE
T ss_pred             CCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEE
Confidence            98874  2344544433  678889997777777777787  4777888666643 566678889999999998755533


Q ss_pred             -EC---CCcEEEeC
Q 047260          775 -SH---DSSVKLWK  784 (784)
Q Consensus       775 -s~---DG~V~IWd  784 (784)
                       +.   .+.|++||
T Consensus       398 ~ss~~~P~~i~~~d  411 (710)
T 2xdw_A          398 FTSFLSPGIIYHCD  411 (710)
T ss_dssp             EECSSCCCEEEEEE
T ss_pred             EeCCCCCCEEEEEE
Confidence             32   45677775

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.57  E-value=6.6e-12  Score=138.46  Aligned_cols=265  Identities=8%  Similarity=-0.019  Sum_probs=183.0

Q ss_pred             EcCCCCEEEEEeC--CC---eEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEe----------CCCeEEEEcCC
Q 047260          515 FSSDGKLLASSGH--DR---KVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATAS----------VDKSVRLWDAA  579 (784)
Q Consensus       515 fspdg~~Lasgs~--Dg---~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs----------~Dg~I~IWdl~  579 (784)
                      ..|++++++++..  ..   .|.+||..+++.+..+.....+  .++|+||+++|+++.          .++.|.+||..
T Consensus        28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~  105 (373)
T 2mad_H           28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV  105 (373)
T ss_pred             CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC
Confidence            3467777766653  22   8899999999998888655444  999999999999886          36789999998


Q ss_pred             CCcceeeeccC------CCCCeEEEEEcCCCCcEEEEEeC-CCeEEEEeCCCCeeEEe-ecCCeeEEEEecCCC-EEEEE
Q 047260          580 NPNFCSQAYTG------HSSPIMSLDFHPKKTDLFCFCDN-DNEIQYWSINPFLCTHI-TKGGTAQVRFQPRIG-QLLAA  650 (784)
Q Consensus       580 ~~~~~~~~~~~------h~~~V~sl~~sp~~~~ll~sgs~-dg~I~iwDl~~~~~~~~-~~~~v~~v~fsp~~~-~Ll~~  650 (784)
                      +.+.......+      +......+.|+|++++++++... ++.|.++| .+.+.+.. ...+. ++.+.|++. .+++.
T Consensus       106 t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~-~~~~~~~~~~~~~~~  183 (373)
T 2mad_H          106 TFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT-CYHIHPGAPSTFYLL  183 (373)
T ss_pred             CCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc-eEEEEeCCCceEEEE
Confidence            76633222111      01235689999999987777654 68899999 98887766 55433 355666664 45566


Q ss_pred             ECCCcEEEEECCCCeEEEEEe-----CCCCC-EEEEEEcCCCC-EEEEEeCCeEEEEeCCCCc--eEEEeccC-------
Q 047260          651 ASDKVVSIFDIETDRQTHSLQ-----GHAEL-VNYICWDTNGD-YLASVSQNLVKVWSMASGE--CIQELSSN-------  714 (784)
Q Consensus       651 s~Dg~I~IwDl~t~~~i~~l~-----~h~~~-V~sl~~spdg~-~Lasgsdd~I~IwDl~t~~--~i~~l~~~-------  714 (784)
                      +.||.+.++|. +++.+....     ....+ .....+.+++. ++++..++.|.+.|+....  .+..+...       
T Consensus       184 ~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~  262 (373)
T 2mad_H          184 CAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKAD  262 (373)
T ss_pred             cCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCccccc
Confidence            67999999999 877663322     11122 12344555544 4444445689999997652  23333211       


Q ss_pred             ---CCceEEEEEecCCCEEEEEEC----------CCeEEEEECCCCceEEecccCCceEEEEEeCCCC-EEEEEE-CCCc
Q 047260          715 ---GNQFHSCVFHPSYSTLLVVGG----------ISSLELWNMAENKSMTIAAHENIISALAQSPVTG-MVASAS-HDSS  779 (784)
Q Consensus       715 ---~~~I~sl~fspdg~~L~s~s~----------dg~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~-~LaSgs-~DG~  779 (784)
                         ......+.++|+++.++++..          .+.|.++|+.+++.+..........+++|+||++ +++++. .++.
T Consensus       263 ~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~  342 (373)
T 2mad_H          263 TWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEV  342 (373)
T ss_pred             ceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcCCCCe
Confidence               122344788999998888754          3579999999998874444555789999999999 788877 4899


Q ss_pred             EEEeC
Q 047260          780 VKLWK  784 (784)
Q Consensus       780 V~IWd  784 (784)
                      |.|||
T Consensus       343 V~ViD  347 (373)
T 2mad_H          343 LHIYD  347 (373)
T ss_pred             EEEEE
Confidence            99986

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.55  E-value=1.3e-12  Score=138.02  Aligned_cols=210  Identities=12%  Similarity=0.047  Sum_probs=163.4

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCceeeecCCCC-CCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCC-CCCe
Q 047260          518 DGKLLASSGHDRKVVLWNMDTLQTESTPEDHK-SVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGH-SSPI  595 (784)
Q Consensus       518 dg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~-~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h-~~~V  595 (784)
                      .+++|++++.|+.|.+||.++++.+..+..+. ..+.++.+.|+|++|+  +.++.|..||. +++ .+..+..+ ...+
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~-~~W~~~~~~~~~~   79 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGR-ELWNIAAPAGCEM   79 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSC-EEEEEECCTTCEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCC-EEEEEcCCCCccc
Confidence            46789999999999999999999999998776 5789999999999888  45788999999 666 44444443 3578


Q ss_pred             EEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---------CCeeEEEEecCCCEEEEEECCCcEEEEECCCCeE
Q 047260          596 MSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK---------GGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQ  666 (784)
Q Consensus       596 ~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---------~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~  666 (784)
                      .++.+.+++..+++.+..++.|..+|.+ ++.+..+.         .....+.+.++++++++...++.|.+||.+ ++.
T Consensus        80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~  157 (276)
T 3no2_A           80 QTARILPDGNALVAWCGHPSTILEVNMK-GEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQL  157 (276)
T ss_dssp             EEEEECTTSCEEEEEESTTEEEEEECTT-SCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred             cccEECCCCCEEEEecCCCCEEEEEeCC-CCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCE
Confidence            8999999998544434337788888864 44443332         123456788999999988889999999998 999


Q ss_pred             EEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCC------CceEEEEEecCCCEEEEEE
Q 047260          667 THSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNG------NQFHSCVFHPSYSTLLVVG  734 (784)
Q Consensus       667 i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~------~~I~sl~fspdg~~L~s~s  734 (784)
                      +..+... ..+.++.+.++|.+++++.++ .|..+|..+|+.+.++..+.      ..+..+...+++..+++..
T Consensus       158 ~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          158 LNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW  231 (276)
T ss_dssp             EEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred             EEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence            9988754 345567888999999988876 89999999999999986432      2367888889998777764

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.54  E-value=6.3e-12  Score=133.12  Aligned_cols=239  Identities=10%  Similarity=0.098  Sum_probs=170.2

Q ss_pred             ecCCCceEEEEEcCCCCEEEE-------EeCCCeEEEEECCCCceeeecC----CCCCCeEEEEEccC-CCEEEEEeCCC
Q 047260          504 RSRNSKVTCCHFSSDGKLLAS-------SGHDRKVVLWNMDTLQTESTPE----DHKSVVTDVRFRPN-SSQLATASVDK  571 (784)
Q Consensus       504 ~~H~~~V~~l~fspdg~~Las-------gs~Dg~I~IWd~~t~~~~~~l~----~h~~~It~i~fspd-g~~Latgs~Dg  571 (784)
                      ...-....+++|++++.++++       +..++.|.+||..+++......    ++...+.+++++++ ++++++ +.+.
T Consensus        14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~-~~~~   92 (314)
T 1pjx_A           14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVA-DMRL   92 (314)
T ss_dssp             ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEE-ETTT
T ss_pred             hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEE-ECCC
Confidence            344456789999999988877       5778899999988777643322    24567999999998 654444 4455


Q ss_pred             eEEEEcCCCCcceeee-ccC----CCCCeEEEEEcCCCCcEEEEEeCC---------------CeEEEEeCCCCeeEEe-
Q 047260          572 SVRLWDAANPNFCSQA-YTG----HSSPIMSLDFHPKKTDLFCFCDND---------------NEIQYWSINPFLCTHI-  630 (784)
Q Consensus       572 ~I~IWdl~~~~~~~~~-~~~----h~~~V~sl~~sp~~~~ll~sgs~d---------------g~I~iwDl~~~~~~~~-  630 (784)
                      .|.+||.+ ++ .... ...    ....+.++++++++. ++++...+               +.|..||.. .+.... 
T Consensus        93 ~l~~~d~~-g~-~~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~  168 (314)
T 1pjx_A           93 GLLVVQTD-GT-FEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD  168 (314)
T ss_dssp             EEEEEETT-SC-EEECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE
T ss_pred             CEEEEeCC-CC-EEEEEeccCCCccccCCcCEEECCCCC-EEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec
Confidence            79999988 55 2222 111    124588999999986 55555444               577888776 433322 


Q ss_pred             -ecCCeeEEEEe----cCCCEEEEEEC-CCcEEEEECC-CCe-----EEEEEeCCC-CCEEEEEEcCCCCEEEEEe-CCe
Q 047260          631 -TKGGTAQVRFQ----PRIGQLLAAAS-DKVVSIFDIE-TDR-----QTHSLQGHA-ELVNYICWDTNGDYLASVS-QNL  696 (784)
Q Consensus       631 -~~~~v~~v~fs----p~~~~Ll~~s~-Dg~I~IwDl~-t~~-----~i~~l~~h~-~~V~sl~~spdg~~Lasgs-dd~  696 (784)
                       .......++++    ++++.++++.. ++.|.+||+. +++     ....+..+. ..+..++++++|.++++.. ++.
T Consensus       169 ~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~  248 (314)
T 1pjx_A          169 TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSH  248 (314)
T ss_dssp             EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTE
T ss_pred             cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCE
Confidence             22456788999    99877777654 7899999986 443     222333343 5688999999999888775 459


Q ss_pred             EEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEEC-CCeEEEEECCCC
Q 047260          697 VKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGG-ISSLELWNMAEN  747 (784)
Q Consensus       697 I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~-dg~I~Iwdl~~~  747 (784)
                      |.+||..+++.+..+..+...+.+++|++++..|++++. ++.|..|++...
T Consensus       249 i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~  300 (314)
T 1pjx_A          249 IEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             EEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             EEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence            999999878877777766678999999999996666654 578999998753

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.51  E-value=3e-11  Score=126.38  Aligned_cols=233  Identities=6%  Similarity=0.003  Sum_probs=168.7

Q ss_pred             CCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe
Q 047260          547 DHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFL  626 (784)
Q Consensus       547 ~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~  626 (784)
                      .+...+.++++.++++++++...++.|.+||.. +.........+...+.++++.+++. ++++...++.|..||.....
T Consensus        12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~g~~   89 (299)
T 2z2n_A           12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGE-VWFTENAANKIGRITKKGII   89 (299)
T ss_dssp             SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECTTSCE
T ss_pred             CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCC-EEEeCCCCCeEEEECCCCcE
Confidence            455679999999999877776668999999988 5533222233456799999999876 66666668899999987332


Q ss_pred             eEEee---cCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEE-EeCCCCCEEEEEEcCCCCEEEEEeC-CeEEEEe
Q 047260          627 CTHIT---KGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHS-LQGHAELVNYICWDTNGDYLASVSQ-NLVKVWS  701 (784)
Q Consensus       627 ~~~~~---~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~-l~~h~~~V~sl~~spdg~~Lasgsd-d~I~IwD  701 (784)
                      .....   ...+..+++.+++..+++...++.|.+||. +++.... +......+..++++++|.++++... +.|.+||
T Consensus        90 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~  168 (299)
T 2z2n_A           90 KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRIT  168 (299)
T ss_dssp             EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred             EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEc
Confidence            22221   235788999998876666556889999998 5544332 2334567899999999988877664 4999999


Q ss_pred             CCCCceEEE-eccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceEEe--cccCCceEEEEEeCCCCEEEEEECCC
Q 047260          702 MASGECIQE-LSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTI--AAHENIISALAQSPVTGMVASASHDS  778 (784)
Q Consensus       702 l~t~~~i~~-l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~--~~h~~~V~slafspdg~~LaSgs~DG  778 (784)
                      . +++.... +......+..+++++++..+++...++.|.+||. +++...+  ..+...+.+++++++++++++...++
T Consensus       169 ~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~  246 (299)
T 2z2n_A          169 E-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGAN  246 (299)
T ss_dssp             T-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTT
T ss_pred             C-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCc
Confidence            9 6665432 3334556889999999886655556789999999 6655433  33556799999999998777665678


Q ss_pred             cEEEeC
Q 047260          779 SVKLWK  784 (784)
Q Consensus       779 ~V~IWd  784 (784)
                      .|.+||
T Consensus       247 ~i~~~d  252 (299)
T 2z2n_A          247 KIGRLT  252 (299)
T ss_dssp             EEEEEE
T ss_pred             eEEEEC
Confidence            888775

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.51  E-value=7.6e-13  Score=157.73  Aligned_cols=263  Identities=9%  Similarity=-0.042  Sum_probs=170.9

Q ss_pred             cCCCCEEEEEeCCC-----eEEEEECCCCceeeec------CCCCCCeEEEEEccCCCEEEEE-----eCCCeEEEEcCC
Q 047260          516 SSDGKLLASSGHDR-----KVVLWNMDTLQTESTP------EDHKSVVTDVRFRPNSSQLATA-----SVDKSVRLWDAA  579 (784)
Q Consensus       516 spdg~~Lasgs~Dg-----~I~IWd~~t~~~~~~l------~~h~~~It~i~fspdg~~Latg-----s~Dg~I~IWdl~  579 (784)
                      +|+|++++....++     .|.+.+...+.....+      .+|...+..++|+|||++||.+     +.+..|++||+.
T Consensus        76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~  155 (695)
T 2bkl_A           76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD  155 (695)
T ss_dssp             EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence            37898887766543     3455555444433222      2466679999999999999843     445689999999


Q ss_pred             CCcce-eeeccCCCCCeEEEEEcCCCCcEEEEEeCCCe-------------EEEEeCCCCe----eEEeec---CCeeEE
Q 047260          580 NPNFC-SQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNE-------------IQYWSINPFL----CTHITK---GGTAQV  638 (784)
Q Consensus       580 ~~~~~-~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~-------------I~iwDl~~~~----~~~~~~---~~v~~v  638 (784)
                      +++.. ...+...  ....++|+|++..++++. .+..             |++|++.+..    .+....   ..+..+
T Consensus       156 tg~~~~~~~~~~~--~~~~~~wspDg~~l~~~~-~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~  232 (695)
T 2bkl_A          156 SGEWSKVDVIEGG--KYATPKWTPDSKGFYYEW-LPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQS  232 (695)
T ss_dssp             TCCBCSSCCBSCC--TTCCCEECTTSSEEEEEE-CCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEE
T ss_pred             CCCCcCCcccCcc--cccceEEecCCCEEEEEE-ecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEE
Confidence            87743 1122211  126899999998655554 4443             9999998754    222221   356789


Q ss_pred             EEecCCCEEEEEECCC----cEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe----CCeEEEEeCCCCce---
Q 047260          639 RFQPRIGQLLAAASDK----VVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVS----QNLVKVWSMASGEC---  707 (784)
Q Consensus       639 ~fsp~~~~Ll~~s~Dg----~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgs----dd~I~IwDl~t~~~---  707 (784)
                      .|+|+|++|++++.++    .|.++|..+++. ..+..+...+....| ++|.+++...    +..|.+||+.++..   
T Consensus       233 ~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~  310 (695)
T 2bkl_A          233 DLSRDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASW  310 (695)
T ss_dssp             EECTTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGC
T ss_pred             EECCCCCEEEEEEeCCCCceEEEEEcCCCCce-EEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCC
Confidence            9999999998888765    677777665543 344445556666666 5566444443    13899999988753   


Q ss_pred             EEEeccC-CCceEEEEEecCCCEEEEEECCCeEEEEECC-CCc-eEEeccc-CCceEEEEEeCCCCEEEEEE----CCCc
Q 047260          708 IQELSSN-GNQFHSCVFHPSYSTLLVVGGISSLELWNMA-ENK-SMTIAAH-ENIISALAQSPVTGMVASAS----HDSS  779 (784)
Q Consensus       708 i~~l~~~-~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~-~~~-~~~~~~h-~~~V~slafspdg~~LaSgs----~DG~  779 (784)
                      ...+..+ ...+..++|+ ++..+++...|+..+||.+. ++. ...+..+ .+.|..++++|++..|+...    ..+.
T Consensus       311 ~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~  389 (695)
T 2bkl_A          311 KEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQ  389 (695)
T ss_dssp             EEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEE
T ss_pred             eEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCE
Confidence            3333333 4567888888 66677788888877766543 233 3344444 67788899999987666332    2467


Q ss_pred             EEEeC
Q 047260          780 VKLWK  784 (784)
Q Consensus       780 V~IWd  784 (784)
                      |++||
T Consensus       390 v~~~d  394 (695)
T 2bkl_A          390 IYKTS  394 (695)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            88775

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.50  E-value=4.4e-11  Score=131.85  Aligned_cols=233  Identities=10%  Similarity=0.052  Sum_probs=169.2

Q ss_pred             EEEEcCCCCEEEEEe----------CCCeEEEEECCCCceeeecCCC-------CCCeEEEEEccCCCEEEEEeC--CCe
Q 047260          512 CCHFSSDGKLLASSG----------HDRKVVLWNMDTLQTESTPEDH-------KSVVTDVRFRPNSSQLATASV--DKS  572 (784)
Q Consensus       512 ~l~fspdg~~Lasgs----------~Dg~I~IWd~~t~~~~~~l~~h-------~~~It~i~fspdg~~Latgs~--Dg~  572 (784)
                      .++|+|||++|+++.          .++.|.+||..+++.+..+...       ......+.|+|||++|++++.  ++.
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~  149 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA  149 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence            899999999998886          3678999999998887766422       123458999999999999874  478


Q ss_pred             EEEEcCCCCcceeee-ccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec--------CCe-eEEEEec
Q 047260          573 VRLWDAANPNFCSQA-YTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK--------GGT-AQVRFQP  642 (784)
Q Consensus       573 I~IWdl~~~~~~~~~-~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~--------~~v-~~v~fsp  642 (784)
                      |.++| .+++ .... +.. .   .|+.+.|++...+++.+.||.+.++|. +.+......        .++ ....+.+
T Consensus       150 v~viD-~t~~-~~~~~i~~-~---~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~  222 (373)
T 2mad_H          150 VGLVV-QGGS-SDDQLLSS-P---TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQAN  222 (373)
T ss_pred             EEEEE-CCCC-EEeEEcCC-C---ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEe
Confidence            99999 8876 3333 321 1   235666777777888888999999999 665552211        111 2235667


Q ss_pred             CCCEEEEEECCCcEEEEECCCC--eEEEEEeC----------CCCCEEEEEEcCCCCEEEEEeC-----------CeEEE
Q 047260          643 RIGQLLAAASDKVVSIFDIETD--RQTHSLQG----------HAELVNYICWDTNGDYLASVSQ-----------NLVKV  699 (784)
Q Consensus       643 ~~~~Ll~~s~Dg~I~IwDl~t~--~~i~~l~~----------h~~~V~sl~~spdg~~Lasgsd-----------d~I~I  699 (784)
                      ++..++..+.++.|.++|+...  +.+..+..          .......+.++++++.+++..+           +.|.+
T Consensus       223 ~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~V  302 (373)
T 2mad_H          223 KSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTS  302 (373)
T ss_pred             cCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEE
Confidence            7777666667889999999765  22333321          1123445788999888777542           37999


Q ss_pred             EeCCCCceEEEeccCCCceEEEEEecCCC-EEEEEE-CCCeEEEEECCCCceEEe
Q 047260          700 WSMASGECIQELSSNGNQFHSCVFHPSYS-TLLVVG-GISSLELWNMAENKSMTI  752 (784)
Q Consensus       700 wDl~t~~~i~~l~~~~~~I~sl~fspdg~-~L~s~s-~dg~I~Iwdl~~~~~~~~  752 (784)
                      +|+.+++.+.++... .....++|+||++ .++++. .++.|.+||+.+++.+..
T Consensus       303 ID~~t~~vv~~i~~g-~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~  356 (373)
T 2mad_H          303 VTGLVGQTSSQISLG-HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS  356 (373)
T ss_pred             EECCCCEEEEEEECC-CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence            999999999998644 4579999999999 677776 478999999999988744

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.50  E-value=5.9e-12  Score=138.37  Aligned_cols=261  Identities=11%  Similarity=0.114  Sum_probs=178.0

Q ss_pred             EEeEeecCCCceEEEEEcCCCCEEEEEe----------CCCeEEEEECCCCceeeecCCC-------CCCeEEEEEccCC
Q 047260          499 EVGCIRSRNSKVTCCHFSSDGKLLASSG----------HDRKVVLWNMDTLQTESTPEDH-------KSVVTDVRFRPNS  561 (784)
Q Consensus       499 ~i~~l~~H~~~V~~l~fspdg~~Lasgs----------~Dg~I~IWd~~t~~~~~~l~~h-------~~~It~i~fspdg  561 (784)
                      .+..+..-..+ . ++++|||++|+++.          .++.|.+||..+++.+..+...       ......+.|+|||
T Consensus        71 v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDG  148 (386)
T 3sjl_D           71 VIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDG  148 (386)
T ss_dssp             EEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTS
T ss_pred             EEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCC
Confidence            34444444444 4 99999999887765          3678999999999988877422       1245679999999


Q ss_pred             CEEEEEeC--CCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCC-CeeEEeec------
Q 047260          562 SQLATASV--DKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINP-FLCTHITK------  632 (784)
Q Consensus       562 ~~Latgs~--Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~-~~~~~~~~------  632 (784)
                      ++|+++..  ++.|.++|+.+.+. ...+.-. +   |..+.|.+...+++.+.||.+.+.++.+ .+......      
T Consensus       149 k~lyVan~~~~~~VsVID~~t~~v-v~tI~v~-g---~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~  223 (386)
T 3sjl_D          149 KTLLFYQFSPAPAVGVVDLEGKAF-KRMLDVP-D---CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPE  223 (386)
T ss_dssp             SEEEEEECSSSCEEEEEETTTTEE-EEEEECC-S---EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCT
T ss_pred             CEEEEEEcCCCCeEEEEECCCCcE-EEEEECC-C---cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccc
Confidence            99998874  68999999999773 3333221 1   1233455555666777789999998875 44322111      


Q ss_pred             -CCe-eEEEEecCCCEEEEEECCCcEEEEECCCCe--EEEEEe---------C-CCCCEEEEEEcCCCCEEEEEeC----
Q 047260          633 -GGT-AQVRFQPRIGQLLAAASDKVVSIFDIETDR--QTHSLQ---------G-HAELVNYICWDTNGDYLASVSQ----  694 (784)
Q Consensus       633 -~~v-~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~--~i~~l~---------~-h~~~V~sl~~spdg~~Lasgsd----  694 (784)
                       .++ ....|.+..+.++..+.+|.|+++|+....  .+..+.         + ....+..+++++++..+++...    
T Consensus       224 ~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~  303 (386)
T 3sjl_D          224 DEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDE  303 (386)
T ss_dssp             TSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCT
T ss_pred             cccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccc
Confidence             111 123554333455556778999999997653  333332         0 1123334777899888877642    


Q ss_pred             -------CeEEEEeCCCCceEEEeccCCCceEEEEEecCCC-EEEEEEC-CCeEEEEECCCCceEEecccCCceEEEEEe
Q 047260          695 -------NLVKVWSMASGECIQELSSNGNQFHSCVFHPSYS-TLLVVGG-ISSLELWNMAENKSMTIAAHENIISALAQS  765 (784)
Q Consensus       695 -------d~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~-~L~s~s~-dg~I~Iwdl~~~~~~~~~~h~~~V~slafs  765 (784)
                             +.|.++|+.+++.+..+... ..+..|.++++++ +|+++.. ++.|.++|..+++.+......+..+.|.++
T Consensus       304 ~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~p~~l~~s  382 (386)
T 3sjl_D          304 WRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITT  382 (386)
T ss_dssp             TCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEEE
T ss_pred             cccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCCCceeEEC
Confidence                   37999999999999988754 3678999999997 6666554 789999999999988555555555566666


Q ss_pred             CC
Q 047260          766 PV  767 (784)
Q Consensus       766 pd  767 (784)
                      +|
T Consensus       383 ~d  384 (386)
T 3sjl_D          383 AD  384 (386)
T ss_dssp             CC
T ss_pred             Cc
Confidence            65

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.47  E-value=1.5e-12  Score=156.44  Aligned_cols=242  Identities=13%  Similarity=0.034  Sum_probs=163.4

Q ss_pred             CCCceEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCe--------
Q 047260          506 RNSKVTCCHFSSDGKLLASSGHD-----RKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKS--------  572 (784)
Q Consensus       506 H~~~V~~l~fspdg~~Lasgs~D-----g~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~--------  572 (784)
                      |...+..++|||||++||.+..+     ..|++||+.+++.+... .+...+..++|+|| +.|+.++.|+.        
T Consensus       161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~  238 (741)
T 1yr2_A          161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA  238 (741)
T ss_dssp             --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred             CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCccccccccc
Confidence            44468899999999999887654     46999999998876532 12222357899999 99998887654        


Q ss_pred             ------EEEEcCCCCcc---eeeeccCCCCCeEEEEEcCCCCcEEEEEeC----CCeEEEEeCCCC--e-eEEe--ecCC
Q 047260          573 ------VRLWDAANPNF---CSQAYTGHSSPIMSLDFHPKKTDLFCFCDN----DNEIQYWSINPF--L-CTHI--TKGG  634 (784)
Q Consensus       573 ------I~IWdl~~~~~---~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~----dg~I~iwDl~~~--~-~~~~--~~~~  634 (784)
                            |++|++.++..   .+.....+...+..+.|+|++..+++++..    ...|++||+.+.  . ....  ....
T Consensus       239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~  318 (741)
T 1yr2_A          239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKA  318 (741)
T ss_dssp             CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSS
T ss_pred             CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCc
Confidence                  88999977552   222222333458899999999977776653    348999999765  3 2222  2233


Q ss_pred             eeEEEEecCCCEEEEEECC----CcEEEEECCCC--eEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeE--EEEeCCCC
Q 047260          635 TAQVRFQPRIGQLLAAASD----KVVSIFDIETD--RQTHSLQGHAELVNYICWDTNGDYLASVS-QNLV--KVWSMASG  705 (784)
Q Consensus       635 v~~v~fsp~~~~Ll~~s~D----g~I~IwDl~t~--~~i~~l~~h~~~V~sl~~spdg~~Lasgs-dd~I--~IwDl~t~  705 (784)
                      .... +.|+++.|+..+.+    +.|.+||+.++  .....+..+...+..++|+ ++.++++.. ++..  .++++ ++
T Consensus       319 ~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~-~g  395 (741)
T 1yr2_A          319 QWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDL-DG  395 (741)
T ss_dssp             CEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEET-TS
T ss_pred             eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeC-CC
Confidence            3333 45899998888763    45999999874  3344444455567778887 555666665 4454  44554 45


Q ss_pred             ceEEEeccC-CCceEEEEEecCCCEEEEEEC----CCeEEEEECCCCceEEe
Q 047260          706 ECIQELSSN-GNQFHSCVFHPSYSTLLVVGG----ISSLELWNMAENKSMTI  752 (784)
Q Consensus       706 ~~i~~l~~~-~~~I~sl~fspdg~~L~s~s~----dg~I~Iwdl~~~~~~~~  752 (784)
                      ..+..+..+ ...+..+.++|++..|+....    .++|++||+.+++...+
T Consensus       396 ~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~l  447 (741)
T 1yr2_A          396 KPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKTTPW  447 (741)
T ss_dssp             CEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEEEEC
T ss_pred             CceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEE
Confidence            666666643 567888999999876664433    26899999988765433

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.47  E-value=1.8e-11  Score=129.51  Aligned_cols=232  Identities=11%  Similarity=0.042  Sum_probs=160.9

Q ss_pred             CCCeEEEEEccCCCEEEE-------EeCCCeEEEEcCCCCcceeeec---cCCCCCeEEEEEcCCCCcEEEEEeCCCeEE
Q 047260          549 KSVVTDVRFRPNSSQLAT-------ASVDKSVRLWDAANPNFCSQAY---TGHSSPIMSLDFHPKKTDLFCFCDNDNEIQ  618 (784)
Q Consensus       549 ~~~It~i~fspdg~~Lat-------gs~Dg~I~IWdl~~~~~~~~~~---~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~  618 (784)
                      -....+++|++++.++++       +..++.|.+||..+++......   .++...+.++++++++..++++.. +..|.
T Consensus        17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l~   95 (314)
T 1pjx_A           17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGLL   95 (314)
T ss_dssp             CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTEEE
T ss_pred             CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCCEE
Confidence            345689999999987777       5778999999987766322111   124467899999998333555444 45799


Q ss_pred             EEeCCCCeeEEe-ec-------CCeeEEEEecCCCEEEEEECC---------------CcEEEEECCCCeEEEEEeCCCC
Q 047260          619 YWSINPFLCTHI-TK-------GGTAQVRFQPRIGQLLAAASD---------------KVVSIFDIETDRQTHSLQGHAE  675 (784)
Q Consensus       619 iwDl~~~~~~~~-~~-------~~v~~v~fsp~~~~Ll~~s~D---------------g~I~IwDl~t~~~i~~l~~h~~  675 (784)
                      +||.+ .+.... ..       ..+..+++++++..+++...+               +.|..||.. ++..... .+..
T Consensus        96 ~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-~~~~  172 (314)
T 1pjx_A           96 VVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-TAFQ  172 (314)
T ss_dssp             EEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EEES
T ss_pred             EEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec-cCCC
Confidence            99988 555433 21       236789999998766665544               567778766 5443332 2344


Q ss_pred             CEEEEEEc----CCCCEEEEEe--CCeEEEEeCC-CCc-----eEEEeccCC-CceEEEEEecCCCEEEEEECCCeEEEE
Q 047260          676 LVNYICWD----TNGDYLASVS--QNLVKVWSMA-SGE-----CIQELSSNG-NQFHSCVFHPSYSTLLVVGGISSLELW  742 (784)
Q Consensus       676 ~V~sl~~s----pdg~~Lasgs--dd~I~IwDl~-t~~-----~i~~l~~~~-~~I~sl~fspdg~~L~s~s~dg~I~Iw  742 (784)
                      ....++|+    ++++.|+++.  ++.|.+||+. +++     ....+..+. ..+..+++++++..+++...++.|.+|
T Consensus       173 ~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~  252 (314)
T 1pjx_A          173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVF  252 (314)
T ss_dssp             SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEE
T ss_pred             CcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEE
Confidence            56889999    9997665554  3599999986 443     223333333 567889999999877777788899999


Q ss_pred             ECCCCceE-EecccCCceEEEEEeCCCCEEEEE-ECCCcEEEeC
Q 047260          743 NMAENKSM-TIAAHENIISALAQSPVTGMVASA-SHDSSVKLWK  784 (784)
Q Consensus       743 dl~~~~~~-~~~~h~~~V~slafspdg~~LaSg-s~DG~V~IWd  784 (784)
                      |..+++.. .+..+...+.+++|+++++.|+.+ ..++.|..|+
T Consensus       253 d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~  296 (314)
T 1pjx_A          253 GPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFE  296 (314)
T ss_dssp             CTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             cCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEe
Confidence            99866554 444566789999999999955544 4567787764

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.44  E-value=1.8e-11  Score=129.19  Aligned_cols=208  Identities=11%  Similarity=0.073  Sum_probs=161.7

Q ss_pred             CCCEEEEEeCCCeEEEEcCCCCcceeeeccCCC-CCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecC----C
Q 047260          560 NSSQLATASVDKSVRLWDAANPNFCSQAYTGHS-SPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKG----G  634 (784)
Q Consensus       560 dg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~-~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~----~  634 (784)
                      .+++|++++.|+.|.+||.++++ .+..+..+. ..+.++.+.|++. +++  +.++.|..||. +++.+..+..    .
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~-~~w~~~~~~~~~~~~~~~~pdG~-ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~   78 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKE-IVWEYPLEKGWECNSVAATKAGE-ILF--SYSKGAKMITR-DGRELWNIAAPAGCE   78 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTE-EEEEEECCTTCCCCEEEECTTSC-EEE--ECBSEEEEECT-TSCEEEEEECCTTCE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCe-EEEEeCCCccCCCcCeEECCCCC-EEE--eCCCCEEEECC-CCCEEEEEcCCCCcc
Confidence            46789999999999999998887 445555544 4788999999987 555  34788999999 6666666552    4


Q ss_pred             eeEEEEecCCCEEEEEEC-CCcEEEEECCCCeEEEEEeC------CCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCc
Q 047260          635 TAQVRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHSLQG------HAELVNYICWDTNGDYLASVSQN-LVKVWSMASGE  706 (784)
Q Consensus       635 v~~v~fsp~~~~Ll~~s~-Dg~I~IwDl~t~~~i~~l~~------h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~  706 (784)
                      +.++.+.++++.+++.+. ++.|..+|. +++.+..+..      +......+++.++|.+|++...+ .|.+||.. |+
T Consensus        79 ~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~  156 (276)
T 3no2_A           79 MQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQ  156 (276)
T ss_dssp             EEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred             ccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CC
Confidence            667889999999999887 788888886 6777776652      11234556788999999988755 99999998 99


Q ss_pred             eEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE-EecccC------CceEEEEEeCCCCEEEEEE
Q 047260          707 CIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM-TIAAHE------NIISALAQSPVTGMVASAS  775 (784)
Q Consensus       707 ~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~------~~V~slafspdg~~LaSgs  775 (784)
                      .+.++... ..+.++.+.+++..++++..++.|..||..+++.+ .+..+.      ..+..++..++|.++++..
T Consensus       157 ~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          157 LLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW  231 (276)
T ss_dssp             EEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred             EEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence            99998765 45567888999998988888889999999988887 333221      2378888999999888773

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.44  E-value=1.4e-11  Score=137.45  Aligned_cols=265  Identities=8%  Similarity=0.059  Sum_probs=185.2

Q ss_pred             CCCCEEEEEeCC-----CeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEe----------CCCeEEEEcCCCC
Q 047260          517 SDGKLLASSGHD-----RKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATAS----------VDKSVRLWDAANP  581 (784)
Q Consensus       517 pdg~~Lasgs~D-----g~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs----------~Dg~I~IWdl~~~  581 (784)
                      ++++.++++...     +.|.++|..+++.+..+..-..+  .+.++||+++|+++.          .++.|.++|..+.
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~  159 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF  159 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence            466666655542     69999999999999998765555  899999999998886          3678999999987


Q ss_pred             cceeeeccC------CCCCeEEEEEcCCCCcEEEEEeC-CCeEEEEeCCCCeeEEeecCCeeEEEEecCC-CEEEEEECC
Q 047260          582 NFCSQAYTG------HSSPIMSLDFHPKKTDLFCFCDN-DNEIQYWSINPFLCTHITKGGTAQVRFQPRI-GQLLAAASD  653 (784)
Q Consensus       582 ~~~~~~~~~------h~~~V~sl~~sp~~~~ll~sgs~-dg~I~iwDl~~~~~~~~~~~~v~~v~fsp~~-~~Ll~~s~D  653 (784)
                      +.......+      .......+.|+|++++++++... ++.|.+.|+.+.+.+..+.-+-. ....|++ ..+++.+.|
T Consensus       160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~-~~~~p~g~~~~v~~~~d  238 (426)
T 3c75_H          160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC-YHIFPASPTVFYMNCRD  238 (426)
T ss_dssp             CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE-EEEEEEETTEEEEEETT
T ss_pred             cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc-eeeccCCCcEEEEEcCC
Confidence            743333222      11345678999999977777654 78999999999888877664322 3344443 556777789


Q ss_pred             CcEEEEECCCCeEEEE----EeCCCCCE-EEEEEcCCCCEEEEEe-CCeEEEEeCCCCceE--EEecc---C-------C
Q 047260          654 KVVSIFDIETDRQTHS----LQGHAELV-NYICWDTNGDYLASVS-QNLVKVWSMASGECI--QELSS---N-------G  715 (784)
Q Consensus       654 g~I~IwDl~t~~~i~~----l~~h~~~V-~sl~~spdg~~Lasgs-dd~I~IwDl~t~~~i--~~l~~---~-------~  715 (784)
                      |.+.+.++.+++....    +.....++ ..+.+.+++..++..+ .+.|.+.|+......  ..+..   .       .
T Consensus       239 G~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p  318 (426)
T 3c75_H          239 GSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRP  318 (426)
T ss_dssp             SSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEE
T ss_pred             CCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeecccccccccccc
Confidence            9999999866655432    11111121 2356788887766655 449999998765421  11110   0       0


Q ss_pred             CceEEEEEecCCCEEEEEEC----------CCeEEEEECCCCceEEecccCCceEEEEEeCCCC-EEEEEE-CCCcEEEe
Q 047260          716 NQFHSCVFHPSYSTLLVVGG----------ISSLELWNMAENKSMTIAAHENIISALAQSPVTG-MVASAS-HDSSVKLW  783 (784)
Q Consensus       716 ~~I~sl~fspdg~~L~s~s~----------dg~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~-~LaSgs-~DG~V~IW  783 (784)
                      .....++++|+++.+++...          ++.|.++|+.+.+.+....-.....+++|+||++ +++++. .++.|.|+
T Consensus       319 ~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~VsVI  398 (426)
T 3c75_H          319 GGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQTLHIY  398 (426)
T ss_dssp             CSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEE
T ss_pred             CCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCeEEEE
Confidence            11223689999998887753          3579999999999884443344688999999999 888888 48999998


Q ss_pred             C
Q 047260          784 K  784 (784)
Q Consensus       784 d  784 (784)
                      |
T Consensus       399 D  399 (426)
T 3c75_H          399 D  399 (426)
T ss_dssp             E
T ss_pred             E
Confidence            6

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.42  E-value=1.3e-11  Score=148.18  Aligned_cols=264  Identities=11%  Similarity=0.029  Sum_probs=168.7

Q ss_pred             cCCCCEEEEEeCCCe---EEEE--ECC---CCceeee------cCCCCCCeEEEEEccCCCEEEEEeCC-----CeEEEE
Q 047260          516 SSDGKLLASSGHDRK---VVLW--NMD---TLQTEST------PEDHKSVVTDVRFRPNSSQLATASVD-----KSVRLW  576 (784)
Q Consensus       516 spdg~~Lasgs~Dg~---I~IW--d~~---t~~~~~~------l~~h~~~It~i~fspdg~~Latgs~D-----g~I~IW  576 (784)
                      +|||++++....++.   -.||  +..   .+.....      -.+|...+..++|+|||++|+.++.+     ..|++|
T Consensus       115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~  194 (741)
T 1yr2_A          115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV  194 (741)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence            388998877654432   4445  443   3332221      12344478899999999999887654     469999


Q ss_pred             cCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCC-------------eEEEEeCCCCe----eEEeecC---Cee
Q 047260          577 DAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDN-------------EIQYWSINPFL----CTHITKG---GTA  636 (784)
Q Consensus       577 dl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg-------------~I~iwDl~~~~----~~~~~~~---~v~  636 (784)
                      |+.+++......  +...+..++|+|+ ..++++...+.             .|++|++.+..    .+.....   .+.
T Consensus       195 dl~tg~~~~~~~--~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~  271 (741)
T 1yr2_A          195 GVADGKPLADEL--KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGH  271 (741)
T ss_dssp             ETTTCCEEEEEE--EEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEE
T ss_pred             ECCCCCCCCccC--CCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEE
Confidence            999877432211  1122357899999 76666654332             48999997644    2222222   367


Q ss_pred             EEEEecCCCEEEEEECCC-----cEEEEECCCC--eEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-----eEEEEeCCC
Q 047260          637 QVRFQPRIGQLLAAASDK-----VVSIFDIETD--RQTHSLQGHAELVNYICWDTNGDYLASVSQN-----LVKVWSMAS  704 (784)
Q Consensus       637 ~v~fsp~~~~Ll~~s~Dg-----~I~IwDl~t~--~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-----~I~IwDl~t  704 (784)
                      .+.|+|+|++|+..+.++     .|++||+.++  +....+..+...+.... +|+|..|+..++.     .|.+||+.+
T Consensus       272 ~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~  350 (741)
T 1yr2_A          272 GASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSG  350 (741)
T ss_dssp             EEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSS
T ss_pred             EEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCC
Confidence            889999999988877543     8999999877  31455555555555554 4888888777632     699999987


Q ss_pred             C--ceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEE--ECCCCceEEecc-cCCceEEEEEeCCCCEEE-EEE---
Q 047260          705 G--ECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELW--NMAENKSMTIAA-HENIISALAQSPVTGMVA-SAS---  775 (784)
Q Consensus       705 ~--~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iw--dl~~~~~~~~~~-h~~~V~slafspdg~~La-Sgs---  775 (784)
                      +  .....+..+...+..+.|. ++..+++...++..+||  ++..+....+.. +.+.|..++++|++..|+ +.+   
T Consensus       351 ~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~  429 (741)
T 1yr2_A          351 STPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFT  429 (741)
T ss_dssp             SSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETT
T ss_pred             CccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCC
Confidence            5  3344444444556677777 55567777778866655  543333334443 467789999999987554 332   


Q ss_pred             CCCcEEEeC
Q 047260          776 HDSSVKLWK  784 (784)
Q Consensus       776 ~DG~V~IWd  784 (784)
                      ..+.|++||
T Consensus       430 ~P~~i~~~d  438 (741)
T 1yr2_A          430 QPATVLALD  438 (741)
T ss_dssp             EEEEEEEEE
T ss_pred             CCCEEEEEE
Confidence            246777775

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.41  E-value=1.5e-10  Score=129.07  Aligned_cols=230  Identities=10%  Similarity=0.081  Sum_probs=164.2

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCC--eEEEEcCCCCccee
Q 047260          508 SKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDK--SVRLWDAANPNFCS  585 (784)
Q Consensus       508 ~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg--~I~IWdl~~~~~~~  585 (784)
                      .....++|+++++++++...++.|++||.+++.......... ... ++|+++++.|+++..++  .|.+|+...... .
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~-~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~-~  207 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFK-GGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA-P  207 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCC-BCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC-E
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCC-CCc-eeEecCCCcEEEEecCCCceEEEEEcCCCce-e
Confidence            468899999999977777778999999999877665554433 333 99999999999988866  788888775442 2


Q ss_pred             eec----cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEe----ec---CCe-e-EEEEecCCCEEEEEEC
Q 047260          586 QAY----TGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHI----TK---GGT-A-QVRFQPRIGQLLAAAS  652 (784)
Q Consensus       586 ~~~----~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~----~~---~~v-~-~v~fsp~~~~Ll~~s~  652 (784)
                      ..+    ......+.+++++|++..+++ +..++.|+.||.........    ..   ... . .++|+|+++.|+++..
T Consensus       208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~  286 (409)
T 3hrp_A          208 TRIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ  286 (409)
T ss_dssp             EEEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEET
T ss_pred             EEeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeC
Confidence            222    224466788999996565665 67789999999986654332    11   111 2 8999997677776665


Q ss_pred             -CCcEEEEECCCCeEEEEEeCCC---------------CCEEEEEEcCCCCEEEEEe-CC-eEEEEeCCCCceEEEeccC
Q 047260          653 -DKVVSIFDIETDRQTHSLQGHA---------------ELVNYICWDTNGDYLASVS-QN-LVKVWSMASGECIQELSSN  714 (784)
Q Consensus       653 -Dg~I~IwDl~t~~~i~~l~~h~---------------~~V~sl~~spdg~~Lasgs-dd-~I~IwDl~t~~~i~~l~~~  714 (784)
                       ++.|+.||....  +..+.++.               .....++++++|+++++-. .+ .|++||+.++.. .++.++
T Consensus       287 ~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~g~  363 (409)
T 3hrp_A          287 NLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-STVAGQ  363 (409)
T ss_dssp             TTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-EEEEEC
T ss_pred             CCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEEeCC
Confidence             788999997644  33333332               3478999999999777765 55 999999887764 334332


Q ss_pred             ---------------CCceEEEEEecCCCEEEEEECCCeEEEEEC
Q 047260          715 ---------------GNQFHSCVFHPSYSTLLVVGGISSLELWNM  744 (784)
Q Consensus       715 ---------------~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl  744 (784)
                                     -.....+++++++..+++-..++.|+.+++
T Consensus       364 ~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          364 VDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             TTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             CCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence                           135788999999766666666678888765

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.41  E-value=6.6e-10  Score=116.14  Aligned_cols=232  Identities=8%  Similarity=-0.028  Sum_probs=166.4

Q ss_pred             CCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe
Q 047260          547 DHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFL  626 (784)
Q Consensus       547 ~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~  626 (784)
                      .....+.+|++.++++++++...++.|.+||.. ++............+.++++.+++. ++++...++.|..||.. .+
T Consensus        17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~v~~~d~~-g~   93 (300)
T 2qc5_A           17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGD-IWFTENGANKIGKLSKK-GG   93 (300)
T ss_dssp             STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SC
T ss_pred             CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCC-EEEEecCCCeEEEECCC-CC
Confidence            345678999999999988877778999999988 4433222333446789999998876 66666667899999988 44


Q ss_pred             eEE-ee---cCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEE-EEeCCCCCEEEEEEcCCCCEEEEEeC-CeEEEE
Q 047260          627 CTH-IT---KGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTH-SLQGHAELVNYICWDTNGDYLASVSQ-NLVKVW  700 (784)
Q Consensus       627 ~~~-~~---~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~-~l~~h~~~V~sl~~spdg~~Lasgsd-d~I~Iw  700 (784)
                      ... ..   ...+..+++.+++..+++...++.|..||.. ++... .+......+.+++++++|+++++... +.|.+|
T Consensus        94 ~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~  172 (300)
T 2qc5_A           94 FTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRI  172 (300)
T ss_dssp             EEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEE
T ss_pred             eEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEE
Confidence            332 22   2457888999988766665557899999988 55442 23334567899999999997766654 489999


Q ss_pred             eCCCCceEEE-eccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceEEe--cccCCceEEEEEeCCCCEEEEEECC
Q 047260          701 SMASGECIQE-LSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTI--AAHENIISALAQSPVTGMVASASHD  777 (784)
Q Consensus       701 Dl~t~~~i~~-l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~--~~h~~~V~slafspdg~~LaSgs~D  777 (784)
                      |. +++.... +......+..+++.+++..+++....+.|.+||. ++.....  ..+...+.+++++++++++++...+
T Consensus       173 ~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~  250 (300)
T 2qc5_A          173 TN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGA  250 (300)
T ss_dssp             CT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTT
T ss_pred             CC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCC
Confidence            98 5554432 2234456889999999876555555678999998 4544432  3445678999999999877766567


Q ss_pred             CcEEEeC
Q 047260          778 SSVKLWK  784 (784)
Q Consensus       778 G~V~IWd  784 (784)
                      +.|.+||
T Consensus       251 ~~i~~~~  257 (300)
T 2qc5_A          251 NQIGRIT  257 (300)
T ss_dssp             TEEEEEC
T ss_pred             CeEEEEC
Confidence            8888775

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.40  E-value=3.6e-10  Score=119.85  Aligned_cols=226  Identities=15%  Similarity=0.123  Sum_probs=158.1

Q ss_pred             cCCCceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcc
Q 047260          505 SRNSKVTCCHFSSDG-KLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNF  583 (784)
Q Consensus       505 ~H~~~V~~l~fspdg-~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~  583 (784)
                      .+..-..+..|++++ .++++...++.|..||..+++.. .+ .....+.+++++++++++++ . +..|.+||.++++.
T Consensus        10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~   85 (297)
T 3g4e_A           10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSA   85 (297)
T ss_dssp             CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEE
T ss_pred             cCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcE
Confidence            344556788999954 46666667899999999877653 23 34578999999999995554 4 56899999987652


Q ss_pred             eeeeccC----CCCCeEEEEEcCCCCcEEEEE-eC----------CCeEEEEeCCCCe-eEEeecCCeeEEEEecCCCEE
Q 047260          584 CSQAYTG----HSSPIMSLDFHPKKTDLFCFC-DN----------DNEIQYWSINPFL-CTHITKGGTAQVRFQPRIGQL  647 (784)
Q Consensus       584 ~~~~~~~----h~~~V~sl~~sp~~~~ll~sg-s~----------dg~I~iwDl~~~~-~~~~~~~~v~~v~fsp~~~~L  647 (784)
                      . .....    ....+..++++|++. ++++. ..          .+.|+.++..... .+.........++|+|+++.+
T Consensus        86 ~-~~~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~l  163 (297)
T 3g4e_A           86 V-VLATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIF  163 (297)
T ss_dssp             E-EEEECCTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEE
T ss_pred             E-EEEecCCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEE
Confidence            2 11111    123578899999988 44443 21          2345555543211 112222456789999999988


Q ss_pred             EEEEC-CCcEEEEEC--CCCeE-----EEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCce
Q 047260          648 LAAAS-DKVVSIFDI--ETDRQ-----THSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQF  718 (784)
Q Consensus       648 l~~s~-Dg~I~IwDl--~t~~~-----i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I  718 (784)
                      +++.. ++.|.+||+  .++..     ...+..+......++++++|++.++...+ .|.+||..+++.+..+..+...+
T Consensus       164 yv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~  243 (297)
T 3g4e_A          164 YYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKT  243 (297)
T ss_dssp             EEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBE
T ss_pred             EEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCc
Confidence            77665 789999997  45532     22223344577899999999988877655 89999999999999998887889


Q ss_pred             EEEEEe-cCCCEEEEEECC
Q 047260          719 HSCVFH-PSYSTLLVVGGI  736 (784)
Q Consensus       719 ~sl~fs-pdg~~L~s~s~d  736 (784)
                      ++|+|. |+++.|++++..
T Consensus       244 t~~~f~g~d~~~L~vt~~~  262 (297)
T 3g4e_A          244 TSCCFGGKNYSEMYVTCAR  262 (297)
T ss_dssp             EEEEEESGGGCEEEEEEBC
T ss_pred             eEEEEeCCCCCEEEEEcCC
Confidence            999998 888887777653

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.40  E-value=8.4e-12  Score=135.56  Aligned_cols=256  Identities=11%  Similarity=0.005  Sum_probs=170.1

Q ss_pred             CceEEEEEcCCCCEEEEEe--CCCeEEEEECCCCceee------ecCCCCCCeEEEEEccCCCEEEEEeC-----CCeEE
Q 047260          508 SKVTCCHFSSDGKLLASSG--HDRKVVLWNMDTLQTES------TPEDHKSVVTDVRFRPNSSQLATASV-----DKSVR  574 (784)
Q Consensus       508 ~~V~~l~fspdg~~Lasgs--~Dg~I~IWd~~t~~~~~------~l~~h~~~It~i~fspdg~~Latgs~-----Dg~I~  574 (784)
                      ..+..++++++|+++++..  .++.++||.+.+++...      ....|-..+..|+|+++++++++-..     ++.|.
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~   96 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLV   96 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEE
Confidence            6799999999999888864  23435555554554331      11235578999999999876665433     57899


Q ss_pred             EEcCCCCcceeeecc------CCCCCeEEEEEcCCCCcEEEEEe---CCCeEEEEeCCCCeeEEeecCC--ee--EEEEe
Q 047260          575 LWDAANPNFCSQAYT------GHSSPIMSLDFHPKKTDLFCFCD---NDNEIQYWSINPFLCTHITKGG--TA--QVRFQ  641 (784)
Q Consensus       575 IWdl~~~~~~~~~~~------~h~~~V~sl~~sp~~~~ll~sgs---~dg~I~iwDl~~~~~~~~~~~~--v~--~v~fs  641 (784)
                      +||+.+++. ...+.      .+...+..+++++++..++++..   .++.|.+||+.+.+.......+  ..  ...+.
T Consensus        97 ~~d~~tg~~-~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~  175 (343)
T 2qe8_A           97 AWDTLNNQL-SRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLV  175 (343)
T ss_dssp             EEETTTTEE-EEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCE
T ss_pred             EEECCCCeE-EEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccccee
Confidence            999987763 22222      12345689999987666767665   6889999999887766655331  10  13445


Q ss_pred             cCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC--eEEEEeCC---CCc--------eE
Q 047260          642 PRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN--LVKVWSMA---SGE--------CI  708 (784)
Q Consensus       642 p~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd--~I~IwDl~---t~~--------~i  708 (784)
                      +++..+.+...++.+..|.              ..+..|+|+|+|+.|+.+...  .|..++..   .+.        .+
T Consensus       176 ~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  241 (343)
T 2qe8_A          176 IDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKI  241 (343)
T ss_dssp             ETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTC
T ss_pred             ECCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcce
Confidence            5665666666677665543              246789999999988877643  55555532   111        01


Q ss_pred             EEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceEEecc--cCCceEEEEEeCCCCEEEEEECCCc
Q 047260          709 QELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIAA--HENIISALAQSPVTGMVASASHDSS  779 (784)
Q Consensus       709 ~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~~~--h~~~V~slafspdg~~LaSgs~DG~  779 (784)
                      ..+ ++......+++++++..+++...++.|.+||..+++...+..  +...+.+++|.+++.++++.+..+.
T Consensus       242 ~~~-g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~  313 (343)
T 2qe8_A          242 ERY-SEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHH  313 (343)
T ss_dssp             EEE-EECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGG
T ss_pred             Eec-ccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCcccc
Confidence            111 223355678999999888887788899999995565443332  2456899999999988888765443

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.38  E-value=4.1e-11  Score=142.80  Aligned_cols=242  Identities=12%  Similarity=0.064  Sum_probs=166.2

Q ss_pred             cCCCceEEEEEcCCCCEEEEEe-----CCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCe-------
Q 047260          505 SRNSKVTCCHFSSDGKLLASSG-----HDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKS-------  572 (784)
Q Consensus       505 ~H~~~V~~l~fspdg~~Lasgs-----~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~-------  572 (784)
                      +|...|..++|||||++||.+.     ....|+|||+.+++.+... .+......++|+ |++.|+.++.+..       
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~  203 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSA  203 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence            3566788999999999988543     2357999999998865431 111113578999 9999999988743       


Q ss_pred             ------EEEEcCCCCcc---eeeeccC-CCCCeEEEEEcCCCCcEEEEEeCC---CeEEEEeCCCC--ee--EEeecCCe
Q 047260          573 ------VRLWDAANPNF---CSQAYTG-HSSPIMSLDFHPKKTDLFCFCDND---NEIQYWSINPF--LC--THITKGGT  635 (784)
Q Consensus       573 ------I~IWdl~~~~~---~~~~~~~-h~~~V~sl~~sp~~~~ll~sgs~d---g~I~iwDl~~~--~~--~~~~~~~v  635 (784)
                            |++|++.++..   ++..... |...+..+.|+|++..++++...+   ..|+++|+.+.  ..  +.......
T Consensus       204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~  283 (693)
T 3iuj_A          204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDAD  283 (693)
T ss_dssp             -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSC
T ss_pred             cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCce
Confidence                  99999987652   2222223 445678899999999887776543   58999998754  22  22222333


Q ss_pred             eEEEEecCCCEEEEEEC----CCcEEEEECCCCeE--EEEEeCCCCCEEEEEEcCCCCEEEEEe--CC--eEEEEeCCCC
Q 047260          636 AQVRFQPRIGQLLAAAS----DKVVSIFDIETDRQ--THSLQGHAELVNYICWDTNGDYLASVS--QN--LVKVWSMASG  705 (784)
Q Consensus       636 ~~v~fsp~~~~Ll~~s~----Dg~I~IwDl~t~~~--i~~l~~h~~~V~sl~~spdg~~Lasgs--dd--~I~IwDl~t~  705 (784)
                      ... ++++++.|+..+.    .+.|.++|+.++..  ...+..|...+.  .|++++++|+...  ++  .|++||+..+
T Consensus       284 ~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~  360 (693)
T 3iuj_A          284 VSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK  360 (693)
T ss_dssp             EEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC
T ss_pred             EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC
Confidence            333 6777787776665    26799999987654  345555666554  8889898877665  33  7999998854


Q ss_pred             ceEEEecc-CCCceEEEEEecCCCEEEEEECC----CeEEEEECCCCceEEe
Q 047260          706 ECIQELSS-NGNQFHSCVFHPSYSTLLVVGGI----SSLELWNMAENKSMTI  752 (784)
Q Consensus       706 ~~i~~l~~-~~~~I~sl~fspdg~~L~s~s~d----g~I~Iwdl~~~~~~~~  752 (784)
                       ....+.. ....+..+.+++++..|+....+    +.|+.||+.+++...+
T Consensus       361 -~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~l  411 (693)
T 3iuj_A          361 -RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAISLY  411 (693)
T ss_dssp             -EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEEEE
T ss_pred             -eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEEEE
Confidence             4445543 33556777788888877766554    7899999988765433

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.38  E-value=1e-11  Score=136.81  Aligned_cols=172  Identities=11%  Similarity=0.116  Sum_probs=138.0

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----------eeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEc
Q 047260          509 KVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQ-----------TESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWD  577 (784)
Q Consensus       509 ~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~-----------~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWd  577 (784)
                      .++.+++++...+|++|+.++ ++||++++..           ..... .+.. |+.|+|  ++++|+++ .++.|++||
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence            589999999999999999885 6669876433           11222 3566 999999  89999998 889999999


Q ss_pred             CCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCCeeEEEEecCCCEEEEEECCCcEE
Q 047260          578 AANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVS  657 (784)
Q Consensus       578 l~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~  657 (784)
                      +.+.. .......|...+.++.+.+..   ++++..||.|.+||+....... +...+++++|+|+|  ++++..||.|+
T Consensus       113 v~sl~-~~~~~~~~~~~v~~i~~~~p~---~av~~~dG~L~v~dl~~~~~~~-~~~~Vs~v~WSpkG--~~vg~~dg~i~  185 (388)
T 1xip_A          113 LEELS-EFRTVTSFEKPVFQLKNVNNT---LVILNSVNDLSALDLRTKSTKQ-LAQNVTSFDVTNSQ--LAVLLKDRSFQ  185 (388)
T ss_dssp             SSSTT-CEEEEEECSSCEEEEEECSSE---EEEEETTSEEEEEETTTCCEEE-EEESEEEEEECSSE--EEEEETTSCEE
T ss_pred             chhhh-ccCccceeecceeeEEecCCC---EEEEECCCCEEEEEccCCcccc-ccCCceEEEEcCCc--eEEEEcCCcEE
Confidence            98765 334455677788888877542   7778899999999999766554 56789999999998  78899999999


Q ss_pred             EEECCCCeE--EEEE------e---CCCCCEEEEEEcCCCCEEEEEe
Q 047260          658 IFDIETDRQ--THSL------Q---GHAELVNYICWDTNGDYLASVS  693 (784)
Q Consensus       658 IwDl~t~~~--i~~l------~---~h~~~V~sl~~spdg~~Lasgs  693 (784)
                      +|+......  ...+      .   +|...|.+|+|.+++.++++-.
T Consensus       186 ~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~  232 (388)
T 1xip_A          186 SFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG  232 (388)
T ss_dssp             EEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             EEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence            999988775  5566      2   3778999999999999998754

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.37  E-value=2.1e-10  Score=127.99  Aligned_cols=228  Identities=13%  Similarity=0.084  Sum_probs=159.0

Q ss_pred             CCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCC--eEEEEeCCCCee
Q 047260          550 SVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDN--EIQYWSINPFLC  627 (784)
Q Consensus       550 ~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg--~I~iwDl~~~~~  627 (784)
                      .....|+|+++++++++...++.|++||..++. +....... .... ++|++++..+++ ++.++  .|.+|+......
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~-~~~~~~~~-~~~~-ia~~~~g~~l~~-~d~~~~~~I~~~d~~~~~~  206 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNK-VTTVHPGF-KGGK-PAVTKDKQRVYS-IGWEGTHTVYVYMKASGWA  206 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTE-EEEEEETC-CBCB-CEECTTSSEEEE-EBSSTTCEEEEEEGGGTTC
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCE-EEEeeccC-CCCc-eeEecCCCcEEE-EecCCCceEEEEEcCCCce
Confidence            467899999999877777778999999998755 33333332 2333 999999885554 44443  899998875433


Q ss_pred             EEee-------cCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEE----EeCCCCCE--EEEEEcCCCCEEEEEe-
Q 047260          628 THIT-------KGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHS----LQGHAELV--NYICWDTNGDYLASVS-  693 (784)
Q Consensus       628 ~~~~-------~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~----l~~h~~~V--~sl~~spdg~~Lasgs-  693 (784)
                      ....       ......++++|+++.|+++..++.|+.||..++.....    ..++...-  ..++|+|++..|+.+. 
T Consensus       207 ~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~  286 (409)
T 3hrp_A          207 PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ  286 (409)
T ss_dssp             EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEET
T ss_pred             eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeC
Confidence            2222       24567899999777788877788999999987754332    22222222  3899999644444444 


Q ss_pred             C-CeEEEEeCCCCceEEEeccCC---------------CceEEEEEecCCCEEEEEE-CCCeEEEEECCCCceEEeccc-
Q 047260          694 Q-NLVKVWSMASGECIQELSSNG---------------NQFHSCVFHPSYSTLLVVG-GISSLELWNMAENKSMTIAAH-  755 (784)
Q Consensus       694 d-d~I~IwDl~t~~~i~~l~~~~---------------~~I~sl~fspdg~~L~s~s-~dg~I~Iwdl~~~~~~~~~~h-  755 (784)
                      . +.|+.|+....  +..+.++.               .....+++++++.++++-. .++.|+.|++.++....+.++ 
T Consensus       287 ~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~  364 (409)
T 3hrp_A          287 NLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQV  364 (409)
T ss_dssp             TTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECT
T ss_pred             CCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCC
Confidence            3 39999997644  33333321               3478999999999666655 678999999888877666555 


Q ss_pred             --------------CCceEEEEEeCCCCEEEEEECCCcEEEe
Q 047260          756 --------------ENIISALAQSPVTGMVASASHDSSVKLW  783 (784)
Q Consensus       756 --------------~~~V~slafspdg~~LaSgs~DG~V~IW  783 (784)
                                    -.....|++++++.++++-..+++|+.+
T Consensus       365 ~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i  406 (409)
T 3hrp_A          365 DVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKY  406 (409)
T ss_dssp             TCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEE
T ss_pred             CCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEE
Confidence                          2468999999998777777778888765

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.36  E-value=7.6e-10  Score=117.33  Aligned_cols=224  Identities=7%  Similarity=0.057  Sum_probs=152.3

Q ss_pred             CCCCCCeEEEEEccC-CCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCC
Q 047260          546 EDHKSVVTDVRFRPN-SSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINP  624 (784)
Q Consensus       546 ~~h~~~It~i~fspd-g~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~  624 (784)
                      ..+..-..+..|+++ +.++++...++.|..||..++...  .+ .....+.++++++++. ++++ . +..|.+||.++
T Consensus         9 ~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~--~~-~~~~~~~~i~~~~dG~-l~v~-~-~~~l~~~d~~~   82 (297)
T 3g4e_A            9 PENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ--RV-TMDAPVSSVALRQSGG-YVAT-I-GTKFCALNWKE   82 (297)
T ss_dssp             CCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE--EE-ECSSCEEEEEEBTTSS-EEEE-E-TTEEEEEETTT
T ss_pred             ccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE--EE-eCCCceEEEEECCCCC-EEEE-E-CCeEEEEECCC
Confidence            344455678999995 455666667899999999876532  22 2356799999999998 4444 3 67899999987


Q ss_pred             CeeEEeec-------CCeeEEEEecCCCEEEEEECC---------CcEEEEECCC-CeEEEEEeCCCCCEEEEEEcCCCC
Q 047260          625 FLCTHITK-------GGTAQVRFQPRIGQLLAAASD---------KVVSIFDIET-DRQTHSLQGHAELVNYICWDTNGD  687 (784)
Q Consensus       625 ~~~~~~~~-------~~v~~v~fsp~~~~Ll~~s~D---------g~I~IwDl~t-~~~i~~l~~h~~~V~sl~~spdg~  687 (784)
                      .+......       ..+..++++|+++.+++...+         ....||.+.. ++... +..+....+.++|+|+++
T Consensus        83 g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~~~~~~~pngi~~spdg~  161 (297)
T 3g4e_A           83 QSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK-YFDQVDISNGLDWSLDHK  161 (297)
T ss_dssp             TEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-EEEEESBEEEEEECTTSC
T ss_pred             CcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEE-EeeccccccceEEcCCCC
Confidence            65543322       235778999998855544321         2234444432 33322 333445568899999999


Q ss_pred             EEEEEe--CCeEEEEeC--CCCce-----EEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE-EecccCC
Q 047260          688 YLASVS--QNLVKVWSM--ASGEC-----IQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM-TIAAHEN  757 (784)
Q Consensus       688 ~Lasgs--dd~I~IwDl--~t~~~-----i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~  757 (784)
                      .|+.+.  .+.|.+||+  .++..     +..+.........++++++|.+.++....+.|.+||..+++.+ .+..+..
T Consensus       162 ~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~  241 (297)
T 3g4e_A          162 IFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVD  241 (297)
T ss_dssp             EEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSS
T ss_pred             EEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCC
Confidence            776655  348999987  45543     2233333456789999999987777777789999999988776 4555667


Q ss_pred             ceEEEEEe-CCCCEEEEEEC
Q 047260          758 IISALAQS-PVTGMVASASH  776 (784)
Q Consensus       758 ~V~slafs-pdg~~LaSgs~  776 (784)
                      .+++++|. |+++.|+.++.
T Consensus       242 ~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          242 KTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             BEEEEEEESGGGCEEEEEEB
T ss_pred             CceEEEEeCCCCCEEEEEcC
Confidence            89999998 88876655543

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.36  E-value=8.5e-11  Score=131.23  Aligned_cols=246  Identities=13%  Similarity=0.137  Sum_probs=173.9

Q ss_pred             EEeEeecCCCceEEEEEcCCCCEEEEEe----------CCCeEEEEECCCCceeeecCCC-------CCCeEEEEEccCC
Q 047260          499 EVGCIRSRNSKVTCCHFSSDGKLLASSG----------HDRKVVLWNMDTLQTESTPEDH-------KSVVTDVRFRPNS  561 (784)
Q Consensus       499 ~i~~l~~H~~~V~~l~fspdg~~Lasgs----------~Dg~I~IWd~~t~~~~~~l~~h-------~~~It~i~fspdg  561 (784)
                      .+..+..-..+  .++++|||++|+++.          .++.|.++|..+++.+..+.-.       ......+.|+||+
T Consensus       111 vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDG  188 (426)
T 3c75_H          111 ILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDN  188 (426)
T ss_dssp             EEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTS
T ss_pred             EEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCC
Confidence            34444433444  799999999888776          3678999999999988876421       2345678999999


Q ss_pred             CEEEEEeC--CCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEe----ec---
Q 047260          562 SQLATASV--DKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHI----TK---  632 (784)
Q Consensus       562 ~~Latgs~--Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~----~~---  632 (784)
                      ++|+++..  ++.|.+.|+.+.+. ...+.-. .   +....|++...+++.+.||.+.+.++...+....    +.   
T Consensus       189 k~lyV~n~~~~~~VsVID~~t~kv-v~~I~v~-g---~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~  263 (426)
T 3c75_H          189 KNLLFYQFSPAPAVGVVDLEGKTF-DRMLDVP-D---CYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTED  263 (426)
T ss_dssp             SEEEEEECSSSCEEEEEETTTTEE-EEEEECC-S---EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTT
T ss_pred             CEEEEEecCCCCeEEEEECCCCeE-EEEEEcC-C---ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCC
Confidence            99999875  57899999998774 3333321 1   1344566656777777888888888855444321    11   


Q ss_pred             CC-eeEEEEecCCCEEEEEECCCcEEEEECCCCeEE--EEEeC----------CCCCEEEEEEcCCCCEEEEEe------
Q 047260          633 GG-TAQVRFQPRIGQLLAAASDKVVSIFDIETDRQT--HSLQG----------HAELVNYICWDTNGDYLASVS------  693 (784)
Q Consensus       633 ~~-v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i--~~l~~----------h~~~V~sl~~spdg~~Lasgs------  693 (784)
                      .+ ...+.|.+++..++.....+.|.+.|+......  ..+..          .......+++++++..+++..      
T Consensus       264 ~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~g  343 (426)
T 3c75_H          264 ELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEW  343 (426)
T ss_dssp             SCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTT
T ss_pred             CceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccc
Confidence            11 123467889998888888899999999765422  11110          001112368999988776653      


Q ss_pred             -----CCeEEEEeCCCCceEEEeccCCCceEEEEEecCCC-EEEEEE-CCCeEEEEECCCCceEEe
Q 047260          694 -----QNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYS-TLLVVG-GISSLELWNMAENKSMTI  752 (784)
Q Consensus       694 -----dd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~-~L~s~s-~dg~I~Iwdl~~~~~~~~  752 (784)
                           .+.|.++|+.+.+.+.++... .....+.|+|+++ +++++. .++.|.++|+.+++.+..
T Consensus       344 thk~~s~~VsVID~~T~kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~t  408 (426)
T 3c75_H          344 KHKAASRFVVVLNAETGERINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRS  408 (426)
T ss_dssp             CTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred             cccCCCCEEEEEECCCCeEEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEE
Confidence                 237999999999999998654 3578999999999 888888 489999999999998743

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.34  E-value=1.3e-09  Score=117.39  Aligned_cols=219  Identities=15%  Similarity=0.051  Sum_probs=152.9

Q ss_pred             eEEEEEcCCCC-EEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeec
Q 047260          510 VTCCHFSSDGK-LLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAY  588 (784)
Q Consensus       510 V~~l~fspdg~-~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~  588 (784)
                      ..+.+|+|++. ++++...++.|.+||..+++... + .....|.+++|+++++++++. .+ .|.+||..+++......
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~-~~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~  126 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTV-H-ALPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAE  126 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-E-ECSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEEC
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-E-ECCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEee
Confidence            56788999754 56666678899999998775432 2 235679999999999877654 44 59999988766321111


Q ss_pred             c--C-CCCCeEEEEEcCCCCcEEEEEeC------CCeEEEEeCCCCeeEEee--cCCeeEEEEecCCCEEEEEEC-CCcE
Q 047260          589 T--G-HSSPIMSLDFHPKKTDLFCFCDN------DNEIQYWSINPFLCTHIT--KGGTAQVRFQPRIGQLLAAAS-DKVV  656 (784)
Q Consensus       589 ~--~-h~~~V~sl~~sp~~~~ll~sgs~------dg~I~iwDl~~~~~~~~~--~~~v~~v~fsp~~~~Ll~~s~-Dg~I  656 (784)
                      .  . ....+.+++++|++. ++++...      .+.|..++  ..+.....  ......++|+|+++.++++.. ++.|
T Consensus       127 ~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I  203 (326)
T 2ghs_A          127 LESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRL  203 (326)
T ss_dssp             SSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEE
T ss_pred             CCCCCCCCCCCCEEECCCCC-EEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEE
Confidence            1  1 123588999999987 4444332      25666666  34333222  245678999999998877665 6899


Q ss_pred             EEEECC--CC-e-----EEEEEeCCCCCEEEEEEcCCCCEEEEEeC-CeEEEEeCCCCceEEEeccCCCceEEEEEe-cC
Q 047260          657 SIFDIE--TD-R-----QTHSLQGHAELVNYICWDTNGDYLASVSQ-NLVKVWSMASGECIQELSSNGNQFHSCVFH-PS  726 (784)
Q Consensus       657 ~IwDl~--t~-~-----~i~~l~~h~~~V~sl~~spdg~~Lasgsd-d~I~IwDl~t~~~i~~l~~~~~~I~sl~fs-pd  726 (784)
                      .+||+.  ++ .     .+..+.........++++++|.++++... +.|.+||. +++.+..+..+...+.+++|. ++
T Consensus       204 ~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d  282 (326)
T 2ghs_A          204 MRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPD  282 (326)
T ss_dssp             EEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTT
T ss_pred             EEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCC
Confidence            999986  55 2     22233334456788999999998777654 58999998 677778887777789999998 88


Q ss_pred             CCEEEEEECC
Q 047260          727 YSTLLVVGGI  736 (784)
Q Consensus       727 g~~L~s~s~d  736 (784)
                      +..|++++..
T Consensus       283 ~~~L~vt~~~  292 (326)
T 2ghs_A          283 ASRLLVTSAR  292 (326)
T ss_dssp             SCEEEEEEBC
T ss_pred             CCEEEEEecC
Confidence            8877766654

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.30  E-value=6.7e-10  Score=118.14  Aligned_cols=235  Identities=13%  Similarity=0.138  Sum_probs=161.3

Q ss_pred             eEeecCCCceEEEEEcCCCC-EEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCC
Q 047260          501 GCIRSRNSKVTCCHFSSDGK-LLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAA  579 (784)
Q Consensus       501 ~~l~~H~~~V~~l~fspdg~-~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~  579 (784)
                      ..+..+........|+++|+ +++++..++.|..|+.. ++ ...+..+...+..++++++|+++++...++.|.+|+.+
T Consensus        38 ~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~  115 (305)
T 3dr2_A           38 LTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD  115 (305)
T ss_dssp             EEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred             EEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC
Confidence            34445566688899999998 56677778999999984 44 34455566789999999999976666566889999986


Q ss_pred             CCcceeee--ccC-CCCCeEEEEEcCCCCcEEEE----EeC-------------CCeEEEEeCCCCeeEEe-ecCCeeEE
Q 047260          580 NPNFCSQA--YTG-HSSPIMSLDFHPKKTDLFCF----CDN-------------DNEIQYWSINPFLCTHI-TKGGTAQV  638 (784)
Q Consensus       580 ~~~~~~~~--~~~-h~~~V~sl~~sp~~~~ll~s----gs~-------------dg~I~iwDl~~~~~~~~-~~~~v~~v  638 (784)
                       +......  ..+ ....+.++++.+++. ++++    +..             .+.|+.||..+.+.... .......+
T Consensus       116 -g~~~~~~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~p~gl  193 (305)
T 3dr2_A          116 -GQAHLLVGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMADLDHPNGL  193 (305)
T ss_dssp             -SCEEEEECEETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEEEESSEEEE
T ss_pred             -CCEEEEEeccCCCccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEecCCCCcce
Confidence             4421111  111 123467899999987 5554    221             25688888754433222 23455779


Q ss_pred             EEecCCCEEEEEECC------CcEEEEECCCCeE--EEEE-eCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEE
Q 047260          639 RFQPRIGQLLAAASD------KVVSIFDIETDRQ--THSL-QGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQ  709 (784)
Q Consensus       639 ~fsp~~~~Ll~~s~D------g~I~IwDl~t~~~--i~~l-~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~  709 (784)
                      +|+|+++.|+++...      +.|.+||+..+..  ...+ .........++++++|++.++. .+.|.+||. +++.+.
T Consensus       194 ~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~-~~gv~~~~~-~g~~~~  271 (305)
T 3dr2_A          194 AFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSS-GTGVCVFDS-DGQLLG  271 (305)
T ss_dssp             EECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECC-SSEEEEECT-TSCEEE
T ss_pred             EEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEec-CCcEEEECC-CCCEEE
Confidence            999999988888775      7899999876541  1112 1123345678999999965554 557999998 577777


Q ss_pred             EeccCCCceEEEEEecCCCEEEEEECCCeEEEEE
Q 047260          710 ELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWN  743 (784)
Q Consensus       710 ~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwd  743 (784)
                      .+..+. .+.+++|.++++.|++++.++ |..++
T Consensus       272 ~~~~~~-~~~~~~f~~d~~~L~it~~~~-l~~~~  303 (305)
T 3dr2_A          272 HIPTPG-TASNCTFDQAQQRLFITGGPC-LWMLP  303 (305)
T ss_dssp             EEECSS-CCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred             EEECCC-ceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence            776655 588999999999898888764 44333

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.29  E-value=3.2e-09  Score=114.32  Aligned_cols=216  Identities=11%  Similarity=0.064  Sum_probs=146.8

Q ss_pred             CeEEEEEccCC-CEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEE
Q 047260          551 VVTDVRFRPNS-SQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTH  629 (784)
Q Consensus       551 ~It~i~fspdg-~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~  629 (784)
                      ...++.|+|++ .++++...++.|.+||..++...  .+. ....+.++.|.+++. +++++  +..|.+||..+.+...
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~--~~~-~~~~v~~i~~~~dg~-l~v~~--~~gl~~~d~~~g~~~~  123 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT--VHA-LPFMGSALAKISDSK-QLIAS--DDGLFLRDTATGVLTL  123 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE--EEE-CSSCEEEEEEEETTE-EEEEE--TTEEEEEETTTCCEEE
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE--EEE-CCCcceEEEEeCCCe-EEEEE--CCCEEEEECCCCcEEE
Confidence            35678999974 45566667889999999876522  222 346799999999986 44433  3459999988766543


Q ss_pred             eec-------CCeeEEEEecCCCEEEEEEC------CCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--C
Q 047260          630 ITK-------GGTAQVRFQPRIGQLLAAAS------DKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVS--Q  694 (784)
Q Consensus       630 ~~~-------~~v~~v~fsp~~~~Ll~~s~------Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgs--d  694 (784)
                      ...       ..+..++++|+++.+++...      .+.|..+|  +++... +..+......++|+|+++.|+.+.  +
T Consensus       124 ~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~~~~  200 (326)
T 2ghs_A          124 HAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIPNSICFSPDGTTGYFVDTKV  200 (326)
T ss_dssp             EECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSEEEEEECTTSCEEEEEETTT
T ss_pred             EeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcccCCeEEcCCCCEEEEEECCC
Confidence            322       23678899999886554432      24566666  454433 322334578899999999776665  3


Q ss_pred             CeEEEEeCC--CC-c-----eEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE-EecccCCceEEEEEe
Q 047260          695 NLVKVWSMA--SG-E-----CIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQS  765 (784)
Q Consensus       695 d~I~IwDl~--t~-~-----~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafs  765 (784)
                      +.|.+||+.  ++ .     .+..+......+..+++.+++.++++...++.|.+||.. ++.+ .+..+...+++++|+
T Consensus       201 ~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~-g~~~~~i~~~~~~~~~~af~  279 (326)
T 2ghs_A          201 NRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GNHIARYEVPGKQTTCPAFI  279 (326)
T ss_dssp             CEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-CCEEEEEECSCSBEEEEEEE
T ss_pred             CEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC-CCEEEEEECCCCCcEEEEEe
Confidence            489999986  55 3     223333334557889999999877766677899999984 4444 555566679999998


Q ss_pred             -CCCCEEEEEEC
Q 047260          766 -PVTGMVASASH  776 (784)
Q Consensus       766 -pdg~~LaSgs~  776 (784)
                       ++++.|++++.
T Consensus       280 g~d~~~L~vt~~  291 (326)
T 2ghs_A          280 GPDASRLLVTSA  291 (326)
T ss_dssp             STTSCEEEEEEB
T ss_pred             cCCCCEEEEEec
Confidence             88876655543

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.28  E-value=2.5e-09  Score=116.88  Aligned_cols=253  Identities=11%  Similarity=0.040  Sum_probs=164.5

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCe--
Q 047260          518 DGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPI--  595 (784)
Q Consensus       518 dg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V--  595 (784)
                      ++..|++++.++.|..+|..+++.+................  +..+++++.++.|..+|..+++..-. +.......  
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~-~~~~~~~~~~  178 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWT-VNLDMPSLSL  178 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEE-EECCC-----
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEE-EeCCCCceee
Confidence            35577888899999999999999887765443222222222  45788888999999999998774332 22111110  


Q ss_pred             ---EEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCCee-------E---EEEe--cCCCEEEEEECCCcEEEEE
Q 047260          596 ---MSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTA-------Q---VRFQ--PRIGQLLAAASDKVVSIFD  660 (784)
Q Consensus       596 ---~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v~-------~---v~fs--p~~~~Ll~~s~Dg~I~IwD  660 (784)
                         ...... + . .++.+..++.|..+|..+++.+........       .   +...  ..++.+++++.++.|..+|
T Consensus       179 ~~~~~~~~~-~-~-~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d  255 (376)
T 3q7m_A          179 RGESAPTTA-F-G-AAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALD  255 (376)
T ss_dssp             CCCCCCEEE-T-T-EEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEE
T ss_pred             cCCCCcEEE-C-C-EEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEE
Confidence               112222 2 2 566677899999999988877655442110       0   0011  1357788888899999999


Q ss_pred             CCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEeCCCCceEEEeccC-CCceEEEEEecCCCEEEEEECCCe
Q 047260          661 IETDRQTHSLQGHAELVNYICWDTNGDYLASVS-QNLVKVWSMASGECIQELSSN-GNQFHSCVFHPSYSTLLVVGGISS  738 (784)
Q Consensus       661 l~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgs-dd~I~IwDl~t~~~i~~l~~~-~~~I~sl~fspdg~~L~s~s~dg~  738 (784)
                      .++++.+.....  .....+...  +..|+.++ ++.|..+|..+++.+...... ...+....+.  +..|++++.+|.
T Consensus       256 ~~tG~~~w~~~~--~~~~~~~~~--~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~--~~~l~v~~~~g~  329 (376)
T 3q7m_A          256 LRSGQIMWKREL--GSVNDFIVD--GNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY--NGNLVVGDSEGY  329 (376)
T ss_dssp             TTTCCEEEEECC--CCEEEEEEE--TTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE--TTEEEEECTTSE
T ss_pred             CCCCcEEeeccC--CCCCCceEE--CCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE--CCEEEEEeCCCe
Confidence            999988876642  334444443  44555555 559999999999988777622 2223333333  457999999999


Q ss_pred             EEEEECCCCceEE-ecccCCceE-EEEEeCCCCEEEEEECCCcEEEeC
Q 047260          739 LELWNMAENKSMT-IAAHENIIS-ALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       739 I~Iwdl~~~~~~~-~~~h~~~V~-slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      |+++|..+++.+. .......+. .....  +..|+.++.||.|..||
T Consensus       330 l~~~d~~tG~~~~~~~~~~~~~~~~~~~~--~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          330 LHWINVEDGRFVAQQKVDSSGFQTEPVAA--DGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             EEEEETTTCCEEEEEECCTTCBCSCCEEE--TTEEEEEBTTSCEEEEE
T ss_pred             EEEEECCCCcEEEEEecCCCcceeCCEEE--CCEEEEEeCCCEEEEEe
Confidence            9999999998873 322223332 22222  56788899999999885

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.27  E-value=5.7e-11  Score=130.39  Aligned_cols=253  Identities=11%  Similarity=0.067  Sum_probs=173.6

Q ss_pred             eEEeEeecCCCceEEEEEcCCCCEEEEEe----------CCCeEEEEECCCCceeeecCCC-------CCCeEEEEEccC
Q 047260          498 CEVGCIRSRNSKVTCCHFSSDGKLLASSG----------HDRKVVLWNMDTLQTESTPEDH-------KSVVTDVRFRPN  560 (784)
Q Consensus       498 ~~i~~l~~H~~~V~~l~fspdg~~Lasgs----------~Dg~I~IWd~~t~~~~~~l~~h-------~~~It~i~fspd  560 (784)
                      +.+.++..-..+  .+.|+||+++|+++.          .++.|.+||+.+++.+.++..+       ......+.|+||
T Consensus        57 ~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpD  134 (368)
T 1mda_H           57 VTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCAS  134 (368)
T ss_dssp             EEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTT
T ss_pred             eEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCC
Confidence            344555544455  799999999988886          3688999999999999988543       124568999999


Q ss_pred             CCEEEEEeC--CCeEEE--EcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCC-----CeeEEe-
Q 047260          561 SSQLATASV--DKSVRL--WDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINP-----FLCTHI-  630 (784)
Q Consensus       561 g~~Latgs~--Dg~I~I--Wdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~-----~~~~~~-  630 (784)
                      |++|+++..  +..|.+  +|+.+    ...+.- .+   |+.+.|++...+++.+.|+.+.+.|+.+     .+.... 
T Consensus       135 Gk~lyVan~~~~~~v~V~~iD~~t----v~~i~v-~~---~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~  206 (368)
T 1mda_H          135 SACLLFFLFGSSAAAGLSVPGASD----DQLTKS-AS---CFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQC  206 (368)
T ss_dssp             SSCEEEEECSSSCEEEEEETTTEE----EEEEEC-SS---CCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCS
T ss_pred             CCEEEEEccCCCCeEEEEEEchhh----ceEEEC-CC---ceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEe
Confidence            999999875  467888  99876    122211 11   1224566666777777888888888876     332211 


Q ss_pred             ---e---cCCeeEEEEecCCCEEEEEECCCcEEEEECCCC--eEEEEEeCC----------CCCEEEEEEcCCCCEEEEE
Q 047260          631 ---T---KGGTAQVRFQPRIGQLLAAASDKVVSIFDIETD--RQTHSLQGH----------AELVNYICWDTNGDYLASV  692 (784)
Q Consensus       631 ---~---~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~--~~i~~l~~h----------~~~V~sl~~spdg~~Lasg  692 (784)
                         +   ..+.   . .++++.++..+. +.|.+.|+...  +.+..+...          ......++++|+++.++++
T Consensus       207 t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~  281 (368)
T 1mda_H          207 TGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMIL  281 (368)
T ss_dssp             CTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEE
T ss_pred             eeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEE
Confidence               1   1222   3 677777777777 99999999754  233322211          0111226899999887764


Q ss_pred             e--C--------CeEEEEeCCCCceEEEeccCCCceEEEEEecCCCE-EEEEE-CCCeEEEEECCCCceEEecccCCceE
Q 047260          693 S--Q--------NLVKVWSMASGECIQELSSNGNQFHSCVFHPSYST-LLVVG-GISSLELWNMAENKSMTIAAHENIIS  760 (784)
Q Consensus       693 s--d--------d~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~-L~s~s-~dg~I~Iwdl~~~~~~~~~~h~~~V~  760 (784)
                      .  .        +.+.++|+.+.+.+.++.... ....++|+|++++ +++.. .++.|.++|+.+++.+....-.....
T Consensus       282 ~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~P~  360 (368)
T 1mda_H          282 TVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPE  360 (368)
T ss_dssp             EEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCC
T ss_pred             eccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCCCC
Confidence            2  2        366799999999998886543 5789999999985 45555 48999999999999885554444556


Q ss_pred             EEEEeC
Q 047260          761 ALAQSP  766 (784)
Q Consensus       761 slafsp  766 (784)
                      .+++.+
T Consensus       361 ~i~~~~  366 (368)
T 1mda_H          361 SLSVQN  366 (368)
T ss_dssp             EEECCC
T ss_pred             EEEeec
Confidence            666554

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.26  E-value=1.1e-09  Score=116.35  Aligned_cols=230  Identities=7%  Similarity=-0.016  Sum_probs=155.5

Q ss_pred             eecCCCCCCeEEEEEccCCC-EEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEe
Q 047260          543 STPEDHKSVVTDVRFRPNSS-QLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWS  621 (784)
Q Consensus       543 ~~l~~h~~~It~i~fspdg~-~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwD  621 (784)
                      ..+...........|+++++ ++++...++.|..|+.. +.  ...+..+...+..+++++++. ++++...++.|.+|+
T Consensus        38 ~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~--~~~~~~~~~~~~gl~~d~dG~-l~v~~~~~~~v~~~~  113 (305)
T 3dr2_A           38 LTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT--VDVLLDATAFTNGNAVDAQQR-LVHCEHGRRAITRSD  113 (305)
T ss_dssp             EEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC--EEEEEESCSCEEEEEECTTSC-EEEEETTTTEEEEEC
T ss_pred             EEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC--EEEEeCCCCccceeeECCCCC-EEEEECCCCEEEEEC
Confidence            33444556678899999998 56666778999999984 33  233444567789999999987 665555568899999


Q ss_pred             CCCCeeEEee---c----CCeeEEEEecCCCEEEE----EEC-------------CCcEEEEECCCCeEEEEEeCCCCCE
Q 047260          622 INPFLCTHIT---K----GGTAQVRFQPRIGQLLA----AAS-------------DKVVSIFDIETDRQTHSLQGHAELV  677 (784)
Q Consensus       622 l~~~~~~~~~---~----~~v~~v~fsp~~~~Ll~----~s~-------------Dg~I~IwDl~t~~~i~~l~~h~~~V  677 (784)
                      .+ +......   .    ..+..+++.+++..+++    +..             .+.|..||..+++.....  .....
T Consensus       114 ~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p  190 (305)
T 3dr2_A          114 AD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHP  190 (305)
T ss_dssp             TT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSE
T ss_pred             CC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCC
Confidence            86 3332221   1    23567999999887665    221             256888887666544333  34466


Q ss_pred             EEEEEcCCCCEEEEEeC-------CeEEEEeCCCCce--EEEe-ccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCC
Q 047260          678 NYICWDTNGDYLASVSQ-------NLVKVWSMASGEC--IQEL-SSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAEN  747 (784)
Q Consensus       678 ~sl~~spdg~~Lasgsd-------d~I~IwDl~t~~~--i~~l-~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~  747 (784)
                      ..++|+|+++.|+++..       +.|.+||+..+..  ...+ .........++++++|+ |++++.+ .|.+|+....
T Consensus       191 ~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~~~-gv~~~~~~g~  268 (305)
T 3dr2_A          191 NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW-LWSSSGT-GVCVFDSDGQ  268 (305)
T ss_dssp             EEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC-EEECCSS-EEEEECTTSC
T ss_pred             cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC-EEEecCC-cEEEECCCCC
Confidence            88999999997766653       4899999876541  1111 11233456789999998 5555544 5999998544


Q ss_pred             ceEEecccCCceEEEEEeCCCCEEEEEECCCcEEE
Q 047260          748 KSMTIAAHENIISALAQSPVTGMVASASHDSSVKL  782 (784)
Q Consensus       748 ~~~~~~~h~~~V~slafspdg~~LaSgs~DG~V~I  782 (784)
                      ....+..+. .+.+++|+++++.|+.++.++..++
T Consensus       269 ~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~~  302 (305)
T 3dr2_A          269 LLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWML  302 (305)
T ss_dssp             EEEEEECSS-CCCEEEECTTSCEEEEEETTEEEEE
T ss_pred             EEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEEE
Confidence            333444343 5899999999998888888765554

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.25  E-value=5.1e-10  Score=119.21  Aligned_cols=256  Identities=11%  Similarity=-0.010  Sum_probs=169.8

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeec
Q 047260          509 KVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAY  588 (784)
Q Consensus       509 ~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~  588 (784)
                      .+.++.+.+++. |.+++.+  |..||. +++.+..+......+....+.  +..|+.++.++.|..+|.. ++ .....
T Consensus        61 ~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~-~~~~~  132 (330)
T 3hxj_A           61 IECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GT-EKWRF  132 (330)
T ss_dssp             EEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SC-EEEEE
T ss_pred             cccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CC-EEEEE
Confidence            456777777775 4444444  888886 566655554433333334443  5568888889999999988 55 33333


Q ss_pred             cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEEEECCCcEEEEECCCCe
Q 047260          589 TGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLAAASDKVVSIFDIETDR  665 (784)
Q Consensus       589 ~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~  665 (784)
                      ..+...+.++...+++.  +..++.++.|..+|.. ++......   ..+.++.+.+++. +++++  +.|..|| .+++
T Consensus       133 ~~~~~~~~~~~~~~~g~--l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~-l~v~t--~~l~~~d-~~g~  205 (330)
T 3hxj_A          133 KTKKAIYATPIVSEDGT--IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGT-IYFGS--DKVYAIN-PDGT  205 (330)
T ss_dssp             ECSSCCCSCCEECTTSC--EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCC-EEEES--SSEEEEC-TTSC
T ss_pred             cCCCceeeeeEEcCCCE--EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCE-EEEEe--CEEEEEC-CCCc
Confidence            33444566667766665  4557778999999998 55543332   3445566666655 55555  8899999 7777


Q ss_pred             EEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECC
Q 047260          666 QTHSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMA  745 (784)
Q Consensus       666 ~i~~l~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~  745 (784)
                      .+..+......+.++..+++|.++++..++.|..+| .+++.+..+......+..+.+.+++ .|++++.+|.|..+|. 
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~-~~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-  282 (330)
T 3hxj_A          206 EKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAIN-PDGTEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINP-  282 (330)
T ss_dssp             EEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEEC-TTSCEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECT-
T ss_pred             EEEEEccCCcceeceEECCCCeEEEEcCCCeEEEEC-CCCCEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEECC-
Confidence            777776666678888999988877766667888887 4666666666554444556665555 5888888889999996 


Q ss_pred             CCceE-EecccCCceEEEEEeCCCCEEEEEECCCcEEEe
Q 047260          746 ENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLW  783 (784)
Q Consensus       746 ~~~~~-~~~~h~~~V~slafspdg~~LaSgs~DG~V~IW  783 (784)
                      +++.. ........+.++...+++. |..++.+|.+++.
T Consensus       283 ~g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~  320 (330)
T 3hxj_A          283 DGTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYAL  320 (330)
T ss_dssp             TSCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEE
T ss_pred             CCcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEE
Confidence            55544 4434455677787777775 4558889988764

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.21  E-value=1.8e-13  Score=150.68  Aligned_cols=223  Identities=10%  Similarity=0.004  Sum_probs=122.3

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCC-CeE
Q 047260          518 DGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSS-PIM  596 (784)
Q Consensus       518 dg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~-~V~  596 (784)
                      ++..|++++.||.|+.||..+++.+..+..  +.+.+..+..++..+++++.|+.|+.||.++++.. ..+..+.. .+.
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~-w~~~~~~~~~~~   84 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGL-TKLPFTIPELVQ   84 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCS-EECSCCHHHHHT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCcee-eeeeccCccccc
Confidence            577899999999999999999999988865  55666666667878888889999999999887632 22221110 010


Q ss_pred             -EEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCC
Q 047260          597 -SLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAE  675 (784)
Q Consensus       597 -sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~  675 (784)
                       +..+. .+. .+++++.++.|+.||.++++.+..+.... ...++|+++.+++++.|+.|+.||.++++.+..+..+. 
T Consensus        85 ~sp~~~-~~~-~v~~g~~dg~v~a~D~~tG~~~w~~~~~~-~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~-  160 (369)
T 2hz6_A           85 ASPCRS-SDG-ILYMGKKQDIWYVIDLLTGEKQQTLSSAF-ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD-  160 (369)
T ss_dssp             TCSCC-------CCCCEEEEEEEEECCC-----------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE-
T ss_pred             cCceEe-cCC-EEEEEeCCCEEEEEECCCCcEEEEecCCC-cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc-
Confidence             00111 222 56667779999999999888776654332 24566788899999999999999999998766554211 


Q ss_pred             CEEEEEEcCC----CCEEEEEeCCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEE--EECCCeEEEEECCCCc
Q 047260          676 LVNYICWDTN----GDYLASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLV--VGGISSLELWNMAENK  748 (784)
Q Consensus       676 ~V~sl~~spd----g~~Lasgsdd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s--~s~dg~I~Iwdl~~~~  748 (784)
                       ....+++.+    +.++++..++.|+.||..+|+.+.++......+....+++++...+.  ...++.++++|..+++
T Consensus       161 -~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~~~v~~~~~~~~~l~~ld~~tG~  238 (369)
T 2hz6_A          161 -YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGLRKVMHINVAVETLRYLTFMSGE  238 (369)
T ss_dssp             -ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSCEEECCEEEEHHHHHHHHHHHHH
T ss_pred             -ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEEecCCceEeccceeecccceeeeehhcCC
Confidence             122233332    45555444669999999999998887644332333344455532110  0113345556655544

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.18  E-value=2e-09  Score=128.11  Aligned_cols=264  Identities=11%  Similarity=0.076  Sum_probs=174.4

Q ss_pred             CCEEEEEeCCCeEEEEECCCCceeeecCCCCCC----------e-EEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeee
Q 047260          519 GKLLASSGHDRKVVLWNMDTLQTESTPEDHKSV----------V-TDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQA  587 (784)
Q Consensus       519 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~----------I-t~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~  587 (784)
                      +..|++++.++.|+.+|..+++.+..+..+...          + ..+.+  .+..|++++.|+.|..+|.++++.+-..
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~  147 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV  147 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence            557777888999999999999998887543221          1 11222  3567888999999999999998854333


Q ss_pred             ccC-CCCCeEEEEEcC--CCCcEEEEEe-----CCCeEEEEeCCCCeeEEeecC----C---------------------
Q 047260          588 YTG-HSSPIMSLDFHP--KKTDLFCFCD-----NDNEIQYWSINPFLCTHITKG----G---------------------  634 (784)
Q Consensus       588 ~~~-h~~~V~sl~~sp--~~~~ll~sgs-----~dg~I~iwDl~~~~~~~~~~~----~---------------------  634 (784)
                      ... +......+...|  .+..+++.++     .++.|+.||.++++.+..+..    +                     
T Consensus       148 ~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w  227 (689)
T 1yiq_A          148 DTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAY  227 (689)
T ss_dssp             ECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTH
T ss_pred             cCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCcee
Confidence            222 111111111111  1232433322     368999999999887755431    0                     


Q ss_pred             ---------eeEEEEecCCCEEEEEECCCc-------------------EEEEECCCCeEEEEEeC--CC-------CCE
Q 047260          635 ---------TAQVRFQPRIGQLLAAASDKV-------------------VSIFDIETDRQTHSLQG--HA-------ELV  677 (784)
Q Consensus       635 ---------v~~v~fsp~~~~Ll~~s~Dg~-------------------I~IwDl~t~~~i~~l~~--h~-------~~V  677 (784)
                               ...++++|+.+.++++..++.                   |..+|.++++.+..+..  |.       ..+
T Consensus       228 ~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~  307 (689)
T 1yiq_A          228 VEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHM  307 (689)
T ss_dssp             HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCE
T ss_pred             eecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCc
Confidence                     024778999899999887753                   99999999999988764  22       122


Q ss_pred             EEEEEcCCCC---EEEEEeC-CeEEEEeCCCCceEEEeccCCC-------------------------------------
Q 047260          678 NYICWDTNGD---YLASVSQ-NLVKVWSMASGECIQELSSNGN-------------------------------------  716 (784)
Q Consensus       678 ~sl~~spdg~---~Lasgsd-d~I~IwDl~t~~~i~~l~~~~~-------------------------------------  716 (784)
                      .......+|+   +|+.++. +.|+++|.++|+.+........                                     
T Consensus       308 ~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~G  387 (689)
T 1yiq_A          308 ILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWG  387 (689)
T ss_dssp             EEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTC
T ss_pred             EEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCccc
Confidence            2222233564   6666664 5999999999998754332110                                     


Q ss_pred             --ceEEEEEecCCCEEEEEEC---------------------------------------------CCeEEEEECCCCce
Q 047260          717 --QFHSCVFHPSYSTLLVVGG---------------------------------------------ISSLELWNMAENKS  749 (784)
Q Consensus       717 --~I~sl~fspdg~~L~s~s~---------------------------------------------dg~I~Iwdl~~~~~  749 (784)
                        ....++|+|+...+++...                                             +|.|+.||+.+++.
T Consensus       388 g~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~  467 (689)
T 1yiq_A          388 AHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQA  467 (689)
T ss_dssp             SSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEE
T ss_pred             ccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCe
Confidence              0123688898887777632                                             37799999999998


Q ss_pred             EEecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          750 MTIAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       750 ~~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      +-...+...+....+...+.+|++++.||.|++||
T Consensus       468 ~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D  502 (689)
T 1yiq_A          468 AWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYA  502 (689)
T ss_dssp             EEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred             EeEccCCCCccCccceECCCEEEEECCCCcEEEEE
Confidence            84444444444445666788999999999999986

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.17  E-value=4.6e-10  Score=123.12  Aligned_cols=244  Identities=8%  Similarity=-0.019  Sum_probs=162.4

Q ss_pred             eEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEe----------CCCeEEEEcCCCCcceeeeccCC-------C
Q 047260          530 KVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATAS----------VDKSVRLWDAANPNFCSQAYTGH-------S  592 (784)
Q Consensus       530 ~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs----------~Dg~I~IWdl~~~~~~~~~~~~h-------~  592 (784)
                      +|.++|..+++.+.++.....+  .+.++||+++++++.          .++.|.+||+.+.+.. ..+.-.       .
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv-~~I~v~~~~~~~~g  123 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPI-ADIELPDAPRFSVG  123 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEE-EEEEETTSCSCCBS
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEE-EEEECCCccccccC
Confidence            8999999999999998766566  799999999999886          3688999999998743 333211       1


Q ss_pred             CCeEEEEEcCCCCcEEEEEeC-CCeEEE--EeCCCCeeEEeecCCeeEEEEecCCC-EEEEEECCCcEEEEECCC-----
Q 047260          593 SPIMSLDFHPKKTDLFCFCDN-DNEIQY--WSINPFLCTHITKGGTAQVRFQPRIG-QLLAAASDKVVSIFDIET-----  663 (784)
Q Consensus       593 ~~V~sl~~sp~~~~ll~sgs~-dg~I~i--wDl~~~~~~~~~~~~v~~v~fsp~~~-~Ll~~s~Dg~I~IwDl~t-----  663 (784)
                      .....+.++|++++++++... +..|.+  +|+.+   +.....+- ++.+.|++. .+++.+.|+.+.+.|+++     
T Consensus       124 ~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~-~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~  199 (368)
T 1mda_H          124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS-CFHIHPGAAATHYLGSCPASLAASDLAAAPAAA  199 (368)
T ss_dssp             CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSS-CCCCEEEETTEEECCCCTTSCEEEECCSSCCCC
T ss_pred             CCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCC-ceEEccCCCeEEEEEcCCCCEEEEECccccccC
Confidence            245689999999988777644 567888  89877   22222110 122345554 344556689999999987     


Q ss_pred             CeEEE----EEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCc--eEEEeccCC----------CceEEEEEecCC
Q 047260          664 DRQTH----SLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGE--CIQELSSNG----------NQFHSCVFHPSY  727 (784)
Q Consensus       664 ~~~i~----~l~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~--~i~~l~~~~----------~~I~sl~fspdg  727 (784)
                      ++...    .+.....+.   .+..++.++++.. +.|.+.|+.+..  .+..+....          .....++++|++
T Consensus       200 ~~v~~~~t~~i~vg~~P~---~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg  275 (368)
T 1mda_H          200 GIVGAQCTGAQNCSSQAA---QANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNT  275 (368)
T ss_dssp             EECCCCSCTTSCBCSCCE---EETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTT
T ss_pred             CeEEEEeeeeeeCCCCcc---ccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCC
Confidence            43321    111122333   3333444455555 889999986542  333222110          112227899999


Q ss_pred             CEEEEEEC---------CCeEEEEECCCCceEEecccCCceEEEEEeCCCC-EEEEEE-CCCcEEEeC
Q 047260          728 STLLVVGG---------ISSLELWNMAENKSMTIAAHENIISALAQSPVTG-MVASAS-HDSSVKLWK  784 (784)
Q Consensus       728 ~~L~s~s~---------dg~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~-~LaSgs-~DG~V~IWd  784 (784)
                      +.++++..         ++.+.++|+.+.+.+....-.....+|+|++|++ ++++.. .++.|.|+|
T Consensus       276 ~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID  343 (368)
T 1mda_H          276 DGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYD  343 (368)
T ss_dssp             TEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred             CEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEE
Confidence            98887643         2456799999998874443334689999999997 566666 599999986

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.17  E-value=4.3e-10  Score=123.94  Aligned_cols=169  Identities=14%  Similarity=0.079  Sum_probs=130.5

Q ss_pred             CeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe-------------eEEeecCCeeEEEEecCCCEEEEEECCCcEEEEE
Q 047260          594 PIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFL-------------CTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFD  660 (784)
Q Consensus       594 ~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~-------------~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwD  660 (784)
                      .+..+++++... ++++|+.+ .+++|++....             ....+.. +..++|  ++..|+++ .++.|++||
T Consensus        39 ~~nlLais~~~g-ll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           39 SLQNLDISNSKS-LFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             CCBCEEEETTTT-EEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred             cccEEEEcCCCC-EEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence            688999999877 66667766 55669865322             2334456 999999  88888888 889999999


Q ss_pred             CCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEE
Q 047260          661 IETDRQTHSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLE  740 (784)
Q Consensus       661 l~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~  740 (784)
                      +++.........|...+.++.+.+.. ++++.+++.|.+||+.++....    +...|.+++|+|+|  ++++..||+|+
T Consensus       113 v~sl~~~~~~~~~~~~v~~i~~~~p~-~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~  185 (388)
T 1xip_A          113 LEELSEFRTVTSFEKPVFQLKNVNNT-LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQ  185 (388)
T ss_dssp             SSSTTCEEEEEECSSCEEEEEECSSE-EEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCEE
T ss_pred             chhhhccCccceeecceeeEEecCCC-EEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcEE
Confidence            98876666666778889888877653 4444456699999999887654    23579999999999  78899999999


Q ss_pred             EEECCCCce---EEe------c---ccCCceEEEEEeCCCCEEEEEE
Q 047260          741 LWNMAENKS---MTI------A---AHENIISALAQSPVTGMVASAS  775 (784)
Q Consensus       741 Iwdl~~~~~---~~~------~---~h~~~V~slafspdg~~LaSgs  775 (784)
                      +|+......   .++      .   +|...|.+|.|.+++.++++-+
T Consensus       186 ~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~  232 (388)
T 1xip_A          186 SFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG  232 (388)
T ss_dssp             EEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             EEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence            999888773   234      2   3788999999999998887643

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.15  E-value=8.8e-09  Score=112.50  Aligned_cols=253  Identities=6%  Similarity=0.027  Sum_probs=162.6

Q ss_pred             CCEEEEEeCCCeEEEEECCCCceeeecCCC---------CCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeecc
Q 047260          519 GKLLASSGHDRKVVLWNMDTLQTESTPEDH---------KSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYT  589 (784)
Q Consensus       519 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h---------~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~  589 (784)
                      +..|++++.++.|..||.++++.+..+...         ...+.+.. ..++..+++++.++.|..+|.++++..-. ..
T Consensus        53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~v~~~~g~l~a~d~~tG~~~W~-~~  130 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGV-TVSGGHVYIGSEKAQVYALNTSDGTVAWQ-TK  130 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEE-EEETTEEEEEETTSEEEEEETTTCCEEEE-EE
T ss_pred             CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCc-eEeCCEEEEEcCCCEEEEEECCCCCEEEE-Ee
Confidence            567888888999999999999988766542         22232222 22456788889999999999998874322 22


Q ss_pred             CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCC--e------eEEEEecCCCEEEEEECCCcEEEEEC
Q 047260          590 GHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGG--T------AQVRFQPRIGQLLAAASDKVVSIFDI  661 (784)
Q Consensus       590 ~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~--v------~~v~fsp~~~~Ll~~s~Dg~I~IwDl  661 (784)
                      ............ + . .+++++.++.|..+|..+++.+......  +      ....+.  +..+++++.++.|..+|.
T Consensus       131 ~~~~~~~~p~~~-~-~-~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~  205 (376)
T 3q7m_A          131 VAGEALSRPVVS-D-G-LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLM  205 (376)
T ss_dssp             CSSCCCSCCEEE-T-T-EEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEET
T ss_pred             CCCceEcCCEEE-C-C-EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEEC
Confidence            221111112222 2 2 5667788999999999988777655432  1      111222  467888888999999999


Q ss_pred             CCCeEEEEEeCCCCC----EE---EEEEcC--CCCEEEEEe-CCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEE
Q 047260          662 ETDRQTHSLQGHAEL----VN---YICWDT--NGDYLASVS-QNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLL  731 (784)
Q Consensus       662 ~t~~~i~~l~~h~~~----V~---sl~~sp--dg~~Lasgs-dd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~  731 (784)
                      ++++.+.........    +.   .+...|  .+..++.++ ++.|..+|..+++.+......  ....+..  ++..++
T Consensus       206 ~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~--~~~~~~~--~~~~l~  281 (376)
T 3q7m_A          206 EQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELG--SVNDFIV--DGNRIY  281 (376)
T ss_dssp             TTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCC--CEEEEEE--ETTEEE
T ss_pred             CCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCC--CCCCceE--ECCEEE
Confidence            999888776532110    00   011111  234455555 569999999999988776532  2344444  356789


Q ss_pred             EEECCCeEEEEECCCCceEEecc--cCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          732 VVGGISSLELWNMAENKSMTIAA--HENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       732 s~s~dg~I~Iwdl~~~~~~~~~~--h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      +++.++.|..+|..+++.+....  ....+......  +..|+.++.+|.|.+||
T Consensus       282 ~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~--~~~l~v~~~~g~l~~~d  334 (376)
T 3q7m_A          282 LVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY--NGNLVVGDSEGYLHWIN  334 (376)
T ss_dssp             EEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE--TTEEEEECTTSEEEEEE
T ss_pred             EEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE--CCEEEEEeCCCeEEEEE
Confidence            99999999999999998773222  12223333332  56788888888888775

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.15  E-value=6.6e-09  Score=123.63  Aligned_cols=254  Identities=10%  Similarity=0.040  Sum_probs=165.5

Q ss_pred             CCEEEEEeCCCeEEEEECCCCceeeecCCC--CCCeEEEEEcc---CCCEEEEEe------CCCeEEEEcCCCCcceeee
Q 047260          519 GKLLASSGHDRKVVLWNMDTLQTESTPEDH--KSVVTDVRFRP---NSSQLATAS------VDKSVRLWDAANPNFCSQA  587 (784)
Q Consensus       519 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h--~~~It~i~fsp---dg~~Latgs------~Dg~I~IWdl~~~~~~~~~  587 (784)
                      +..|++++.|+.|+.+|.++++.+..+...  ......+..+|   ++ .+++++      .++.|+.||.++++..-..
T Consensus       121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~  199 (689)
T 1yiq_A          121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRF  199 (689)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence            557888889999999999999998776532  11111111122   44 444443      3789999999998843322


Q ss_pred             ccC------------------------------CCCCeEEEEEcCCCCcEEEEEeCCC-------------------eEE
Q 047260          588 YTG------------------------------HSSPIMSLDFHPKKTDLFCFCDNDN-------------------EIQ  618 (784)
Q Consensus       588 ~~~------------------------------h~~~V~sl~~sp~~~~ll~sgs~dg-------------------~I~  618 (784)
                      ...                              +......+++.|+.. +++.+..++                   .|.
T Consensus       200 ~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~  278 (689)
T 1yiq_A          200 YTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELN-LLYIGVGNGSLWDPKWRSQAKGDNLFLSSIV  278 (689)
T ss_dssp             ESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHHTTCSCCTTTTEEE
T ss_pred             cccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence            210                              001112567888766 566666665                   499


Q ss_pred             EEeCCCCeeEEeecC------------CeeEEEEecCCC---EEEEEECCCcEEEEECCCCeEEEEEeCCC-CC------
Q 047260          619 YWSINPFLCTHITKG------------GTAQVRFQPRIG---QLLAAASDKVVSIFDIETDRQTHSLQGHA-EL------  676 (784)
Q Consensus       619 iwDl~~~~~~~~~~~------------~v~~v~fsp~~~---~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~-~~------  676 (784)
                      .+|.++++.+..+..            ......+..++.   .+++++.+|.|+++|.++++.+....... ..      
T Consensus       279 AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~  358 (689)
T 1yiq_A          279 AVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDM  358 (689)
T ss_dssp             EEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEET
T ss_pred             EEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCc
Confidence            999999888765542            111122223444   67788889999999999999875443211 00      


Q ss_pred             --------------------------------EEEEEEcCCCCEEEEEe-------------------------------
Q 047260          677 --------------------------------VNYICWDTNGDYLASVS-------------------------------  693 (784)
Q Consensus       677 --------------------------------V~sl~~spdg~~Lasgs-------------------------------  693 (784)
                                                      ...++++|+..++++..                               
T Consensus       359 ~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  438 (689)
T 1yiq_A          359 KTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGM  438 (689)
T ss_dssp             TTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECC
T ss_pred             cCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccc
Confidence                                            11267888877777652                               


Q ss_pred             ---------------CCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE-Eeccc-C
Q 047260          694 ---------------QNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM-TIAAH-E  756 (784)
Q Consensus       694 ---------------dd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h-~  756 (784)
                                     ++.|+.||+.+++.+..+..+. .+....+...+..+++++.||.|+.||.++++.+ .+... .
T Consensus       439 ~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~  517 (689)
T 1yiq_A          439 MPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASG  517 (689)
T ss_dssp             CCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred             cCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCC
Confidence                           1469999999999998887653 2333466667889999999999999999999988 33322 2


Q ss_pred             CceEEEEEeCCCC-EEEEEE
Q 047260          757 NIISALAQSPVTG-MVASAS  775 (784)
Q Consensus       757 ~~V~slafspdg~-~LaSgs  775 (784)
                      ....-+.|..+|+ ++++.+
T Consensus       518 ~~~~p~ty~~~G~qyv~~~~  537 (689)
T 1yiq_A          518 VMAAPVTYSVDGEQYVTFMA  537 (689)
T ss_dssp             CCSCCEEEEETTEEEEEEEE
T ss_pred             cccCceEEEECCEEEEEEEe
Confidence            2224466777887 444443

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.14  E-value=5.3e-09  Score=124.19  Aligned_cols=253  Identities=6%  Similarity=-0.012  Sum_probs=168.5

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCceeeecCCC-C----CCeEEEEEccCCCEEEEEeC------CCeEEEEcCCCCcceee
Q 047260          518 DGKLLASSGHDRKVVLWNMDTLQTESTPEDH-K----SVVTDVRFRPNSSQLATASV------DKSVRLWDAANPNFCSQ  586 (784)
Q Consensus       518 dg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h-~----~~It~i~fspdg~~Latgs~------Dg~I~IWdl~~~~~~~~  586 (784)
                      ++..|++++.|+.|..+|..+++.+..+..+ .    ..+...-.. .+..+++++.      ++.|+.||..+++..-.
T Consensus       127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~  205 (677)
T 1kb0_A          127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWR  205 (677)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEE
Confidence            3567888899999999999999998887654 1    122211111 2345555543      79999999999874432


Q ss_pred             eccCCC-------------------------------CCeEEEEEcCCCCcEEEEEeCCC-------------------e
Q 047260          587 AYTGHS-------------------------------SPIMSLDFHPKKTDLFCFCDNDN-------------------E  616 (784)
Q Consensus       587 ~~~~h~-------------------------------~~V~sl~~sp~~~~ll~sgs~dg-------------------~  616 (784)
                      ......                               .....+++++++. +++.+..++                   .
T Consensus       206 ~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~-~vy~~~~~~~~w~~~~~~~~~gd~~~~~s  284 (677)
T 1kb0_A          206 WFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELN-TMYVGTGNGSPWSHKVRSPKGGDNLYLAS  284 (677)
T ss_dssp             EESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTTTE
T ss_pred             eccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCC-EEEEECCCCccccCCCCCccCCCCeeeEE
Confidence            221110                               1113567888876 444554443                   5


Q ss_pred             EEEEeCCCCeeEEeecC------------CeeEEEEecCC---CEEEEEECCCcEEEEECCCCeEEEEEeCCCC------
Q 047260          617 IQYWSINPFLCTHITKG------------GTAQVRFQPRI---GQLLAAASDKVVSIFDIETDRQTHSLQGHAE------  675 (784)
Q Consensus       617 I~iwDl~~~~~~~~~~~------------~v~~v~fsp~~---~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~------  675 (784)
                      |..+|.++++.+..+..            ....+....++   ..+++++.+|.|+++|.++++.+..+.....      
T Consensus       285 v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~  364 (677)
T 1kb0_A          285 IVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGY  364 (677)
T ss_dssp             EEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEE
T ss_pred             EEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCccccc
Confidence            99999999887765431            11222333466   5688888899999999999998877653211      


Q ss_pred             -----CE------------------------EEEEEcCCCCEEEEEeC--------------------------------
Q 047260          676 -----LV------------------------NYICWDTNGDYLASVSQ--------------------------------  694 (784)
Q Consensus       676 -----~V------------------------~sl~~spdg~~Lasgsd--------------------------------  694 (784)
                           .+                        ..++++|++.++++...                                
T Consensus       365 d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~  444 (677)
T 1kb0_A          365 DKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAK  444 (677)
T ss_dssp             CTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCE
T ss_pred             CCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccccc
Confidence                 11                        14678898887776431                                


Q ss_pred             ------------CeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceEE-ec-ccCCceE
Q 047260          695 ------------NLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMT-IA-AHENIIS  760 (784)
Q Consensus       695 ------------d~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~-~~-~h~~~V~  760 (784)
                                  +.|..||+.+++.+.++... ..+....+...+..+++++.||.|++||..+++.+. +. .+.....
T Consensus       445 ~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~  523 (677)
T 1kb0_A          445 FFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV-SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAA  523 (677)
T ss_dssp             EECSSCCCSCCEEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSC
T ss_pred             ccccccCCCCCccEEEEEeCCCCcEEeecCCC-CCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccC
Confidence                        47999999999998888643 344555677788889999999999999999999883 32 3322334


Q ss_pred             EEEEeCCCCEEEE
Q 047260          761 ALAQSPVTGMVAS  773 (784)
Q Consensus       761 slafspdg~~LaS  773 (784)
                      -+.|..+|+.+++
T Consensus       524 p~~y~~~G~~~v~  536 (677)
T 1kb0_A          524 PSTYMVDGRQYVS  536 (677)
T ss_dssp             CEEEEETTEEEEE
T ss_pred             CEEEEeCCEEEEE
Confidence            4566677774443

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.14  E-value=4e-09  Score=125.27  Aligned_cols=262  Identities=12%  Similarity=0.062  Sum_probs=178.0

Q ss_pred             CCEEEEEeCCCeEEEEECCCCceeeecCCCCCC-----------eEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeee
Q 047260          519 GKLLASSGHDRKVVLWNMDTLQTESTPEDHKSV-----------VTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQA  587 (784)
Q Consensus       519 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~-----------It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~  587 (784)
                      +..|++++.++.|..+|..+++.+..+......           ...+++  ++..|++++.|+.|..+|..+++.+-..
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~  154 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ  154 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence            456777788899999999999998877543210           112333  4568888999999999999998854332


Q ss_pred             ccCCC----CCeEE-EEEcCCCCcEEEEEe-----CCCeEEEEeCCCCeeEEeecC--C---------------------
Q 047260          588 YTGHS----SPIMS-LDFHPKKTDLFCFCD-----NDNEIQYWSINPFLCTHITKG--G---------------------  634 (784)
Q Consensus       588 ~~~h~----~~V~s-l~~sp~~~~ll~sgs-----~dg~I~iwDl~~~~~~~~~~~--~---------------------  634 (784)
                      -....    ..+.+ ..+.  +..+++.++     .++.|+.||.++++.+..+..  .                     
T Consensus       155 ~~~~~~~~~~~~~~~p~v~--~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~  232 (677)
T 1kb0_A          155 NTFEGQKGSLTITGAPRVF--KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPS  232 (677)
T ss_dssp             ETTTTCCSSCBCCSCCEEE--TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGG
T ss_pred             cCCcCcCcCcccccCcEEE--CCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccccccc
Confidence            22101    11111 1111  233443332     268999999998887755431  0                     


Q ss_pred             ------------eeEEEEecCCCEEEEEECCC-------------------cEEEEECCCCeEEEEEeC--CC-------
Q 047260          635 ------------TAQVRFQPRIGQLLAAASDK-------------------VVSIFDIETDRQTHSLQG--HA-------  674 (784)
Q Consensus       635 ------------v~~v~fsp~~~~Ll~~s~Dg-------------------~I~IwDl~t~~~i~~l~~--h~-------  674 (784)
                                  ...++++++++.++++..++                   .|..+|.++++.+..+..  |.       
T Consensus       233 g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~  312 (677)
T 1kb0_A          233 GKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTST  312 (677)
T ss_dssp             GCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCC
T ss_pred             CceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccC
Confidence                        02467899999999887664                   599999999999888764  21       


Q ss_pred             CCEEEEEEcCCC---CEEEEEeC-CeEEEEeCCCCceEEEeccCC-----------Cce---------------------
Q 047260          675 ELVNYICWDTNG---DYLASVSQ-NLVKVWSMASGECIQELSSNG-----------NQF---------------------  718 (784)
Q Consensus       675 ~~V~sl~~spdg---~~Lasgsd-d~I~IwDl~t~~~i~~l~~~~-----------~~I---------------------  718 (784)
                      .....+....+|   ..|+.++. +.|+++|..+|+.+..+....           ..+                     
T Consensus       313 ~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~  392 (677)
T 1kb0_A          313 QPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGA  392 (677)
T ss_dssp             SCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCS
T ss_pred             CCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccc
Confidence            112223333467   56777664 499999999999987765321           111                     


Q ss_pred             ---EEEEEecCCCEEEEEECC-------------------------------------------CeEEEEECCCCceEEe
Q 047260          719 ---HSCVFHPSYSTLLVVGGI-------------------------------------------SSLELWNMAENKSMTI  752 (784)
Q Consensus       719 ---~sl~fspdg~~L~s~s~d-------------------------------------------g~I~Iwdl~~~~~~~~  752 (784)
                         ..++|+|+...+++...+                                           +.|..||+.+++.+-.
T Consensus       393 ~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~  472 (677)
T 1kb0_A          393 HNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWS  472 (677)
T ss_dssp             SCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEE
T ss_pred             cCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEee
Confidence               146889998888776431                                           7899999999998855


Q ss_pred             cccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          753 AAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       753 ~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      ..+..++....+..++.++++++.||.|++||
T Consensus       473 ~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D  504 (677)
T 1kb0_A          473 VEHVSPWNGGTLTTAGNVVFQGTADGRLVAYH  504 (677)
T ss_dssp             EEESSSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred             cCCCCCCcCcceEeCCCEEEEECCCCcEEEEE
Confidence            55555566666777888999999999999986

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.13  E-value=1.9e-09  Score=128.38  Aligned_cols=232  Identities=10%  Similarity=0.104  Sum_probs=156.4

Q ss_pred             CCCCCeEEEEEccCCCEEEEEe-----CCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCC-------
Q 047260          547 DHKSVVTDVRFRPNSSQLATAS-----VDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDND-------  614 (784)
Q Consensus       547 ~h~~~It~i~fspdg~~Latgs-----~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~d-------  614 (784)
                      +|...+..++|+|||++||.+.     .+..|+|||+.+++.....+..  .....++|+ |+..++++...+       
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~  202 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD--VKFSGISWL-GNEGFFYSSYDKPDGSELS  202 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE--EESCCCEEE-TTTEEEEEESSCCC-----
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCC--ceeccEEEe-CCCEEEEEEecCccccccc
Confidence            4566789999999999988543     2357999999998743332221  113567899 988776665442       


Q ss_pred             -----CeEEEEeCCCCe----eEEeecC----CeeEEEEecCCCEEEEEEC----CCcEEEEECCCCe-EEEEEeCCCCC
Q 047260          615 -----NEIQYWSINPFL----CTHITKG----GTAQVRFQPRIGQLLAAAS----DKVVSIFDIETDR-QTHSLQGHAEL  676 (784)
Q Consensus       615 -----g~I~iwDl~~~~----~~~~~~~----~v~~v~fsp~~~~Ll~~s~----Dg~I~IwDl~t~~-~i~~l~~h~~~  676 (784)
                           ..|++|++.+..    .+.....    ....+.|+|++++|+....    +..|+++|+.++. ....+..+...
T Consensus       203 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~  282 (693)
T 3iuj_A          203 ARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDA  282 (693)
T ss_dssp             --CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSS
T ss_pred             ccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCc
Confidence                 349999997643    2332222    3567889999998876553    2589999998763 44556656665


Q ss_pred             EEEEEEcCCCCEEEEEe-C----CeEEEEeCCCCce--EEEeccCCCceEEEEEecCCCEEEEEECCC---eEEEEECCC
Q 047260          677 VNYICWDTNGDYLASVS-Q----NLVKVWSMASGEC--IQELSSNGNQFHSCVFHPSYSTLLVVGGIS---SLELWNMAE  746 (784)
Q Consensus       677 V~sl~~spdg~~Lasgs-d----d~I~IwDl~t~~~--i~~l~~~~~~I~sl~fspdg~~L~s~s~dg---~I~Iwdl~~  746 (784)
                      .... |+++|..|+..+ .    ..|.++|+.++..  ...+..+...+.  .|++++.+|+....++   .|++||+..
T Consensus       283 ~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g  359 (693)
T 3iuj_A          283 DVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEG  359 (693)
T ss_dssp             CEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTS
T ss_pred             eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCC
Confidence            5555 566666555444 2    2799999988754  345555655554  8999999888776654   799999986


Q ss_pred             CceEEec-ccCCceEEEEEeCCCCEEEEEECC----CcEEEeC
Q 047260          747 NKSMTIA-AHENIISALAQSPVTGMVASASHD----SSVKLWK  784 (784)
Q Consensus       747 ~~~~~~~-~h~~~V~slafspdg~~LaSgs~D----G~V~IWd  784 (784)
                      +....+. ...+.+..+.+++++..|+....+    +.|..||
T Consensus       360 ~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d  402 (693)
T 3iuj_A          360 KRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFE  402 (693)
T ss_dssp             CEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEEC
T ss_pred             CeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEE
Confidence            6554443 345677888888888765554433    6677665

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.09  E-value=1.3e-07  Score=98.09  Aligned_cols=244  Identities=10%  Similarity=0.015  Sum_probs=159.0

Q ss_pred             CEEEEEeCCCeEEEEECCCCcee-----eecCCCCCCeEEEEEccCCCEEEEEe-CCCeEEEEcCCCCcceeeeccCCCC
Q 047260          520 KLLASSGHDRKVVLWNMDTLQTE-----STPEDHKSVVTDVRFRPNSSQLATAS-VDKSVRLWDAANPNFCSQAYTGHSS  593 (784)
Q Consensus       520 ~~Lasgs~Dg~I~IWd~~t~~~~-----~~l~~h~~~It~i~fspdg~~Latgs-~Dg~I~IWdl~~~~~~~~~~~~h~~  593 (784)
                      .+|+.+.. +.|+.++++.....     ..+......+..++|++++..|+.+. .++.|.++++.... ..........
T Consensus         2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~-~~~~~~~~~~   79 (267)
T 1npe_A            2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE-PTTIIRQDLG   79 (267)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC-CEEEECTTCC
T ss_pred             cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCC-cEEEEECCCC
Confidence            45555553 47888888754321     11111224578999999766565554 56899999997654 2222222235


Q ss_pred             CeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEEEECC---CcEEEEECCCCeEE
Q 047260          594 PIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLAAASD---KVVSIFDIETDRQT  667 (784)
Q Consensus       594 ~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~~s~D---g~I~IwDl~t~~~i  667 (784)
                      ....+++++++..++++....+.|.+++++.........   .....++++|+++.|+++...   +.|..+++.... .
T Consensus        80 ~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~  158 (267)
T 1npe_A           80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-R  158 (267)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-C
T ss_pred             CccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-c
Confidence            678999999877788877778899999997533222222   456789999988888777753   688888876432 2


Q ss_pred             EEE-eCCCCCEEEEEEcCCCCEEEEEeC--CeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEEC-CCeEEEEE
Q 047260          668 HSL-QGHAELVNYICWDTNGDYLASVSQ--NLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGG-ISSLELWN  743 (784)
Q Consensus       668 ~~l-~~h~~~V~sl~~spdg~~Lasgsd--d~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~-dg~I~Iwd  743 (784)
                      ..+ .........+++++++..|+.+..  +.|.++|+........+.. ......+++.  +..|+++.. .+.|.++|
T Consensus       159 ~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d--~~~lyva~~~~~~v~~~d  235 (267)
T 1npe_A          159 RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY--GKNLYYTDWKTNSVIAMD  235 (267)
T ss_dssp             EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred             EEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEEe--CCEEEEEECCCCeEEEEe
Confidence            222 233346789999998877766663  3999999976543333332 2334566654  456666664 57999999


Q ss_pred             CCCCceEEe-cccC-CceEEEEEeCCCC
Q 047260          744 MAENKSMTI-AAHE-NIISALAQSPVTG  769 (784)
Q Consensus       744 l~~~~~~~~-~~h~-~~V~slafspdg~  769 (784)
                      ..+++.+.. .... .....+++.|++.
T Consensus       236 ~~~g~~~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          236 LAISKEMDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             TTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred             CCCCCceEEEccccccccceeeecCccC
Confidence            998887633 3222 2477888888764

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.05  E-value=2.2e-09  Score=114.16  Aligned_cols=254  Identities=7%  Similarity=0.003  Sum_probs=166.9

Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCC
Q 047260          513 CHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHS  592 (784)
Q Consensus       513 l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~  592 (784)
                      ..+..++. |.+++.++.|..|| .+++....+..+...+.++...+++. |+.++.+  |..+|. +++ ....+....
T Consensus        25 ~~~d~~g~-l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~-~~~~~~~~~   97 (330)
T 3hxj_A           25 PILAKNGT-IYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGT-EKWRFDTKK   97 (330)
T ss_dssp             CEECTTSC-EECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGG-GGGGSCC--
T ss_pred             ceEccCCe-EEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCc-EEEEEECCC
Confidence            34445554 56677788899999 88888777655555567777776664 5555554  888886 433 222222222


Q ss_pred             CCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEE
Q 047260          593 SPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHS  669 (784)
Q Consensus       593 ~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~  669 (784)
                      .......+. ++  .+..++.++.|..+|.. ++......   ..+.++.+.+++ .+++++.++.|..||.. ++.+..
T Consensus        98 ~~~~~~~~~-~~--~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g-~l~vgt~~~~l~~~d~~-g~~~~~  171 (330)
T 3hxj_A           98 AIVSDFTIF-ED--ILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDG-TIYVGSNDNYLYAINPD-GTEKWR  171 (330)
T ss_dssp             ---CCEEEE-TT--EEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTS-CEEEECTTSEEEEECTT-SCEEEE
T ss_pred             CcccCceEE-CC--EEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCC-EEEEEcCCCEEEEECCC-CCEeEE
Confidence            222233333 32  46667778999999988 55443332   223455555554 47778888999999999 877777


Q ss_pred             EeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCce
Q 047260          670 LQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKS  749 (784)
Q Consensus       670 l~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~  749 (784)
                      +......+.++...+++.++++.  +.|..|| .+++.+..+......+.++.+.+++. |++++.++.|..+|......
T Consensus       172 ~~~~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~~g~~~  247 (330)
T 3hxj_A          172 FKTNDAITSAASIGKDGTIYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINPDGTEK  247 (330)
T ss_dssp             EECSSCCCSCCEECTTCCEEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECTTSCEE
T ss_pred             EecCCCceeeeEEcCCCEEEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECCCCCEe
Confidence            76666677778888888866655  8899999 78888877776667788888888875 77777788888888544333


Q ss_pred             EEecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          750 MTIAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       750 ~~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      .........+.++.+.+++ .|..++.+|.|..+|
T Consensus       248 ~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d  281 (330)
T 3hxj_A          248 WRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAIN  281 (330)
T ss_dssp             EEEECSSCCCSCCEECTTS-CEEEECTTCEEEEEC
T ss_pred             EEeeCCCCccccceEcCCC-eEEEecCCCCEEEEC
Confidence            3444444444556665555 455677777777765

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.97  E-value=4.9e-07  Score=100.22  Aligned_cols=215  Identities=10%  Similarity=0.087  Sum_probs=147.3

Q ss_pred             CCCCEEEE-EeCCCeEEEEECCCC----ceeeecC------C-CCCCeEEEEEccCCCEEEEEeCC------CeEEEEcC
Q 047260          517 SDGKLLAS-SGHDRKVVLWNMDTL----QTESTPE------D-HKSVVTDVRFRPNSSQLATASVD------KSVRLWDA  578 (784)
Q Consensus       517 pdg~~Las-gs~Dg~I~IWd~~t~----~~~~~l~------~-h~~~It~i~fspdg~~Latgs~D------g~I~IWdl  578 (784)
                      .++++|++ +..++.|.|+|+.+.    +.+++++      . ....-..+...|++ +++++..+      +.|.++|.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~  171 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH  171 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence            78887765 556788999999755    5555552      1 11245667888999 77776665      78999999


Q ss_pred             CCCcceeeecc-C-CC-CCeEEEEEcCCCCcEEEEEe-------------------CCCeEEEEeCCCCeeEEeecCC--
Q 047260          579 ANPNFCSQAYT-G-HS-SPIMSLDFHPKKTDLFCFCD-------------------NDNEIQYWSINPFLCTHITKGG--  634 (784)
Q Consensus       579 ~~~~~~~~~~~-~-h~-~~V~sl~~sp~~~~ll~sgs-------------------~dg~I~iwDl~~~~~~~~~~~~--  634 (784)
                      ++.+ ++..+. + .. ..-..+.|+|+++ .+++..                   .+..|.+||+.+.+.+..+.-.  
T Consensus       172 ~T~~-v~~~~~~~~~~~~~~Yd~~~~p~~~-~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~  249 (462)
T 2ece_A          172 YSFE-PLGKWEIDRGDQYLAYDFWWNLPNE-VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEE  249 (462)
T ss_dssp             TTCC-EEEECCSBCTTCCCCCCEEEETTTT-EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTT
T ss_pred             CCCe-EEEEEccCCCCccccceEEECCCCC-EEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCC
Confidence            9877 444443 2 11 2244688899988 444443                   3789999999987776665532  


Q ss_pred             ---eeEEEE--ecCCCEEEEEEC------CCcEEEEECCCCeE--EEEE--eCC----------------CCCEEEEEEc
Q 047260          635 ---TAQVRF--QPRIGQLLAAAS------DKVVSIFDIETDRQ--THSL--QGH----------------AELVNYICWD  683 (784)
Q Consensus       635 ---v~~v~f--sp~~~~Ll~~s~------Dg~I~IwDl~t~~~--i~~l--~~h----------------~~~V~sl~~s  683 (784)
                         ...+.|  +|+++++++++.      ++.|.+|....++.  ...+  ...                ......|.++
T Consensus       250 g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS  329 (462)
T 2ece_A          250 NRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDIS  329 (462)
T ss_dssp             EEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEEC
T ss_pred             CCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEEC
Confidence               344555  999999888874      56888776654421  1111  110                2346789999


Q ss_pred             CCCCEEEEEeC--CeEEEEeCCC---CceEEEeccCCC--------------ceEEEEEecCCCEEEEEE
Q 047260          684 TNGDYLASVSQ--NLVKVWSMAS---GECIQELSSNGN--------------QFHSCVFHPSYSTLLVVG  734 (784)
Q Consensus       684 pdg~~Lasgsd--d~I~IwDl~t---~~~i~~l~~~~~--------------~I~sl~fspdg~~L~s~s  734 (784)
                      +||++|.++..  +.|.+||+..   .+.+..+...+.              .-..+.++|+|++|+++.
T Consensus       330 ~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          330 LDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             TTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             CCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            99999999884  4999999863   355555543311              358899999999999998

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.97  E-value=2.1e-07  Score=103.24  Aligned_cols=215  Identities=8%  Similarity=-0.019  Sum_probs=146.5

Q ss_pred             cCCCEEEEE-eCCCeEEEEcCCCCc---ceeeecc------C-CCCCeEEEEEcCCCCcEEEEEeCC------CeEEEEe
Q 047260          559 PNSSQLATA-SVDKSVRLWDAANPN---FCSQAYT------G-HSSPIMSLDFHPKKTDLFCFCDND------NEIQYWS  621 (784)
Q Consensus       559 pdg~~Latg-s~Dg~I~IWdl~~~~---~~~~~~~------~-h~~~V~sl~~sp~~~~ll~sgs~d------g~I~iwD  621 (784)
                      .+.++|++. ..++.|.|+|+.+..   ...+++.      . .......+...|++  +++++..+      +.|.++|
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD  170 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGILMLD  170 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEEEEC
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEEEEE
Confidence            777777664 457889999997541   1233331      0 11234567788998  56565544      7899999


Q ss_pred             CCCCeeEEeecCC------eeEEEEecCCCEEEEEE-------------------CCCcEEEEECCCCeEEEEEeCC-C-
Q 047260          622 INPFLCTHITKGG------TAQVRFQPRIGQLLAAA-------------------SDKVVSIFDIETDRQTHSLQGH-A-  674 (784)
Q Consensus       622 l~~~~~~~~~~~~------v~~v~fsp~~~~Ll~~s-------------------~Dg~I~IwDl~t~~~i~~l~~h-~-  674 (784)
                      ..+.+.+......      ...+.|+|+++.+++..                   .+..|.+||+.+++.+.++... . 
T Consensus       171 ~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g  250 (462)
T 2ece_A          171 HYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEEN  250 (462)
T ss_dssp             TTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTE
T ss_pred             CCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCC
Confidence            9998888777622      34588899999888874                   3689999999999888888753 2 


Q ss_pred             CCEEEEEE--cCCCCEEEEEeC-----C--eEEEEeCCCCc--eEEEe--ccC----------------CCceEEEEEec
Q 047260          675 ELVNYICW--DTNGDYLASVSQ-----N--LVKVWSMASGE--CIQEL--SSN----------------GNQFHSCVFHP  725 (784)
Q Consensus       675 ~~V~sl~~--spdg~~Lasgsd-----d--~I~IwDl~t~~--~i~~l--~~~----------------~~~I~sl~fsp  725 (784)
                      .....+.|  +|++++++++.+     .  +|.+|....++  .+..+  ...                ......+.+++
T Consensus       251 ~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~  330 (462)
T 2ece_A          251 RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISL  330 (462)
T ss_dssp             EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECT
T ss_pred             CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECC
Confidence            23445555  999998887765     3  77776655442  11211  110                24568899999


Q ss_pred             CCCEEEEEECC-CeEEEEECCCC---ceEEecccC---------------CceEEEEEeCCCCEEEEEE
Q 047260          726 SYSTLLVVGGI-SSLELWNMAEN---KSMTIAAHE---------------NIISALAQSPVTGMVASAS  775 (784)
Q Consensus       726 dg~~L~s~s~d-g~I~Iwdl~~~---~~~~~~~h~---------------~~V~slafspdg~~LaSgs  775 (784)
                      |+++|+++... +.|.+||+...   +.+....-.               +....++++|||++|+++.
T Consensus       331 DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          331 DDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             TSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             CCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            99999888874 79999998643   222111111               1368899999999999887

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.95  E-value=1.4e-08  Score=109.97  Aligned_cols=226  Identities=10%  Similarity=-0.011  Sum_probs=146.7

Q ss_pred             cCCCceEEEEEcCCCCEEEEEeC-----CCeEEEEECCCCceeeecCC------CCCCeEEEEEccCCCEE-EEEe---C
Q 047260          505 SRNSKVTCCHFSSDGKLLASSGH-----DRKVVLWNMDTLQTESTPED------HKSVVTDVRFRPNSSQL-ATAS---V  569 (784)
Q Consensus       505 ~H~~~V~~l~fspdg~~Lasgs~-----Dg~I~IWd~~t~~~~~~l~~------h~~~It~i~fspdg~~L-atgs---~  569 (784)
                      .|-..+.+++|+++++++++-..     ++.|.+||+.+++.+..+..      +...+..+++++++..+ ++..   .
T Consensus        64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~  143 (343)
T 2qe8_A           64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD  143 (343)
T ss_dssp             CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred             cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence            46678999999999986665443     57899999998887665532      23456899999865454 5544   5


Q ss_pred             CCeEEEEcCCCCcceeeeccCCCCCeE-EEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCCeeEEEEecCCCEEE
Q 047260          570 DKSVRLWDAANPNFCSQAYTGHSSPIM-SLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLL  648 (784)
Q Consensus       570 Dg~I~IWdl~~~~~~~~~~~~h~~~V~-sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v~~v~fsp~~~~Ll  648 (784)
                      ++.|.+||+.+++ ..+.+.+|..... ...+.+++. .+.+.+.++.++.|.           ..+..++|+|+++.|+
T Consensus       144 ~~~i~v~d~~~g~-~~r~~~~~~~~~~~~~~~~~~g~-~~~~~~~~g~~~~~~-----------~~~~gia~s~dg~~ly  210 (343)
T 2qe8_A          144 KAALIRVDLQTGL-AARVLQGYPGIAPEDIDLVIDGV-PVQIGQPDGTVIRPH-----------LGVNGIVLDAENEWLY  210 (343)
T ss_dssp             GCEEEEEETTTCC-EEEECTTCTTTSCCSCCCEETTE-ECBEECTTSCEECCC-----------CCEEEEEECTTSCEEE
T ss_pred             CCeEEEEECCCCC-EEEEecCCCcccccccceeECCE-EEEeccCCCceecee-----------cccceeEeccCCCEEE
Confidence            7899999998766 4444444322110 023333443 444556677766553           2467799999999999


Q ss_pred             EEECCC-cEEEEECC---CCe-----EE--EEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEecc-CC
Q 047260          649 AAASDK-VVSIFDIE---TDR-----QT--HSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSS-NG  715 (784)
Q Consensus       649 ~~s~Dg-~I~IwDl~---t~~-----~i--~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~-~~  715 (784)
                      ++..++ .|..++..   .+.     ..  ....++......++++++|.++++...+ .|.+||..+++....... ..
T Consensus       211 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~  290 (343)
T 2qe8_A          211 LSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKL  290 (343)
T ss_dssp             EEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGG
T ss_pred             EEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCce
Confidence            888765 56666532   110     00  0111233455678999999988887754 999999866664333322 23


Q ss_pred             CceEEEEEecCCCEEEEEECCCeEEEEE
Q 047260          716 NQFHSCVFHPSYSTLLVVGGISSLELWN  743 (784)
Q Consensus       716 ~~I~sl~fspdg~~L~s~s~dg~I~Iwd  743 (784)
                      ..+.+|+|.+++..+++.+..+.+.+|.
T Consensus       291 ~~p~~va~~~~g~l~v~~~~~~~~~~f~  318 (343)
T 2qe8_A          291 SWTDSFNFGSDGYLYFDCNQLHHSAPLN  318 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred             ecCCeeEECCCCcEEEEeCccccccccc
Confidence            4578999999988777766555554443

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.93  E-value=4.1e-10  Score=123.73  Aligned_cols=199  Identities=10%  Similarity=0.016  Sum_probs=110.7

Q ss_pred             CCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCCee---
Q 047260          560 NSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTA---  636 (784)
Q Consensus       560 dg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v~---  636 (784)
                      ++..|++++.|+.|+.||..+++.. ..+..  +.+.+..+..++. ++++++.|+.|+.||..+++.+........   
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~-W~~~~--~~~~s~p~~~~g~-~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~   83 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIK-WTLKE--DPVLQVPTHVEEP-AFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELV   83 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEE-EEEEC--CCSCCCC-----C-CEEECTTTCCEEEC-----CCSEECSCCHHHHH
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEE-EEecC--CCceecceEcCCC-EEEEeCCCCEEEEEECCCCceeeeeeccCcccc
Confidence            5778999999999999999998743 33333  3444444555554 566677899999999987766544432210   


Q ss_pred             --EEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeC-CeEEEEeCCCCceEEEecc
Q 047260          637 --QVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQ-NLVKVWSMASGECIQELSS  713 (784)
Q Consensus       637 --~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsd-d~I~IwDl~t~~~i~~l~~  713 (784)
                        ...+ ..++.+++++.++.|+.||.++++.+..+..+.    .+.++|++..|++++. +.|+.||.++++.+..+..
T Consensus        84 ~~sp~~-~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~  158 (369)
T 2hz6_A           84 QASPCR-SSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATY  158 (369)
T ss_dssp             TTCSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEE
T ss_pred             ccCceE-ecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEec
Confidence              0111 134677888889999999999999888776543    2345567777777764 5999999999987766542


Q ss_pred             CCCceEEEEEecCC---CEEEEEECCCeEEEEECCCCceEEecccCCceEE-EEEeCCCC
Q 047260          714 NGNQFHSCVFHPSY---STLLVVGGISSLELWNMAENKSMTIAAHENIISA-LAQSPVTG  769 (784)
Q Consensus       714 ~~~~I~sl~fspdg---~~L~s~s~dg~I~Iwdl~~~~~~~~~~h~~~V~s-lafspdg~  769 (784)
                      ..  ....++.++.   ..+++++.+|.|+.||..+++.+.......++.. ..+++++.
T Consensus       159 ~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~  216 (369)
T 2hz6_A          159 FD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGL  216 (369)
T ss_dssp             EE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSC
T ss_pred             cc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEEecCCce
Confidence            21  1222333332   5688889999999999999988744444555543 34445553

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.93  E-value=1.4e-07  Score=111.71  Aligned_cols=262  Identities=11%  Similarity=0.077  Sum_probs=169.5

Q ss_pred             CCEEEEEeCCCeEEEEECCCCceeeecCCCCCC----------e-EEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeee
Q 047260          519 GKLLASSGHDRKVVLWNMDTLQTESTPEDHKSV----------V-TDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQA  587 (784)
Q Consensus       519 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~----------I-t~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~  587 (784)
                      +..|++++.++.|..+|..+++.+..+......          + ..+.+  .+..|++++.|+.|..+|.++++.+-..
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~  143 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ  143 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence            456777888999999999999998887543211          1 11222  3557888889999999999998854333


Q ss_pred             ccCCC---CCeEE-EEEcCCCCcEEEEEe-----CCCeEEEEeCCCCeeEEeecC----C--------------------
Q 047260          588 YTGHS---SPIMS-LDFHPKKTDLFCFCD-----NDNEIQYWSINPFLCTHITKG----G--------------------  634 (784)
Q Consensus       588 ~~~h~---~~V~s-l~~sp~~~~ll~sgs-----~dg~I~iwDl~~~~~~~~~~~----~--------------------  634 (784)
                      .....   ..+.+ ..+.  +..+++.++     .+|.|+.+|.++++.+..+..    +                    
T Consensus       144 ~~~~~~~~~~~~~~P~v~--~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~  221 (668)
T 1kv9_A          144 QTTDPAKPYSITGAPRVV--KGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQ  221 (668)
T ss_dssp             ECSCTTSSCBCCSCCEEE--TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSC
T ss_pred             ccCCCCCcceecCCCEEE--CCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccc
Confidence            22111   11110 1111  232333322     258999999999887765531    0                    


Q ss_pred             ----------eeEEEEecCCCEEEEEECCC-------------------cEEEEECCCCeEEEEEeC--CC-------CC
Q 047260          635 ----------TAQVRFQPRIGQLLAAASDK-------------------VVSIFDIETDRQTHSLQG--HA-------EL  676 (784)
Q Consensus       635 ----------v~~v~fsp~~~~Ll~~s~Dg-------------------~I~IwDl~t~~~i~~l~~--h~-------~~  676 (784)
                                ...+++.+..+.++++..++                   .|..+|.++++.+..+..  |.       .+
T Consensus       222 ~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~  301 (668)
T 1kv9_A          222 YWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQ  301 (668)
T ss_dssp             HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred             eeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCC
Confidence                      01367888888888887765                   399999999999888764  22       22


Q ss_pred             EEEEEEcCCCC---EEEEEe-CCeEEEEeCCCCceEEEeccCC------------Cc-----------------------
Q 047260          677 VNYICWDTNGD---YLASVS-QNLVKVWSMASGECIQELSSNG------------NQ-----------------------  717 (784)
Q Consensus       677 V~sl~~spdg~---~Lasgs-dd~I~IwDl~t~~~i~~l~~~~------------~~-----------------------  717 (784)
                      .....+..+|+   +|+.++ ++.++++|..+|+.+..+....            .+                       
T Consensus       302 ~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~  381 (668)
T 1kv9_A          302 ITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAH  381 (668)
T ss_dssp             EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSS
T ss_pred             cEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCcccc
Confidence            33333334665   566666 4499999999999885443211            00                       


Q ss_pred             -eEEEEEecCCCEEEEEE------------------------------------CCCeEEEEECCCCceEEecccCCceE
Q 047260          718 -FHSCVFHPSYSTLLVVG------------------------------------GISSLELWNMAENKSMTIAAHENIIS  760 (784)
Q Consensus       718 -I~sl~fspdg~~L~s~s------------------------------------~dg~I~Iwdl~~~~~~~~~~h~~~V~  760 (784)
                       -..++++|+...+++..                                    .+|.|..||+.+++.+-...+...+.
T Consensus       382 ~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~  461 (668)
T 1kv9_A          382 NWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWN  461 (668)
T ss_dssp             CSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCC
T ss_pred             CCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCCCc
Confidence             01267788777666521                                    23789999999999873333333444


Q ss_pred             EEEEeCCCCEEEEEECCCcEEEeC
Q 047260          761 ALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       761 slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      ...+...+.+|++++.||.|++||
T Consensus       462 ~~~~~t~gg~vf~g~~dg~l~a~d  485 (668)
T 1kv9_A          462 GGTLSTAGNLVFQGTAAGQMHAYS  485 (668)
T ss_dssp             CCEEEETTTEEEEECTTSEEEEEE
T ss_pred             CceeEeCCCEEEEECCcccchhhh
Confidence            444555688999999999999986

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.92  E-value=3.8e-08  Score=112.66  Aligned_cols=252  Identities=12%  Similarity=0.066  Sum_probs=168.7

Q ss_pred             EEEEeCCCeEEEEECCCCceeeecCC---------------------------------C------CCCeEEEEEcc---
Q 047260          522 LASSGHDRKVVLWNMDTLQTESTPED---------------------------------H------KSVVTDVRFRP---  559 (784)
Q Consensus       522 Lasgs~Dg~I~IWd~~t~~~~~~l~~---------------------------------h------~~~It~i~fsp---  559 (784)
                      |.+|+..|.|+|+-+.+++.+..+..                                 +      .+.......+.   
T Consensus        18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g   97 (595)
T 1fwx_A           18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   97 (595)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred             EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence            56678888888887777665544310                                 0      11222345554   


Q ss_pred             --CCCEEEEEeC-CCeEEEEcCCCCcceeeecc-CCCCCeEEEEE-c-CCCCcEEEEE-----------------eCCCe
Q 047260          560 --NSSQLATASV-DKSVRLWDAANPNFCSQAYT-GHSSPIMSLDF-H-PKKTDLFCFC-----------------DNDNE  616 (784)
Q Consensus       560 --dg~~Latgs~-Dg~I~IWdl~~~~~~~~~~~-~h~~~V~sl~~-s-p~~~~ll~sg-----------------s~dg~  616 (784)
                        ||++|+.+.. +..|.+.|+++.+ +..++. .....+..+++ . |++.++++.+                 ..++.
T Consensus        98 ~~DG~~lfVnd~~~~rVavIdl~t~~-~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~  176 (595)
T 1fwx_A           98 KYDGRFLFMNDKANTRVARVRCDVMK-CDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV  176 (595)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTE-EEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred             CcCCCEEEEEcCCCCEEEEEECCCce-EeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCce
Confidence              7888877765 4579999999876 344222 22345788887 4 8998777765                 23568


Q ss_pred             EEEEeCCCCeeEEeec--CCeeEEEEecCCCEEEEEECCC--------------------------------------cE
Q 047260          617 IQYWSINPFLCTHITK--GGTAQVRFQPRIGQLLAAASDK--------------------------------------VV  656 (784)
Q Consensus       617 I~iwDl~~~~~~~~~~--~~v~~v~fsp~~~~Ll~~s~Dg--------------------------------------~I  656 (784)
                      +.++|..+.+......  +...-++++|+++++++++.+.                                      .|
T Consensus       177 vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V  256 (595)
T 1fwx_A          177 FTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV  256 (595)
T ss_dssp             EEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred             EEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence            9999999887766554  4456688999999999988643                                      47


Q ss_pred             EEEECCC--CeE-EEEEeCCCCCEEEEEEcCCCCEEEEEeC--CeEEEEeCCCCc------------eEEEeccCCCceE
Q 047260          657 SIFDIET--DRQ-THSLQGHAELVNYICWDTNGDYLASVSQ--NLVKVWSMASGE------------CIQELSSNGNQFH  719 (784)
Q Consensus       657 ~IwDl~t--~~~-i~~l~~h~~~V~sl~~spdg~~Lasgsd--d~I~IwDl~t~~------------~i~~l~~~~~~I~  719 (784)
                      .|.|.++  ++. +..+.. .....++.++|||+++++++.  +.|.++|+.+.+            .+.++ .-+....
T Consensus       257 ~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v-~vG~gP~  334 (595)
T 1fwx_A          257 KVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP-ELGLGPL  334 (595)
T ss_dssp             EEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC-BCCSCEE
T ss_pred             EEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc-CCCCCcc
Confidence            7777776  444 444432 234467899999999999884  499999998653            33344 3345578


Q ss_pred             EEEEecCCCEEEEEECCCeEEEEECCC----------CceE-EecccCCce-----EEEEEeCCCCEEEEEEC
Q 047260          720 SCVFHPSYSTLLVVGGISSLELWNMAE----------NKSM-TIAAHENII-----SALAQSPVTGMVASASH  776 (784)
Q Consensus       720 sl~fspdg~~L~s~s~dg~I~Iwdl~~----------~~~~-~~~~h~~~V-----~slafspdg~~LaSgs~  776 (784)
                      .++|+|+|...++..-|+.|.+||+..          ...+ ++..|-.+-     .++.++|||++|++++.
T Consensus       335 h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk  407 (595)
T 1fwx_A          335 HTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK  407 (595)
T ss_dssp             EEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred             eEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence            999999993334445578999999877          3333 344443321     22345799999998864

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.91  E-value=2.4e-07  Score=96.60  Aligned_cols=204  Identities=10%  Similarity=0.016  Sum_probs=145.4

Q ss_pred             ceeeecCCCCC--CeEEEEEccCCCEEEEEeC--CCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCC
Q 047260          540 QTESTPEDHKS--VVTDVRFRPNSSQLATASV--DKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDN  615 (784)
Q Consensus       540 ~~~~~l~~h~~--~It~i~fspdg~~Latgs~--Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg  615 (784)
                      +.+.++ .|..  ....+.|++++.++++.+.  ++.|+++|+.+++.......+.......+++.  +..++++...++
T Consensus        10 ~vv~~~-p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~   86 (266)
T 2iwa_A           10 EVLNEF-PHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKN   86 (266)
T ss_dssp             EEEEEE-ECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCS
T ss_pred             eEEEEE-ECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCC
Confidence            344555 3443  3678999998654444443  57999999999884443322222233455555  556888888899


Q ss_pred             eEEEEeCCCCeeEEeecCC-eeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCC-----CCEEEEEEcCCCCEE
Q 047260          616 EIQYWSINPFLCTHITKGG-TAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHA-----ELVNYICWDTNGDYL  689 (784)
Q Consensus       616 ~I~iwDl~~~~~~~~~~~~-v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~-----~~V~sl~~spdg~~L  689 (784)
                      .+.++|..+.+.+..+... .....++++++.++++..++.|.++|..+.+.+..+.-..     ..++.+.|. +|+++
T Consensus        87 ~v~viD~~t~~v~~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~ly  165 (266)
T 2iwa_A           87 IGFIYDRRTLSNIKNFTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVW  165 (266)
T ss_dssp             EEEEEETTTTEEEEEEECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEE
T ss_pred             EEEEEECCCCcEEEEEECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEE
Confidence            9999999998888777533 3345577788888888888999999999998888876321     246778887 67555


Q ss_pred             EEEe-CCeEEEEeCCCCceEEEeccC-------------CCceEEEEEecCCCEEEEEEC-CCeEEEEECCCC
Q 047260          690 ASVS-QNLVKVWSMASGECIQELSSN-------------GNQFHSCVFHPSYSTLLVVGG-ISSLELWNMAEN  747 (784)
Q Consensus       690 asgs-dd~I~IwDl~t~~~i~~l~~~-------------~~~I~sl~fspdg~~L~s~s~-dg~I~Iwdl~~~  747 (784)
                      +... .+.|.+.|..+++.+..+...             ....+.++|+|+++.+++++. .++|.+.++...
T Consensus       166 vn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          166 ANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             EEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             EecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            5443 459999999999999888642             135689999999987776664 578888887654

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.89  E-value=4.2e-06  Score=100.94  Aligned_cols=266  Identities=9%  Similarity=0.050  Sum_probs=180.1

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecC-------CCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCC
Q 047260          507 NSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPE-------DHKSVVTDVRFRPNSSQLATASVDKSVRLWDAA  579 (784)
Q Consensus       507 ~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~-------~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~  579 (784)
                      ...|.++...++|.+.+ |+.+ -|.+||..+........       -....|.++...++|. |..|+.++-|.+|+..
T Consensus       262 ~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~  338 (795)
T 4a2l_A          262 SNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPI  338 (795)
T ss_dssp             CSBEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGG
T ss_pred             CCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCC
Confidence            45699999998887554 5555 48999988765543321       1235799999998886 6667777789999876


Q ss_pred             CCcceeeecc-----CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEee-----------cCCeeEEEEecC
Q 047260          580 NPNFCSQAYT-----GHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHIT-----------KGGTAQVRFQPR  643 (784)
Q Consensus       580 ~~~~~~~~~~-----~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~-----------~~~v~~v~fsp~  643 (784)
                      +.........     -....|.++...+++.  +..|+.++-|..||..+.......           ...|.++...++
T Consensus       339 ~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~--lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~  416 (795)
T 4a2l_A          339 RNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN--LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEK  416 (795)
T ss_dssp             GGSSEEECCCTTSSSCSCSSEEEEEECTTSC--EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETT
T ss_pred             cccceEEcCCCCCCCCCCCeeEEEEECCCCC--EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCC
Confidence            5432111110     1235699999888775  444677778999998765443321           245677888877


Q ss_pred             CCEEEEEECCCcEEEEECCCCeEEEEEe----CCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEEEecc------
Q 047260          644 IGQLLAAASDKVVSIFDIETDRQTHSLQ----GHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELSS------  713 (784)
Q Consensus       644 ~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~----~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~~l~~------  713 (784)
                      +..|.+|+.++-|.+||..+++......    .....|.++..+++|.+.++.. +.|.+||..+++.......      
T Consensus       417 g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~  495 (795)
T 4a2l_A          417 KSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPV  495 (795)
T ss_dssp             TTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBC
T ss_pred             CCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEcccccccccc
Confidence            7658888888889999998876543322    1345799999999998777665 6688999887754332211      


Q ss_pred             CCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceEEec-------ccCCceEEEEEeCCCCEEEEEECCCcEEEe
Q 047260          714 NGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIA-------AHENIISALAQSPVTGMVASASHDSSVKLW  783 (784)
Q Consensus       714 ~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~~-------~h~~~V~slafspdg~~LaSgs~DG~V~IW  783 (784)
                      ....|.++...+++. |.+++. +.|.+||..+++. .+.       .....|.++...++|.+.++.. +| |..|
T Consensus       496 ~~~~i~~i~~d~~g~-lWigt~-~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~G-l~~~  567 (795)
T 4a2l_A          496 VSKQITTLFRDSHKR-LWIGGE-EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-EG-FYCF  567 (795)
T ss_dssp             CCCCEEEEEECTTCC-EEEEES-SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-SC-EEEE
T ss_pred             CCceEEEEEECCCCC-EEEEeC-CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-CC-ceeE
Confidence            235688898888887 455555 5688999877665 322       2345789999998888666543 34 4444

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.88  E-value=4.1e-06  Score=101.10  Aligned_cols=266  Identities=6%  Similarity=0.039  Sum_probs=177.7

Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeec-CCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeec
Q 047260          510 VTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTP-EDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAY  588 (784)
Q Consensus       510 V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l-~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~  588 (784)
                      |.++...+++.+.+ ++.++-|..|+..+.+..... ..+...|.+|...+++. |..++.++-|.+||..+........
T Consensus       175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~  252 (795)
T 4a2l_A          175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTR-IWVATEGAGLFLINPKTKEIKNYLH  252 (795)
T ss_dssp             CEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTE-EEEEEBSSCEEEEETTTTEEEEECC
T ss_pred             eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCC-EEEEECCCCeEEEeCCCCeEEEeec
Confidence            88898888886555 666555999998776654332 12356789998887776 4445555458889987654221111


Q ss_pred             c------CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEee----------cCCeeEEEEecCCCEEEEEEC
Q 047260          589 T------GHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHIT----------KGGTAQVRFQPRIGQLLAAAS  652 (784)
Q Consensus       589 ~------~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~----------~~~v~~v~fsp~~~~Ll~~s~  652 (784)
                      .      -....|.++...+++. +.+ |..+ -|.+||..+.......          ...|.++...+++ .|.+|+.
T Consensus       253 ~~~~~~~l~~~~i~~i~~d~~g~-lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g-~lWigt~  328 (795)
T 4a2l_A          253 SPSNPKSISSNYIRSLAMDSQNR-LWI-GTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQG-GMWLGTY  328 (795)
T ss_dssp             CTTCTTSCSCSBEEEEEECTTSC-EEE-EESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTS-CEEEEES
T ss_pred             CCCCccccCCCeEEEEEEcCCCC-EEE-EeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCc-CEEEEEC
Confidence            1      1235699999888876 333 4444 5888998776554432          1457778777765 4777888


Q ss_pred             CCcEEEEECCCCeEEEEEeC------CCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEEEecc--------CCCce
Q 047260          653 DKVVSIFDIETDRQTHSLQG------HAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELSS--------NGNQF  718 (784)
Q Consensus       653 Dg~I~IwDl~t~~~i~~l~~------h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~~l~~--------~~~~I  718 (784)
                      ++-|..|+..+.........      ....|.+++.+++|.+.+...++-|..||..++........        ....|
T Consensus       329 ~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v  408 (795)
T 4a2l_A          329 FGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNI  408 (795)
T ss_dssp             SSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCE
T ss_pred             CCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccE
Confidence            88899998766543221110      24569999999999877655555899999887755433211        23568


Q ss_pred             EEEEEecCCCEEEEEECCCeEEEEECCCCceEEecc-----cCCceEEEEEeCCCCEEEEEECCCcEEEe
Q 047260          719 HSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIAA-----HENIISALAQSPVTGMVASASHDSSVKLW  783 (784)
Q Consensus       719 ~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~~~-----h~~~V~slafspdg~~LaSgs~DG~V~IW  783 (784)
                      .+++..+++..|.+|+.++.|.+||..+++...+..     +...|.++...+++.+.+.. .+| |.+|
T Consensus       409 ~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~G-l~~~  476 (795)
T 4a2l_A          409 KAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-LSA-LVRF  476 (795)
T ss_dssp             EEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-SSC-EEEE
T ss_pred             EEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-cCc-eeEE
Confidence            899988888767788887789999998887665432     34579999988888766644 444 5544

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.87  E-value=2.6e-06  Score=88.18  Aligned_cols=216  Identities=9%  Similarity=0.026  Sum_probs=145.4

Q ss_pred             ceEEEEEcCCCCEEEEE-eCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEE-eCCCeEEEEcCCCCcceee
Q 047260          509 KVTCCHFSSDGKLLASS-GHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATA-SVDKSVRLWDAANPNFCSQ  586 (784)
Q Consensus       509 ~V~~l~fspdg~~Lasg-s~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latg-s~Dg~I~IWdl~~~~~~~~  586 (784)
                      .+.+++|++++..|+.+ ..++.|.+++.+.......+.........+++++++..|+.+ ...+.|.+++++... ...
T Consensus        37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~-~~~  115 (267)
T 1npe_A           37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ-RRV  115 (267)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEE
T ss_pred             cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC-EEE
Confidence            57899999976655544 456899999998655444333333578899999976555554 456789999987533 222


Q ss_pred             eccCCCCCeEEEEEcCCCCcEEEEEeC--CCeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEEEEC-CCcEEEEE
Q 047260          587 AYTGHSSPIMSLDFHPKKTDLFCFCDN--DNEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLAAAS-DKVVSIFD  660 (784)
Q Consensus       587 ~~~~h~~~V~sl~~sp~~~~ll~sgs~--dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~~s~-Dg~I~IwD  660 (784)
                      ...........++++|++..++++...  .+.|..++++.........   .....++++++++.|+++.. .+.|.++|
T Consensus       116 ~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~  195 (267)
T 1npe_A          116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLN  195 (267)
T ss_dssp             EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEe
Confidence            222222467899999977767666544  4789888887533222221   34678999999888887776 58999999


Q ss_pred             CCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-C-CeEEEEeCCCCceEEEeccCC-CceEEEEEecCCC
Q 047260          661 IETDRQTHSLQGHAELVNYICWDTNGDYLASVS-Q-NLVKVWSMASGECIQELSSNG-NQFHSCVFHPSYS  728 (784)
Q Consensus       661 l~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgs-d-d~I~IwDl~t~~~i~~l~~~~-~~I~sl~fspdg~  728 (784)
                      .........+.. ......++..  +..|+.+. . +.|.++|..+++.+.++.... .....+++.|++.
T Consensus       196 ~~g~~~~~~~~~-~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          196 PAQPGRRKVLEG-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             TTEEEEEEEEEC-CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred             cCCCceEEEecC-CCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence            986544433433 2334566664  44555554 3 499999999999988886543 2467788888764

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.86  E-value=1.7e-06  Score=92.39  Aligned_cols=236  Identities=11%  Similarity=0.039  Sum_probs=149.1

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCC-------------------CCCCeEEEEEcc-CCCEEEEE
Q 047260          508 SKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPED-------------------HKSVVTDVRFRP-NSSQLATA  567 (784)
Q Consensus       508 ~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~-------------------h~~~It~i~fsp-dg~~Latg  567 (784)
                      ....+++|++++++++++..++.|..||..+++.......                   ....+..|++.+ ++ .|+.+
T Consensus        19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g-~l~v~   97 (322)
T 2fp8_A           19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN-QLYIV   97 (322)
T ss_dssp             SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT-EEEEE
T ss_pred             CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCC-cEEEE
Confidence            3467788999999788888899999999876543321100                   013578999997 55 45666


Q ss_pred             eCCCeEEEEcCCCCcceee--eccC-CCCCeEEEEEcC-CCCcEEEEEeC-----------------CCeEEEEeCCCCe
Q 047260          568 SVDKSVRLWDAANPNFCSQ--AYTG-HSSPIMSLDFHP-KKTDLFCFCDN-----------------DNEIQYWSINPFL  626 (784)
Q Consensus       568 s~Dg~I~IWdl~~~~~~~~--~~~~-h~~~V~sl~~sp-~~~~ll~sgs~-----------------dg~I~iwDl~~~~  626 (784)
                      ...+.|.++|..++.....  ...+ .......+++.+ ++. ++++...                 ++.|..||..+..
T Consensus        98 d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~  176 (322)
T 2fp8_A           98 DCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE  176 (322)
T ss_dssp             ETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE
T ss_pred             ECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCE-EEEECCcccccccccceehcccCCCceEEEEeCCCCE
Confidence            5556688888775431111  1111 123468899999 775 5554322                 3678899987655


Q ss_pred             eEEeec--CCeeEEEEecCCCEEEEEEC-CCcEEEEECCCCe--EEEEEeCCCCCEEEEEEcCCCCEEEEEeC-------
Q 047260          627 CTHITK--GGTAQVRFQPRIGQLLAAAS-DKVVSIFDIETDR--QTHSLQGHAELVNYICWDTNGDYLASVSQ-------  694 (784)
Q Consensus       627 ~~~~~~--~~v~~v~fsp~~~~Ll~~s~-Dg~I~IwDl~t~~--~i~~l~~h~~~V~sl~~spdg~~Lasgsd-------  694 (784)
                      ......  .....++++++++.|+++.. .+.|.+||+....  ....+....+ ...++++++|+++++...       
T Consensus       177 ~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~  255 (322)
T 2fp8_A          177 TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMH  255 (322)
T ss_dssp             EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTT
T ss_pred             EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCccccccc
Confidence            432222  44567999999998877755 6899999987421  1112211223 788999999998777654       


Q ss_pred             ----CeEEEEeCCCCceEEEeccCC----CceEEEEEecCCCEEEEEECCCeEEEEECCCCc
Q 047260          695 ----NLVKVWSMASGECIQELSSNG----NQFHSCVFHPSYSTLLVVGGISSLELWNMAENK  748 (784)
Q Consensus       695 ----d~I~IwDl~t~~~i~~l~~~~----~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~  748 (784)
                          +.|.++|. .++.+..+....    ..+..+++. ++..+++....+.|.++++....
T Consensus       256 ~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~~-~g~L~v~~~~~~~i~~~~~~~~~  315 (322)
T 2fp8_A          256 GRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQEH-DGLLYIGTLFHGSVGILVYDKKG  315 (322)
T ss_dssp             SCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEEE-TTEEEEECSSCSEEEEEEC----
T ss_pred             CCCccEEEEECC-CCCEEEEEECCCCCccccceEEEEe-CCEEEEeecCCCceEEEeccccc
Confidence                36888886 477777775442    346666663 44434444456789999876543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.81  E-value=4.2e-07  Score=105.61  Aligned_cols=260  Identities=11%  Similarity=0.098  Sum_probs=164.9

Q ss_pred             CCEEEEEeC-CCeEEEEEC-CCCceeeecCCCCC-C---------e-EEEEEccCCCEEEEEeCCCeEEEEcCCCCccee
Q 047260          519 GKLLASSGH-DRKVVLWNM-DTLQTESTPEDHKS-V---------V-TDVRFRPNSSQLATASVDKSVRLWDAANPNFCS  585 (784)
Q Consensus       519 g~~Lasgs~-Dg~I~IWd~-~t~~~~~~l~~h~~-~---------I-t~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~  585 (784)
                      +..|++++. ++.|..+|. .+++.+..+..... .         + ..+.+  .+..|++++.|+.|..+|..+++.+-
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W  139 (571)
T 2ad6_A           62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW  139 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence            445666676 889999999 89998877643221 0         0 11222  35678888899999999999987543


Q ss_pred             eeccCC-C--CCeE-EEEEcCCCCcEEEEEeC------CCeEEEEeCCCCeeEEeecCC--e------------------
Q 047260          586 QAYTGH-S--SPIM-SLDFHPKKTDLFCFCDN------DNEIQYWSINPFLCTHITKGG--T------------------  635 (784)
Q Consensus       586 ~~~~~h-~--~~V~-sl~~sp~~~~ll~sgs~------dg~I~iwDl~~~~~~~~~~~~--v------------------  635 (784)
                      ..-... .  ..+. .....  +. .++++..      ++.|+.+|.++++.+..+...  .                  
T Consensus       140 ~~~~~~~~~~~~~~~~P~v~--~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~  216 (571)
T 2ad6_A          140 EVEVCDPKVGSTLTQAPFVA--KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQ  216 (571)
T ss_dssp             EEECCCGGGTCBCCSCCEEE--TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCC
T ss_pred             EecCCCCCccceeccCCEEE--CC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccc
Confidence            322111 0  0111 11111  23 3444443      789999999988877554321  1                  


Q ss_pred             ---------------------eEEEEecCCCEEEEEECC----------------CcEEEEECCCCeEEEEEeCC--C--
Q 047260          636 ---------------------AQVRFQPRIGQLLAAASD----------------KVVSIFDIETDRQTHSLQGH--A--  674 (784)
Q Consensus       636 ---------------------~~v~fsp~~~~Ll~~s~D----------------g~I~IwDl~t~~~i~~l~~h--~--  674 (784)
                                           ..+++.+..+.++++..+                +.|..+|.++++.+..+...  .  
T Consensus       217 ~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~  296 (571)
T 2ad6_A          217 FGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEW  296 (571)
T ss_dssp             SSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSS
T ss_pred             cccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCccc
Confidence                                 135677777788777642                35999999999998887632  1  


Q ss_pred             ------CCEEEEEEcCCCC---EEEEEeC-CeEEEEeCCCCceEEEeccCC-------------Cce-------------
Q 047260          675 ------ELVNYICWDTNGD---YLASVSQ-NLVKVWSMASGECIQELSSNG-------------NQF-------------  718 (784)
Q Consensus       675 ------~~V~sl~~spdg~---~Lasgsd-d~I~IwDl~t~~~i~~l~~~~-------------~~I-------------  718 (784)
                            .++. +....+|+   +++.++. +.++++|..+|+.+..+....             .++             
T Consensus       297 d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~  375 (571)
T 2ad6_A          297 DFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKG  375 (571)
T ss_dssp             CCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCE
T ss_pred             ccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCc
Confidence                  1221 22224674   5556664 499999999999887764321             111             


Q ss_pred             -------------EEEEEecCCCEEEEEE-------------------------------------CCCeEEEEECCCCc
Q 047260          719 -------------HSCVFHPSYSTLLVVG-------------------------------------GISSLELWNMAENK  748 (784)
Q Consensus       719 -------------~sl~fspdg~~L~s~s-------------------------------------~dg~I~Iwdl~~~~  748 (784)
                                   ..++++|+...+++..                                     .+|.|..||+.+++
T Consensus       376 ~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~  455 (571)
T 2ad6_A          376 TNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGK  455 (571)
T ss_dssp             EEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCC
T ss_pred             eEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCC
Confidence                         2357888877777654                                     24789999999998


Q ss_pred             eEEecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          749 SMTIAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       749 ~~~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      .+-...+...+....+...+.+|+.++.||.|++||
T Consensus       456 ~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D  491 (571)
T 2ad6_A          456 AKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALD  491 (571)
T ss_dssp             EEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEE
T ss_pred             EEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEE
Confidence            874333333333333344567788889999999886

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.79  E-value=1.6e-07  Score=107.53  Aligned_cols=228  Identities=13%  Similarity=0.115  Sum_probs=159.8

Q ss_pred             CCCEEEEEeC-CCeEEEEECCCCceeeecCC-CCCCeEEEEE-c-cCCCEEEEEe------------------CCCeEEE
Q 047260          518 DGKLLASSGH-DRKVVLWNMDTLQTESTPED-HKSVVTDVRF-R-PNSSQLATAS------------------VDKSVRL  575 (784)
Q Consensus       518 dg~~Lasgs~-Dg~I~IWd~~t~~~~~~l~~-h~~~It~i~f-s-pdg~~Latgs------------------~Dg~I~I  575 (784)
                      ||++|+++.. ++.|.+.|+++.++...+.- ....+..+++ . |+++++++++                  .++.|.+
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv  179 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  179 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence            8888877665 55799999999998874432 2345888898 4 8999999885                  3467999


Q ss_pred             EcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCC-------------------------------------CeEE
Q 047260          576 WDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDND-------------------------------------NEIQ  618 (784)
Q Consensus       576 Wdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~d-------------------------------------g~I~  618 (784)
                      +|.++.+.......+-  ....++++|++.++++++...                                     +.|.
T Consensus       180 ID~~t~~v~~qI~Vgg--~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~  257 (595)
T 1fwx_A          180 VDADKWEVAWQVLVSG--NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK  257 (595)
T ss_dssp             EETTTTEEEEEEEESS--CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred             EECCCCeEEEEEEeCC--CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence            9999876444433322  356678999999888777543                                     1366


Q ss_pred             EEeCCC--Cee-EEee--cCCeeEEEEecCCCEEEEEEC-CCcEEEEECCCCe------------EEEEEeCCCCCEEEE
Q 047260          619 YWSINP--FLC-THIT--KGGTAQVRFQPRIGQLLAAAS-DKVVSIFDIETDR------------QTHSLQGHAELVNYI  680 (784)
Q Consensus       619 iwDl~~--~~~-~~~~--~~~v~~v~fsp~~~~Ll~~s~-Dg~I~IwDl~t~~------------~i~~l~~h~~~V~sl  680 (784)
                      +.|.++  ... +..+  .....++.++|||+++++++. +..|.++|+.+.+            .+..+. -......+
T Consensus       258 VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~  336 (595)
T 1fwx_A          258 VVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHT  336 (595)
T ss_dssp             EEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEE
T ss_pred             EEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceE
Confidence            666665  322 2222  245677899999999998886 7999999998653            333333 33456889


Q ss_pred             EEcCCCCEEEEEe--CCeEEEEeCCC----------CceEEEeccCCCce-----EEEEEecCCCEEEEEECC--CeE--
Q 047260          681 CWDTNGDYLASVS--QNLVKVWSMAS----------GECIQELSSNGNQF-----HSCVFHPSYSTLLVVGGI--SSL--  739 (784)
Q Consensus       681 ~~spdg~~Lasgs--dd~I~IwDl~t----------~~~i~~l~~~~~~I-----~sl~fspdg~~L~s~s~d--g~I--  739 (784)
                      +|+++| ++++..  ++.|.+||+.+          ...+.++..|-.+-     ..+.++|||++|++...-  .++  
T Consensus       337 aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~  415 (595)
T 1fwx_A          337 AFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLN  415 (595)
T ss_dssp             EECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCC
T ss_pred             EECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCcccccc
Confidence            999999 666555  55999999977          56777777664332     122457999999998763  234  


Q ss_pred             ---------EEEECCCCce
Q 047260          740 ---------ELWNMAENKS  749 (784)
Q Consensus       740 ---------~Iwdl~~~~~  749 (784)
                               .++|+..++.
T Consensus       416 ~gp~~~~~~ql~dis~~~m  434 (595)
T 1fwx_A          416 VGPLKPENDQLIDISGDKM  434 (595)
T ss_dssp             CCSSCCEEEEEEECSSSSC
T ss_pred             CCCCCCCcceEEEcCCCcE
Confidence                     8899966553

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.78  E-value=1.1e-05  Score=97.23  Aligned_cols=270  Identities=10%  Similarity=0.005  Sum_probs=176.5

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecC--------------CCCCCeEEEEEccCCCEEEEEeCCCe
Q 047260          507 NSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPE--------------DHKSVVTDVRFRPNSSQLATASVDKS  572 (784)
Q Consensus       507 ~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~--------------~h~~~It~i~fspdg~~Latgs~Dg~  572 (784)
                      ...|.++...++|. |..|+..+-|.++|..+........              -....|.++...+++. |..|+.++-
T Consensus       257 ~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~G  334 (781)
T 3v9f_A          257 SSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGG  334 (781)
T ss_dssp             CCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSC
T ss_pred             CceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCe
Confidence            46799999988886 4456664568999987654322111              1345799999988775 667777777


Q ss_pred             EEEEcCCCCcceeeec--------cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEe------ecCCeeEE
Q 047260          573 VRLWDAANPNFCSQAY--------TGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHI------TKGGTAQV  638 (784)
Q Consensus       573 I~IWdl~~~~~~~~~~--------~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~------~~~~v~~v  638 (784)
                      |..|+...........        .-....|.++...+++.  +..|+.++-|..||..+......      ....|.++
T Consensus       335 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~--lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i  412 (781)
T 3v9f_A          335 INFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK--LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCS  412 (781)
T ss_dssp             EEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC--EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEE
T ss_pred             EEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC--EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEE
Confidence            9999887654221111        11235689998887765  34456566788898875433321      12456677


Q ss_pred             EEecCCCEEEEEECCCcEEEEECCCCeEEEEEe--CCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEEEeccC--
Q 047260          639 RFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQ--GHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELSSN--  714 (784)
Q Consensus       639 ~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~--~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~~l~~~--  714 (784)
                      ...+++ .|.+++.++-|..+|..+++......  .....|.++..+++|.+.++.. +.|.+||..+++........  
T Consensus       413 ~~d~~g-~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~  490 (781)
T 3v9f_A          413 LKDSEG-NLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHYDTSNS  490 (781)
T ss_dssp             EECTTS-CEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCCEEECTTTS
T ss_pred             EECCCC-CEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEEecccCccc
Confidence            766654 56778877789999988775433221  1346799999988887666554 77999998877654333222  


Q ss_pred             ---CCceEEEEEecCCCEEEEEECCCeEEEEECCCCceEEecc----cCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          715 ---GNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIAA----HENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       715 ---~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~~~----h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                         ...|.++...+++. |.+++.++.|..||..+++...+..    ....|.++...+++.+.++. .+|.|..||
T Consensus       491 ~~~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d  565 (781)
T 3v9f_A          491 QLLENFVRSIAQDSEGR-FWIGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVCFPS  565 (781)
T ss_dssp             SCSCSCEEEEEECTTCC-EEEEESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEEESC
T ss_pred             ccccceeEEEEEcCCCC-EEEEEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceEEEC
Confidence               35788898888886 5666665558889988776554432    24568999988888766654 466546654

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.78  E-value=1.1e-06  Score=90.90  Aligned_cols=191  Identities=14%  Similarity=0.143  Sum_probs=137.7

Q ss_pred             eeeecCCCCCC--eEEEEEccCCCEEEEEeCCC--eEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCe
Q 047260          541 TESTPEDHKSV--VTDVRFRPNSSQLATASVDK--SVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNE  616 (784)
Q Consensus       541 ~~~~l~~h~~~--It~i~fspdg~~Latgs~Dg--~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~  616 (784)
                      .+.++ .|...  ...+.|+ ++.++.+.+.+|  .|+++|+++++........  ......-..+++..+++....++.
T Consensus        33 vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~--~~~FgeGit~~g~~ly~ltw~~~~  108 (262)
T 3nol_A           33 IVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG--KRYFGEGISDWKDKIVGLTWKNGL  108 (262)
T ss_dssp             EEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC--TTCCEEEEEEETTEEEEEESSSSE
T ss_pred             EEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecC--CccceeEEEEeCCEEEEEEeeCCE
Confidence            44555 34433  4788898 676667777766  8999999998844433222  233332233345667777778999


Q ss_pred             EEEEeCCCCeeEEeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCC--C---CCEEEEEEcCCCCEEEE
Q 047260          617 IQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGH--A---ELVNYICWDTNGDYLAS  691 (784)
Q Consensus       617 I~iwDl~~~~~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h--~---~~V~sl~~spdg~~Las  691 (784)
                      +.+||..+.+.+..+........+.+++..|+.+..++.|.++|..+.+.+..+...  .   ..++.+.|. +|++++.
T Consensus       109 v~v~D~~t~~~~~ti~~~~eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan  187 (262)
T 3nol_A          109 GFVWNIRNLRQVRSFNYDGEGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFAN  187 (262)
T ss_dssp             EEEEETTTCCEEEEEECSSCCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEE
T ss_pred             EEEEECccCcEEEEEECCCCceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEE
Confidence            999999999988877754454556678888888877889999999999888887642  1   345567776 6765555


Q ss_pred             Ee-CCeEEEEeCCCCceEEEeccC------------CCceEEEEEecCCCEEEEEECC
Q 047260          692 VS-QNLVKVWSMASGECIQELSSN------------GNQFHSCVFHPSYSTLLVVGGI  736 (784)
Q Consensus       692 gs-dd~I~IwDl~t~~~i~~l~~~------------~~~I~sl~fspdg~~L~s~s~d  736 (784)
                      .- ++.|.+.|..+++.+..+...            ....+.++|+|+++.|++.+..
T Consensus       188 ~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~  245 (262)
T 3nol_A          188 VWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL  245 (262)
T ss_dssp             ETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred             EccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence            53 459999999999999888642            2356899999999988888875

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.74  E-value=1.4e-05  Score=84.77  Aligned_cols=234  Identities=9%  Similarity=0.023  Sum_probs=145.6

Q ss_pred             ceeEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCC-C-eE
Q 047260          496 TFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVD-K-SV  573 (784)
Q Consensus       496 ~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~D-g-~I  573 (784)
                      ....+..+... .....++|+++++++++...++.|..||.+.. ....+ .....+..+++.++++++++.... + .|
T Consensus        21 ~~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~-~~~~~p~gia~~~dG~l~vad~~~~~~~v   97 (306)
T 2p4o_A           21 PAKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHA-TVEGKVSGLAFTSNGDLVATGWNADSIPV   97 (306)
T ss_dssp             CEEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEE-ECSSEEEEEEECTTSCEEEEEECTTSCEE
T ss_pred             CceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEE-eCCCCceeEEEcCCCcEEEEeccCCcceE
Confidence            34455555433 56889999999997777667899999998753 33333 233568899999999866655432 2 46


Q ss_pred             EEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe--eEEe--------e-c--CCeeEEEE
Q 047260          574 RLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFL--CTHI--------T-K--GGTAQVRF  640 (784)
Q Consensus       574 ~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~--~~~~--------~-~--~~v~~v~f  640 (784)
                      ..+|..+++...............++..+. ..++++...++.|+++|.....  ....        . .  .....+  
T Consensus        98 ~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~-~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--  174 (306)
T 2p4o_A           98 VSLVKSDGTVETLLTLPDAIFLNGITPLSD-TQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--  174 (306)
T ss_dssp             EEEECTTSCEEEEEECTTCSCEEEEEESSS-SEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--
T ss_pred             EEEcCCCCeEEEEEeCCCccccCcccccCC-CcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--
Confidence            667766655321111112223344554443 3355555468899999987542  2110        0 0  123344  


Q ss_pred             ecCCCEEEEEEC-CCcEEEEECCC-CeE--EEEEeCCCCCEEEEEEcCCCCEEEEEeC-CeEEEEeCCCCceEE--Eecc
Q 047260          641 QPRIGQLLAAAS-DKVVSIFDIET-DRQ--THSLQGHAELVNYICWDTNGDYLASVSQ-NLVKVWSMASGECIQ--ELSS  713 (784)
Q Consensus       641 sp~~~~Ll~~s~-Dg~I~IwDl~t-~~~--i~~l~~h~~~V~sl~~spdg~~Lasgsd-d~I~IwDl~t~~~i~--~l~~  713 (784)
                      +++++.|+++.. .+.|.+||+.. ++.  ...+.. ......++++++|+++++... +.|.++|.. ++...  .+..
T Consensus       175 s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~  252 (306)
T 2p4o_A          175 KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQ  252 (306)
T ss_dssp             EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGG
T ss_pred             CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeeccc
Confidence            888888877776 68999999874 321  111211 123456889999987666554 489999975 65532  3444


Q ss_pred             CCCceEEEEEe---cCCCEEEEEECCC
Q 047260          714 NGNQFHSCVFH---PSYSTLLVVGGIS  737 (784)
Q Consensus       714 ~~~~I~sl~fs---pdg~~L~s~s~dg  737 (784)
                      ......+|+|.   |++..|++++..+
T Consensus       253 ~~~~p~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          253 GVIGSTAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             TCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             ccCCceEEEEecccCCCCEEEEECCCC
Confidence            44568999998   8888888777653

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.73  E-value=2.9e-06  Score=98.90  Aligned_cols=262  Identities=8%  Similarity=0.059  Sum_probs=163.9

Q ss_pred             CCEEEEEeC-CCeEEEEEC-CCCceeeecCCCCCC-----------eEEEEEccCCCE----EEEEeCCCeEEEEcCCCC
Q 047260          519 GKLLASSGH-DRKVVLWNM-DTLQTESTPEDHKSV-----------VTDVRFRPNSSQ----LATASVDKSVRLWDAANP  581 (784)
Q Consensus       519 g~~Lasgs~-Dg~I~IWd~-~t~~~~~~l~~h~~~-----------It~i~fspdg~~----Latgs~Dg~I~IWdl~~~  581 (784)
                      +..|++++. ++.|..+|. .+++.+..+......           ...+++.|.+..    |++++.|+.|..+|.+++
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG  141 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG  141 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence            446666777 888999999 899988777533211           123455443434    888889999999999998


Q ss_pred             cceeeeccCC-C--CCeE-EEEEcCCCCcEEEEEe------CCCeEEEEeCCCCeeEEeecCC--e--------------
Q 047260          582 NFCSQAYTGH-S--SPIM-SLDFHPKKTDLFCFCD------NDNEIQYWSINPFLCTHITKGG--T--------------  635 (784)
Q Consensus       582 ~~~~~~~~~h-~--~~V~-sl~~sp~~~~ll~sgs------~dg~I~iwDl~~~~~~~~~~~~--v--------------  635 (784)
                      +.+-..-... .  ..+. ...+. + . .++++.      .++.|+.+|.++++.+..+...  .              
T Consensus       142 ~~~W~~~~~~~~~~~~~~ssP~v~-~-g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~  218 (599)
T 1w6s_A          142 ETVWKVENSDIKVGSTLTIAPYVV-K-D-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNP  218 (599)
T ss_dssp             CEEEEEECCCGGGTCBCCSCCEEE-T-T-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCG
T ss_pred             CEEEeecCCCCCccceeecCCEEE-C-C-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccc
Confidence            8543322111 0  0111 11111 2 2 344443      3799999999998877554421  1              


Q ss_pred             -------------------------eEEEEecCCCEEEEEECC----------------CcEEEEECCCCeEEEEEeCCC
Q 047260          636 -------------------------AQVRFQPRIGQLLAAASD----------------KVVSIFDIETDRQTHSLQGHA  674 (784)
Q Consensus       636 -------------------------~~v~fsp~~~~Ll~~s~D----------------g~I~IwDl~t~~~i~~l~~h~  674 (784)
                                               ..+++.+..+.++++..+                +.|..+|.++++.+..+....
T Consensus       219 ~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~  298 (599)
T 1w6s_A          219 HYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTP  298 (599)
T ss_dssp             GGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESST
T ss_pred             cccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCC
Confidence                                     134677788888888765                389999999999988876422


Q ss_pred             C----------CEEEEEEc-CCC---CEEEEEeC-CeEEEEeCCCCceEEEeccCC-------------Cce--------
Q 047260          675 E----------LVNYICWD-TNG---DYLASVSQ-NLVKVWSMASGECIQELSSNG-------------NQF--------  718 (784)
Q Consensus       675 ~----------~V~sl~~s-pdg---~~Lasgsd-d~I~IwDl~t~~~i~~l~~~~-------------~~I--------  718 (784)
                      .          ++. +... .+|   ..++.++. +.++++|.++|+.+.......             .++        
T Consensus       299 ~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~  377 (599)
T 1w6s_A          299 HDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTR  377 (599)
T ss_dssp             TCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCC
T ss_pred             CccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCC
Confidence            1          121 2222 567   45665654 499999999999887664221             111        


Q ss_pred             ------------------EEEEEecCCCEEEEEE---------------------------------------CCCeEEE
Q 047260          719 ------------------HSCVFHPSYSTLLVVG---------------------------------------GISSLEL  741 (784)
Q Consensus       719 ------------------~sl~fspdg~~L~s~s---------------------------------------~dg~I~I  741 (784)
                                        ..++++|+...+++..                                       ..|.|..
T Consensus       378 ~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A  457 (599)
T 1w6s_A          378 MDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKA  457 (599)
T ss_dssp             TTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEE
T ss_pred             CCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEE
Confidence                              2356777666555431                                       3478999


Q ss_pred             EECCCCceEEecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          742 WNMAENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       742 wdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      ||+.+++.+-...+..++..-.....+.+|+.++.||.|+.||
T Consensus       458 ~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D  500 (599)
T 1w6s_A          458 YNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARD  500 (599)
T ss_dssp             ECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEE
T ss_pred             EECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEE
Confidence            9999998873332222222212233467888899999998876

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.72  E-value=1.1e-06  Score=90.83  Aligned_cols=188  Identities=13%  Similarity=0.133  Sum_probs=136.9

Q ss_pred             eeeecCCCC--CCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEE--EEEcCCCCcEEEEEeCCCe
Q 047260          541 TESTPEDHK--SVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMS--LDFHPKKTDLFCFCDNDNE  616 (784)
Q Consensus       541 ~~~~l~~h~--~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~s--l~~sp~~~~ll~sgs~dg~  616 (784)
                      .+.++ .|.  .....+.|+ ++.++++.+.+|.|+++|+++++..... ..  .....  +++  ++..+++....++.
T Consensus        45 Vv~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~--~~~FgeGit~--~g~~Ly~ltw~~~~  117 (268)
T 3nok_A           45 IIREY-PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RL--GNIFAEGLAS--DGERLYQLTWTEGL  117 (268)
T ss_dssp             EEEEE-ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC--TTCCEEEEEE--CSSCEEEEESSSCE
T ss_pred             EEEEE-cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC--CCcceeEEEE--eCCEEEEEEccCCE
Confidence            34444 344  334678887 4566777788899999999998855444 32  23333  554  45668888888999


Q ss_pred             EEEEeCCCCeeEEeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCC-----CCEEEEEEcCCCCEEEE
Q 047260          617 IQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHA-----ELVNYICWDTNGDYLAS  691 (784)
Q Consensus       617 I~iwDl~~~~~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~-----~~V~sl~~spdg~~Las  691 (784)
                      +.+||..+.+.+..+........+.+++..|+++..++.|.++|..+.+.+..+....     ..++.+.|. +|++++.
T Consensus       118 v~V~D~~Tl~~~~ti~~~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyan  196 (268)
T 3nok_A          118 LFTWSGMPPQRERTTRYSGEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYAN  196 (268)
T ss_dssp             EEEEETTTTEEEEEEECSSCCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEE
T ss_pred             EEEEECCcCcEEEEEeCCCceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEE
Confidence            9999999999888777444334455678888888889999999999999888876421     245677876 7765555


Q ss_pred             Ee-CCeEEEEeCCCCceEEEeccC-------------CCceEEEEEecCCCEEEEEECC
Q 047260          692 VS-QNLVKVWSMASGECIQELSSN-------------GNQFHSCVFHPSYSTLLVVGGI  736 (784)
Q Consensus       692 gs-dd~I~IwDl~t~~~i~~l~~~-------------~~~I~sl~fspdg~~L~s~s~d  736 (784)
                      .. .+.|.+.|..+++.+..+...             ....+.++|+|+++.|++.+..
T Consensus       197 vw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~  255 (268)
T 3nok_A          197 IWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKL  255 (268)
T ss_dssp             ETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETT
T ss_pred             ECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCC
Confidence            53 459999999999998887532             2356899999998888777754

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.72  E-value=1.3e-06  Score=103.51  Aligned_cols=253  Identities=9%  Similarity=0.096  Sum_probs=158.3

Q ss_pred             CCEEEEEeCCCeEEEEECCCCceeeecCCCC----CCeEE-EEEccCCCEEEEEeC------CCeEEEEcCCCCcceeee
Q 047260          519 GKLLASSGHDRKVVLWNMDTLQTESTPEDHK----SVVTD-VRFRPNSSQLATASV------DKSVRLWDAANPNFCSQA  587 (784)
Q Consensus       519 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~----~~It~-i~fspdg~~Latgs~------Dg~I~IWdl~~~~~~~~~  587 (784)
                      +..|++++.|+.|..+|..+++.+..+....    ..+.+ ..+. ++ .+++++.      +|.|..+|.++++..-..
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~  194 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVV-KG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRF  194 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEE-TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEE-CC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEe
Confidence            4578888899999999999999987765421    11111 1111 34 4555543      589999999998743322


Q ss_pred             cc--CCC----------------------------CCeEEEEEcCCCCcEEEEEeCCC-------------------eEE
Q 047260          588 YT--GHS----------------------------SPIMSLDFHPKKTDLFCFCDNDN-------------------EIQ  618 (784)
Q Consensus       588 ~~--~h~----------------------------~~V~sl~~sp~~~~ll~sgs~dg-------------------~I~  618 (784)
                      ..  +..                            .....+++.++.. +++.+..++                   .|.
T Consensus       195 ~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~  273 (668)
T 1kv9_A          195 YTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELD-LLYVGTGNGSPWNREVRSPGGGDNLYLSSIL  273 (668)
T ss_dssp             ESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred             cccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence            11  000                            1112467777765 555565554                   499


Q ss_pred             EEeCCCCeeEEeecC------------CeeEEEEecCCC---EEEEEECCCcEEEEECCCCeEEEEEeCCCC--------
Q 047260          619 YWSINPFLCTHITKG------------GTAQVRFQPRIG---QLLAAASDKVVSIFDIETDRQTHSLQGHAE--------  675 (784)
Q Consensus       619 iwDl~~~~~~~~~~~------------~v~~v~fsp~~~---~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~--------  675 (784)
                      .+|.++++.+..+..            +.....+..+++   .+++++.+|.|+++|.++++.+..+.....        
T Consensus       274 AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~  353 (668)
T 1kv9_A          274 AIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDL  353 (668)
T ss_dssp             EECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECT
T ss_pred             EEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccccccc
Confidence            999999888766542            112222334554   577888899999999999998854432110        


Q ss_pred             ----CE------------------------EEEEEcCCCCEEEEEe----------------------------------
Q 047260          676 ----LV------------------------NYICWDTNGDYLASVS----------------------------------  693 (784)
Q Consensus       676 ----~V------------------------~sl~~spdg~~Lasgs----------------------------------  693 (784)
                          ++                        ..++++|+..++++..                                  
T Consensus       354 ~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~  433 (668)
T 1kv9_A          354 ATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPA  433 (668)
T ss_dssp             TTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCG
T ss_pred             ccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCC
Confidence                00                        1156777766655421                                  


Q ss_pred             ---CCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceEE-ecccCCc-eEEEEEeCCC
Q 047260          694 ---QNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMT-IAAHENI-ISALAQSPVT  768 (784)
Q Consensus       694 ---dd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~-~~~h~~~-V~slafspdg  768 (784)
                         ++.|..||+.+++.+.++.... ......+...+..+++++.|+.|++||..+++.+. +....+. -.-+.+..+|
T Consensus       434 ~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G  512 (668)
T 1kv9_A          434 AVVSGALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAG  512 (668)
T ss_dssp             GGCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETT
T ss_pred             CCccceEEEEeCCCCcEEEEccCCC-CCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECC
Confidence               1479999999999988876543 33334555577789999999999999999999883 3222211 1223344566


Q ss_pred             C-EEEEEE
Q 047260          769 G-MVASAS  775 (784)
Q Consensus       769 ~-~LaSgs  775 (784)
                      + +++.++
T Consensus       513 ~~yva~~~  520 (668)
T 1kv9_A          513 RQYVAIMA  520 (668)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEe
Confidence            6 444443

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.71  E-value=3.7e-06  Score=87.60  Aligned_cols=201  Identities=8%  Similarity=0.043  Sum_probs=137.2

Q ss_pred             cceeEEeEeecCCCc--eEEEEEcCCCCEEEEEeC--CCeEEEEECCCCceeeecCCCC-CCeEEEEEccCCCEEEEEe-
Q 047260          495 FTFCEVGCIRSRNSK--VTCCHFSSDGKLLASSGH--DRKVVLWNMDTLQTESTPEDHK-SVVTDVRFRPNSSQLATAS-  568 (784)
Q Consensus       495 ~~~~~i~~l~~H~~~--V~~l~fspdg~~Lasgs~--Dg~I~IWd~~t~~~~~~l~~h~-~~It~i~fspdg~~Latgs-  568 (784)
                      ..+..+.++. |...  ...+.|++|+.++++.+.  ++.|.++|+.+++.+..+.-.. .....+++.  ++.|+.+. 
T Consensus         7 ~~~~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~   83 (266)
T 2iwa_A            7 YIVEVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVW   83 (266)
T ss_dssp             EEEEEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEET
T ss_pred             cCceEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEe
Confidence            4555666664 5543  689999998755555443  5799999999999988864222 222345554  44555544 


Q ss_pred             CCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecC--------CeeEEEE
Q 047260          569 VDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKG--------GTAQVRF  640 (784)
Q Consensus       569 ~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~--------~v~~v~f  640 (784)
                      .++.|.++|..+.+. ...+......-..  +++++..++++. .++.|.++|..+.+.+....-        ....+.|
T Consensus        84 ~~~~v~viD~~t~~v-~~~i~~g~~~g~g--lt~Dg~~l~vs~-gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~  159 (266)
T 2iwa_A           84 LKNIGFIYDRRTLSN-IKNFTHQMKDGWG--LATDGKILYGSD-GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEY  159 (266)
T ss_dssp             TCSEEEEEETTTTEE-EEEEECCSSSCCE--EEECSSSEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE
T ss_pred             cCCEEEEEECCCCcE-EEEEECCCCCeEE--EEECCCEEEEEC-CCCeEEEEECCCCcEEEEEEECCCCcccccceeEEE
Confidence            578999999998764 3334321122233  455777777655 688999999998776665542        2456777


Q ss_pred             ecCCCEEEEEEC-CCcEEEEECCCCeEEEEEeCC-------------CCCEEEEEEcCCCCEEEEEeCC--eEEEEeCCC
Q 047260          641 QPRIGQLLAAAS-DKVVSIFDIETDRQTHSLQGH-------------AELVNYICWDTNGDYLASVSQN--LVKVWSMAS  704 (784)
Q Consensus       641 sp~~~~Ll~~s~-Dg~I~IwDl~t~~~i~~l~~h-------------~~~V~sl~~spdg~~Lasgsdd--~I~IwDl~t  704 (784)
                      . ++ .+++... ++.|.+.|..+++.+..+...             ....+.|+|+|+++.|++++..  .|.+.++..
T Consensus       160 ~-dg-~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~  237 (266)
T 2iwa_A          160 I-NG-EVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL  237 (266)
T ss_dssp             E-TT-EEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred             E-CC-EEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence            7 54 6666664 799999999999998888632             1356899999999877776643  787777654

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.67  E-value=6.9e-07  Score=105.57  Aligned_cols=264  Identities=12%  Similarity=0.091  Sum_probs=154.8

Q ss_pred             EEEEcC-CCCEEEEEeCCC-----------eEEEEECCCCceee--ec-CCCCCCeEEEEEccCCCEEEEEeC-CCeEEE
Q 047260          512 CCHFSS-DGKLLASSGHDR-----------KVVLWNMDTLQTES--TP-EDHKSVVTDVRFRPNSSQLATASV-DKSVRL  575 (784)
Q Consensus       512 ~l~fsp-dg~~Lasgs~Dg-----------~I~IWd~~t~~~~~--~l-~~h~~~It~i~fspdg~~Latgs~-Dg~I~I  575 (784)
                      ++++.+ ++++++.|+.+.           .+.+||..+.+...  .+ ..+.....++++..+++++++|+. +..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            556677 888888887543           58899988765322  22 223444556788889999999984 468999


Q ss_pred             EcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEe-CC-----CeEEEEeCCCCeeEEeec-------CCeeEEEEec
Q 047260          576 WDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCD-ND-----NEIQYWSINPFLCTHITK-------GGTAQVRFQP  642 (784)
Q Consensus       576 Wdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs-~d-----g~I~iwDl~~~~~~~~~~-------~~v~~v~fsp  642 (784)
                      ||..+.......-......-.++++.+++. +++.|+ .+     ..+.+||..+........       .......+..
T Consensus       270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~-iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~  348 (656)
T 1k3i_A          270 YDSSSDSWIPGPDMQVARGYQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS  348 (656)
T ss_dssp             EEGGGTEEEECCCCSSCCSSCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTT
T ss_pred             ecCcCCceeECCCCCccccccceEEecCCe-EEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeec
Confidence            999876532211111111123445556666 666666 34     568999998765444311       0000011223


Q ss_pred             CCCEEEEEECC---------CcEEEEECCCCeEEEEEeCCC---------CCEEEEEEcC-CCCEEEEEeC---------
Q 047260          643 RIGQLLAAASD---------KVVSIFDIETDRQTHSLQGHA---------ELVNYICWDT-NGDYLASVSQ---------  694 (784)
Q Consensus       643 ~~~~Ll~~s~D---------g~I~IwDl~t~~~i~~l~~h~---------~~V~sl~~sp-dg~~Lasgsd---------  694 (784)
                      ++..++.++.+         ..+..||..+.........+.         ..-.++.|.. ++++++.|+.         
T Consensus       349 ~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~  428 (656)
T 1k3i_A          349 DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDAT  428 (656)
T ss_dssp             TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCC
T ss_pred             CCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcC
Confidence            34444555443         456788888765443322111         1234455543 6777777652         


Q ss_pred             C---eEEEEeCCCCceEEEe--ccCCC-ceEEEEEecCCCEEEEEECC-----------CeEEEEECCCCceEEecc---
Q 047260          695 N---LVKVWSMASGECIQEL--SSNGN-QFHSCVFHPSYSTLLVVGGI-----------SSLELWNMAENKSMTIAA---  754 (784)
Q Consensus       695 d---~I~IwDl~t~~~i~~l--~~~~~-~I~sl~fspdg~~L~s~s~d-----------g~I~Iwdl~~~~~~~~~~---  754 (784)
                      +   .|.+||..+.......  ..+.. .-.++++.|+++.+++++.+           ..+.+||..+++...+..   
T Consensus       429 ~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~  508 (656)
T 1k3i_A          429 TNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSI  508 (656)
T ss_dssp             CCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSS
T ss_pred             CcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCC
Confidence            1   5788888876654433  11222 23455777899988888754           468999998876543321   


Q ss_pred             cCCceEEEEEeCCCCEEEEEEC
Q 047260          755 HENIISALAQSPVTGMVASASH  776 (784)
Q Consensus       755 h~~~V~slafspdg~~LaSgs~  776 (784)
                      ......+..+.+++++++.|+.
T Consensus       509 ~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          509 VRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             CCCTTEEEEECTTSCEEEEECC
T ss_pred             ccccccHhhcCCCcEEEecCCC
Confidence            1222334556789999999885

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.66  E-value=5.4e-06  Score=84.87  Aligned_cols=192  Identities=15%  Similarity=0.127  Sum_probs=136.3

Q ss_pred             ceeeecCCCC--CCeEEEEEccCCCEEEEEeCC--CeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCC
Q 047260          540 QTESTPEDHK--SVVTDVRFRPNSSQLATASVD--KSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDN  615 (784)
Q Consensus       540 ~~~~~l~~h~--~~It~i~fspdg~~Latgs~D--g~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg  615 (784)
                      +.+.++ .|.  .....+.|+. +.++.+.+.+  ..|+++|+.+++.....-......-..+++  .+..++.....++
T Consensus        10 ~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~--~~~~ly~ltw~~~   85 (243)
T 3mbr_X           10 RVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVA--WRDRLIQLTWRNH   85 (243)
T ss_dssp             EEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEESSSS
T ss_pred             EEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEE--eCCEEEEEEeeCC
Confidence            344555 454  3466899986 5555665654  489999999988443332221111233444  3566788788899


Q ss_pred             eEEEEeCCCCeeEEeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCC-----CCEEEEEEcCCCCEEE
Q 047260          616 EIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHA-----ELVNYICWDTNGDYLA  690 (784)
Q Consensus       616 ~I~iwDl~~~~~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~-----~~V~sl~~spdg~~La  690 (784)
                      .+.+||..+.+.+..+........+.+++..|+++..++.|.++|..+.+.+..+....     ..++.+.|. +|++++
T Consensus        86 ~v~v~D~~tl~~~~ti~~~~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lya  164 (243)
T 3mbr_X           86 EGFVYDLATLTPRARFRYPGEGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLA  164 (243)
T ss_dssp             EEEEEETTTTEEEEEEECSSCCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEE
T ss_pred             EEEEEECCcCcEEEEEeCCCCceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEE
Confidence            99999999999888877444445556788888888889999999999998888876422     355667775 666555


Q ss_pred             EEe-CCeEEEEeCCCCceEEEeccC-------------CCceEEEEEecCCCEEEEEECC
Q 047260          691 SVS-QNLVKVWSMASGECIQELSSN-------------GNQFHSCVFHPSYSTLLVVGGI  736 (784)
Q Consensus       691 sgs-dd~I~IwDl~t~~~i~~l~~~-------------~~~I~sl~fspdg~~L~s~s~d  736 (784)
                      ..- .+.|.+.|..+++.+..+...             ....+.++++|+++.|++.+..
T Consensus       165 nvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~  224 (243)
T 3mbr_X          165 NVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR  224 (243)
T ss_dssp             EETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred             EECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence            553 559999999999999887622             2356899999998888888764

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.65  E-value=5.9e-06  Score=88.14  Aligned_cols=229  Identities=10%  Similarity=0.043  Sum_probs=141.2

Q ss_pred             CeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeecc------------------CCCCCeEEEEEcCCCCcEEEEEe
Q 047260          551 VVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYT------------------GHSSPIMSLDFHPKKTDLFCFCD  612 (784)
Q Consensus       551 ~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~------------------~h~~~V~sl~~sp~~~~ll~sgs  612 (784)
                      ...+++|.+++++++++..++.|..||..+.........                  .....+..+++.+++..+++ ++
T Consensus        20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v-~d   98 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYI-VD   98 (322)
T ss_dssp             CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEE-EE
T ss_pred             CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEE-EE
Confidence            456788999998888888899999999876542211100                  00135788999973333444 44


Q ss_pred             CCCeEEEEeCCCCeeEEee---c----CCeeEEEEec-CCCEEEEEEC-----------------CCcEEEEECCCCeEE
Q 047260          613 NDNEIQYWSINPFLCTHIT---K----GGTAQVRFQP-RIGQLLAAAS-----------------DKVVSIFDIETDRQT  667 (784)
Q Consensus       613 ~dg~I~iwDl~~~~~~~~~---~----~~v~~v~fsp-~~~~Ll~~s~-----------------Dg~I~IwDl~t~~~i  667 (784)
                      ..+.|..+|..+.......   .    .....+++.+ ++..+++...                 ++.|..||..+++..
T Consensus        99 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~  178 (322)
T 2fp8_A           99 CYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETT  178 (322)
T ss_dssp             TTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEE
T ss_pred             CCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEE
Confidence            4556888887754322211   1    2357789999 7765554322                 367899998777643


Q ss_pred             EEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEeCCCCc--eEEEeccCCCceEEEEEecCCCEEEEEEC--------
Q 047260          668 HSLQGHAELVNYICWDTNGDYLASVS--QNLVKVWSMASGE--CIQELSSNGNQFHSCVFHPSYSTLLVVGG--------  735 (784)
Q Consensus       668 ~~l~~h~~~V~sl~~spdg~~Lasgs--dd~I~IwDl~t~~--~i~~l~~~~~~I~sl~fspdg~~L~s~s~--------  735 (784)
                      ..... ......|+|++++++|+++.  .+.|.+|++....  ....+..... ...+++.++|.++++...        
T Consensus       179 ~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~  256 (322)
T 2fp8_A          179 LLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHG  256 (322)
T ss_dssp             EEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTS
T ss_pred             EeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccC
Confidence            33221 22345789999999776664  3499999987521  1122211223 788999999986666544        


Q ss_pred             --CCeEEEEECCCCceE-Eeccc----CCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          736 --ISSLELWNMAENKSM-TIAAH----ENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       736 --dg~I~Iwdl~~~~~~-~~~~h----~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                        .+.|..+|.. ++.+ .+...    ...++++++. ++.++++...++.|.+++
T Consensus       257 ~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~~-~g~L~v~~~~~~~i~~~~  310 (322)
T 2fp8_A          257 RVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQEH-DGLLYIGTLFHGSVGILV  310 (322)
T ss_dssp             CEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEEE-TTEEEEECSSCSEEEEEE
T ss_pred             CCccEEEEECCC-CCEEEEEECCCCCccccceEEEEe-CCEEEEeecCCCceEEEe
Confidence              4678888875 4444 33322    2346777763 555555555667777653

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.63  E-value=3.2e-05  Score=93.05  Aligned_cols=268  Identities=10%  Similarity=0.054  Sum_probs=171.6

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCC-------CCCCeEEEEEccCCCEEEEEeCCCeEEEEcCC
Q 047260          507 NSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPED-------HKSVVTDVRFRPNSSQLATASVDKSVRLWDAA  579 (784)
Q Consensus       507 ~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~-------h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~  579 (784)
                      ...|.++...++|.+.+ |+.+ -|.+||..+.+.......       ....|.+|...+++. |..|+..+-|.++|..
T Consensus       210 ~~~i~~i~~d~~g~lwi-gt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~  286 (781)
T 3v9f_A          210 GNDVRCIYKDTNGNIWI-GTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQ  286 (781)
T ss_dssp             CSSEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETT
T ss_pred             CCceeEEEEcCCCCEEE-EeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCC
Confidence            35699999988887555 4545 599999876654332211       245699999887775 5566665568888887


Q ss_pred             CCcceeeec-------------cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEe------------ecCC
Q 047260          580 NPNFCSQAY-------------TGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHI------------TKGG  634 (784)
Q Consensus       580 ~~~~~~~~~-------------~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~------------~~~~  634 (784)
                      +........             .-....|.++....++.  +-.|..++-|..++.........            ....
T Consensus       287 ~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~--lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  364 (781)
T 3v9f_A          287 QNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN--IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKV  364 (781)
T ss_dssp             CC---------CEEECBCSSTTSBSSSCEEEEEECSSCC--EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSC
T ss_pred             CCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC--EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcc
Confidence            654211110             11345789999888775  44566677788888875433222            1134


Q ss_pred             eeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEE---eCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEEEe
Q 047260          635 TAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSL---QGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQEL  711 (784)
Q Consensus       635 v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l---~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~~l  711 (784)
                      |.++...+++ .|.+|+.++-|.+||..++......   ......|.+++.+++|.+.+....+.|.++|..+++.....
T Consensus       365 v~~i~~d~~g-~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~  443 (781)
T 3v9f_A          365 VSSVCDDGQG-KLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIE  443 (781)
T ss_dssp             EEEEEECTTS-CEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECC
T ss_pred             eEEEEEcCCC-CEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEec
Confidence            6777776664 5777787778999998765432211   12346799999988888777544458999998877543322


Q ss_pred             c--cCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceEEecc-c-----CCceEEEEEeCCCCEEEEEECCCcEEEe
Q 047260          712 S--SNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIAA-H-----ENIISALAQSPVTGMVASASHDSSVKLW  783 (784)
Q Consensus       712 ~--~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~~~-h-----~~~V~slafspdg~~LaSgs~DG~V~IW  783 (784)
                      .  .....|.++...+++. |.+++. +.|.+||..+++...+.. .     ...|.+++..+++.+.+....+| |..|
T Consensus       444 ~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~  520 (781)
T 3v9f_A          444 LEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIY  520 (781)
T ss_dssp             STTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEE
T ss_pred             cCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEE
Confidence            1  2346788888887775 666666 569999988776543322 1     36799999998887666443344 4444

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.62  E-value=4.7e-05  Score=82.57  Aligned_cols=237  Identities=8%  Similarity=0.011  Sum_probs=153.2

Q ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEE-eCCCeEEEEcCCCCcce
Q 047260          506 RNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATA-SVDKSVRLWDAANPNFC  584 (784)
Q Consensus       506 H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latg-s~Dg~I~IWdl~~~~~~  584 (784)
                      +.+..+|.+..++. +|+.+. ...|+..++........+. ....+..++|++....|+.+ ...+.|..+++.... .
T Consensus        32 ~~d~~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~-~  107 (349)
T 3v64_C           32 RPDRRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN-V  107 (349)
T ss_dssp             CTTSSCEEESSSCC-EEEEEC-BSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-C
T ss_pred             CCCCCcccccccCc-eeEeec-ccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCC-c
Confidence            34556677766644 444443 4458888887655544443 33458899999865555544 457889999988654 2


Q ss_pred             eeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEEEEC-C-CcEEEE
Q 047260          585 SQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLAAAS-D-KVVSIF  659 (784)
Q Consensus       585 ~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~~s~-D-g~I~Iw  659 (784)
                      .............+++.+.+..++++-...+.|.+.+++.........   .....++++|.++.|+.+.. . +.|..+
T Consensus       108 ~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~  187 (349)
T 3v64_C          108 EEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEAS  187 (349)
T ss_dssp             EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred             eEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEE
Confidence            222222234467889988777788887778899999998644333332   45678999998888877765 4 788888


Q ss_pred             ECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeC--CeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEE-CC
Q 047260          660 DIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQ--NLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVG-GI  736 (784)
Q Consensus       660 Dl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsd--d~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s-~d  736 (784)
                      ++........+...-...+.|++++++..|+.+..  +.|..+|+........+.........+++. .+ .|+.+. ..
T Consensus       188 ~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~-~ly~td~~~  265 (349)
T 3v64_C          188 SMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-ED-SLYWTDWHT  265 (349)
T ss_dssp             ETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TT-EEEEEETTT
T ss_pred             eCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CC-EEEEecCCC
Confidence            88754322222223445789999987777766663  389999987543333333334456777773 33 454444 45


Q ss_pred             CeEEEEECCCCc
Q 047260          737 SSLELWNMAENK  748 (784)
Q Consensus       737 g~I~Iwdl~~~~  748 (784)
                      +.|..++..+++
T Consensus       266 ~~V~~~~~~~G~  277 (349)
T 3v64_C          266 KSINSANKFTGK  277 (349)
T ss_dssp             TEEEEEETTTCC
T ss_pred             CeEEEEEccCCC
Confidence            788888855554

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.61  E-value=5.1e-06  Score=85.78  Aligned_cols=191  Identities=12%  Similarity=0.131  Sum_probs=129.7

Q ss_pred             cceeEEeEeecCCCc--eEEEEEcCCCCEEEEEeCCC--eEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEe-C
Q 047260          495 FTFCEVGCIRSRNSK--VTCCHFSSDGKLLASSGHDR--KVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATAS-V  569 (784)
Q Consensus       495 ~~~~~i~~l~~H~~~--V~~l~fspdg~~Lasgs~Dg--~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs-~  569 (784)
                      ..+..+.++ .|...  ...+.|+ ++.++.+.+.+|  .|+++|+++++.+..+.-.. ........++++.|+... .
T Consensus        29 ~~~~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~  105 (262)
T 3nol_A           29 YDYQIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWK  105 (262)
T ss_dssp             EEEEEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESS
T ss_pred             cceEEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEee
Confidence            445556666 45544  4788998 677777777766  89999999999988875432 333322233455555554 4


Q ss_pred             CCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec--------CCeeEEEEe
Q 047260          570 DKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK--------GGTAQVRFQ  641 (784)
Q Consensus       570 Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~--------~~v~~v~fs  641 (784)
                      ++.+.+||..+.+. +..+... ..-..++  +++..++++. .++.|.++|..+.+.+....        ..++.+.|.
T Consensus       106 ~~~v~v~D~~t~~~-~~ti~~~-~eG~glt--~dg~~L~~Sd-Gs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~  180 (262)
T 3nol_A          106 NGLGFVWNIRNLRQ-VRSFNYD-GEGWGLT--HNDQYLIMSD-GTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV  180 (262)
T ss_dssp             SSEEEEEETTTCCE-EEEEECS-SCCCCEE--ECSSCEEECC-SSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE
T ss_pred             CCEEEEEECccCcE-EEEEECC-CCceEEe--cCCCEEEEEC-CCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE
Confidence            88999999998774 4433321 2223444  4566566654 47889999999877765543        223446665


Q ss_pred             cCCCEEEEEEC-CCcEEEEECCCCeEEEEEeCC------------CCCEEEEEEcCCCCEEEEEeCC
Q 047260          642 PRIGQLLAAAS-DKVVSIFDIETDRQTHSLQGH------------AELVNYICWDTNGDYLASVSQN  695 (784)
Q Consensus       642 p~~~~Ll~~s~-Dg~I~IwDl~t~~~i~~l~~h------------~~~V~sl~~spdg~~Lasgsdd  695 (784)
                       ++ .|++... ++.|.+.|.++++.+..+...            ....+.|+|+|+++.|++.+..
T Consensus       181 -~G-~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~  245 (262)
T 3nol_A          181 -DG-EIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL  245 (262)
T ss_dssp             -TT-EEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred             -CC-EEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence             44 5666664 789999999999998888642            2356899999998888887765

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.59  E-value=4.1e-06  Score=97.29  Aligned_cols=252  Identities=10%  Similarity=-0.009  Sum_probs=153.8

Q ss_pred             CCEEEEEeCCCeEEEEECCCCceeeecCCCC----CCeEE-EEEccCCCEEEEEeC------CCeEEEEcCCCCcceeee
Q 047260          519 GKLLASSGHDRKVVLWNMDTLQTESTPEDHK----SVVTD-VRFRPNSSQLATASV------DKSVRLWDAANPNFCSQA  587 (784)
Q Consensus       519 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~----~~It~-i~fspdg~~Latgs~------Dg~I~IWdl~~~~~~~~~  587 (784)
                      +..|++++.|+.|..+|..+++.+.......    ..+.+ .... ++ .+++++.      ++.|..+|.++++..-+.
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~  192 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRA  192 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-CC-EEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence            4577888889999999999999887654221    01211 1111 34 5566554      799999999988743322


Q ss_pred             ccCCCC-------------------------------------CeEEEEEcCCCCcEEEEEeC-----------C----C
Q 047260          588 YTGHSS-------------------------------------PIMSLDFHPKKTDLFCFCDN-----------D----N  615 (784)
Q Consensus       588 ~~~h~~-------------------------------------~V~sl~~sp~~~~ll~sgs~-----------d----g  615 (784)
                      ......                                     ....+++.++...+++..+.           |    +
T Consensus       193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~  272 (571)
T 2ad6_A          193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTM  272 (571)
T ss_dssp             ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred             ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEE
Confidence            111000                                     00134566655534433221           1    3


Q ss_pred             eEEEEeCCCCeeEEeecCC---------eeE-E--EEecCCC---EEEEEECCCcEEEEECCCCeEEEEEeCCC------
Q 047260          616 EIQYWSINPFLCTHITKGG---------TAQ-V--RFQPRIG---QLLAAASDKVVSIFDIETDRQTHSLQGHA------  674 (784)
Q Consensus       616 ~I~iwDl~~~~~~~~~~~~---------v~~-v--~fsp~~~---~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~------  674 (784)
                      .|..+|.++++.+..+...         +.. +  ....+++   .+++++.+|.|+++|.++++.+..+....      
T Consensus       273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~  352 (571)
T 2ad6_A          273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFK  352 (571)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEE
T ss_pred             EEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccc
Confidence            6999999988877655311         111 1  2224563   46667779999999999999887765321      


Q ss_pred             -------CCE--------------------------EEEEEcCCCCEEEEEe----------------------------
Q 047260          675 -------ELV--------------------------NYICWDTNGDYLASVS----------------------------  693 (784)
Q Consensus       675 -------~~V--------------------------~sl~~spdg~~Lasgs----------------------------  693 (784)
                             .++                          ..++++|+..+|++..                            
T Consensus       353 ~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~  432 (571)
T 2ad6_A          353 KVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMY  432 (571)
T ss_dssp             EECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEE
T ss_pred             cccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceec
Confidence                   111                          1356778777666543                            


Q ss_pred             ----------CCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceEEecccCCce--EE
Q 047260          694 ----------QNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIAAHENII--SA  761 (784)
Q Consensus       694 ----------dd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~~~h~~~V--~s  761 (784)
                                .+.|..||+.+++.+.++.... .+....+...+..+++++.|+.|++||..+++.+........+  .-
T Consensus       433 ~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p  511 (571)
T 2ad6_A          433 PGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF-AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSP  511 (571)
T ss_dssp             ECTTSTTSCCCEEEEEECTTTCCEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC
T ss_pred             cCccccCCCCCCeEEEEECCCCCEEEEecCCC-CccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeee
Confidence                      2389999999999888876432 2233333445667888999999999999999988332211111  22


Q ss_pred             EEEeCCCCEEEE
Q 047260          762 LAQSPVTGMVAS  773 (784)
Q Consensus       762 lafspdg~~LaS  773 (784)
                      +.+..+++.++.
T Consensus       512 ~~~~~~G~~yv~  523 (571)
T 2ad6_A          512 MTYSFKGKQYIG  523 (571)
T ss_dssp             EEEEETTEEEEE
T ss_pred             EEEEECCEEEEE
Confidence            335567764443

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.59  E-value=4.7e-05  Score=83.82  Aligned_cols=237  Identities=8%  Similarity=-0.001  Sum_probs=152.9

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEE-EEeCCCeEEEEcCCCCcceee
Q 047260          508 SKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLA-TASVDKSVRLWDAANPNFCSQ  586 (784)
Q Consensus       508 ~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~La-tgs~Dg~I~IWdl~~~~~~~~  586 (784)
                      +..+|.+..++ .+|+.+. ...|+.+++........+. ....+..++|++.+..|+ +-...+.|..++++... ...
T Consensus        77 d~~~C~~~~~~-~~l~~~~-~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~-~~~  152 (386)
T 3v65_B           77 DRRSCKALGPE-PVLLFAN-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN-VEE  152 (386)
T ss_dssp             TSSCEEECSSC-CEEEEEC-BSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC-EEE
T ss_pred             CCCeECCcccc-ceeEeec-CccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCC-cEE
Confidence            34456665553 3454443 4568999988665544443 345688999998555555 44567889999988654 222


Q ss_pred             eccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEEEEC-C-CcEEEEEC
Q 047260          587 AYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLAAAS-D-KVVSIFDI  661 (784)
Q Consensus       587 ~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~~s~-D-g~I~IwDl  661 (784)
                      .+.........+++.+.+..++++-...+.|.+.+++.........   .....++++|.++.|+.+.. . +.|..+++
T Consensus       153 ~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~  232 (386)
T 3v65_B          153 VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSM  232 (386)
T ss_dssp             EECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred             EEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeC
Confidence            2222233456788888777788877778899999987544333332   45678999998888887765 3 68888888


Q ss_pred             CCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeC--CeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeE
Q 047260          662 ETDRQTHSLQGHAELVNYICWDTNGDYLASVSQ--NLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSL  739 (784)
Q Consensus       662 ~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsd--d~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I  739 (784)
                      ........+.......+.|+|+|++..|+.+..  +.|..+|+........+.........+++. .+..+++-...+.|
T Consensus       233 dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V  311 (386)
T 3v65_B          233 DGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSI  311 (386)
T ss_dssp             TSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEE
T ss_pred             CCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE-CCEEEEeeCCCCeE
Confidence            754333333334456789999987777766653  389999987544333343334456778883 33334444455789


Q ss_pred             EEEECCCCce
Q 047260          740 ELWNMAENKS  749 (784)
Q Consensus       740 ~Iwdl~~~~~  749 (784)
                      ..++..+++.
T Consensus       312 ~~~~~~~G~~  321 (386)
T 3v65_B          312 NSANKFTGKN  321 (386)
T ss_dssp             EEEETTTCCS
T ss_pred             EEEECCCCcc
Confidence            9998655543

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.58  E-value=3.1e-05  Score=82.00  Aligned_cols=219  Identities=10%  Similarity=-0.018  Sum_probs=136.6

Q ss_pred             CCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeC-CC-eEEEEeCCCCee
Q 047260          550 SVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDN-DN-EIQYWSINPFLC  627 (784)
Q Consensus       550 ~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~-dg-~I~iwDl~~~~~  627 (784)
                      .....++|+++++++++-..++.|..||.+...  ...+ .....+..+++.+++. ++++... ++ .|..+|..+.+.
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~--~~~~-~~~~~p~gia~~~dG~-l~vad~~~~~~~v~~~d~~~g~~  107 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ--QIHA-TVEGKVSGLAFTSNGD-LVATGWNADSIPVVSLVKSDGTV  107 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE--EEEE-ECSSEEEEEEECTTSC-EEEEEECTTSCEEEEEECTTSCE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCce--EEEE-eCCCCceeEEEcCCCc-EEEEeccCCcceEEEEcCCCCeE
Confidence            457789999999877776678999999987532  2222 2235688999999987 5554433 22 477777666554


Q ss_pred             EEeec----CCeeEEEEecCCCEEEEEE-CCCcEEEEECCCCeE-EEEEe---------CCCCCEEEEEEcCCCCEEEEE
Q 047260          628 THITK----GGTAQVRFQPRIGQLLAAA-SDKVVSIFDIETDRQ-THSLQ---------GHAELVNYICWDTNGDYLASV  692 (784)
Q Consensus       628 ~~~~~----~~v~~v~fsp~~~~Ll~~s-~Dg~I~IwDl~t~~~-i~~l~---------~h~~~V~sl~~spdg~~Lasg  692 (784)
                      .....    .....+++.+ +..++++. .++.|+++|...++. +....         ......+.|  ++++.+|+.+
T Consensus       108 ~~~~~~~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~  184 (306)
T 2p4o_A          108 ETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVS  184 (306)
T ss_dssp             EEEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEE
T ss_pred             EEEEeCCCccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEE
Confidence            33221    1123344444 34555555 488999999876532 21111         111234555  7888877776


Q ss_pred             eC--CeEEEEeCCC-Cce--EEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceEEe---cccCCceEEEEE
Q 047260          693 SQ--NLVKVWSMAS-GEC--IQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTI---AAHENIISALAQ  764 (784)
Q Consensus       693 sd--d~I~IwDl~t-~~~--i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~---~~h~~~V~slaf  764 (784)
                      ..  +.|.+||+.. ++.  ...+.. ......++++++|.++++....+.|.+||.. ++...+   ......+++++|
T Consensus       185 d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~  262 (306)
T 2p4o_A          185 NTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAF  262 (306)
T ss_dssp             ETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEE
T ss_pred             eCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEE
Confidence            63  3999999874 321  112211 1345678999999876666667899999976 544322   223356899999


Q ss_pred             e---CCCCEEEEEECC
Q 047260          765 S---PVTGMVASASHD  777 (784)
Q Consensus       765 s---pdg~~LaSgs~D  777 (784)
                      .   ++++.|+.++..
T Consensus       263 ~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          263 GQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             CCSTTTTTEEEEEECT
T ss_pred             ecccCCCCEEEEECCC
Confidence            9   888777766543

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.58  E-value=2.2e-05  Score=91.32  Aligned_cols=263  Identities=10%  Similarity=0.033  Sum_probs=159.7

Q ss_pred             CCEEEEEeCCCeEEEEECCCCceeeecCCCCCCe---------EEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeecc
Q 047260          519 GKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVV---------TDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYT  589 (784)
Q Consensus       519 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~I---------t~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~  589 (784)
                      +..|++++.++.|..+|..+++.+..+.......         ..+++  .+..|++++.|+.|..+|.++++.+-..-.
T Consensus        68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~  145 (582)
T 1flg_A           68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKF  145 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred             CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecC
Confidence            3345555654459999999999887775432210         11222  355788888999999999999885433221


Q ss_pred             CC-C--CCeE-E-EEEcC--CCCcEEEEEe------CCCeEEEEeCCCCeeEEeecCC---e------------------
Q 047260          590 GH-S--SPIM-S-LDFHP--KKTDLFCFCD------NDNEIQYWSINPFLCTHITKGG---T------------------  635 (784)
Q Consensus       590 ~h-~--~~V~-s-l~~sp--~~~~ll~sgs------~dg~I~iwDl~~~~~~~~~~~~---v------------------  635 (784)
                      .. .  ..+. . +....  ++..+++++.      .++.|+.+|.++++.+......   +                  
T Consensus       146 ~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~  225 (582)
T 1flg_A          146 ADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPS  225 (582)
T ss_dssp             SCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTT
T ss_pred             CCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCccccccccccccc
Confidence            11 0  0111 1 11111  1222444443      3789999999987766543311   0                  


Q ss_pred             -----------------------eEEEEecCCCEEEEEEC--------------------C----CcEEEEECCCCeEEE
Q 047260          636 -----------------------AQVRFQPRIGQLLAAAS--------------------D----KVVSIFDIETDRQTH  668 (784)
Q Consensus       636 -----------------------~~v~fsp~~~~Ll~~s~--------------------D----g~I~IwDl~t~~~i~  668 (784)
                                             ..+++.|..+.++++..                    |    +.|..+|.++++.+.
T Consensus       226 w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W  305 (582)
T 1flg_A          226 WPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKW  305 (582)
T ss_dssp             SCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEE
T ss_pred             CCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEE
Confidence                                   12456777788887773                    2    589999999999988


Q ss_pred             EEeC--CC--------CCEEEEEEc-CCCC---EEEEEeC-CeEEEEeCCCCceEEEeccCC-------------Cc---
Q 047260          669 SLQG--HA--------ELVNYICWD-TNGD---YLASVSQ-NLVKVWSMASGECIQELSSNG-------------NQ---  717 (784)
Q Consensus       669 ~l~~--h~--------~~V~sl~~s-pdg~---~Lasgsd-d~I~IwDl~t~~~i~~l~~~~-------------~~---  717 (784)
                      .+..  |.        .++. +... .+|+   +++.++. +.++++|..+|+.+..+....             .+   
T Consensus       306 ~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~  384 (582)
T 1flg_A          306 FYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVER  384 (582)
T ss_dssp             EEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEEC
T ss_pred             EEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEc
Confidence            8753  32        1221 2222 4674   6666664 499999999999887665431             00   


Q ss_pred             -----------------------------eEEEEEecCCCEEEEEE---------------------------------C
Q 047260          718 -----------------------------FHSCVFHPSYSTLLVVG---------------------------------G  735 (784)
Q Consensus       718 -----------------------------I~sl~fspdg~~L~s~s---------------------------------~  735 (784)
                                                   -..++++|+...+++..                                 .
T Consensus       385 ~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~  464 (582)
T 1flg_A          385 EGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDH  464 (582)
T ss_dssp             TTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSC
T ss_pred             cccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCC
Confidence                                         01345666655555543                                 2


Q ss_pred             CCeEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          736 ISSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       736 dg~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      +|.|..||+.+++.+-...+..++..-.....+.+++.++.||.|+.||
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D  513 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFD  513 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEE
T ss_pred             cceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEE
Confidence            5789999999998873222222222222223467888899999999886

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.54  E-value=2.6e-05  Score=90.82  Aligned_cols=249  Identities=12%  Similarity=0.024  Sum_probs=150.3

Q ss_pred             EEEEeCCCeEEEEECCCCceeeecCCCC----CCeEE-EEEccCCCEEEEEe------CCCeEEEEcCCCCcceeeeccC
Q 047260          522 LASSGHDRKVVLWNMDTLQTESTPEDHK----SVVTD-VRFRPNSSQLATAS------VDKSVRLWDAANPNFCSQAYTG  590 (784)
Q Consensus       522 Lasgs~Dg~I~IWd~~t~~~~~~l~~h~----~~It~-i~fspdg~~Latgs------~Dg~I~IWdl~~~~~~~~~~~~  590 (784)
                      |++++.|+.|..+|..+++.+.......    ..+++ ..+. ++ .+++++      .++.|+.+|.++++..-+....
T Consensus       124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~  201 (599)
T 1w6s_A          124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT  201 (599)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred             EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCC
Confidence            7778889999999999999887654322    02221 1111 44 455554      3899999999998743322211


Q ss_pred             CCC------------------------------------Ce-EEEEEcCCCCcEEEEEeCC----------------CeE
Q 047260          591 HSS------------------------------------PI-MSLDFHPKKTDLFCFCDND----------------NEI  617 (784)
Q Consensus       591 h~~------------------------------------~V-~sl~~sp~~~~ll~sgs~d----------------g~I  617 (784)
                      ...                                    .+ ..+++.++.. +++.+..+                +.|
T Consensus       202 ~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g-~vy~g~g~~~p~~~~~r~gd~~y~~sv  280 (599)
T 1w6s_A          202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTN-LIYFGTGNPAPWNETMRPGDNKWTMTI  280 (599)
T ss_dssp             SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTT-EEEEECCCCSCSCGGGSCSCCTTSSEE
T ss_pred             CCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCC-EEEEeCCCCccccCcccCCCccccceE
Confidence            100                                    00 1344555555 44444433                479


Q ss_pred             EEEeCCCCeeEEeecCC---------e-eEEEEe---cCC---CEEEEEECCCcEEEEECCCCeEEEEEeCCC-------
Q 047260          618 QYWSINPFLCTHITKGG---------T-AQVRFQ---PRI---GQLLAAASDKVVSIFDIETDRQTHSLQGHA-------  674 (784)
Q Consensus       618 ~iwDl~~~~~~~~~~~~---------v-~~v~fs---p~~---~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~-------  674 (784)
                      ..+|.++++.+..+...         . ..+.+.   .++   ..++.++.+|.|+++|.++++.+.......       
T Consensus       281 ~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~  360 (599)
T 1w6s_A          281 FGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKS  360 (599)
T ss_dssp             EEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEE
T ss_pred             EEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccc
Confidence            99999998887655421         0 112222   456   346667789999999999999887665211       


Q ss_pred             ------CCE--------------------------EEEEEcCCCCEEEEE------------------------------
Q 047260          675 ------ELV--------------------------NYICWDTNGDYLASV------------------------------  692 (784)
Q Consensus       675 ------~~V--------------------------~sl~~spdg~~Lasg------------------------------  692 (784)
                            .++                          ..++++|+..++++.                              
T Consensus       361 ~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~  440 (599)
T 1w6s_A          361 VDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYP  440 (599)
T ss_dssp             ECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred             cccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceecc
Confidence                  111                          134566665555442                              


Q ss_pred             ----------eCCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE-EecccCC-ceE
Q 047260          693 ----------SQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM-TIAAHEN-IIS  760 (784)
Q Consensus       693 ----------sdd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~-~V~  760 (784)
                                ..+.|..||+.+++.+.+..... ++..-.+...+..+++++.|+.|+.||.++++.+ .+....+ ...
T Consensus       441 ~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~  519 (599)
T 1w6s_A          441 GPKGDRQNYEGLGQIKAYNAITGDYKWEKMERF-AVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGY  519 (599)
T ss_dssp             CTTSBTTTTBCCEEEEEECTTTCCEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSC
T ss_pred             CCcCCcccCCCcCeEEEEECCCCCEEeEecCCC-CccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEec
Confidence                      12478999999999887775321 2222223335667888999999999999999988 3322211 112


Q ss_pred             EEEEeCCCC-EEEEE
Q 047260          761 ALAQSPVTG-MVASA  774 (784)
Q Consensus       761 slafspdg~-~LaSg  774 (784)
                      -+.+..+|+ ||++.
T Consensus       520 P~~y~~~G~qyv~~~  534 (599)
T 1w6s_A          520 PMTYTHKGTQYVAIY  534 (599)
T ss_dssp             CEEEEETTEEEEEEE
T ss_pred             cEEEEeCCEEEEEEE
Confidence            245556776 44443

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.53  E-value=0.00028  Score=75.61  Aligned_cols=276  Identities=9%  Similarity=-0.018  Sum_probs=153.9

Q ss_pred             CcceeEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecC----CCCCCeEEEEEccCCCEEEEEeC
Q 047260          494 GFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPE----DHKSVVTDVRFRPNSSQLATASV  569 (784)
Q Consensus       494 ~~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~----~h~~~It~i~fspdg~~Latgs~  569 (784)
                      +.++..+..  .....+.+|.|.+++..++ ++.+|.| +...+.++.-..+.    .....+.+|.|.+ +. ++.++.
T Consensus        24 g~~W~~~~~--~~~~~~~~v~~~~~~~~~~-~G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~-~~~~g~   97 (327)
T 2xbg_A           24 YNPWEAIQL--PTTATILDMSFIDRHHGWL-VGVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NE-GWIVGE   97 (327)
T ss_dssp             SCCEEEEEC--SCSSCEEEEEESSSSCEEE-EETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TE-EEEEEE
T ss_pred             CCCceEeec--CCCCcEEEEEECCCCcEEE-EcCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-Ce-EEEEEC
Confidence            444544432  2345799999988777777 4567765 33444343222221    2345689999976 43 444556


Q ss_pred             CCeEEEEcCCCCcceeeecc--CCCCCeEEEEEcCCCCcEEEEEeCCCeEEE-EeCC-CCeeEE-eecCCeeEEEEecCC
Q 047260          570 DKSVRLWDAANPNFCSQAYT--GHSSPIMSLDFHPKKTDLFCFCDNDNEIQY-WSIN-PFLCTH-ITKGGTAQVRFQPRI  644 (784)
Q Consensus       570 Dg~I~IWdl~~~~~~~~~~~--~h~~~V~sl~~sp~~~~ll~sgs~dg~I~i-wDl~-~~~~~~-~~~~~v~~v~fsp~~  644 (784)
                      ++.|.. ..+.++.-.....  .+...+..|.+.+++. +++++. ++.|.. .|-- +...+. .....+..+.+.+++
T Consensus        98 ~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~-~g~v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~  174 (327)
T 2xbg_A           98 PPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGS-AEMITN-VGAIYRTKDSGKNWQALVQEAIGVMRNLNRSPSG  174 (327)
T ss_dssp             TTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTE-EEEEET-TCCEEEESSTTSSEEEEECSCCCCEEEEEECTTS
T ss_pred             CCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCC-EEEEeC-CccEEEEcCCCCCCEEeecCCCcceEEEEEcCCC
Confidence            675543 2222232111111  2345577888776554 555444 554433 3321 222221 123457788898887


Q ss_pred             CEEEEEECCCcEEEE-EC--CCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEEEecc----CCCc
Q 047260          645 GQLLAAASDKVVSIF-DI--ETDRQTHSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELSS----NGNQ  717 (784)
Q Consensus       645 ~~Ll~~s~Dg~I~Iw-Dl--~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~~l~~----~~~~  717 (784)
                      ..++ .+.++.|..- |-  .+-+.+.  ......+..+.+.+++.+++++.++.+++.+...++.-..+..    ....
T Consensus       175 ~~~~-~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~  251 (327)
T 2xbg_A          175 EYVA-VSSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVG  251 (327)
T ss_dssp             CEEE-EETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEECCCBCTTSSCCSC
T ss_pred             cEEE-EECCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEEeCCceEEEecCCCCCeeEeccCCcccCCcc
Confidence            6554 4455555443 32  2223331  2345678899999999988777777777764332332222221    2235


Q ss_pred             eEEEEEecCCCEEEEEECCCeEEEEECCCCceEE-ec---ccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          718 FHSCVFHPSYSTLLVVGGISSLELWNMAENKSMT-IA---AHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       718 I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~-~~---~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      +.++.+.+++. +++++.++.| ++..+.++.-. +.   .+...+.++.|.+++ .++.++.+|.|.-++
T Consensus       252 ~~~v~~~~~~~-~~~~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          252 FLDLAYRTPNE-VWLAGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYV  319 (327)
T ss_dssp             EEEEEESSSSC-EEEEESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEEC
T ss_pred             eEEEEecCCCE-EEEEeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEc
Confidence            78889988766 4555567766 45556555443 22   234568889887544 566677889887653

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.50  E-value=6.2e-06  Score=98.98  Aligned_cols=237  Identities=11%  Similarity=0.043  Sum_probs=135.3

Q ss_pred             ceEEEEEc-CCCCEEEEEeC-CC----eEEEEECCCC-ceeeecCCCCCCeEEEEEccCCCEEEEEeCC-----CeEEEE
Q 047260          509 KVTCCHFS-SDGKLLASSGH-DR----KVVLWNMDTL-QTESTPEDHKSVVTDVRFRPNSSQLATASVD-----KSVRLW  576 (784)
Q Consensus       509 ~V~~l~fs-pdg~~Lasgs~-Dg----~I~IWd~~t~-~~~~~l~~h~~~It~i~fspdg~~Latgs~D-----g~I~IW  576 (784)
                      .+...+|| |||++||.+.. +|    .|+++|+.++ +.+...  -......++|+||++.|+....|     ..|.++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~--~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~  252 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADK--VSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRH  252 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCC--EEEECSCCEECSSTTEEEEEEECTTCCEEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcc--ccCceeeEEEecCCCEEEEEEECCCCCCCEEEEE
Confidence            67889999 99998886543 22    5999999988 632110  01123468999999988887765     258888


Q ss_pred             cCCCCcce-eeecc-CCCCCeEEEEEcCCCCcEEEEEeC--CCeEEEEeCCCC--ee--EEeec---CCeeEEEEecCCC
Q 047260          577 DAANPNFC-SQAYT-GHSSPIMSLDFHPKKTDLFCFCDN--DNEIQYWSINPF--LC--THITK---GGTAQVRFQPRIG  645 (784)
Q Consensus       577 dl~~~~~~-~~~~~-~h~~~V~sl~~sp~~~~ll~sgs~--dg~I~iwDl~~~--~~--~~~~~---~~v~~v~fsp~~~  645 (784)
                      ++.++... ...+. ........+.|+|++..++++...  ...|+++|+.+.  ..  .....   .....+.|+ .++
T Consensus       253 ~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~-~g~  331 (751)
T 2xe4_A          253 VMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMH-GTS  331 (751)
T ss_dssp             ETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEE-TTT
T ss_pred             ECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeee-eCC
Confidence            88775421 12222 223456788999999988877653  346888888764  22  22222   223333333 266


Q ss_pred             EEEEEEC-C----CcEEEEECCCCeEEEE-EeCCCC--CEEEEEEcCCCCEE-EEEe-CC--eEEEEeC-------CCCc
Q 047260          646 QLLAAAS-D----KVVSIFDIETDRQTHS-LQGHAE--LVNYICWDTNGDYL-ASVS-QN--LVKVWSM-------ASGE  706 (784)
Q Consensus       646 ~Ll~~s~-D----g~I~IwDl~t~~~i~~-l~~h~~--~V~sl~~spdg~~L-asgs-dd--~I~IwDl-------~t~~  706 (784)
                      .|+..+. +    ..|.++|+.+...... +..+..  .+..+.+.  +..| ++.. ++  .|.++|+       .+++
T Consensus       332 ~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g~  409 (751)
T 2xe4_A          332 HLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYLVVAGRRAGLTRIWTMMADSQDGVFKAGT  409 (751)
T ss_dssp             EEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEEEEEEEETTEEEEEEEECCTTTSCCCTTT
T ss_pred             EEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEEEEEEEeCCEEEEEEEecccccccccCCc
Confidence            6666554 3    3677778765222122 222333  34555554  4444 4444 44  6778886       3444


Q ss_pred             eEEEeccCC-CceEEEEE----ecCCCE-EEEEECC---CeEEEEECCCCceE
Q 047260          707 CIQELSSNG-NQFHSCVF----HPSYST-LLVVGGI---SSLELWNMAENKSM  750 (784)
Q Consensus       707 ~i~~l~~~~-~~I~sl~f----spdg~~-L~s~s~d---g~I~Iwdl~~~~~~  750 (784)
                      .+..+.... ..+..+.+    ++++.. +++.+..   ..|+.+|+.+++..
T Consensus       410 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~~  462 (751)
T 2xe4_A          410 GLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSRT  462 (751)
T ss_dssp             CCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCEE
T ss_pred             cceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcEE
Confidence            134443222 12233322    345543 4444433   46888888776644

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.50  E-value=0.00042  Score=73.82  Aligned_cols=223  Identities=8%  Similarity=-0.042  Sum_probs=142.6

Q ss_pred             EEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEE-eCCCeEEEEcCCCC---cceeeeccCCCCCeE
Q 047260          521 LLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATA-SVDKSVRLWDAANP---NFCSQAYTGHSSPIM  596 (784)
Q Consensus       521 ~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latg-s~Dg~I~IWdl~~~---~~~~~~~~~h~~~V~  596 (784)
                      +|+.+. ...|+..|+.+......+. ....+..++|++.+..|+.+ ..++.|..+++...   ......+...-....
T Consensus         3 ~ll~~~-~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~   80 (316)
T 1ijq_A            3 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD   80 (316)
T ss_dssp             EEEEEC-BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred             EEEEEC-CCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence            344443 3458999998776555543 34567899999866555544 45689999998751   212222222224567


Q ss_pred             EEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEEEECC--CcEEEEECCCCeEEEEEe
Q 047260          597 SLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLAAASD--KVVSIFDIETDRQTHSLQ  671 (784)
Q Consensus       597 sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~~s~D--g~I~IwDl~t~~~i~~l~  671 (784)
                      .+++.+.+..++++-...+.|.+++++.........   .....++++|.++.|+.+...  +.|..+++..........
T Consensus        81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~  160 (316)
T 1ijq_A           81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT  160 (316)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred             EEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEE
Confidence            889987777787777778999999998644332222   456789999988888877763  688888886433222222


Q ss_pred             CCCCCEEEEEEcCCCCEEEEEeC--CeEEEEeCCCCceEEEec---cCCCceEEEEEecCCCEEEEEE-CCCeEEEEECC
Q 047260          672 GHAELVNYICWDTNGDYLASVSQ--NLVKVWSMASGECIQELS---SNGNQFHSCVFHPSYSTLLVVG-GISSLELWNMA  745 (784)
Q Consensus       672 ~h~~~V~sl~~spdg~~Lasgsd--d~I~IwDl~t~~~i~~l~---~~~~~I~sl~fspdg~~L~s~s-~dg~I~Iwdl~  745 (784)
                      ..-...+.|++++++..|+.+..  +.|..+|+.... ...+.   ........+++.. + .|+.+. ..+.|..++..
T Consensus       161 ~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~~-~-~ly~~d~~~~~V~~~~~~  237 (316)
T 1ijq_A          161 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFE-D-KVFWTDIINEAIFSANRL  237 (316)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEET-T-EEEEEETTTTEEEEEETT
T ss_pred             CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEEC-C-EEEEEECCCCeEEEEeCC
Confidence            33456789999998777766663  399999987432 22222   1223456777753 3 444444 45789999876


Q ss_pred             CCc
Q 047260          746 ENK  748 (784)
Q Consensus       746 ~~~  748 (784)
                      +++
T Consensus       238 ~g~  240 (316)
T 1ijq_A          238 TGS  240 (316)
T ss_dssp             TCC
T ss_pred             CCc
Confidence            654

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.49  E-value=4.3e-05  Score=88.87  Aligned_cols=254  Identities=11%  Similarity=0.022  Sum_probs=153.7

Q ss_pred             CCEEEEEeCCCeEEEEECCCCceeeecCCCCC----CeE-EEEEcc---CCC-EEEEEe------CCCeEEEEcCCCCcc
Q 047260          519 GKLLASSGHDRKVVLWNMDTLQTESTPEDHKS----VVT-DVRFRP---NSS-QLATAS------VDKSVRLWDAANPNF  583 (784)
Q Consensus       519 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~----~It-~i~fsp---dg~-~Latgs------~Dg~I~IWdl~~~~~  583 (784)
                      +..|++++.|+.|..+|.++++.+........    .+. ......   +++ .+++++      .++.|..+|.++++.
T Consensus       117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~  196 (582)
T 1flg_A          117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE  196 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence            45677788999999999999998877643221    111 111111   233 566654      378999999998874


Q ss_pred             eeeeccCCCC-----------------------------------------CeEEEEEcCCCCcEEEEEe----------
Q 047260          584 CSQAYTGHSS-----------------------------------------PIMSLDFHPKKTDLFCFCD----------  612 (784)
Q Consensus       584 ~~~~~~~h~~-----------------------------------------~V~sl~~sp~~~~ll~sgs----------  612 (784)
                      .-.. .....                                         .-..+++.|+...+++..+          
T Consensus       197 ~W~~-~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r  275 (582)
T 1flg_A          197 IWMR-PFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWAR  275 (582)
T ss_dssp             EEEE-ESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGG
T ss_pred             Eeec-CCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCccc
Confidence            3221 11000                                         0012455566554444332          


Q ss_pred             --C-------C----CeEEEEeCCCCeeEEeecCC---------e-eEEEEe---cCCC---EEEEEECCCcEEEEECCC
Q 047260          613 --N-------D----NEIQYWSINPFLCTHITKGG---------T-AQVRFQ---PRIG---QLLAAASDKVVSIFDIET  663 (784)
Q Consensus       613 --~-------d----g~I~iwDl~~~~~~~~~~~~---------v-~~v~fs---p~~~---~Ll~~s~Dg~I~IwDl~t  663 (784)
                        .       |    +.|..+|.++++.+..+...         + ..+.+.   .+++   .++.++.+|.|+++|.++
T Consensus       276 ~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~t  355 (582)
T 1flg_A          276 TAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSN  355 (582)
T ss_dssp             SCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTT
T ss_pred             ccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCC
Confidence              1       2    68999999998887665321         1 112222   4563   577788899999999999


Q ss_pred             CeEEEEEeCCCC-------------CE--------------------------------EEEEEcCCCCEEEEEe-----
Q 047260          664 DRQTHSLQGHAE-------------LV--------------------------------NYICWDTNGDYLASVS-----  693 (784)
Q Consensus       664 ~~~i~~l~~h~~-------------~V--------------------------------~sl~~spdg~~Lasgs-----  693 (784)
                      ++.+..+.....             ++                                ..++++|+..++++..     
T Consensus       356 G~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~  435 (582)
T 1flg_A          356 GKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKE  435 (582)
T ss_dssp             CCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEE
T ss_pred             CCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcce
Confidence            998877653320             00                                1235566544444322     


Q ss_pred             -----------------------------CCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEEC
Q 047260          694 -----------------------------QNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNM  744 (784)
Q Consensus       694 -----------------------------dd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl  744 (784)
                                                   .+.|..||+.+++.+.++.... .+..-.....+..+++++.|+.|+.||.
T Consensus       436 ~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~  514 (582)
T 1flg_A          436 DYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDA  514 (582)
T ss_dssp             EEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEET
T ss_pred             eeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEEC
Confidence                                         2479999999999887776432 2222222334667888999999999999


Q ss_pred             CCCceEEecccCCceE--EEEEeCCCC-EEEEE
Q 047260          745 AENKSMTIAAHENIIS--ALAQSPVTG-MVASA  774 (784)
Q Consensus       745 ~~~~~~~~~~h~~~V~--slafspdg~-~LaSg  774 (784)
                      ++++.+-.......+.  -+.|..+|+ ||++.
T Consensus       515 ~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~  547 (582)
T 1flg_A          515 KSGKELWKFQTGSGIVSPPITWEQDGEQYLGVT  547 (582)
T ss_dssp             TTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             CCCCEEEEecCCCCcccCceEEEECCEEEEEEE
Confidence            9999883332222222  256667776 44443

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.43  E-value=2e-05  Score=81.46  Aligned_cols=174  Identities=9%  Similarity=0.053  Sum_probs=122.0

Q ss_pred             eEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEee-cCCeeEEEEecCCCEEEEEEC-CCcEEEEECCCCeEEEEEeC
Q 047260          595 IMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHIT-KGGTAQVRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHSLQG  672 (784)
Q Consensus       595 V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~-~~~v~~v~fsp~~~~Ll~~s~-Dg~I~IwDl~t~~~i~~l~~  672 (784)
                      ...+.|+  +..++++.+.+|.|+++|+.+++.+... .......-+.++++.|+.... ++.+.+||..+.+.+.++..
T Consensus        57 tqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~  134 (268)
T 3nok_A           57 TQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWMERLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRY  134 (268)
T ss_dssp             EEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEEECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEEC
T ss_pred             cceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEECCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeC
Confidence            4678887  3568888888999999999987765544 333333334455666766654 89999999999999999875


Q ss_pred             CCCCEEEEEEcCCCCEEEEEe-CCeEEEEeCCCCceEEEeccCC-----CceEEEEEecCCCEEEEEE-CCCeEEEEECC
Q 047260          673 HAELVNYICWDTNGDYLASVS-QNLVKVWSMASGECIQELSSNG-----NQFHSCVFHPSYSTLLVVG-GISSLELWNMA  745 (784)
Q Consensus       673 h~~~V~sl~~spdg~~Lasgs-dd~I~IwDl~t~~~i~~l~~~~-----~~I~sl~fspdg~~L~s~s-~dg~I~Iwdl~  745 (784)
                      .... ..++  +++..|+.+. ++.|.++|..+.+.+.++....     ..++.+.|. +|. |++.. .++.|.+.|..
T Consensus       135 ~~eG-wGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~-lyanvw~s~~I~vIDp~  209 (268)
T 3nok_A          135 SGEG-WGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGV-IYANIWHSSDVLEIDPA  209 (268)
T ss_dssp             SSCC-CCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTCSEEEEECTT
T ss_pred             CCce-eEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCE-EEEEECCCCeEEEEeCC
Confidence            3322 3344  4567666655 4599999999999888876422     234667777 664 55554 56799999999


Q ss_pred             CCceEEecc--------------cCCceEEEEEeCCCCEEEEEE
Q 047260          746 ENKSMTIAA--------------HENIISALAQSPVTGMVASAS  775 (784)
Q Consensus       746 ~~~~~~~~~--------------h~~~V~slafspdg~~LaSgs  775 (784)
                      +++.+....              -....+.|+|+|+++.|++.+
T Consensus       210 TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          210 TGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             TCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             CCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            998872211              124678999999876555544

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.41  E-value=7.9e-05  Score=76.19  Aligned_cols=178  Identities=7%  Similarity=0.012  Sum_probs=122.5

Q ss_pred             CCeEEEEEcCCCCcEEEEEeCC--CeEEEEeCCCCeeEEeec--CCeeEEEEecCCCEEEEEEC-CCcEEEEECCCCeEE
Q 047260          593 SPIMSLDFHPKKTDLFCFCDND--NEIQYWSINPFLCTHITK--GGTAQVRFQPRIGQLLAAAS-DKVVSIFDIETDRQT  667 (784)
Q Consensus       593 ~~V~sl~~sp~~~~ll~sgs~d--g~I~iwDl~~~~~~~~~~--~~v~~v~fsp~~~~Ll~~s~-Dg~I~IwDl~t~~~i  667 (784)
                      .-...+.|+.  ..++.+.+.+  ..|+++|+.+++.+....  .......+...++.|+.... ++.+.+||..+.+.+
T Consensus        21 ~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~   98 (243)
T 3mbr_X           21 AFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPR   98 (243)
T ss_dssp             CCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEE
T ss_pred             cccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEE
Confidence            3456889986  4577777765  489999999998887665  33333334445677777665 899999999999999


Q ss_pred             EEEeCCCCCEEEEEEcCCCCEEEEE-eCCeEEEEeCCCCceEEEeccCC-----CceEEEEEecCCCEEEEEECCCeEEE
Q 047260          668 HSLQGHAELVNYICWDTNGDYLASV-SQNLVKVWSMASGECIQELSSNG-----NQFHSCVFHPSYSTLLVVGGISSLEL  741 (784)
Q Consensus       668 ~~l~~h~~~V~sl~~spdg~~Lasg-sdd~I~IwDl~t~~~i~~l~~~~-----~~I~sl~fspdg~~L~s~s~dg~I~I  741 (784)
                      .++...... ..++  +++..|+.+ +++.|.++|..+.+.+.++....     ..++.+.|. ++..++..-.+..|.+
T Consensus        99 ~ti~~~~~G-wglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~v  174 (243)
T 3mbr_X           99 ARFRYPGEG-WALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIAR  174 (243)
T ss_dssp             EEEECSSCC-CEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEE
T ss_pred             EEEeCCCCc-eEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEE
Confidence            998754332 3444  445544444 34599999999999888876432     345666666 5554434435679999


Q ss_pred             EECCCCceEEecc--------------cCCceEEEEEeCCCCEEEEEEC
Q 047260          742 WNMAENKSMTIAA--------------HENIISALAQSPVTGMVASASH  776 (784)
Q Consensus       742 wdl~~~~~~~~~~--------------h~~~V~slafspdg~~LaSgs~  776 (784)
                      .|..+++.+....              -....+.|+++|+++.|++.+.
T Consensus       175 IDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          175 IDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             ECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             EECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            9999999873211              1235789999998876666553

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.39  E-value=0.0002  Score=76.55  Aligned_cols=227  Identities=8%  Similarity=-0.003  Sum_probs=142.1

Q ss_pred             EEEEEeCCCeEEEEECCCCc-eeeecCCCCCCeEEEEEccCCCEE-EEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEE
Q 047260          521 LLASSGHDRKVVLWNMDTLQ-TESTPEDHKSVVTDVRFRPNSSQL-ATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSL  598 (784)
Q Consensus       521 ~Lasgs~Dg~I~IWd~~t~~-~~~~l~~h~~~It~i~fspdg~~L-atgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl  598 (784)
                      +|+.+. ...|+.++++... ....+......+..++|++.+..| ++-...+.|..+++.............-.....+
T Consensus         6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~gl   84 (318)
T 3sov_A            6 LLLYAN-RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGL   84 (318)
T ss_dssp             EEEEEC-EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEE
T ss_pred             EEEEEc-cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEE
Confidence            344333 4569999998653 111111122356789999854444 4545678899999876532122222223456788


Q ss_pred             EEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEEEEC--CCcEEEEECCCCeEEEEEeCC
Q 047260          599 DFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLAAAS--DKVVSIFDIETDRQTHSLQGH  673 (784)
Q Consensus       599 ~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~~s~--Dg~I~IwDl~t~~~i~~l~~h  673 (784)
                      ++.+.+..++++-...+.|.+++++.........   .....+++.|.++.|+.+..  .+.|..+++........+...
T Consensus        85 avd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~  164 (318)
T 3sov_A           85 ACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSE  164 (318)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSS
T ss_pred             EEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECC
Confidence            8888777788777778899999998643332222   45678999998888888774  578888888643322222333


Q ss_pred             CCCEEEEEEcCCCCEEEEEeC--CeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCce
Q 047260          674 AELVNYICWDTNGDYLASVSQ--NLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKS  749 (784)
Q Consensus       674 ~~~V~sl~~spdg~~Lasgsd--d~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~  749 (784)
                      -..-+.|+|++++..|+.+..  +.|..+|+........+.........+++..+ ..+++-...+.|..++..+++.
T Consensus       165 l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~~-~lywtd~~~~~V~~~~~~~G~~  241 (318)
T 3sov_A          165 IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEG  241 (318)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEETT-EEEEEETTTTEEEEEETTTCCS
T ss_pred             CCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeCC-EEEEEecCCCeEEEEECCCCCc
Confidence            445689999997777766653  39999998654332223323445567777533 3334434457899999866653

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.39  E-value=0.00058  Score=72.72  Aligned_cols=216  Identities=11%  Similarity=0.009  Sum_probs=138.7

Q ss_pred             EEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCC----CeeEEeec---CCe
Q 047260          563 QLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINP----FLCTHITK---GGT  635 (784)
Q Consensus       563 ~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~----~~~~~~~~---~~v  635 (784)
                      +|+.+.. ..|+..|+..... ..... ....+..++|++.+..++++-..++.|..++++.    ........   ...
T Consensus         3 ~ll~~~~-~~I~~i~~~~~~~-~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p   79 (316)
T 1ijq_A            3 YLFFTNR-HEVRKMTLDRSEY-TSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP   79 (316)
T ss_dssp             EEEEECB-SSEEEEETTSCCC-EEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred             EEEEECC-CeEEEEECCCcce-Eehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCc
Confidence            4444443 5689999987653 22222 3456889999998877888877889999999876    22222222   345


Q ss_pred             eEEEEecCCCEEEEEEC-CCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-C--CeEEEEeCCCCceEEEe
Q 047260          636 AQVRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVS-Q--NLVKVWSMASGECIQEL  711 (784)
Q Consensus       636 ~~v~fsp~~~~Ll~~s~-Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgs-d--d~I~IwDl~t~~~i~~l  711 (784)
                      ..+++.+.++.|+.+.. .+.|.++|+........+.........++++|.+..|+.+. .  +.|..+++.. .....+
T Consensus        80 ~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~~~~  158 (316)
T 1ijq_A           80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSL  158 (316)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEE
T ss_pred             CEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CCeEEE
Confidence            78899887777776654 78999999876544333443445678999998666555444 2  4788888753 333333


Q ss_pred             -ccCCCceEEEEEecCCCEEEEEECC-CeEEEEECCCCceEEecc---cCCceEEEEEeCCCCEEEEEECCCcEEEe
Q 047260          712 -SSNGNQFHSCVFHPSYSTLLVVGGI-SSLELWNMAENKSMTIAA---HENIISALAQSPVTGMVASASHDSSVKLW  783 (784)
Q Consensus       712 -~~~~~~I~sl~fspdg~~L~s~s~d-g~I~Iwdl~~~~~~~~~~---h~~~V~slafspdg~~LaSgs~DG~V~IW  783 (784)
                       ...-.....+++++++..|+.+... +.|..+|+.......+..   .......|++.. +.++++-...+.|..+
T Consensus       159 ~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~~-~~ly~~d~~~~~V~~~  234 (316)
T 1ijq_A          159 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSA  234 (316)
T ss_dssp             ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEE
T ss_pred             EECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEEC-CEEEEEECCCCeEEEE
Confidence             2334567899999988888777654 689999998654443322   234567788753 4444444445566554

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.37  E-value=0.00024  Score=76.90  Aligned_cols=214  Identities=7%  Similarity=-0.042  Sum_probs=138.7

Q ss_pred             CCceEEEEEcCCCCEEE-EEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEE-EEEeCCCeEEEEcCCCCcce
Q 047260          507 NSKVTCCHFSSDGKLLA-SSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQL-ATASVDKSVRLWDAANPNFC  584 (784)
Q Consensus       507 ~~~V~~l~fspdg~~La-sgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~L-atgs~Dg~I~IWdl~~~~~~  584 (784)
                      ...+..++|++.+..|+ +-...+.|..++++.......+.........+++.+.+..| ++-...+.|.+.+++... .
T Consensus        72 ~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~-~  150 (349)
T 3v64_C           72 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH-R  150 (349)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-C
T ss_pred             CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc-e
Confidence            34588999998655555 44467889999998765444443333456788998755444 555567889999987543 2


Q ss_pred             eeeccCCCCCeEEEEEcCCCCcEEEEEeCC-CeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEEEEC-CCcEEEE
Q 047260          585 SQAYTGHSSPIMSLDFHPKKTDLFCFCDND-NEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLAAAS-DKVVSIF  659 (784)
Q Consensus       585 ~~~~~~h~~~V~sl~~sp~~~~ll~sgs~d-g~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~~s~-Dg~I~Iw  659 (784)
                      .......-.....|+++|.+..++++-... +.|..++++.........   .....++++++++.|+.+.. .+.|..+
T Consensus       151 ~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~  230 (349)
T 3v64_C          151 KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERA  230 (349)
T ss_dssp             EEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             EEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEE
Confidence            222333345678999999887777776666 889999987543333322   34578999998888888876 5789999


Q ss_pred             ECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEeCCCCceEEEeccCCCceEEEE
Q 047260          660 DIETDRQTHSLQGHAELVNYICWDTNGDYLASVS-QNLVKVWSMASGECIQELSSNGNQFHSCV  722 (784)
Q Consensus       660 Dl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgs-dd~I~IwDl~t~~~i~~l~~~~~~I~sl~  722 (784)
                      |+........+.........+++. .+.++++-. .+.|..++..+++.+..+.........++
T Consensus       231 ~~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~  293 (349)
T 3v64_C          231 NLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIH  293 (349)
T ss_dssp             ETTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEECSCSCCCCEE
T ss_pred             eCCCCceEEEEeCCCCCceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEeccCCCCCceEE
Confidence            987543333333334456777773 343333333 33888888777766666654333333333

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.37  E-value=0.00094  Score=73.72  Aligned_cols=226  Identities=8%  Similarity=-0.041  Sum_probs=147.1

Q ss_pred             EEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEE-eCCCeEEEEcCCCCc---ceeeeccCCCCCeE
Q 047260          521 LLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATA-SVDKSVRLWDAANPN---FCSQAYTGHSSPIM  596 (784)
Q Consensus       521 ~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latg-s~Dg~I~IWdl~~~~---~~~~~~~~h~~~V~  596 (784)
                      +|+.+. ...|+..+++.......+ .....+..|+|++.+..|+.+ ...+.|+.+++....   ..............
T Consensus        85 ~ll~~~-~~~I~~i~l~~~~~~~~~-~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~  162 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD  162 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSCSCEEEE-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred             eeEEec-cceeEEEccCCcceeEec-cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence            455444 467999999876554444 345678899999866555555 456889999887521   12222333345678


Q ss_pred             EEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEEEEC--CCcEEEEECCCCeEEEEEe
Q 047260          597 SLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLAAAS--DKVVSIFDIETDRQTHSLQ  671 (784)
Q Consensus       597 sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~~s~--Dg~I~IwDl~t~~~i~~l~  671 (784)
                      .|++.+.+..++++-...+.|.+.+++.........   .....++++|.++.|+.+..  .+.|..+++........+.
T Consensus       163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~  242 (400)
T 3p5b_L          163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT  242 (400)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEEC
T ss_pred             cEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEE
Confidence            899988777788887788999999998654433333   34678999998888887764  3789999987544333333


Q ss_pred             CCCCCEEEEEEcCCCCEEEEEeC--CeEEEEeCCCCceEEEecc--CCCceEEEEEecCCCEEEEEE-CCCeEEEEECCC
Q 047260          672 GHAELVNYICWDTNGDYLASVSQ--NLVKVWSMASGECIQELSS--NGNQFHSCVFHPSYSTLLVVG-GISSLELWNMAE  746 (784)
Q Consensus       672 ~h~~~V~sl~~spdg~~Lasgsd--d~I~IwDl~t~~~i~~l~~--~~~~I~sl~fspdg~~L~s~s-~dg~I~Iwdl~~  746 (784)
                      ..-...+.|++++++..|+.+..  +.|..+|+........+..  .-.....+++.  +..|+.+. ..+.|..+|..+
T Consensus       243 ~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~--~~~lywtd~~~~~V~~~~~~~  320 (400)
T 3p5b_L          243 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLT  320 (400)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE--TTEEEEEESSSCSEEEEESSS
T ss_pred             CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe--CCEEEEecCCCCeEEEEEcCC
Confidence            34457789999988877777663  3899999865433222222  22344566663  33455444 456899998666


Q ss_pred             CceE
Q 047260          747 NKSM  750 (784)
Q Consensus       747 ~~~~  750 (784)
                      ++.+
T Consensus       321 G~~~  324 (400)
T 3p5b_L          321 GSDV  324 (400)
T ss_dssp             CCCC
T ss_pred             CCce
Confidence            6443

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.36  E-value=0.00017  Score=79.34  Aligned_cols=215  Identities=7%  Similarity=-0.046  Sum_probs=139.8

Q ss_pred             CCceEEEEEcCCCCEE-EEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEE-EEEeCCCeEEEEcCCCCcce
Q 047260          507 NSKVTCCHFSSDGKLL-ASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQL-ATASVDKSVRLWDAANPNFC  584 (784)
Q Consensus       507 ~~~V~~l~fspdg~~L-asgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~L-atgs~Dg~I~IWdl~~~~~~  584 (784)
                      ...+..++|++.+..| ++-...+.|..++++.......+.........+++.+.+..| ++-...+.|.+.+++... .
T Consensus       115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~-~  193 (386)
T 3v65_B          115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH-R  193 (386)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCS-C
T ss_pred             CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCc-e
Confidence            4458899999855544 444567889999998765444443333456778888755444 555557789999987543 2


Q ss_pred             eeeccCCCCCeEEEEEcCCCCcEEEEEeCC-CeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEEEEC-CCcEEEE
Q 047260          585 SQAYTGHSSPIMSLDFHPKKTDLFCFCDND-NEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLAAAS-DKVVSIF  659 (784)
Q Consensus       585 ~~~~~~h~~~V~sl~~sp~~~~ll~sgs~d-g~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~~s~-Dg~I~Iw  659 (784)
                      ...+.........|++.|.+..++++-... +.|..++++.........   .....++++++++.|+.+.. .+.|..+
T Consensus       194 ~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~  273 (386)
T 3v65_B          194 KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERA  273 (386)
T ss_dssp             EEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred             EEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEE
Confidence            223333345678999999888777776666 889999987543333322   34578999998888888876 5789999


Q ss_pred             ECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeC-CeEEEEeCCCCceEEEeccCCCceEEEEE
Q 047260          660 DIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQ-NLVKVWSMASGECIQELSSNGNQFHSCVF  723 (784)
Q Consensus       660 Dl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsd-d~I~IwDl~t~~~i~~l~~~~~~I~sl~f  723 (784)
                      |+........+.........|++. .+.++++... +.|..+|..+++.+..+.........+++
T Consensus       274 d~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v  337 (386)
T 3v65_B          274 NLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHT  337 (386)
T ss_dssp             CTTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEECSCSCCCCEEE
T ss_pred             eCCCCeeEEEEECCCCCceEEEEE-CCEEEEeeCCCCeEEEEECCCCcceEEEccCCCCCceEEE
Confidence            987543333333344456777773 3444444333 38888887777766666544333344433

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.35  E-value=9.2e-05  Score=82.71  Aligned_cols=232  Identities=10%  Similarity=0.101  Sum_probs=141.2

Q ss_pred             ceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCC-C----eEEEEcCCCCc
Q 047260          509 KVTCCHFSS-DGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVD-K----SVRLWDAANPN  582 (784)
Q Consensus       509 ~V~~l~fsp-dg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~D-g----~I~IWdl~~~~  582 (784)
                      ....++|+| ++..|+++...+.|+.+|+++....... ........|+|++++++|+++... +    .+.+++.. +.
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~  215 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SG  215 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GT
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-Cc
Confidence            467899998 4556666666588999999876654443 345668899999999977666542 1    23334432 22


Q ss_pred             ce-eeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec----CCeeEEEEecCCCEEEEEEC-CCcE
Q 047260          583 FC-SQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK----GGTAQVRFQPRIGQLLAAAS-DKVV  656 (784)
Q Consensus       583 ~~-~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~----~~v~~v~fsp~~~~Ll~~s~-Dg~I  656 (784)
                      .. ...+. .......++++|++..++++-..++.|..++...........    .....++|+|++++|+++.. .+.|
T Consensus       216 ~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I  294 (430)
T 3tc9_A          216 FKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYI  294 (430)
T ss_dssp             SCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEE
T ss_pred             eeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEE
Confidence            11 11121 123457788999555577777778999999998765422221    23678999999997777665 6889


Q ss_pred             EEEECCC--CeE--EEEEeCC---------------CCCEE-EEEEc--------CCCCEEEEEeCC-eEEEEeCCCCce
Q 047260          657 SIFDIET--DRQ--THSLQGH---------------AELVN-YICWD--------TNGDYLASVSQN-LVKVWSMASGEC  707 (784)
Q Consensus       657 ~IwDl~t--~~~--i~~l~~h---------------~~~V~-sl~~s--------pdg~~Lasgsdd-~I~IwDl~t~~~  707 (784)
                      ..++...  ++.  +..+.+.               -..-. .++..        ++|.++++-..+ .|+.++ .++..
T Consensus       295 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~~G~v  373 (430)
T 3tc9_A          295 LRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-PQGRV  373 (430)
T ss_dssp             EEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-TTSEE
T ss_pred             EEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-CCCcE
Confidence            9987653  222  2222211               01122 45553        345555554433 899888 45543


Q ss_pred             EEEeccC------------------CCceEEEEEecCCCEEEEEEC-CCeEEEEECC
Q 047260          708 IQELSSN------------------GNQFHSCVFHPSYSTLLVVGG-ISSLELWNMA  745 (784)
Q Consensus       708 i~~l~~~------------------~~~I~sl~fspdg~~L~s~s~-dg~I~Iwdl~  745 (784)
                      .... +.                  -.....+++++++..|+++.. ...|+.++++
T Consensus       374 ~~~~-g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          374 TTFA-GRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             EEEE-ECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             EEEE-eCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence            3322 21                  114678999985445555544 4578877754

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.33  E-value=8.5e-05  Score=82.98  Aligned_cols=230  Identities=11%  Similarity=0.080  Sum_probs=136.9

Q ss_pred             CCeEEEEEcc-CCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCC----eEEEEeCCC
Q 047260          550 SVVTDVRFRP-NSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDN----EIQYWSINP  624 (784)
Q Consensus       550 ~~It~i~fsp-dg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg----~I~iwDl~~  624 (784)
                      .....|+|+| ++..|+++...+.|+.+|+.... .. .+.........|+|++++..++++...++    .+.+++...
T Consensus       137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~-v~-~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g  214 (430)
T 3tc9_A          137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEY-VS-TVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRES  214 (430)
T ss_dssp             SCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTE-EE-EEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGG
T ss_pred             CCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCE-EE-EEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCC
Confidence            3557899998 45667776666889999998754 22 22334566889999999986777665333    344444332


Q ss_pred             C-e--eEEeecCCeeEEEEecCCCEEEEEE-CCCcEEEEECCCCeEEEEEeC-CCCCEEEEEEcCCCCEEEEEeC--CeE
Q 047260          625 F-L--CTHITKGGTAQVRFQPRIGQLLAAA-SDKVVSIFDIETDRQTHSLQG-HAELVNYICWDTNGDYLASVSQ--NLV  697 (784)
Q Consensus       625 ~-~--~~~~~~~~v~~v~fsp~~~~Ll~~s-~Dg~I~IwDl~t~~~i~~l~~-h~~~V~sl~~spdg~~Lasgsd--d~I  697 (784)
                      . .  ...........++++|+++.|+++. .++.|..||...+.....+.. .......++|+|+|++|+.+..  +.|
T Consensus       215 ~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I  294 (430)
T 3tc9_A          215 GFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYI  294 (430)
T ss_dssp             TSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEE
T ss_pred             ceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEE
Confidence            1 1  1111234567788999555566555 478999999987754322222 2234678999999996666653  388


Q ss_pred             EEEeCCC--Cce--EEEeccC---------------CCceE-EEEEe--------cCCCEEEEEE-CCCeEEEEECCCCc
Q 047260          698 KVWSMAS--GEC--IQELSSN---------------GNQFH-SCVFH--------PSYSTLLVVG-GISSLELWNMAENK  748 (784)
Q Consensus       698 ~IwDl~t--~~~--i~~l~~~---------------~~~I~-sl~fs--------pdg~~L~s~s-~dg~I~Iwdl~~~~  748 (784)
                      ..++...  +..  +..+.+.               -.... .+++.        +++. |+++. ..+.|+.++. ++.
T Consensus       295 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~-lyvaD~~n~~I~~i~~-~G~  372 (430)
T 3tc9_A          295 LRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYD-FYFCDRENHCIRILTP-QGR  372 (430)
T ss_dssp             EEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEE-EEEEEGGGTEEEEECT-TSE
T ss_pred             EEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCe-EEEEECCCcEEEEECC-CCc
Confidence            8887653  221  2222211               01122 44443        2343 44444 4568988884 455


Q ss_pred             eEEeccc---------C---------CceEEEEEeCCCCEEEEEE-CCCcEEEe
Q 047260          749 SMTIAAH---------E---------NIISALAQSPVTGMVASAS-HDSSVKLW  783 (784)
Q Consensus       749 ~~~~~~h---------~---------~~V~slafspdg~~LaSgs-~DG~V~IW  783 (784)
                      ...+.+.         .         .....|++++++..|+.+. ...+|+.+
T Consensus       373 v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i  426 (430)
T 3tc9_A          373 VTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKI  426 (430)
T ss_dssp             EEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEE
T ss_pred             EEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEE
Confidence            4444322         1         2578999999644455444 45667654

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.28  E-value=0.00099  Score=73.53  Aligned_cols=217  Identities=10%  Similarity=0.004  Sum_probs=142.2

Q ss_pred             EEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC----eeEEeec---CCe
Q 047260          563 QLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPF----LCTHITK---GGT  635 (784)
Q Consensus       563 ~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~----~~~~~~~---~~v  635 (784)
                      +|+.+. ...|+..++..... ... ......+..|+|++.+..++++-...+.|+.++++..    .......   ...
T Consensus        85 ~ll~~~-~~~I~~i~l~~~~~-~~~-~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p  161 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRSEY-TSL-IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP  161 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSCSC-EEE-ECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred             eeEEec-cceeEEEccCCcce-eEe-ccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence            455444 46899999986542 222 2345678899999988878887777889999998752    1222222   456


Q ss_pred             eEEEEecCCCEEEEEEC-CCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--C-CeEEEEeCCCCceEEEe
Q 047260          636 AQVRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVS--Q-NLVKVWSMASGECIQEL  711 (784)
Q Consensus       636 ~~v~fsp~~~~Ll~~s~-Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgs--d-d~I~IwDl~t~~~i~~l  711 (784)
                      ..+++.+.++.|+.+.. .+.|.++|++.......+.........|+++|.+.+|+...  . ..|...++........+
T Consensus       162 ~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~  241 (400)
T 3p5b_L          162 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV  241 (400)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEE
T ss_pred             ccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEE
Confidence            78899987777777665 68999999986655444544455678999999766666554  2 37888888654433333


Q ss_pred             ccCCCceEEEEEecCCCEEEEEECC-CeEEEEECCCCceEEecc---cCCceEEEEEeCCCCEEEEEECCCcEEEe
Q 047260          712 SSNGNQFHSCVFHPSYSTLLVVGGI-SSLELWNMAENKSMTIAA---HENIISALAQSPVTGMVASASHDSSVKLW  783 (784)
Q Consensus       712 ~~~~~~I~sl~fspdg~~L~s~s~d-g~I~Iwdl~~~~~~~~~~---h~~~V~slafspdg~~LaSgs~DG~V~IW  783 (784)
                      ...-.....+++++++..|+.+... +.|..+|+.......+..   ......+|++.. +.++++-...+.|..+
T Consensus       242 ~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~-~~lywtd~~~~~V~~~  316 (400)
T 3p5b_L          242 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSA  316 (400)
T ss_dssp             CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEET-TEEEEEESSSCSEEEE
T ss_pred             ECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEeC-CEEEEecCCCCeEEEE
Confidence            3334567899999988888887654 689999998765543332   234456777642 3344444445566544

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.28  E-value=0.00072  Score=69.79  Aligned_cols=200  Identities=9%  Similarity=0.105  Sum_probs=136.9

Q ss_pred             eEeecCCCceEEEEEcCCCC-EEEEEeCCCeEEEEECCCCceeeecC-CCCCCeEEEEEccCCCEEEEEeCCCeEEEEcC
Q 047260          501 GCIRSRNSKVTCCHFSSDGK-LLASSGHDRKVVLWNMDTLQTESTPE-DHKSVVTDVRFRPNSSQLATASVDKSVRLWDA  578 (784)
Q Consensus       501 ~~l~~H~~~V~~l~fspdg~-~Lasgs~Dg~I~IWd~~t~~~~~~l~-~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl  578 (784)
                      +.+.+-.+.+..++|+|++. ++++...++.|...|.. ++.+..+. .-......|++.+++.++++.-.++.+.++++
T Consensus        20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v   98 (255)
T 3qqz_A           20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL   98 (255)
T ss_dssp             EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred             eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence            45667777899999999766 55567788999999998 88777763 22356788999988877676656788999987


Q ss_pred             CCCcc--eeeec------cCCCCCeEEEEEcCCCCcEEEEEeCCC-eEEEEeC--CC--CeeEEe-------ecCCeeEE
Q 047260          579 ANPNF--CSQAY------TGHSSPIMSLDFHPKKTDLFCFCDNDN-EIQYWSI--NP--FLCTHI-------TKGGTAQV  638 (784)
Q Consensus       579 ~~~~~--~~~~~------~~h~~~V~sl~~sp~~~~ll~sgs~dg-~I~iwDl--~~--~~~~~~-------~~~~v~~v  638 (784)
                      .....  .....      .........|+|+|.+..++++...+. .|+.|+-  ..  ......       .......+
T Consensus        99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l  178 (255)
T 3qqz_A           99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA  178 (255)
T ss_dssp             CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred             CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence            65442  11111      123455789999999887888776655 5666651  11  111111       11356889


Q ss_pred             EEecCCCEEEEEEC-CCcEEEEECCCCeEEEEEeCCC---------CCEEEEEEcCCCCEEEEEeCCeEEEEeC
Q 047260          639 RFQPRIGQLLAAAS-DKVVSIFDIETDRQTHSLQGHA---------ELVNYICWDTNGDYLASVSQNLVKVWSM  702 (784)
Q Consensus       639 ~fsp~~~~Ll~~s~-Dg~I~IwDl~t~~~i~~l~~h~---------~~V~sl~~spdg~~Lasgsdd~I~IwDl  702 (784)
                      +++|..+++++.+. ++.|.++|.. ++.+..+.-..         ..-..|+|+++|++++++..+.++++.-
T Consensus       179 ~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~n~~y~f~~  251 (255)
T 3qqz_A          179 EFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPNRFYRFTP  251 (255)
T ss_dssp             EEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETTTEEEEEEC
T ss_pred             EEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCCceEEEEEe
Confidence            99999888887777 5788889976 44555443221         2568899999999777755557776653

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.25  E-value=0.00027  Score=79.03  Aligned_cols=233  Identities=11%  Similarity=0.084  Sum_probs=139.9

Q ss_pred             CceEEEEEcCC--CCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCC-----eEEEEcCCC
Q 047260          508 SKVTCCHFSSD--GKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDK-----SVRLWDAAN  580 (784)
Q Consensus       508 ~~V~~l~fspd--g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg-----~I~IWdl~~  580 (784)
                      .....++|+|+  +..|+.+...+.|+.+|..++...... ........|+|+++++ |+.+...+     .+...+...
T Consensus       139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~  216 (433)
T 4hw6_A          139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS  216 (433)
T ss_dssp             SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG
T ss_pred             CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC
Confidence            34678999985  445555554488999999877765544 3456689999999999 55444321     233333322


Q ss_pred             CcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCee-EEeec----CCeeEEEEecCCCEEEEEEC-CC
Q 047260          581 PNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLC-THITK----GGTAQVRFQPRIGQLLAAAS-DK  654 (784)
Q Consensus       581 ~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~-~~~~~----~~v~~v~fsp~~~~Ll~~s~-Dg  654 (784)
                      .......+. .-.....++++|++..++++...++.|+.+|..+... .....    .....++|+|++++|+++.. .+
T Consensus       217 ~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~  295 (433)
T 4hw6_A          217 GFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKH  295 (433)
T ss_dssp             TTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTT
T ss_pred             Ceecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCC
Confidence            111001111 2234567889995555777666788999999986544 22211    12246999999997777766 68


Q ss_pred             cEEEEECC--CCeE--EEEEeCC---------------CCCEEEEEE---------cCCCCEEEEEeCC-eEEEEeCCCC
Q 047260          655 VVSIFDIE--TDRQ--THSLQGH---------------AELVNYICW---------DTNGDYLASVSQN-LVKVWSMASG  705 (784)
Q Consensus       655 ~I~IwDl~--t~~~--i~~l~~h---------------~~~V~sl~~---------spdg~~Lasgsdd-~I~IwDl~t~  705 (784)
                      .|..+|..  ++..  ...+.+.               -.....+++         .++|.++++-..+ .|+.++. ++
T Consensus       296 ~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G  374 (433)
T 4hw6_A          296 CIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EG  374 (433)
T ss_dssp             EEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TS
T ss_pred             EEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CC
Confidence            89998865  2321  1222221               123566888         6777766665554 8999985 55


Q ss_pred             ceEEEeccCC------------------CceEEEEEecCCCEEEEEE-CCCeEEEEECC
Q 047260          706 ECIQELSSNG------------------NQFHSCVFHPSYSTLLVVG-GISSLELWNMA  745 (784)
Q Consensus       706 ~~i~~l~~~~------------------~~I~sl~fspdg~~L~s~s-~dg~I~Iwdl~  745 (784)
                      . +.++.+..                  .....++++|....|+++. ..+.|+.++++
T Consensus       375 ~-v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          375 R-VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             E-EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             C-EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence            4 33333221                  2256788884333444444 44577777654

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.25  E-value=0.00055  Score=73.15  Aligned_cols=219  Identities=11%  Similarity=0.004  Sum_probs=138.1

Q ss_pred             EEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe---eEEe-ecCCeeEE
Q 047260          563 QLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFL---CTHI-TKGGTAQV  638 (784)
Q Consensus       563 ~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~---~~~~-~~~~v~~v  638 (784)
                      +|+.+. ...|+.+|++...............+..++|++.+..++.+-...+.|..++++...   .+.. --.....+
T Consensus         6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~gl   84 (318)
T 3sov_A            6 LLLYAN-RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGL   84 (318)
T ss_dssp             EEEEEC-EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEE
T ss_pred             EEEEEc-cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEE
Confidence            344443 467999999875311111111223567899999877788877778999999987652   1111 11456678


Q ss_pred             EEecCCCEEEEEEC-CCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe---CCeEEEEeCCCCceEEEeccC
Q 047260          639 RFQPRIGQLLAAAS-DKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVS---QNLVKVWSMASGECIQELSSN  714 (784)
Q Consensus       639 ~fsp~~~~Ll~~s~-Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgs---dd~I~IwDl~t~~~i~~l~~~  714 (784)
                      ++.+.++.|+.+.. .+.|.++++........+.........++++|.+.+|+.+.   ...|..+++........+...
T Consensus        85 avd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~  164 (318)
T 3sov_A           85 ACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSE  164 (318)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSS
T ss_pred             EEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECC
Confidence            99987777776665 68999999875433333334455678999998766665555   238888887643322222333


Q ss_pred             CCceEEEEEecCCCEEEEEEC-CCeEEEEECCCCceEEec-ccCCceEEEEEeCCCCEEEEEECCCcEEEe
Q 047260          715 GNQFHSCVFHPSYSTLLVVGG-ISSLELWNMAENKSMTIA-AHENIISALAQSPVTGMVASASHDSSVKLW  783 (784)
Q Consensus       715 ~~~I~sl~fspdg~~L~s~s~-dg~I~Iwdl~~~~~~~~~-~h~~~V~slafspdg~~LaSgs~DG~V~IW  783 (784)
                      -...+.+++++++..|+.+.. .+.|..+|+.......+. ........+++.. +.++++-...+.|..+
T Consensus       165 l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~  234 (318)
T 3sov_A          165 IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILAC  234 (318)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEE
T ss_pred             CCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEE
Confidence            345689999998887877765 468999999865444332 2345567777753 3344443344555543

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.24  E-value=0.00029  Score=72.76  Aligned_cols=195  Identities=10%  Similarity=0.071  Sum_probs=129.0

Q ss_pred             eccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec----CCeeEEEEecCCCEEEEEECCCcEEEEECC
Q 047260          587 AYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK----GGTAQVRFQPRIGQLLAAASDKVVSIFDIE  662 (784)
Q Consensus       587 ~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~----~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~  662 (784)
                      .+.+-...+..++|+|++..++++...++.|...|.. ++.+..+.    .....|++.+++.++++.-.++.|.++++.
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~   99 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT   99 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence            4556667899999999988888889999999999998 66665543    356778888877654554457889999886


Q ss_pred             CCeE---EEEEe------CCCCCEEEEEEcCCCCEEEEEeCC---eEEEEeC-CCCceEEEec-------cCCCceEEEE
Q 047260          663 TDRQ---THSLQ------GHAELVNYICWDTNGDYLASVSQN---LVKVWSM-ASGECIQELS-------SNGNQFHSCV  722 (784)
Q Consensus       663 t~~~---i~~l~------~h~~~V~sl~~spdg~~Lasgsdd---~I~IwDl-~t~~~i~~l~-------~~~~~I~sl~  722 (784)
                      ....   +....      ..+.....|+|+|.+..|+++.+.   .|+.|+- .....+..+.       ..-..+..++
T Consensus       100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~  179 (255)
T 3qqz_A          100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE  179 (255)
T ss_dssp             TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred             CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence            5432   22222      133456899999998766666643   4555551 1111222221       1234578999


Q ss_pred             EecCCCEEEEEECC-CeEEEEECCCCceE--Eecc-c------CCceEEEEEeCCCCEEEEEECCCcEEEe
Q 047260          723 FHPSYSTLLVVGGI-SSLELWNMAENKSM--TIAA-H------ENIISALAQSPVTGMVASASHDSSVKLW  783 (784)
Q Consensus       723 fspdg~~L~s~s~d-g~I~Iwdl~~~~~~--~~~~-h------~~~V~slafspdg~~LaSgs~DG~V~IW  783 (784)
                      ++|....+++.+.. ..|.++|.......  .+.. .      -.....|+|.++|+++++ +.-+.+++|
T Consensus       180 ~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f  249 (255)
T 3qqz_A          180 FNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRF  249 (255)
T ss_dssp             EETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEE
T ss_pred             EcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEE
Confidence            99988777766665 57889997755222  2221 1      125689999999985555 666666554

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.22  E-value=0.001  Score=79.84  Aligned_cols=235  Identities=9%  Similarity=-0.029  Sum_probs=149.8

Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEE-EEEeCCCeEEEEcCCCCc---cee
Q 047260          510 VTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQL-ATASVDKSVRLWDAANPN---FCS  585 (784)
Q Consensus       510 V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~L-atgs~Dg~I~IWdl~~~~---~~~  585 (784)
                      -+|.+..+. .+|+.+. ...|+..++........+ .....+..|+|.+....| ++-...+.|+.+++....   ...
T Consensus       387 ~~C~~~~~~-p~Ll~an-~~~Ir~i~l~~~~~~~l~-~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~  463 (791)
T 3m0c_C          387 KACKAVGSI-AYLFFTN-RHEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD  463 (791)
T ss_dssp             CCCEETTSC-CEEEEEC-BSSEEEECTTSCCCEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CE
T ss_pred             ceeeecccc-ccccccc-ccceeEeeccCCcceeee-cCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCccee
Confidence            344444332 2444433 456888888765544444 345667899999855555 454556789999887531   122


Q ss_pred             eeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEEEEC-C-CcEEEEE
Q 047260          586 QAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLAAAS-D-KVVSIFD  660 (784)
Q Consensus       586 ~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~~s~-D-g~I~IwD  660 (784)
                      ..+.........|++.+.+..++++-...+.|.+.+++.........   .....|++.|..++|+.+.. . +.|.+.+
T Consensus       464 ~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~  543 (791)
T 3m0c_C          464 TVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG  543 (791)
T ss_dssp             EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred             EEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEe
Confidence            23332345577899998888788888888999999998654433332   35778999999888888775 2 7899999


Q ss_pred             CCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeC--CeEEEEeCCCCceEEEeccC--CCceEEEEEecCCCEEEEEEC-
Q 047260          661 IETDRQTHSLQGHAELVNYICWDTNGDYLASVSQ--NLVKVWSMASGECIQELSSN--GNQFHSCVFHPSYSTLLVVGG-  735 (784)
Q Consensus       661 l~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsd--d~I~IwDl~t~~~i~~l~~~--~~~I~sl~fspdg~~L~s~s~-  735 (784)
                      +........+...-.....|++++.+..|+.+..  +.|..+++........+...  -.....|++.  +.+|+.+.. 
T Consensus       544 ~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~  621 (791)
T 3m0c_C          544 LNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDII  621 (791)
T ss_dssp             TTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETT
T ss_pred             cCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECC
Confidence            8755444444444467889999987777766653  38999998654443333322  1234456654  346666654 


Q ss_pred             CCeEEEEECCCCce
Q 047260          736 ISSLELWNMAENKS  749 (784)
Q Consensus       736 dg~I~Iwdl~~~~~  749 (784)
                      .+.|...|..+++.
T Consensus       622 ~~~I~~~dk~tG~~  635 (791)
T 3m0c_C          622 NEAIFSANRLTGSD  635 (791)
T ss_dssp             TTEEEEEETTTCCC
T ss_pred             CCEEEEEeCCCCcc
Confidence            46888888766644

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.16  E-value=5.9e-05  Score=90.43  Aligned_cols=188  Identities=12%  Similarity=0.152  Sum_probs=118.4

Q ss_pred             CeEEEEEc-CCCCcEEEEEeCCC----eEEEEeCCCC-eeEE-eecCCeeEEEEecCCCEEEEEECC-----CcEEEEEC
Q 047260          594 PIMSLDFH-PKKTDLFCFCDNDN----EIQYWSINPF-LCTH-ITKGGTAQVRFQPRIGQLLAAASD-----KVVSIFDI  661 (784)
Q Consensus       594 ~V~sl~~s-p~~~~ll~sgs~dg----~I~iwDl~~~-~~~~-~~~~~v~~v~fsp~~~~Ll~~s~D-----g~I~IwDl  661 (784)
                      .+....|+ ||+..++++.+.+|    .|+++|+.++ +.+. .+......+.|+|+++.|+....+     ..|+++++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~l  254 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVM  254 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEET
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEEC
Confidence            57789999 99998877776654    4999999887 5321 112223467899999988887765     36888888


Q ss_pred             CCCe--EEEEEe-CCCCCEEEEEEcCCCCEEEEEe---CC-eEEEEeCCCCc-eE--EEec-cCCCceEEEEEecCCCEE
Q 047260          662 ETDR--QTHSLQ-GHAELVNYICWDTNGDYLASVS---QN-LVKVWSMASGE-CI--QELS-SNGNQFHSCVFHPSYSTL  730 (784)
Q Consensus       662 ~t~~--~i~~l~-~h~~~V~sl~~spdg~~Lasgs---dd-~I~IwDl~t~~-~i--~~l~-~~~~~I~sl~fspdg~~L  730 (784)
                      .++.  ....+. ........+.|+|||++|+..+   .. .|.++|+.++. ..  ..+. .......++.|+. +..|
T Consensus       255 gt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g~~l  333 (751)
T 2xe4_A          255 GKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-TSHL  333 (751)
T ss_dssp             TSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-TTEE
T ss_pred             CCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-CCEE
Confidence            7763  223333 2334567889999999887665   22 79999998762 22  3343 3334455555554 5555


Q ss_pred             EEEEC-C----CeEEEEECCC-CceEE-ecccCC--ceEEEEEeCCCCEEEEEECCCcEEEe
Q 047260          731 LVVGG-I----SSLELWNMAE-NKSMT-IAAHEN--IISALAQSPVTGMVASASHDSSVKLW  783 (784)
Q Consensus       731 ~s~s~-d----g~I~Iwdl~~-~~~~~-~~~h~~--~V~slafspdg~~LaSgs~DG~V~IW  783 (784)
                      +..+. +    ..|.++|+.+ +.... +..|..  .+..+.+. .+.++++...||..+||
T Consensus       334 ~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~  394 (751)
T 2xe4_A          334 VILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIW  394 (751)
T ss_dssp             EEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEE
T ss_pred             EEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEE
Confidence            55443 3    2677788775 23233 444443  45556555 23456666778876654

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.15  E-value=0.00041  Score=77.47  Aligned_cols=229  Identities=14%  Similarity=0.137  Sum_probs=136.1

Q ss_pred             CeEEEEEccC--CCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCC---C-eEEEEeCCC
Q 047260          551 VVTDVRFRPN--SSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDND---N-EIQYWSINP  624 (784)
Q Consensus       551 ~It~i~fspd--g~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~d---g-~I~iwDl~~  624 (784)
                      ....|+|+|+  ...|+.+...+.|+.+|..++. . ..+.........|+|++++. ++++...+   . .+..++...
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~-v-~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~  216 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQY-V-DIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS  216 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTE-E-EEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCE-E-EEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC
Confidence            4578999984  4456666555889999997655 2 23333455689999999998 66655422   1 233333321


Q ss_pred             C-e--eEEeecCCeeEEEEecCCCEEEEEE-CCCcEEEEECCCCeEEEEE-eC-CCCCEEEEEEcCCCCEEEEEeC--Ce
Q 047260          625 F-L--CTHITKGGTAQVRFQPRIGQLLAAA-SDKVVSIFDIETDRQTHSL-QG-HAELVNYICWDTNGDYLASVSQ--NL  696 (784)
Q Consensus       625 ~-~--~~~~~~~~v~~v~fsp~~~~Ll~~s-~Dg~I~IwDl~t~~~i~~l-~~-h~~~V~sl~~spdg~~Lasgsd--d~  696 (784)
                      . .  ...........++++|+.+.|+++. .++.|+.+|..++.....+ .. ....-..++|+|++++|+.+..  +.
T Consensus       217 ~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~  296 (433)
T 4hw6_A          217 GFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHC  296 (433)
T ss_dssp             TTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTE
T ss_pred             CeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCE
Confidence            1 1  1111224456688999555566555 4688999999877653322 21 2223357999999996666653  38


Q ss_pred             EEEEeCC--CCce--EEEeccC---------------CCceEEEEE---------ecCCCEEEEEECCCeEEEEECCCCc
Q 047260          697 VKVWSMA--SGEC--IQELSSN---------------GNQFHSCVF---------HPSYSTLLVVGGISSLELWNMAENK  748 (784)
Q Consensus       697 I~IwDl~--t~~~--i~~l~~~---------------~~~I~sl~f---------spdg~~L~s~s~dg~I~Iwdl~~~~  748 (784)
                      |+.+++.  ++..  ...+.+.               -.....+++         .+++..+++-...+.|+.++. ++.
T Consensus       297 I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~  375 (433)
T 4hw6_A          297 IYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGR  375 (433)
T ss_dssp             EEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSE
T ss_pred             EEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCC
Confidence            9998865  3321  1222211               123466888         556654444445578999985 455


Q ss_pred             eEEeccc------------------CCceEEEEEe-CCCCEEEEEECCCcEEEe
Q 047260          749 SMTIAAH------------------ENIISALAQS-PVTGMVASASHDSSVKLW  783 (784)
Q Consensus       749 ~~~~~~h------------------~~~V~slafs-pdg~~LaSgs~DG~V~IW  783 (784)
                      ..++.+.                  -.....|+++ +++.++++=...++|+.+
T Consensus       376 v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i  429 (433)
T 4hw6_A          376 VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKI  429 (433)
T ss_dssp             EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEE
T ss_pred             EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEE
Confidence            4444321                  1247889999 555555444456677764

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.09  E-value=0.00015  Score=85.39  Aligned_cols=223  Identities=7%  Similarity=-0.011  Sum_probs=128.4

Q ss_pred             EEEEcc-CCCEEEEEeCCC-----------eEEEEcCCCCcceeee-c-cCCCCCeEEEEEcCCCCcEEEEEe-CCCeEE
Q 047260          554 DVRFRP-NSSQLATASVDK-----------SVRLWDAANPNFCSQA-Y-TGHSSPIMSLDFHPKKTDLFCFCD-NDNEIQ  618 (784)
Q Consensus       554 ~i~fsp-dg~~Latgs~Dg-----------~I~IWdl~~~~~~~~~-~-~~h~~~V~sl~~sp~~~~ll~sgs-~dg~I~  618 (784)
                      .+++.+ ++++++.|+.+.           .+.+||..+.+..... . ..+.....++++..++. +++.|+ .+..+.
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~-lyv~GG~~~~~v~  268 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQ-IVVTGGNDAKKTS  268 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSC-EEEECSSSTTCEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCC-EEEeCCCCCCceE
Confidence            566777 888888887643           5889999886632211 1 12333444567777776 666665 556899


Q ss_pred             EEeCCCCeeEEeec----CCeeEEEEecCCCEEEEEE-CC-----CcEEEEECCCCeEEEEE----eCCCCCEEEEEEcC
Q 047260          619 YWSINPFLCTHITK----GGTAQVRFQPRIGQLLAAA-SD-----KVVSIFDIETDRQTHSL----QGHAELVNYICWDT  684 (784)
Q Consensus       619 iwDl~~~~~~~~~~----~~v~~v~fsp~~~~Ll~~s-~D-----g~I~IwDl~t~~~i~~l----~~h~~~V~sl~~sp  684 (784)
                      +||..+........    ..-..+++.++++.+++|+ .+     ..+.+||..+.+-...-    ......-....+..
T Consensus       269 ~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~  348 (656)
T 1k3i_A          269 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS  348 (656)
T ss_dssp             EEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTT
T ss_pred             EecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeec
Confidence            99998765443322    1123455667888888888 34     57999999887533220    00000000011123


Q ss_pred             CCCEEEEE----------eCCeEEEEeCCCCceEEEeccCC---------CceEEEEEec-CCCEEEEEECCC-------
Q 047260          685 NGDYLASV----------SQNLVKVWSMASGECIQELSSNG---------NQFHSCVFHP-SYSTLLVVGGIS-------  737 (784)
Q Consensus       685 dg~~Lasg----------sdd~I~IwDl~t~~~i~~l~~~~---------~~I~sl~fsp-dg~~L~s~s~dg-------  737 (784)
                      ++.+++.+          ..+.+..||..+...........         ..-.++.|.. +++.+++|+.++       
T Consensus       349 ~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~  428 (656)
T 1k3i_A          349 DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDAT  428 (656)
T ss_dssp             TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCC
T ss_pred             CCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcC
Confidence            33333333          23478899998776443332221         1224445544 556666666432       


Q ss_pred             ----eEEEEECCCCceEEec---ccCCce-EEEEEeCCCCEEEEEECC
Q 047260          738 ----SLELWNMAENKSMTIA---AHENII-SALAQSPVTGMVASASHD  777 (784)
Q Consensus       738 ----~I~Iwdl~~~~~~~~~---~h~~~V-~slafspdg~~LaSgs~D  777 (784)
                          .|.+||..+.....+.   .+..+. .+++..+++++++.|+.+
T Consensus       429 ~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~  476 (656)
T 1k3i_A          429 TNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQR  476 (656)
T ss_dssp             CCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBS
T ss_pred             CcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcc
Confidence                6888898887665442   222222 345667899999999864

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.08  E-value=0.00081  Score=72.23  Aligned_cols=192  Identities=12%  Similarity=0.199  Sum_probs=127.7

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccC----CC---EEEEEeC---CCeEEEEcCCCCcceeee
Q 047260          518 DGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPN----SS---QLATASV---DKSVRLWDAANPNFCSQA  587 (784)
Q Consensus       518 dg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspd----g~---~Latgs~---Dg~I~IWdl~~~~~~~~~  587 (784)
                      ...+++.....+-+.|||+ +++.+..+..  +.++.+..-|+    ++   ++++...   +++|++|++......+..
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~  115 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS  115 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence            3445665667788999999 7888888753  56777777663    22   2333333   578999977421212322


Q ss_pred             ccC------CC-CCeEEEEE--cCC-CCcEEEEEeCCCeEEEEeCC-------CCeeEEeec--CCeeEEEEecCCCEEE
Q 047260          588 YTG------HS-SPIMSLDF--HPK-KTDLFCFCDNDNEIQYWSIN-------PFLCTHITK--GGTAQVRFQPRIGQLL  648 (784)
Q Consensus       588 ~~~------h~-~~V~sl~~--sp~-~~~ll~sgs~dg~I~iwDl~-------~~~~~~~~~--~~v~~v~fsp~~~~Ll  648 (784)
                      +..      .. ..+..+|+  ++. +..++++...+|.+..|++.       +.+.++.+.  +.+..+.+.+....|+
T Consensus       116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Ly  195 (355)
T 3amr_A          116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLY  195 (355)
T ss_dssp             CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEE
T ss_pred             ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEE
Confidence            211      11 55677777  664 44567778888999999883       234444443  6677888999999999


Q ss_pred             EEECCCcEEEEECC-----CCeEEEEEe-CC-CCCEEEEEE--cCCCC-EEEEEe--CCeEEEEeCC-CCceEEEec
Q 047260          649 AAASDKVVSIFDIE-----TDRQTHSLQ-GH-AELVNYICW--DTNGD-YLASVS--QNLVKVWSMA-SGECIQELS  712 (784)
Q Consensus       649 ~~s~Dg~I~IwDl~-----t~~~i~~l~-~h-~~~V~sl~~--spdg~-~Lasgs--dd~I~IwDl~-t~~~i~~l~  712 (784)
                      ++-.+.-|..||.+     +.+.+..+. ++ ...+..|++  .++++ ||++++  ++...|||.. +.+.+..|.
T Consensus       196 v~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~  272 (355)
T 3amr_A          196 IAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR  272 (355)
T ss_dssp             EEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred             EecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence            99998778888865     345565543 22 236888887  45556 677666  3499999997 677777775

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.05  E-value=0.00096  Score=75.35  Aligned_cols=239  Identities=10%  Similarity=0.067  Sum_probs=143.8

Q ss_pred             ceEEEEEcC-CCCEEEEE-eCCCeEEEEECCCCceeeecCCC---CCCeEEEEE-------ccCCCEEEEEeCCC-----
Q 047260          509 KVTCCHFSS-DGKLLASS-GHDRKVVLWNMDTLQTESTPEDH---KSVVTDVRF-------RPNSSQLATASVDK-----  571 (784)
Q Consensus       509 ~V~~l~fsp-dg~~Lasg-s~Dg~I~IWd~~t~~~~~~l~~h---~~~It~i~f-------spdg~~Latgs~Dg-----  571 (784)
                      ....|+|+| +...|+++ ...+.|++.|++++.....+...   ......|+|       +++++.|+++...+     
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            467899998 34445444 44467999999887665544322   235899999       99999777776654     


Q ss_pred             --eEEEEcCCC-Cccee----eeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCC-------CCee----------
Q 047260          572 --SVRLWDAAN-PNFCS----QAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSIN-------PFLC----------  627 (784)
Q Consensus       572 --~I~IWdl~~-~~~~~----~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~-------~~~~----------  627 (784)
                        .|.+++... +....    ..+.. -.....++++|++..++++...++.|..+|+.       +...          
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g  298 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN  298 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred             CceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence              255665333 12110    11111 12345778899878788888889999999987       3332          


Q ss_pred             ----EEeec--CCeeEEEEecCCCEEEEEEC-CCcEEEEEC--CCCeE--EEEEeCC---C------------CCEE-EE
Q 047260          628 ----THITK--GGTAQVRFQPRIGQLLAAAS-DKVVSIFDI--ETDRQ--THSLQGH---A------------ELVN-YI  680 (784)
Q Consensus       628 ----~~~~~--~~v~~v~fsp~~~~Ll~~s~-Dg~I~IwDl--~t~~~--i~~l~~h---~------------~~V~-sl  680 (784)
                          +....  .....++|+|+++.|+++.. ...|+.+|.  ..+..  ...+.+.   .            .... .+
T Consensus       299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv  378 (496)
T 3kya_A          299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGV  378 (496)
T ss_dssp             TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEE
T ss_pred             ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEE
Confidence                11121  23578999999997777665 678888665  33322  1222221   1            1233 45


Q ss_pred             EEc-------CCCCEEEEEeCC-eEEEEeCCCCceEEEeccCC------------------------CceEEEEEecCCC
Q 047260          681 CWD-------TNGDYLASVSQN-LVKVWSMASGECIQELSSNG------------------------NQFHSCVFHPSYS  728 (784)
Q Consensus       681 ~~s-------pdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~------------------------~~I~sl~fspdg~  728 (784)
                      +..       +++.++++-..+ .|+.++ .++ .+.++.+..                        .....++++++..
T Consensus       379 ~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G-~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g  456 (496)
T 3kya_A          379 FVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEG-IVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKE  456 (496)
T ss_dssp             EEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTC-BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTT
T ss_pred             EEccccccccCCCeEEEEECCCCEEEEEe-CCC-CEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCC
Confidence            554       455555554444 999998 456 344543221                        2246788888633


Q ss_pred             EEEEEEC-CCeEEEEECCCCceE
Q 047260          729 TLLVVGG-ISSLELWNMAENKSM  750 (784)
Q Consensus       729 ~L~s~s~-dg~I~Iwdl~~~~~~  750 (784)
                      .|+++.. ...|+.+++....+.
T Consensus       457 ~lyVaD~~N~rIrki~~~~~~~~  479 (496)
T 3kya_A          457 MFYVHDQVGHTIRTISMEQEENV  479 (496)
T ss_dssp             EEEEEETTTTEEEEEEECCCC--
T ss_pred             EEEEEeCCCCEEEEEECCCCccc
Confidence            4555544 468888888766544

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.00  E-value=0.0017  Score=73.41  Aligned_cols=230  Identities=15%  Similarity=0.091  Sum_probs=136.1

Q ss_pred             CeEEEEEcc-CCCEEEEEeC-CCeEEEEcCCCCcceeeeccC---CCCCeEEEEE-------cCCCCcEEEEEeCCC---
Q 047260          551 VVTDVRFRP-NSSQLATASV-DKSVRLWDAANPNFCSQAYTG---HSSPIMSLDF-------HPKKTDLFCFCDNDN---  615 (784)
Q Consensus       551 ~It~i~fsp-dg~~Latgs~-Dg~I~IWdl~~~~~~~~~~~~---h~~~V~sl~~-------sp~~~~ll~sgs~dg---  615 (784)
                      ....|+|+| +...|+.+.. .+.|++.|++++. +......   .......|+|       ++++..++++...++   
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~-v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~  218 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRM-LSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGD  218 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTE-EEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCE-EEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcc
Confidence            467899998 3555555544 4678888988755 2222221   2235899999       999987777766552   


Q ss_pred             ---eEEEEeCCC---C------eeEEeecCCeeEEEEecCCCEEEEEEC-CCcEEEEECC-------CCeE---------
Q 047260          616 ---EIQYWSINP---F------LCTHITKGGTAQVRFQPRIGQLLAAAS-DKVVSIFDIE-------TDRQ---------  666 (784)
Q Consensus       616 ---~I~iwDl~~---~------~~~~~~~~~v~~v~fsp~~~~Ll~~s~-Dg~I~IwDl~-------t~~~---------  666 (784)
                         .|.+++...   .      ..+..+ .....++++|+++.|+++.. ++.|..+|+.       ++..         
T Consensus       219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~  297 (496)
T 3kya_A          219 ESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP  297 (496)
T ss_dssp             GEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred             cCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence               366665443   1      122222 34567889997777776665 6889999987       4543         


Q ss_pred             --EEE-Ee-CCCCCEEEEEEcCCCCEEEEEe-CC-eEEEEeCC--CCce--EEEeccC---C------------CceE-E
Q 047260          667 --THS-LQ-GHAELVNYICWDTNGDYLASVS-QN-LVKVWSMA--SGEC--IQELSSN---G------------NQFH-S  720 (784)
Q Consensus       667 --i~~-l~-~h~~~V~sl~~spdg~~Lasgs-dd-~I~IwDl~--t~~~--i~~l~~~---~------------~~I~-s  720 (784)
                        ... +. +.......|+|+|+|++|+.+. .. .|+.++..  .+..  ...+.+.   .            .... .
T Consensus       298 g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~g  377 (496)
T 3kya_A          298 NTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQG  377 (496)
T ss_dssp             TTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEE
T ss_pred             cccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEE
Confidence              112 22 2234467899999999666655 33 88886543  3321  1222211   0            1223 3


Q ss_pred             EEEe-------cCCCEEEEEECCCeEEEEECCCCceEEeccc------------------------CCceEEEEEeCC-C
Q 047260          721 CVFH-------PSYSTLLVVGGISSLELWNMAENKSMTIAAH------------------------ENIISALAQSPV-T  768 (784)
Q Consensus       721 l~fs-------pdg~~L~s~s~dg~I~Iwdl~~~~~~~~~~h------------------------~~~V~slafspd-g  768 (784)
                      ++..       +++.++++=....+|+.++ .++...++.+.                        -.....|+++++ +
T Consensus       378 v~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g  456 (496)
T 3kya_A          378 VFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKE  456 (496)
T ss_dssp             EEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTT
T ss_pred             EEEccccccccCCCeEEEEECCCCEEEEEe-CCCCEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCC
Confidence            4444       3444444444557899998 45555544322                        124678999997 5


Q ss_pred             CEEEEEECCCcEEEe
Q 047260          769 GMVASASHDSSVKLW  783 (784)
Q Consensus       769 ~~LaSgs~DG~V~IW  783 (784)
                      .++++=....+|+.+
T Consensus       457 ~lyVaD~~N~rIrki  471 (496)
T 3kya_A          457 MFYVHDQVGHTIRTI  471 (496)
T ss_dssp             EEEEEETTTTEEEEE
T ss_pred             EEEEEeCCCCEEEEE
Confidence            444444456677765

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.98  E-value=0.0056  Score=73.41  Aligned_cols=214  Identities=10%  Similarity=0.011  Sum_probs=139.2

Q ss_pred             EEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC----eeEEeec---CCe
Q 047260          563 QLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPF----LCTHITK---GGT  635 (784)
Q Consensus       563 ~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~----~~~~~~~---~~v  635 (784)
                      +|+.+ ....|+..++..... ... ......+..|+|++.+..++++-...+.|+.++++..    .....+.   ...
T Consensus       397 ~Ll~a-n~~~Ir~i~l~~~~~-~~l-~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P  473 (791)
T 3m0c_C          397 YLFFT-NRHEVRKMTLDRSEY-TSL-IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP  473 (791)
T ss_dssp             EEEEE-CBSSEEEECTTSCCC-EEE-ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred             ccccc-cccceeEeeccCCcc-eee-ecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCc
Confidence            44444 345688888876542 222 2334568899999977778888777889999998752    2222222   456


Q ss_pred             eEEEEecCCCEEEEEEC-CCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--C-CeEEEEeCCCCceEEEe
Q 047260          636 AQVRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVS--Q-NLVKVWSMASGECIQEL  711 (784)
Q Consensus       636 ~~v~fsp~~~~Ll~~s~-Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgs--d-d~I~IwDl~t~~~i~~l  711 (784)
                      ..|++.+.++.|+++.. .+.|.++++........+.........|+++|.+.+|+...  . ..|.+.++........+
T Consensus       474 ~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv  553 (791)
T 3m0c_C          474 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV  553 (791)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE
T ss_pred             ceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEE
Confidence            78999988888887776 68999999986554444444555688999999766665554  2 47888888654443344


Q ss_pred             ccCCCceEEEEEecCCCEEEEEECC-CeEEEEECCCCceEEecc---cCCceEEEEEeCCCCEEEEEEC-CCcEE
Q 047260          712 SSNGNQFHSCVFHPSYSTLLVVGGI-SSLELWNMAENKSMTIAA---HENIISALAQSPVTGMVASASH-DSSVK  781 (784)
Q Consensus       712 ~~~~~~I~sl~fspdg~~L~s~s~d-g~I~Iwdl~~~~~~~~~~---h~~~V~slafspdg~~LaSgs~-DG~V~  781 (784)
                      ...-.....|++++.+..|+.+... +.|..+++.......+..   .-....+|++.  +..|+.+.. .+.|.
T Consensus       554 ~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~  626 (791)
T 3m0c_C          554 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIF  626 (791)
T ss_dssp             CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEE
T ss_pred             eCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEE
Confidence            4444567899999888888877654 589999997765554432   12334566664  334554443 34443

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.97  E-value=0.0042  Score=66.32  Aligned_cols=228  Identities=11%  Similarity=0.069  Sum_probs=133.7

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecC---CCCCCeEEEEEccCCCEEEEEeCCCeE-EEEcCCCCc
Q 047260          507 NSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPE---DHKSVVTDVRFRPNSSQLATASVDKSV-RLWDAANPN  582 (784)
Q Consensus       507 ~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~---~h~~~It~i~fspdg~~Latgs~Dg~I-~IWdl~~~~  582 (784)
                      ...+.+|.|++ +..++ ++.++.|.. ..+.++.-..+.   .+...+..|.+.+++..++++ .++.| +-.|  .++
T Consensus        79 ~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S~D--gG~  152 (327)
T 2xbg_A           79 DYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRTKD--SGK  152 (327)
T ss_dssp             CCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEESS--TTS
T ss_pred             CccEEEEEecC-CeEEE-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEEcC--CCC
Confidence            34588888976 44444 456665544 333333322222   244567888887777666555 45544 3333  233


Q ss_pred             ceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeC--CCCeeEEe-ecCCeeEEEEecCCCEEEEEECCCcEEEE
Q 047260          583 FCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSI--NPFLCTHI-TKGGTAQVRFQPRIGQLLAAASDKVVSIF  659 (784)
Q Consensus       583 ~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl--~~~~~~~~-~~~~v~~v~fsp~~~~Ll~~s~Dg~I~Iw  659 (784)
                      .-......+...+..+.+.+++. +++++...+..+-+|-  .+...+.. ....+..+.+.+++. +++++.+|.|++.
T Consensus       153 tW~~~~~~~~~~~~~~~~~~~~~-~~~~g~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~-~~~~~~~G~~~~s  230 (327)
T 2xbg_A          153 NWQALVQEAIGVMRNLNRSPSGE-YVAVSSRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGR-LWMIVNGGKIAFS  230 (327)
T ss_dssp             SEEEEECSCCCCEEEEEECTTSC-EEEEETTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSC-EEEEETTTEEEEE
T ss_pred             CCEEeecCCCcceEEEEEcCCCc-EEEEECCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCC-EEEEeCCceEEEe
Confidence            23333345566789999998765 5555544444444443  23333321 234667788888765 5566778888776


Q ss_pred             ECCCCeEEEEEeC----CCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEEEecc---CCCceEEEEEecCCCEEEE
Q 047260          660 DIETDRQTHSLQG----HAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELSS---NGNQFHSCVFHPSYSTLLV  732 (784)
Q Consensus       660 Dl~t~~~i~~l~~----h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~~l~~---~~~~I~sl~fspdg~~L~s  732 (784)
                      +...++....+..    ....+.++.+.+++.+++++.++.| ++....++.-..+..   ....+.++.|.+++ .+++
T Consensus       231 ~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~  308 (327)
T 2xbg_A          231 DPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFI  308 (327)
T ss_dssp             ETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEE
T ss_pred             cCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEE
Confidence            5333433332221    2235889999998998888887766 445555544444432   23567888887554 5778


Q ss_pred             EECCCeEEEEEC
Q 047260          733 VGGISSLELWNM  744 (784)
Q Consensus       733 ~s~dg~I~Iwdl  744 (784)
                      ++.+|.|..++-
T Consensus       309 ~G~~G~i~~~~~  320 (327)
T 2xbg_A          309 LGQKGILLRYVT  320 (327)
T ss_dssp             ECSTTEEEEECC
T ss_pred             EcCCceEEEEcC
Confidence            888898777653

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.95  E-value=0.0077  Score=70.44  Aligned_cols=216  Identities=11%  Similarity=-0.000  Sum_probs=142.6

Q ss_pred             EEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEE
Q 047260          563 QLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVR  639 (784)
Q Consensus       563 ~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~  639 (784)
                      +|+.+ ....|+..|++............-..+..|+|++.+..++++-..++.|..++++.........   .....++
T Consensus         8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlA   86 (628)
T 4a0p_A            8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMA   86 (628)
T ss_dssp             EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEE
T ss_pred             EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEE
Confidence            45544 4578999999865432222222235688999999888788887788999999987643333333   3467899


Q ss_pred             EecCCCEEEEEEC-CCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe---CCeEEEEeCCCCceEEEeccCC
Q 047260          640 FQPRIGQLLAAAS-DKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVS---QNLVKVWSMASGECIQELSSNG  715 (784)
Q Consensus       640 fsp~~~~Ll~~s~-Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgs---dd~I~IwDl~t~~~i~~l~~~~  715 (784)
                      +.+.++.|+.+.. .+.|.+.++........+...-.....|+++|...+|+...   ...|...++........+ ..-
T Consensus        87 vD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~-~~~  165 (628)
T 4a0p_A           87 VDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV-PNV  165 (628)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE-CSC
T ss_pred             EEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEE-CCC
Confidence            9988888877766 68899999875533223333445678999998655555554   237888887654433223 344


Q ss_pred             CceEEEEEecCCCEEEEEECC-CeEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEEC-CCcEEE
Q 047260          716 NQFHSCVFHPSYSTLLVVGGI-SSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASH-DSSVKL  782 (784)
Q Consensus       716 ~~I~sl~fspdg~~L~s~s~d-g~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs~-DG~V~I  782 (784)
                      .....+++++++..|+.+... +.|..+|+.......+........+|++.. + .|+.+.. .+.|..
T Consensus       166 ~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~glav~~-~-~ly~tD~~~~~I~~  232 (628)
T 4a0p_A          166 GRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQ-D-YIYWTDWSRRSIER  232 (628)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECCSCEEEEEEET-T-EEEEEETTTTEEEE
T ss_pred             CCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeeccCCCceEEEEEC-C-EEEEecCCCCEEEE
Confidence            567899999988888777664 689999998765543333444566777765 3 4444443 555554

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.93  E-value=0.046  Score=65.13  Aligned_cols=261  Identities=11%  Similarity=0.079  Sum_probs=154.8

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceee
Q 047260          507 NSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQ  586 (784)
Q Consensus       507 ~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~  586 (784)
                      ...|.++....+| .|.+|+.+| +.+||..+.+...........|.++.. .++ .|..++.+ -|..+|..+......
T Consensus        62 ~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~~~  136 (758)
T 3ott_A           62 NTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLTSF  136 (758)
T ss_dssp             SSCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEEEE
T ss_pred             CceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEEEe
Confidence            4568998887776 566666665 889998875443211122345777754 344 56666666 588888876542211


Q ss_pred             ec--c-CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEee-c-------CCeeEEEEecCCCEEEEEECCCc
Q 047260          587 AY--T-GHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHIT-K-------GGTAQVRFQPRIGQLLAAASDKV  655 (784)
Q Consensus       587 ~~--~-~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~-~-------~~v~~v~fsp~~~~Ll~~s~Dg~  655 (784)
                      ..  . .....|.++....++. +.+ +.. +-|..+|..+....... .       ..+.++....+++.|.+++. +-
T Consensus       137 ~~~~~~l~~~~i~~i~~d~~g~-lWi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~G  212 (758)
T 3ott_A          137 DTRRNGLPNNTIYSIIRTKDNQ-IYV-GTY-NGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GY  212 (758)
T ss_dssp             CHHHHCCSCSCEEEEEECTTCC-EEE-EET-TEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EE
T ss_pred             ccCCCCcCCCeEEEEEEcCCCC-EEE-EeC-CCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CC
Confidence            00  1 1234688888877766 443 343 45778887765443221 1       13667777777777777774 56


Q ss_pred             EEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEEEec-------cCCCceEEEEEecCCC
Q 047260          656 VSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELS-------SNGNQFHSCVFHPSYS  728 (784)
Q Consensus       656 I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~~l~-------~~~~~I~sl~fspdg~  728 (784)
                      |..+|..+++...........|.++....+|.+.+.. ++-|.+++..+++......       .....|.++....++.
T Consensus       213 l~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~  291 (758)
T 3ott_A          213 LFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGT-DNGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHN  291 (758)
T ss_dssp             EEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEE-TTEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCC
T ss_pred             CeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEe-CCceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCC
Confidence            8889988765432211123468888888888877655 5678889987765432211       1234578888777776


Q ss_pred             EEEEEECCCeEEEEECCCCce-EEec-----ccCCceEEEEEeCCCCEEEEEECCCcE
Q 047260          729 TLLVVGGISSLELWNMAENKS-MTIA-----AHENIISALAQSPVTGMVASASHDSSV  780 (784)
Q Consensus       729 ~L~s~s~dg~I~Iwdl~~~~~-~~~~-----~h~~~V~slafspdg~~LaSgs~DG~V  780 (784)
                       |.+|+..| |.++.....-. ....     .....|.++....+|.+.+. +.+|.+
T Consensus       292 -lWiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiG-t~~Gl~  346 (758)
T 3ott_A          292 -IWLGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFG-GANGLI  346 (758)
T ss_dssp             -EEEEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEE-ETTEEE
T ss_pred             -EEEEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEe-eCCcce
Confidence             66666666 55543322111 1111     12346888888777766554 455543

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.89  E-value=0.017  Score=67.53  Aligned_cols=222  Identities=9%  Similarity=-0.012  Sum_probs=147.4

Q ss_pred             EEEEEeCCCeEEEEECCCCceeeecC-CCCCCeEEEEEccCCCEEEE-EeCCCeEEEEcCCCCcceeeeccCCCCCeEEE
Q 047260          521 LLASSGHDRKVVLWNMDTLQTESTPE-DHKSVVTDVRFRPNSSQLAT-ASVDKSVRLWDAANPNFCSQAYTGHSSPIMSL  598 (784)
Q Consensus       521 ~Lasgs~Dg~I~IWd~~t~~~~~~l~-~h~~~It~i~fspdg~~Lat-gs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl  598 (784)
                      +|+.+ ....|+..++++......+. ..-..+..|+|++.+..|+. -..++.|..++++... ....+.........|
T Consensus         8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~-~~~v~~~g~~~P~Gl   85 (628)
T 4a0p_A            8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSA-LEHVVEFGLDYPEGM   85 (628)
T ss_dssp             EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSCCCEE
T ss_pred             EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCC-cEEEEeCCCCCcceE
Confidence            45444 45679999998655433332 22356889999996655554 4557889999887543 222232222456788


Q ss_pred             EEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEee---cCCeeEEEEecCCCEEEEEEC--CCcEEEEECCCCeEEEEEeCC
Q 047260          599 DFHPKKTDLFCFCDNDNEIQYWSINPFLCTHIT---KGGTAQVRFQPRIGQLLAAAS--DKVVSIFDIETDRQTHSLQGH  673 (784)
Q Consensus       599 ~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~---~~~v~~v~fsp~~~~Ll~~s~--Dg~I~IwDl~t~~~i~~l~~h  673 (784)
                      ++.+.+..++++-...+.|.+.+++........   -.....+++.|..+.|+.+..  .+.|...++........+ ..
T Consensus        86 AvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~-~~  164 (628)
T 4a0p_A           86 AVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV-PN  164 (628)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE-CS
T ss_pred             EEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEE-CC
Confidence            888877778888777899999999754332222   245678999998888888764  467888887654333223 34


Q ss_pred             CCCEEEEEEcCCCCEEEEEeC--CeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEEC-CCeEEEEECCCCc
Q 047260          674 AELVNYICWDTNGDYLASVSQ--NLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGG-ISSLELWNMAENK  748 (784)
Q Consensus       674 ~~~V~sl~~spdg~~Lasgsd--d~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~-dg~I~Iwdl~~~~  748 (784)
                      -.....|++++++..|+.+..  +.|..+|+..... ..+.........+++..  ..|+.+.. .+.|...|..+++
T Consensus       165 ~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~--~~ly~tD~~~~~I~~~dk~tg~  239 (628)
T 4a0p_A          165 VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ--DYIYWTDWSRRSIERANKTSGQ  239 (628)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET--TEEEEEETTTTEEEEEETTTCC
T ss_pred             CCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC--CEEEEecCCCCEEEEEECCCCC
Confidence            557789999998777777663  3899999876433 33333334456777765  35655554 5789989876654

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.84  E-value=0.0051  Score=71.83  Aligned_cols=220  Identities=8%  Similarity=0.004  Sum_probs=134.8

Q ss_pred             CCeEEEEECCCCc-eeeecCCCCCCeEEEEEccCCCEEEEEe-CCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCC
Q 047260          528 DRKVVLWNMDTLQ-TESTPEDHKSVVTDVRFRPNSSQLATAS-VDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKT  605 (784)
Q Consensus       528 Dg~I~IWd~~t~~-~~~~l~~h~~~It~i~fspdg~~Latgs-~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~  605 (784)
                      ...|++.++.... ....+...-..+..|+|++.+..|+.+. ..+.|..++++........+...-.....+++.+.+.
T Consensus        17 ~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~   96 (619)
T 3s94_A           17 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE   96 (619)
T ss_dssp             SSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTT
T ss_pred             cccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCC
Confidence            5568888887543 2222223445678999999666666554 4678888888764322223333335688999999888


Q ss_pred             cEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEEEEC--CCcEEEEECCCCeEEEEEeCCCCCEEEE
Q 047260          606 DLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLAAAS--DKVVSIFDIETDRQTHSLQGHAELVNYI  680 (784)
Q Consensus       606 ~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~~s~--Dg~I~IwDl~t~~~i~~l~~h~~~V~sl  680 (784)
                      .++++-...+.|.+.+++.........   .....|++.|.++.|+.+..  .+.|...++........+...-...+.|
T Consensus        97 ~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Gl  176 (619)
T 3s94_A           97 KLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGL  176 (619)
T ss_dssp             EEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEE
T ss_pred             EEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEE
Confidence            788888888999999998654333322   45678999998888887774  3677777776443333333344567899


Q ss_pred             EEcCCCCEEEEEeC--CeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEE-CCCeEEEEECCCCce
Q 047260          681 CWDTNGDYLASVSQ--NLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVG-GISSLELWNMAENKS  749 (784)
Q Consensus       681 ~~spdg~~Lasgsd--d~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s-~dg~I~Iwdl~~~~~  749 (784)
                      ++++++..|+.+..  +.|..+|+........+.........+++..+  .|+.+. ..+.|...|..+++.
T Consensus       177 ald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~  246 (619)
T 3s94_A          177 TLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGEG  246 (619)
T ss_dssp             EEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS--EEEEECTTTCSEEEEESSSCCC
T ss_pred             EEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC--EEEEecCCCCEEEEEECCCCcc
Confidence            99998777766663  38999998654332222212222345666555  555554 346788888876643

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.81  E-value=0.0024  Score=69.03  Aligned_cols=223  Identities=9%  Similarity=0.060  Sum_probs=120.5

Q ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCce--eeec---CCCCCCeEEEEEccC---CCEEEEEeC-C-----C
Q 047260          506 RNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQT--ESTP---EDHKSVVTDVRFRPN---SSQLATASV-D-----K  571 (784)
Q Consensus       506 H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~--~~~l---~~h~~~It~i~fspd---g~~Latgs~-D-----g  571 (784)
                      .-.....++|.|||++++ +..+|.|++++  +++.  +..+   .........|+|+|+   +..|+++.. +     .
T Consensus        29 ~l~~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~  105 (352)
T 2ism_A           29 GLEVPWALAFLPDGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN  105 (352)
T ss_dssp             CCSCEEEEEECTTSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred             CCCCceEEEEcCCCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence            344578999999998555 46679999998  3332  2222   122457899999998   555555543 2     5


Q ss_pred             eEEEEcCCCCc-----ceeeecc---CCCCCeEEEEEcCCCCcEEEEEeC-------------CCeEEEEeCCCC-----
Q 047260          572 SVRLWDAANPN-----FCSQAYT---GHSSPIMSLDFHPKKTDLFCFCDN-------------DNEIQYWSINPF-----  625 (784)
Q Consensus       572 ~I~IWdl~~~~-----~~~~~~~---~h~~~V~sl~~sp~~~~ll~sgs~-------------dg~I~iwDl~~~-----  625 (784)
                      .|..|+.....     .+...+.   +.......|+|.|++. ++++.+.             .|.|.-++.+..     
T Consensus       106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~n  184 (352)
T 2ism_A          106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGN  184 (352)
T ss_dssp             EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTC
T ss_pred             EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCC
Confidence            67778776431     1111122   1112346899999995 5554322             256666665431     


Q ss_pred             ---------eeEEee-cCCeeEEEEecCCCEEEEEEC-CCc--------EEEEECCC----------------CeEEEEE
Q 047260          626 ---------LCTHIT-KGGTAQVRFQPRIGQLLAAAS-DKV--------VSIFDIET----------------DRQTHSL  670 (784)
Q Consensus       626 ---------~~~~~~-~~~v~~v~fsp~~~~Ll~~s~-Dg~--------I~IwDl~t----------------~~~i~~l  670 (784)
                               ..+... -.....++|+|+...|+++.. ...        |.+.....                ..++..+
T Consensus       185 pf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~  264 (352)
T 2ism_A          185 PFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW  264 (352)
T ss_dssp             TTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC
T ss_pred             cccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEec
Confidence                     011111 123456789995555555544 222        33322111                0122223


Q ss_pred             eCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCce------EEEeccCCCceEEEEEecCCCEEEEEE
Q 047260          671 QGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGEC------IQELSSNGNQFHSCVFHPSYSTLLVVG  734 (784)
Q Consensus       671 ~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~------i~~l~~~~~~I~sl~fspdg~~L~s~s  734 (784)
                      . +......++| .+|.++++...+ .|...++.....      ...+......+..+++.|+|..+++..
T Consensus       265 ~-~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          265 P-QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             T-TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred             C-CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence            2 2234566777 456655554444 777777654321      222222335678899999987555543

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.78  E-value=0.00011  Score=87.46  Aligned_cols=221  Identities=8%  Similarity=-0.032  Sum_probs=134.3

Q ss_pred             CCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEe-CCCeEEEEcCCCC---cceeeeccCCCCCeEEEEEcCC
Q 047260          528 DRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATAS-VDKSVRLWDAANP---NFCSQAYTGHSSPIMSLDFHPK  603 (784)
Q Consensus       528 Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs-~Dg~I~IWdl~~~---~~~~~~~~~h~~~V~sl~~sp~  603 (784)
                      .+.|++.++.+......+.. ...+..|+|++.+..|+.+. ..+.|+.+++...   ......+.........|++.+.
T Consensus       385 ~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~  463 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI  463 (699)
T ss_dssp             TTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred             ccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence            45788888887665544433 34567899998766666554 4578999998751   1112222222233566888876


Q ss_pred             CCcEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEEEEC-C-CcEEEEECCCCeEEEEEeCCCCCEE
Q 047260          604 KTDLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLAAAS-D-KVVSIFDIETDRQTHSLQGHAELVN  678 (784)
Q Consensus       604 ~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~~s~-D-g~I~IwDl~t~~~i~~l~~h~~~V~  678 (784)
                      +..++++-...+.|.++++..........   .....+++.|.+++|+.+.. . +.|.++++........+...-...+
T Consensus       464 ~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~Pn  543 (699)
T 1n7d_A          464 HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPN  543 (699)
T ss_dssp             SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCC
T ss_pred             CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCcc
Confidence            66677776677899999988654443333   34567889998777776654 2 6888888764322222222234456


Q ss_pred             EEEEcCCCCEEEEEeC--CeEEEEeCCCCceEEEecc--CCCceEEEEEecCCCEEEEEE-CCCeEEEEECCCCceEE
Q 047260          679 YICWDTNGDYLASVSQ--NLVKVWSMASGECIQELSS--NGNQFHSCVFHPSYSTLLVVG-GISSLELWNMAENKSMT  751 (784)
Q Consensus       679 sl~~spdg~~Lasgsd--d~I~IwDl~t~~~i~~l~~--~~~~I~sl~fspdg~~L~s~s-~dg~I~Iwdl~~~~~~~  751 (784)
                      .|+|++++..|+.+..  +.|.++|+........+..  .......+++..+  .|+.+. ..+.|..++..+++.+.
T Consensus       544 Glavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~--~lywtd~~~~~V~~~d~~~G~~~~  619 (699)
T 1n7d_A          544 GITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED--KVFWTDIINEAIFSANRLTGSDVN  619 (699)
T ss_dssp             CEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT--EEEEECSTTTCEEEEETTTEEEEE
T ss_pred             EEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC--EEEEEeCCCCeEEEEEccCCCceE
Confidence            7999987666655553  3899999865332222221  1123345566544  444444 45789999987776653

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.76  E-value=0.063  Score=63.92  Aligned_cols=258  Identities=11%  Similarity=0.076  Sum_probs=153.2

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeec-CCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCccee
Q 047260          507 NSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTP-EDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCS  585 (784)
Q Consensus       507 ~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l-~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~  585 (784)
                      ...|.||.-..+|. |..|..+| +..||-...+..... ......|.++....++ .|..|+.+| +..||..+.... 
T Consensus        21 ~n~V~~I~qD~~G~-lWigT~~G-L~ryDG~~~~~~~~~~~~~~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~-   95 (758)
T 3ott_A           21 ASVVSCFLQDSEGL-IWIGSNKG-LFSYDGYSTQQHFTYGENNNTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYE-   95 (758)
T ss_dssp             CCCEEEEEECTTSC-EEEEESSC-EEEECSSCEEECSCTTSTTSSCEEEEEEETTT-EEEEEETTE-EEEEETTTTEEC-
T ss_pred             cceEEEEEECCCCC-EEEEECCC-ccccCCCceEEEEccCCCCCceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEE-
Confidence            56799999988885 55567777 667774332211111 1123568888877665 566777665 788998765421 


Q ss_pred             eeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEee-------cCCeeEEEEecCCCEEEEEECCCcEEE
Q 047260          586 QAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHIT-------KGGTAQVRFQPRIGQLLAAASDKVVSI  658 (784)
Q Consensus       586 ~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~-------~~~v~~v~fsp~~~~Ll~~s~Dg~I~I  658 (784)
                      .........|.++.. .++ .+.+ ++.+ .|..+|..+.+.....       ...+.++....++. |.+++.+ -|..
T Consensus        96 ~~~~~~~~~i~~i~~-~~g-~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~-Gl~~  169 (758)
T 3ott_A           96 QPETDFPTDVRTMAL-QGD-TLWL-GALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQ-IYVGTYN-GLCR  169 (758)
T ss_dssp             CCSCCCCSCEEEEEE-ETT-EEEE-EETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCC-EEEEETT-EEEE
T ss_pred             CcccCCCceEEEEEe-cCC-cEEE-EcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCC-EEEEeCC-CHhh
Confidence            111112345777654 343 3444 4444 6888888765443321       13456666666554 5556654 5888


Q ss_pred             EECCCCeEEEEEeC-----CCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEE
Q 047260          659 FDIETDRQTHSLQG-----HAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVV  733 (784)
Q Consensus       659 wDl~t~~~i~~l~~-----h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~  733 (784)
                      ||..+++.......     ....|.++..+.++..|..++++-|..+|..+++...........|.++....++. |.++
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWig  248 (758)
T 3ott_A          170 YIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTEGYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGD-LLAG  248 (758)
T ss_dssp             EETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCC-EEEE
T ss_pred             CccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEECCCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCC-EEEE
Confidence            89877654322111     12248889888877755555555788899887654322111234577887777776 5555


Q ss_pred             ECCCeEEEEECCCCceEEecc--------cCCceEEEEEeCCCCEEEEEECCC
Q 047260          734 GGISSLELWNMAENKSMTIAA--------HENIISALAQSPVTGMVASASHDS  778 (784)
Q Consensus       734 s~dg~I~Iwdl~~~~~~~~~~--------h~~~V~slafspdg~~LaSgs~DG  778 (784)
                      +. +-|.+++..++....+..        ....|.++....++.+.+ |+..|
T Consensus       249 T~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi-GT~~G  299 (758)
T 3ott_A          249 TD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWL-GTDYG  299 (758)
T ss_dssp             ET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEE-EESSS
T ss_pred             eC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEE-EeCCc
Confidence            54 458889887765443321        234588998887776555 44445

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.75  E-value=0.015  Score=62.94  Aligned_cols=225  Identities=9%  Similarity=0.002  Sum_probs=125.5

Q ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-eeeec---CCCCCCeEEEEEccC---CCEEEEEeC----C----
Q 047260          506 RNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQ-TESTP---EDHKSVVTDVRFRPN---SSQLATASV----D----  570 (784)
Q Consensus       506 H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~-~~~~l---~~h~~~It~i~fspd---g~~Latgs~----D----  570 (784)
                      .-.....++|.|||++++ +..+|.|++++. +++ .+..+   .........|+|+|+   +..|+++..    +    
T Consensus        27 ~l~~P~~ia~~pdG~l~V-~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~  104 (354)
T 3a9g_A           27 DLEVPWSIAPLGGGRYLV-TERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIR  104 (354)
T ss_dssp             SCSCEEEEEEEETTEEEE-EETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEE
T ss_pred             CCCCCeEEEEcCCCeEEE-EeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcc
Confidence            345688999999998555 566799999974 444 22222   122356899999997   555555443    2    


Q ss_pred             CeEEEEcCCCC--c----c-eeeecc-CCCCCeEEEEEcCCCCcEEEEEeC-------------CCeEEEEeCCCC----
Q 047260          571 KSVRLWDAANP--N----F-CSQAYT-GHSSPIMSLDFHPKKTDLFCFCDN-------------DNEIQYWSINPF----  625 (784)
Q Consensus       571 g~I~IWdl~~~--~----~-~~~~~~-~h~~~V~sl~~sp~~~~ll~sgs~-------------dg~I~iwDl~~~----  625 (784)
                      ..|..|+....  .    . +...+. ........|.|.|++. ++++.+.             .|.|.-++.+..    
T Consensus       105 ~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~  183 (354)
T 3a9g_A          105 NRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM-LYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPAD  183 (354)
T ss_dssp             EEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC-EEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTT
T ss_pred             eEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc-EEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCC
Confidence            56777776643  1    1 111111 1112346799999986 5544322             245666665432    


Q ss_pred             ------eeEEeecCCeeEEEEecCCCEEEEEECCC----cEEEEECCC----------------CeEEEEEeCCCCCEEE
Q 047260          626 ------LCTHITKGGTAQVRFQPRIGQLLAAASDK----VVSIFDIET----------------DRQTHSLQGHAELVNY  679 (784)
Q Consensus       626 ------~~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg----~I~IwDl~t----------------~~~i~~l~~h~~~V~s  679 (784)
                            +....-......++|+|+...|+++....    .|.+...-.                ..++..+.........
T Consensus       184 npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G  263 (354)
T 3a9g_A          184 NPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSG  263 (354)
T ss_dssp             SSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEE
T ss_pred             CCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcc
Confidence                  11111113456789999555566665421    244332110                0122333112345677


Q ss_pred             EEEc-------CCCCEEEEEeCC-eEEEEeCCCC-ceE--EEec-cCCCceEEEEEecCCCEEEEE
Q 047260          680 ICWD-------TNGDYLASVSQN-LVKVWSMASG-ECI--QELS-SNGNQFHSCVFHPSYSTLLVV  733 (784)
Q Consensus       680 l~~s-------pdg~~Lasgsdd-~I~IwDl~t~-~~i--~~l~-~~~~~I~sl~fspdg~~L~s~  733 (784)
                      ++|.       .+|.++++...+ .|...++... +..  ..+. .....+..+++.|+|..+++.
T Consensus       264 ~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~  329 (354)
T 3a9g_A          264 ASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILIST  329 (354)
T ss_dssp             EEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEE
T ss_pred             eEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEE
Confidence            8883       467666655444 8888888753 322  2332 224568899999999655444

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.74  E-value=0.025  Score=70.68  Aligned_cols=272  Identities=13%  Similarity=0.127  Sum_probs=152.6

Q ss_pred             CCCceEEEEEcCC------CCEEEEEeC-CCeEEEEECCCCceeeecCC-CCCCeEEEEEcc--CCCEEEEEeCCCeEEE
Q 047260          506 RNSKVTCCHFSSD------GKLLASSGH-DRKVVLWNMDTLQTESTPED-HKSVVTDVRFRP--NSSQLATASVDKSVRL  575 (784)
Q Consensus       506 H~~~V~~l~fspd------g~~Lasgs~-Dg~I~IWd~~t~~~~~~l~~-h~~~It~i~fsp--dg~~Latgs~Dg~I~I  575 (784)
                      -.+.|.|+++.+.      ++++|+|.. |++|+|+++.+.+.+....- ......++.+..  ...+|..|-.||.+..
T Consensus       552 l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~  631 (1158)
T 3ei3_A          552 MEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFY  631 (1158)
T ss_dssp             CSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEE
T ss_pred             CCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEE
Confidence            3568999999863      369999996 99999999998776654321 112344444432  3457899999999866


Q ss_pred             EcCC--CCccee--eeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec-CCeeEE-EEecCC--CEE
Q 047260          576 WDAA--NPNFCS--QAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK-GGTAQV-RFQPRI--GQL  647 (784)
Q Consensus       576 Wdl~--~~~~~~--~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~-~~v~~v-~fsp~~--~~L  647 (784)
                      +.++  ++....  ..+.| ..++.-..+...+..-+++++..-.+. |.-+..-...... ..+..+ .|+...  +-+
T Consensus       632 ~~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s~rp~li-y~~~~~l~~s~l~~~~v~~~~~F~se~~~~g~  709 (1158)
T 3ei3_A          632 FGLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACSDRPTVI-YSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSL  709 (1158)
T ss_dssp             EEECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEESSSCEEE-EESSSSEEEEEBSSSCCCEEEEECCSSSTTEE
T ss_pred             EEEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEECCCCEEE-EEcCCceEEeccChHHhceEeccCcccCCCcE
Confidence            6554  333211  12333 345554445444444444444333333 3333222222222 233333 354322  234


Q ss_pred             EEEECCCcEEEEECCCCe--EEEEEeCCCCCEEEEEEcCCCCEEEEEe-C------------------------------
Q 047260          648 LAAASDKVVSIFDIETDR--QTHSLQGHAELVNYICWDTNGDYLASVS-Q------------------------------  694 (784)
Q Consensus       648 l~~s~Dg~I~IwDl~t~~--~i~~l~~h~~~V~sl~~spdg~~Lasgs-d------------------------------  694 (784)
                      + +..++.++|.-+....  .++++. -...+..++++|+.+.++.+. +                              
T Consensus       710 v-~~~~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  787 (1158)
T 3ei3_A          710 A-LANNSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSK  787 (1158)
T ss_dssp             E-EECSSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCC
T ss_pred             E-EEcCCceEEEEecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccc
Confidence            4 4445668888775432  233333 335667777777665443322 0                              


Q ss_pred             -------------------CeEEEEeCCCCceEEEeccCCC-ceEEEEE---ecC-CCEEEEEE----------CCCeEE
Q 047260          695 -------------------NLVKVWSMASGECIQELSSNGN-QFHSCVF---HPS-YSTLLVVG----------GISSLE  740 (784)
Q Consensus       695 -------------------d~I~IwDl~t~~~i~~l~~~~~-~I~sl~f---spd-g~~L~s~s----------~dg~I~  740 (784)
                                         ..|++.|..+.+.+..+.-..+ .+.+++.   ..+ ..+|++|+          ..|.|+
T Consensus       788 ~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~  867 (1158)
T 3ei3_A          788 LFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIV  867 (1158)
T ss_dssp             CC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEE
T ss_pred             cccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEE
Confidence                               1477888888877766653332 3444443   222 46788887          237899


Q ss_pred             EEECCCCceE--EecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          741 LWNMAENKSM--TIAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       741 Iwdl~~~~~~--~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      +|++..++..  .....++.|++++-- .| +|++|- ..+|+|||
T Consensus       868 vf~v~~~kL~lv~~~~v~g~v~al~~~-~g-~Lla~i-g~~l~vy~  910 (1158)
T 3ei3_A          868 VFQYSDGKLQTVAEKEVKGAVYSMVEF-NG-KLLASI-NSTVRLYE  910 (1158)
T ss_dssp             EEEEETTEEEEEEEEEESSCEEEEEEE-TT-EEEEEE-TTEEEEEE
T ss_pred             EEEEECCEEEEEEEEEcCCcCEEEeee-CC-EEEEEc-CCEEEEEE
Confidence            9999755433  333567889998854 34 444443 46788875

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.66  E-value=0.01  Score=64.15  Aligned_cols=219  Identities=13%  Similarity=0.134  Sum_probs=121.3

Q ss_pred             CCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcc-eee---eccCCCCCeEEEEEcCC---CCcEEEEEeCC-----CeE
Q 047260          550 SVVTDVRFRPNSSQLATASVDKSVRLWDAANPNF-CSQ---AYTGHSSPIMSLDFHPK---KTDLFCFCDND-----NEI  617 (784)
Q Consensus       550 ~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~-~~~---~~~~h~~~V~sl~~sp~---~~~ll~sgs~d-----g~I  617 (784)
                      .....|+|.|++++++ +..+|.|++++  ++.. ...   .+.........|+|+|+   +..++++....     +.|
T Consensus        31 ~~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v  107 (352)
T 2ism_A           31 EVPWALAFLPDGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV  107 (352)
T ss_dssp             SCEEEEEECTTSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred             CCceEEEEcCCCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence            3567999999998554 45679999998  3331 111   11122356889999998   55566655433     678


Q ss_pred             EEEeCCCC-----eeE-Eeec------CCeeEEEEecCCCEEEEEEC-------------CCcEEEEECCCC--------
Q 047260          618 QYWSINPF-----LCT-HITK------GGTAQVRFQPRIGQLLAAAS-------------DKVVSIFDIETD--------  664 (784)
Q Consensus       618 ~iwDl~~~-----~~~-~~~~------~~v~~v~fsp~~~~Ll~~s~-------------Dg~I~IwDl~t~--------  664 (784)
                      ..|+....     +.+ ..+.      .....++|.|++..+++.+.             .+.|.-+|....        
T Consensus       108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~  187 (352)
T 2ism_A          108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFL  187 (352)
T ss_dssp             EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTT
T ss_pred             EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCccc
Confidence            88887642     111 1122      12357899999865554332             145666665420        


Q ss_pred             -----e-EEEEEeCCCCCEEEEEEcC-CCCEEEEEeCC-e--------EEEEeCCC----------------CceEEEec
Q 047260          665 -----R-QTHSLQGHAELVNYICWDT-NGDYLASVSQN-L--------VKVWSMAS----------------GECIQELS  712 (784)
Q Consensus       665 -----~-~i~~l~~h~~~V~sl~~sp-dg~~Lasgsdd-~--------I~IwDl~t----------------~~~i~~l~  712 (784)
                           . .+. -.++ .....++|+| ++.++++-... .        |.+.....                ..++..+.
T Consensus       188 ~~~~~~~~i~-a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~  265 (352)
T 2ism_A          188 GRRGARPEVY-SLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWP  265 (352)
T ss_dssp             TCTTSCTTEE-EECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT
T ss_pred             CCCCCCccEE-EEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecC
Confidence                 0 111 1122 2346689999 67766654322 3        33332111                01222332


Q ss_pred             cCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCc-------eEEecccCCceEEEEEeCCCCEEEEEE
Q 047260          713 SNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENK-------SMTIAAHENIISALAQSPVTGMVASAS  775 (784)
Q Consensus       713 ~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~-------~~~~~~h~~~V~slafspdg~~LaSgs  775 (784)
                       +......++| .++..+++.-..+.|...++....       ...+..-...+..+++.|||.++++..
T Consensus       266 -~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          266 -QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             -TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred             -CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence             2234466777 355544444445678877776443       122223346799999999998777664

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.65  E-value=0.0079  Score=64.56  Aligned_cols=185  Identities=11%  Similarity=0.173  Sum_probs=119.9

Q ss_pred             CCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCC----CC---cEEEEEeC--CCeEEEEeCC--CCeeE
Q 047260          560 NSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPK----KT---DLFCFCDN--DNEIQYWSIN--PFLCT  628 (784)
Q Consensus       560 dg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~----~~---~ll~sgs~--dg~I~iwDl~--~~~~~  628 (784)
                      ...+++....++-+.+||+ +++ .+..+..  +.+..+..-|.    +.   ..+++...  ++.|.+|+++  +.. +
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~-~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l  113 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGK-MLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-L  113 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSC-EEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-E
T ss_pred             CccEEEEEcCCCCEEEEcC-CCc-EEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-e
Confidence            3456777778889999999 555 3444432  56777776663    11   12344444  5899999774  222 2


Q ss_pred             Eeec----------CCeeEEEE--ecCCC--EEEEEECCCcEEEEECC-------CCeEEEEEeCCCCCEEEEEEcCCCC
Q 047260          629 HITK----------GGTAQVRF--QPRIG--QLLAAASDKVVSIFDIE-------TDRQTHSLQGHAELVNYICWDTNGD  687 (784)
Q Consensus       629 ~~~~----------~~v~~v~f--sp~~~--~Ll~~s~Dg~I~IwDl~-------t~~~i~~l~~h~~~V~sl~~spdg~  687 (784)
                      ....          ..+..+|+  ++..+  ++++...+|.+..|++.       +.+.++.|.. .+.+..+..++...
T Consensus       114 ~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g  192 (355)
T 3amr_A          114 QSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYG  192 (355)
T ss_dssp             EECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTT
T ss_pred             eeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCC
Confidence            2221          33445666  66544  57777889999999882       3466777764 45778888888888


Q ss_pred             EEEEEeCC-eEEEEeCC-----CCceEEEec-cC-CCceEEEEE--ecCCC-EEEEEE-CCCeEEEEECC-CCceE
Q 047260          688 YLASVSQN-LVKVWSMA-----SGECIQELS-SN-GNQFHSCVF--HPSYS-TLLVVG-GISSLELWNMA-ENKSM  750 (784)
Q Consensus       688 ~Lasgsdd-~I~IwDl~-----t~~~i~~l~-~~-~~~I~sl~f--spdg~-~L~s~s-~dg~I~Iwdl~-~~~~~  750 (784)
                      .|+.+.++ .|..|+.+     +++.+..+. .+ ...+..+++  .++++ +|++++ .++++.+||.. +.+.+
T Consensus       193 ~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~v  268 (355)
T 3amr_A          193 RLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYV  268 (355)
T ss_dssp             EEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEE
T ss_pred             eEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEE
Confidence            89999887 66666654     345565553 21 236788877  45555 677777 46799999997 45544

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.62  E-value=0.012  Score=63.56  Aligned_cols=194  Identities=11%  Similarity=0.095  Sum_probs=117.7

Q ss_pred             CceEEEEEcCCCCEEEEEe------------CCCeEEEEECCC--Ccee-eecCC-----CCCCeEEEEEcc--CCC-EE
Q 047260          508 SKVTCCHFSSDGKLLASSG------------HDRKVVLWNMDT--LQTE-STPED-----HKSVVTDVRFRP--NSS-QL  564 (784)
Q Consensus       508 ~~V~~l~fspdg~~Lasgs------------~Dg~I~IWd~~t--~~~~-~~l~~-----h~~~It~i~fsp--dg~-~L  564 (784)
                      ...-++++.|+|..+++++            .+|.|.++|.++  .+.. ..+.+     .......|.+.+  ++. +|
T Consensus        50 ~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L  129 (355)
T 3sre_A           50 NGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL  129 (355)
T ss_dssp             SCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred             CCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence            3455667788876555542            689999999873  2221 11212     224567777766  354 45


Q ss_pred             EEEeC---CCeEEEEcCCCCcce---eeeccC-CCCCeEEEEEcCCCCcEEEEEe-----------------CCCeEEEE
Q 047260          565 ATASV---DKSVRLWDAANPNFC---SQAYTG-HSSPIMSLDFHPKKTDLFCFCD-----------------NDNEIQYW  620 (784)
Q Consensus       565 atgs~---Dg~I~IWdl~~~~~~---~~~~~~-h~~~V~sl~~sp~~~~ll~sgs-----------------~dg~I~iw  620 (784)
                      +++..   +.+|.||+++.....   ...+.+ .-.....+.+.+++. ++++..                 ..|.|..+
T Consensus       130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~-fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~  208 (355)
T 3sre_A          130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVTYY  208 (355)
T ss_dssp             EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCSSHHHHHHHHHTTCCCEEEEEE
T ss_pred             EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCC-EEecCCcEeCCcccccchhhccCCccEEEEE
Confidence            55432   467888887654322   222222 124578899999886 444443                 12556666


Q ss_pred             eCCCCeeEEeecCCeeEEEEecCCCEEEEEEC-CCcEEEEECCC-Ce--EEEEEeCCCCCEEEEEEcC-CCCEEEEEe-C
Q 047260          621 SINPFLCTHITKGGTAQVRFQPRIGQLLAAAS-DKVVSIFDIET-DR--QTHSLQGHAELVNYICWDT-NGDYLASVS-Q  694 (784)
Q Consensus       621 Dl~~~~~~~~~~~~v~~v~fsp~~~~Ll~~s~-Dg~I~IwDl~t-~~--~i~~l~~h~~~V~sl~~sp-dg~~Lasgs-d  694 (784)
                      |....+.+..--...+.++|+|+++.++++.. .+.|..||+.. ++  ....+ ........+++++ +|++.+++. +
T Consensus       209 d~~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~  287 (355)
T 3sre_A          209 SPNDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPN  287 (355)
T ss_dssp             CTTCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESC
T ss_pred             ECCeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCC
Confidence            66433333222356688999999999888876 68999999863 32  22334 2345677899999 599888775 3


Q ss_pred             C-eEEEEeCC
Q 047260          695 N-LVKVWSMA  703 (784)
Q Consensus       695 d-~I~IwDl~  703 (784)
                      + .|..||..
T Consensus       288 g~~v~~~~P~  297 (355)
T 3sre_A          288 GMRIFFYDAE  297 (355)
T ss_dssp             HHHHHSCCTT
T ss_pred             ceEEEEECCC
Confidence            3 55555544

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.62  E-value=0.00013  Score=86.69  Aligned_cols=214  Identities=11%  Similarity=0.009  Sum_probs=127.3

Q ss_pred             CceEEEEEcCCCCEEEEEe-CCCeEEEEECCC----CceeeecCCCCCCeEEEEEccC-CCEEEEEeCCCeEEEEcCCCC
Q 047260          508 SKVTCCHFSSDGKLLASSG-HDRKVVLWNMDT----LQTESTPEDHKSVVTDVRFRPN-SSQLATASVDKSVRLWDAANP  581 (784)
Q Consensus       508 ~~V~~l~fspdg~~Lasgs-~Dg~I~IWd~~t----~~~~~~l~~h~~~It~i~fspd-g~~Latgs~Dg~I~IWdl~~~  581 (784)
                      ..+..++|++.+..|+.+. ..+.|+.+++..    ......+.........|++.+. ++++++-...+.|.++++...
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~  485 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  485 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence            4567889998766665554 457899999875    2222222222234556788754 444455456788999998764


Q ss_pred             cceeeeccCCCCCeEEEEEcCCCCcEEEEEeCC-CeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEEEEC-CCcE
Q 047260          582 NFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDND-NEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLAAAS-DKVV  656 (784)
Q Consensus       582 ~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~d-g~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~~s~-Dg~I  656 (784)
                      . ....+.........|++.|.+..++++-... +.|.++++..........   .....|+|+++++.|+++.. .+.|
T Consensus       486 ~-~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I  564 (699)
T 1n7d_A          486 K-RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI  564 (699)
T ss_dssp             C-EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEE
T ss_pred             c-eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeE
Confidence            3 2222322234567889999777666655333 788888876433222221   34567999998888777766 5789


Q ss_pred             EEEECCCCeEEEEEe--CCCCCEEEEEEcCCCCEEEEEeC-CeEEEEeCCCCceEEEeccCCCceEEEEE
Q 047260          657 SIFDIETDRQTHSLQ--GHAELVNYICWDTNGDYLASVSQ-NLVKVWSMASGECIQELSSNGNQFHSCVF  723 (784)
Q Consensus       657 ~IwDl~t~~~i~~l~--~h~~~V~sl~~spdg~~Lasgsd-d~I~IwDl~t~~~i~~l~~~~~~I~sl~f  723 (784)
                      .++|+........+.  ........|++..+ .++++... +.|..+|..+++.+..+.........|++
T Consensus       565 ~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~~~~~~P~~i~v  633 (699)
T 1n7d_A          565 SSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVL  633 (699)
T ss_dssp             EEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCCTTCSSCCCCCB
T ss_pred             EEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEeecCCCCCcEEEE
Confidence            999987533222222  11122344555544 33333333 38999998888887777544333444443

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.62  E-value=0.078  Score=66.18  Aligned_cols=225  Identities=11%  Similarity=0.054  Sum_probs=132.0

Q ss_pred             EEEEccC--CCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeC------------------
Q 047260          554 DVRFRPN--SSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDN------------------  613 (784)
Q Consensus       554 ~i~fspd--g~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~------------------  613 (784)
                      ...|+..  ..-++..+ ++.++|..+++..........-...+..++++|....+++.++.                  
T Consensus       697 ~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  775 (1158)
T 3ei3_A          697 MCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSAS  775 (1158)
T ss_dssp             EEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHH
T ss_pred             EeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhh
Confidence            3455432  23344443 45688888765332222222234568888888877655444321                  


Q ss_pred             ------------------------------CCeEEEEeCCCCeeEEeec----CCeeEEE---EecC-CCEEEEEE----
Q 047260          614 ------------------------------DNEIQYWSINPFLCTHITK----GGTAQVR---FQPR-IGQLLAAA----  651 (784)
Q Consensus       614 ------------------------------dg~I~iwDl~~~~~~~~~~----~~v~~v~---fsp~-~~~Ll~~s----  651 (784)
                                                    -+.|++.|..+.+.+..+.    ..+.+++   |..+ ..++++|+    
T Consensus       776 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~  855 (1158)
T 3ei3_A          776 TQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVY  855 (1158)
T ss_dssp             HHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECC
T ss_pred             hhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecC
Confidence                                          1246677776666555443    2234443   3222 36777776    


Q ss_pred             ------CCCcEEEEECCCCeEEEEE-eCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEE-EeccCCCceEEEEE
Q 047260          652 ------SDKVVSIFDIETDRQTHSL-QGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQ-ELSSNGNQFHSCVF  723 (784)
Q Consensus       652 ------~Dg~I~IwDl~t~~~i~~l-~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~-~l~~~~~~I~sl~f  723 (784)
                            ..|.|++|++..++..... ...+++|++++-- +| +|+++-..+|+||++...+.+. ..... ..|..+..
T Consensus       856 ~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g-~Lla~ig~~l~vy~l~~~~~L~~~~~~~-~~i~~~~l  932 (1158)
T 3ei3_A          856 PEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NG-KLLASINSTVRLYEWTTEKELRTECNHY-NNIMALYL  932 (1158)
T ss_dssp             TTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TT-EEEEEETTEEEEEEECTTSCEEEEEEEC-CCSCEEEE
T ss_pred             CCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CC-EEEEEcCCEEEEEECCCCceEEEEeecc-ccEEEEEE
Confidence                  2478999998754332221 1246788888744 34 6666667799999998765444 11112 12333334


Q ss_pred             ecCCCEEEEEECCCeEEEE--ECCCCceEEec--ccCCceEEEEEeCCCCEEEEEECCCcEEEe
Q 047260          724 HPSYSTLLVVGGISSLELW--NMAENKSMTIA--AHENIISALAQSPVTGMVASASHDSSVKLW  783 (784)
Q Consensus       724 spdg~~L~s~s~dg~I~Iw--dl~~~~~~~~~--~h~~~V~slafspdg~~LaSgs~DG~V~IW  783 (784)
                      ...+.+|++|..-..|.++  +...++...+.  .+...++++.|-.+ ..++.+..+|.|.+.
T Consensus       933 ~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~-~t~l~aD~~gNl~vl  995 (1158)
T 3ei3_A          933 KTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDD-DNFLGAENAFNLFVC  995 (1158)
T ss_dssp             EEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEET-TEEEEEETTSEEEEE
T ss_pred             eccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEcc-CcEEEEcCCCcEEEE
Confidence            3456789999888776665  55555544443  35567888888755 477778999998875

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.57  E-value=0.12  Score=60.32  Aligned_cols=225  Identities=8%  Similarity=0.010  Sum_probs=139.3

Q ss_pred             EEEEEeCCCeEEEEECCCCceee-ecC-CCCCCeEEEEEccCCCEEEEE-eCCCeEEEEcCCCCcceeeeccCCCCCeEE
Q 047260          521 LLASSGHDRKVVLWNMDTLQTES-TPE-DHKSVVTDVRFRPNSSQLATA-SVDKSVRLWDAANPNFCSQAYTGHSSPIMS  597 (784)
Q Consensus       521 ~Lasgs~Dg~I~IWd~~t~~~~~-~l~-~h~~~It~i~fspdg~~Latg-s~Dg~I~IWdl~~~~~~~~~~~~h~~~V~s  597 (784)
                      +|+.+. .+.|+..++....... .+. ..-..+..|+|.+.+..|+.+ ...+.|+.++++... ........-..+..
T Consensus       319 ~Ll~~~-~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~-~~~v~~~~~~~p~G  396 (619)
T 3s94_A          319 LLLLAR-RTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSG-SQFVVTAQIAHPDG  396 (619)
T ss_dssp             EEEEEE-SSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSCCCE
T ss_pred             EEEEEc-ccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCc-cEEEEECCCCCcCc
Confidence            444443 4568888887543211 111 223457899999855555554 457889999987643 22223333345678


Q ss_pred             EEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEEEEC--CCcEEEEECCCCeEEEEEeC
Q 047260          598 LDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLAAAS--DKVVSIFDIETDRQTHSLQG  672 (784)
Q Consensus       598 l~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~~s~--Dg~I~IwDl~t~~~i~~l~~  672 (784)
                      +++...+..++++-...+.|.+.+++.........   .....+++.|..+.|+.+..  ...|...++...........
T Consensus       397 lAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~  476 (619)
T 3s94_A          397 IAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNT  476 (619)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECS
T ss_pred             eEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeC
Confidence            89987777788887788999999988654333322   45688999998778877764  36777777764333222333


Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCC--eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECC-CeEEEEECCCCce
Q 047260          673 HAELVNYICWDTNGDYLASVSQN--LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGI-SSLELWNMAENKS  749 (784)
Q Consensus       673 h~~~V~sl~~spdg~~Lasgsdd--~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~d-g~I~Iwdl~~~~~  749 (784)
                      .-...+.|++++++..|+.+..+  .|..+++........+...-.....+++..+  +|+.+... +.|...|..++..
T Consensus       477 ~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~l~~P~glav~~~--~ly~tD~~~~~I~~~~k~~g~~  554 (619)
T 3s94_A          477 SLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTLLGD--YVYWTDWQRRSIERVHKRSAER  554 (619)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEECCCCSSCCEEEETT--EEEEECTTSSCEEEEESSSCCE
T ss_pred             CCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceEEEeccCCCCcEEEEEECC--EEEEeecCCCeEEEEEcCCCce
Confidence            44577899999877777766633  8999998644322222222223345666544  56555543 5677777766643

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.56  E-value=0.0082  Score=62.61  Aligned_cols=225  Identities=12%  Similarity=0.037  Sum_probs=114.5

Q ss_pred             CCCEEEEEe-CC-----CeEEEEECCCCceeee--cCCCCCCeEEEEEccCCCEEEEEeCC-----CeEEEEcCCCCc--
Q 047260          518 DGKLLASSG-HD-----RKVVLWNMDTLQTEST--PEDHKSVVTDVRFRPNSSQLATASVD-----KSVRLWDAANPN--  582 (784)
Q Consensus       518 dg~~Lasgs-~D-----g~I~IWd~~t~~~~~~--l~~h~~~It~i~fspdg~~Latgs~D-----g~I~IWdl~~~~--  582 (784)
                      ++.+++.|+ .+     ..+.+||..+.+-...  +.........+.  -++.+++.|+.+     ..+.+||+.+..  
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~   91 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADEDG   91 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence            445666666 33     3688999887653322  211111222222  256777777765     468899988765  


Q ss_pred             -ceee-eccCCCCCeEEEEEcCCCCcEEEEEeCC-----CeEEEEeCCCCeeEEeec--CC-eeEEEEecCCCEEEEEEC
Q 047260          583 -FCSQ-AYTGHSSPIMSLDFHPKKTDLFCFCDND-----NEIQYWSINPFLCTHITK--GG-TAQVRFQPRIGQLLAAAS  652 (784)
Q Consensus       583 -~~~~-~~~~h~~~V~sl~~sp~~~~ll~sgs~d-----g~I~iwDl~~~~~~~~~~--~~-v~~v~fsp~~~~Ll~~s~  652 (784)
                       .... .+.........+.+  + ..+++.|+.+     ..+.+||+.+.+-.....  .. ....+...++..++.|+.
T Consensus        92 ~W~~~~~~p~~r~~~~~~~~--~-~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~  168 (301)
T 2vpj_A           92 VWYSVAPMNVRRGLAGATTL--G-DMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGY  168 (301)
T ss_dssp             CCEEECCCSSCCBSCEEEEE--T-TEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCB
T ss_pred             eeEECCCCCCCccceeEEEE--C-CEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCC
Confidence             3221 11111111222222  3 4467666543     368899987755433221  11 111112225555566554


Q ss_pred             C-----CcEEEEECCCCeEEEE--EeCCCCCEEEEEEcCCCCEEEEEeC------CeEEEEeCCCCceEEEeccCCCc-e
Q 047260          653 D-----KVVSIFDIETDRQTHS--LQGHAELVNYICWDTNGDYLASVSQ------NLVKVWSMASGECIQELSSNGNQ-F  718 (784)
Q Consensus       653 D-----g~I~IwDl~t~~~i~~--l~~h~~~V~sl~~spdg~~Lasgsd------d~I~IwDl~t~~~i~~l~~~~~~-I  718 (784)
                      +     ..+.+||+.+.+-...  +.........+.+  ++++++.|+.      +.|.+||+.+.+-...-...... -
T Consensus       169 ~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~  246 (301)
T 2vpj_A          169 DGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCY  246 (301)
T ss_dssp             CSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBS
T ss_pred             CCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccc
Confidence            3     5689999987753322  1111111222222  5666666552      36899999887543322111111 1


Q ss_pred             EEEEEecCCCEEEEEECC-----CeEEEEECCCCceE
Q 047260          719 HSCVFHPSYSTLLVVGGI-----SSLELWNMAENKSM  750 (784)
Q Consensus       719 ~sl~fspdg~~L~s~s~d-----g~I~Iwdl~~~~~~  750 (784)
                      .+++.. ++..++.|+.+     ..|.+||+.+.+-.
T Consensus       247 ~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~  282 (301)
T 2vpj_A          247 VGATVL-RGRLYAIAGYDGNSLLSSIECYDPIIDSWE  282 (301)
T ss_dssp             CEEEEE-TTEEEEECCBCSSSBEEEEEEEETTTTEEE
T ss_pred             eeEEEE-CCEEEEEcCcCCCcccccEEEEcCCCCeEE
Confidence            222222 55566666654     36889999887654

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.56  E-value=0.028  Score=60.66  Aligned_cols=222  Identities=14%  Similarity=0.103  Sum_probs=126.0

Q ss_pred             CCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeec---cCCCCCeEEEEEcCC---CCcEEEEEeC---C----Ce
Q 047260          550 SVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAY---TGHSSPIMSLDFHPK---KTDLFCFCDN---D----NE  616 (784)
Q Consensus       550 ~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~---~~h~~~V~sl~~sp~---~~~ll~sgs~---d----g~  616 (784)
                      .....|+|.|+++ |+++..+|.|+++|. ++...+..+   .........|+|+|+   +..++++...   +    ..
T Consensus        29 ~~P~~ia~~pdG~-l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~  106 (354)
T 3a9g_A           29 EVPWSIAPLGGGR-YLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR  106 (354)
T ss_dssp             SCEEEEEEEETTE-EEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred             CCCeEEEEcCCCe-EEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence            4568899999997 555566799999974 333122111   122346889999997   5556655442   3    56


Q ss_pred             EEEEeCCCC-------eeE-Eeec----CCeeEEEEecCCCEEEEEEC-------------CCcEEEEECCCC-------
Q 047260          617 IQYWSINPF-------LCT-HITK----GGTAQVRFQPRIGQLLAAAS-------------DKVVSIFDIETD-------  664 (784)
Q Consensus       617 I~iwDl~~~-------~~~-~~~~----~~v~~v~fsp~~~~Ll~~s~-------------Dg~I~IwDl~t~-------  664 (784)
                      |..|+....       +.+ ..+.    .....+.|.|++..+++.+.             .|.|.-+|....       
T Consensus       107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf  186 (354)
T 3a9g_A          107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPF  186 (354)
T ss_dssp             EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSS
T ss_pred             EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCC
Confidence            777776543       111 1111    12456899999875555432             145655555421       


Q ss_pred             --eEEEEEeCCCCCEEEEEEcC-CCCEEEEEeC----CeEEEEeCCC--------C--------ceEEEeccCCCceEEE
Q 047260          665 --RQTHSLQGHAELVNYICWDT-NGDYLASVSQ----NLVKVWSMAS--------G--------ECIQELSSNGNQFHSC  721 (784)
Q Consensus       665 --~~i~~l~~h~~~V~sl~~sp-dg~~Lasgsd----d~I~IwDl~t--------~--------~~i~~l~~~~~~I~sl  721 (784)
                        ..+. -.++. ....++|+| ++.++++-..    +.|.+.....        +        .++..+.........+
T Consensus       187 ~~~~i~-a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~  264 (354)
T 3a9g_A          187 PNSPIW-SYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGA  264 (354)
T ss_dssp             TTCCEE-EECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEE
T ss_pred             CCCcEE-EEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcce
Confidence              0111 12333 345799999 6776665432    2455443211        0        1233332223456778


Q ss_pred             EEe-------cCCCEEEEEECCCeEEEEECCCC-ceE---Eec-ccCCceEEEEEeCCCCEEEEEE
Q 047260          722 VFH-------PSYSTLLVVGGISSLELWNMAEN-KSM---TIA-AHENIISALAQSPVTGMVASAS  775 (784)
Q Consensus       722 ~fs-------pdg~~L~s~s~dg~I~Iwdl~~~-~~~---~~~-~h~~~V~slafspdg~~LaSgs  775 (784)
                      +|.       .++.++++.-..+.|...++... +..   .+. .....+..+++.|||.++++..
T Consensus       265 ~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          265 SFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             EECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred             EEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence            883       45655555555568888888753 222   222 2246799999999998777664

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.54  E-value=0.13  Score=56.34  Aligned_cols=233  Identities=13%  Similarity=0.194  Sum_probs=155.3

Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCC
Q 047260          513 CHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHS  592 (784)
Q Consensus       513 l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~  592 (784)
                      .-.+|..+.||.-. ..++.|||+++...+..+.- ...|.-=.|-.+. .|+..+ +..|.-|+++....+.+.+..|.
T Consensus        71 AIMnP~~~iiALra-g~~lQiFnle~K~klks~~~-~e~VvfWkWis~~-~l~lVT-~taVyHWsi~~~s~P~kvFdR~~  146 (494)
T 1bpo_A           71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHS  146 (494)
T ss_dssp             EEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEEEETT-EEEEEC-SSEEEEEESSSSCCCEEEEECCG
T ss_pred             eeeCCCCcEEEEec-CCeEEEEchHHhhhhcceec-CCCceEEEecCCC-eEEEEc-CCeeEEecccCCCCchhheecch
Confidence            44677777777654 67899999999888887754 3456666676443 455554 46899999987555666666553


Q ss_pred             ----CCeEEEEEcCCCCcEEEEEe------CCCeEEEEeCCCCeeEEeecCCeeEEE-EecCCC----EEEEEE-C---C
Q 047260          593 ----SPIMSLDFHPKKTDLFCFCD------NDNEIQYWSINPFLCTHITKGGTAQVR-FQPRIG----QLLAAA-S---D  653 (784)
Q Consensus       593 ----~~V~sl~~sp~~~~ll~sgs------~dg~I~iwDl~~~~~~~~~~~~v~~v~-fsp~~~----~Ll~~s-~---D  653 (784)
                          ..|..-..+++..+++++|-      -.|.+.+|..+.. ....++++..++. +..+++    .+++-. .   .
T Consensus       147 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g  225 (494)
T 1bpo_A          147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG  225 (494)
T ss_dssp             GGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTC
T ss_pred             hcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCC
Confidence                45777777888888887764      2467888888753 3344455554443 322321    233322 2   3


Q ss_pred             CcEEEEECCCC--------eEEEEEe----CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEeCCCCceEEEeccCCCceEE
Q 047260          654 KVVSIFDIETD--------RQTHSLQ----GHAELVNYICWDTNGDYLASVS-QNLVKVWSMASGECIQELSSNGNQFHS  720 (784)
Q Consensus       654 g~I~IwDl~t~--------~~i~~l~----~h~~~V~sl~~spdg~~Lasgs-dd~I~IwDl~t~~~i~~l~~~~~~I~s  720 (784)
                      +.++|.++...        +....+.    .-.+--.++..++.-.+++..+ .|.|.+||+.++.++..-+.....|..
T Consensus       226 ~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~  305 (494)
T 1bpo_A          226 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFV  305 (494)
T ss_dssp             CEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred             cEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEE
Confidence            78999998532        1111111    1233445677777666666655 569999999999999988888888877


Q ss_pred             EEEecCCCEEEEEECCCeEEEEECCCCceE
Q 047260          721 CVFHPSYSTLLVVGGISSLELWNMAENKSM  750 (784)
Q Consensus       721 l~fspdg~~L~s~s~dg~I~Iwdl~~~~~~  750 (784)
                      .+.+....-++.....|.|.-..+++...+
T Consensus       306 t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~iv  335 (494)
T 1bpo_A          306 TAPHEATAGIIGVNRKGQVLSVCVEEENII  335 (494)
T ss_dssp             EEEETTTTEEEEEETTCEEEEEEECTTTHH
T ss_pred             ecccCCCCcEEEEccCceEEEEEEccccch
Confidence            777777777888888998887777776544

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.53  E-value=0.0038  Score=66.42  Aligned_cols=150  Identities=5%  Similarity=0.062  Sum_probs=105.4

Q ss_pred             eeEEEEecCCCEEEEEEC-CCcEEEEECCCCeEEEE-EeC----CC--CCEEEEEE---cCCCCEEEEEe----------
Q 047260          635 TAQVRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHS-LQG----HA--ELVNYICW---DTNGDYLASVS----------  693 (784)
Q Consensus       635 v~~v~fsp~~~~Ll~~s~-Dg~I~IwDl~t~~~i~~-l~~----h~--~~V~sl~~---spdg~~Lasgs----------  693 (784)
                      ..+++|++....+++++. .+.|..||...+..... +.+    ..  ..+..|.|   .|+++++++..          
T Consensus        15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~   94 (334)
T 2p9w_A           15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ   94 (334)
T ss_dssp             CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred             CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence            356788887778887774 89999999875543322 221    11  13578999   68888887644          


Q ss_pred             ----CCeEEEEeCC---CCceEEEecc-------------CCCceEEEEEecCCCEEEEEECC-CeEEEEECCCCceEEe
Q 047260          694 ----QNLVKVWSMA---SGECIQELSS-------------NGNQFHSCVFHPSYSTLLVVGGI-SSLELWNMAENKSMTI  752 (784)
Q Consensus       694 ----dd~I~IwDl~---t~~~i~~l~~-------------~~~~I~sl~fspdg~~L~s~s~d-g~I~Iwdl~~~~~~~~  752 (784)
                          +..|..||+.   +++.+....-             .......++..++|+..++++.. +.|..++........+
T Consensus        95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~  174 (334)
T 2p9w_A           95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTF  174 (334)
T ss_dssp             CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEE
T ss_pred             ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeee
Confidence                3479999999   7877655531             11247899999999988888888 8888888776543322


Q ss_pred             ccc------CCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          753 AAH------ENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       753 ~~h------~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      ...      .-..+.|+++|++.+|++...+|.|..+|
T Consensus       175 ~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD  212 (334)
T 2p9w_A          175 AWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFD  212 (334)
T ss_dssp             EECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEE
T ss_pred             eecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEc
Confidence            211      12367999999999888887788887664

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.49  E-value=0.022  Score=60.66  Aligned_cols=190  Identities=8%  Similarity=0.106  Sum_probs=120.9

Q ss_pred             CCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEe-ecC---------CeeEEEE---ecCCCEEEEEEC------
Q 047260          592 SSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHI-TKG---------GTAQVRF---QPRIGQLLAAAS------  652 (784)
Q Consensus       592 ~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~-~~~---------~v~~v~f---sp~~~~Ll~~s~------  652 (784)
                      ..-..+++|++....++++.-..+.|..||......... +..         .+..+.|   .|++..+++...      
T Consensus        12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~   91 (334)
T 2p9w_A           12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF   91 (334)
T ss_dssp             TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred             ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence            334567899987776776666899999999975433222 222         2467889   688555554431      


Q ss_pred             -------CCcEEEEECC---CCeEEEEEeC-------------CCCCEEEEEEcCCCCEEEEEe-C-CeEEEEeCCCCce
Q 047260          653 -------DKVVSIFDIE---TDRQTHSLQG-------------HAELVNYICWDTNGDYLASVS-Q-NLVKVWSMASGEC  707 (784)
Q Consensus       653 -------Dg~I~IwDl~---t~~~i~~l~~-------------h~~~V~sl~~spdg~~Lasgs-d-d~I~IwDl~t~~~  707 (784)
                             +..|..||+.   +++.+....-             .......++.+++|+..++++ . +.|..++.... .
T Consensus        92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~  170 (334)
T 2p9w_A           92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-T  170 (334)
T ss_dssp             TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-C
T ss_pred             cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-E
Confidence                   5779999999   7776665541             113478999999999888766 4 56666665433 3


Q ss_pred             EEEec--c----CCCceEEEEEecCCCEEEEEECCCeEEEEECCCCce--EEec--cc---CCceEEE-EEeCCCCE-EE
Q 047260          708 IQELS--S----NGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKS--MTIA--AH---ENIISAL-AQSPVTGM-VA  772 (784)
Q Consensus       708 i~~l~--~----~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~--~~~~--~h---~~~V~sl-afspdg~~-La  772 (784)
                      +..+.  .    .....+.++++|++..|++....+.|..+|+.....  +.+.  +.   -.....| ..-.+|+. |+
T Consensus       171 ~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV  250 (334)
T 2p9w_A          171 VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLV  250 (334)
T ss_dssp             EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEE
T ss_pred             EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEE
Confidence            33221  1    122367999999999999998899999999885443  3222  21   1123343 33346766 44


Q ss_pred             EEECCCcEEE
Q 047260          773 SASHDSSVKL  782 (784)
Q Consensus       773 Sgs~DG~V~I  782 (784)
                      +.+..+.+.+
T Consensus       251 ~~~~~~~~~l  260 (334)
T 2p9w_A          251 GARAPYAISF  260 (334)
T ss_dssp             EEETTEEEEE
T ss_pred             EcCCCCEEEE
Confidence            4444554443

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.39  E-value=0.028  Score=60.67  Aligned_cols=227  Identities=7%  Similarity=0.060  Sum_probs=123.6

Q ss_pred             CeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcce--ee----eccCCCCCeEEEEEcCC---CCcEEEEEeC-------C
Q 047260          551 VVTDVRFRPNSSQLATASVDKSVRLWDAANPNFC--SQ----AYTGHSSPIMSLDFHPK---KTDLFCFCDN-------D  614 (784)
Q Consensus       551 ~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~--~~----~~~~h~~~V~sl~~sp~---~~~ll~sgs~-------d  614 (784)
                      ....|+|.|+++.|+++...|.|++++... ...  +.    ...........|+|+|+   +..++++-..       .
T Consensus        19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g-~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~   97 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLRGGELRHWQAGK-GLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG   97 (353)
T ss_dssp             SEEEEEECSTTCCEEEEETTTEEEEEETTT-EECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred             CcEEEEEcCCCCEEEEEeCCceEEEEeCCC-ceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence            467899999998444556789999998542 211  11    11122345789999996   5556555433       2


Q ss_pred             CeEEEEeCCCC-------eeE-Eeec------CCeeEEEEecCCCEEEEEEC-------------CCcEEEEECCCCe--
Q 047260          615 NEIQYWSINPF-------LCT-HITK------GGTAQVRFQPRIGQLLAAAS-------------DKVVSIFDIETDR--  665 (784)
Q Consensus       615 g~I~iwDl~~~-------~~~-~~~~------~~v~~v~fsp~~~~Ll~~s~-------------Dg~I~IwDl~t~~--  665 (784)
                      ..|..|++...       +.+ ....      .....+.|.|++..+++.+.             .|.|.-+|....-  
T Consensus        98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~  177 (353)
T 2g8s_A           98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPD  177 (353)
T ss_dssp             EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCT
T ss_pred             eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCC
Confidence            35666666432       111 1111      11356999999854444332             1457667765320  


Q ss_pred             ----------EEEEE-eCCCCCEEEEEEcC-CCCEEEEEeC----CeEEEEeCC--------CC----------------
Q 047260          666 ----------QTHSL-QGHAELVNYICWDT-NGDYLASVSQ----NLVKVWSMA--------SG----------------  705 (784)
Q Consensus       666 ----------~i~~l-~~h~~~V~sl~~sp-dg~~Lasgsd----d~I~IwDl~--------t~----------------  705 (784)
                                ....+ .++ .....++|+| +|.++++-..    +.|.+....        .+                
T Consensus       178 ~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~  256 (353)
T 2g8s_A          178 DNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEI  256 (353)
T ss_dssp             TCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSS
T ss_pred             CCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCC
Confidence                      11111 122 3467899999 6666555332    134332110        00                


Q ss_pred             -----ceEEEeccCCCceEEEEEec-------CCCEEEEEECCCeEEEEECCCCceE---Eec-ccCCceEEEEEeCCCC
Q 047260          706 -----ECIQELSSNGNQFHSCVFHP-------SYSTLLVVGGISSLELWNMAENKSM---TIA-AHENIISALAQSPVTG  769 (784)
Q Consensus       706 -----~~i~~l~~~~~~I~sl~fsp-------dg~~L~s~s~dg~I~Iwdl~~~~~~---~~~-~h~~~V~slafspdg~  769 (784)
                           .++..+..+ ..+..++|..       ++.++++.-..+.|...++..++..   .+. .....+..|++.|||.
T Consensus       257 ~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~  335 (353)
T 2g8s_A          257 VAGTEQPVFYWKDS-PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGY  335 (353)
T ss_dssp             CTTSCCCSEEESSC-CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSC
T ss_pred             CCCccCCeEEeCCC-cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCc
Confidence                 111222222 3456777764       3555555555678888888765433   222 2345799999999998


Q ss_pred             EEEEEE-CCCcE
Q 047260          770 MVASAS-HDSSV  780 (784)
Q Consensus       770 ~LaSgs-~DG~V  780 (784)
                      ++++.. .+|.|
T Consensus       336 lyv~td~~~g~I  347 (353)
T 2g8s_A          336 LYVLTDESSGEL  347 (353)
T ss_dssp             EEEEECSTTEEE
T ss_pred             EEEEEeCCCCEE
Confidence            766543 35544

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.35  E-value=0.072  Score=57.38  Aligned_cols=224  Identities=10%  Similarity=0.037  Sum_probs=122.1

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcee---eec----CCCCCCeEEEEEccC---CCEEEEEe-C------
Q 047260          507 NSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTE---STP----EDHKSVVTDVRFRPN---SSQLATAS-V------  569 (784)
Q Consensus       507 ~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~---~~l----~~h~~~It~i~fspd---g~~Latgs-~------  569 (784)
                      -...+.|+|.|+|++|+++...|.|++++.+ +...   ..+    .........|+|+|+   +..|+.+. .      
T Consensus        17 l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~   95 (353)
T 2g8s_A           17 LDHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK   95 (353)
T ss_dssp             ESSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred             CCCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence            3457899999999934445678999999854 3221   111    122346789999995   45555443 2      


Q ss_pred             -CCeEEEEcCCCCc-------ceeeecc---CCCCCeEEEEEcCCCCcEEEEEeC-------------CCeEEEEeCCCC
Q 047260          570 -DKSVRLWDAANPN-------FCSQAYT---GHSSPIMSLDFHPKKTDLFCFCDN-------------DNEIQYWSINPF  625 (784)
Q Consensus       570 -Dg~I~IWdl~~~~-------~~~~~~~---~h~~~V~sl~~sp~~~~ll~sgs~-------------dg~I~iwDl~~~  625 (784)
                       ...|..|++....       .+...+.   ........|.|.|++. ++++.+.             .|.|.-++.+..
T Consensus        96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~  174 (353)
T 2g8s_A           96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGY-LFIALGENNQRPTAQDLDKLQGKLVRLTDQGE  174 (353)
T ss_dssp             EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSE-EEEEECCTTCGGGGGCTTSCTTEEEEEETTSC
T ss_pred             ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCc-EEEEECCCCCCCccCCCCCCCeEEEEECCCCC
Confidence             2346666654321       0111111   1111245799999985 5544432             246766666532


Q ss_pred             --------------eeEEee-cCCeeEEEEecCCCEEEEEECCC--cEEEEECCCC------------------------
Q 047260          626 --------------LCTHIT-KGGTAQVRFQPRIGQLLAAASDK--VVSIFDIETD------------------------  664 (784)
Q Consensus       626 --------------~~~~~~-~~~v~~v~fsp~~~~Ll~~s~Dg--~I~IwDl~t~------------------------  664 (784)
                                    ..+... ......++|+|....|+++....  .=.|.-+..+                        
T Consensus       175 ~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~  254 (353)
T 2g8s_A          175 IPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKG  254 (353)
T ss_dssp             CCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCB
T ss_pred             CCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccC
Confidence                          111111 13456789999656666665431  1122211111                        


Q ss_pred             -------eEEEEEeCCCCCEEEEEEcC-------CCCEEEEEeCC-eEEEEeCCCCceEEE--e-ccCCCceEEEEEecC
Q 047260          665 -------RQTHSLQGHAELVNYICWDT-------NGDYLASVSQN-LVKVWSMASGECIQE--L-SSNGNQFHSCVFHPS  726 (784)
Q Consensus       665 -------~~i~~l~~h~~~V~sl~~sp-------dg~~Lasgsdd-~I~IwDl~t~~~i~~--l-~~~~~~I~sl~fspd  726 (784)
                             .++..+. +......+.|..       +|.++++.-.+ .|...++..++.+..  + ......+..+++.|+
T Consensus       255 ~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pd  333 (353)
T 2g8s_A          255 EIVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPD  333 (353)
T ss_dssp             SSCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTT
T ss_pred             CCCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCC
Confidence                   1112222 233566777764       46666655444 888888776654332  2 222357899999999


Q ss_pred             CCEEEEE
Q 047260          727 YSTLLVV  733 (784)
Q Consensus       727 g~~L~s~  733 (784)
                      |..+++.
T Consensus       334 G~lyv~t  340 (353)
T 2g8s_A          334 GYLYVLT  340 (353)
T ss_dssp             SCEEEEE
T ss_pred             CcEEEEE
Confidence            9854443

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.34  E-value=0.28  Score=53.80  Aligned_cols=243  Identities=11%  Similarity=0.164  Sum_probs=149.0

Q ss_pred             CCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcE
Q 047260          528 DRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDL  607 (784)
Q Consensus       528 Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~l  607 (784)
                      +..|.|.|+.+...+.+-.-   ..-+.-.+|..+.||.-. ..++.|+|+++... .+.+.- ...|.-=.|-.+..  
T Consensus        47 ~~~vvIiDl~~~~~~~rrpi---~AdsAIMnP~~~iiALra-g~~lQiFnle~K~k-lks~~~-~e~VvfWkWis~~~--  118 (494)
T 1bpo_A           47 QAQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEMKSK-MKAHTM-TDDVTFWKWISLNT--  118 (494)
T ss_dssp             CCEEEEEETTSTTSCEEEEC---CCSEEEECSSSSCEEEEE-TTEEEEEETTTTEE-EEEEEC-SSCCCEEEEEETTE--
T ss_pred             CCeEEEEECCCCCcceeccc---ccceeeeCCCCcEEEEec-CCeEEEEchHHhhh-hcceec-CCCceEEEecCCCe--
Confidence            44799999987554432211   112345678777777765 68999999998663 333332 23455556654443  


Q ss_pred             EEEEeCCCeEEEEeCCC-CeeEEeec-------CCeeEEEEecCCCEEEEEEC-------CCcEEEEECCCCeEEEEEeC
Q 047260          608 FCFCDNDNEIQYWSINP-FLCTHITK-------GGTAQVRFQPRIGQLLAAAS-------DKVVSIFDIETDRQTHSLQG  672 (784)
Q Consensus       608 l~sgs~dg~I~iwDl~~-~~~~~~~~-------~~v~~v~fsp~~~~Ll~~s~-------Dg~I~IwDl~t~~~i~~l~~  672 (784)
                      ++..+ +..|+.|++.. ......+.       ..|.....+++.++++..+-       .|.+.+|..+.+. -..+++
T Consensus       119 l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieG  196 (494)
T 1bpo_A          119 VALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEG  196 (494)
T ss_dssp             EEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECC
T ss_pred             EEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchhee
Confidence            33222 77899999963 22233322       34556667888888776553       4778899887543 345677


Q ss_pred             CCCCEEEEEEcCCC---CEEEEEeC----CeEEEEeCCCC--------ceEEEec-c---CCCceEEEEEecCCCEEEEE
Q 047260          673 HAELVNYICWDTNG---DYLASVSQ----NLVKVWSMASG--------ECIQELS-S---NGNQFHSCVFHPSYSTLLVV  733 (784)
Q Consensus       673 h~~~V~sl~~spdg---~~Lasgsd----d~I~IwDl~t~--------~~i~~l~-~---~~~~I~sl~fspdg~~L~s~  733 (784)
                      |......+.+..+.   .+++.+..    +.+.|.++...        +....+. .   ..+-..++.+++....++..
T Consensus       197 haa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyvi  276 (494)
T 1bpo_A          197 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI  276 (494)
T ss_dssp             SEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEE
T ss_pred             eeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEE
Confidence            76665555443221   24444443    48999998542        1111211 1   13345678899999999999


Q ss_pred             ECCCeEEEEECCCCceEEe-cccCCceEEEEEeCCCCEEEEEECCCcE
Q 047260          734 GGISSLELWNMAENKSMTI-AAHENIISALAQSPVTGMVASASHDSSV  780 (784)
Q Consensus       734 s~dg~I~Iwdl~~~~~~~~-~~h~~~V~slafspdg~~LaSgs~DG~V  780 (784)
                      +..|.|++||+.++.++.. .-..+.|...+......=++.....|.|
T Consensus       277 TK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqV  324 (494)
T 1bpo_A          277 TKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQV  324 (494)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEE
T ss_pred             ecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceE
Confidence            9999999999999998833 3344455544444444445555566654

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.31  E-value=0.14  Score=54.98  Aligned_cols=234  Identities=10%  Similarity=0.025  Sum_probs=126.8

Q ss_pred             eEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcee--eec----CCCCCCeEEEEEccC---CCEEEEE-
Q 047260          498 CEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTE--STP----EDHKSVVTDVRFRPN---SSQLATA-  567 (784)
Q Consensus       498 ~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~--~~l----~~h~~~It~i~fspd---g~~Latg-  567 (784)
                      .++..+...-...+.|+|.|||++|++--..|.|++++..+++..  ..+    .........|+|+|+   +..|+.. 
T Consensus        22 ~~~~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~y  101 (347)
T 3das_A           22 KVLRTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYF  101 (347)
T ss_dssp             EEEEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEE
T ss_pred             ceeEEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEE
Confidence            345555556667899999999997776655899999987655432  212    223567899999995   3445443 


Q ss_pred             e--CCCeEEEEcCCCC----------cceeeecc-CCCCCeEEEEEcCCCCcEEEEEeC-------------CCeEEEEe
Q 047260          568 S--VDKSVRLWDAANP----------NFCSQAYT-GHSSPIMSLDFHPKKTDLFCFCDN-------------DNEIQYWS  621 (784)
Q Consensus       568 s--~Dg~I~IWdl~~~----------~~~~~~~~-~h~~~V~sl~~sp~~~~ll~sgs~-------------dg~I~iwD  621 (784)
                      +  .+..|.-|.+...          +.+...+. ........|.|.|++. |+++.+.             .|.|.-++
T Consensus       102 t~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~-Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~  180 (347)
T 3das_A          102 TSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM-LYAGTGESGDTGLSQDRKSLGGKILRMT  180 (347)
T ss_dssp             ECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC-EEEECBCTTCGGGTTCTTCSTTCEEEEC
T ss_pred             ecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC-EEEEECCCCCCccccCCCCCCCEEEEEe
Confidence            2  3455665655431          11111111 1112346799999986 5444331             34555555


Q ss_pred             CCCC---------eeEEee-cCCeeEEEEecCCCEEEEEEC--CCcEEEEECCCCe------------------EEEEEe
Q 047260          622 INPF---------LCTHIT-KGGTAQVRFQPRIGQLLAAAS--DKVVSIFDIETDR------------------QTHSLQ  671 (784)
Q Consensus       622 l~~~---------~~~~~~-~~~v~~v~fsp~~~~Ll~~s~--Dg~I~IwDl~t~~------------------~i~~l~  671 (784)
                      .+..         ..+... ......++|+|++. |+++..  ++.-.|.-+..+.                  ++..+.
T Consensus       181 ~dG~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~-L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~  259 (347)
T 3das_A          181 PDGEPAPGNPFPGSPVYSYGHRNVQGLAWDDKQR-LFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWS  259 (347)
T ss_dssp             TTSSBCTTCSSTTCCEEEBCCSBCCEEEECTTCC-EEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEEC
T ss_pred             CCCCccCCCCCCCCeEEeeCCCCcceEEECCCCC-EEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecC
Confidence            5422         111111 12356788999754 555443  3322222222221                  122232


Q ss_pred             CCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCc----eEEEeccCCCceEEEEEecCCCEEEEEE
Q 047260          672 GHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGE----CIQELSSNGNQFHSCVFHPSYSTLLVVG  734 (784)
Q Consensus       672 ~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~----~i~~l~~~~~~I~sl~fspdg~~L~s~s  734 (784)
                      .+......++|. +|.+++..-.+ .|....+....    ....+......+..++..|||..+++..
T Consensus       260 ~~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td  326 (347)
T 3das_A          260 TDEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS  326 (347)
T ss_dssp             TTTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred             CCCCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence            222345666665 35555554444 66555665442    2223334446789999999987555543

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.27  E-value=0.19  Score=53.94  Aligned_cols=225  Identities=10%  Similarity=0.071  Sum_probs=125.4

Q ss_pred             CCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcce-ee----eccCCCCCeEEEEEcCC---CCcEEEEE--eCCCeE
Q 047260          548 HKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFC-SQ----AYTGHSSPIMSLDFHPK---KTDLFCFC--DNDNEI  617 (784)
Q Consensus       548 h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~-~~----~~~~h~~~V~sl~~sp~---~~~ll~sg--s~dg~I  617 (784)
                      .-...+.|+|.|+++++++--..|.|++++..++... +.    .+.........|+|+|+   +..++++-  ..++.|
T Consensus        30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v  109 (347)
T 3das_A           30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI  109 (347)
T ss_dssp             CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred             CCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEE
Confidence            3456789999999987777655899999987654421 11    11223456889999996   34444432  234566


Q ss_pred             EEEeCCC----------CeeEE-eec----CCeeEEEEecCCCEEEEEEC-------------CCcEEEEECCCC-----
Q 047260          618 QYWSINP----------FLCTH-ITK----GGTAQVRFQPRIGQLLAAAS-------------DKVVSIFDIETD-----  664 (784)
Q Consensus       618 ~iwDl~~----------~~~~~-~~~----~~v~~v~fsp~~~~Ll~~s~-------------Dg~I~IwDl~t~-----  664 (784)
                      .-|.+..          .+.+. .+.    .....+.|.|++..+++.+.             .|.|.-++....     
T Consensus       110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~n  189 (347)
T 3das_A          110 VRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGN  189 (347)
T ss_dssp             EEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTC
T ss_pred             EEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCC
Confidence            6665543          11111 121    12356899999876666542             255555555422     


Q ss_pred             ----eEEEEEeCCCCCEEEEEEcCCCCEEEEEe--CC--eEEEEeCC--------CC--------ceEEEeccCCCceEE
Q 047260          665 ----RQTHSLQGHAELVNYICWDTNGDYLASVS--QN--LVKVWSMA--------SG--------ECIQELSSNGNQFHS  720 (784)
Q Consensus       665 ----~~i~~l~~h~~~V~sl~~spdg~~Lasgs--dd--~I~IwDl~--------t~--------~~i~~l~~~~~~I~s  720 (784)
                          ..+. -.+|. ....++|+|+|.++++-.  +.  .|.+..-.        .+        .++..+..+......
T Consensus       190 Pf~~~~i~-a~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G  267 (347)
T 3das_A          190 PFPGSPVY-SYGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSG  267 (347)
T ss_dssp             SSTTCCEE-EBCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEE
T ss_pred             CCCCCeEE-eeCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcc
Confidence                1111 12343 345789999988766543  21  44443211        01        122333322234566


Q ss_pred             EEEecCCCEEEEEECCCeEEEEECCCCce----E-EecccCCceEEEEEeCCCCEEEEEE
Q 047260          721 CVFHPSYSTLLVVGGISSLELWNMAENKS----M-TIAAHENIISALAQSPVTGMVASAS  775 (784)
Q Consensus       721 l~fspdg~~L~s~s~dg~I~Iwdl~~~~~----~-~~~~h~~~V~slafspdg~~LaSgs  775 (784)
                      ++|.. +..++..-..+.|....+.....    . .+.+..+++.+|+..|||.++++.+
T Consensus       268 ~~~~~-g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td  326 (347)
T 3das_A          268 IAYAE-GSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS  326 (347)
T ss_dssp             EEEET-TEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred             eEEEc-CceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence            77763 44344333445676666655432    1 2334457899999999998776654

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.25  E-value=0.023  Score=59.25  Aligned_cols=225  Identities=13%  Similarity=0.088  Sum_probs=112.3

Q ss_pred             CCEEEEEeCC----CeEEEEECCCCceeee--cCCCCCCeEEEEEccCCCEEEEEeCC-----CeEEEEcCCCCcceeee
Q 047260          519 GKLLASSGHD----RKVVLWNMDTLQTEST--PEDHKSVVTDVRFRPNSSQLATASVD-----KSVRLWDAANPNFCSQA  587 (784)
Q Consensus       519 g~~Lasgs~D----g~I~IWd~~t~~~~~~--l~~h~~~It~i~fspdg~~Latgs~D-----g~I~IWdl~~~~~~~~~  587 (784)
                      +.+++.|+.+    ..+.+||+.+.+-...  +......-..+.+  ++.+++.|+.+     ..+.+||..+.......
T Consensus        16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~   93 (302)
T 2xn4_A           16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA   93 (302)
T ss_dssp             EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred             CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCC
Confidence            3455556543    3588899887553322  1111111122222  66677777754     35888998876532211


Q ss_pred             -ccCCCCCeEEEEEcCCCCcEEEEEeCCC-----eEEEEeCCCCeeEEeec--CCe--eEEEEecCCCEEEEEEC-----
Q 047260          588 -YTGHSSPIMSLDFHPKKTDLFCFCDNDN-----EIQYWSINPFLCTHITK--GGT--AQVRFQPRIGQLLAAAS-----  652 (784)
Q Consensus       588 -~~~h~~~V~sl~~sp~~~~ll~sgs~dg-----~I~iwDl~~~~~~~~~~--~~v--~~v~fsp~~~~Ll~~s~-----  652 (784)
                       +.........+.+  + ..+++.|+.++     .+.+||+.+.+-.....  .+.  ..++. -++..++.|+.     
T Consensus        94 ~~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~  169 (302)
T 2xn4_A           94 NMRDRRSTLGAAVL--N-GLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGLLYAVGGYDVASR  169 (302)
T ss_dssp             CCSSCCBSCEEEEE--T-TEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTTT
T ss_pred             CCCccccceEEEEE--C-CEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCEEEEEeCCCCCCC
Confidence             1111111222222  3 34666666443     57788887765443322  111  12222 24445555543     


Q ss_pred             --CCcEEEEECCCCeEEEE--EeCCCCCEEEEEEcCCCCEEEEEeC------CeEEEEeCCCCceEEEeccCCCc-eEEE
Q 047260          653 --DKVVSIFDIETDRQTHS--LQGHAELVNYICWDTNGDYLASVSQ------NLVKVWSMASGECIQELSSNGNQ-FHSC  721 (784)
Q Consensus       653 --Dg~I~IwDl~t~~~i~~--l~~h~~~V~sl~~spdg~~Lasgsd------d~I~IwDl~t~~~i~~l~~~~~~-I~sl  721 (784)
                        -..+.+||+.+.+-...  +.........+.+  ++++++.|+.      +.+.+||+.+.+-...-...... -..+
T Consensus       170 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~  247 (302)
T 2xn4_A          170 QCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGV  247 (302)
T ss_dssp             EECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEE
T ss_pred             ccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeE
Confidence              24588999987643322  1111112222222  5666666542      36899999886543221111111 1222


Q ss_pred             EEecCCCEEEEEECCC-----eEEEEECCCCceEEe
Q 047260          722 VFHPSYSTLLVVGGIS-----SLELWNMAENKSMTI  752 (784)
Q Consensus       722 ~fspdg~~L~s~s~dg-----~I~Iwdl~~~~~~~~  752 (784)
                      +. -++..++.|+.++     .|.+||+.+++-..+
T Consensus       248 ~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~  282 (302)
T 2xn4_A          248 CA-VNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVV  282 (302)
T ss_dssp             EE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred             EE-ECCEEEEECCcCCCcccccEEEEcCCCCeEEEC
Confidence            22 2556666666543     589999988765543

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.23  E-value=0.043  Score=57.26  Aligned_cols=220  Identities=9%  Similarity=0.059  Sum_probs=113.3

Q ss_pred             EEEEEeC--CCeEEEEECCCCceeee--cCCCCCCeEEEEEccCCCEEEEEeCC----CeEEEEcCCCCcceeee-ccCC
Q 047260          521 LLASSGH--DRKVVLWNMDTLQTEST--PEDHKSVVTDVRFRPNSSQLATASVD----KSVRLWDAANPNFCSQA-YTGH  591 (784)
Q Consensus       521 ~Lasgs~--Dg~I~IWd~~t~~~~~~--l~~h~~~It~i~fspdg~~Latgs~D----g~I~IWdl~~~~~~~~~-~~~h  591 (784)
                      +++.|+.  ...+.+||..+.+-...  +.........+.+  ++.+++.|+.+    ..+.+||+.+....... +...
T Consensus        14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~   91 (306)
T 3ii7_A           14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP   91 (306)
T ss_dssp             EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSC
T ss_pred             EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcc
Confidence            4555654  35689999887553322  2211222222332  66677777755    67889998876532211 1111


Q ss_pred             CCCeEEEEEcCCCCcEEEEEeCC------CeEEEEeCCCCeeEEeecC--C--eeEEEEecCCCEEEEEEC---------
Q 047260          592 SSPIMSLDFHPKKTDLFCFCDND------NEIQYWSINPFLCTHITKG--G--TAQVRFQPRIGQLLAAAS---------  652 (784)
Q Consensus       592 ~~~V~sl~~sp~~~~ll~sgs~d------g~I~iwDl~~~~~~~~~~~--~--v~~v~fsp~~~~Ll~~s~---------  652 (784)
                      ......+.+   +..+++.|+.+      ..+.+||+.+..-......  +  ...++. -++..++.|+.         
T Consensus        92 r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~  167 (306)
T 3ii7_A           92 RDSLAACAA---EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGRV  167 (306)
T ss_dssp             CBSCEEEEE---TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCEE
T ss_pred             ccceeEEEE---CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCCcccc
Confidence            111222222   33477777654      4688999887654433221  1  112222 24455555543         


Q ss_pred             CCcEEEEECCCCeEEEE--EeCCCCCEEEEEEcCCCCEEEEEeC------CeEEEEeCCCCceEE--EeccCCCceEEEE
Q 047260          653 DKVVSIFDIETDRQTHS--LQGHAELVNYICWDTNGDYLASVSQ------NLVKVWSMASGECIQ--ELSSNGNQFHSCV  722 (784)
Q Consensus       653 Dg~I~IwDl~t~~~i~~--l~~h~~~V~sl~~spdg~~Lasgsd------d~I~IwDl~t~~~i~--~l~~~~~~I~sl~  722 (784)
                      -..+.+||+.+.+-...  +.........+.+  ++++++.|+.      +.+.+||+.+.+-..  .+.........+.
T Consensus       168 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~  245 (306)
T 3ii7_A          168 LNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAA  245 (306)
T ss_dssp             CCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEE
T ss_pred             cceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEE
Confidence            34588999988743322  1111111122222  5666666541      368999998764322  1221112222223


Q ss_pred             EecCCCEEEEEECC-----CeEEEEECCCCceE
Q 047260          723 FHPSYSTLLVVGGI-----SSLELWNMAENKSM  750 (784)
Q Consensus       723 fspdg~~L~s~s~d-----g~I~Iwdl~~~~~~  750 (784)
                      +  ++..++.|+.+     ..|.+||+.+.+-.
T Consensus       246 ~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~  276 (306)
T 3ii7_A          246 V--GSIVYVLAGFQGVGRLGHILEYNTETDKWV  276 (306)
T ss_dssp             E--TTEEEEEECBCSSSBCCEEEEEETTTTEEE
T ss_pred             E--CCEEEEEeCcCCCeeeeeEEEEcCCCCeEE
Confidence            3  55666677644     47899999887654

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.22  E-value=0.018  Score=62.20  Aligned_cols=191  Identities=9%  Similarity=0.078  Sum_probs=109.3

Q ss_pred             CeEEEEEccCCCEEEEE------------eCCCeEEEEcCCCC--cceeeeccC-----CCCCeEEEEEcC--CCC-cEE
Q 047260          551 VVTDVRFRPNSSQLATA------------SVDKSVRLWDAANP--NFCSQAYTG-----HSSPIMSLDFHP--KKT-DLF  608 (784)
Q Consensus       551 ~It~i~fspdg~~Latg------------s~Dg~I~IWdl~~~--~~~~~~~~~-----h~~~V~sl~~sp--~~~-~ll  608 (784)
                      ...+|...++|..++++            ..+|.|.++|.++.  +.....+.+     ..-....|.+.+  ++. +++
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~  130 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  130 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence            34455566665443333            26899999998743  211112222     223567777766  344 344


Q ss_pred             EEEeC--CCeEEEEeCCC--Cee--EEeec----CCeeEEEEecCCCEEEEEEC-----------------CCcEEEEEC
Q 047260          609 CFCDN--DNEIQYWSINP--FLC--THITK----GGTAQVRFQPRIGQLLAAAS-----------------DKVVSIFDI  661 (784)
Q Consensus       609 ~sgs~--dg~I~iwDl~~--~~~--~~~~~----~~v~~v~fsp~~~~Ll~~s~-----------------Dg~I~IwDl  661 (784)
                      ++-..  +..|.+|+++.  ...  +....    ...+.+.+.++|..+++...                 .|.|..+|.
T Consensus       131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~  210 (355)
T 3sre_A          131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP  210 (355)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred             EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence            44433  46777777654  222  22222    34678999999876655431                 245655655


Q ss_pred             CCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEeCCC-Cce--EEEeccCCCceEEEEEec-CCCEEEEEEC
Q 047260          662 ETDRQTHSLQGHAELVNYICWDTNGDYLASVS--QNLVKVWSMAS-GEC--IQELSSNGNQFHSCVFHP-SYSTLLVVGG  735 (784)
Q Consensus       662 ~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgs--dd~I~IwDl~t-~~~--i~~l~~~~~~I~sl~fsp-dg~~L~s~s~  735 (784)
                      .  + +..+...-..-+.++|+||++.|+.+.  .+.|..|++.. ++.  ...+ ........+++.+ +|.+.+++..
T Consensus       211 ~--~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~  286 (355)
T 3sre_A          211 N--D-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHP  286 (355)
T ss_dssp             T--C-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEES
T ss_pred             C--e-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecC
Confidence            3  2 222222334578899999999888876  34999999863 322  2233 2245667889999 5887666654


Q ss_pred             CC-eEEEEECC
Q 047260          736 IS-SLELWNMA  745 (784)
Q Consensus       736 dg-~I~Iwdl~  745 (784)
                      ++ .|..|+..
T Consensus       287 ~g~~v~~~~P~  297 (355)
T 3sre_A          287 NGMRIFFYDAE  297 (355)
T ss_dssp             CHHHHHSCCTT
T ss_pred             CceEEEEECCC
Confidence            42 44444433

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=97.04  E-value=0.03  Score=59.16  Aligned_cols=195  Identities=7%  Similarity=0.025  Sum_probs=114.6

Q ss_pred             cCCCEEEEEeC--CCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCC-------------CeEEEEeCC
Q 047260          559 PNSSQLATASV--DKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDND-------------NEIQYWSIN  623 (784)
Q Consensus       559 pdg~~Latgs~--Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~d-------------g~I~iwDl~  623 (784)
                      .++..|+....  ++.|...+.+... ..+ +..    -.+--+++++..+..+...+             ..|+..+++
T Consensus        23 ~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~-l~~----~~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~d   96 (302)
T 3s25_A           23 ESDGEVFFSNTNDNGRLYAMNIDGSN-IHK-LSN----DTAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRN   96 (302)
T ss_dssp             EETTEEEEEEGGGTTEEEEEETTSCS-CEE-EEE----EEEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETT
T ss_pred             EeCCEEEEEeCCCCceEEEEcCCCCC-CEE-ccC----CceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCC
Confidence            45666666542  4555555554332 222 221    12345577888777776654             468888887


Q ss_pred             CCeeEEeecCCeeEEEEecCCCEEEEEE----CCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC--eE
Q 047260          624 PFLCTHITKGGTAQVRFQPRIGQLLAAA----SDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN--LV  697 (784)
Q Consensus       624 ~~~~~~~~~~~v~~v~fsp~~~~Ll~~s----~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd--~I  697 (784)
                      ............  ..|+++++.|+...    ....|+..++.... ...+..+..    ..|+++++.|+-.+++  .|
T Consensus        97 g~~~~~l~~~~~--~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~----~~~~~~g~~iy~t~~g~~~I  169 (302)
T 3s25_A           97 GHGSTVLDPDPC--IYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL----FTCNTSDRYFYYNNPKNGQL  169 (302)
T ss_dssp             SCCCEEEECSCE--EEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC----CCSEEETTEEEEECTTTCCE
T ss_pred             CCcceEeecCCc--cEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc----eEeeEECCEEEEEeCCCceE
Confidence            765544444433  36778889988876    24567777776433 333433332    3467788888877653  89


Q ss_pred             EEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCC--eEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEE
Q 047260          698 KVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGIS--SLELWNMAENKSMTIAAHENIISALAQSPVTGMVASA  774 (784)
Q Consensus       698 ~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg--~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSg  774 (784)
                      .+.++..+.....+.+   ... ..++|++.+|+.....+  .|..-++.......+...  .+  ..|+|++.+|+.+
T Consensus       170 y~~~l~g~~~~~l~~~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~~--~~--~~~~~~g~~Iy~~  240 (302)
T 3s25_A          170 YRYDTASQSEALFYDC---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLTEA--NI--EHYNVYGSLIFYQ  240 (302)
T ss_dssp             EEEETTTTEEEEEECS---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCCEECSCS--CE--EEEEEETTEEEEE
T ss_pred             EEEECCCCCEEEEeCC---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEEeCC--Cc--ceEEECCCEEEEE
Confidence            9999877654433332   222 34669999988877553  677777777665544322  22  2255555555544

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=97.02  E-value=0.13  Score=54.13  Aligned_cols=176  Identities=4%  Similarity=-0.040  Sum_probs=107.4

Q ss_pred             EEEcCCCCEEEEEeCC--------------CeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEe--CCC--eEE
Q 047260          513 CHFSSDGKLLASSGHD--------------RKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATAS--VDK--SVR  574 (784)
Q Consensus       513 l~fspdg~~Lasgs~D--------------g~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs--~Dg--~I~  574 (784)
                      --|+++|++|+.+...              ..|+..+++..+......   ..  +..|++++++|+-..  .++  .|.
T Consensus        58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~---~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy  132 (302)
T 3s25_A           58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDP---DP--CIYASLIGNYIYYLHYDTQTATSLY  132 (302)
T ss_dssp             EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEEC---SC--EEEEEEETTEEEEEEESSSSCEEEE
T ss_pred             eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeec---CC--ccEEEEeCCEEEEEeecCCCCceEE
Confidence            4557888888776543              467888887655333221   11  236777888888776  334  455


Q ss_pred             EEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCCeeEEEEecCCCEEEEEECC-
Q 047260          575 LWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAASD-  653 (784)
Q Consensus       575 IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v~~v~fsp~~~~Ll~~s~D-  653 (784)
                      .-+++...  ...+..+..    ..|++++..++.+......|.+.+++.......+.+... ..+.|++++|+....+ 
T Consensus       133 ~~~~dGs~--~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~~~~-~~~~P~g~~iy~t~~~~  205 (302)
T 3s25_A          133 RIRIDGEE--KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDCNCY-KPVVLDDTNVYYMDVNR  205 (302)
T ss_dssp             EEETTSCC--CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECSCEE-EEEEEETTEEEEEEGGG
T ss_pred             EEECCCCC--eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCCCcc-ceeeecCCEEEEEEcCC
Confidence            55555332  223333322    345677887777766578899999987766555555443 3466999998887754 


Q ss_pred             -CcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeC---CeEEEEeCCCC
Q 047260          654 -KVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQ---NLVKVWSMASG  705 (784)
Q Consensus       654 -g~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsd---d~I~IwDl~t~  705 (784)
                       ..|..-++.... ...+.  ...+  ..|+|++..|+-+.+   +.|..-++...
T Consensus       206 ~~~I~~~~ldG~~-~~~Lt--~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~  256 (302)
T 3s25_A          206 DNAIVHVNINNPN-PVVLT--EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGT  256 (302)
T ss_dssp             TTEEEEECSSSCC-CEECS--CSCE--EEEEEETTEEEEEECSSSCEEEEEETTSC
T ss_pred             CcEEEEEECCCCC-eEEEe--CCCc--ceEEECCCEEEEEECCCCcEEEEEECCCC
Confidence             367777776544 23332  2233  347788888876643   26777776543

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.95  E-value=0.045  Score=57.31  Aligned_cols=225  Identities=8%  Similarity=-0.014  Sum_probs=113.1

Q ss_pred             CCCEEEEEeCC----CeEEEEECCCCceeee--cCCCCCCeEEEEEccCCCEEEEEeC----C-----CeEEEEcCCCCc
Q 047260          518 DGKLLASSGHD----RKVVLWNMDTLQTEST--PEDHKSVVTDVRFRPNSSQLATASV----D-----KSVRLWDAANPN  582 (784)
Q Consensus       518 dg~~Lasgs~D----g~I~IWd~~t~~~~~~--l~~h~~~It~i~fspdg~~Latgs~----D-----g~I~IWdl~~~~  582 (784)
                      ++.+++.|+.+    ..+.+||..+.+-...  +......-..+.+  ++.+++.|+.    +     ..+.+||+.+..
T Consensus        24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~  101 (308)
T 1zgk_A           24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ  101 (308)
T ss_dssp             CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred             CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence            56677777642    3589999887553322  1111111122222  5667777765    2     358889988765


Q ss_pred             ceeee-ccCCCCCeEEEEEcCCCCcEEEEEeCC-----CeEEEEeCCCCeeEEeecC--C--eeEEEEecCCCEEEEEEC
Q 047260          583 FCSQA-YTGHSSPIMSLDFHPKKTDLFCFCDND-----NEIQYWSINPFLCTHITKG--G--TAQVRFQPRIGQLLAAAS  652 (784)
Q Consensus       583 ~~~~~-~~~h~~~V~sl~~sp~~~~ll~sgs~d-----g~I~iwDl~~~~~~~~~~~--~--v~~v~fsp~~~~Ll~~s~  652 (784)
                      ..... +.........+.+  + ..+++.|+.+     ..+.+||+.+.+-......  .  ...++.. ++..++.|+.
T Consensus       102 W~~~~~~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~  177 (308)
T 1zgk_A          102 WSPCAPMSVPRNRIGVGVI--D-GHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAVGGF  177 (308)
T ss_dssp             EEECCCCSSCCBTCEEEEE--T-TEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCB
T ss_pred             EeECCCCCcCccccEEEEE--C-CEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE-CCEEEEEeCC
Confidence            32211 1111111222222  3 3466666533     4688899887654433221  1  1122222 4455555554


Q ss_pred             C-----CcEEEEECCCCeEEEE--EeCCCCCEEEEEEcCCCCEEEEEe-C-----CeEEEEeCCCCceEEEeccCCC-ce
Q 047260          653 D-----KVVSIFDIETDRQTHS--LQGHAELVNYICWDTNGDYLASVS-Q-----NLVKVWSMASGECIQELSSNGN-QF  718 (784)
Q Consensus       653 D-----g~I~IwDl~t~~~i~~--l~~h~~~V~sl~~spdg~~Lasgs-d-----d~I~IwDl~t~~~i~~l~~~~~-~I  718 (784)
                      +     ..+.+||+.+.+-...  +.........+.+  ++++++.|+ +     +.+.+||+.+.+-...-..... .-
T Consensus       178 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~  255 (308)
T 1zgk_A          178 DGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSA  255 (308)
T ss_dssp             CSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBS
T ss_pred             CCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccc
Confidence            3     5689999987643221  1111112222333  566666654 2     3689999988653322111111 11


Q ss_pred             EEEEEecCCCEEEEEECC-----CeEEEEECCCCceEE
Q 047260          719 HSCVFHPSYSTLLVVGGI-----SSLELWNMAENKSMT  751 (784)
Q Consensus       719 ~sl~fspdg~~L~s~s~d-----g~I~Iwdl~~~~~~~  751 (784)
                      .+++.. ++..++.|+.+     ..|.+||+.+.+-..
T Consensus       256 ~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~  292 (308)
T 1zgk_A          256 LGITVH-QGRIYVLGGYDGHTFLDSVECYDPDTDTWSE  292 (308)
T ss_dssp             CEEEEE-TTEEEEECCBCSSCBCCEEEEEETTTTEEEE
T ss_pred             eEEEEE-CCEEEEEcCcCCCcccceEEEEcCCCCEEee
Confidence            223332 55566666643     368899988876543

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.90  E-value=0.078  Score=55.23  Aligned_cols=208  Identities=10%  Similarity=0.055  Sum_probs=104.4

Q ss_pred             CEEEEEeC--CCeEEEEcCCCCcceeee-ccCCCCCeEEEEEcCCCCcEEEEEeCC----CeEEEEeCCCCeeEEeec--
Q 047260          562 SQLATASV--DKSVRLWDAANPNFCSQA-YTGHSSPIMSLDFHPKKTDLFCFCDND----NEIQYWSINPFLCTHITK--  632 (784)
Q Consensus       562 ~~Latgs~--Dg~I~IWdl~~~~~~~~~-~~~h~~~V~sl~~sp~~~~ll~sgs~d----g~I~iwDl~~~~~~~~~~--  632 (784)
                      .+++.|+.  ...+.+||..+.+..... ..........+.+   +..+++.|+.+    ..+.+||+.+.+-.....  
T Consensus        13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p   89 (306)
T 3ii7_A           13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW---DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP   89 (306)
T ss_dssp             EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE---TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred             eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE---CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence            34555654  357889998876532211 1111111222222   33477777654    678899988765443322  


Q ss_pred             CC-eeEEEEecCCCEEEEEECC------CcEEEEECCCCeEEEE--EeCCCCCEEEEEEcCCCCEEEEEe----------
Q 047260          633 GG-TAQVRFQPRIGQLLAAASD------KVVSIFDIETDRQTHS--LQGHAELVNYICWDTNGDYLASVS----------  693 (784)
Q Consensus       633 ~~-v~~v~fsp~~~~Ll~~s~D------g~I~IwDl~t~~~i~~--l~~h~~~V~sl~~spdg~~Lasgs----------  693 (784)
                      .. .......-++..++.|+.+      ..+.+||..+.+-...  +.........+.  -++++++.|+          
T Consensus        90 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~  167 (306)
T 3ii7_A           90 TPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRV  167 (306)
T ss_dssp             SCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEE
T ss_pred             ccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE--ECCEEEEECCCCCCCCcccc
Confidence            11 1111112245556666644      5689999988753322  111111112222  2556666554          


Q ss_pred             CCeEEEEeCCCCceEEEeccCCC-ceEEEEEecCCCEEEEEECC-----CeEEEEECCCCceEEeccc---CCceEEEEE
Q 047260          694 QNLVKVWSMASGECIQELSSNGN-QFHSCVFHPSYSTLLVVGGI-----SSLELWNMAENKSMTIAAH---ENIISALAQ  764 (784)
Q Consensus       694 dd~I~IwDl~t~~~i~~l~~~~~-~I~sl~fspdg~~L~s~s~d-----g~I~Iwdl~~~~~~~~~~h---~~~V~slaf  764 (784)
                      .+.+.+||+.+.+-...-..... .-.+++.. ++..++.|+.+     ..+.+||+.+.+-..+...   .....++.+
T Consensus       168 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~  246 (306)
T 3ii7_A          168 LNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV  246 (306)
T ss_dssp             CCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE
T ss_pred             cceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE
Confidence            23588999988753322111111 11223333 55555555543     3689999988765543221   111222222


Q ss_pred             eCCCCEEEEEECC
Q 047260          765 SPVTGMVASASHD  777 (784)
Q Consensus       765 spdg~~LaSgs~D  777 (784)
                        ++.+++.|+.+
T Consensus       247 --~~~i~v~GG~~  257 (306)
T 3ii7_A          247 --GSIVYVLAGFQ  257 (306)
T ss_dssp             --TTEEEEEECBC
T ss_pred             --CCEEEEEeCcC
Confidence              56777888755

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=96.87  E-value=0.046  Score=56.82  Aligned_cols=212  Identities=13%  Similarity=0.074  Sum_probs=104.1

Q ss_pred             CCCEEEEEe-CC-----CeEEEEcCCCCcceeee-ccCCCCCeEEEEEcCCCCcEEEEEeCC-----CeEEEEeCCCCe-
Q 047260          560 NSSQLATAS-VD-----KSVRLWDAANPNFCSQA-YTGHSSPIMSLDFHPKKTDLFCFCDND-----NEIQYWSINPFL-  626 (784)
Q Consensus       560 dg~~Latgs-~D-----g~I~IWdl~~~~~~~~~-~~~h~~~V~sl~~sp~~~~ll~sgs~d-----g~I~iwDl~~~~-  626 (784)
                      ++.+++.|+ .+     ..+.+||+.+.+..... +.........+.+   +..+++.|+.+     ..+.+||+.+.. 
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~l~v~GG~~~~~~~~~~~~~d~~~~~~   90 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSL---HDRIYVIGGYDGRSRLSSVECLDYTADED   90 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEECCBCSSCBCCCEEEEETTCCTT
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEE---CCEEEEEcCCCCCccCceEEEEECCCCCC
Confidence            344566665 22     36888888875532211 1111111222222   23477777654     468899987655 


Q ss_pred             --eEEeec--CC--eeEEEEecCCCEEEEEECC-----CcEEEEECCCCeEEE--EEeCCCCCEEEEEEcCCCCEEEEEe
Q 047260          627 --CTHITK--GG--TAQVRFQPRIGQLLAAASD-----KVVSIFDIETDRQTH--SLQGHAELVNYICWDTNGDYLASVS  693 (784)
Q Consensus       627 --~~~~~~--~~--v~~v~fsp~~~~Ll~~s~D-----g~I~IwDl~t~~~i~--~l~~h~~~V~sl~~spdg~~Lasgs  693 (784)
                        -.....  ..  ...++. .++..++.|+.+     ..+.+||+.+.+-..  .+........++.+  ++++++.|+
T Consensus        91 ~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG  167 (301)
T 2vpj_A           91 GVWYSVAPMNVRRGLAGATT-LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGG  167 (301)
T ss_dssp             CCCEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECC
T ss_pred             CeeEECCCCCCCccceeEEE-ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECC
Confidence              332221  11  112222 244555555543     468899988765332  22211112222222  566666654


Q ss_pred             -C-----CeEEEEeCCCCceEEEeccCCCc-eEEEEEecCCCEEEEEECC-----CeEEEEECCCCceEEecccC-CceE
Q 047260          694 -Q-----NLVKVWSMASGECIQELSSNGNQ-FHSCVFHPSYSTLLVVGGI-----SSLELWNMAENKSMTIAAHE-NIIS  760 (784)
Q Consensus       694 -d-----d~I~IwDl~t~~~i~~l~~~~~~-I~sl~fspdg~~L~s~s~d-----g~I~Iwdl~~~~~~~~~~h~-~~V~  760 (784)
                       +     +.+.+||+.+.+-...-...... -.+++.. ++..++.|+.+     ..|.+||+.+.+-..+.... ....
T Consensus       168 ~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~  246 (301)
T 2vpj_A          168 YDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL-NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCY  246 (301)
T ss_dssp             BCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBS
T ss_pred             CCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE-CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccc
Confidence             2     36899999887543321111111 1222222 45556666654     46999999988765443211 1111


Q ss_pred             EEEEeCCCCEEEEEECCC
Q 047260          761 ALAQSPVTGMVASASHDS  778 (784)
Q Consensus       761 slafspdg~~LaSgs~DG  778 (784)
                      ..++.-++++++.|+.++
T Consensus       247 ~~~~~~~~~i~v~GG~~~  264 (301)
T 2vpj_A          247 VGATVLRGRLYAIAGYDG  264 (301)
T ss_dssp             CEEEEETTEEEEECCBCS
T ss_pred             eeEEEECCEEEEEcCcCC
Confidence            111222566777777653

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.82  E-value=0.073  Score=55.33  Aligned_cols=208  Identities=12%  Similarity=0.043  Sum_probs=102.3

Q ss_pred             CEEEEEeCC----CeEEEEcCCCCcceeee-ccCCCCCeEEEEEcCCCCcEEEEEeCC-----CeEEEEeCCCCeeEEee
Q 047260          562 SQLATASVD----KSVRLWDAANPNFCSQA-YTGHSSPIMSLDFHPKKTDLFCFCDND-----NEIQYWSINPFLCTHIT  631 (784)
Q Consensus       562 ~~Latgs~D----g~I~IWdl~~~~~~~~~-~~~h~~~V~sl~~sp~~~~ll~sgs~d-----g~I~iwDl~~~~~~~~~  631 (784)
                      .+++.|+.+    ..+.+||+.+....... +......-..+.+   +..+++.|+.+     ..+.+||..+.+-....
T Consensus        17 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~   93 (302)
T 2xn4_A           17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM---AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA   93 (302)
T ss_dssp             EEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred             EEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE---CCEEEEEeCcCCCccccceEEECCCCCceeeCC
Confidence            345555543    35778888765532211 1111111112222   34477776644     35888998876544332


Q ss_pred             cCC----eeEEEEecCCCEEEEEECC-----CcEEEEECCCCeEEEE--EeCCCCCEEEEEEcCCCCEEEEEe-------
Q 047260          632 KGG----TAQVRFQPRIGQLLAAASD-----KVVSIFDIETDRQTHS--LQGHAELVNYICWDTNGDYLASVS-------  693 (784)
Q Consensus       632 ~~~----v~~v~fsp~~~~Ll~~s~D-----g~I~IwDl~t~~~i~~--l~~h~~~V~sl~~spdg~~Lasgs-------  693 (784)
                      ..+    -..++. -++..++.|+.+     ..+.+||+.+.+-...  +.........+.+  ++++++.|+       
T Consensus        94 ~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~  170 (302)
T 2xn4_A           94 NMRDRRSTLGAAV-LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQ  170 (302)
T ss_dssp             CCSSCCBSCEEEE-ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTE
T ss_pred             CCCccccceEEEE-ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCc
Confidence            211    112222 255566666654     3578899887653322  1111111222222  556655554       


Q ss_pred             -CCeEEEEeCCCCceEEE--eccCCCceEEEEEecCCCEEEEEECC-----CeEEEEECCCCceEEecccCC--ceEEEE
Q 047260          694 -QNLVKVWSMASGECIQE--LSSNGNQFHSCVFHPSYSTLLVVGGI-----SSLELWNMAENKSMTIAAHEN--IISALA  763 (784)
Q Consensus       694 -dd~I~IwDl~t~~~i~~--l~~~~~~I~sl~fspdg~~L~s~s~d-----g~I~Iwdl~~~~~~~~~~h~~--~V~sla  763 (784)
                       .+.+.+||+.+.+-...  +..... -.+++.. ++..++.|+.+     ..+.+||+.+++-..+.....  .-.+++
T Consensus       171 ~~~~~~~yd~~~~~W~~~~~~p~~r~-~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~  248 (302)
T 2xn4_A          171 CLSTVECYNATTNEWTYIAEMSTRRS-GAGVGVL-NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVC  248 (302)
T ss_dssp             ECCCEEEEETTTTEEEEECCCSSCCB-SCEEEEE-TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE
T ss_pred             cccEEEEEeCCCCcEEECCCCccccc-cccEEEE-CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEE
Confidence             13588999987654322  221111 1223322 55566666654     369999998876554432211  111122


Q ss_pred             EeCCCCEEEEEECCC
Q 047260          764 QSPVTGMVASASHDS  778 (784)
Q Consensus       764 fspdg~~LaSgs~DG  778 (784)
                       .-++.+++.|+.++
T Consensus       249 -~~~~~i~v~GG~~~  262 (302)
T 2xn4_A          249 -AVNGLLYVVGGDDG  262 (302)
T ss_dssp             -EETTEEEEECCBCS
T ss_pred             -EECCEEEEECCcCC
Confidence             22567777777654

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.82  E-value=0.043  Score=60.17  Aligned_cols=129  Identities=19%  Similarity=0.249  Sum_probs=90.0

Q ss_pred             CCcEEEEECCCCeEEEEEeCC----CCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCc------------eEEEecc---
Q 047260          653 DKVVSIFDIETDRQTHSLQGH----AELVNYICWDTNGDYLASVSQNLVKVWSMASGE------------CIQELSS---  713 (784)
Q Consensus       653 Dg~I~IwDl~t~~~i~~l~~h----~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~------------~i~~l~~---  713 (784)
                      ++.||.-++......+.+...    ...|..+..+|+|.+||..++..|.|..+..+.            ..+.+..   
T Consensus        40 ~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~  119 (452)
T 3pbp_A           40 DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEE  119 (452)
T ss_dssp             TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGC
T ss_pred             CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCc
Confidence            366777776644334444432    235788999999999999999999999887321            1223332   


Q ss_pred             ---CCCceEEEEEecCC---CEEEEEECCCeEEEEECCCCce--EEe---------cccCCceEEEEEeCCCCEEEEEE-
Q 047260          714 ---NGNQFHSCVFHPSY---STLLVVGGISSLELWNMAENKS--MTI---------AAHENIISALAQSPVTGMVASAS-  775 (784)
Q Consensus       714 ---~~~~I~sl~fspdg---~~L~s~s~dg~I~Iwdl~~~~~--~~~---------~~h~~~V~slafspdg~~LaSgs-  775 (784)
                         ...+|..+.|||-+   ..|++-..|+.|++||+.....  ..+         ......|.+++|..++-.|+..+ 
T Consensus       120 ~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~  199 (452)
T 3pbp_A          120 EVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNT  199 (452)
T ss_dssp             C--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEEC
T ss_pred             ccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEec
Confidence               25679999999964   5799999999999999986221  111         12336789999999877666655 


Q ss_pred             -CCCcEE
Q 047260          776 -HDSSVK  781 (784)
Q Consensus       776 -~DG~V~  781 (784)
                       .+|.|+
T Consensus       200 t~~GDIY  206 (452)
T 3pbp_A          200 TEGGDIF  206 (452)
T ss_dssp             TTSCEEE
T ss_pred             CCCCCEE
Confidence             777775

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.81  E-value=0.13  Score=53.95  Aligned_cols=224  Identities=8%  Similarity=0.022  Sum_probs=111.4

Q ss_pred             EEEEEeCCCeEEEEECCCCceee-ecCCCCCCeEEEEEccCCCEEEEEeC----C-------CeEEEEcCCCCcceeee-
Q 047260          521 LLASSGHDRKVVLWNMDTLQTES-TPEDHKSVVTDVRFRPNSSQLATASV----D-------KSVRLWDAANPNFCSQA-  587 (784)
Q Consensus       521 ~Lasgs~Dg~I~IWd~~t~~~~~-~l~~h~~~It~i~fspdg~~Latgs~----D-------g~I~IWdl~~~~~~~~~-  587 (784)
                      +++.|+  ..+.+||..+.+-.. .+..............++.+++.|+.    +       ..+.+||..+....... 
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~   84 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP   84 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC
T ss_pred             EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC
Confidence            344555  569999998766432 22111122223333347778888874    1       12778888876532111 


Q ss_pred             ccCCCCCeEEEEEcCCCCcEEEEEeCC--------CeEEEEeCCCCeeEEeec--CC-eeEEEEecCCCEEEEEEC----
Q 047260          588 YTGHSSPIMSLDFHPKKTDLFCFCDND--------NEIQYWSINPFLCTHITK--GG-TAQVRFQPRIGQLLAAAS----  652 (784)
Q Consensus       588 ~~~h~~~V~sl~~sp~~~~ll~sgs~d--------g~I~iwDl~~~~~~~~~~--~~-v~~v~fsp~~~~Ll~~s~----  652 (784)
                      ..........+.+   +..+++.|+.+        ..+.+||+.+.+-.....  .+ ....+...++..++.|+.    
T Consensus        85 ~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~  161 (315)
T 4asc_A           85 LPSPRCLFGLGEA---LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDR  161 (315)
T ss_dssp             BSSCEESCEEEEE---TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTS
T ss_pred             CCcchhceeEEEE---CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCC
Confidence            1100011112222   34466666632        458899998765433322  11 111122234455566654    


Q ss_pred             --CCcEEEEECCCCeEEEE--EeCCCCCEEEEEEcCCCCEEEEEe-CC-----eEEEEeCCCCceEEEeccCCCc-eEEE
Q 047260          653 --DKVVSIFDIETDRQTHS--LQGHAELVNYICWDTNGDYLASVS-QN-----LVKVWSMASGECIQELSSNGNQ-FHSC  721 (784)
Q Consensus       653 --Dg~I~IwDl~t~~~i~~--l~~h~~~V~sl~~spdg~~Lasgs-dd-----~I~IwDl~t~~~i~~l~~~~~~-I~sl  721 (784)
                        -..+.+||..+.+-...  +........++.+  ++++++.|+ ++     .+.+||+.+.+-...-...... -.++
T Consensus       162 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~  239 (315)
T 4asc_A          162 KCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSL  239 (315)
T ss_dssp             CBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEE
T ss_pred             cccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeE
Confidence              24689999987643221  1111111222222  566666655 22     6889999887443322111111 1223


Q ss_pred             EEecCCCEEEEEECC--------------CeEEEEECCCCceEEe
Q 047260          722 VFHPSYSTLLVVGGI--------------SSLELWNMAENKSMTI  752 (784)
Q Consensus       722 ~fspdg~~L~s~s~d--------------g~I~Iwdl~~~~~~~~  752 (784)
                      +.. ++..++.|+.+              ..|.+||+.+.+-..+
T Consensus       240 ~~~-~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~  283 (315)
T 4asc_A          240 VSL-VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV  283 (315)
T ss_dssp             EEE-TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred             EEE-CCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence            322 55666666653              2478899888765433

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.63  E-value=0.094  Score=54.98  Aligned_cols=207  Identities=10%  Similarity=0.002  Sum_probs=102.0

Q ss_pred             EEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeC-----C------CeEEEEeCCCCeeEEee
Q 047260          563 QLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDN-----D------NEIQYWSINPFLCTHIT  631 (784)
Q Consensus       563 ~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~-----d------g~I~iwDl~~~~~~~~~  631 (784)
                      +++.|+  ..+.+||..+.+....................++ .+++.|+.     .      ..+.+||..+.+-....
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~   83 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKEN-QVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP   83 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTC-CEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC
T ss_pred             EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECC-EEEEEcCcccCCCCCccccccceEEecCCCCeEEECC
Confidence            344555  5799999998775432222211222222223344 46666662     1      13778888876543322


Q ss_pred             c--CCe--eEEEEecCCCEEEEEECC--------CcEEEEECCCCeEEEE--EeCCCCCEEEEEEcCCCCEEEEEeC---
Q 047260          632 K--GGT--AQVRFQPRIGQLLAAASD--------KVVSIFDIETDRQTHS--LQGHAELVNYICWDTNGDYLASVSQ---  694 (784)
Q Consensus       632 ~--~~v--~~v~fsp~~~~Ll~~s~D--------g~I~IwDl~t~~~i~~--l~~h~~~V~sl~~spdg~~Lasgsd---  694 (784)
                      .  .+.  ..++. -++..++.|+.+        ..+.+||..+.+-...  +........ ++. -++++++.|+.   
T Consensus        84 ~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~-~~~-~~~~iyv~GG~~~~  160 (315)
T 4asc_A           84 PLPSPRCLFGLGE-ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHT-VLS-HMDLVYVIGGKGSD  160 (315)
T ss_dssp             CBSSCEESCEEEE-ETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCE-EEE-ETTEEEEECCBCTT
T ss_pred             CCCcchhceeEEE-ECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCccccee-EEE-ECCEEEEEeCCCCC
Confidence            2  111  11222 244455555521        5689999987642221  111111112 222 35566666553   


Q ss_pred             ----CeEEEEeCCCCceEEEeccCCCc-eEEEEEecCCCEEEEEECCC-----eEEEEECCCCceEEecccC--CceEEE
Q 047260          695 ----NLVKVWSMASGECIQELSSNGNQ-FHSCVFHPSYSTLLVVGGIS-----SLELWNMAENKSMTIAAHE--NIISAL  762 (784)
Q Consensus       695 ----d~I~IwDl~t~~~i~~l~~~~~~-I~sl~fspdg~~L~s~s~dg-----~I~Iwdl~~~~~~~~~~h~--~~V~sl  762 (784)
                          +.+.+||+.+.+-...-...... -.+++.. ++..++.|+.++     .+.+||+.+.+-..+....  ..-.++
T Consensus       161 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~  239 (315)
T 4asc_A          161 RKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH-DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSL  239 (315)
T ss_dssp             SCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEE
T ss_pred             CcccceEEEEeCCCCeEEECCCCCCchhceEEEEE-CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeE
Confidence                26899999876432211111111 1222222 556677776553     5889999887655443211  111122


Q ss_pred             EEeCCCCEEEEEECC
Q 047260          763 AQSPVTGMVASASHD  777 (784)
Q Consensus       763 afspdg~~LaSgs~D  777 (784)
                      +. -++++++.|+.+
T Consensus       240 ~~-~~~~l~v~GG~~  253 (315)
T 4asc_A          240 VS-LVGTLYAIGGFA  253 (315)
T ss_dssp             EE-ETTEEEEEEEEE
T ss_pred             EE-ECCEEEEECCcc
Confidence            22 256777777764

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.53  E-value=0.32  Score=50.90  Aligned_cols=223  Identities=6%  Similarity=0.014  Sum_probs=107.8

Q ss_pred             EEEEEeCCCeEEEEECCCCceeee-cCCCCCCeEEEEEccCCCEEEEEeC----CC-------eEEEEcCCCCcceeee-
Q 047260          521 LLASSGHDRKVVLWNMDTLQTEST-PEDHKSVVTDVRFRPNSSQLATASV----DK-------SVRLWDAANPNFCSQA-  587 (784)
Q Consensus       521 ~Lasgs~Dg~I~IWd~~t~~~~~~-l~~h~~~It~i~fspdg~~Latgs~----Dg-------~I~IWdl~~~~~~~~~-  587 (784)
                      +++.|+.  .+.+||..+.+-... +..............++.+++.|+.    ++       .+.+||..+....... 
T Consensus        18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~   95 (318)
T 2woz_A           18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPP   95 (318)
T ss_dssp             EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSC
T ss_pred             hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCC
Confidence            3444443  378899887664331 1111111222233447778888873    12       2778888775532211 


Q ss_pred             ccCCCCCeEEEEEcCCCCcEEEEEeCC-------CeEEEEeCCCCeeEEeec--CCe-eEEEEecCCCEEEEEEC-----
Q 047260          588 YTGHSSPIMSLDFHPKKTDLFCFCDND-------NEIQYWSINPFLCTHITK--GGT-AQVRFQPRIGQLLAAAS-----  652 (784)
Q Consensus       588 ~~~h~~~V~sl~~sp~~~~ll~sgs~d-------g~I~iwDl~~~~~~~~~~--~~v-~~v~fsp~~~~Ll~~s~-----  652 (784)
                      ..........+.+  + ..+++.|+.+       ..+.+||+.+.+-.....  ... ...+...++..++.|+.     
T Consensus        96 ~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~  172 (318)
T 2woz_A           96 LPSARCLFGLGEV--D-DKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKK  172 (318)
T ss_dssp             BSSCBCSCEEEEE--T-TEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSC
T ss_pred             CCccccccceEEE--C-CEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCC
Confidence            1111111122222  3 3466666643       357888988765443322  111 11112234455555553     


Q ss_pred             -CCcEEEEECCCCeEEEE--EeCCCCCEEEEEEcCCCCEEEEEe-C-----CeEEEEeCCCCceEEE--eccCCCceEEE
Q 047260          653 -DKVVSIFDIETDRQTHS--LQGHAELVNYICWDTNGDYLASVS-Q-----NLVKVWSMASGECIQE--LSSNGNQFHSC  721 (784)
Q Consensus       653 -Dg~I~IwDl~t~~~i~~--l~~h~~~V~sl~~spdg~~Lasgs-d-----d~I~IwDl~t~~~i~~--l~~~~~~I~sl  721 (784)
                       -..+.+||+.+.+-...  +........++.+  ++++++.|+ +     +.+.+||+.+.+-...  +..... -.++
T Consensus       173 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-~~~~  249 (318)
T 2woz_A          173 CTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERS-SISL  249 (318)
T ss_dssp             BCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCB-SCEE
T ss_pred             ccceEEEEcCCCCEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCccc-ceEE
Confidence             24699999988753322  1111111222222  556666654 1     2678899887653321  211111 1222


Q ss_pred             EEecCCCEEEEEECC--------------CeEEEEECCCCceEEe
Q 047260          722 VFHPSYSTLLVVGGI--------------SSLELWNMAENKSMTI  752 (784)
Q Consensus       722 ~fspdg~~L~s~s~d--------------g~I~Iwdl~~~~~~~~  752 (784)
                      +. -++..++.|+.+              ..|.+||+.+.+-..+
T Consensus       250 ~~-~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~  293 (318)
T 2woz_A          250 VS-LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM  293 (318)
T ss_dssp             EE-ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred             EE-ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence            22 345556665543              3588899888765543

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.43  E-value=0.13  Score=54.83  Aligned_cols=226  Identities=9%  Similarity=0.032  Sum_probs=109.9

Q ss_pred             CCCEEEEEeCC-CeEEEEECCC--Cc--eeeecC-CCCCCeEEEEEccCCCEEEEEeC-C---------CeEEEEcCCCC
Q 047260          518 DGKLLASSGHD-RKVVLWNMDT--LQ--TESTPE-DHKSVVTDVRFRPNSSQLATASV-D---------KSVRLWDAANP  581 (784)
Q Consensus       518 dg~~Lasgs~D-g~I~IWd~~t--~~--~~~~l~-~h~~~It~i~fspdg~~Latgs~-D---------g~I~IWdl~~~  581 (784)
                      ++++++.|+.+ ..+.+||+.+  .+  .+..+. .....-.++.+  ++++++.|+. +         ..+.+||+.+.
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~   96 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN   96 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence            56666666643 4688999863  22  222222 11112222233  5667777765 2         46889999876


Q ss_pred             cceeeeccC-CC-CCeEEEEEcCCCCcEEEEEeCC---------------------------------------CeEEEE
Q 047260          582 NFCSQAYTG-HS-SPIMSLDFHPKKTDLFCFCDND---------------------------------------NEIQYW  620 (784)
Q Consensus       582 ~~~~~~~~~-h~-~~V~sl~~sp~~~~ll~sgs~d---------------------------------------g~I~iw  620 (784)
                      ......... .. ....++.  . +..+++.|+.+                                       ..+.+|
T Consensus        97 ~W~~~~~~~p~~r~~~~~~~--~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~y  173 (357)
T 2uvk_A           97 SWVKLMSHAPMGMAGHVTFV--H-NGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSF  173 (357)
T ss_dssp             EEEECSCCCSSCCSSEEEEE--E-TTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEE
T ss_pred             cEEECCCCCCcccccceEEE--E-CCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEE
Confidence            532221111 11 1122222  2 34477777654                                       578999


Q ss_pred             eCCCCeeEEeec--C--Ce-eEEEEecCCCEEEEEEC------CCcEEEEEC--CCCeEEEEEeC---CCCCEEEEEEcC
Q 047260          621 SINPFLCTHITK--G--GT-AQVRFQPRIGQLLAAAS------DKVVSIFDI--ETDRQTHSLQG---HAELVNYICWDT  684 (784)
Q Consensus       621 Dl~~~~~~~~~~--~--~v-~~v~fsp~~~~Ll~~s~------Dg~I~IwDl--~t~~~i~~l~~---h~~~V~sl~~sp  684 (784)
                      |+.+.+-.....  .  .. .+++.. ++..++.|+.      ...+.+||+  .+.+ ...+..   ........+...
T Consensus       174 d~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~-W~~~~~~~~~~~~~~~~~~~~  251 (357)
T 2uvk_A          174 DPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLK-WNKLAPVSSPDGVAGGFAGIS  251 (357)
T ss_dssp             ETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CE-EEECCCSSTTTCCBSCEEEEE
T ss_pred             eCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCc-EEecCCCCCCcccccceEEEE
Confidence            998755443322  1  11 222222 4445555543      346777887  4332 222211   111111112223


Q ss_pred             CCCEEEEEeC-----------------------CeEEEEeCCCCc--eEEEeccCCCceEEEEEecCCCEEEEEECCC--
Q 047260          685 NGDYLASVSQ-----------------------NLVKVWSMASGE--CIQELSSNGNQFHSCVFHPSYSTLLVVGGIS--  737 (784)
Q Consensus       685 dg~~Lasgsd-----------------------d~I~IwDl~t~~--~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg--  737 (784)
                      ++++++.|+.                       ..+.+||+.+.+  .+..+......  ..++.-+++.++.|+.++  
T Consensus       252 ~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~--~~~~~~~~~i~v~GG~~~~~  329 (357)
T 2uvk_A          252 NDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAY--GVSLPWNNSLLIIGGETAGG  329 (357)
T ss_dssp             TTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBS--SEEEEETTEEEEEEEECGGG
T ss_pred             CCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCccc--ceeEEeCCEEEEEeeeCCCC
Confidence            5566665541                       147789988754  34444332222  222334667777887652  


Q ss_pred             ----eEEEEECCCCceEEe
Q 047260          738 ----SLELWNMAENKSMTI  752 (784)
Q Consensus       738 ----~I~Iwdl~~~~~~~~  752 (784)
                          .|.++++++++.+..
T Consensus       330 ~~~~~v~~l~~~~~~~~~~  348 (357)
T 2uvk_A          330 KAVTDSVLITVKDNKVTVQ  348 (357)
T ss_dssp             CEEEEEEEEEC-CCSCEEE
T ss_pred             CEeeeEEEEEEcCcEeEee
Confidence                477779988887643

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.34  E-value=1.4  Score=48.89  Aligned_cols=106  Identities=9%  Similarity=0.120  Sum_probs=62.2

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcee--eecCC------CCCCeEEEEEccC---CCEEEEEeC------
Q 047260          507 NSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTE--STPED------HKSVVTDVRFRPN---SSQLATASV------  569 (784)
Q Consensus       507 ~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~--~~l~~------h~~~It~i~fspd---g~~Latgs~------  569 (784)
                      -...+.|+|.|+|+++++-...+.|++++..+++..  ..+..      ....+..|+|+|+   +..|+++..      
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~  105 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence            446789999999997776544457988886555432  22221      2456789999995   555555432      


Q ss_pred             -------CCeEEEEcCCCCc-------ceeeecc-CCCCCeEEEEEcCCCCcEEEEEe
Q 047260          570 -------DKSVRLWDAANPN-------FCSQAYT-GHSSPIMSLDFHPKKTDLFCFCD  612 (784)
Q Consensus       570 -------Dg~I~IWdl~~~~-------~~~~~~~-~h~~~V~sl~~sp~~~~ll~sgs  612 (784)
                             ...|.-|++....       .+...+. ........|+|.|++..++.+++
T Consensus       106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence                   1245555543221       1111111 11234789999999974444443

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.32  E-value=0.28  Score=51.38  Aligned_cols=208  Identities=11%  Similarity=0.050  Sum_probs=99.6

Q ss_pred             EEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeC----CC-------eEEEEeCCCCeeEEee
Q 047260          563 QLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDN----DN-------EIQYWSINPFLCTHIT  631 (784)
Q Consensus       563 ~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~----dg-------~I~iwDl~~~~~~~~~  631 (784)
                      +++.|+.  .+.+||..+.+....................+ ..+++.|+.    ++       .+.+||..+.+-....
T Consensus        18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~-~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~   94 (318)
T 2woz_A           18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQ-NQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLP   94 (318)
T ss_dssp             EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSS-SCEEEEESSCC-------CCCBEEEEEETTTTEEEECS
T ss_pred             hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEEC-CEEEEECCcccCccccCCCccccEEEEeCCCCcEEECC
Confidence            3444443  48899998876433222211111122222233 447777762    12       2778888765544332


Q ss_pred             c--CC--eeEEEEecCCCEEEEEECC-------CcEEEEECCCCeEEEEEeCCCCCE-EEEEEcCCCCEEEEEeC-----
Q 047260          632 K--GG--TAQVRFQPRIGQLLAAASD-------KVVSIFDIETDRQTHSLQGHAELV-NYICWDTNGDYLASVSQ-----  694 (784)
Q Consensus       632 ~--~~--v~~v~fsp~~~~Ll~~s~D-------g~I~IwDl~t~~~i~~l~~h~~~V-~sl~~spdg~~Lasgsd-----  694 (784)
                      .  .+  ...++. -++..++.|+.+       ..+.+||..+.+-...-....... .+++. .++++++.|+.     
T Consensus        95 ~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~  172 (318)
T 2woz_A           95 PLPSARCLFGLGE-VDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKK  172 (318)
T ss_dssp             CBSSCBCSCEEEE-ETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSC
T ss_pred             CCCccccccceEE-ECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCC
Confidence            1  11  112222 245566666643       358889988765332211111111 11222 35666665541     


Q ss_pred             --CeEEEEeCCCCceEEEeccCC-CceEEEEEecCCCEEEEEECC-----CeEEEEECCCCceEEecccCC--ceEEEEE
Q 047260          695 --NLVKVWSMASGECIQELSSNG-NQFHSCVFHPSYSTLLVVGGI-----SSLELWNMAENKSMTIAAHEN--IISALAQ  764 (784)
Q Consensus       695 --d~I~IwDl~t~~~i~~l~~~~-~~I~sl~fspdg~~L~s~s~d-----g~I~Iwdl~~~~~~~~~~h~~--~V~slaf  764 (784)
                        +.+.+||+.+.+-...-.... ..-.+++.. ++..++.|+.+     ..+.+||+.+.+-..+.....  .-.+++ 
T Consensus       173 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-  250 (318)
T 2woz_A          173 CTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH-KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLV-  250 (318)
T ss_dssp             BCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEE-
T ss_pred             ccceEEEEcCCCCEEEECCCCCCCcccceEEEE-CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEE-
Confidence              268999998875332211111 111233332 55566666543     368899998876554332111  111222 


Q ss_pred             eCCCCEEEEEECC
Q 047260          765 SPVTGMVASASHD  777 (784)
Q Consensus       765 spdg~~LaSgs~D  777 (784)
                      .-++++++.|+.+
T Consensus       251 ~~~~~i~v~GG~~  263 (318)
T 2woz_A          251 SLAGSLYAIGGFA  263 (318)
T ss_dssp             EETTEEEEECCBC
T ss_pred             EECCEEEEECCee
Confidence            2346677777654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.13  E-value=0.26  Score=61.46  Aligned_cols=213  Identities=10%  Similarity=0.158  Sum_probs=127.3

Q ss_pred             CCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcE
Q 047260          528 DRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDL  607 (784)
Q Consensus       528 Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~l  607 (784)
                      ...|.|.|+.+...+.+-   .-.--+.-.+|..+.||.-. ..++.|+|+++... .+.+.- ..+|.-=.|-.....-
T Consensus        47 ~~~vvIidl~~~~~~~rr---pi~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~k-lks~~~-~e~VvfWkWis~~~l~  120 (1630)
T 1xi4_A           47 QAQVVIIDMNDPSNPIRR---PISADSAIMNPASKVIALKA-GKTLQIFNIEMKSK-MKAHTM-TDDVTFWKWISLNTVA  120 (1630)
T ss_pred             CceEEEEECCCCCCcccc---cccchhhccCCCcceEEEec-CCeEEEeehHHhhh-hccccc-CCCceEEEecCCCeeE
Confidence            447999999876544221   11122344677777776654 67899999988653 332222 3456555666554322


Q ss_pred             EEEEeCCCeEEEEeCCCC-eeEEee-------cCCeeEEEEecCCCEEEEEEC-------CCcEEEEECCCCeEEEEEeC
Q 047260          608 FCFCDNDNEIQYWSINPF-LCTHIT-------KGGTAQVRFQPRIGQLLAAAS-------DKVVSIFDIETDRQTHSLQG  672 (784)
Q Consensus       608 l~sgs~dg~I~iwDl~~~-~~~~~~-------~~~v~~v~fsp~~~~Ll~~s~-------Dg~I~IwDl~t~~~i~~l~~  672 (784)
                      +++   +..|+.|++... .....+       ...|...+.+++.++++..+-       .|.+.+|..+.+. -..+.|
T Consensus       121 lVT---~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~ieg  196 (1630)
T 1xi4_A          121 LVT---DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEG  196 (1630)
T ss_pred             EEc---CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhhH
Confidence            332   678999999631 111111       244556667888888776553       4788888877542 234556


Q ss_pred             CCCCEEEEEEcC---CCCEEEEEeC----CeEEEEeCCCC---ce------EEEeccC---CCceEEEEEecCCCEEEEE
Q 047260          673 HAELVNYICWDT---NGDYLASVSQ----NLVKVWSMASG---EC------IQELSSN---GNQFHSCVFHPSYSTLLVV  733 (784)
Q Consensus       673 h~~~V~sl~~sp---dg~~Lasgsd----d~I~IwDl~t~---~~------i~~l~~~---~~~I~sl~fspdg~~L~s~  733 (784)
                      |.+....+....   ...+++.+..    +.+.|.++...   ..      +..+...   .+-..++..++....++..
T Consensus       197 ha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~i  276 (1630)
T 1xi4_A          197 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI  276 (1630)
T ss_pred             hHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEE
Confidence            665544444321   1223333332    48888888542   11      1111111   2234567788888899999


Q ss_pred             ECCCeEEEEECCCCceE
Q 047260          734 GGISSLELWNMAENKSM  750 (784)
Q Consensus       734 s~dg~I~Iwdl~~~~~~  750 (784)
                      +..|.|++||+.++.++
T Consensus       277 tk~G~~~~~d~~t~~~i  293 (1630)
T 1xi4_A          277 TKYGYIHLYDLETGTCI  293 (1630)
T ss_pred             ecCceEEEEecccchhh
Confidence            99999999999999876

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.09  E-value=0.26  Score=52.74  Aligned_cols=187  Identities=10%  Similarity=0.028  Sum_probs=98.5

Q ss_pred             CEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEE--cCCCCcEEEEE-eCCCeEEEEeCCCCeeEEeecC----C
Q 047260          562 SQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDF--HPKKTDLFCFC-DNDNEIQYWSINPFLCTHITKG----G  634 (784)
Q Consensus       562 ~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~--sp~~~~ll~sg-s~dg~I~iwDl~~~~~~~~~~~----~  634 (784)
                      ..++.++.||.|.-+|.++++..-..-.....++....-  .+.+..+++.. ..||.|..++..++.....+..    .
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            468889999999999998877433322221122222110  01122344443 5799999999887654433321    0


Q ss_pred             eeEEEEe-----------cCCCEEEEEECCCcEEEEECCCCeEEEEEeCCC--CC-----EEEEEEc-----CCCCEEEE
Q 047260          635 TAQVRFQ-----------PRIGQLLAAASDKVVSIFDIETDRQTHSLQGHA--EL-----VNYICWD-----TNGDYLAS  691 (784)
Q Consensus       635 v~~v~fs-----------p~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~--~~-----V~sl~~s-----pdg~~Las  691 (784)
                      ...+...           ..++.+++++.++.+...|+++|+.+..+....  ..     ..|....     ..+..|+.
T Consensus        91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i  170 (339)
T 2be1_A           91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI  170 (339)
T ss_dssp             TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred             ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence            1112211           156788999999999999999999999886421  11     1111110     12345555


Q ss_pred             EeCC-eEEEEeCCCCceEEEe-----ccCCCc--e-EEEEEecCCCEEEEEECCCeEEEEECCCCceEE
Q 047260          692 VSQN-LVKVWSMASGECIQEL-----SSNGNQ--F-HSCVFHPSYSTLLVVGGISSLELWNMAENKSMT  751 (784)
Q Consensus       692 gsdd-~I~IwDl~t~~~i~~l-----~~~~~~--I-~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~  751 (784)
                      +..+ .+.+.+ ++|+ +..+     ......  + ..-..+.++.+ ++++.||.|..+|..++..+-
T Consensus       171 g~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          171 GKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW  236 (339)
T ss_dssp             EEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred             ecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence            5544 666665 4443 2111     111000  0 00000123444 557778888888877776553

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.95  E-value=2.7  Score=46.59  Aligned_cols=103  Identities=8%  Similarity=0.076  Sum_probs=60.8

Q ss_pred             CCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcce-eeeccC------CCCCeEEEEEcCC---CCcEEEEEeC------
Q 047260          550 SVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFC-SQAYTG------HSSPIMSLDFHPK---KTDLFCFCDN------  613 (784)
Q Consensus       550 ~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~-~~~~~~------h~~~V~sl~~sp~---~~~ll~sgs~------  613 (784)
                      ...+.|+|.|+|+++++-...+.|++++..++... +..+..      ....+..|+|+|+   +..++++-+.      
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~  106 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence            45679999999987776544457888876544321 111111      2355779999996   5556555442      


Q ss_pred             ------CCeEEEEeCCCC-------eeEE-eec----CCeeEEEEecCCCEEEEEEC
Q 047260          614 ------DNEIQYWSINPF-------LCTH-ITK----GGTAQVRFQPRIGQLLAAAS  652 (784)
Q Consensus       614 ------dg~I~iwDl~~~-------~~~~-~~~----~~v~~v~fsp~~~~Ll~~s~  652 (784)
                            ...|.-|++...       +.+. .+.    .....++|.|++..+++.+.
T Consensus       107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence                  235555554321       1111 111    23578999999987666553

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=95.94  E-value=2.4  Score=45.74  Aligned_cols=253  Identities=9%  Similarity=-0.020  Sum_probs=119.3

Q ss_pred             CCceEEEEEcC--CCCEEEEEeCCC----eEEEEECCCCceeeecC------C--------CCCCeEEEEEcc-C-CCEE
Q 047260          507 NSKVTCCHFSS--DGKLLASSGHDR----KVVLWNMDTLQTESTPE------D--------HKSVVTDVRFRP-N-SSQL  564 (784)
Q Consensus       507 ~~~V~~l~fsp--dg~~Lasgs~Dg----~I~IWd~~t~~~~~~l~------~--------h~~~It~i~fsp-d-g~~L  564 (784)
                      ...|.+|++.|  ++.++ +++..|    .|...+ +.++.-..+.      .        +...|.+|++.| + ...|
T Consensus        54 ~~~v~~i~~dp~~~~~l~-~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l  131 (394)
T 3b7f_A           54 GHTIHHIVQDPREPERML-MAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTW  131 (394)
T ss_dssp             TSEEEEEEECSSSTTCEE-EEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCE
T ss_pred             CCceEEEEECCCCCCeEE-EEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEE
Confidence            45699999998  44444 444444    344332 2222212111      1        112578899987 2 4566


Q ss_pred             EEEeCCCeEEEEcCCCCcceee-ecc----------------CCCCCeEEEEEcCCC-CcEEEEEeCCCeEEEEeCCCCe
Q 047260          565 ATASVDKSVRLWDAANPNFCSQ-AYT----------------GHSSPIMSLDFHPKK-TDLFCFCDNDNEIQYWSINPFL  626 (784)
Q Consensus       565 atgs~Dg~I~IWdl~~~~~~~~-~~~----------------~h~~~V~sl~~sp~~-~~ll~sgs~dg~I~iwDl~~~~  626 (784)
                      +.+...+.|...+-........ ...                .....|.+|.++|.. ..+++... ++.|...+-....
T Consensus       132 ~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~-~ggl~~s~DgG~t  210 (394)
T 3b7f_A          132 YAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMS-SGGVFESTDAGTD  210 (394)
T ss_dssp             EEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEE-TBEEEEESSTTSS
T ss_pred             EEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEEC-CCCEEEECCCCCC
Confidence            6666666555443221111111 110                122357899998853 33444433 4444444322111


Q ss_pred             eEEee---------------cCCeeEEEEecC-CCEEEEEECCCcEEEEECCCCeEEEEEeC--CC---CCEEEEEEcCC
Q 047260          627 CTHIT---------------KGGTAQVRFQPR-IGQLLAAASDKVVSIFDIETDRQTHSLQG--HA---ELVNYICWDTN  685 (784)
Q Consensus       627 ~~~~~---------------~~~v~~v~fsp~-~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~--h~---~~V~sl~~spd  685 (784)
                      -....               ...+.++.++|. ...++++...+ |...+- .++....+..  ..   ..+.++.++|.
T Consensus       211 W~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~D-~G~tW~~~~~~l~~~~~~~~~~i~~~p~  288 (394)
T 3b7f_A          211 WKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMDR-REGVWKRIGDAMPREVGDIGFPIVVHQR  288 (394)
T ss_dssp             CEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEET-TTTEEECGGGGSCTTTCSCEEEEEECSS
T ss_pred             ceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeCC-CCCcceECCCCCCCCCccceEEEEECCC
Confidence            11111               023678888886 36677766544 544432 2333322221  11   34567888763


Q ss_pred             --CCEEEEEe-----------CCeEEEEeCCC-CceEEEecc--CC-C-----ceEEEEEecCC-CEEEEEECCCeEEEE
Q 047260          686 --GDYLASVS-----------QNLVKVWSMAS-GECIQELSS--NG-N-----QFHSCVFHPSY-STLLVVGGISSLELW  742 (784)
Q Consensus       686 --g~~Lasgs-----------dd~I~IwDl~t-~~~i~~l~~--~~-~-----~I~sl~fspdg-~~L~s~s~dg~I~Iw  742 (784)
                        +.+++...           ++...||...+ ++.-..+..  .. .     ....++++|.. ..|++++.++.|..-
T Consensus       289 ~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~~S  368 (394)
T 3b7f_A          289 DPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEIWAS  368 (394)
T ss_dssp             CTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCEEEE
T ss_pred             CCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeEEEE
Confidence              34444321           12345555444 333222221  11 0     11357788754 457777666665543


Q ss_pred             ECCCCce-EEecccCCceEEEEEe
Q 047260          743 NMAENKS-MTIAAHENIISALAQS  765 (784)
Q Consensus       743 dl~~~~~-~~~~~h~~~V~slafs  765 (784)
                      + +.++. ..+..+-..|.+|.|.
T Consensus       369 ~-D~G~tW~~~~~~lp~~~~v~~~  391 (394)
T 3b7f_A          369 A-DEGEHWQCIASHLPHIYAVQSA  391 (394)
T ss_dssp             S-STTSBCEEEECSCSCEEEEEEE
T ss_pred             C-CCCCCceEcccCCCCeeEEEEe
Confidence            2 33332 2333444457777764

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.85  E-value=0.26  Score=61.47  Aligned_cols=232  Identities=13%  Similarity=0.190  Sum_probs=138.9

Q ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCC--
Q 047260          514 HFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGH--  591 (784)
Q Consensus       514 ~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h--  591 (784)
                      -.+|..+.||.-. ..++.|||+++...+..+.- ...|.-=.|-.+. .|+..+ +..|.-|++.....+.+.+..|  
T Consensus        72 IMnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~  147 (1630)
T 1xi4_A           72 IMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSS  147 (1630)
T ss_pred             ccCCCcceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCCC-eeEEEc-CCeEEEeccCCCCccHHHHhcchh
Confidence            3566666666544 67899999998877776643 3456666776544 444443 4579999998655566666655  


Q ss_pred             --CCCeEEEEEcCCCCcEEEEEe------CCCeEEEEeCCCCeeEEeecCCee---EEEE--ecCCCEEEEEEC----CC
Q 047260          592 --SSPIMSLDFHPKKTDLFCFCD------NDNEIQYWSINPFLCTHITKGGTA---QVRF--QPRIGQLLAAAS----DK  654 (784)
Q Consensus       592 --~~~V~sl~~sp~~~~ll~sgs------~dg~I~iwDl~~~~~~~~~~~~v~---~v~f--sp~~~~Ll~~s~----Dg  654 (784)
                        ...|..-..+++..+++++|=      -.|.+.+|..+.... ..++++..   .+.+  .+....+++-..    .+
T Consensus       148 L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s-Q~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~  226 (1630)
T 1xi4_A          148 LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGG  226 (1630)
T ss_pred             cccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc-hhhhHhHhhhheeccCCCCCCceEEEEEEecCCCc
Confidence              456777777888888887764      347888888764322 11112111   1111  111122333222    37


Q ss_pred             cEEEEECCCC---eE------EEEEeC---CCCCEEEEEEcCCCCEEEEE-eCCeEEEEeCCCCceEEEeccCCCceEEE
Q 047260          655 VVSIFDIETD---RQ------THSLQG---HAELVNYICWDTNGDYLASV-SQNLVKVWSMASGECIQELSSNGNQFHSC  721 (784)
Q Consensus       655 ~I~IwDl~t~---~~------i~~l~~---h~~~V~sl~~spdg~~Lasg-sdd~I~IwDl~t~~~i~~l~~~~~~I~sl  721 (784)
                      .++|.++...   ..      +..+..   -.+--.++..++.-.++... ..|.|.+||+.++.++..-......|...
T Consensus       227 kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~  306 (1630)
T 1xi4_A          227 KLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVT  306 (1630)
T ss_pred             eEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCCceEEe
Confidence            8888888542   11      001111   12223345555544444444 46699999999999987776666666665


Q ss_pred             EEecCCCEEEEEECCCeEEEEECCCCceE
Q 047260          722 VFHPSYSTLLVVGGISSLELWNMAENKSM  750 (784)
Q Consensus       722 ~fspdg~~L~s~s~dg~I~Iwdl~~~~~~  750 (784)
                      +.+....-++.....|.|.-..+++...+
T Consensus       307 ~~~~~~~g~~~vnr~G~vl~v~v~~~~iv  335 (1630)
T 1xi4_A          307 APHEATAGIIGVNRKGQVLSVCVEEENII  335 (1630)
T ss_pred             ccCCCCCceEEEcCCceEEEEEEccchhh
Confidence            55555455777777787777666665544

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=95.84  E-value=0.54  Score=55.53  Aligned_cols=237  Identities=9%  Similarity=0.040  Sum_probs=125.5

Q ss_pred             EEEE-EcCCCCEEEEEe-----CCCeEEEEECCCCceeee-cC-CCCC------CeEEEEEccCCCEEEEE---------
Q 047260          511 TCCH-FSSDGKLLASSG-----HDRKVVLWNMDTLQTEST-PE-DHKS------VVTDVRFRPNSSQLATA---------  567 (784)
Q Consensus       511 ~~l~-fspdg~~Lasgs-----~Dg~I~IWd~~t~~~~~~-l~-~h~~------~It~i~fspdg~~Latg---------  567 (784)
                      ..+. ++||+++++.+-     +-..|+++|+.+++.+.. +. .-+.      ....++|..+..++++.         
T Consensus       132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~  211 (711)
T 4hvt_A          132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITS  211 (711)
T ss_dssp             EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCT
T ss_pred             eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcCc
Confidence            3344 889999877642     224699999999887642 22 0001      11345887444344432         


Q ss_pred             -eCCCeEEEEcCCCCcc-eeeeccCCCCCe-EEEEEcCCCCc----EEEEEeC---CCeEEEEeCCC--CeeEEeecCCe
Q 047260          568 -SVDKSVRLWDAANPNF-CSQAYTGHSSPI-MSLDFHPKKTD----LFCFCDN---DNEIQYWSINP--FLCTHITKGGT  635 (784)
Q Consensus       568 -s~Dg~I~IWdl~~~~~-~~~~~~~h~~~V-~sl~~sp~~~~----ll~sgs~---dg~I~iwDl~~--~~~~~~~~~~v  635 (784)
                       +....|+.|.+-+... -..++.+....+ .....++++..    ++++.+.   ...+++.|...  ..........-
T Consensus       212 ~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  291 (711)
T 4hvt_A          212 SLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPSD  291 (711)
T ss_dssp             TSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCTT
T ss_pred             CCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCCc
Confidence             1225689998876532 233344433333 34455666664    4554432   24566667652  33222222222


Q ss_pred             eEEEEecCCCEEEEE----------ECCCcEEEEECCCCe-------EEEE-Ee-CCCCCEEEEEEcCCCCEEEEEe-CC
Q 047260          636 AQVRFQPRIGQLLAA----------ASDKVVSIFDIETDR-------QTHS-LQ-GHAELVNYICWDTNGDYLASVS-QN  695 (784)
Q Consensus       636 ~~v~fsp~~~~Ll~~----------s~Dg~I~IwDl~t~~-------~i~~-l~-~h~~~V~sl~~spdg~~Lasgs-dd  695 (784)
                      ..+.....+..++..          ...+.|.++|+.+..       .... +. .....+..+.|..+ .++++.. ++
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~~~  370 (711)
T 4hvt_A          292 ATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYDNV  370 (711)
T ss_dssp             CEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEETT
T ss_pred             ceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEEECC
Confidence            223334444333322          236789999987631       2222 32 23446778888876 4555544 44


Q ss_pred             --eEEEEeCCCCc-eEEE-eccC-CCceEEEEEecCCCEEE-EEECC---CeEEEEECCCCce
Q 047260          696 --LVKVWSMASGE-CIQE-LSSN-GNQFHSCVFHPSYSTLL-VVGGI---SSLELWNMAENKS  749 (784)
Q Consensus       696 --~I~IwDl~t~~-~i~~-l~~~-~~~I~sl~fspdg~~L~-s~s~d---g~I~Iwdl~~~~~  749 (784)
                        .|.++|+.+++ .+.. +... ...+....+.+++..++ +.++.   +.+..+|+. ++.
T Consensus       371 ~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~-~~~  432 (711)
T 4hvt_A          371 VAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT-HEL  432 (711)
T ss_dssp             EEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT-SCE
T ss_pred             EEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC-CcE
Confidence              78889887764 2333 3222 24566566667765444 44433   578888877 443

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=95.80  E-value=0.48  Score=49.30  Aligned_cols=181  Identities=15%  Similarity=0.104  Sum_probs=92.8

Q ss_pred             CCCEEEEEeC----C-----CeEEEEECCCCceeee--cCCCCCCeEEEEEccCCCEEEEEeCC-----CeEEEEcCCCC
Q 047260          518 DGKLLASSGH----D-----RKVVLWNMDTLQTEST--PEDHKSVVTDVRFRPNSSQLATASVD-----KSVRLWDAANP  581 (784)
Q Consensus       518 dg~~Lasgs~----D-----g~I~IWd~~t~~~~~~--l~~h~~~It~i~fspdg~~Latgs~D-----g~I~IWdl~~~  581 (784)
                      ++.+++.|+.    +     ..+.+||..+.+-...  +.........+.+  ++++++.|+.+     ..+.+||+.+.
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~  147 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERD  147 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCC
Confidence            5667777765    2     4588999886543322  2111122222333  66677776643     35888998876


Q ss_pred             cceeee-ccCCCCCeEEEEEcCCCCcEEEEEeCC-----CeEEEEeCCCCeeEEeecC----CeeEEEEecCCCEEEEEE
Q 047260          582 NFCSQA-YTGHSSPIMSLDFHPKKTDLFCFCDND-----NEIQYWSINPFLCTHITKG----GTAQVRFQPRIGQLLAAA  651 (784)
Q Consensus       582 ~~~~~~-~~~h~~~V~sl~~sp~~~~ll~sgs~d-----g~I~iwDl~~~~~~~~~~~----~v~~v~fsp~~~~Ll~~s  651 (784)
                      ...... +........++.+   +..+++.|+.+     ..+.+||+.+..-......    ....++.. ++..++.|+
T Consensus       148 ~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG  223 (308)
T 1zgk_A          148 EWHLVAPMLTRRIGVGVAVL---NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGG  223 (308)
T ss_dssp             EEEECCCCSSCCBSCEEEEE---TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECC
T ss_pred             eEeECCCCCccccceEEEEE---CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEEEEEeC
Confidence            532211 1111111222222   34467776654     4688999887554433221    11122222 455556665


Q ss_pred             CC-----CcEEEEECCCCeEEEE--EeCCCCCEEEEEEcCCCCEEEEEe-C-----CeEEEEeCCCCc
Q 047260          652 SD-----KVVSIFDIETDRQTHS--LQGHAELVNYICWDTNGDYLASVS-Q-----NLVKVWSMASGE  706 (784)
Q Consensus       652 ~D-----g~I~IwDl~t~~~i~~--l~~h~~~V~sl~~spdg~~Lasgs-d-----d~I~IwDl~t~~  706 (784)
                      .+     ..+.+||+.+.+-...  +.........+.+  ++++++.|+ +     +.|.+||+.+.+
T Consensus       224 ~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~  289 (308)
T 1zgk_A          224 YDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDT  289 (308)
T ss_dssp             BCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             CCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence            53     5699999987643321  1111111222222  566666654 1     268888887764

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=95.72  E-value=2.9  Score=45.06  Aligned_cols=258  Identities=9%  Similarity=-0.034  Sum_probs=121.7

Q ss_pred             EEEEEeCCCeEEEEECCC-Cceeeec--CCCCCCeEEEEEcc-CCCEEEEEeCCC----eEEEEcCCCCcceeee-----
Q 047260          521 LLASSGHDRKVVLWNMDT-LQTESTP--EDHKSVVTDVRFRP-NSSQLATASVDK----SVRLWDAANPNFCSQA-----  587 (784)
Q Consensus       521 ~Lasgs~Dg~I~IWd~~t-~~~~~~l--~~h~~~It~i~fsp-dg~~Latgs~Dg----~I~IWdl~~~~~~~~~-----  587 (784)
                      .|.+|+..| +.+++... +.....+  ......|.+|++.| +...|+++...|    .|...+ +.+......     
T Consensus        24 ~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~  101 (394)
T 3b7f_A           24 MLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPA  101 (394)
T ss_dssp             EEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCC
T ss_pred             EEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCcccc
Confidence            566777777 55555432 2211111  12345799999998 334455555554    343332 112211111     


Q ss_pred             ccC--------CCCCeEEEEEcCCC-CcEEEEEeCCCeEEEEeCCC--CeeEEee-------------------cCCeeE
Q 047260          588 YTG--------HSSPIMSLDFHPKK-TDLFCFCDNDNEIQYWSINP--FLCTHIT-------------------KGGTAQ  637 (784)
Q Consensus       588 ~~~--------h~~~V~sl~~sp~~-~~ll~sgs~dg~I~iwDl~~--~~~~~~~-------------------~~~v~~  637 (784)
                      +..        ....|.+|++.|.. ...+.++...+.|...+-..  .+.+...                   ...+.+
T Consensus       102 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~  181 (394)
T 3b7f_A          102 FNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHS  181 (394)
T ss_dssp             CCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEE
T ss_pred             CCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeE
Confidence            111        11257789998742 22344444456565554322  1222110                   124567


Q ss_pred             EEEecC-CCEEEEEECCCcEEEEECCCCeEEEEEeC-----C--------CCCEEEEEEcCC-CCEEEEEeCCeEEEEeC
Q 047260          638 VRFQPR-IGQLLAAASDKVVSIFDIETDRQTHSLQG-----H--------AELVNYICWDTN-GDYLASVSQNLVKVWSM  702 (784)
Q Consensus       638 v~fsp~-~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~-----h--------~~~V~sl~~spd-g~~Lasgsdd~I~IwDl  702 (784)
                      |.++|. ...++++..++.|...+- .++....+..     +        ...+.+|.++|+ ...|+++..+.|...+-
T Consensus       182 i~~d~~~~~~l~vg~~~ggl~~s~D-gG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~~s~D  260 (394)
T 3b7f_A          182 ILVDPRDPKHLYIGMSSGGVFESTD-AGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIYRMDR  260 (394)
T ss_dssp             EEECTTCTTCEEEEEETBEEEEESS-TTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEEEEET
T ss_pred             EEECCCCCCEEEEEECCCCEEEECC-CCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEEEeCC
Confidence            888874 456666665554544432 2222222211     0        124889999985 35666666666555542


Q ss_pred             CCCceEEEecc--CC---CceEEEEEecC-CCEEEEEEC-----------CCeEEEEECCC-CceE-Eec-ccC--C---
Q 047260          703 ASGECIQELSS--NG---NQFHSCVFHPS-YSTLLVVGG-----------ISSLELWNMAE-NKSM-TIA-AHE--N---  757 (784)
Q Consensus       703 ~t~~~i~~l~~--~~---~~I~sl~fspd-g~~L~s~s~-----------dg~I~Iwdl~~-~~~~-~~~-~h~--~---  757 (784)
                       .++.-..+..  ..   ..+.+++++|. ...|+++..           ++...||...+ ++.. .+. .-.  .   
T Consensus       261 -~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~  339 (394)
T 3b7f_A          261 -REGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWL  339 (394)
T ss_dssp             -TTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCC
T ss_pred             -CCCcceECCCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccc
Confidence             2332222221  11   23567788763 344555542           23344554443 2322 111 101  0   


Q ss_pred             --ceEEEEEeCCC-CEEEEEECCCcEEE
Q 047260          758 --IISALAQSPVT-GMVASASHDSSVKL  782 (784)
Q Consensus       758 --~V~slafspdg-~~LaSgs~DG~V~I  782 (784)
                        ...+++++|.. ..|+.++.++.|.+
T Consensus       340 ~~~~~~~~~~p~~~~~l~~g~~~g~l~~  367 (394)
T 3b7f_A          340 TVKRQAMTADAHAPVGVYFGTTGGEIWA  367 (394)
T ss_dssp             CCCTBSEEECCSSSCCEEEECTTSCEEE
T ss_pred             eEEEEEEEECCCCCCEEEEEeCCCeEEE
Confidence              12357787743 44666665665543

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=95.66  E-value=1.3  Score=50.07  Aligned_cols=252  Identities=13%  Similarity=0.106  Sum_probs=138.3

Q ss_pred             EEEEeCCCeEEEEECCCCceeeecCCC-------------------------CCCeE--EEEEcc---CCCEEEEEeC-C
Q 047260          522 LASSGHDRKVVLWNMDTLQTESTPEDH-------------------------KSVVT--DVRFRP---NSSQLATASV-D  570 (784)
Q Consensus       522 Lasgs~Dg~I~IWd~~t~~~~~~l~~h-------------------------~~~It--~i~fsp---dg~~Latgs~-D  570 (784)
                      |.+|+..|.|+|+-+.+++.+..+...                         .+...  .+++..   ||++|+.-.. +
T Consensus        73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan  152 (638)
T 3sbq_A           73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN  152 (638)
T ss_dssp             EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence            677888999999998888777665310                         01111  233332   6778877664 5


Q ss_pred             CeEEEEcCCCCcceeeeccCCCCCeEEEEEc--CCCCcEEEEEe------CCCeEE---------E---EeCCCCeeEEe
Q 047260          571 KSVRLWDAANPNFCSQAYTGHSSPIMSLDFH--PKKTDLFCFCD------NDNEIQ---------Y---WSINPFLCTHI  630 (784)
Q Consensus       571 g~I~IWdl~~~~~~~~~~~~h~~~V~sl~~s--p~~~~ll~sgs------~dg~I~---------i---wDl~~~~~~~~  630 (784)
                      ..|...+++.-+....+-......+..+.|-  |+..++|+.+-      .||...         +   .|..+.+....
T Consensus       153 ~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~Q  232 (638)
T 3sbq_A          153 SRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAFQ  232 (638)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEEE
T ss_pred             cceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEEE
Confidence            5677777776553222223455677888886  56665555442      233211         1   12222111110


Q ss_pred             --ecCCeeEEEEecCCCEEEEEECCC---------------cEEEEECCC-------C--e-----EEEEEeC-------
Q 047260          631 --TKGGTAQVRFQPRIGQLLAAASDK---------------VVSIFDIET-------D--R-----QTHSLQG-------  672 (784)
Q Consensus       631 --~~~~v~~v~fsp~~~~Ll~~s~Dg---------------~I~IwDl~t-------~--~-----~i~~l~~-------  672 (784)
                        ..+....+...+++++.++.+.+.               .|.++++..       +  +     -+..+.+       
T Consensus       233 v~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~~~  312 (638)
T 3sbq_A          233 VIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDGKD  312 (638)
T ss_dssp             EEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTTBC
T ss_pred             EEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEccccccccC
Confidence              112223344556666766665421               244444320       0  0     1112221       


Q ss_pred             --------CCCCEEEEEEcCCCCEEEEEeC--CeEEEEeCCCC------c------e-EEEeccCCCceEEEEEecCCCE
Q 047260          673 --------HAELVNYICWDTNGDYLASVSQ--NLVKVWSMASG------E------C-IQELSSNGNQFHSCVFHPSYST  729 (784)
Q Consensus       673 --------h~~~V~sl~~spdg~~Lasgsd--d~I~IwDl~t~------~------~-i~~l~~~~~~I~sl~fspdg~~  729 (784)
                              -......+.++|||+++++++.  .+|.|+|++.-      +      + +.+.. -+-.....+|.++|..
T Consensus       313 ~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~a  391 (638)
T 3sbq_A          313 SKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRGNA  391 (638)
T ss_dssp             CSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSSEE
T ss_pred             CceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCCce
Confidence                    1122345778999999999884  49999998741      1      1 22332 3445678899999955


Q ss_pred             EEEEECCCeEEEEECCCC----------ceE-EecccCCceEEEEE------eCCCCEEEEEE
Q 047260          730 LLVVGGISSLELWNMAEN----------KSM-TIAAHENIISALAQ------SPVTGMVASAS  775 (784)
Q Consensus       730 L~s~s~dg~I~Iwdl~~~----------~~~-~~~~h~~~V~slaf------spdg~~LaSgs  775 (784)
                      ..+.--|..|.-|++...          ..+ .+..|-. +-.+.-      .+||++|++.+
T Consensus       392 YTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~Yq-pGH~~~~~get~~~dGk~lv~ln  453 (638)
T 3sbq_A          392 YTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQ-PGHLHASLCETNEADGKWLVALS  453 (638)
T ss_dssp             EEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSC-EEEEEETTTTSTTCCSCEEEEEE
T ss_pred             EeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccC-CcccccCCCccCCCCccEEEEec
Confidence            555557899999998653          222 3333333 222322      46888888875

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=95.57  E-value=0.22  Score=53.32  Aligned_cols=188  Identities=6%  Similarity=-0.080  Sum_probs=104.7

Q ss_pred             CEEEEEeCCCeEEEEECCCCceeeecCCC-CCCeEEEEEc--cCCCEEEEE--eCCCeEEEEcCCCCcceeeecc---CC
Q 047260          520 KLLASSGHDRKVVLWNMDTLQTESTPEDH-KSVVTDVRFR--PNSSQLATA--SVDKSVRLWDAANPNFCSQAYT---GH  591 (784)
Q Consensus       520 ~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h-~~~It~i~fs--pdg~~Latg--s~Dg~I~IWdl~~~~~~~~~~~---~h  591 (784)
                      .++++++.||.|.-+|.++|+....+... ..++....-.  +.+..++.+  +.||.|..++..++......-.   -.
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            47888999999999999999999888643 1222221100  112234433  5799999999877642211100   01


Q ss_pred             CCCeEE---EEE-cC---CCCcEEEEEeCCCeEEEEeCCCCeeEEeecCCee----------EEEEe-----cCCCEEEE
Q 047260          592 SSPIMS---LDF-HP---KKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTA----------QVRFQ-----PRIGQLLA  649 (784)
Q Consensus       592 ~~~V~s---l~~-sp---~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v~----------~v~fs-----p~~~~Ll~  649 (784)
                      ..++..   ..+ .+   .....+++++.+|.+...|+++++.+..+.....          |....     ..+..++.
T Consensus        91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i  170 (339)
T 2be1_A           91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI  170 (339)
T ss_dssp             TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred             ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence            222221   000 00   0234778899999999999999998888763311          11111     12356777


Q ss_pred             EECCCcEEEEECCCCeEEEEE-----eCCCCC--E-EEEEEcCCCCEEEEEeCCeEEEEeCCCCceEE
Q 047260          650 AASDKVVSIFDIETDRQTHSL-----QGHAEL--V-NYICWDTNGDYLASVSQNLVKVWSMASGECIQ  709 (784)
Q Consensus       650 ~s~Dg~I~IwDl~t~~~i~~l-----~~h~~~--V-~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~  709 (784)
                      +..+..|.+.+ ++++ +..+     ......  + ..-..+.|+.++++..++.|..+|..+|+.+.
T Consensus       171 g~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~~~~~~dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          171 GKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMCIAPFRDKSLLASDLDFRIARW  236 (339)
T ss_dssp             EEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCCEEEETTTEEEEECSTTCCEEE
T ss_pred             ecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcEEEECCCCEEEEEECCCCcEEE
Confidence            77777777776 4443 2111     111000  0 00001234677666667799999988888765

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.51  E-value=1.4  Score=43.91  Aligned_cols=171  Identities=12%  Similarity=-0.004  Sum_probs=96.5

Q ss_pred             CCEEEEEeCCCeEEEEcCCCCcc--e--eeeccCC--CCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCC-------Cee
Q 047260          561 SSQLATASVDKSVRLWDAANPNF--C--SQAYTGH--SSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINP-------FLC  627 (784)
Q Consensus       561 g~~Latgs~Dg~I~IWdl~~~~~--~--~~~~~~h--~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~-------~~~  627 (784)
                      ...|++...| +|++=.......  .  .....+.  =..+.+++|+|++. +.++  .+|.++-.+..+       ...
T Consensus         4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~-LYaV--~~G~Ly~~~~~t~~~~~W~~s~   79 (236)
T 1tl2_A            4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGE-LYGV--LNDKIYKGTPPTHDNDNWMGRA   79 (236)
T ss_dssp             CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSC-EEEE--ETTEEEEESCCCSTTCCHHHHC
T ss_pred             ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCcc-EEEE--eCCeEEEECCCCCCcccccccc
Confidence            4567777777 666655544331  0  1111122  24678999999776 5555  678877777644       111


Q ss_pred             EEeec---CCeeEEEEecCCCEEEEEECCCcEEEEECCCCeE-------EEEEeCCCCCEEEEEEcCCCCEEEEEeCCeE
Q 047260          628 THITK---GGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQ-------THSLQGHAELVNYICWDTNGDYLASVSQNLV  697 (784)
Q Consensus       628 ~~~~~---~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~-------i~~l~~h~~~V~sl~~spdg~~Lasgsdd~I  697 (784)
                      .++-.   .....+.|.|++...++  .||.|+-++..+...       ...-...-..+..|.+.|+|.+.++. ++.+
T Consensus        80 t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~l  156 (236)
T 1tl2_A           80 KKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQF  156 (236)
T ss_dssp             EEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTEE
T ss_pred             cEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCcE
Confidence            11111   12467889999877766  669988887643211       11111122467999999999999888 7775


Q ss_pred             EEEeCCCCc------eEEEec-cCCCceEEEEEecCCCEEEEEECCCeEE
Q 047260          698 KVWSMASGE------CIQELS-SNGNQFHSCVFHPSYSTLLVVGGISSLE  740 (784)
Q Consensus       698 ~IwDl~t~~------~i~~l~-~~~~~I~sl~fspdg~~L~s~s~dg~I~  740 (784)
                      +-+...++.      ....+- ..-.....+.|.+++...++.  ++.|+
T Consensus       157 yr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~Y  204 (236)
T 1tl2_A          157 YKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKFY  204 (236)
T ss_dssp             EEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred             EecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeEE
Confidence            433333221      111221 222344556688888655544  66443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=95.48  E-value=0.0014  Score=78.01  Aligned_cols=7  Identities=14%  Similarity=0.373  Sum_probs=2.8

Q ss_pred             CCeEEEE
Q 047260          614 DNEIQYW  620 (784)
Q Consensus       614 dg~I~iw  620 (784)
                      +|...+|
T Consensus       487 ~G~AI~y  493 (727)
T 4b8c_D          487 DGCCIFF  493 (727)
T ss_dssp             CCCEEEC
T ss_pred             ccEEEEE
Confidence            3334443

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.30  E-value=0.41  Score=47.82  Aligned_cols=141  Identities=13%  Similarity=0.050  Sum_probs=84.0

Q ss_pred             CCeeEEEEecCCCEEEEEECCCcEEEEECCCCeE------EEEEeC-CCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCC
Q 047260          633 GGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQ------THSLQG-HAELVNYICWDTNGDYLASVSQNLVKVWSMASG  705 (784)
Q Consensus       633 ~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~------i~~l~~-h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~  705 (784)
                      ..+..++|+|++. |+++ .+|.++-.+..+...      -..+-. --....++.|+|+|.+.++ +++.|+-++-.+.
T Consensus        41 ~~~~~laf~P~G~-LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav-~dG~iyr~~pP~~  117 (236)
T 1tl2_A           41 SNFKFLFLSPGGE-LYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV-SKDKLYKASPPQS  117 (236)
T ss_dssp             TTCSEEEECTTSC-EEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE-ETTEEEEESCCCS
T ss_pred             ccceeEEECCCcc-EEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe-CCCEEEEeCCCcC
Confidence            4677999999776 4444 778887777655211      111110 1112478899999999888 7888877776432


Q ss_pred             ce-------EEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE-------Eec-ccCCceEEEEEeCCCCE
Q 047260          706 EC-------IQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM-------TIA-AHENIISALAQSPVTGM  770 (784)
Q Consensus       706 ~~-------i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~-------~~~-~h~~~V~slafspdg~~  770 (784)
                      ..       ...-...-..+..+.+.|+|... ++. |+.++-+........       .+. ......+.+.|++++.+
T Consensus       118 ~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Ly-av~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l  195 (236)
T 1tl2_A          118 DTDNWIARATEVGSGGWSGFKFLFFHPNGYLY-AVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTL  195 (236)
T ss_dssp             TTCCHHHHSEEEECSSGGGEEEEEECTTSCEE-EEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCE
T ss_pred             CCCceeccccEeccCCCCceEEEEECCCceEE-EEe-CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcE
Confidence            11       11111222567999999999754 444 777654433322211       111 33334556779999877


Q ss_pred             EEEEECCCcE
Q 047260          771 VASASHDSSV  780 (784)
Q Consensus       771 LaSgs~DG~V  780 (784)
                      .++.  +|.+
T Consensus       196 ~~v~--~g~~  203 (236)
T 1tl2_A          196 FGVQ--GGKF  203 (236)
T ss_dssp             EEEE--TTEE
T ss_pred             EEEe--CCeE
Confidence            7766  7654

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=95.28  E-value=0.81  Score=50.14  Aligned_cols=142  Identities=14%  Similarity=0.064  Sum_probs=94.7

Q ss_pred             cCCCCEEEEEeCCCeEEEEECCCCceeeecCCC----CCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcc--------
Q 047260          516 SSDGKLLASSGHDRKVVLWNMDTLQTESTPEDH----KSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNF--------  583 (784)
Q Consensus       516 spdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h----~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~--------  583 (784)
                      +.+|..|+++- ++.||.-++......+.+..-    -..|..+..+|+|++||..+. ..|.|-.+..+..        
T Consensus        29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~  106 (452)
T 3pbp_A           29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQ  106 (452)
T ss_dssp             ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHH
T ss_pred             EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccc
Confidence            44666666554 577888888754444444322    236888999999999998864 5788888763220        


Q ss_pred             ---eeeecc-C-----CCCCeEEEEEcCCCCc--EEEEEeCCCeEEEEeCCCCe--eE------Eeec-----CCeeEEE
Q 047260          584 ---CSQAYT-G-----HSSPIMSLDFHPKKTD--LFCFCDNDNEIQYWSINPFL--CT------HITK-----GGTAQVR  639 (784)
Q Consensus       584 ---~~~~~~-~-----h~~~V~sl~~sp~~~~--ll~sgs~dg~I~iwDl~~~~--~~------~~~~-----~~v~~v~  639 (784)
                         ..+.+. +     ...+|..+.|||-+..  .+++-..|+.|++||+....  ..      ..+.     ..+.+++
T Consensus       107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~  186 (452)
T 3pbp_A          107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLE  186 (452)
T ss_dssp             HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEE
T ss_pred             cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEE
Confidence               011111 1     3578999999997643  67777889999999997411  11      1111     4677889


Q ss_pred             EecCCCEEEEEE--CCCcEEEE
Q 047260          640 FQPRIGQLLAAA--SDKVVSIF  659 (784)
Q Consensus       640 fsp~~~~Ll~~s--~Dg~I~Iw  659 (784)
                      |..++-.|++..  .+|.|+-.
T Consensus       187 Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          187 FSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             ECTTSSCEEEEECTTSCEEEEE
T ss_pred             EcCCCcEEEEEecCCCCCEEEE
Confidence            999877788866  67888765

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=95.15  E-value=0.94  Score=47.99  Aligned_cols=188  Identities=10%  Similarity=0.016  Sum_probs=91.3

Q ss_pred             CCCEEEEEeC-C---------CeEEEEECCCCceeeec--C-CCCCCeEEEEEccCCCEEEEEeCC--------------
Q 047260          518 DGKLLASSGH-D---------RKVVLWNMDTLQTESTP--E-DHKSVVTDVRFRPNSSQLATASVD--------------  570 (784)
Q Consensus       518 dg~~Lasgs~-D---------g~I~IWd~~t~~~~~~l--~-~h~~~It~i~fspdg~~Latgs~D--------------  570 (784)
                      ++++++.|+. +         ..+.+||..+.+-....  . .......++.  .++++++.|+.+              
T Consensus        65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~  142 (357)
T 2uvk_A           65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEA  142 (357)
T ss_dssp             TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE--ECCEEEEEeCcCCCcCcccccchhhc
Confidence            5667777765 2         46899999875433222  1 1111222233  467788888765              


Q ss_pred             -------------------------CeEEEEcCCCCcceeeeccCCCCCe-EEEEEcCCCCcEEEEEeC------CCeEE
Q 047260          571 -------------------------KSVRLWDAANPNFCSQAYTGHSSPI-MSLDFHPKKTDLFCFCDN------DNEIQ  618 (784)
Q Consensus       571 -------------------------g~I~IWdl~~~~~~~~~~~~h~~~V-~sl~~sp~~~~ll~sgs~------dg~I~  618 (784)
                                               ..+.+||+.+.......-....... .+++..  +..+++.|+.      ...+.
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~  220 (357)
T 2uvk_A          143 GKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK--GDKTWLINGEAKPGLRTDAVF  220 (357)
T ss_dssp             TTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEE--TTEEEEECCEEETTEECCCEE
T ss_pred             CCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEE--CCEEEEEeeecCCCcccCceE
Confidence                                     5788999987653322111111111 223332  3346666653      34677


Q ss_pred             EEeC--CCCeeEEeec--C---CeeEEEEecCCCEEEEEECC----------------------CcEEEEECCCCe--EE
Q 047260          619 YWSI--NPFLCTHITK--G---GTAQVRFQPRIGQLLAAASD----------------------KVVSIFDIETDR--QT  667 (784)
Q Consensus       619 iwDl--~~~~~~~~~~--~---~v~~v~fsp~~~~Ll~~s~D----------------------g~I~IwDl~t~~--~i  667 (784)
                      +||+  .+..-.....  .   .....+...++..++.|+.+                      ..+.+||+.+.+  .+
T Consensus       221 ~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~  300 (357)
T 2uvk_A          221 ELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKS  300 (357)
T ss_dssp             EEECC---CEEEECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEE
T ss_pred             EEEecCCCCcEEecCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeC
Confidence            7887  3333222211  1   11111233344555666532                      257889988653  33


Q ss_pred             EEEeCCCCCEEEEEEcCCCCEEEEEe-CC------eEEEEeCCCCceEEEe
Q 047260          668 HSLQGHAELVNYICWDTNGDYLASVS-QN------LVKVWSMASGECIQEL  711 (784)
Q Consensus       668 ~~l~~h~~~V~sl~~spdg~~Lasgs-dd------~I~IwDl~t~~~i~~l  711 (784)
                      ..+........++.  -++++++.|+ +.      .|.++++++++.+...
T Consensus       301 ~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~  349 (357)
T 2uvk_A          301 GELSQGRAYGVSLP--WNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQN  349 (357)
T ss_dssp             EECSSCCBSSEEEE--ETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred             CCCCCCcccceeEE--eCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeee
Confidence            33332222222222  3566666665 21      4666788887766544

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=94.83  E-value=0.94  Score=53.32  Aligned_cols=192  Identities=5%  Similarity=-0.016  Sum_probs=100.6

Q ss_pred             cCCCEEEEEeCC----CeEEEEcCCCCcceeeecc------CCCCCeEEEEEcCCCCcEEEEEeCC------CeEEEEeC
Q 047260          559 PNSSQLATASVD----KSVRLWDAANPNFCSQAYT------GHSSPIMSLDFHPKKTDLFCFCDND------NEIQYWSI  622 (784)
Q Consensus       559 pdg~~Latgs~D----g~I~IWdl~~~~~~~~~~~------~h~~~V~sl~~sp~~~~ll~sgs~d------g~I~iwDl  622 (784)
                      .++.+++.|+.+    ..+.+||..+.........      .....-.+++..+.+..+++.|+.+      ..+.+||+
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            355666666643    3577888877653322201      1111112233332133466666643      35788998


Q ss_pred             CCCeeEEeecC----CeeEEEEecCCCEEEEEECCC--cEEEEECCCCeEEEEE-----eCCCCCEEEEEEcCC-CCEEE
Q 047260          623 NPFLCTHITKG----GTAQVRFQPRIGQLLAAASDK--VVSIFDIETDRQTHSL-----QGHAELVNYICWDTN-GDYLA  690 (784)
Q Consensus       623 ~~~~~~~~~~~----~v~~v~fsp~~~~Ll~~s~Dg--~I~IwDl~t~~~i~~l-----~~h~~~V~sl~~spd-g~~La  690 (784)
                      .+..-......    .-.+++...++..++.|+.++  .+.+||..+..-...-     ........++.+..+ +++++
T Consensus       476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv  555 (695)
T 2zwa_A          476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGII  555 (695)
T ss_dssp             TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred             CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEE
Confidence            87554433221    112233324667777777643  7999999887532211     111222233555554 66666


Q ss_pred             EEeC--------CeEEEEeCCCCce-----EEEecc---CCCceEEEEEecCCCEEEEEECC--------CeEEEEECCC
Q 047260          691 SVSQ--------NLVKVWSMASGEC-----IQELSS---NGNQFHSCVFHPSYSTLLVVGGI--------SSLELWNMAE  746 (784)
Q Consensus       691 sgsd--------d~I~IwDl~t~~~-----i~~l~~---~~~~I~sl~fspdg~~L~s~s~d--------g~I~Iwdl~~  746 (784)
                      .|+.        +.+.+||+.+...     -..+..   ....-.+++...++..++.|+.+        ..|.+||+.+
T Consensus       556 ~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t  635 (695)
T 2zwa_A          556 LGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLS  635 (695)
T ss_dssp             ECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTT
T ss_pred             ECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCC
Confidence            6652        2689999988761     112211   11122334444446666666642        4699999998


Q ss_pred             CceE
Q 047260          747 NKSM  750 (784)
Q Consensus       747 ~~~~  750 (784)
                      .+-.
T Consensus       636 ~~W~  639 (695)
T 2zwa_A          636 ETLT  639 (695)
T ss_dssp             TEEE
T ss_pred             CeEE
Confidence            7654

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=94.59  E-value=1.3  Score=52.03  Aligned_cols=189  Identities=11%  Similarity=0.092  Sum_probs=99.5

Q ss_pred             CCCCEEEEEeCC----CeEEEEECCCCceeeec-C-------CCCCCeEEEEEccCCCEEEEEeCCC------eEEEEcC
Q 047260          517 SDGKLLASSGHD----RKVVLWNMDTLQTESTP-E-------DHKSVVTDVRFRPNSSQLATASVDK------SVRLWDA  578 (784)
Q Consensus       517 pdg~~Lasgs~D----g~I~IWd~~t~~~~~~l-~-------~h~~~It~i~fspdg~~Latgs~Dg------~I~IWdl  578 (784)
                      .++.+++.||.+    ..+.+||..+.+-...- .       .....-..+.+..++.+++.|+.++      .+.+||.
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            456677777753    45889998766433322 1       1111222333322677778877543      5788898


Q ss_pred             CCCcceeee-ccCCCCCeEEEEEcCCCCcEEEEEeCCC--eEEEEeCCCCeeEEeec--------CCeeEEEEecC-CCE
Q 047260          579 ANPNFCSQA-YTGHSSPIMSLDFHPKKTDLFCFCDNDN--EIQYWSINPFLCTHITK--------GGTAQVRFQPR-IGQ  646 (784)
Q Consensus       579 ~~~~~~~~~-~~~h~~~V~sl~~sp~~~~ll~sgs~dg--~I~iwDl~~~~~~~~~~--------~~v~~v~fsp~-~~~  646 (784)
                      .+....... ....... .+++...++ .+++.|+.++  .+.+||+.+..-.....        .....+.+... +..
T Consensus       476 ~t~~W~~~~~~p~~R~~-h~~~~~~~~-~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~i  553 (695)
T 2zwa_A          476 KTREWSMIKSLSHTRFR-HSACSLPDG-NVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQG  553 (695)
T ss_dssp             TTTEEEECCCCSBCCBS-CEEEECTTS-CEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEE
T ss_pred             CCCcEEECCCCCCCccc-ceEEEEcCC-EEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEE
Confidence            875532211 1111111 122222244 4677776544  68999998765443321        12233555655 445


Q ss_pred             EEEEEC--C-----CcEEEEECCCCeE-----EEEEeC----CCCCEEEEEEcCCCCEEEEEe---------CCeEEEEe
Q 047260          647 LLAAAS--D-----KVVSIFDIETDRQ-----THSLQG----HAELVNYICWDTNGDYLASVS---------QNLVKVWS  701 (784)
Q Consensus       647 Ll~~s~--D-----g~I~IwDl~t~~~-----i~~l~~----h~~~V~sl~~spdg~~Lasgs---------dd~I~IwD  701 (784)
                      ++.|+.  +     +.+.+||+.+..-     ...+..    ...... ++...++++++.|+         .+.|.+||
T Consensus       554 yv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd  632 (695)
T 2zwa_A          554 IILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQ-IKYITPRKLLIVGGTSPSGLFDRTNSIISLD  632 (695)
T ss_dssp             EEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCE-EEEEETTEEEEECCBCSSCCCCTTTSEEEEE
T ss_pred             EEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccce-EEEeCCCEEEEECCccCCCCCCCCCeEEEEE
Confidence            555654  2     4588999988761     222211    111122 23333366666665         12699999


Q ss_pred             CCCCceE
Q 047260          702 MASGECI  708 (784)
Q Consensus       702 l~t~~~i  708 (784)
                      +.+.+-.
T Consensus       633 ~~t~~W~  639 (695)
T 2zwa_A          633 PLSETLT  639 (695)
T ss_dssp             TTTTEEE
T ss_pred             CCCCeEE
Confidence            9887544

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=94.26  E-value=8.3  Score=42.81  Aligned_cols=224  Identities=10%  Similarity=0.097  Sum_probs=112.8

Q ss_pred             CCeEEEEEccCCC-EEEEEeCCCeEEEEcCCCCc--ceeee----cc-----CCCCCeEEEEEcCC---CCcEEEEEeC-
Q 047260          550 SVVTDVRFRPNSS-QLATASVDKSVRLWDAANPN--FCSQA----YT-----GHSSPIMSLDFHPK---KTDLFCFCDN-  613 (784)
Q Consensus       550 ~~It~i~fspdg~-~Latgs~Dg~I~IWdl~~~~--~~~~~----~~-----~h~~~V~sl~~sp~---~~~ll~sgs~-  613 (784)
                      ..-+.|+|.|++. .|+++...|.|++++.....  ..+..    +.     ........|+|+|+   ...++++-+. 
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~   93 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN   93 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence            3457899999986 56666788999999754321  01111    11     11356789999996   3334444322 


Q ss_pred             -C----------CeEEEEeCCC----------CeeEEeec-----CCeeEEEEecCCCEEEEEECCC-------------
Q 047260          614 -D----------NEIQYWSINP----------FLCTHITK-----GGTAQVRFQPRIGQLLAAASDK-------------  654 (784)
Q Consensus       614 -d----------g~I~iwDl~~----------~~~~~~~~-----~~v~~v~fsp~~~~Ll~~s~Dg-------------  654 (784)
                       +          ..|.-|.+..          .+.+....     .....|.|.|++.++++.+..+             
T Consensus        94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~~  173 (463)
T 2wg3_C           94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGLS  173 (463)
T ss_dssp             CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTCC
T ss_pred             CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccCcC
Confidence             1          1344455431          12222211     2346799999997666665433             


Q ss_pred             ----cEEEEECCCC---------------------eEEEEEeCCCCCEEEEEEcCC-----CCE-EEEEeC-C----eEE
Q 047260          655 ----VVSIFDIETD---------------------RQTHSLQGHAELVNYICWDTN-----GDY-LASVSQ-N----LVK  698 (784)
Q Consensus       655 ----~I~IwDl~t~---------------------~~i~~l~~h~~~V~sl~~spd-----g~~-Lasgsd-d----~I~  698 (784)
                          .|.-+|....                     ..+. -.+|.. ...++|+|.     |++ ++.+.. +    .-.
T Consensus       174 ~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~-a~G~RN-p~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~e  251 (463)
T 2wg3_C          174 DFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVF-AHGLHD-PGRCAVDRHPTDININLTILCSDSNGKNRSSAR  251 (463)
T ss_dssp             SCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEE-EECCSS-CCBEEEESSCSSTTCSEEEEEECC------CEE
T ss_pred             CCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEE-EECCCC-cceEEECCCCCCcccceEEEecccCCCCCCCCe
Confidence                2333333321                     0011 112222 245789986     443 443321 1    123


Q ss_pred             EEeCCCC------ceEEEeccCC-CceEEEEEecCCC------EEEEEECCCeEEEEECCCCce----EEec--------
Q 047260          699 VWSMASG------ECIQELSSNG-NQFHSCVFHPSYS------TLLVVGGISSLELWNMAENKS----MTIA--------  753 (784)
Q Consensus       699 IwDl~t~------~~i~~l~~~~-~~I~sl~fspdg~------~L~s~s~dg~I~Iwdl~~~~~----~~~~--------  753 (784)
                      |..+..+      .++..+..+. ..+..+.|-....      .++++...+.|....++....    ..+.        
T Consensus       252 i~~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~~~~g~i~~~~~~~~~~~~~~~~~~~g~~~~~~  331 (463)
T 2wg3_C          252 ILQIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVFGDRNGNFLTLQQSPVTKQWQEKPLCLGTSGSCR  331 (463)
T ss_dssp             EEEEC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEEEETTSCEEEEEC-----CCEEEEECEEETTSSC
T ss_pred             EeeeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEEecCCCcEEEEEeCCCCceeeEEEeecCCccccc
Confidence            3333322      2444554331 4567777743221      245555557776666654321    1221        


Q ss_pred             -ccCCceEEEEEeCCCCEEEEEE
Q 047260          754 -AHENIISALAQSPVTGMVASAS  775 (784)
Q Consensus       754 -~h~~~V~slafspdg~~LaSgs  775 (784)
                       .....+..+.+.|||.++++..
T Consensus       332 ~~~~~r~~~v~~~pdG~Lyv~~~  354 (463)
T 2wg3_C          332 GYFSGHILGFGEDELGEVYILSS  354 (463)
T ss_dssp             SCCCSEEEEEEECTTCCEEEEEE
T ss_pred             ccccCcceEEEECCCCCEEEEec
Confidence             1235799999999999888765

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=93.96  E-value=3.3  Score=46.78  Aligned_cols=181  Identities=15%  Similarity=0.155  Sum_probs=108.5

Q ss_pred             CCCcEEEEEeCCCeEEEEeCCCCeeEEeec----CCeeEEEEe--cCCCEEEEEEC-------CCcEE------------
Q 047260          603 KKTDLFCFCDNDNEIQYWSINPFLCTHITK----GGTAQVRFQ--PRIGQLLAAAS-------DKVVS------------  657 (784)
Q Consensus       603 ~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~----~~v~~v~fs--p~~~~Ll~~s~-------Dg~I~------------  657 (784)
                      ||+++|+-.-.+..|...+++..++..+.+    ..+..++|.  |+..++++++.       ||...            
T Consensus       141 DGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~  220 (638)
T 3sbq_A          141 DGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYN  220 (638)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEE
T ss_pred             eeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEE
Confidence            466666666678889999999988877765    456677775  78888888875       33321            


Q ss_pred             EEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeC----------------CeEEEEeCCC-------Cc-------e
Q 047260          658 IFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQ----------------NLVKVWSMAS-------GE-------C  707 (784)
Q Consensus       658 IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsd----------------d~I~IwDl~t-------~~-------~  707 (784)
                      ..|..+.+....+.- .+....+..+++|.+.++.+.                |.|.++++..       |+       -
T Consensus       221 ~iD~~tm~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~g  299 (638)
T 3sbq_A          221 AIDAETMEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSK  299 (638)
T ss_dssp             EEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCC
T ss_pred             EEcCCccEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCC
Confidence            122222222222111 112223445677777776541                2566766521       10       1


Q ss_pred             EEEeccC---------------CCceEEEEEecCCCEEEEEEC-CCeEEEEECCCC------ce-------EEecccCCc
Q 047260          708 IQELSSN---------------GNQFHSCVFHPSYSTLLVVGG-ISSLELWNMAEN------KS-------MTIAAHENI  758 (784)
Q Consensus       708 i~~l~~~---------------~~~I~sl~fspdg~~L~s~s~-dg~I~Iwdl~~~------~~-------~~~~~h~~~  758 (784)
                      +..+.+.               ......|.++|||+++++++. +.++.++|+..-      +.       .....-.-.
T Consensus       300 v~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlG  379 (638)
T 3sbq_A          300 TPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLG  379 (638)
T ss_dssp             CCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSC
T ss_pred             eeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCc
Confidence            1122211               123467889999999888876 568999998741      11       111123345


Q ss_pred             eEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          759 ISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       759 V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      ....+|.++|....|.--|..|..|+
T Consensus       380 PlHt~Fd~~G~aYTtlfidSqvvkWn  405 (638)
T 3sbq_A          380 PLHTTFDGRGNAYTTLFIDSQVVKWN  405 (638)
T ss_dssp             EEEEEECSSSEEEEEETTTTEEEEEE
T ss_pred             ccEEEECCCCceEeeeeecceEEEEe
Confidence            67889999995555555788999885

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=93.80  E-value=3.3  Score=42.74  Aligned_cols=238  Identities=14%  Similarity=0.054  Sum_probs=120.3

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeec
Q 047260          509 KVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAY  588 (784)
Q Consensus       509 ~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~  588 (784)
                      .|..++.... ..++. . ||.|+.|-....-.+.........|..|+...+. .++. . ||.|..|-......+-.. 
T Consensus        25 ~i~~ia~G~~-h~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~P-   97 (282)
T 3qhy_B           25 GVDAIAGGYF-HGLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTVP-   97 (282)
T ss_dssp             SCCEEEECSS-EEEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCCC-
T ss_pred             CCcEEEeCCC-eEEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCCC-
Confidence            3555554432 22333 4 8888888765422211111123367777765433 3333 4 899999976543221111 


Q ss_pred             cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeE---EeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCe
Q 047260          589 TGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCT---HITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDR  665 (784)
Q Consensus       589 ~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~---~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~  665 (784)
                      ..-...|..|+....   ..+.-. +|.|+.|-.+..-.+   ......+..++...  .+.++.. ||.|+.|-.....
T Consensus        98 ~~~~~~v~~ia~G~~---hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~--~~~~~l~-~G~v~~wG~n~~g  170 (282)
T 3qhy_B           98 AEARSGVDAIAAGAW---ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGV--YTALAVK-NGGVIAWGDNYFG  170 (282)
T ss_dssp             GGGSSSEEEEEEETT---EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECS--SEEEEEE-TTEEEEEECCTTS
T ss_pred             cccCCCeEEEECcCC---EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEccc--CEEEEEE-CCEEEEecCCCCC
Confidence            111246777776543   233334 999999977642111   11123444444433  3333334 7888888765421


Q ss_pred             EEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECC
Q 047260          666 QTHSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMA  745 (784)
Q Consensus       666 ~i~~l~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~  745 (784)
                      .+..-......|..|+...+.. ++. .++.|+.|-....-.+..-......|..++....  +.++.. ||.|+.|-..
T Consensus       171 qlg~p~~~~~~v~~i~~G~~hs-~al-~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~--h~~al~-~g~v~~wG~n  245 (282)
T 3qhy_B          171 QTTVPAEAQSGVDDVAGGIFHS-LAL-KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEW--YSLALK-NGKVIAWGSS  245 (282)
T ss_dssp             TTSCCGGGGSSEEEEEECSSEE-EEE-ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSS--CEEEEE-TTEEEEESTT
T ss_pred             CCCCceecCCCeEEEEecCCEE-EEE-ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCC--EEEEEE-CCEEEEecCC
Confidence            1110011134577776654433 333 6779999976542111100111234566655443  334444 9999999766


Q ss_pred             CCceEEecccCCceEEEEEeCCC
Q 047260          746 ENKSMTIAAHENIISALAQSPVT  768 (784)
Q Consensus       746 ~~~~~~~~~h~~~V~slafspdg  768 (784)
                      ....+.+   ...|..|+.....
T Consensus       246 ~~gq~~v---~~~v~~iaaG~~h  265 (282)
T 3qhy_B          246 RTAPSSV---QSGVSSIEAGPNA  265 (282)
T ss_dssp             CCCCGGG---SSCEEEEEECSSC
T ss_pred             CCccccC---CCCcEEEEECcCe
Confidence            5443322   3457777766543

>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A

Probab=93.34  E-value=0.016  Score=64.50  Aligned_cols=11  Identities=0%  Similarity=0.139  Sum_probs=5.1

Q ss_pred             cCchhHHHHhh
Q 047260          284 ASQQPQQVLAQ  294 (784)
Q Consensus       284 ~~~~~~~~~~~  294 (784)
                      +++.-|..+..
T Consensus       285 ~s~e~~~~~~~  295 (449)
T 3iot_A          285 LTDEGLEAVNK  295 (449)
T ss_dssp             SSHHHHHHHHH
T ss_pred             cCHHHHHHHHh
Confidence            34555544433

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=93.05  E-value=3.5  Score=42.56  Aligned_cols=215  Identities=15%  Similarity=0.050  Sum_probs=111.2

Q ss_pred             CCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeE-
Q 047260          550 SVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCT-  628 (784)
Q Consensus       550 ~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~-  628 (784)
                      ..|..|+.-... .++. . ||.|..|-......+-... .....|..|+....  +.++. . ||.|+.|-.+..-.+ 
T Consensus        24 ~~i~~ia~G~~h-~~~l-~-~G~v~~wG~n~~Gqlg~p~-~~~~~i~~ia~G~~--hs~~l-~-~G~v~~wG~n~~Gqlg   95 (282)
T 3qhy_B           24 SGVDAIAGGYFH-GLAL-K-GGKVLGWGANLNGQLTMPA-ATQSGVDAIAAGNY--HSLAL-K-DGEVIAWGGNEDGQTT   95 (282)
T ss_dssp             SSCCEEEECSSE-EEEE-E-TTEEEEEECCSSSTTSCCG-GGGSCCCEEEECSS--EEEEE-E-TTEEEEEECCTTSTTC
T ss_pred             CCCcEEEeCCCe-EEEE-E-CCEEEEEeCCCCCCCCCCc-cCCCCEEEEEeCCC--EEEEE-E-CCEEEEeeCCCCCCCC
Confidence            357777765432 2333 4 8999999765433211111 11235777776543  23444 4 899999987642111 


Q ss_pred             --EeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCc
Q 047260          629 --HITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGE  706 (784)
Q Consensus       629 --~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~  706 (784)
                        ......+..++...  .+.++.. ||.|+.|-......+-.-......|..|+...+..+++  .++.|+.|-....-
T Consensus        96 ~P~~~~~~v~~ia~G~--~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~l--~~G~v~~wG~n~~g  170 (282)
T 3qhy_B           96 VPAEARSGVDAIAAGA--WASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAV--KNGGVIAWGDNYFG  170 (282)
T ss_dssp             CCGGGSSSEEEEEEET--TEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEE--ETTEEEEEECCTTS
T ss_pred             CCcccCCCeEEEECcC--CEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEEE--ECCEEEEecCCCCC
Confidence              11123555555544  3455555 89999997654211111111234566666544333332  36788888765421


Q ss_pred             eEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceEEe-cccCCceEEEEEeCCCCEEEEEECCCcEEEe
Q 047260          707 CIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTI-AAHENIISALAQSPVTGMVASASHDSSVKLW  783 (784)
Q Consensus       707 ~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~-~~h~~~V~slafspdg~~LaSgs~DG~V~IW  783 (784)
                      .+..-......|..++....  +.++. .+|.|+.|-......+-+ ......|..|+..... .++..  ||.|..|
T Consensus       171 qlg~p~~~~~~v~~i~~G~~--hs~al-~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h-~~al~--~g~v~~w  242 (282)
T 3qhy_B          171 QTTVPAEAQSGVDDVAGGIF--HSLAL-KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWY-SLALK--NGKVIAW  242 (282)
T ss_dssp             TTSCCGGGGSSEEEEEECSS--EEEEE-ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSC-EEEEE--TTEEEEE
T ss_pred             CCCCceecCCCeEEEEecCC--EEEEE-ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCE-EEEEE--CCEEEEe
Confidence            11110111234565555443  33334 589999997655332211 1223457777655433 33333  8888888

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=92.90  E-value=14  Score=41.02  Aligned_cols=227  Identities=9%  Similarity=-0.010  Sum_probs=111.6

Q ss_pred             CceEEEEEcCCCC-EEEEEeCCCeEEEEECCCCc---eeeecC---------CCCCCeEEEEEccC----CCEEEEEeC-
Q 047260          508 SKVTCCHFSSDGK-LLASSGHDRKVVLWNMDTLQ---TESTPE---------DHKSVVTDVRFRPN----SSQLATASV-  569 (784)
Q Consensus       508 ~~V~~l~fspdg~-~Lasgs~Dg~I~IWd~~t~~---~~~~l~---------~h~~~It~i~fspd----g~~Latgs~-  569 (784)
                      ..-+.|+|.|||. .|+++...|.|++++.+...   .+..+.         ........|+|+|+    +.+.++-+. 
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~   93 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN   93 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence            4578999999996 45556788999999754321   122111         11457889999995    333333222 


Q ss_pred             -C----------CeEEEEcCCCC----------cceeeec-cCCCCCeEEEEEcCCCCcEEEEEeCC-------------
Q 047260          570 -D----------KSVRLWDAANP----------NFCSQAY-TGHSSPIMSLDFHPKKTDLFCFCDND-------------  614 (784)
Q Consensus       570 -D----------g~I~IWdl~~~----------~~~~~~~-~~h~~~V~sl~~sp~~~~ll~sgs~d-------------  614 (784)
                       +          ..|.-|.+...          +.+.... .........|.|.||+..++.+|+..             
T Consensus        94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~~  173 (463)
T 2wg3_C           94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGLS  173 (463)
T ss_dssp             CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTCC
T ss_pred             CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccCcC
Confidence             1          13444555421          1111111 11223467899999997444444421             


Q ss_pred             ---CeEEEEeCCCC------e---------------eEEee-cCCeeEEEEecCC-----C-EEEEEECCC----cEEEE
Q 047260          615 ---NEIQYWSINPF------L---------------CTHIT-KGGTAQVRFQPRI-----G-QLLAAASDK----VVSIF  659 (784)
Q Consensus       615 ---g~I~iwDl~~~------~---------------~~~~~-~~~v~~v~fsp~~-----~-~Ll~~s~Dg----~I~Iw  659 (784)
                         |.|.-.|.+..      .               .+... -.....++|+|..     . +++++...|    .-.|.
T Consensus       174 ~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~ei~  253 (463)
T 2wg3_C          174 DFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRHPTDININLTILCSDSNGKNRSSARIL  253 (463)
T ss_dssp             SCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEEESSCSSTTCSEEEEEECC------CEEEE
T ss_pred             CCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcceEEECCCCCCcccceEEEecccCCCCCCCCeEe
Confidence               22333333321      0               01111 1234567899873     3 344333212    12333


Q ss_pred             ECCCC------eEEEEEeCCC-CCEEEEEEcC-------CCCEEEEEeCCeEEEEeCCCCc---eEEEe-c--------c
Q 047260          660 DIETD------RQTHSLQGHA-ELVNYICWDT-------NGDYLASVSQNLVKVWSMASGE---CIQEL-S--------S  713 (784)
Q Consensus       660 Dl~t~------~~i~~l~~h~-~~V~sl~~sp-------dg~~Lasgsdd~I~IwDl~t~~---~i~~l-~--------~  713 (784)
                      .+..+      .++..+..|. ..+..+.|-.       .|.+|+..-.+.|....+....   ....+ .        .
T Consensus       254 ~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~~~~g~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~  333 (463)
T 2wg3_C          254 QIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVFGDRNGNFLTLQQSPVTKQWQEKPLCLGTSGSCRGY  333 (463)
T ss_dssp             EEC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEEEETTSCEEEEEC-----CCEEEEECEEETTSSCSC
T ss_pred             eeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEEecCCCcEEEEEeCCCCceeeEEEeecCCccccccc
Confidence            33322      2344443221 4677777743       2445655444555555554321   11122 1        1


Q ss_pred             CCCceEEEEEecCCCEEEEEE
Q 047260          714 NGNQFHSCVFHPSYSTLLVVG  734 (784)
Q Consensus       714 ~~~~I~sl~fspdg~~L~s~s  734 (784)
                      ....+..+.+.|+|.++++..
T Consensus       334 ~~~r~~~v~~~pdG~Lyv~~~  354 (463)
T 2wg3_C          334 FSGHILGFGEDELGEVYILSS  354 (463)
T ss_dssp             CCSEEEEEEECTTCCEEEEEE
T ss_pred             ccCcceEEEECCCCCEEEEec
Confidence            235689999999998777665

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=91.49  E-value=16  Score=39.44  Aligned_cols=142  Identities=9%  Similarity=0.062  Sum_probs=82.3

Q ss_pred             CeeEEEEe---cC----CCEEEEEEC-CCcEEEEECCCCeEEEEEeC----C--------------CCCEEEEEEcCC--
Q 047260          634 GTAQVRFQ---PR----IGQLLAAAS-DKVVSIFDIETDRQTHSLQG----H--------------AELVNYICWDTN--  685 (784)
Q Consensus       634 ~v~~v~fs---p~----~~~Ll~~s~-Dg~I~IwDl~t~~~i~~l~~----h--------------~~~V~sl~~spd--  685 (784)
                      ....+++.   +.    +.+++++.. ...|.|+|+.+++..+.+..    .              ...|..|+++|+  
T Consensus       153 ~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~  232 (381)
T 3q6k_A          153 YFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDS  232 (381)
T ss_dssp             GEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCT
T ss_pred             ccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcC
Confidence            45677776   22    355566554 68899999999877665521    1              236778889987  


Q ss_pred             --CCEEEEEeCCeEEEEeCC-----CC---ceEEEeccC--CCceEEEEEe-cCCCEEEEEECCCeEEEEECCC-C---c
Q 047260          686 --GDYLASVSQNLVKVWSMA-----SG---ECIQELSSN--GNQFHSCVFH-PSYSTLLVVGGISSLELWNMAE-N---K  748 (784)
Q Consensus       686 --g~~Lasgsdd~I~IwDl~-----t~---~~i~~l~~~--~~~I~sl~fs-pdg~~L~s~s~dg~I~Iwdl~~-~---~  748 (784)
                        ++.|.-..-..-++|.+.     +.   ..+..+-..  ...-..+++. .+|..+++--....|..|+..+ .   .
T Consensus       233 ~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~  312 (381)
T 3q6k_A          233 EGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMK  312 (381)
T ss_dssp             TSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGG
T ss_pred             CCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccC
Confidence              677766653333344332     21   222222222  1333455675 4565555555667899999876 2   1


Q ss_pred             eEEeccc---CCceEEEEEeCCCCEEEEEE
Q 047260          749 SMTIAAH---ENIISALAQSPVTGMVASAS  775 (784)
Q Consensus       749 ~~~~~~h---~~~V~slafspdg~~LaSgs  775 (784)
                      ......+   -..+..+.+..++.+.+..+
T Consensus       313 n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn  342 (381)
T 3q6k_A          313 NTDVVYTSSRFVFGTDISVDSKGGLWFMSN  342 (381)
T ss_dssp             GEEEEEECTTCCSEEEEEECTTSCEEEEEC
T ss_pred             ceEEEEECCCccccCeEEECCCCeEEEEEC
Confidence            1222222   23477888888887666553

>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*

Probab=90.42  E-value=34  Score=40.55  Aligned_cols=145  Identities=14%  Similarity=0.097  Sum_probs=75.3

Q ss_pred             CCceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCceeeecCCC-------CCCeEEEEEccC-CCEEEEEeCCCe----E
Q 047260          507 NSKVTCCHFSSD-GKLLASSGHDRKVVLWNMDTLQTESTPEDH-------KSVVTDVRFRPN-SSQLATASVDKS----V  573 (784)
Q Consensus       507 ~~~V~~l~fspd-g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h-------~~~It~i~fspd-g~~Latgs~Dg~----I  573 (784)
                      .+.|.+|+++|. ...+++++..+.|...+= .++.-..+..+       ...|.+|+++|. ...++.+..+..    -
T Consensus        14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~D-gG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~   92 (789)
T 1sqj_A           14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDA-GTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA   92 (789)
T ss_dssp             CSCEEEEEECSSSTTCEEEEESSSCEEEEET-TTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred             CCcEEEEEECCCCCCEEEEEecCCCEEEecC-CCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence            468999999995 456666777776665542 33333333222       246999999984 344555443211    3


Q ss_pred             EEEcCCC-CcceeeeccC--------CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCC---CCeeEEee------cCCe
Q 047260          574 RLWDAAN-PNFCSQAYTG--------HSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSIN---PFLCTHIT------KGGT  635 (784)
Q Consensus       574 ~IWdl~~-~~~~~~~~~~--------h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~---~~~~~~~~------~~~v  635 (784)
                      .||...+ ++.-......        ....+..++++|.....++.+...+.|.. ..+   +.+.+...      ...+
T Consensus        93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~~-S~DgG~TW~~~~~~~~~~~~~~~~  171 (789)
T 1sqj_A           93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWK-SSDRAKTWTNVTSIPDAFTNGIGY  171 (789)
T ss_dssp             EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEEE-ESSTTSSCEEETTSCCCCSTTTCE
T ss_pred             EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEEE-ECCCCcccCCCccCccccCCCCCe
Confidence            3443333 2211111110        01135678888876556666654444332 222   12222111      1346


Q ss_pred             eEEEEecCC-CEEEEEECC
Q 047260          636 AQVRFQPRI-GQLLAAASD  653 (784)
Q Consensus       636 ~~v~fsp~~-~~Ll~~s~D  653 (784)
                      ..+.++|.. ..++++..+
T Consensus       172 ~~i~~~p~~~~~~~~~~~~  190 (789)
T 1sqj_A          172 TSVIFDPERNGTIYASATA  190 (789)
T ss_dssp             EEEEECTTSTTCEEEEESS
T ss_pred             EEEEECCCCCCEEEEEEcC
Confidence            778888853 467777665

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=89.87  E-value=22  Score=37.45  Aligned_cols=258  Identities=8%  Similarity=0.034  Sum_probs=134.2

Q ss_pred             CCEEEEEeCCCeEEEEECCCCc---------eeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEE---EEcCCCCc----
Q 047260          519 GKLLASSGHDRKVVLWNMDTLQ---------TESTPEDHKSVVTDVRFRPNSSQLATASVDKSVR---LWDAANPN----  582 (784)
Q Consensus       519 g~~Lasgs~Dg~I~IWd~~t~~---------~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~---IWdl~~~~----  582 (784)
                      ...+++.+.+|.|+--.+.+.+         .-..++ ..+.+..+........|+.-+..|.++   +|++....    
T Consensus         3 E~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~k-e~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~   81 (327)
T 3uc1_A            3 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLK-QDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTAR   81 (327)
T ss_dssp             CEEEEEEETTSEEEEEEHHHHHHHC--------CCCC-GGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSC
T ss_pred             ccEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccC-CCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCC
Confidence            3467778888888876543211         111222 234455555555556666666777654   45554321    


Q ss_pred             -cee-eecc-CCCCCeEEEEEcCC--CCcEEEEEeCCCeEEEEeCCCCeeE-------Eeec--CCeeEEEEecCCCEEE
Q 047260          583 -FCS-QAYT-GHSSPIMSLDFHPK--KTDLFCFCDNDNEIQYWSINPFLCT-------HITK--GGTAQVRFQPRIGQLL  648 (784)
Q Consensus       583 -~~~-~~~~-~h~~~V~sl~~sp~--~~~ll~sgs~dg~I~iwDl~~~~~~-------~~~~--~~v~~v~fsp~~~~Ll  648 (784)
                       ..+ ..+. .....|.++...++  ....++..+.+|.|+...+......       ..++  ..+..+........++
T Consensus        82 G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~il  161 (327)
T 3uc1_A           82 GQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLL  161 (327)
T ss_dssp             CEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEE
T ss_pred             CEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEE
Confidence             111 1111 23455666554442  3447888899999999887542211       1121  3445555555667899


Q ss_pred             EEECCCcEEEEECC--CC---------eEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEeCCCC-------ceEE
Q 047260          649 AAASDKVVSIFDIE--TD---------RQTHSLQGHAELVNYICWDTNGDYLASVS-QNLVKVWSMASG-------ECIQ  709 (784)
Q Consensus       649 ~~s~Dg~I~IwDl~--t~---------~~i~~l~~h~~~V~sl~~spdg~~Lasgs-dd~I~IwDl~t~-------~~i~  709 (784)
                      ..+..|.+..+...  .-         .....+. ....|.++...+++.+|+..+ .+.++.-.+...       +-+.
T Consensus       162 l~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~  240 (327)
T 3uc1_A          162 LVSANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVL  240 (327)
T ss_dssp             EEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred             EEECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEE
Confidence            99999999888776  21         1111222 344566666655555666655 558777765321       2222


Q ss_pred             Eec--cCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE-------Eec--ccCCceEEEEEeCC-CCEEEEEECC
Q 047260          710 ELS--SNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM-------TIA--AHENIISALAQSPV-TGMVASASHD  777 (784)
Q Consensus       710 ~l~--~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~-------~~~--~h~~~V~slafspd-g~~LaSgs~D  777 (784)
                      .+.  .....+..+....+...++..+.+|.+..++...-...       ...  ...+.|.++...+. ...+.+.+.+
T Consensus       241 ~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~i~~~gR~a~GV~~i~l~~~d~vv~~~~~~~~~~~~~~~~~~  320 (327)
T 3uc1_A          241 TVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLAIARNAEESGDDNAVDAN  320 (327)
T ss_dssp             SSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGGSCBCCTTSCCEECTTCCTTCCEEEEEECC------------
T ss_pred             EEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhhccccCCCCCCeEeEecCCCCEEEEEEEcCCCcceEEEEecC
Confidence            222  22344555555555667888888888877776542211       111  22445666655543 3445555544


Q ss_pred             C
Q 047260          778 S  778 (784)
Q Consensus       778 G  778 (784)
                      |
T Consensus       321 g  321 (327)
T 3uc1_A          321 G  321 (327)
T ss_dssp             -
T ss_pred             C
Confidence            4

>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1

Probab=87.66  E-value=29  Score=36.13  Aligned_cols=185  Identities=10%  Similarity=0.063  Sum_probs=101.7

Q ss_pred             ccCCCEEEEEeCCCeEEEEcCCCCcc-------e-eeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeE-
Q 047260          558 RPNSSQLATASVDKSVRLWDAANPNF-------C-SQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCT-  628 (784)
Q Consensus       558 spdg~~Latgs~Dg~I~IWdl~~~~~-------~-~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~-  628 (784)
                      -++..++++.+.+|.|+--.+..-..       . ...+.. .+.+..+....... .++..+..|.++-+........ 
T Consensus         5 i~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke-~D~l~~~~~~~~~~-~ll~~T~~G~~~~~~~~~ip~~~   82 (312)
T 1suu_A            5 MQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLND-GDEIVIALCVNTHD-YLFMISNEGKLYLINAYEIKDSS   82 (312)
T ss_dssp             ---CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEEEETTC-EEEEEETTSEEEEEEGGGSCC--
T ss_pred             cCCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCC-CCEEEEEEEECCCC-EEEEEECCCeEEEEEHHHCCCCC
Confidence            34667889999999999876543211       1 111222 23444444443434 4445566888776655311000 


Q ss_pred             -----------Eeec--CCeeEEEEec---CCCEEEEEECCCcEEEEECCC-------CeEEEEEeCCCCCEEEEEEcC-
Q 047260          629 -----------HITK--GGTAQVRFQP---RIGQLLAAASDKVVSIFDIET-------DRQTHSLQGHAELVNYICWDT-  684 (784)
Q Consensus       629 -----------~~~~--~~v~~v~fsp---~~~~Ll~~s~Dg~I~IwDl~t-------~~~i~~l~~h~~~V~sl~~sp-  684 (784)
                                 ..+.  ..+..+...+   ...+++..+..|.++...+..       +.....+.. .+.+..+.... 
T Consensus        83 r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~  161 (312)
T 1suu_A           83 RASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFK  161 (312)
T ss_dssp             -----CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECT
T ss_pred             ccCCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCC
Confidence                       0011  2344443322   457789999999999988743       222223333 44555554444 


Q ss_pred             CCCEEEEEeCCeEEEEeCCC---------CceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCC
Q 047260          685 NGDYLASVSQNLVKVWSMAS---------GECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAE  746 (784)
Q Consensus       685 dg~~Lasgsdd~I~IwDl~t---------~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~  746 (784)
                      +..+++....+.+..+....         |.....+.. ...|..+....++..+++.+..|.++..++..
T Consensus       162 ~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e  231 (312)
T 1suu_A          162 DEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKENPYLLIVSENGYGKRLNMSK  231 (312)
T ss_dssp             TCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred             CCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence            44455555566777776543         222222322 45566666655667799999999988888754

>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1

Probab=87.63  E-value=29  Score=36.11  Aligned_cols=225  Identities=9%  Similarity=0.038  Sum_probs=121.0

Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCcee---------eecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcC---CCCcc-
Q 047260          517 SDGKLLASSGHDRKVVLWNMDTLQTE---------STPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDA---ANPNF-  583 (784)
Q Consensus       517 pdg~~Lasgs~Dg~I~IWd~~t~~~~---------~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl---~~~~~-  583 (784)
                      ++..++++.+.+|.|+--.+...+..         ..++.. +.+..+........++..+..|.++-+..   ..... 
T Consensus         6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~-D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~   84 (312)
T 1suu_A            6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDG-DEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA   84 (312)
T ss_dssp             --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTT-CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred             CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCC-CEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence            46678889999999998877543221         122333 34555555555667788888898665544   32110 


Q ss_pred             ----e---eeeccCCCCCeEEEEEcCC--CCcEEEEEeCCCeEEEEeCCCCee-------EEeec--CCeeEEEEecCCC
Q 047260          584 ----C---SQAYTGHSSPIMSLDFHPK--KTDLFCFCDNDNEIQYWSINPFLC-------THITK--GGTAQVRFQPRIG  645 (784)
Q Consensus       584 ----~---~~~~~~h~~~V~sl~~sp~--~~~ll~sgs~dg~I~iwDl~~~~~-------~~~~~--~~v~~v~fsp~~~  645 (784)
                          .   ...+. ....|.++...++  ....++..+..|.++...+.....       ...+.  +.+..+.......
T Consensus        85 ~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~~~  163 (312)
T 1suu_A           85 SKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKDE  163 (312)
T ss_dssp             ---CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECTTC
T ss_pred             CCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCCCC
Confidence                0   01111 2344555544331  233566678899999988753321       11111  3455555555567


Q ss_pred             EEEEEECCCcEEEEECCC---------CeEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEeCCC-------CceE
Q 047260          646 QLLAAASDKVVSIFDIET---------DRQTHSLQGHAELVNYICWDTNGDYLASVS-QNLVKVWSMAS-------GECI  708 (784)
Q Consensus       646 ~Ll~~s~Dg~I~IwDl~t---------~~~i~~l~~h~~~V~sl~~spdg~~Lasgs-dd~I~IwDl~t-------~~~i  708 (784)
                      .++..+.+|.+..+....         |.....+. ....|..+....++..|++.+ .+.++..++..       ++=+
T Consensus       164 ~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~-~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~~~~~R~~kGv  242 (312)
T 1suu_A          164 KVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLK-EGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISELKRGATGY  242 (312)
T ss_dssp             EEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCC-TTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGSCBCCTTCCCE
T ss_pred             EEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeC-CCCEEEEEEEECCCCeEEEEECCCceEEEEHHHhcccCCCCCCE
Confidence            899999999999998743         11222232 244566665544555555555 55777777642       1212


Q ss_pred             EEec---cCCCceEEEEEecCCCEEEEEECCCeEEEEEC
Q 047260          709 QELS---SNGNQFHSCVFHPSYSTLLVVGGISSLELWNM  744 (784)
Q Consensus       709 ~~l~---~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl  744 (784)
                      ..+.   .....+..+....+...++..+..|.+.-...
T Consensus       243 ~~~~~~k~~~~~lv~~~~~~~~~~l~~~t~~g~~~r~~~  281 (312)
T 1suu_A          243 TSYKKSDKKAGSVVDAIAVSEDDEILLVSKRSKALRTVA  281 (312)
T ss_dssp             ECSCTTCTTTCSEEEEEEECTTCEEEEEETTCEEEEEEG
T ss_pred             EeeEccCCCCCeEEEEEEeCCCCEEEEEeCCCeEEEEEc
Confidence            2222   22234444433344556777777775444443

>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}

Probab=86.69  E-value=38  Score=36.50  Aligned_cols=225  Identities=7%  Similarity=0.024  Sum_probs=112.5

Q ss_pred             CCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcc-----------eeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEE
Q 047260          550 SVVTDVRFRPNSSQLATASVDKSVRLWDAANPNF-----------CSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQ  618 (784)
Q Consensus       550 ~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~-----------~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~  618 (784)
                      ..|..|+..  ....+.-..||.|..|-......           ...........|..|+...   ...+.-..||.|+
T Consensus        75 ~~v~~va~G--~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va~G~---~hs~al~~~G~v~  149 (423)
T 3mvd_K           75 PDAVDISAG--GMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAGD---SHSACLLEDGRVF  149 (423)
T ss_dssp             SSEEEEEEC--SSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSSCEEEEEECS---SEEEEEETTSCEE
T ss_pred             CCceEEeeC--CCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCCCCEEEEEcCc---CeEEEEeCCCeEE
Confidence            346666653  44666667899999996543110           0000111234566666543   2444556799999


Q ss_pred             EEeC--CCCee----------E-EeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCC---------------------
Q 047260          619 YWSI--NPFLC----------T-HITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETD---------------------  664 (784)
Q Consensus       619 iwDl--~~~~~----------~-~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~---------------------  664 (784)
                      .|-.  +..-.          . .........+.+..-..+.++...+|.|+.|-....                     
T Consensus       150 ~wG~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~  229 (423)
T 3mvd_K          150 AWGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRD  229 (423)
T ss_dssp             EEECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTT
T ss_pred             EEeCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCccccccccccccccc
Confidence            9975  32111          1 011112222333344467777788999999964321                     


Q ss_pred             --eEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCC-----------ceEEEeccCCCceEEEEEecCCCEEE
Q 047260          665 --RQTHSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASG-----------ECIQELSSNGNQFHSCVFHPSYSTLL  731 (784)
Q Consensus       665 --~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~-----------~~i~~l~~~~~~I~sl~fspdg~~L~  731 (784)
                        .+..........|..|+......+++...++.|+.|-....           ............|..++.  -..+.+
T Consensus       230 ~~~p~~v~~~~~~~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~--G~~ht~  307 (423)
T 3mvd_K          230 LLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAG--GQHHTV  307 (423)
T ss_dssp             TSSCEEECCTTCCCEEEEEEETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEE--CSSEEE
T ss_pred             ccCCeEEeecCCccEEEEEECCcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEc--ccCeEE
Confidence              11111111233455555442222222123557777754321           111111111234555444  334677


Q ss_pred             EEECCCeEEEEECCCC---------c-e---EEecccCCceEEEEEeCCCCEEEEEECCCcEEEe
Q 047260          732 VVGGISSLELWNMAEN---------K-S---MTIAAHENIISALAQSPVTGMVASASHDSSVKLW  783 (784)
Q Consensus       732 s~s~dg~I~Iwdl~~~---------~-~---~~~~~h~~~V~slafspdg~~LaSgs~DG~V~IW  783 (784)
                      +...+|.|+.|-....         . .   ..+......|..|+...  ...+....||.|+.|
T Consensus       308 alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~--~hs~alt~~G~v~~w  370 (423)
T 3mvd_K          308 ILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGE--VCSYAVTIDGKLYSW  370 (423)
T ss_dssp             EEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEET--TEEEEEETTSCEEEE
T ss_pred             EEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcCC--CeEEEEcCCCCEEEE
Confidence            7788899999965321         1 1   12222233677776653  333444688888888

>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*

Probab=86.41  E-value=59  Score=38.44  Aligned_cols=142  Identities=10%  Similarity=0.093  Sum_probs=69.9

Q ss_pred             CCCeEEEEEccC-CCEEEEEeCCCeEEEEcCCCCcceeeeccC------CCCCeEEEEEcCCCCcEEEEEeCC------C
Q 047260          549 KSVVTDVRFRPN-SSQLATASVDKSVRLWDAANPNFCSQAYTG------HSSPIMSLDFHPKKTDLFCFCDND------N  615 (784)
Q Consensus       549 ~~~It~i~fspd-g~~Latgs~Dg~I~IWdl~~~~~~~~~~~~------h~~~V~sl~~sp~~~~ll~sgs~d------g  615 (784)
                      ...|.+|+++|. ...++++...+.|...+=. ++.-......      ....|.+|++.|.....++.+..+      +
T Consensus        14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~Dg-G~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~   92 (789)
T 1sqj_A           14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDAG-TSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA   92 (789)
T ss_dssp             CSCEEEEEECSSSTTCEEEEESSSCEEEEETT-TTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred             CCcEEEEEECCCCCCEEEEEecCCCEEEecCC-CCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence            468999999994 4566777776765544322 2211111111      124699999998654444444322      3


Q ss_pred             eEEEEeCCCCeeEEeec----------C--CeeEEEEecCC-CEEEEEECCCcEEEEECCCCeEEEEEeC------CCCC
Q 047260          616 EIQYWSINPFLCTHITK----------G--GTAQVRFQPRI-GQLLAAASDKVVSIFDIETDRQTHSLQG------HAEL  676 (784)
Q Consensus       616 ~I~iwDl~~~~~~~~~~----------~--~v~~v~fsp~~-~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~------h~~~  676 (784)
                      .|.. ..+.++.-....          +  .+..++++|.. +.++++...+.|.. ....++.-..+..      ....
T Consensus        93 ~v~~-S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~~-S~DgG~TW~~~~~~~~~~~~~~~  170 (789)
T 1sqj_A           93 AFYV-SEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWK-SSDRAKTWTNVTSIPDAFTNGIG  170 (789)
T ss_dssp             EEEE-ESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEEE-ESSTTSSCEEETTSCCCCSTTTC
T ss_pred             EEEE-ECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEEE-ECCCCcccCCCccCccccCCCCC
Confidence            3322 222222211111          1  24567888754 45555553443321 2222332222221      1246


Q ss_pred             EEEEEEcCC-CCEEEEEe
Q 047260          677 VNYICWDTN-GDYLASVS  693 (784)
Q Consensus       677 V~sl~~spd-g~~Lasgs  693 (784)
                      +..|.++|. +..++++.
T Consensus       171 ~~~i~~~p~~~~~~~~~~  188 (789)
T 1sqj_A          171 YTSVIFDPERNGTIYASA  188 (789)
T ss_dssp             EEEEEECTTSTTCEEEEE
T ss_pred             eEEEEECCCCCCEEEEEE
Confidence            788999874 33444444

>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}

Probab=85.52  E-value=34  Score=34.88  Aligned_cols=193  Identities=12%  Similarity=0.030  Sum_probs=109.1

Q ss_pred             CCCeEEEEEccCCCEEEEEeCCCeEEE---EcCCCCcceeeeccCCCCCeEEEEEcCC-CCcEEEEEeCCCeEEEEeCCC
Q 047260          549 KSVVTDVRFRPNSSQLATASVDKSVRL---WDAANPNFCSQAYTGHSSPIMSLDFHPK-KTDLFCFCDNDNEIQYWSINP  624 (784)
Q Consensus       549 ~~~It~i~fspdg~~Latgs~Dg~I~I---Wdl~~~~~~~~~~~~h~~~V~sl~~sp~-~~~ll~sgs~dg~I~iwDl~~  624 (784)
                      .+.+..+.......+|+.-+.+|.++-   |++....... . ......|..+.. .+ ....++..+.+|.|+...+..
T Consensus        23 gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~-l-l~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~   99 (276)
T 3no0_A           23 KAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS-L-KSREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAE   99 (276)
T ss_dssp             CCCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECC-C-SSTTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGG
T ss_pred             CCeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccc-c-CCCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHH
Confidence            345555555555556666677787654   4443221111 2 233556776654 32 344777889999999998764


Q ss_pred             Ce------eEEeec--CCeeEEEEecCCCEEEEEECCCcEEEEECCC---------CeEEEEEeCCCCCEEEEEEcCCCC
Q 047260          625 FL------CTHITK--GGTAQVRFQPRIGQLLAAASDKVVSIFDIET---------DRQTHSLQGHAELVNYICWDTNGD  687 (784)
Q Consensus       625 ~~------~~~~~~--~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t---------~~~i~~l~~h~~~V~sl~~spdg~  687 (784)
                      ..      ....++  ..+..+........++..+..|.+..++...         |.....+. ....|..+...+++.
T Consensus       100 ~~~~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~-~~d~vv~~~~~~~~~  178 (276)
T 3no0_A          100 FEYKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLE-KNDETSGLRIWNGEP  178 (276)
T ss_dssp             TTTCSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEESSCS
T ss_pred             hhhhcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccC-CCCEEEEEEEeCCCC
Confidence            32      111121  3444454555567899999999998887532         22222233 234555555445555


Q ss_pred             EEEEEe-CCeEEEEeCCC-------CceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEE--EECCC
Q 047260          688 YLASVS-QNLVKVWSMAS-------GECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLEL--WNMAE  746 (784)
Q Consensus       688 ~Lasgs-dd~I~IwDl~t-------~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~I--wdl~~  746 (784)
                      +++..+ .+.++...+..       ++-+..+ ...+.+..+....+...++..+.+|.+..  ++..+
T Consensus       179 ~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~  246 (276)
T 3no0_A          179 YLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKD  246 (276)
T ss_dssp             EEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGG
T ss_pred             EEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHH
Confidence            555555 55777776532       2233344 33345555544444456888888888877  77643

>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1

Probab=83.42  E-value=0.42  Score=40.07  Aligned_cols=31  Identities=19%  Similarity=0.307  Sum_probs=28.4

Q ss_pred             hHHHHHHHHhhcCChHHHHHHHHHhcCCCCC
Q 047260           11 MLDVYIHDYFLKRKLHASAKAFMTEGKVATD   41 (784)
Q Consensus        11 ~l~~yiydy~~k~~~~~~a~~~~~e~~~~~~   41 (784)
                      =||.-|++||..+|+.+++.+|.+|.+++.+
T Consensus        12 EL~kaI~~YL~~~~~~~~~~alr~e~~~~~~   42 (88)
T 1uuj_A           12 ELNRAIADYLRSNGYEEAYSVFKKEAELDMN   42 (88)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHhcCCCC
Confidence            4799999999999999999999999987754

>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}

Probab=82.91  E-value=54  Score=35.04  Aligned_cols=229  Identities=8%  Similarity=0.047  Sum_probs=124.7

Q ss_pred             cCCCCEEEEEeCCCeEEEEECCC---------CceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEE---EcCCCCcc
Q 047260          516 SSDGKLLASSGHDRKVVLWNMDT---------LQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRL---WDAANPNF  583 (784)
Q Consensus       516 spdg~~Lasgs~Dg~I~IWd~~t---------~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~I---Wdl~~~~~  583 (784)
                      -++..++++.+.+|.|+--.+..         +.....++ ..+.+..+........|+..+..|.+.-   |++.....
T Consensus         4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r   82 (370)
T 3l6v_A            4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGS   82 (370)
T ss_dssp             CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred             ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCc
Confidence            46778999999999999876532         22233343 3455666665556667777777887654   45543210


Q ss_pred             -----e-eeec-cCCCCCeEEEEEcCC--CCcEEEEEeCCCeEEEEeCCCCee-------EEeec--CCeeEEEEecCCC
Q 047260          584 -----C-SQAY-TGHSSPIMSLDFHPK--KTDLFCFCDNDNEIQYWSINPFLC-------THITK--GGTAQVRFQPRIG  645 (784)
Q Consensus       584 -----~-~~~~-~~h~~~V~sl~~sp~--~~~ll~sgs~dg~I~iwDl~~~~~-------~~~~~--~~v~~v~fsp~~~  645 (784)
                           . ...+ ......|.++....+  ....++.++..|.++...+.....       ...++  ..+..+.......
T Consensus        83 ~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~~~~~  162 (370)
T 3l6v_A           83 NARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDGDR  162 (370)
T ss_dssp             TSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEECSCC
T ss_pred             ccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEEEEEEeCCCc
Confidence                 1 1111 123455666554332  234677788899999988653221       11111  3444445555566


Q ss_pred             EEEEEECCCcEEEEECCCC-------eEEEEEe-CCCCCEEEEEEcC---------------------------------
Q 047260          646 QLLAAASDKVVSIFDIETD-------RQTHSLQ-GHAELVNYICWDT---------------------------------  684 (784)
Q Consensus       646 ~Ll~~s~Dg~I~IwDl~t~-------~~i~~l~-~h~~~V~sl~~sp---------------------------------  684 (784)
                      .++..+.+|.+..|+...-       .-++-+. .....|.++...+                                 
T Consensus       163 ~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~~~  242 (370)
T 3l6v_A          163 DVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLAKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVAD  242 (370)
T ss_dssp             EEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEECCC-------------------------------
T ss_pred             eEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeCCCCEEEEEEEecccccccccccccccccccccccccccccccccc
Confidence            7888888898888875421       1111111 1234454444333                                 


Q ss_pred             --CCCEEEEEeC-CeEEEEeCCC-------CceEEE--eccCCCceEEEEEecCCCEEEEEECCCeEEEEECC
Q 047260          685 --NGDYLASVSQ-NLVKVWSMAS-------GECIQE--LSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMA  745 (784)
Q Consensus       685 --dg~~Lasgsd-d~I~IwDl~t-------~~~i~~--l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~  745 (784)
                        ++..|++.++ +..+...+..       ++=+..  +....+.+..+.+..+...++..+..|.+.-..+.
T Consensus       243 ~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~~g~lv~~~~v~~~d~i~liT~~G~~iR~~v~  315 (370)
T 3l6v_A          243 NGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLGSTDEVMLISDGGTLVRTRGS  315 (370)
T ss_dssp             ----CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEETTCCEEEEEGG
T ss_pred             ccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecCCCCcEEEEEEeCCCceEEEEcCCCeEEEeeHh
Confidence              3445666664 4777776532       122222  22333455555555555667778888876665543

>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}

Probab=82.00  E-value=51  Score=34.13  Aligned_cols=228  Identities=7%  Similarity=0.041  Sum_probs=121.0

Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCceee---------ecCCCCCCeEEEEEccCCCEEEEEeCCCeEEE---EcCCCCcc-
Q 047260          517 SDGKLLASSGHDRKVVLWNMDTLQTES---------TPEDHKSVVTDVRFRPNSSQLATASVDKSVRL---WDAANPNF-  583 (784)
Q Consensus       517 pdg~~Lasgs~Dg~I~IWd~~t~~~~~---------~l~~h~~~It~i~fspdg~~Latgs~Dg~I~I---Wdl~~~~~-  583 (784)
                      |+..++++.+.+|.|+--.+.+.+...         .++.+ +.+..+........|+..+..|.+.-   +++..... 
T Consensus         1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~-D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~   79 (307)
T 1zi0_A            1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEE-DFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRG   79 (307)
T ss_dssp             CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred             CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCC-CEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCC
Confidence            355678889999999887776533221         12222 34444444445566777777887544   45443221 


Q ss_pred             ----ee-eec-cCCCCCeEEEEEcC--CCCcEEEEEeCCCeEEEEeCCCCe-----eEE--ee--cCCeeEEEEecCCCE
Q 047260          584 ----CS-QAY-TGHSSPIMSLDFHP--KKTDLFCFCDNDNEIQYWSINPFL-----CTH--IT--KGGTAQVRFQPRIGQ  646 (784)
Q Consensus       584 ----~~-~~~-~~h~~~V~sl~~sp--~~~~ll~sgs~dg~I~iwDl~~~~-----~~~--~~--~~~v~~v~fsp~~~~  646 (784)
                          .. ..+ ......|.++...+  +....++..+.+|.++...+....     -+.  .+  .+.+..+........
T Consensus        80 a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~~~~~~~  159 (307)
T 1zi0_A           80 ARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDE  159 (307)
T ss_dssp             SCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEECTTCE
T ss_pred             CCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEEEeCCCCE
Confidence                11 111 12334566664432  223356678889999998774211     111  11  134444444455667


Q ss_pred             EEEEECCCcEEEEECCCC---------eEEEEEeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEeCCC-------Cc--e
Q 047260          647 LLAAASDKVVSIFDIETD---------RQTHSLQGHAELVNYICWDTNGDYLASVS-QNLVKVWSMAS-------GE--C  707 (784)
Q Consensus       647 Ll~~s~Dg~I~IwDl~t~---------~~i~~l~~h~~~V~sl~~spdg~~Lasgs-dd~I~IwDl~t-------~~--~  707 (784)
                      ++..+.+|.+..++...-         .....+. ....|.++....++..|+..+ .+.++-.++..       ++  .
T Consensus       160 i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~  238 (307)
T 1zi0_A          160 VMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVI  238 (307)
T ss_dssp             EEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCEE
T ss_pred             EEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCEE
Confidence            888999999888876421         1111222 344566665545555555555 44777776632       11  1


Q ss_pred             EEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCC
Q 047260          708 IQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAE  746 (784)
Q Consensus       708 i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~  746 (784)
                      ...+....+.+..+....+...++..+.+|.+.-+++..
T Consensus       239 ~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~  277 (307)
T 1zi0_A          239 SIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE  277 (307)
T ss_dssp             SSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred             eeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence            222333334555554444455677888888777666554

>1qb3_A Cyclin-dependent kinases regulatory subunit; cell cycle mutagenesis domain swapping, cyclin-dependent KIN cycle; 3.00A {Saccharomyces cerevisiae} SCOP: d.97.1.1

Probab=80.51  E-value=0.31  Score=44.27  Aligned_cols=9  Identities=22%  Similarity=0.445  Sum_probs=4.0

Q ss_pred             ccchhhHhh
Q 047260          161 LMDANKMAL  169 (784)
Q Consensus       161 ~~~~~~~~~  169 (784)
                      |.|..|++|
T Consensus        13 l~d~er~~l   21 (150)
T 1qb3_A           13 LTDQERARV   21 (150)
T ss_dssp             CCHHHHHHH
T ss_pred             chHHHHHHH
Confidence            334444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	784
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-33
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-18
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-14
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-07
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-30
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-19
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-14
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-13
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	7e-25
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	7e-14
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	6e-13
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-12
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	8e-05
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	9e-23
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	6e-14
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	6e-12
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-22
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	6e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-20
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-14
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	6e-05
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.004
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	6e-20
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-17
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-12
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	8e-08
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-16
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-09
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-07
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.002
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-15
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-08
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-15
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.003
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	5e-14
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-06
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	5e-13
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-12
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	5e-12
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-12
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	8e-09
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-06
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-12
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	6e-12
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	4e-09
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	4e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-10
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	6e-09
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	7e-04
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	1e-08
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-08
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-07
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	7e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	8e-04
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	5e-08
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	2e-05
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	6e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	7e-04

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  127 bits (320), Expect = 5e-33
 Identities = 60/309 (19%), Positives = 115/309 (37%), Gaps = 23/309 (7%)

Query: 499 EVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFR 558
           E   +    S VT   F     ++ S+  D  + +W+ +T   E T + H   V D+ F 
Sbjct: 9   EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFD 68

Query: 559 PNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQ 618
            +   LA+ S D +++LWD          +    +             +    D   ++ 
Sbjct: 69  HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMW 128

Query: 619 YWSINPFLCTHITKGGTAQVRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHSLQGHAELV 677
                  + T        ++    + G L+A+ S D+ V ++ + T      L+ H  +V
Sbjct: 129 EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVV 188

Query: 678 NYICWDTNGDYLASVSQ---------------------NLVKVWSMASGECIQELSSNGN 716
             I W     Y +                           +K+W +++G C+  L  + N
Sbjct: 189 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN 248

Query: 717 QFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASAS 775
                +FH     +L      +L +W+    + M T+ AHE+ +++L        V + S
Sbjct: 249 WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGS 308

Query: 776 HDSSVKLWK 784
            D +VK+W+
Sbjct: 309 VDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 83.6 bits (205), Expect = 4e-18
 Identities = 44/222 (19%), Positives = 77/222 (34%), Gaps = 28/222 (12%)

Query: 483 HSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTE 542
            S +   +  +  T   V         V     + DG L+AS  +D+ V +W + T + +
Sbjct: 119 ASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECK 178

Query: 543 STPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHP 602
           +   +H+ VV  + + P SS  + +    S          F                   
Sbjct: 179 AELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFL------------------ 220

Query: 603 KKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVR---FQPRIGQLLAAASDKVVSIF 659
                      D  I+ W ++  +C     G    VR   F      +L+ A DK + ++
Sbjct: 221 ------LSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVW 274

Query: 660 DIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQ-NLVKVW 700
           D +  R   +L  H   V  + +     Y+ + S    VKVW
Sbjct: 275 DYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 73.2 bits (178), Expect = 2e-14
 Identities = 20/82 (24%), Positives = 39/82 (47%)

Query: 496 TFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDV 555
           T   +  +   ++ V    F S GK + S   D+ + +W+    +   T   H+  VT +
Sbjct: 236 TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSL 295

Query: 556 RFRPNSSQLATASVDKSVRLWD 577
            F   +  + T SVD++V++W+
Sbjct: 296 DFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.7 bits (122), Expect = 2e-07
 Identities = 25/121 (20%), Positives = 55/121 (45%), Gaps = 2/121 (1%)

Query: 665 RQTHSLQGHAELVNYICWDTNGDYLASVSQ-NLVKVWSMASGECIQELSSNGNQFHSCVF 723
            + ++L GH   V  + +      + S S+   +KVW   +G+  + L  + +      F
Sbjct: 8   PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISF 67

Query: 724 HPSYSTLLVVGGISSLELWNMAENKSMT-IAAHENIISALAQSPVTGMVASASHDSSVKL 782
             S   L       +++LW+    + +  +  H++ +S+++  P    + SAS D ++K+
Sbjct: 68  DHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKM 127

Query: 783 W 783
           W
Sbjct: 128 W 128

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  119 bits (298), Expect = 5e-30
 Identities = 52/285 (18%), Positives = 99/285 (34%), Gaps = 8/285 (2%)

Query: 507 NSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLAT 566
            +K+   H+ +D +LL S+  D K+++W+  T           S V    + P+ + +A 
Sbjct: 55  LAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVAC 114

Query: 567 ASVDKSVRLWDAAN---PNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSIN 623
             +D    +++          S+   GH+  +    F      +    D    +      
Sbjct: 115 GGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETG 174

Query: 624 PFLCTHITKGGTAQVRFQPRIGQLLAAA-SDKVVSIFDIETDRQTHSLQGHAELVNYICW 682
               T     G           +L  +   D    ++D+       +  GH   +N IC+
Sbjct: 175 QQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICF 234

Query: 683 DTNGDYLASVSQN---LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSL 739
             NG+  A+ S +    +               +      S  F  S   LL      + 
Sbjct: 235 FPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNC 294

Query: 740 ELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLW 783
            +W+  +      +A H+N +S L  +     VA+ S DS +K+W
Sbjct: 295 NVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 86.7 bits (213), Expect = 6e-19
 Identities = 41/180 (22%), Positives = 71/180 (39%), Gaps = 6/180 (3%)

Query: 527 HDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQ 586
            D    LW+++T Q  +T   H   V  +   P++    + + D S +LWD      C Q
Sbjct: 162 GDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM-CRQ 220

Query: 587 AYTGHSSPIMSLDFHPKKTDLFCFCDN----DNEIQYWSINPFLCTHITKGGTAQVRFQP 642
            +TGH S I ++ F P         D+      +++               G   V F  
Sbjct: 221 TFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK 280

Query: 643 RIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQ-NLVKVWS 701
               LLA   D   +++D     +   L GH   V+ +    +G  +A+ S  + +K+W+
Sbjct: 281 SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 74.0 bits (180), Expect = 1e-14
 Identities = 15/83 (18%), Positives = 30/83 (36%)

Query: 495 FTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTD 554
                     +    +T   FS  G+LL +   D    +W+            H + V+ 
Sbjct: 258 DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSC 317

Query: 555 VRFRPNSSQLATASVDKSVRLWD 577
           +    +   +AT S D  +++W+
Sbjct: 318 LGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 69.0 bits (167), Expect = 4e-13
 Identities = 39/256 (15%), Positives = 77/256 (30%), Gaps = 7/256 (2%)

Query: 495 FTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTD 554
           +T  +V  I  R+S V  C ++  G  +A  G D    ++N+ T +         +  T 
Sbjct: 85  YTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG 144

Query: 555 VRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHS-SPIMSLDFHPKKTDLFCFCDN 613
                                    +     Q  T    +  +        T LF     
Sbjct: 145 YLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGAC 204

Query: 614 DNEIQYWSINPFLCTHITKGGTAQVR---FQPRIGQLLAAASDKVVSIFDIETDRQTHSL 670
           D   + W +   +C     G  + +    F P        + D    +FD+  D++  + 
Sbjct: 205 DASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY 264

Query: 671 QGHAEL--VNYICWDTNGDYLASVSQ-NLVKVWSMASGECIQELSSNGNQFHSCVFHPSY 727
                +  +  + +  +G  L +        VW     +    L+ + N+          
Sbjct: 265 SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDG 324

Query: 728 STLLVVGGISSLELWN 743
             +      S L++WN
Sbjct: 325 MAVATGSWDSFLKIWN 340

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  105 bits (261), Expect = 7e-25
 Identities = 61/324 (18%), Positives = 104/324 (32%), Gaps = 47/324 (14%)

Query: 507 NSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPED------------------H 548
            S V C  FS+DG+ LA +G ++   ++ +      +   D                   
Sbjct: 62  TSVVCCVKFSNDGEYLA-TGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSS 120

Query: 549 KSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLF 608
              +  V F P+   LAT + D+ +R+WD  N                   F      + 
Sbjct: 121 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVS 180

Query: 609 CFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAAS-DKVVSIFDIETDRQT 667
              D    I          T   + G   V   P  G+ +AA S D+ V ++D ET    
Sbjct: 181 GSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLV 240

Query: 668 HSLQ-------GHAELVNYICWDTNGDYLASVS-------------QNLVKVWSMASGEC 707
             L        GH + V  + +  +G  + S S              N     +  SG C
Sbjct: 241 ERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTC 300

Query: 708 IQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQ-- 764
                 + +   S     +   +L       +  W+      +  +  H N + ++A   
Sbjct: 301 EVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVAN 360

Query: 765 ----SPVTGMVASASHDSSVKLWK 784
                P   + A+ S D   ++WK
Sbjct: 361 GSSLGPEYNVFATGSGDCKARIWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.8 bits (174), Expect = 7e-14
 Identities = 40/215 (18%), Positives = 69/215 (32%), Gaps = 43/215 (20%)

Query: 502 CIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPED-------HKSVVTD 554
            +   +   T      DGK +A+   DR V +W+ +T       +        HK  V  
Sbjct: 200 TLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYS 259

Query: 555 VRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDND 614
           V F  +   + + S+D+SV+LW+  N N  S + T                         
Sbjct: 260 VVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKT------------------------- 294

Query: 615 NEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHA 674
                 S    +     K     V        +L+ + D+ V  +D ++      LQGH 
Sbjct: 295 ----PNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHR 350

Query: 675 ELVNYIC------WDTNGDYLASVSQ-NLVKVWSM 702
             V  +            +  A+ S     ++W  
Sbjct: 351 NSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.1 bits (167), Expect = 6e-13
 Identities = 48/294 (16%), Positives = 94/294 (31%), Gaps = 31/294 (10%)

Query: 480 TLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTL 539
           +L           K           S +  +    FS DGK LA+   DR + +W+++  
Sbjct: 94  SLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENR 153

Query: 540 QTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLD 599
           +     + H+  +  + + P+  +L + S D++VR+WD                 + ++ 
Sbjct: 154 KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS--IEDGVTTVA 211

Query: 600 FHPKKTDLFCFCDNDNEIQYWSINPFLCTHIT----------KGGTAQVRFQPRIGQLLA 649
             P           D  ++ W                     K     V F      +++
Sbjct: 212 VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS 271

Query: 650 AASDKVVSIFDIETDRQT------------HSLQGHAELVNYICWDTNGDYLASVSQ-NL 696
            + D+ V +++++                  +  GH + V  +    N +Y+ S S+   
Sbjct: 272 GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG 331

Query: 697 VKVWSMASGECIQELSSNGNQFHSCV------FHPSYSTLLVVGGISSLELWNM 744
           V  W   SG  +  L  + N   S          P Y+      G     +W  
Sbjct: 332 VLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.1 bits (162), Expect = 2e-12
 Identities = 18/113 (15%), Positives = 35/113 (30%), Gaps = 6/113 (5%)

Query: 471 GGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRK 530
           G   R +      +  ++       +             V     + + + + S   DR 
Sbjct: 272 GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG 331

Query: 531 VVLWNMDTLQTESTPEDHKSVVTDV------RFRPNSSQLATASVDKSVRLWD 577
           V+ W+  +       + H++ V  V         P  +  AT S D   R+W 
Sbjct: 332 VLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.2 bits (100), Expect = 8e-05
 Identities = 16/101 (15%), Positives = 38/101 (37%), Gaps = 4/101 (3%)

Query: 643 RIGQLLAAASDKVVSIFDIETDRQT----HSLQGHAELVNYICWDTNGDYLASVSQNLVK 698
            +   L   ++    +++    R+     H    H  +V  + +  +G+YLA+      +
Sbjct: 27  SVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQ 86

Query: 699 VWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSL 739
           V+ ++ G  +  LS +           + S+      I S+
Sbjct: 87  VYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSV 127

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.3 bits (243), Expect = 9e-23
 Identities = 56/281 (19%), Positives = 105/281 (37%), Gaps = 15/281 (5%)

Query: 507 NSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLAT 566
           +  V  C     G  + S   D  + +W+  T +   T   H   V   + R N     +
Sbjct: 16  DDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGS 74

Query: 567 ASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFL 626
                 V   +          +T     +   +              D  ++ W I    
Sbjct: 75  TDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKR------VVSGSRDATLRVWDIETGQ 128

Query: 627 CTHITKGGTAQVRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHSLQGHAELVNYICWDTN 685
           C H+  G  A VR     G+ + + + D +V ++D ET+   H+LQGH   V  + +D  
Sbjct: 129 CLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD-- 186

Query: 686 GDYLASVSQ-NLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNM 744
           G ++ S S    ++VW + +G CI  L+ + +         +   L+     S++++W++
Sbjct: 187 GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNI--LVSGNADSTVKIWDI 244

Query: 745 AENKSMTIAAHEN--IISALAQSPVTGMVASASHDSSVKLW 783
              + +      N    +          V ++S D +VKLW
Sbjct: 245 KTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLW 285

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.8 bits (174), Expect = 6e-14
 Identities = 40/204 (19%), Positives = 78/204 (38%), Gaps = 20/204 (9%)

Query: 511 TCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVD 570
                  DG+ + S  +D  V +W+ +T     T + H + V  ++F  +   + + S+D
Sbjct: 139 AVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLD 196

Query: 571 KSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHI 630
            S+R+WD    N C    TGH S    ++      ++    + D+ ++ W I    C   
Sbjct: 197 TSIRVWDVETGN-CIHTLTGHQSLTSGMELKD---NILVSGNADSTVKIWDIKTGQCLQT 252

Query: 631 TKGGTAQVRFQPRI----GQLLAAASDKVVSIFDIETDRQTHSLQ-----GHAELVNYIC 681
            +G          +      ++ ++ D  V ++D++T     +L      G   +V  I 
Sbjct: 253 LQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIR 312

Query: 682 WDTNGDYLASVSQN-----LVKVW 700
                   A  S+N      + V 
Sbjct: 313 ASNTKLVCAVGSRNGTEETKLLVL 336

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.2 bits (157), Expect = 6e-12
 Identities = 49/282 (17%), Positives = 100/282 (35%), Gaps = 20/282 (7%)

Query: 479 GTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDT 538
             +  S    +                     T        K + S   D  + +W+++T
Sbjct: 67  DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIET 126

Query: 539 LQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSL 598
            Q       H + V  V++     ++ + + D  V++WD      C     GH++ + SL
Sbjct: 127 GQCLHVLMGHVAAVRCVQYDGR--RVVSGAYDFMVKVWDP-ETETCLHTLQGHTNRVYSL 183

Query: 599 DFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVR-FQPRIGQLLAAASDKVVS 657
            F             D  I+ W +    C H   G  +     + +   L++  +D  V 
Sbjct: 184 QFDGI---HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVK 240

Query: 658 IFDIETDRQTHSLQGHAELVNYICWDT-NGDYLASVSQ-NLVKVWSMASGECIQELSSNG 715
           I+DI+T +   +LQG  +  + +     N +++ + S    VK+W + +GE I+ L +  
Sbjct: 241 IWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLE 300

Query: 716 NQFH-----SCVFHPSYSTLLVVGGIS-----SLELWNMAEN 747
           +              +   +  VG  +      L + +   +
Sbjct: 301 SGGSGGVVWRIRASNT-KLVCAVGSRNGTEETKLLVLDFDVD 341

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.2 bits (240), Expect = 2e-22
 Identities = 33/285 (11%), Positives = 79/285 (27%), Gaps = 8/285 (2%)

Query: 507 NSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTEST-----PEDHKSVVTDVRFRPNS 561
              V     S+  + + + G    V +W++     +S        +  + +   +  P+ 
Sbjct: 51  GEVVCAVTISNPTRHVYT-GGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG 109

Query: 562 SQLATASVDKSVRLWDAANPNFCSQAYTGHS--SPIMSLDFHPKKTDLFCFCDNDNEIQY 619
             L       ++ +WD A P    +A    S  +          K    C  D +  +  
Sbjct: 110 CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWD 169

Query: 620 WSINPFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNY 679
                 +         A        G  L               + +          +  
Sbjct: 170 LHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFS 229

Query: 680 ICWDTNGDYLASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSL 739
           + +   G++LA   ++        +     +L  + +   S  F       +  G  + L
Sbjct: 230 LGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLL 289

Query: 740 ELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKLWK 784
             W      S+  +   + + +   S     + + S D    +++
Sbjct: 290 NAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (109), Expect = 6e-06
 Identities = 23/104 (22%), Positives = 42/104 (40%), Gaps = 6/104 (5%)

Query: 646 QLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASG 705
           Q +    D ++        RQ ++L  H E+V  +       ++ +  +  VKVW ++  
Sbjct: 24  QPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHP 82

Query: 706 ECIQELSSNGNQFH-----SCVFHPSYSTLLVVGGISSLELWNM 744
                +S            SC   P   TL+V G  S+L +W++
Sbjct: 83  GNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDL 126

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 91.1 bits (224), Expect = 3e-20
 Identities = 36/276 (13%), Positives = 82/276 (29%), Gaps = 18/276 (6%)

Query: 510 VTCCHFSSDGKLLASSGHDRKVVLWNMDT--LQTESTPEDHKSVVTDVRFRPNSSQLATA 567
           ++C  ++ D   +A   ++ +V ++             ++H   VT V + P+S+++ T 
Sbjct: 10  ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69

Query: 568 SVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLC 627
             D++  +W      +         +              F        I          
Sbjct: 70  GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND 129

Query: 628 THITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGD 687
             + K     +R                 ++  ++    +  L   +       +     
Sbjct: 130 WWVCKHIKKPIRS----------------TVLSLDWHPNSVLLAAGSCDFKCRIFSAYIK 173

Query: 688 YLASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAEN 747
            +            M  GE + E SS+    H   F  + S +  V   S++ L +  + 
Sbjct: 174 EVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK 233

Query: 748 KSMTIAAHENIISALAQSPVTGMVASASHDSSVKLW 783
            ++   A E +            + +A HD    L+
Sbjct: 234 MAVATLASETLPLLAVTFITESSLVAAGHDCFPVLF 269

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 73.4 bits (178), Expect = 2e-14
 Identities = 37/321 (11%), Positives = 87/321 (27%), Gaps = 29/321 (9%)

Query: 492 TKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTP--EDHK 549
             G  + +V  ++  N +VT   ++ D   + + G DR   +W +     + T       
Sbjct: 36  KSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRIN 95

Query: 550 SVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSL--DFHPKKTDL 607
                VR+ PN  + A  S  + + +      N              ++        + L
Sbjct: 96  RAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVL 155

Query: 608 FCFCDNDNEIQYWSIN---------------------PFLCTHITKGGTAQVRFQPRIGQ 646
                 D + + +S                           +  + G    V F     +
Sbjct: 156 LAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSR 215

Query: 647 LLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGE 706
           +   + D  V + D +      +L      +  + + T    +A+       +++  S  
Sbjct: 216 VAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAA 275

Query: 707 CIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIAAHENIISALAQSP 766
                    +           +                A   +   + H+N +S ++   
Sbjct: 276 GKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLS 335

Query: 767 ----VTGMVASASHDSSVKLW 783
                     +   D  + +W
Sbjct: 336 GGKAKCSQFCTTGMDGGMSIW 356

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.7 bits (101), Expect = 6e-05
 Identities = 23/207 (11%), Positives = 54/207 (26%), Gaps = 52/207 (25%)

Query: 588 YTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQL 647
           ++    PI    ++                                              
Sbjct: 3   HSFLVEPISCHAWNKD-----------------------------------------RTQ 21

Query: 648 LAAAS-DKVVSIFDIETDR--QTHSLQGHAELVNYICWDTNGDYLASVSQ-NLVKVWSMA 703
           +A    +  V I++   ++  Q H L+ H   V  + W  + + + +        VW++ 
Sbjct: 22  IAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK 81

Query: 704 SGECIQELSSNGNQFHSCVFHPSYSTLLVVGG-------ISSLELWNMAENKSMTIAAHE 756
                  L        +     + +      G       I   E  N             
Sbjct: 82  GRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIR 141

Query: 757 NIISALAQSPVTGMVASASHDSSVKLW 783
           + + +L   P + ++A+ S D   +++
Sbjct: 142 STVLSLDWHPNSVLLAAGSCDFKCRIF 168

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.5 bits (98), Expect = 2e-04
 Identities = 13/81 (16%), Positives = 30/81 (37%), Gaps = 5/81 (6%)

Query: 667 THSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASG--ECIQELSSNGNQFHSCVF 723
            HS     E ++   W+ +   +A    N  V ++  +      + EL  +  Q     +
Sbjct: 2   YHSF--LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDW 59

Query: 724 HPSYSTLLVVGGISSLELWNM 744
            P  + ++  G   +  +W +
Sbjct: 60  APDSNRIVTCGTDRNAYVWTL 80

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.0 bits (94), Expect = 4e-04
 Identities = 20/130 (15%), Positives = 37/130 (28%), Gaps = 46/130 (35%)

Query: 497 FCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPED--------- 547
              V  + S    +    F ++  L+A+ GHD   VL+  D+   + +            
Sbjct: 233 KMAVATLASETLPLLAVTFITESSLVAA-GHDCFPVLFTYDSAAGKLSFGGRLDVPKQSS 291

Query: 548 --------------------------------HKSVVTDVRFRPNS----SQLATASVDK 571
                                           HK+ V+ +          SQ  T  +D 
Sbjct: 292 QRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDG 351

Query: 572 SVRLWDAANP 581
            + +WD  + 
Sbjct: 352 GMSIWDVRSL 361

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.9 bits (86), Expect = 0.004
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 6/46 (13%)

Query: 510 VTCCHFSSDGK----LLASSGHDRKVVLWNMDTLQTESTPEDHKSV 551
           V+     S GK       ++G D  + +W++ +L  ES  +D K V
Sbjct: 328 VSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL--ESALKDLKIV 371

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.8 bits (218), Expect = 6e-20
 Identities = 39/300 (13%), Positives = 97/300 (32%), Gaps = 29/300 (9%)

Query: 499 EVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFR 558
            + C    +  V C  +  D + + S   D  + +W+ +TL+ +     H   V  +++ 
Sbjct: 7   RIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD 64

Query: 559 PNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQ 618
                     +  S             +          ++        +   C  D  I 
Sbjct: 65  ER------VIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIA 118

Query: 619 YWSINPFLCTHITKGG----TAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHA 674
            W +       + +       A          +++A+ D+ + +++  T     +L GH 
Sbjct: 119 VWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHK 178

Query: 675 ELVNYICWDTNGDYLASVSQ-NLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVV 733
             +  + +      + S S  N +++W +  G C++     G++            ++  
Sbjct: 179 RGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLR--VLEGHEELVRCIRFDNKRIVSG 234

Query: 734 GGISSLELWNMAENKSM----------TIAAHENIISALAQSPVTGMVASASHDSSVKLW 783
                +++W++                T+  H   +  L        + S+SHD ++ +W
Sbjct: 235 AYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE--FQIVSSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (110), Expect = 4e-06
 Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 11/75 (14%)

Query: 512 CCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPED---------HKSVVTDVRFRPNSS 562
                 D K + S  +D K+ +W++        P           H   V  ++F  +  
Sbjct: 221 VRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEF 278

Query: 563 QLATASVDKSVRLWD 577
           Q+ ++S D ++ +WD
Sbjct: 279 QIVSSSHDDTILIWD 293

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 81.0 bits (198), Expect = 5e-17
 Identities = 39/307 (12%), Positives = 79/307 (25%), Gaps = 32/307 (10%)

Query: 510 VTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPE---DHKSVVTDVRFRPNSSQLAT 566
           ++         LL  +  D  + ++  D             +K  +    F  N+     
Sbjct: 14  ISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIY 73

Query: 567 ASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYW------ 620
               +   L      +   QA T + + +          D       D  I+        
Sbjct: 74  VGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYG 133

Query: 621 ---SINPFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHA--- 674
                   L ++ TK             +L+   ++  V  F +      +     +   
Sbjct: 134 DGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLK 193

Query: 675 -ELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSN---------------GNQ 717
            ++ +        +  A  S +  V V            S                    
Sbjct: 194 YQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYP 253

Query: 718 FHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHD 777
            +S  F P +  L   G    +  WN+   K +   A  N  S +  +    ++  A+ D
Sbjct: 254 VNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSD 313

Query: 778 SSVKLWK 784
            + K   
Sbjct: 314 DTFKTNA 320

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.2 bits (162), Expect = 2e-12
 Identities = 29/281 (10%), Positives = 71/281 (25%), Gaps = 36/281 (12%)

Query: 536 MDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAAN--PNFCSQAYTGHSS 593
           M  +Q E  P+D    ++D++  P+ S L   S D S+ ++       N        +  
Sbjct: 1   MQIVQIEQAPKD---YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKH 57

Query: 594 PIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAASD 653
           P++  +F               EI    +             A +               
Sbjct: 58  PLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIA 117

Query: 654 KVVSIFDIETDRQTHSLQGHA-----------ELVNYICWDTNGDYLASVSQNLVKVWSM 702
                     D + +     A           +   +     +   +  ++ + V+ + +
Sbjct: 118 ASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRL 177

Query: 703 ASGECIQELSSNGNQFHSCVFHPSYS-------------TLLVVGGISSLELWNMAENKS 749
              E            +                       + V       + +N ++  +
Sbjct: 178 PLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFA 237

Query: 750 MTIA-------AHENIISALAQSPVTGMVASASHDSSVKLW 783
                           ++++  SP    + +A  D  +  W
Sbjct: 238 FRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCW 278

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.9 bits (125), Expect = 8e-08
 Identities = 17/89 (19%), Positives = 31/89 (34%), Gaps = 6/89 (6%)

Query: 511 TCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVD 570
               FS   K L ++G D  +  WN+ T +              V+   + + L  A+ D
Sbjct: 255 NSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSV-VKIACSDNILCLATSD 313

Query: 571 KSVRLWDAANPNFCSQAYTGHSSPIMSLD 599
            + +   A       Q    ++S I  + 
Sbjct: 314 DTFKTNAA-----IDQTIELNASSIYIIF 337

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 78.2 bits (191), Expect = 4e-16
 Identities = 22/315 (6%), Positives = 80/315 (25%), Gaps = 46/315 (14%)

Query: 515 FSSDGKLLASSGHDRKVVLWNMDTLQTEST-PEDHKSVVTDVRFRPNSSQL-ATASVDKS 572
             +  + +  + +   + + ++ +     +     K         P++       +    
Sbjct: 4   LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD 63

Query: 573 VRLWDAANPN-----FCSQAYTGHSSPIMSLDFHPKKTDLFC-----------FCDNDNE 616
           +   D            S         + S    P   +++            +      
Sbjct: 64  IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPR 123

Query: 617 IQYWSINPFLCTHITKGGTA--QVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGH- 673
           ++ +S    L     +      QV             +   +   D++T + T +L    
Sbjct: 124 LEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRN 183

Query: 674 ------------------------AELVNYICWDTNGDYLASVS-QNLVKVWSMASGECI 708
                                   + L     +  +    A+           + +G+  
Sbjct: 184 WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTH 243

Query: 709 QELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIAAHENIISALAQSPVT 768
            +  ++  + +            + G ++ L  +++ + K +  A  ++    +A     
Sbjct: 244 TQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKG 303

Query: 769 GMVASASHDSSVKLW 783
             +      + + ++
Sbjct: 304 DKLYLGGTFNDLAVF 318

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 58.6 bits (140), Expect = 1e-09
 Identities = 28/281 (9%), Positives = 63/281 (22%), Gaps = 11/281 (3%)

Query: 473 DGRELYGTLKHSPE----HQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHD 528
           D R  Y    H  +            F              +     S DGK + ++ + 
Sbjct: 50  DNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNP 109

Query: 529 RKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAY 588
            + +  +                +     R          +  +             +  
Sbjct: 110 TQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMD 169

Query: 589 TGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLL 648
                  ++L         +   D      + S       H         RF+       
Sbjct: 170 VKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQS-----PRHEFSMLYTIARFKDDKQDPA 224

Query: 649 AAASDKVVSIFDIETDRQTHSLQG-HAELVNYICWDTNGDYLASVSQNLVKVWSMASGEC 707
            A         D++T +          EL                  N +  + +   + 
Sbjct: 225 TADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKL 284

Query: 708 IQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENK 748
           I+  +   + ++   F      L + G  + L ++N    +
Sbjct: 285 IKAANL-DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLE 324

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 51.3 bits (121), Expect = 2e-07
 Identities = 24/226 (10%), Positives = 54/226 (23%), Gaps = 65/226 (28%)

Query: 510 VTCCHFSSDGKLLASSGHDRKVVLWNMDTLQT----------------------ESTPED 547
           V     + DG L  +     K+ +                              +S   +
Sbjct: 147 VYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHE 206

Query: 548 HKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDL 607
              + T  RF+ +    ATA +       D       +Q +   +    +    PK    
Sbjct: 207 FSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPK---- 262

Query: 608 FCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQT 667
                                                           ++ +D++  +  
Sbjct: 263 -------------------------------------DPNQIYGVLNRLAKYDLKQRKLI 285

Query: 668 HSLQGHAELVNYICWDTNGDYLASVSQ-NLVKVWSMASGECIQELS 712
            +          + +D  GD L      N + V++  + E ++ + 
Sbjct: 286 KAA-NLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 330

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 38.6 bits (88), Expect = 0.002
 Identities = 13/51 (25%), Positives = 17/51 (33%), Gaps = 3/51 (5%)

Query: 510 VTCCHFSSDGKLLASSGHDRKVVLWNMDTLQ---TESTPEDHKSVVTDVRF 557
             C  F   G  L   G    + ++N DTL+       P    S  T   F
Sbjct: 294 YYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGDMSTTTPQVF 344

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 75.3 bits (183), Expect = 2e-15
 Identities = 29/291 (9%), Positives = 80/291 (27%), Gaps = 17/291 (5%)

Query: 509 KVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATAS 568
                  +  G  +    +   V    + +L       +H    T  +  P+    A+  
Sbjct: 19  TAVVLGNTPAGDKIQY-CNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGD 77

Query: 569 VDKSVRLWDAANPNFCSQA-YTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLC 627
           V  +VR+WD        +      S P+  + +  +   +    +      +  +     
Sbjct: 78  VHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT 137

Query: 628 THITKGGTAQVRFQPRIG------QLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYIC 681
           ++    G A+               +  +  + V          ++   +    + +   
Sbjct: 138 SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRY 197

Query: 682 WDTNGDYLASVSQNLVKVWSMASGECIQE-------LSSNGNQFHSCVFHPSYSTLLVVG 734
                 + ++     + +++   G              ++        + P  + +    
Sbjct: 198 NPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASAS 257

Query: 735 GISSLELWNMAENKSM-TIAAHENIIS-ALAQSPVTGMVASASHDSSVKLW 783
              ++++WN+A  K   TI     I    L        + S S +  +   
Sbjct: 258 ADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV 308

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 53.8 bits (127), Expect = 3e-08
 Identities = 15/82 (18%), Positives = 32/82 (39%), Gaps = 1/82 (1%)

Query: 497 FCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSV-VTDV 555
             +     + +  V    +S DG  +AS+  D+ + +WN+ TL+ E T      +    +
Sbjct: 228 EDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQL 287

Query: 556 RFRPNSSQLATASVDKSVRLWD 577
                   L + S +  +   +
Sbjct: 288 GIIWTKQALVSISANGFINFVN 309

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 75.0 bits (182), Expect = 3e-15
 Identities = 44/286 (15%), Positives = 89/286 (31%), Gaps = 11/286 (3%)

Query: 507 NSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTEST-PEDHKSVVTDVRFRPNSSQLA 565
           N  +T    S+DGK L S+  +  +  W++ T  +    P+ H +++T ++       L 
Sbjct: 12  NKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK-GDLF 70

Query: 566 TASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPF 625
           T S D  +++  A      S     +      L                  I  +S    
Sbjct: 71  TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKL 130

Query: 626 LCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTN 685
               I+   +       +    +     KV                 H   +  + +  N
Sbjct: 131 TEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNN 190

Query: 686 GDYLASVS----QNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLEL 741
           G +L +           V +          + +  +     + P    L      +S+ +
Sbjct: 191 GAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIV 250

Query: 742 WNMAENKSMTI----AAHENIISALAQSPVTGMVASASHDSSVKLW 783
           WNM +     I    A   + ++++        + SA  DS++K W
Sbjct: 251 WNMNKPSDHPIIIKGAHAMSSVNSVI-WLNETTIVSAGQDSNIKFW 295

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 48.1 bits (112), Expect = 2e-06
 Identities = 20/98 (20%), Positives = 34/98 (34%), Gaps = 4/98 (4%)

Query: 483 HSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDT---L 539
                       F            +KV C  +S D   LA+   D  V++WNM+     
Sbjct: 200 SRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDH 259

Query: 540 QTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWD 577
                     S V  V +  N + + +A  D +++ W+
Sbjct: 260 PIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 48.1 bits (112), Expect = 2e-06
 Identities = 11/82 (13%), Positives = 25/82 (30%), Gaps = 1/82 (1%)

Query: 668 HSLQGHAELVNYICWDTNGDYLASVSQ-NLVKVWSMASGECIQELSSNGNQFHSCVFHPS 726
               GH + +  +    +G  L S      +  W +++G   +          + +   S
Sbjct: 6   QVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTS 65

Query: 727 YSTLLVVGGISSLELWNMAENK 748
              L  V     L++     + 
Sbjct: 66  KGDLFTVSWDDHLKVVPAGGSG 87

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.0 bits (86), Expect = 0.003
 Identities = 26/145 (17%), Positives = 53/145 (36%), Gaps = 5/145 (3%)

Query: 483 HSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTE 542
                 K      +  +     +  + V   +  +       S       + N   L   
Sbjct: 158 SKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHT 217

Query: 543 STPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYT--GHSSPIMSLDF 600
           ++   H + V  V + P++ +LAT S+D SV +W+   P+            S + S+ +
Sbjct: 218 NSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW 277

Query: 601 HPKKTDLFCFCDNDNEIQYWSINPF 625
             + T        D+ I++W++ PF
Sbjct: 278 LNETT--IVSAGQDSNIKFWNV-PF 299

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.8 bits (174), Expect = 5e-14
 Identities = 33/341 (9%), Positives = 83/341 (24%), Gaps = 66/341 (19%)

Query: 507 NSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNS----- 561
            + V  C    +   + +   D+ + +++    +       H   V  +++         
Sbjct: 12  MTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSG 70

Query: 562 --------------------------------------SQLATASVDKSVRLWDAA---- 579
                                                   + T S D ++ +W       
Sbjct: 71  STDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESS 130

Query: 580 ---------------NPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINP 624
                           P             + S+       ++      DN +  W +  
Sbjct: 131 VPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQ 190

Query: 625 FLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDT 684
             C +I  G T ++       +     S  + +   I        +         +    
Sbjct: 191 MKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLR 250

Query: 685 NGDYLASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNM 744
             D     +     +    + +  ++ S +     +         +LV G  +   ++N+
Sbjct: 251 LSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNL 310

Query: 745 AENKSM--TIAAHENIISALAQSPVTGMVASASHDSSVKLW 783
              K +   I    + I ++       +VA+   D    L 
Sbjct: 311 RSGKLVHANILKDADQIWSVNFKG-KTLVAAVEKDGQSFLE 350

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.1 bits (115), Expect = 1e-06
 Identities = 11/131 (8%), Positives = 34/131 (25%), Gaps = 3/131 (2%)

Query: 493 KGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVV 552
           + +       + +                   S      +        +      H ++ 
Sbjct: 226 RIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLS 285

Query: 553 TDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCD 612
               F  + + L + S +    +++  +           +  I S++F  K   L    +
Sbjct: 286 AITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT--LVAAVE 342

Query: 613 NDNEIQYWSIN 623
            D +     ++
Sbjct: 343 KDGQSFLEILD 353

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.0 bits (112), Expect = 2e-06
 Identities = 35/265 (13%), Positives = 82/265 (30%), Gaps = 8/265 (3%)

Query: 483 HSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTE 542
           H+   +      +   +     SR++ +       +  +          ++++       
Sbjct: 93  HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPY 152

Query: 543 STPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHP 602
                   + +      + + + + S D ++ +WD A                     + 
Sbjct: 153 FVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYS--TIYD 210

Query: 603 KKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIE 662
            +         D  I+ W +      +  +G TA V       + L +A+          
Sbjct: 211 HERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDA 270

Query: 663 TDRQTHSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQ-ELSSNGNQFHSC 721
            D        H  L     +  + + L S S+N   ++++ SG+ +   +  + +Q  S 
Sbjct: 271 NDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSV 330

Query: 722 VFHPSYSTLLVVG---GISSLELWN 743
            F     TL+      G S LE+ +
Sbjct: 331 NFKG--KTLVAAVEKDGQSFLEILD 353

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 69.1 bits (167), Expect = 5e-13
 Identities = 24/302 (7%), Positives = 63/302 (20%), Gaps = 29/302 (9%)

Query: 508 SKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATA 567
            ++       D K+    G      L   D    ++   +             + + A  
Sbjct: 43  LRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVV 102

Query: 568 SVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLC 627
           + D+   +         +       + I           +       +      +   + 
Sbjct: 103 ANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIH 162

Query: 628 THITKGGTAQVRFQPR----------IGQLLAAAS-DKVVSIFDIET-------DRQTHS 669
            +  +G                      + L   S   +    D            +   
Sbjct: 163 VYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFV 222

Query: 670 LQGHAELVNYICWDTNGDYLASVSQNLVKVW--------SMASGECIQELSSNGNQFHSC 721
           +       N            +   +L  ++               I  L S+   +   
Sbjct: 223 IPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVP 282

Query: 722 VFHPSYSTLLVVGGISSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHDSSVK 781
           V     +          L  +++   K   +  +   ++ L  S     V     D  + 
Sbjct: 283 VHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNN---LTDLRLSADRKTVMVRKDDGKIY 339

Query: 782 LW 783
            +
Sbjct: 340 TF 341

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 67.2 bits (162), Expect = 2e-12
 Identities = 23/299 (7%), Positives = 57/299 (19%), Gaps = 35/299 (11%)

Query: 515 FS-SDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVD--K 571
           FS  DG L+A      +  + ++        P      +  VR   ++            
Sbjct: 10  FSPLDGDLIAFVSRG-QAFIQDVSGTYVLKVP--EPLRIRYVRRGGDTKVAFIHGTREGD 66

Query: 572 SVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHIT 631
            + ++D       ++ +  +   + ++             D    +              
Sbjct: 67  FLGIYDYRTGK--AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER 124

Query: 632 KGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTH-----------SLQGHAELVNYI 680
                   F         A    +          Q             +           
Sbjct: 125 SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAP 184

Query: 681 CWDTNGDYLASVSQ-NLVKVWSMASGEC-------IQELSSNGNQFHSCVFHPSYSTLLV 732
            +D +   L  +S  +L                     +       +     P   T   
Sbjct: 185 AFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEA 244

Query: 733 VGGISSLELWNMAENKS--------MTIAAHENIISALAQSPVTGMVASASHDSSVKLW 783
                +      +            + + +   I S             A     +  +
Sbjct: 245 GEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKY 303

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 66.0 bits (159), Expect = 5e-12
 Identities = 16/246 (6%), Positives = 53/246 (21%), Gaps = 21/246 (8%)

Query: 483 HSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTE 542
                +    +      +      ++     +              + + +++M+  +  
Sbjct: 113 DLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIF 172

Query: 543 STPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCS------QAYTGHSSPIM 596
           +   ++        F  +S  L   S        D    NF                   
Sbjct: 173 AATTENSHDYAP-AFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPN 231

Query: 597 SLDFHPKKTDLFCFCDNDNEIQYWSINPFL------CTHITKGGTAQVRFQ---PRIGQL 647
                P+         + N++   S    +           +                  
Sbjct: 232 PTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYY 291

Query: 648 LAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQ-NLVKVWSMASGE 706
             A    V+  +D++T      +      +  +    +   +        +  + +   E
Sbjct: 292 QGAPEKGVLLKYDVKT----RKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPE 347

Query: 707 CIQELS 712
             + + 
Sbjct: 348 DERTVE 353

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.6 bits (163), Expect = 1e-12
 Identities = 32/311 (10%), Positives = 79/311 (25%), Gaps = 30/311 (9%)

Query: 504 RSRNSKVTCCHFSSDGKLLAS-SGHDRKVVLWNMDTLQTESTPE---DHKSVVTDVRFRP 559
            ++ +  T   +      +A   G    V   +    +     +      SVVT V+F P
Sbjct: 14  STQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSP 73

Query: 560 --NSSQLATASVDKSVRLWDAANPNFC-------SQAYTGHSSPIMSLDFHPK-KTDLFC 609
              S  L +      V +W                  +   + PI  + +  + +     
Sbjct: 74  IKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVV 133

Query: 610 FCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAAS------------DKVVS 657
               DN   + S +         G + ++            +                  
Sbjct: 134 GEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK 193

Query: 658 IFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELSSNGNQ 717
               +               +    +      +    +     S    + I++       
Sbjct: 194 FSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQG 253

Query: 718 FHSCVFHPSYSTLLVVGGISSLELWNMAENK---SMTIAAHENIISALAQSPV-TGMVAS 773
               +          VG  +++ +W++  +K     T+   +     +       G + S
Sbjct: 254 GIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIIS 313

Query: 774 ASHDSSVKLWK 784
            S D ++  ++
Sbjct: 314 LSLDGTLNFYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.7 bits (132), Expect = 8e-09
 Identities = 32/264 (12%), Positives = 73/264 (27%), Gaps = 25/264 (9%)

Query: 506 RNSKVTCCHFS--SDGKLLASSGHDRKVVLWNMDT--------LQTESTPEDHKSVVTDV 555
            +S VT   FS     + L S     KV++W            +  +S  +     ++D+
Sbjct: 62  GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDI 121

Query: 556 RFRPNSSQLATASV--DKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDN 613
            +     +L       D         + N   +                +        D+
Sbjct: 122 SWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDD 181

Query: 614 DNEIQYWSINPFLCTHIT-----KGGTAQVRFQPRIGQLLAAASDKVVSIF----DIETD 664
            + + Y                       V F P  G+ +                 E  
Sbjct: 182 GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFL 241

Query: 665 RQTHSLQGHAELVNYICWDTNGDYLASVSQ-NLVKVWSMASGECIQELSSNGNQFHS--- 720
           +     Q   +   +     +    A+V     ++VW + + +C+Q+ + +  Q  +   
Sbjct: 242 KYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQV 301

Query: 721 CVFHPSYSTLLVVGGISSLELWNM 744
            V       ++ +    +L  + +
Sbjct: 302 GVVATGNGRIISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.4 bits (113), Expect = 2e-06
 Identities = 9/86 (10%), Positives = 30/86 (34%), Gaps = 3/86 (3%)

Query: 495 FTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTD 554
                +   +             D +  A+ G D  + +W++ T +        K  + +
Sbjct: 239 EFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGN 298

Query: 555 VRFR---PNSSQLATASVDKSVRLWD 577
            +       + ++ + S+D ++  ++
Sbjct: 299 QQVGVVATGNGRIISLSLDGTLNFYE 324

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.8 bits (161), Expect = 3e-12
 Identities = 32/321 (9%), Positives = 85/321 (26%), Gaps = 48/321 (14%)

Query: 500 VGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPED------HKSVVT 553
               ++ ++ +             S   D  + +W+   L  E+  +       HKS + 
Sbjct: 7   ANAGKAHDADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLH 64

Query: 554 DVRFRPNSSQ-------LATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTD 606
            V       +       +AT S    +  +     +  ++        ++  D       
Sbjct: 65  HVDVLQAIERDAFELCLVATTSFSGDLLFYRITRED-ETKKVIFEKLDLLDSDMKKHSFW 123

Query: 607 LFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQ 666
              +  +++ +    +       +                   + S  +     +E    
Sbjct: 124 ALKWGASNDRLLSHRL-------VATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGT 176

Query: 667 THSLQGHAELVNYICWDTNGDYLASVSQN---LVKVWSMASGECIQELSSNGNQFHSCVF 723
             S    ++    +     G  +A+   N    +   S        E   +     + + 
Sbjct: 177 VESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIR 235

Query: 724 HPSYSTLLVVGGISS---------------------LELWNMAENKSMTIAAHENIISAL 762
              +S    +  I+                      L +   +   S+   AH + + +L
Sbjct: 236 SVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSL 295

Query: 763 AQSPVTGMVASASHDSSVKLW 783
           + +     + SA  D  ++ W
Sbjct: 296 SFNDSGETLCSAGWDGKLRFW 316

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.0 bits (159), Expect = 6e-12
 Identities = 35/343 (10%), Positives = 89/343 (25%), Gaps = 72/343 (20%)

Query: 501 GCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPN 560
             +   +        + +  L+A++     ++ + +            K  + D   + +
Sbjct: 61  SGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKH 120

Query: 561 S---------------SQLATASVDKSVRLWDAANPNFCSQAYTGHSSP----------- 594
           S                +L    V  +  +W        S + T + SP           
Sbjct: 121 SFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESP 180

Query: 595 ------IMSLDFHPKKT------DLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQP 642
                   S+D   +        +        + ++         + I    + +     
Sbjct: 181 MTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS 240

Query: 643 RIGQLLAAASDKVVSIFDIETDRQTH-----------------SLQGHAELVNYICWDTN 685
             G LLA A D          + +                       H+  V  + ++ +
Sbjct: 241 PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDS 300

Query: 686 GDYLASVSQ-NLVKVWSMASGECIQELSSNGNQFHSCVFHPSYS---TLLVVGGISSLEL 741
           G+ L S      ++ W + + E I  L+ + +         +       L   G+  ++ 
Sbjct: 301 GETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKF 360

Query: 742 WNMAENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKLWK 784
                   M              + +   +     D S++ ++
Sbjct: 361 LKKGWRSGMG-------------ADLNESLCCVCLDRSIRWFR 390

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.2 bits (136), Expect = 4e-09
 Identities = 33/241 (13%), Positives = 69/241 (28%), Gaps = 38/241 (15%)

Query: 496 TFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWN------MDTLQTESTPEDHK 549
               V    + +   T    S  G L+A+  ++  V +        +   +++ +  ++ 
Sbjct: 173 LQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNS 231

Query: 550 SVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFC 609
           + +  V+F P  S LA A    S          F  +  +                    
Sbjct: 232 NSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLS-------VPTHSSQASLG 284

Query: 610 FCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHS 669
              + + +   S N    T  + G                   D  +  +D++T  +  +
Sbjct: 285 EFAHSSWVMSLSFNDSGETLCSAG------------------WDGKLRFWDVKTKERITT 326

Query: 670 LQGHAELVNY----ICWDTNGDYLASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHP 725
           L  H + +      +  D +GD LA     +  V  +  G      +             
Sbjct: 327 LNMHCDDIEIEEDILAVDEHGDSLAEPG--VFDVKFLKKGWRSGMGADLNESLCCVCLDR 384

Query: 726 S 726
           S
Sbjct: 385 S 385

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.5 bits (103), Expect = 4e-05
 Identities = 19/124 (15%), Positives = 39/124 (31%), Gaps = 5/124 (4%)

Query: 458 SIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSS 517
           S   ++ ++       G       +             +        + +S V    F+ 
Sbjct: 240 SPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND 299

Query: 518 DGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVV----TDVRFRPNSSQLATASVDKSV 573
            G+ L S+G D K+  W++ T +  +T   H   +      +    +   LA   V   V
Sbjct: 300 SGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVF-DV 358

Query: 574 RLWD 577
           +   
Sbjct: 359 KFLK 362

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.1 bits (146), Expect = 1e-10
 Identities = 29/283 (10%), Positives = 77/283 (27%), Gaps = 15/283 (5%)

Query: 507 NSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLAT 566
           N  +T    +     L S  +D +++ W+  +       +DH +++  +         + 
Sbjct: 13  NKGITALTVNP----LISGSYDGRIMEWSSSS-----MHQDHSNLIVSLDNSKAQEYSSI 63

Query: 567 ASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFL 626
           +  D         +           ++   +         L       + I+   +N   
Sbjct: 64  SWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPG 123

Query: 627 CTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHS---LQGHAELVNYICWD 683
                      V  +      +   SD  VS       R   S   +      +      
Sbjct: 124 SAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVM 183

Query: 684 TNGDYLASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWN 743
                    S+ +           I  +S    +  +         +      +++ +++
Sbjct: 184 GKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYS 243

Query: 744 MAENKS--MTIAAHENIISALAQSPVTGMVASASHDSSVKLWK 784
           +         + AH++ ++ L        + S+  D+ +K W 
Sbjct: 244 VKRPMKIIKALNAHKDGVNNLLWET-PSTLVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.7 bits (132), Expect = 6e-09
 Identities = 29/241 (12%), Positives = 73/241 (30%), Gaps = 15/241 (6%)

Query: 548 HKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDL 607
           H   +T +      + L + S D  +  W +++       +  HS+ I+SLD    +   
Sbjct: 12  HNKGITALTV----NPLISGSYDGRIMEWSSSS------MHQDHSNLIVSLDNSKAQEYS 61

Query: 608 FC----FCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIET 663
                     +   ++   +          G   V        +L + +  ++    + +
Sbjct: 62  SISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNS 121

Query: 664 DRQTHSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGE-CIQELSSNGNQFHSCV 722
                SL  +   V     +T   +  S  +    + +    +     +S +     +  
Sbjct: 122 PGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGD 181

Query: 723 FHPSYSTLLVVGGISSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKL 782
                    +         W    +K   I+       A  +     +VA+ S D+++ +
Sbjct: 182 VMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFI 241

Query: 783 W 783
           +
Sbjct: 242 Y 242

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.1 bits (120), Expect = 2e-07
 Identities = 29/253 (11%), Positives = 74/253 (29%), Gaps = 14/253 (5%)

Query: 381 NSSSGAANSTGTGNTVGPSPNSPPSTHTPGDGITTPTSMQHVNNMHKTLMMNGSEGTGSL 440
           +SSS   + +    ++  S     S+ +  D +      +H       +    ++G  ++
Sbjct: 37  SSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAV 96

Query: 441 ASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEV 500
            +  + L  +  F         + S  S                    +           
Sbjct: 97  LTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNY-VAVGLEEGNTIQVFKLSDLEVSF 155

Query: 501 GCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQT-----------ESTPEDHK 549
                  +K +    S     +A+     K++L+++ + +             +      
Sbjct: 156 DLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKP 215

Query: 550 SVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFC 609
           +             +AT S+D ++ ++    P    +A   H   + +L +    T    
Sbjct: 216 AEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST--LV 273

Query: 610 FCDNDNEIQYWSI 622
               D  I+ W++
Sbjct: 274 SSGADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.9 bits (91), Expect = 7e-04
 Identities = 20/230 (8%), Positives = 54/230 (23%), Gaps = 1/230 (0%)

Query: 473 DGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVV 532
             +E               TK     +     + N   T    + D  L+  S     + 
Sbjct: 56  KAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIK 115

Query: 533 LWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHS 592
              +++  +  +   +   V             +                         +
Sbjct: 116 SVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSET 175

Query: 593 SPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAAS 652
                              +       +  +                 +     +   + 
Sbjct: 176 YIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSL 235

Query: 653 DKVVSIFDIETDRQ-THSLQGHAELVNYICWDTNGDYLASVSQNLVKVWS 701
           D  + I+ ++   +   +L  H + VN + W+T    ++S +   +K W+
Sbjct: 236 DTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWN 285

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 56.0 bits (134), Expect = 1e-08
 Identities = 32/282 (11%), Positives = 74/282 (26%), Gaps = 28/282 (9%)

Query: 528 DRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCS-- 585
             ++ L +  T + ++  +   +V    R   +   L     D  V + D       +  
Sbjct: 41  AGQIALIDGSTYEIKTVLDTGYAVH-ISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVA 99

Query: 586 --QAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQ-- 641
             +  +   S   S     +            +             I          Q  
Sbjct: 100 EIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEY 159

Query: 642 ---PRIGQLLAAASDKV----------VSIFDIETDRQTHSLQGHAELVNY-ICWDTNGD 687
              PR+  +LA+               + + D        + +  AE   +    D +  
Sbjct: 160 HPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHR 219

Query: 688 YLASVSQNLVKV--WSMASGECIQELSSNGNQFHSC----VFHPSYSTLLVVGGISSLEL 741
           Y  + +    K+       G+ +    + G   H        HP++  +     +   + 
Sbjct: 220 YFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGD-DS 278

Query: 742 WNMAENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKLW 783
             +          +   I     +   G +   +H +S  L+
Sbjct: 279 VALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLY 320

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 55.2 bits (131), Expect = 1e-08
 Identities = 28/274 (10%), Positives = 67/274 (24%), Gaps = 42/274 (15%)

Query: 515 FSSDGK-LLASSGHDRKVVLWNMDTLQ-----TESTPEDHKSVVTDVRFRPNSSQLATAS 568
            +  G+   A+      +V  ++ T +       STPE+    +      P+   LA   
Sbjct: 41  VAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYE 100

Query: 569 VDKSVRLWDAANPNFCSQAYTG----------HSSPIMSLDFHPKKTDLFCFCDNDNEIQ 618
               + L            Y                I  L +    + L+    + + + 
Sbjct: 101 SPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMD 160

Query: 619 YWSINPFLC-----------------------THITKGGTAQVRFQPRIGQLLAAASDKV 655
             +                                    T     +  I      A    
Sbjct: 161 PEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTG 220

Query: 656 VSIFDIETDRQTH-SLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELSSN 714
           +   D+ET       ++           +             ++ + +     I+ +   
Sbjct: 221 LLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNV-LESFDLEKNASIKRVP-L 278

Query: 715 GNQFHSCVFHPSYSTLLVVGGISSLELWNMAENK 748
            + ++S       ST+ + G +  L  ++    +
Sbjct: 279 PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE 312

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 50.6 bits (119), Expect = 4e-07
 Identities = 21/196 (10%), Positives = 44/196 (22%), Gaps = 26/196 (13%)

Query: 499 EVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTE---------------- 542
                     ++T   ++ DG  L   G D  V+     TL  +                
Sbjct: 126 SRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDV 185

Query: 543 -----STPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMS 597
                               R +       +    +   D        +          S
Sbjct: 186 LAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFS 245

Query: 598 LDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTA--QVRFQPRIGQLLAAASDKV 655
              +P KT  F      N ++ + +             +   V        +    +   
Sbjct: 246 TAVNPAKTRAFGA---YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGD 302

Query: 656 VSIFDIETDRQTHSLQ 671
           ++ +D ET  +   + 
Sbjct: 303 LAAYDAETLEKKGQVD 318

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 43.6 bits (101), Expect = 6e-05
 Identities = 8/83 (9%), Positives = 22/83 (26%), Gaps = 1/83 (1%)

Query: 498 CEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRF 557
            E+     R   V     + +     + G    +  ++++   +             V  
Sbjct: 229 GEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRV-PLPHSYYSVNV 287

Query: 558 RPNSSQLATASVDKSVRLWDAAN 580
             + S +        +  +DA  
Sbjct: 288 STDGSTVWLGGALGDLAAYDAET 310

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.2 bits (92), Expect = 7e-04
 Identities = 16/224 (7%), Positives = 45/224 (20%), Gaps = 7/224 (3%)

Query: 564 LATASVDKSVRLWDAANPNFCSQ-AYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSI 622
           +   +    + + D                   M     P     +   +    +    +
Sbjct: 4   ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDL 63

Query: 623 NPFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICW 682
                       T + R +   G   AA S    ++   E+  +        +      +
Sbjct: 64  VTGETLGRIDLSTPEERVKSLFG---AALSPDGKTLAIYESPVRLELTHFEVQPTRVALY 120

Query: 683 DTNGDYLASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELW 742
           D          +   ++  +A      +L   G   H                    E +
Sbjct: 121 DAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETY 180

Query: 743 NMAENKSMTIAA---HENIISALAQSPVTGMVASASHDSSVKLW 783
              +  ++                           ++ + +   
Sbjct: 181 AQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTM 224

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.8 bits (91), Expect = 8e-04
 Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 3/50 (6%)

Query: 510 VTCCHFSSDGKLLASSGHDRKVVLWNMDTLQ---TESTPEDHKSVVTDVR 556
               + S+DG  +   G    +  ++ +TL+       P +    +  VR
Sbjct: 282 YYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSLASVR 331

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 53.3 bits (126), Expect = 5e-08
 Identities = 21/230 (9%), Positives = 57/230 (24%), Gaps = 29/230 (12%)

Query: 501 GCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPN 560
                  +  T      DG L   +               TE    + + ++    +   
Sbjct: 150 CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEI----THTEVFHPEDEFLINHPAYSQK 205

Query: 561 SSQLATASVDKSVRLWDAANPN-FCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQY 619
           + +L   +    +   D ++ +     A    +    +  + P       +    + I  
Sbjct: 206 AGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYL 265

Query: 620 WSINPFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNY 679
                                     +     + + V + D +T  +    +   E ++ 
Sbjct: 266 LVDQR--------------------DEWRHKTASRFVVVLDAKTGERLAKFEMGHE-IDS 304

Query: 680 ICWDTNGDYLASVS---QNLVKVWSMASGECIQELSSNGNQFHSCVFHPS 726
           I    +   L          + +    SGE ++ ++  G+          
Sbjct: 305 INVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADM 354

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 45.7 bits (107), Expect = 2e-05
 Identities = 28/283 (9%), Positives = 67/283 (23%), Gaps = 28/283 (9%)

Query: 515 FSSDGKLLASSGHDRKVVLWNMDTLQTESTPE-----DHKSVVTDVRFRPNSSQLATASV 569
            S+ G+ L   G D ++ + ++   +     E     + +SV +              + 
Sbjct: 69  MSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAY 128

Query: 570 DKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTH 629
                           Q  +     + +  +HP+             I     +P    +
Sbjct: 129 WPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPE--------PRVAAIIASHEHPEFIVN 180

Query: 630 ITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDR--QTHSLQGHAELVNYICWDTNGD 687
           + + G   +     I  L   +      + D   D   +      +      +    +  
Sbjct: 181 VKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRR 240

Query: 688 YLASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAEN 747
             A V           +                   H    ++ ++G          A  
Sbjct: 241 LSALVDVGKTPHPGRGANFVHP-----KYGPVWSTSHLGDGSISLIGTDPKNHPQY-AWK 294

Query: 748 KSMTIAAHENIISALAQSPVTGMVA-------SASHDSSVKLW 783
           K   +         +   P +  +         A    SV ++
Sbjct: 295 KVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVF 337

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.7 bits (94), Expect = 6e-04
 Identities = 25/321 (7%), Positives = 69/321 (21%), Gaps = 57/321 (17%)

Query: 515 FSSDGK-----LLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASV 569
             +  +     L A      +  +       T          ++      + S  A AS 
Sbjct: 27  PGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAF--LSLAVAGHSGSDFALAST 84

Query: 570 ----------DKSVRLWDAAN---------PNFCSQAYTGHSSPIMSLDFHPKKTDLFCF 610
                        V ++D            P+    +       I           L  F
Sbjct: 85  SFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIG---NCASSACLLFF 141

Query: 611 CDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETD------ 664
               +     S+       +TK  +               +    ++  D+         
Sbjct: 142 LFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGI 201

Query: 665 RQTHSLQGHAELVNYICWDTNGDYLAS-VSQNLVKVWSMASGECIQELSSNGNQFHSCVF 723
                             +  G  + +  S  L      A       +  N +   +  F
Sbjct: 202 VGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNF 261

Query: 724 HPSYSTLLVV-------------------GGISSLELWNMAENKSMTIAAHENIISALAQ 764
             +   ++                         +      +  ++    ++ +   A+  
Sbjct: 262 RSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIA 321

Query: 765 SP--VTGMVASASHDSSVKLW 783
           +    +   A+++    + ++
Sbjct: 322 AQDGASDNYANSAGTEVLDIY 342

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 40.2 bits (92), Expect = 7e-04
 Identities = 28/240 (11%), Positives = 57/240 (23%), Gaps = 7/240 (2%)

Query: 515 FSSDGK-LLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSV 573
            S DG  +  ++ H   V + +  T    +T     S               T     ++
Sbjct: 39  ISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTL 98

Query: 574 RLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKG 633
            + D  +        TG S   ++L    KK  +    D    +        + T     
Sbjct: 99  SVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGR 158

Query: 634 GTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVN----YICWDTNGDYL 689
               +   P   ++  A  D +                      +               
Sbjct: 159 SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTN 218

Query: 690 ASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGIS-SLELWNMAENK 748
                N V +    + +    +   G         P    + V      ++ + + A N 
Sbjct: 219 VDKYFNTVSMIDTGTNKITARIPV-GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNT 277

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	784
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.97
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.94
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.94
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.94
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.93
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.93
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.92
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.92
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.91
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.9
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.88
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.88
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.87
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.86
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.84
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.84
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.84
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.83
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.81
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.8
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.78
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.77
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.75
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.69
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.57
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.49
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.45
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.44
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.32
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.23
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.18
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.12
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.11
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.1
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.07
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.05
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.02
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.02
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.97
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.96
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.95
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.83
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.74
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.74
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.68
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.6
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.59
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.37
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.29
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.18
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.08
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.94
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.92
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.91
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.89
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.85
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.77
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	97.71
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.52
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.52
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.51
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.42
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.39
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.33
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.25
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.24
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.07
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.06
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	96.95
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.89
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.4
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	96.32
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.29
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.2
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	95.99
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	94.47
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	94.32
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	94.03
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	93.89
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	93.52
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	92.69
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	91.58
d1uuja_	76	Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-te	91.45
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	91.34
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	90.66
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	87.56
d1wp5a_	323	Topoisomerase IV subunit A, ParC, C-terminal domai	87.25
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	85.1

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=9.1e-39  Score=332.55  Aligned_cols=283  Identities=24%  Similarity=0.460  Sum_probs=261.6

Q ss_pred             EeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCC
Q 047260          500 VGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAA  579 (784)
Q Consensus       500 i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~  579 (784)
                      ..+|++|.+.|++|+|+|++++||||+.||+|+|||+.+++.+..+.+|...|.+++|++++.++++++.++.+.+|+..
T Consensus        10 ~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (317)
T d1vyhc1          10 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ   89 (317)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred             cEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccccccc
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEee---cCCeeEEEEecCCCEEEEEECCCcE
Q 047260          580 NPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHIT---KGGTAQVRFQPRIGQLLAAASDKVV  656 (784)
Q Consensus       580 ~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~---~~~v~~v~fsp~~~~Ll~~s~Dg~I  656 (784)
                      ... ....+.+|...+.++.|++++. .+++++.|+.+++||+++......+   ...+.+++|++++..|++++.|+.|
T Consensus        90 ~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v  167 (317)
T d1vyhc1          90 GFE-CIRTMHGHDHNVSSVSIMPNGD-HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV  167 (317)
T ss_dssp             SSC-EEECCCCCSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             ccc-cccccccccccceeeeccCCCc-eEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeE
Confidence            766 5666778999999999999987 6778899999999999987766554   4678899999999999999999999


Q ss_pred             EEEECCCCeEEEEEeCCCCCEEEEEEcCC--------------------CCEEEEEeCC-eEEEEeCCCCceEEEeccCC
Q 047260          657 SIFDIETDRQTHSLQGHAELVNYICWDTN--------------------GDYLASVSQN-LVKVWSMASGECIQELSSNG  715 (784)
Q Consensus       657 ~IwDl~t~~~i~~l~~h~~~V~sl~~spd--------------------g~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~  715 (784)
                      ++|++.+++.+..+.+|...+.++.|+|+                    +.++++++.+ .|++||+++++++.++.+|.
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~  247 (317)
T d1vyhc1         168 RVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHD  247 (317)
T ss_dssp             EEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCS
T ss_pred             EEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCC
Confidence            99999999999999999999999999875                    3467777755 99999999999999999999


Q ss_pred             CceEEEEEecCCCEEEEEECCCeEEEEECCCCceE-EecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          716 NQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       716 ~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      ..|.+++|+|++++|++++.||.|+|||+.+++.+ .+.+|.+.|++++|+|++++|++|+.||.|+|||
T Consensus       248 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         248 NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             CCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            99999999999999999999999999999998876 6778999999999999999999999999999998

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.8e-38  Score=336.93  Aligned_cols=284  Identities=14%  Similarity=0.235  Sum_probs=252.1

Q ss_pred             ceeEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcee-----eecCCCCCCeEEEEEccCCCEEEEEeCC
Q 047260          496 TFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTE-----STPEDHKSVVTDVRFRPNSSQLATASVD  570 (784)
Q Consensus       496 ~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~-----~~l~~h~~~It~i~fspdg~~Latgs~D  570 (784)
                      ....+.++ .|...|+|++|+|+|++||+|+ ||.|+|||+.+....     .....|.+.|++++|+|++++|++|+.|
T Consensus        41 ~~~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~d  118 (337)
T d1gxra_          41 HARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEA  118 (337)
T ss_dssp             EEEEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESS
T ss_pred             CceEEEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecc
Confidence            44566666 7999999999999999999987 899999999764322     2345799999999999999999999999


Q ss_pred             CeEEEEcCCCCc-ceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEee---cCCeeEEEEecCCCE
Q 047260          571 KSVRLWDAANPN-FCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHIT---KGGTAQVRFQPRIGQ  646 (784)
Q Consensus       571 g~I~IWdl~~~~-~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~---~~~v~~v~fsp~~~~  646 (784)
                      |.|++||+.... .....+..|...|.+++|+|++. ++++++.|+.|++||+++.++....   ...+.+++|++++..
T Consensus       119 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~  197 (337)
T d1gxra_         119 STLSIWDLAAPTPRIKAELTSSAPACYALAISPDSK-VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTK  197 (337)
T ss_dssp             SEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE
T ss_pred             cccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999987644 34556778999999999999876 7788999999999999988776554   367899999999999


Q ss_pred             EEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEec
Q 047260          647 LLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHP  725 (784)
Q Consensus       647 Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fsp  725 (784)
                      +++++.|+.|++||+++++.+..+. |...|.+++|+|++.+|++++.+ .|++||+++++.. ....|...|.+++|+|
T Consensus       198 ~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~i~~v~~s~  275 (337)
T d1gxra_         198 LWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAY  275 (337)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECT
T ss_pred             cccccccccccccccccceeecccc-cccceEEEEEcccccccceeccccccccccccccccc-cccccccccceEEECC
Confidence            9999999999999999999887775 88999999999999999998865 9999999988765 4567889999999999


Q ss_pred             CCCEEEEEECCCeEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          726 SYSTLLVVGGISSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       726 dg~~L~s~s~dg~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      ++++|++++.|+.|++||+.+++.+....|...|.+++|+|++++|++|+.||.|+|||
T Consensus       276 ~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWd  334 (337)
T d1gxra_         276 CGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE  334 (337)
T ss_dssp             TSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCCEEEEccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence            99999999999999999999999988888999999999999999999999999999997

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=8.5e-37  Score=323.00  Aligned_cols=288  Identities=20%  Similarity=0.329  Sum_probs=255.1

Q ss_pred             cceeEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEE
Q 047260          495 FTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVR  574 (784)
Q Consensus       495 ~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~  574 (784)
                      ..+...++|++|.+.|+||+|+|++++||+|+.||+|+|||+.+++.+..+..|...|++++|+|++.+|++|+.|+.|+
T Consensus        43 ~~~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~  122 (340)
T d1tbga_          43 IQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICS  122 (340)
T ss_dssp             CCCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEE
T ss_pred             cceeeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceee
Confidence            44567788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCCcc---eeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEe---ecCCeeEEEEecCCCEEE
Q 047260          575 LWDAANPNF---CSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHI---TKGGTAQVRFQPRIGQLL  648 (784)
Q Consensus       575 IWdl~~~~~---~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~---~~~~v~~v~fsp~~~~Ll  648 (784)
                      +|+......   ....+.+|...+.......+.  .+..+..+.....++.........   ....+....+.+....++
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (340)
T d1tbga_         123 IYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV  200 (340)
T ss_dssp             EEESSSSCSCCCEEEEECCCSSCEEEEEEEETT--EEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             cccccccccccccceeccccccccccccccccc--ccccccccccccccccccccccccccccceeEeeeccccccceeE
Confidence            999876432   344556777777666665443  567778899999998876554433   336678888999999999


Q ss_pred             EEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEec--cCCCceEEEEEec
Q 047260          649 AAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELS--SNGNQFHSCVFHP  725 (784)
Q Consensus       649 ~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~--~~~~~I~sl~fsp  725 (784)
                      +++.|+.|++||+++++++..+.+|...|++++|+|++.+|++++.+ .|++||++....+..+.  .+...|.+++|+|
T Consensus       201 ~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~  280 (340)
T d1tbga_         201 SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK  280 (340)
T ss_dssp             EEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECS
T ss_pred             EeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECC
Confidence            99999999999999999999999999999999999999999999865 99999999998877764  4567799999999


Q ss_pred             CCCEEEEEECCCeEEEEECCCCceE-EecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          726 SYSTLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       726 dg~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      ++.+|++++.||.|++||+.+++.+ .+.+|.+.|++++|+|++.+|+||+.||.|+|||
T Consensus       281 ~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         281 SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             SSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            9999999999999999999998887 6778999999999999999999999999999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.2e-36  Score=328.36  Aligned_cols=279  Identities=22%  Similarity=0.407  Sum_probs=239.2

Q ss_pred             eecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecC------------------CCCCCeEEEEEccCCCEE
Q 047260          503 IRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPE------------------DHKSVVTDVRFRPNSSQL  564 (784)
Q Consensus       503 l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~------------------~h~~~It~i~fspdg~~L  564 (784)
                      ..+|++.|+||+|+|||++||+|+ |+.|+|||+.+++.+..+.                  .|...|++|+|+|++++|
T Consensus        58 ~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l  136 (388)
T d1erja_          58 SLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL  136 (388)
T ss_dssp             EEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEE
T ss_pred             eCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcc
Confidence            346999999999999999999986 8999999999888776654                  466779999999999999


Q ss_pred             EEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec--CCeeEEEEec
Q 047260          565 ATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK--GGTAQVRFQP  642 (784)
Q Consensus       565 atgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~--~~v~~v~fsp  642 (784)
                      ++|+.||.|++||...++ ......+|...|.++.|++++. .+++++.++.|++||.+.........  ....++.+.+
T Consensus       137 ~s~~~dg~v~i~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~-~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~  214 (388)
T d1erja_         137 ATGAEDRLIRIWDIENRK-IVMILQGHEQDIYSLDYFPSGD-KLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSP  214 (388)
T ss_dssp             EEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECS
T ss_pred             eecccccccccccccccc-cccccccccccccccccccccc-cccccccceeeeeeeccccccccccccccccccccccC
Confidence            999999999999999866 6677788999999999999876 67788899999999999877665544  4445555554


Q ss_pred             -CCCEEEEEECCCcEEEEECCCCeEEEEEe-------CCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCc-------
Q 047260          643 -RIGQLLAAASDKVVSIFDIETDRQTHSLQ-------GHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGE-------  706 (784)
Q Consensus       643 -~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~-------~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~-------  706 (784)
                       ++.+|++++.|+.|++||.+++..+..+.       +|...|.+++|+|++.+|++++.+ .|++||++++.       
T Consensus       215 ~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  294 (388)
T d1erja_         215 GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKT  294 (388)
T ss_dssp             TTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-----------
T ss_pred             CCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCcccccccc
Confidence             67889999999999999999987776653       578899999999999999999865 99999997643       


Q ss_pred             -----eEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE-EecccCCceEEEEE------eCCCCEEEEE
Q 047260          707 -----CIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQ------SPVTGMVASA  774 (784)
Q Consensus       707 -----~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slaf------spdg~~LaSg  774 (784)
                           +......|...|.+++|+|++++|++++.||.|++||+.+++++ .+.+|.+.|.++++      +|++.+||||
T Consensus       295 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~  374 (388)
T d1erja_         295 PNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATG  374 (388)
T ss_dssp             ----CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEE
T ss_pred             ccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEE
Confidence                 34455678889999999999999999999999999999999887 77899999999985      5688999999


Q ss_pred             ECCCcEEEeC
Q 047260          775 SHDSSVKLWK  784 (784)
Q Consensus       775 s~DG~V~IWd  784 (784)
                      +.||+|+|||
T Consensus       375 s~Dg~I~iW~  384 (388)
T d1erja_         375 SGDCKARIWK  384 (388)
T ss_dssp             ETTSEEEEEE
T ss_pred             eCCCEEEEEe
Confidence            9999999996

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.3e-35  Score=313.90  Aligned_cols=276  Identities=13%  Similarity=0.227  Sum_probs=236.1

Q ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcce-
Q 047260          506 RNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFC-  584 (784)
Q Consensus       506 H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~-  584 (784)
                      +.+.+.+++++|+|+.||.+. ++.|.+||+++......+.+|...|++++|+|++++|++|+.||+|+|||+.+.... 
T Consensus        16 ~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~   94 (311)
T d1nr0a1          16 ARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHIL   94 (311)
T ss_dssp             CTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCE
T ss_pred             CCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccccc
Confidence            556678899999999999875 667999999999999999999999999999999999999999999999999886643 


Q ss_pred             eeeccCCCCCeEEEEEcCCCCcEEEEEe-CCCeEEEEeCCCCeeEEee---cCCeeEEEEecCCCE-EEEEECCCcEEEE
Q 047260          585 SQAYTGHSSPIMSLDFHPKKTDLFCFCD-NDNEIQYWSINPFLCTHIT---KGGTAQVRFQPRIGQ-LLAAASDKVVSIF  659 (784)
Q Consensus       585 ~~~~~~h~~~V~sl~~sp~~~~ll~sgs-~dg~I~iwDl~~~~~~~~~---~~~v~~v~fsp~~~~-Ll~~s~Dg~I~Iw  659 (784)
                      ...+..|..+|.+++|+|++..+++++. .+..+++|++++.+....+   ...+.+++|+|++.+ +++++.|+.|++|
T Consensus        95 ~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~  174 (311)
T d1nr0a1          95 KTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIF  174 (311)
T ss_dssp             EEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEE
T ss_pred             ccccccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeecccccccccccc
Confidence            3556789999999999999885554443 3567999999876665544   467899999999886 6678889999999


Q ss_pred             ECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEec-------cCCCceEEEEEecCCCEEE
Q 047260          660 DIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELS-------SNGNQFHSCVFHPSYSTLL  731 (784)
Q Consensus       660 Dl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~-------~~~~~I~sl~fspdg~~L~  731 (784)
                      |+++++....+..|...|++++|+|++++|++++.+ .|++||+.++..+..+.       +|...|.+++|+|++.+|+
T Consensus       175 d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~  254 (311)
T d1nr0a1         175 EGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIA  254 (311)
T ss_dssp             ETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEE
T ss_pred             cccccccccccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCCCEEE
Confidence            999999999999999999999999999999998855 99999999998887764       4678899999999999999


Q ss_pred             EEECCCeEEEEECCCCceE-EecccC---CceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          732 VVGGISSLELWNMAENKSM-TIAAHE---NIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       732 s~s~dg~I~Iwdl~~~~~~-~~~~h~---~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      +++.||.|+|||+.+++++ .+..|.   ..+.++.|  ++..|++++.||.|++||
T Consensus       255 tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~--~~~~l~s~s~dG~i~~wd  309 (311)
T d1nr0a1         255 SASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINFVN  309 (311)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEEEE
T ss_pred             EEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEe--cCCEEEEEECCCEEEEEe
Confidence            9999999999999999887 444443   23444554  466799999999999997

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.1e-34  Score=304.21  Aligned_cols=281  Identities=16%  Similarity=0.202  Sum_probs=230.8

Q ss_pred             EEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecC-CCCCCeEEEEEccCCCEEEEEeCCCeEEEEc
Q 047260          499 EVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPE-DHKSVVTDVRFRPNSSQLATASVDKSVRLWD  577 (784)
Q Consensus       499 ~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~-~h~~~It~i~fspdg~~Latgs~Dg~I~IWd  577 (784)
                      ..+.+.||.+.|+|++|+||+++||+|+.||+|+|||+++++.+..+. .|...|++++|+|++. +++++.|+.|++|+
T Consensus         4 ~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~~~   82 (299)
T d1nr0a2           4 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLKVVP   82 (299)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEEEEEC
T ss_pred             cceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-eecccceeeEEEec
Confidence            457789999999999999999999999999999999999999888874 6899999999999986 55667899999999


Q ss_pred             CCCCcc--eeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCCeeEEEEecCCCEEEEEECCCc
Q 047260          578 AANPNF--CSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAASDKV  655 (784)
Q Consensus       578 l~~~~~--~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~  655 (784)
                      +.....  .......+...+.+++|++++..+ +++ .++.+++|+..... .......+.+++|+|++..+++++.|+.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~-~~~-~~~~i~~~~~~~~~-~~~~~~~~~~~~~s~~~~~l~~g~~dg~  159 (299)
T d1nr0a2          83 AGGSGVDSSKAVANKLSSQPLGLAVSADGDIA-VAA-CYKHIAIYSHGKLT-EVPISYNSSCVALSNDKQFVAVGGQDSK  159 (299)
T ss_dssp             SSSSSSCTTSCCEEECSSCEEEEEECTTSSCE-EEE-ESSEEEEEETTEEE-EEECSSCEEEEEECTTSCEEEEEETTSE
T ss_pred             cCCccccccccccccccccccccccccccccc-ccc-cccccccccccccc-cccccccccccccccccccccccccccc
Confidence            875431  122334577889999999998743 333 46789999965432 2234467888999999999999999999


Q ss_pred             EEEEECCCCeEEE-EEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceE---EEeccCCCceEEEEEecCCCEE
Q 047260          656 VSIFDIETDRQTH-SLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECI---QELSSNGNQFHSCVFHPSYSTL  730 (784)
Q Consensus       656 I~IwDl~t~~~i~-~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i---~~l~~~~~~I~sl~fspdg~~L  730 (784)
                      |++||+++++... ....|...|++++|+|++.+|++++.+ .|++||+.++..+   ..+..|...|.+++|+|++.+|
T Consensus       160 i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l  239 (299)
T d1nr0a2         160 VHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRL  239 (299)
T ss_dssp             EEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccce
Confidence            9999998876544 344689999999999999999999865 9999999887654   3455688899999999999999


Q ss_pred             EEEECCCeEEEEECCCCceE---Eecc-cCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          731 LVVGGISSLELWNMAENKSM---TIAA-HENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       731 ~s~s~dg~I~Iwdl~~~~~~---~~~~-h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      ++++.|+.|++||+.++...   .... +...|.++.| +++++|++++.||.|+|||
T Consensus       240 ~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWd  296 (299)
T d1nr0a2         240 ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWN  296 (299)
T ss_dssp             EEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEE
T ss_pred             EEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEe
Confidence            99999999999999886543   2223 3456777655 5678999999999999997

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.3e-34  Score=315.77  Aligned_cols=277  Identities=16%  Similarity=0.228  Sum_probs=230.7

Q ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--eeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcc
Q 047260          506 RNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQ--TESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNF  583 (784)
Q Consensus       506 H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~--~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~  583 (784)
                      +.++|+|++|+|||++||+|+.||.|+|||+.+++  .+..+.+|.+.|++|+|+|++++|++|+.|++|+|||+.+...
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~   85 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW   85 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccc
Confidence            45789999999999999999999999999998664  6677889999999999999999999999999999999987653


Q ss_pred             -eeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeE----E---eecCCeeEEEEecCCCEEEEEECCCc
Q 047260          584 -CSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCT----H---ITKGGTAQVRFQPRIGQLLAAASDKV  655 (784)
Q Consensus       584 -~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~----~---~~~~~v~~v~fsp~~~~Ll~~s~Dg~  655 (784)
                       ....+.+|...|.+++|+|++. .|++++.|+.|++|+++.....    .   .+...+.+++|+|++.+|++++.|+.
T Consensus        86 ~~~~~~~~~~~~v~~i~~~p~~~-~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~  164 (371)
T d1k8kc_          86 KPTLVILRINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFK  164 (371)
T ss_dssp             EEEEECCCCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred             ccccccccccccccccccccccc-cceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcE
Confidence             3345568889999999999987 7788899999999988653221    1   13467899999999999999999999


Q ss_pred             EEEEECCCC------------------eEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCC
Q 047260          656 VSIFDIETD------------------RQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGN  716 (784)
Q Consensus       656 I~IwDl~t~------------------~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~  716 (784)
                      |++||+...                  ..+.....|...|.+++|+|++.+|++++.+ .|++||+.++..+..+..|..
T Consensus       165 v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  244 (371)
T d1k8kc_         165 CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL  244 (371)
T ss_dssp             EEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSC
T ss_pred             EEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeecccc
Confidence            999998642                  3556667899999999999999999999865 999999999999999999999


Q ss_pred             ceEEEEEecCCCEEEEEECCCeEEEEECC--CCceE----------------------------------------Eecc
Q 047260          717 QFHSCVFHPSYSTLLVVGGISSLELWNMA--ENKSM----------------------------------------TIAA  754 (784)
Q Consensus       717 ~I~sl~fspdg~~L~s~s~dg~I~Iwdl~--~~~~~----------------------------------------~~~~  754 (784)
                      +|.+++|+|++.+|+ ++.|+.+++|+..  .....                                        ....
T Consensus       245 ~v~s~~fs~d~~~la-~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (371)
T d1k8kc_         245 PLLAVTFITESSLVA-AGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSL  323 (371)
T ss_dssp             CEEEEEEEETTEEEE-EETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSS
T ss_pred             cceeeeecCCCCEEE-EEcCCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccceeccc
Confidence            999999999997665 5557766665432  22110                                        0013


Q ss_pred             cCCceEEEEEeCCC----CEEEEEECCCcEEEeC
Q 047260          755 HENIISALAQSPVT----GMVASASHDSSVKLWK  784 (784)
Q Consensus       755 h~~~V~slafspdg----~~LaSgs~DG~V~IWd  784 (784)
                      |.+.|+++++.+.+    ..|+|++.||.|+|||
T Consensus       324 H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~  357 (371)
T d1k8kc_         324 HKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD  357 (371)
T ss_dssp             SSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred             ccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEe
Confidence            88899999998754    3699999999999996

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-33  Score=301.04  Aligned_cols=282  Identities=14%  Similarity=0.253  Sum_probs=240.7

Q ss_pred             CCCCcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEE
Q 047260          436 GTGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHF  515 (784)
Q Consensus       436 ~~~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~f  515 (784)
                      .+...+.++.|.++...+ ++|+ |+.|++|+.........                     .......+|.+.|++++|
T Consensus        49 ~H~~~V~~v~fs~~g~~l-atg~-dg~V~iWd~~~~~~~~~---------------------~~~~~~~~h~~~I~~v~~  105 (337)
T d1gxra_          49 NHGEVVCAVTISNPTRHV-YTGG-KGCVKVWDISHPGNKSP---------------------VSQLDCLNRDNYIRSCKL  105 (337)
T ss_dssp             CCSSCCCEEEECSSSSEE-EEEC-BSEEEEEETTSTTCCSC---------------------SEEEECSCTTSBEEEEEE
T ss_pred             CCCCcEEEEEECCCCCEE-EEEE-CCEEEEEEccCCcccce---------------------eEEeeecCCCCcEEEEEE
Confidence            344567778887766555 4576 89999998754431111                     122334579999999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEECCC--CceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCC
Q 047260          516 SSDGKLLASSGHDRKVVLWNMDT--LQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSS  593 (784)
Q Consensus       516 spdg~~Lasgs~Dg~I~IWd~~t--~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~  593 (784)
                      +||+++|++|+.||.|+|||+..  .+....+..|...|.+++|+|++.++++++.|+.|++||+.+++ +.....+|..
T Consensus       106 s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~-~~~~~~~~~~  184 (337)
T d1gxra_         106 LPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT-LVRQFQGHTD  184 (337)
T ss_dssp             CTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-EEEEECCCSS
T ss_pred             cCCCCEEEEeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence            99999999999999999999874  45566778899999999999999999999999999999999876 6667788999


Q ss_pred             CeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEee--cCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEe
Q 047260          594 PIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHIT--KGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQ  671 (784)
Q Consensus       594 ~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~--~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~  671 (784)
                      .|.+++|++++. .+++++.|+.|++||+++.+.+..+  ...+.+++|+|++..+++++.|+.|++||+++++.. ...
T Consensus       185 ~v~~l~~s~~~~-~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~  262 (337)
T d1gxra_         185 GASCIDISNDGT-KLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLH  262 (337)
T ss_dssp             CEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EEC
T ss_pred             cccccccccccc-ccccccccccccccccccceeecccccccceEEEEEcccccccceeccccccccccccccccc-ccc
Confidence            999999999987 6778889999999999988876554  578999999999999999999999999999988765 455


Q ss_pred             CCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEEC
Q 047260          672 GHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNM  744 (784)
Q Consensus       672 ~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl  744 (784)
                      .|...|++++|+|++++|++++.+ .|++||+.+++++..+. |...|.+++|+|++++|++++.||+|+|||+
T Consensus       263 ~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         263 LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             ccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            699999999999999999999865 99999999999988765 6688999999999999999999999999996

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.9e-33  Score=300.10  Aligned_cols=245  Identities=16%  Similarity=0.242  Sum_probs=214.0

Q ss_pred             EeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcee--eecCCCCCCeEEEEEccCCCEEEEEeC--CCeEEE
Q 047260          500 VGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTE--STPEDHKSVVTDVRFRPNSSQLATASV--DKSVRL  575 (784)
Q Consensus       500 i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~--~~l~~h~~~It~i~fspdg~~Latgs~--Dg~I~I  575 (784)
                      ...+.+|.+.|+|++|+|+|++||+|+.||+|+|||+.+....  ..+..|...|.+++|+|++++|++++.  +..++|
T Consensus        51 ~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v  130 (311)
T d1nr0a1          51 TEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHV  130 (311)
T ss_dssp             CEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEE
T ss_pred             eEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCccccccccccccccccccccccccccc
Confidence            3456789999999999999999999999999999999876643  557789999999999999999999986  456999


Q ss_pred             EcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEEEEC
Q 047260          576 WDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLAAAS  652 (784)
Q Consensus       576 Wdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~~s~  652 (784)
                      |++++.+ ....+.+|...|.+++|+|++..+|++|+.|+.|++||+++.+......   ..+.++.|+|++.++++++.
T Consensus       131 ~~~~~~~-~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~  209 (311)
T d1nr0a1         131 FLFDTGT-SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG  209 (311)
T ss_dssp             EETTTCC-BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             ccccccc-ccccccccccccccccccccceeeecccccccccccccccccccccccccccccccccccCccccccccccc
Confidence            9999866 5677889999999999999999889999999999999999988777654   67899999999999999999


Q ss_pred             CCcEEEEECCCCeEEEEEe-------CCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCC-ceEEEEE
Q 047260          653 DKVVSIFDIETDRQTHSLQ-------GHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGN-QFHSCVF  723 (784)
Q Consensus       653 Dg~I~IwDl~t~~~i~~l~-------~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~-~I~sl~f  723 (784)
                      |+.|++||++++..+..+.       +|...|++++|+|++++|++++.| .|+|||+++++++.++..+.. ....+.+
T Consensus       210 d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~  289 (311)
T d1nr0a1         210 DGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGI  289 (311)
T ss_dssp             TSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEE
Confidence            9999999999988877764       478899999999999999999865 999999999999999976643 2334445


Q ss_pred             ecCCCEEEEEECCCeEEEEECC
Q 047260          724 HPSYSTLLVVGGISSLELWNMA  745 (784)
Q Consensus       724 spdg~~L~s~s~dg~I~Iwdl~  745 (784)
                      .+++..|++++.||.|++||++
T Consensus       290 ~~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         290 IWTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             EECSSCEEEEETTCCEEEEETT
T ss_pred             EecCCEEEEEECCCEEEEEeCC
Confidence            5566689999999999999974

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.2e-32  Score=283.82  Aligned_cols=279  Identities=21%  Similarity=0.406  Sum_probs=247.0

Q ss_pred             CCCCcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEE
Q 047260          436 GTGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHF  515 (784)
Q Consensus       436 ~~~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~f  515 (784)
                      |+...+.++.+.++.. ++.+|+.|++|++|+....                          ..+.++.+|.+.|.+++|
T Consensus        15 GH~~~I~~l~~sp~~~-~l~s~s~Dg~i~iWd~~~~--------------------------~~~~~~~~h~~~V~~~~~   67 (317)
T d1vyhc1          15 GHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETG--------------------------DFERTLKGHTDSVQDISF   67 (317)
T ss_dssp             CCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTC--------------------------CCCEEECCCSSCEEEEEE
T ss_pred             CCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCC--------------------------CEEEEEeCCCCcEEEEee
Confidence            3444567777777654 5567899999999976332                          134567889999999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCe
Q 047260          516 SSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPI  595 (784)
Q Consensus       516 spdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V  595 (784)
                      ++++.++++++.++.+.+|+....+....+..|...+.++.|++++..+++++.|+.+++||++++. ....+.+|...+
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~  146 (317)
T d1vyhc1          68 DHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY-CVKTFTGHREWV  146 (317)
T ss_dssp             CTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC-EEEEEECCSSCE
T ss_pred             ecccccccccccccccccccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccce-eeeEEccCCCcc
Confidence            9999999999999999999999999999999999999999999999999999999999999999876 667788999999


Q ss_pred             EEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCC--------------------CEEEEEEC
Q 047260          596 MSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRI--------------------GQLLAAAS  652 (784)
Q Consensus       596 ~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~--------------------~~Ll~~s~  652 (784)
                      .+++|++++. +|++++.|+.|++|++........+.   ..+.++.|+|+.                    ..+++++.
T Consensus       147 ~~~~~~~~~~-~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (317)
T d1vyhc1         147 RMVRPNQDGT-LIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR  225 (317)
T ss_dssp             EEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEET
T ss_pred             eeeecccCCC-EEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccC
Confidence            9999999877 78899999999999999877766544   556777776643                    46888999


Q ss_pred             CCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEE
Q 047260          653 DKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLL  731 (784)
Q Consensus       653 Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~  731 (784)
                      |+.|++||+++++++..+.+|...|.+++|+|++++|++++.+ .|+|||+.+++++.++.+|...|++++|+|++++|+
T Consensus       226 d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~  305 (317)
T d1vyhc1         226 DKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVV  305 (317)
T ss_dssp             TSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEE
T ss_pred             CCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEE
Confidence            9999999999999999999999999999999999999998855 999999999999999999999999999999999999


Q ss_pred             EEECCCeEEEEE
Q 047260          732 VVGGISSLELWN  743 (784)
Q Consensus       732 s~s~dg~I~Iwd  743 (784)
                      +++.||+|+|||
T Consensus       306 s~s~Dg~i~iWd  317 (317)
T d1vyhc1         306 TGSVDQTVKVWE  317 (317)
T ss_dssp             EEETTSEEEEEC
T ss_pred             EEeCCCeEEEeC
Confidence            999999999997

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-31  Score=281.41  Aligned_cols=279  Identities=17%  Similarity=0.323  Sum_probs=223.2

Q ss_pred             eeEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEE
Q 047260          497 FCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLW  576 (784)
Q Consensus       497 ~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IW  576 (784)
                      +...+.|++|++.|.+ +++++|++||||+.||+|+|||+.+++++.++.+|...|++++|+++  +|++|+.|+.+++|
T Consensus         6 ~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~   82 (342)
T d2ovrb2           6 LKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVW   82 (342)
T ss_dssp             CCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEE
T ss_pred             CCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceeccccccc
Confidence            4566789999999865 36668999999999999999999999999999999999999999864  99999999999999


Q ss_pred             cCCCCcceeeeccCCCCCeEEE--------------------------------------EEcCCCCcEEEEEeCCCeEE
Q 047260          577 DAANPNFCSQAYTGHSSPIMSL--------------------------------------DFHPKKTDLFCFCDNDNEIQ  618 (784)
Q Consensus       577 dl~~~~~~~~~~~~h~~~V~sl--------------------------------------~~sp~~~~ll~sgs~dg~I~  618 (784)
                      +....... .....+...+...                                      .+... ...+++++.|+.|+
T Consensus        83 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~i~  160 (342)
T d2ovrb2          83 NAETGECI-HTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD-GRRVVSGAYDFMVK  160 (342)
T ss_dssp             ETTTTEEE-EEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEEC-SSCEEEEETTSCEE
T ss_pred             ccccccce-ecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccc-cceeeeecCCCeEE
Confidence            98764421 1111111111111                                      11111 22566778889999


Q ss_pred             EEeCCCCeeEEeecC-CeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-e
Q 047260          619 YWSINPFLCTHITKG-GTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-L  696 (784)
Q Consensus       619 iwDl~~~~~~~~~~~-~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~  696 (784)
                      +||.+....+..+.+ ......+.+++..+++++.||.|++||++.++.+..+.+|...+.++++++  ++|++++.+ .
T Consensus       161 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~s~d~~  238 (342)
T d2ovrb2         161 VWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNADST  238 (342)
T ss_dssp             EEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET--TEEEEEETTSC
T ss_pred             EeecccceeeEEEcCcccccccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCC--CEEEEEcCCCE
Confidence            999988777766654 345556777889999999999999999999999999999999999888764  588888865 9


Q ss_pred             EEEEeCCCCceEEEeccC---CCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE-Ee-----cccCCceEEEEEeCC
Q 047260          697 VKVWSMASGECIQELSSN---GNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM-TI-----AAHENIISALAQSPV  767 (784)
Q Consensus       697 I~IwDl~t~~~i~~l~~~---~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~-~~-----~~h~~~V~slafspd  767 (784)
                      |++||+...+....+..+   ...+.++.+  ++.++++++.||.|+|||+.+++.+ .+     .+|.+.|++++|+|+
T Consensus       239 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~  316 (342)
T d2ovrb2         239 VKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNT  316 (342)
T ss_dssp             EEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSS
T ss_pred             EEEEecccccccccccccceeeeceeeccc--CCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCC
Confidence            999999999888887653   445555555  4569999999999999999999876 22     357889999999999


Q ss_pred             CCEEEEEECCCc----EEEeC
Q 047260          768 TGMVASASHDSS----VKLWK  784 (784)
Q Consensus       768 g~~LaSgs~DG~----V~IWd  784 (784)
                      +.+|++|+.||+    |++||
T Consensus       317 ~~~la~g~~dGt~~~~l~~~D  337 (342)
T d2ovrb2         317 KLVCAVGSRNGTEETKLLVLD  337 (342)
T ss_dssp             EEEEEEECSSSSSCCEEEEEE
T ss_pred             CCEEEEEeCCCCCeeEEEEEe
Confidence            999999999986    89997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.3e-32  Score=291.51  Aligned_cols=297  Identities=19%  Similarity=0.338  Sum_probs=234.3

Q ss_pred             CCCcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEc
Q 047260          437 TGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFS  516 (784)
Q Consensus       437 ~~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fs  516 (784)
                      +...+.++.|.++.. ++++|+ |+.|++|+..++.....+    .....    ...............|...|++++|+
T Consensus        61 H~~~V~~l~fs~dg~-~lasg~-d~~i~iW~~~~~~~~~~~----~~~~~----~~~~~~~~~~~~~~~~~~~V~~l~~s  130 (388)
T d1erja_          61 HTSVVCCVKFSNDGE-YLATGC-NKTTQVYRVSDGSLVARL----SDDSA----ANKDPENLNTSSSPSSDLYIRSVCFS  130 (388)
T ss_dssp             CSSCCCEEEECTTSS-EEEEEC-BSCEEEEETTTCCEEEEE----CC---------------------CCCCBEEEEEEC
T ss_pred             CCCcEEEEEECCCCC-EEEEEe-CCeEEEEEecccceEeee----ccccc----ccccccccccccccCCCCCEEEEEEC
Confidence            556677888877665 556676 999999988554321111    11100    00111112233456799999999999


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeE
Q 047260          517 SDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIM  596 (784)
Q Consensus       517 pdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~  596 (784)
                      |++++|++|+.||.|++||...++.+..+.+|...|.++.|++++..+++++.++.|++||+.+.. ...... +...+.
T Consensus       131 ~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-~~~~~~-~~~~~~  208 (388)
T d1erja_         131 PDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ-CSLTLS-IEDGVT  208 (388)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-EEEEEE-CSSCEE
T ss_pred             CCCCcceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeeccccc-cccccc-cccccc
Confidence            999999999999999999999999999999999999999999999999999999999999999765 333333 445566


Q ss_pred             EEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEee----------cCCeeEEEEecCCCEEEEEECCCcEEEEECCCCe-
Q 047260          597 SLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHIT----------KGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDR-  665 (784)
Q Consensus       597 sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~----------~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~-  665 (784)
                      ++.+.+....+|++++.|+.|++||+++......+          ...+.++.|+|++.+|++++.|+.|++||++++. 
T Consensus       209 ~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~  288 (388)
T d1erja_         209 TVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN  288 (388)
T ss_dssp             EEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-----
T ss_pred             cccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCcc
Confidence            77777766679999999999999999977665443          3578999999999999999999999999997643 


Q ss_pred             -----------EEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEE------ecCC
Q 047260          666 -----------QTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVF------HPSY  727 (784)
Q Consensus       666 -----------~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~f------spdg  727 (784)
                                 .......|...|.+++|+|++++|++++.+ .|+|||+++++++.++.+|...|.++++      +|++
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~  368 (388)
T d1erja_         289 KSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEY  368 (388)
T ss_dssp             ----------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTC
T ss_pred             ccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCC
Confidence                       234455688999999999999999999865 9999999999999999999999999875      5788


Q ss_pred             CEEEEEECCCeEEEEECC
Q 047260          728 STLLVVGGISSLELWNMA  745 (784)
Q Consensus       728 ~~L~s~s~dg~I~Iwdl~  745 (784)
                      .+|++++.||+|+||+++
T Consensus       369 ~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         369 NVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             EEEEEEETTSEEEEEEEE
T ss_pred             CEEEEEeCCCEEEEEeee
Confidence            999999999999999974

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.4e-31  Score=279.93  Aligned_cols=297  Identities=18%  Similarity=0.273  Sum_probs=234.2

Q ss_pred             CceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCCCEEEEEeCCCe
Q 047260          451 DRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRK  530 (784)
Q Consensus       451 ~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~  530 (784)
                      ++++.+|+.|++|++|+....                          ..+.++.+|.+.|++++|+++ .+|++|+.|+.
T Consensus        23 ~~~l~tgs~Dg~i~vWd~~~~--------------------------~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~   75 (355)
T d1nexb2          23 DNYVITGADDKMIRVYDSINK--------------------------KFLLQLSGHDGGVWALKYAHG-GILVSGSTDRT   75 (355)
T ss_dssp             TTEEEEEETTTEEEEEETTTT--------------------------EEEEEEECCSSCEEEEEEETT-TEEEEEETTCC
T ss_pred             CCEEEEEeCCCeEEEEECCCC--------------------------cEEEEEECCCCCEEEEEEcCC-CEEEEEecccc
Confidence            456778999999999976321                          356778999999999999986 58999999999


Q ss_pred             EEEEECCCCceeeecCCCC--CCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCccee----------------------e
Q 047260          531 VVLWNMDTLQTESTPEDHK--SVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCS----------------------Q  586 (784)
Q Consensus       531 I~IWd~~t~~~~~~l~~h~--~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~----------------------~  586 (784)
                      |++|++...+.......+.  ..+..+.+.+++.++++++.|+.|++||+.+.....                      .
T Consensus        76 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (355)
T d1nexb2          76 VRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVG  155 (355)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEE
T ss_pred             cccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceee
Confidence            9999999888776655443  345667778899999999999999999998644211                      1


Q ss_pred             eccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEEEECCCcEEEEECCC
Q 047260          587 AYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLAAASDKVVSIFDIET  663 (784)
Q Consensus       587 ~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t  663 (784)
                      ....|...+.....  ++. +++++..|+.|++||+++.+.+....   ..+.++.+++.+..+++++.|+.|++||+++
T Consensus       156 ~~~~~~~~v~~~~~--~~~-~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~  232 (355)
T d1nexb2         156 VLRGHMASVRTVSG--HGN-IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN  232 (355)
T ss_dssp             EEECCSSCEEEEEE--ETT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT
T ss_pred             eeeecccccccccc--ccc-eeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeeccc
Confidence            11223344444333  333 78889999999999999888776654   5677889999999999999999999999999


Q ss_pred             CeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEE-EEecCCCEEEEEECCCeEEE
Q 047260          664 DRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSC-VFHPSYSTLLVVGGISSLEL  741 (784)
Q Consensus       664 ~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl-~fspdg~~L~s~s~dg~I~I  741 (784)
                      +..+..+.+|...|.+++|+  +++|++++.+ .|++||++++.....  .|...+.++ .+++++.++ +++.|+.|+|
T Consensus       233 ~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~l-~~g~d~~i~v  307 (355)
T d1nexb2         233 GELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFS--YHHTNLSAITTFYVSDNIL-VSGSENQFNI  307 (355)
T ss_dssp             CCEEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEEEE--EECTTCCCCCEEEECSSEE-EEEETTEEEE
T ss_pred             cccccccccccccccccccc--cceeeeeecccccccccccccceecc--cccCCceEEEEEcCCCCEE-EEEeCCEEEE
Confidence            99999999999999999986  4688888855 999999998876544  444555555 456666654 5556899999


Q ss_pred             EECCCCceE--EecccCCceEEEEEeCCCCEEEEEECCCcEEEe
Q 047260          742 WNMAENKSM--TIAAHENIISALAQSPVTGMVASASHDSSVKLW  783 (784)
Q Consensus       742 wdl~~~~~~--~~~~h~~~V~slafspdg~~LaSgs~DG~V~IW  783 (784)
                      ||+++++.+  .+.+|.+.|.+++|+|+ .+|++++.||.++||
T Consensus       308 wd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~  350 (355)
T d1nexb2         308 YNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLE  350 (355)
T ss_dssp             EETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEE
T ss_pred             EECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEE
Confidence            999999877  45689999999999986 578889999997776

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.7e-31  Score=280.77  Aligned_cols=278  Identities=13%  Similarity=0.230  Sum_probs=223.3

Q ss_pred             EEeEeecCCCce-EEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEc
Q 047260          499 EVGCIRSRNSKV-TCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWD  577 (784)
Q Consensus       499 ~i~~l~~H~~~V-~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWd  577 (784)
                      +..+|++|.+.| +|++|  ++++||||+.||+|+|||+.+++.+.++.+|.+.|++|+|+++ .+|++|+.|++|++|+
T Consensus         4 ~~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~   80 (355)
T d1nexb2           4 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWD   80 (355)
T ss_dssp             EEEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEE
T ss_pred             CcEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccccc
Confidence            467799999886 56655  5789999999999999999999999999999999999999985 5899999999999999


Q ss_pred             CCCCcceeeecc-CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec------------------------
Q 047260          578 AANPNFCSQAYT-GHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK------------------------  632 (784)
Q Consensus       578 l~~~~~~~~~~~-~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~------------------------  632 (784)
                      +........... .+...+..+.+.+++. .+++++.|+.|++||++.........                        
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (355)
T d1nexb2          81 IKKGCCTHVFEGHNSTVRCLDIVEYKNIK-YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG  159 (355)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEEEEETTEE-EEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEEC
T ss_pred             ccccccccccccccccccccccccccccc-eeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeee
Confidence            988663332222 2233345556666654 78889999999999997643322111                        


Q ss_pred             CCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEe
Q 047260          633 GGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQEL  711 (784)
Q Consensus       633 ~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l  711 (784)
                      .......+.+++..++++..|+.|++||+++++.+..+.++...+.++.|++++.++++++.+ .|++||+.++.++..+
T Consensus       160 ~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~  239 (355)
T d1nexb2         160 HMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL  239 (355)
T ss_dssp             CSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             ccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccccccccc
Confidence            111223466778899999999999999999999999999999999999999999999999866 9999999999999999


Q ss_pred             ccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceEEecccCCceEEE-EEeCCCCEEEEEECCCcEEEeC
Q 047260          712 SSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIAAHENIISAL-AQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       712 ~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~~~h~~~V~sl-afspdg~~LaSgs~DG~V~IWd  784 (784)
                      .+|...|.++.+++  ++|++++.||.|++||+.+..... ..|...+.++ ++++++.+|++| .||.|+|||
T Consensus       240 ~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd  309 (355)
T d1nexb2         240 QGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRKF-SYHHTNLSAITTFYVSDNILVSG-SENQFNIYN  309 (355)
T ss_dssp             CCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCEEE-EEECTTCCCCCEEEECSSEEEEE-ETTEEEEEE
T ss_pred             cccccccccccccc--ceeeeeecccccccccccccceec-ccccCCceEEEEEcCCCCEEEEE-eCCEEEEEE
Confidence            99999999999975  589999999999999999876553 3455555554 556777776665 589999997

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.4e-31  Score=286.98  Aligned_cols=280  Identities=16%  Similarity=0.199  Sum_probs=225.1

Q ss_pred             ccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCCC
Q 047260          441 ASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGK  520 (784)
Q Consensus       441 ~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~  520 (784)
                      +.+..+.++.. ++++|+.|+.|++|+...+                        .+..+..+++|.+.|++++|+|+++
T Consensus        10 It~~~~s~dg~-~la~~~~~~~i~iw~~~~~------------------------~~~~~~~l~gH~~~V~~l~fsp~~~   64 (371)
T d1k8kc_          10 ISCHAWNKDRT-QIAICPNNHEVHIYEKSGN------------------------KWVQVHELKEHNGQVTGVDWAPDSN   64 (371)
T ss_dssp             CCEEEECTTSS-EEEEECSSSEEEEEEEETT------------------------EEEEEEEEECCSSCEEEEEEETTTT
T ss_pred             eEEEEECCCCC-EEEEEeCCCEEEEEECCCC------------------------CEEEEEEecCCCCCEEEEEECCCCC
Confidence            34555666554 4556888999999976322                        2346778899999999999999999


Q ss_pred             EEEEEeCCCeEEEEECCCCce--eeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcc---eeeeccCCCCCe
Q 047260          521 LLASSGHDRKVVLWNMDTLQT--ESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNF---CSQAYTGHSSPI  595 (784)
Q Consensus       521 ~Lasgs~Dg~I~IWd~~t~~~--~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~---~~~~~~~h~~~V  595 (784)
                      +|++|+.|++|+|||+.++..  ...+..|...|++++|+|++++|++++.|++|++|+++....   .......|...|
T Consensus        65 ~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v  144 (371)
T d1k8kc_          65 RIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTV  144 (371)
T ss_dssp             EEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCE
T ss_pred             EEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeecccCcceeeeeeccccccccccccccccccc
Confidence            999999999999999987654  445678999999999999999999999999999999876542   234456789999


Q ss_pred             EEEEEcCCCCcEEEEEeCCCeEEEEeCCCC------------------eeEE---eecCCeeEEEEecCCCEEEEEECCC
Q 047260          596 MSLDFHPKKTDLFCFCDNDNEIQYWSINPF------------------LCTH---ITKGGTAQVRFQPRIGQLLAAASDK  654 (784)
Q Consensus       596 ~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~------------------~~~~---~~~~~v~~v~fsp~~~~Ll~~s~Dg  654 (784)
                      .+++|+|++. +|++++.|+.|++||....                  ....   .+...+.+++|+|++..|++++.|+
T Consensus       145 ~~v~~~p~~~-~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~  223 (371)
T d1k8kc_         145 LSLDWHPNSV-LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDS  223 (371)
T ss_dssp             EEEEECTTSS-EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTT
T ss_pred             cccccccccc-ceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCC
Confidence            9999999987 7789999999999998532                  1122   2235688999999999999999999


Q ss_pred             cEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEe--CCCCceEEE----------------------
Q 047260          655 VVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQNLVKVWS--MASGECIQE----------------------  710 (784)
Q Consensus       655 ~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd~I~IwD--l~t~~~i~~----------------------  710 (784)
                      .|++||+.+++.+..+..|..+|.+++|+|++.+|++|+|+.+++|+  ...+.....                      
T Consensus       224 ~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (371)
T d1k8kc_         224 TVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQN  303 (371)
T ss_dssp             EEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHH
T ss_pred             cceEEeeecccceeeeecccccceeeeecCCCCEEEEEcCCceEEEEeeCCCceEEEeeeecCccccccccccceeeEec
Confidence            99999999999999999999999999999999999999888555554  332221100                      


Q ss_pred             -----------------eccCCCceEEEEEecCC----CEEEEEECCCeEEEEECCC
Q 047260          711 -----------------LSSNGNQFHSCVFHPSY----STLLVVGGISSLELWNMAE  746 (784)
Q Consensus       711 -----------------l~~~~~~I~sl~fspdg----~~L~s~s~dg~I~Iwdl~~  746 (784)
                                       ...|.+.|.++++.+.+    ..|++++.||.|+|||+++
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~  360 (371)
T d1k8kc_         304 LDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS  360 (371)
T ss_dssp             CCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred             ccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCc
Confidence                             01266789999998755    3588999999999999854

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-30  Score=265.81  Aligned_cols=272  Identities=17%  Similarity=0.403  Sum_probs=219.7

Q ss_pred             eeEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEE
Q 047260          497 FCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLW  576 (784)
Q Consensus       497 ~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IW  576 (784)
                      +.++.+..+|...|+|++|  |+++||||+.||+|+|||+.+++.+.++.+|...|++|+|  ++++|++|+.|+.|++|
T Consensus         5 ~~~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~   80 (293)
T d1p22a2           5 LQRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVW   80 (293)
T ss_dssp             CCCEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEE
T ss_pred             EEEEeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccccccccc
Confidence            4567778889999999765  7899999999999999999999999999999999999988  57899999999999999


Q ss_pred             cCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCee---EEee---cCCeeEEEEecCCCEEEEE
Q 047260          577 DAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLC---THIT---KGGTAQVRFQPRIGQLLAA  650 (784)
Q Consensus       577 dl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~---~~~~---~~~v~~v~fsp~~~~Ll~~  650 (784)
                      ++..+.. ......+......  +.+... .++++..++.+.+||......   ....   ...+..+.+  ....++++
T Consensus        81 ~~~~~~~-~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~  154 (293)
T d1p22a2          81 DVNTGEM-LNTLIHHCEAVLH--LRFNNG-MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSA  154 (293)
T ss_dssp             ESSSCCE-EEEECCCCSCEEE--EECCTT-EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEE
T ss_pred             ccccccc-ccccccccccccc--cccccc-ceeecccccceeEeecccccccccccccccccccccccee--cccccccc
Confidence            9998763 3333333333333  333333 677888999999999986432   2222   234444444  45678899


Q ss_pred             ECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCCCE
Q 047260          651 ASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYST  729 (784)
Q Consensus       651 s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~  729 (784)
                      +.|+.|++||+++++.+..+.++...|..+.++  +.++++++.+ .|++||+++...+..+..+...+..  +.+++.+
T Consensus       155 s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~  230 (293)
T d1p22a2         155 SGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKR  230 (293)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSE
T ss_pred             cCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccceeeee--ccccceE
Confidence            999999999999999999999999999888876  4577777754 9999999999999999888877764  5667789


Q ss_pred             EEEEECCCeEEEEECCCC---------ce-EEecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          730 LLVVGGISSLELWNMAEN---------KS-MTIAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       730 L~s~s~dg~I~Iwdl~~~---------~~-~~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      |++++.||.|++||+...         .. ..+.+|.+.|++++|+  +.+|+||+.||+|+|||
T Consensus       231 l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         231 IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             EEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred             EEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence            999999999999997532         22 2677899999999995  57899999999999998

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.2e-30  Score=269.87  Aligned_cols=266  Identities=12%  Similarity=0.183  Sum_probs=222.6

Q ss_pred             eEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEc
Q 047260          498 CEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWD  577 (784)
Q Consensus       498 ~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWd  577 (784)
                      +.+++|++|.++|+|++|+|    |+||+.||+|++||+.++     ...|...|.++.|+++. .+++++.|++|++|+
T Consensus         4 ~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~   73 (287)
T d1pgua2           4 EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNG   73 (287)
T ss_dssp             EEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCSTT-CCEEEETTTEEEETT
T ss_pred             ceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC-----CCCCCCCEEEEEecCCC-eEEEEeecccccccc
Confidence            56889999999999999987    999999999999998753     35799999999998754 689999999999999


Q ss_pred             CCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCCeeEEEEecCCCEEEEEECC-CcE
Q 047260          578 AANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAASD-KVV  656 (784)
Q Consensus       578 l~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v~~v~fsp~~~~Ll~~s~D-g~I  656 (784)
                      +...+        ....+.++.+++++. +++ ...++.+.+|+......+..........++++++..+++++.+ +.|
T Consensus        74 ~~~~~--------~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v  143 (287)
T d1pgua2          74 ITKHE--------FGSQPKVASANNDGF-TAV-LTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTI  143 (287)
T ss_dssp             EEEEE--------CSSCEEEEEECSSSE-EEE-EETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCE
T ss_pred             ccccc--------cccceeeeeeccCCc-eEE-EeecccceeeeccceeeeeeccccceeeeeeccCcceeeecccccee
Confidence            86422        234577888888764 333 4557789999999888888877666777888999999999886 479


Q ss_pred             EEEECCCCeEEEEEe-CCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEE-eccCCCceEEEEEecC-------
Q 047260          657 SIFDIETDRQTHSLQ-GHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQE-LSSNGNQFHSCVFHPS-------  726 (784)
Q Consensus       657 ~IwDl~t~~~i~~l~-~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~-l~~~~~~I~sl~fspd-------  726 (784)
                      ++|++...+....+. .|...+++++|+|++.+|++++.+ .|++||+.+++.+.. +..|...|.+++|+|.       
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~  223 (287)
T d1pgua2         144 QVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEE  223 (287)
T ss_dssp             EEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------
T ss_pred             eeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccc
Confidence            999998776666554 477899999999999999999865 999999999887654 5688899999999875       


Q ss_pred             ---CCEEEEEECCCeEEEEECCCC-ceE-EecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          727 ---YSTLLVVGGISSLELWNMAEN-KSM-TIAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       727 ---g~~L~s~s~dg~I~Iwdl~~~-~~~-~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                         +.+|++++.|++|+|||+... +.+ .+.+|...|++++|+|++ .|++++.||.|+|||
T Consensus       224 ~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~  285 (287)
T d1pgua2         224 EIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWN  285 (287)
T ss_dssp             CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEE
T ss_pred             cCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEE
Confidence               468999999999999999774 344 456899999999999976 689999999999996

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=6.7e-30  Score=273.47  Aligned_cols=277  Identities=14%  Similarity=0.197  Sum_probs=218.6

Q ss_pred             CceEEEEEcCCCCEEEEEeCCC-eEEEEECCCC--ceeeecCCC-CCCeEEEEEcc--CCCEEEEEeCCCeEEEEcCCCC
Q 047260          508 SKVTCCHFSSDGKLLASSGHDR-KVVLWNMDTL--QTESTPEDH-KSVVTDVRFRP--NSSQLATASVDKSVRLWDAANP  581 (784)
Q Consensus       508 ~~V~~l~fspdg~~Lasgs~Dg-~I~IWd~~t~--~~~~~l~~h-~~~It~i~fsp--dg~~Latgs~Dg~I~IWdl~~~  581 (784)
                      +.+++++|+|+++.|++++.+. .|+.|+....  ..+..+.+| ...|++++|+|  ++.+|++|+.||+|+|||+...
T Consensus        18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~   97 (325)
T d1pgua1          18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFD   97 (325)
T ss_dssp             TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEE
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCC
Confidence            3478999999999999887554 3566665433  345566677 46899999998  6789999999999999998754


Q ss_pred             cce-------eeeccCCCCCeEEEEEcCCCCcEEEEE-eCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCCE-EEE
Q 047260          582 NFC-------SQAYTGHSSPIMSLDFHPKKTDLFCFC-DNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQ-LLA  649 (784)
Q Consensus       582 ~~~-------~~~~~~h~~~V~sl~~sp~~~~ll~sg-s~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~-Ll~  649 (784)
                      ...       ...+..|.++|.+++|++++..+++++ +.++.+++|+.++.+++..+.   ..+.+++|+|++.. +++
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  177 (325)
T d1pgua1          98 KESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMT  177 (325)
T ss_dssp             GGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEE
T ss_pred             cceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEE
Confidence            321       123456889999999999998666555 357789999999887776654   67899999999876 567


Q ss_pred             EECCCcEEEEECCCCeEEEEEe---CCCCCEEEEEEcCC-CCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEe
Q 047260          650 AASDKVVSIFDIETDRQTHSLQ---GHAELVNYICWDTN-GDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFH  724 (784)
Q Consensus       650 ~s~Dg~I~IwDl~t~~~i~~l~---~h~~~V~sl~~spd-g~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fs  724 (784)
                      ++.|+.|++||.+..+....+.   .|...|.+++|+|+ +.+|++++.+ .|++||+++++++.++..|...+..+.|+
T Consensus       178 ~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s  257 (325)
T d1pgua1         178 VGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFA  257 (325)
T ss_dssp             EETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEE
T ss_pred             eecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceee
Confidence            8889999999999887766654   46778999999996 6888888755 99999999999999999888877666665


Q ss_pred             ---cCCCEEEEEECCCeEEEEECCCCceE-EecccC--CceEEEEEeCC-CCEEEEEECCCcEEEeC
Q 047260          725 ---PSYSTLLVVGGISSLELWNMAENKSM-TIAAHE--NIISALAQSPV-TGMVASASHDSSVKLWK  784 (784)
Q Consensus       725 ---pdg~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~--~~V~slafspd-g~~LaSgs~DG~V~IWd  784 (784)
                         |++.+|++++.|+.|+|||+.+++.+ .+..|.  ..+..+++.+. +.+|++++.||.|+|||
T Consensus       258 ~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwd  324 (325)
T d1pgua1         258 LSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYE  324 (325)
T ss_dssp             EEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEE
T ss_pred             eeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEE
Confidence               78899999999999999999999877 333333  33444444432 34899999999999997

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=1.2e-28  Score=259.84  Aligned_cols=279  Identities=20%  Similarity=0.313  Sum_probs=236.2

Q ss_pred             CCCCCcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEE
Q 047260          435 EGTGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCH  514 (784)
Q Consensus       435 ~~~~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~  514 (784)
                      .|+...+.++.|.++.. ++.+|+.|++|++|+....                          ..+..+..|...|++++
T Consensus        52 ~GH~~~I~~l~~s~~~~-~l~sgs~Dg~v~iWd~~~~--------------------------~~~~~~~~~~~~v~~v~  104 (340)
T d1tbga_          52 RGHLAKIYAMHWGTDSR-LLVSASQDGKLIIWDSYTT--------------------------NKVHAIPLRSSWVMTCA  104 (340)
T ss_dssp             CCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTT--------------------------EEEEEEECSCSCEEEEE
T ss_pred             CCCCCCEEEEEECCCCC-EEEEEECCCceeeeecccc--------------------------eeEEEEecccccEEeeE
Confidence            35556677888877665 4557999999999976322                          34567788999999999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEECCCC----ceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccC
Q 047260          515 FSSDGKLLASSGHDRKVVLWNMDTL----QTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTG  590 (784)
Q Consensus       515 fspdg~~Lasgs~Dg~I~IWd~~t~----~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~  590 (784)
                      |+|++++|++|+.|+.|++|+....    .....+.+|...+....+.. +..++....|.....|+..... .......
T Consensus       105 ~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  182 (340)
T d1tbga_         105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIETGQ-QTTTFTG  182 (340)
T ss_dssp             ECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEE-TTEEEEEETTTEEEEEETTTTE-EEEEEEC
T ss_pred             eeccceeeeeecccceeecccccccccccccceeccccccccccccccc-cccccccccccccccccccccc-ccccccc
Confidence            9999999999999999999997643    44556677877777666654 5578888899999999988755 4455566


Q ss_pred             CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEE
Q 047260          591 HSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQT  667 (784)
Q Consensus       591 h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i  667 (784)
                      +...+..+.+.+... ++++++.|+.|++||+++.+++..+.   ..+.+++|+|++.+|++++.|+.|++||++....+
T Consensus       183 ~~~~~~~~~~~~~~~-~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~  261 (340)
T d1tbga_         183 HTGDVMSLSLAPDTR-LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL  261 (340)
T ss_dssp             CSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred             cceeEeeeccccccc-eeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccc
Confidence            778899999988766 78889999999999999988876654   67899999999999999999999999999999887


Q ss_pred             EEEe--CCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEE
Q 047260          668 HSLQ--GHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWN  743 (784)
Q Consensus       668 ~~l~--~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwd  743 (784)
                      ..+.  .+...|.+++|+|++++|++++++ .|+|||+.+++++.++.+|...|.+++|+|++.+|++++.||.|+|||
T Consensus       262 ~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         262 MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             cccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            7664  466789999999999999999865 999999999999999999999999999999999999999999999997

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=3.1e-29  Score=268.26  Aligned_cols=244  Identities=17%  Similarity=0.264  Sum_probs=201.3

Q ss_pred             EEeEeecCC-CceEEEEEcC--CCCEEEEEeCCCeEEEEECCCCcee--------eecCCCCCCeEEEEEccCCCEEEEE
Q 047260          499 EVGCIRSRN-SKVTCCHFSS--DGKLLASSGHDRKVVLWNMDTLQTE--------STPEDHKSVVTDVRFRPNSSQLATA  567 (784)
Q Consensus       499 ~i~~l~~H~-~~V~~l~fsp--dg~~Lasgs~Dg~I~IWd~~t~~~~--------~~l~~h~~~It~i~fspdg~~Latg  567 (784)
                      .+..+.+|. ..|++++|+|  ++.+||+|+.||+|+|||+...+..        ..+..|.++|.+++|++++++|+++
T Consensus        54 ~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~  133 (325)
T d1pgua1          54 PVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVV  133 (325)
T ss_dssp             SEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             ceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCcccee
Confidence            445566774 6799999998  6789999999999999998754322        2345688999999999999999887


Q ss_pred             eC--CCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEee------cCCeeEEE
Q 047260          568 SV--DKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHIT------KGGTAQVR  639 (784)
Q Consensus       568 s~--Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~------~~~v~~v~  639 (784)
                      +.  ++.+++|+.++++ ....+.+|...|.+++|+|++..++++++.|+.|++||....+.....      ...+.+++
T Consensus       134 ~~~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~  212 (325)
T d1pgua1         134 GEGRDNFGVFISWDSGN-SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVE  212 (325)
T ss_dssp             ECCSSCSEEEEETTTCC-EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEE
T ss_pred             eccccceEEEEeecccc-cceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEee
Confidence            65  6789999998866 677788999999999999999988999999999999999876655443      25589999


Q ss_pred             EecC-CCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEc---CCCCEEEEEeCC-eEEEEeCCCCceEEEeccC
Q 047260          640 FQPR-IGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWD---TNGDYLASVSQN-LVKVWSMASGECIQELSSN  714 (784)
Q Consensus       640 fsp~-~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~s---pdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~  714 (784)
                      |+|+ +.++++++.|+.|++||+++++.+..+.+|...+.++.|+   +++++|++++.| .|+|||+++++++..+..+
T Consensus       213 ~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~  292 (325)
T d1pgua1         213 FSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLD  292 (325)
T ss_dssp             ECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             eccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEec
Confidence            9997 5678889999999999999999999999888776655555   788999998855 9999999999999988766


Q ss_pred             CCc--eE--EEEEecCCCEEEEEECCCeEEEEEC
Q 047260          715 GNQ--FH--SCVFHPSYSTLLVVGGISSLELWNM  744 (784)
Q Consensus       715 ~~~--I~--sl~fspdg~~L~s~s~dg~I~Iwdl  744 (784)
                      ...  +.  ++.+.++ .+|++++.||.|+|||+
T Consensus       293 ~~~~~~~~~~~~~~~~-~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         293 KQQLGNQQVGVVATGN-GRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             TTCGGGCEEEEEEEET-TEEEEEETTSCEEEEET
T ss_pred             CCcccCeEEEEEECCC-CEEEEEECCCEEEEEEC
Confidence            554  33  3444443 47999999999999996

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.7e-29  Score=264.38  Aligned_cols=286  Identities=13%  Similarity=0.053  Sum_probs=214.4

Q ss_pred             eEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceee---ecCCCCCCeEEEEEccC-CCEEEEEeCCCeE
Q 047260          498 CEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTES---TPEDHKSVVTDVRFRPN-SSQLATASVDKSV  573 (784)
Q Consensus       498 ~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~---~l~~h~~~It~i~fspd-g~~Latgs~Dg~I  573 (784)
                      +.+....+|++.|++|+|+|++++||+|+.||+|+|||+.+.....   ...+|...|++++|+|+ +.+|++|+.||.|
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v   81 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI   81 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccce
Confidence            3566778999999999999999999999999999999997654332   22369999999999986 4589999999999


Q ss_pred             EEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe----eEEeec-----CCeeEEEEecCC
Q 047260          574 RLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFL----CTHITK-----GGTAQVRFQPRI  644 (784)
Q Consensus       574 ~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~----~~~~~~-----~~v~~v~fsp~~  644 (784)
                      ++|++............+........+.++ ...+++++.++.+++||++...    ......     .....+.+.+.+
T Consensus        82 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (342)
T d1yfqa_          82 LKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNS  160 (342)
T ss_dssp             EEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECS
T ss_pred             eeeecccccccccccccccccccccccccc-cccccccccccccceeeccccccceeeecccccccccceeeeeeeeccC
Confidence            999998876444444334344444444444 4588899999999999986422    111111     234566788889


Q ss_pred             CEEEEEECCCcEEEEECCCCeEE---EEEeCCCCCEEEEEEcC-CCCEEEEEeC-CeEEEEeCCCCce------EEE---
Q 047260          645 GQLLAAASDKVVSIFDIETDRQT---HSLQGHAELVNYICWDT-NGDYLASVSQ-NLVKVWSMASGEC------IQE---  710 (784)
Q Consensus       645 ~~Ll~~s~Dg~I~IwDl~t~~~i---~~l~~h~~~V~sl~~sp-dg~~Lasgsd-d~I~IwDl~t~~~------i~~---  710 (784)
                      ..+++++.|+.|++||++.....   .....+...+.++.+.+ ++..+++++. +.+.+|++.....      ...   
T Consensus       161 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~  240 (342)
T d1yfqa_         161 SRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRC  240 (342)
T ss_dssp             SEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEEC
T ss_pred             CceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeee
Confidence            99999999999999999876432   22334555666666554 6677777774 5999998865321      111   


Q ss_pred             ------eccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          711 ------LSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       711 ------l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                            ...|...|++++|+|++++|++|+.||.|+|||+.+++.+....+...+..++|+|++++|++++.|+.+++|.
T Consensus       241 ~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a~sdd~~~~~~  320 (342)
T d1yfqa_         241 HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNA  320 (342)
T ss_dssp             CCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECTHHHHCS
T ss_pred             eeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCCCCEEEEEEeCCCEEEEEEcCCcEEEee
Confidence                  12355678999999999999999999999999999998885554445566788889999999999888877663

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.97  E-value=1.4e-28  Score=257.31  Aligned_cols=239  Identities=14%  Similarity=0.160  Sum_probs=198.8

Q ss_pred             CceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEE
Q 047260          539 LQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQ  618 (784)
Q Consensus       539 ~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~  618 (784)
                      |+..+.+.+|...|++|+|+|++++|++|+.||+|++||+++++.......+|...|.+++|+|++.  +++++.|+.++
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~--~~~~~~d~~v~   79 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD--LFTVSWDDHLK   79 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC--EEEEETTTEEE
T ss_pred             CccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce--eecccceeeEE
Confidence            5677889999999999999999999999999999999999987744444457999999999999985  45567799999


Q ss_pred             EEeCCCC------eeEEeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEE
Q 047260          619 YWSINPF------LCTHITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASV  692 (784)
Q Consensus       619 iwDl~~~------~~~~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasg  692 (784)
                      +|+....      .....+...+.++.|++++..++++ .++.+.+|+...  .....  ....+.+++|+|++.+|+++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~-~~~~i~~~~~~~--~~~~~--~~~~~~~~~~s~~~~~l~~g  154 (299)
T d1nr0a2          80 VVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAA-CYKHIAIYSHGK--LTEVP--ISYNSSCVALSNDKQFVAVG  154 (299)
T ss_dssp             EECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEE-ESSEEEEEETTE--EEEEE--CSSCEEEEEECTTSCEEEEE
T ss_pred             EeccCCcccccccccccccccccccccccccccccccc-cccccccccccc--ccccc--cccccccccccccccccccc
Confidence            9998642      2233455778899999998866554 557899999543  22222  44568899999999999998


Q ss_pred             eCC-eEEEEeCCCCceEE-EeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE----EecccCCceEEEEEeC
Q 047260          693 SQN-LVKVWSMASGECIQ-ELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM----TIAAHENIISALAQSP  766 (784)
Q Consensus       693 sdd-~I~IwDl~t~~~i~-~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~----~~~~h~~~V~slafsp  766 (784)
                      +.+ .|++||+++++... ....|...|.+++|+|++.+|++++.|+.|++||+.++...    .+..|...|++++|+|
T Consensus       155 ~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~  234 (299)
T d1nr0a2         155 GQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSP  234 (299)
T ss_dssp             ETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            865 99999999887554 34567889999999999999999999999999999887655    4557899999999999


Q ss_pred             CCCEEEEEECCCcEEEeC
Q 047260          767 VTGMVASASHDSSVKLWK  784 (784)
Q Consensus       767 dg~~LaSgs~DG~V~IWd  784 (784)
                      ++.+|++|+.||.|+|||
T Consensus       235 ~~~~l~sgs~dg~i~iwd  252 (299)
T d1nr0a2         235 DNVRLATGSLDNSVIVWN  252 (299)
T ss_dssp             TSSEEEEEETTSCEEEEE
T ss_pred             cccceEEEcCCCEEEEEE
Confidence            999999999999999996

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=8e-29  Score=271.80  Aligned_cols=284  Identities=15%  Similarity=0.217  Sum_probs=216.6

Q ss_pred             eEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCce------eeecCCCCCCeEEEEEcc-------CCCEE
Q 047260          498 CEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQT------ESTPEDHKSVVTDVRFRP-------NSSQL  564 (784)
Q Consensus       498 ~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~------~~~l~~h~~~It~i~fsp-------dg~~L  564 (784)
                      ......++|.+.|+++++++  ++|+||+.|++|+|||..+...      ......|...+..+....       +..++
T Consensus         5 ~~~~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (393)
T d1sq9a_           5 ATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV   82 (393)
T ss_dssp             EEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred             eeeecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEE
Confidence            35567789999999999874  6999999999999999865432      222234555544333221       33568


Q ss_pred             EEEeCCCeEEEEcCCCCcceee---------eccCCCCCeEEEEEcCCC----CcEEEEEeCCCeEEEEeCCCCe-----
Q 047260          565 ATASVDKSVRLWDAANPNFCSQ---------AYTGHSSPIMSLDFHPKK----TDLFCFCDNDNEIQYWSINPFL-----  626 (784)
Q Consensus       565 atgs~Dg~I~IWdl~~~~~~~~---------~~~~h~~~V~sl~~sp~~----~~ll~sgs~dg~I~iwDl~~~~-----  626 (784)
                      ++++.||.|++|++........         ....+...+..++|.++.    ..++++++.||.|++|++....     
T Consensus        83 ~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~  162 (393)
T d1sq9a_          83 ATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS  162 (393)
T ss_dssp             EEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred             EEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccce
Confidence            8999999999999765332111         111244567888887764    3578889999999999974210     


Q ss_pred             ----------eEEe------ecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEe------CCCCCEEEEEEcC
Q 047260          627 ----------CTHI------TKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQ------GHAELVNYICWDT  684 (784)
Q Consensus       627 ----------~~~~------~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~------~h~~~V~sl~~sp  684 (784)
                                ....      ....+.+++|+|++ +|++++.|+.|+|||+++++.+..+.      +|...|++++|+|
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp  241 (393)
T d1sq9a_         163 LTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP  241 (393)
T ss_dssp             TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS
T ss_pred             eeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEccccc
Confidence                      0011      11347889999986 88899999999999999998876654      5889999999999


Q ss_pred             CCCEEEEEeCC----eEEEEeCCCCceEEEec-------------cCCCceEEEEEecCCCEEEEEECCCeEEEEECCCC
Q 047260          685 NGDYLASVSQN----LVKVWSMASGECIQELS-------------SNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAEN  747 (784)
Q Consensus       685 dg~~Lasgsdd----~I~IwDl~t~~~i~~l~-------------~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~  747 (784)
                      +|++|+++++|    .|++||+.+++++..+.             +|...|++++|+|++++|++++.|++|+|||+.++
T Consensus       242 dg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g  321 (393)
T d1sq9a_         242 QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK  321 (393)
T ss_dssp             STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT
T ss_pred             ccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCC
Confidence            99999999855    49999999999888774             68889999999999999999999999999999999


Q ss_pred             ceE-EecccCCc---------------------eEEEEEeCCC----------CEEEEEECCCcEEEeC
Q 047260          748 KSM-TIAAHENI---------------------ISALAQSPVT----------GMVASASHDSSVKLWK  784 (784)
Q Consensus       748 ~~~-~~~~h~~~---------------------V~slafspdg----------~~LaSgs~DG~V~IWd  784 (784)
                      +++ ++.+|.+.                     +.++.|.+.+          ..|++++.|+.|++|+
T Consensus       322 ~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~~~  390 (393)
T d1sq9a_         322 ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR  390 (393)
T ss_dssp             EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred             CEEEEECCcCCcccCCccEEEECCCCCEEEEcccceEEECccCceeccccCCCCEEEEEEcCCeEEEEe
Confidence            887 56667543                     4566666542          3588999999999985

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=7.1e-25  Score=229.65  Aligned_cols=260  Identities=21%  Similarity=0.350  Sum_probs=201.0

Q ss_pred             CceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCCCEEEEEeCCCe
Q 047260          451 DRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRK  530 (784)
Q Consensus       451 ~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~  530 (784)
                      ++++.+|+.|++|++|+....                          ..+.++.+|.+.|++++|+++  +|++|+.|+.
T Consensus        27 g~~l~sgs~Dg~i~vWd~~~~--------------------------~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~   78 (342)
T d2ovrb2          27 GNRIVSGSDDNTLKVWSAVTG--------------------------KCLRTLVGHTGGVWSSQMRDN--IIISGSTDRT   78 (342)
T ss_dssp             TTEEEEEETTSCEEEEETTTC--------------------------CEEEECCCCSSCEEEEEEETT--EEEEEETTSC
T ss_pred             CCEEEEEeCCCeEEEEECCCC--------------------------CEEEEEeCCCCCEEEEEeCCC--ccccceeccc
Confidence            345668999999999976322                          245678899999999999875  9999999999


Q ss_pred             EEEEECCCCceeeecCCCCCCeEEE--------------------------------------EEccCCCEEEEEeCCCe
Q 047260          531 VVLWNMDTLQTESTPEDHKSVVTDV--------------------------------------RFRPNSSQLATASVDKS  572 (784)
Q Consensus       531 I~IWd~~t~~~~~~l~~h~~~It~i--------------------------------------~fspdg~~Latgs~Dg~  572 (784)
                      +++|+............+...+...                                      .+......+++++.|+.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  158 (342)
T d2ovrb2          79 LKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFM  158 (342)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSC
T ss_pred             ccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCe
Confidence            9999988655444433332222221                                      22234456788888888


Q ss_pred             EEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEE
Q 047260          573 VRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLA  649 (784)
Q Consensus       573 I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~  649 (784)
                      |++||+.... ....+.+|...+..+.+.  +. .+++++.||.|++||++..+.+....   ..+.++.+  ++++|++
T Consensus       159 i~~~d~~~~~-~~~~~~~~~~~~~~~~~~--~~-~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s  232 (342)
T d2ovrb2         159 VKVWDPETET-CLHTLQGHTNRVYSLQFD--GI-HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVS  232 (342)
T ss_dssp             EEEEEGGGTE-EEEEECCCSSCEEEEEEC--SS-EEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEE
T ss_pred             EEEeecccce-eeEEEcCcccccccccCC--CC-EEEEEeCCCeEEEeecccceeeeEecccccceeEEec--CCCEEEE
Confidence            8888887655 566677888777777664  33 78899999999999999888776655   34455544  5579999


Q ss_pred             EECCCcEEEEECCCCeEEEEEeC---CCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEec-----cCCCceEE
Q 047260          650 AASDKVVSIFDIETDRQTHSLQG---HAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELS-----SNGNQFHS  720 (784)
Q Consensus       650 ~s~Dg~I~IwDl~t~~~i~~l~~---h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~-----~~~~~I~s  720 (784)
                      ++.|+.|++||+...+....+..   |...+.++.++  +.+++++++| .|+|||+++++++.++.     +|...|++
T Consensus       233 ~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~  310 (342)
T d2ovrb2         233 GNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWR  310 (342)
T ss_dssp             EETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEE
T ss_pred             EcCCCEEEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEE
Confidence            99999999999999988887765   45567776665  5688888865 99999999999998874     46678999


Q ss_pred             EEEecCCCEEEEEECCCe----EEEEECCC
Q 047260          721 CVFHPSYSTLLVVGGISS----LELWNMAE  746 (784)
Q Consensus       721 l~fspdg~~L~s~s~dg~----I~Iwdl~~  746 (784)
                      ++|+|++.+|++|+.||+    |++||++.
T Consensus       311 v~~s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         311 IRASNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             EEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             EEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence            999999999999999884    99999864

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2e-24  Score=221.00  Aligned_cols=256  Identities=21%  Similarity=0.367  Sum_probs=206.9

Q ss_pred             CceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCCCEEEEEeCCCe
Q 047260          451 DRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRK  530 (784)
Q Consensus       451 ~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~  530 (784)
                      ++++.+|+.|++|++|+....                          ..+.++++|.+.|++++|  ++++|++|+.|+.
T Consensus        25 ~~~l~sgs~Dg~i~vWd~~~~--------------------------~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~   76 (293)
T d1p22a2          25 DQKIVSGLRDNTIKIWDKNTL--------------------------ECKRILTGHTGSVLCLQY--DERVIITGSSDST   76 (293)
T ss_dssp             SSEEEEEESSSCEEEEESSSC--------------------------CEEEEECCCSSCEEEEEC--CSSEEEEEETTSC
T ss_pred             CCEEEEEeCCCeEEEEECCCC--------------------------cEEEEEecCCCCEeeeec--ccceeeccccccc
Confidence            456678999999999976322                          356778899999999987  5789999999999


Q ss_pred             EEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcc--eeeeccCCCCCeEEEEEcCCCCcEE
Q 047260          531 VVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNF--CSQAYTGHSSPIMSLDFHPKKTDLF  608 (784)
Q Consensus       531 I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~--~~~~~~~h~~~V~sl~~sp~~~~ll  608 (784)
                      |++|++..+........+.....  .+.+....++++..++.+++||......  ....+..|...|.++.+.+.   .+
T Consensus        77 i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~  151 (293)
T d1p22a2          77 VRVWDVNTGEMLNTLIHHCEAVL--HLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK---YI  151 (293)
T ss_dssp             EEEEESSSCCEEEEECCCCSCEE--EEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETT---EE
T ss_pred             ccccccccccccccccccccccc--cccccccceeecccccceeEeeccccccccccccccccccccccceeccc---cc
Confidence            99999999888777765554443  4445667899999999999999987542  34455678888988888754   67


Q ss_pred             EEEeCCCeEEEEeCCCCeeEEeecCCee-EEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCC
Q 047260          609 CFCDNDNEIQYWSINPFLCTHITKGGTA-QVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGD  687 (784)
Q Consensus       609 ~sgs~dg~I~iwDl~~~~~~~~~~~~v~-~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~  687 (784)
                      ++++.|+.|++||+++.+.+..+.+... ...+.+++..+++++.|+.|++||+++.+.+..+.++...+..  +++++.
T Consensus       152 ~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~  229 (293)
T d1p22a2         152 VSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNK  229 (293)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSS
T ss_pred             ccccCCCceeeecCCCCcEEEEEcccccccccccCCCCeEEEecCCCEEEEEecccceeeeeecccceeeee--ccccce
Confidence            7888999999999999888777664322 2234445678999999999999999999999999988888875  456788


Q ss_pred             EEEEEeCC-eEEEEeCCC---------CceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEE
Q 047260          688 YLASVSQN-LVKVWSMAS---------GECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWN  743 (784)
Q Consensus       688 ~Lasgsdd-~I~IwDl~t---------~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwd  743 (784)
                      +|++++.+ .|+|||+..         ..++..+.+|...|.+++|+  +.+|++++.||+|+|||
T Consensus       230 ~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         230 RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             EEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred             EEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence            89988855 999999743         35788899999999999995  55899999999999997

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.94  E-value=2.5e-26  Score=244.70  Aligned_cols=274  Identities=9%  Similarity=-0.029  Sum_probs=212.7

Q ss_pred             cCCCceEEEEEcCCCCEEEEEeCCC--eEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCc
Q 047260          505 SRNSKVTCCHFSSDGKLLASSGHDR--KVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPN  582 (784)
Q Consensus       505 ~H~~~V~~l~fspdg~~Lasgs~Dg--~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~  582 (784)
                      +|...|.+++|+|||++|++++.+.  .|++||+++++.. .+..|...|.+++|+|++++|++++.++.+++|++.+..
T Consensus        40 ~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~  118 (360)
T d1k32a3          40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK  118 (360)
T ss_dssp             SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-EeeCCCceEEeeeecccccccceeccccccccccccccc
Confidence            5899999999999999998876553  7999999987664 566899999999999999999999999999999999876


Q ss_pred             ceeeeccCCCCCeEEEEEcCCCCcEEEEEe---------CCCeEEEEeCCCCeeEEeec--CCeeEEEEecCCCEEEEEE
Q 047260          583 FCSQAYTGHSSPIMSLDFHPKKTDLFCFCD---------NDNEIQYWSINPFLCTHITK--GGTAQVRFQPRIGQLLAAA  651 (784)
Q Consensus       583 ~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs---------~dg~I~iwDl~~~~~~~~~~--~~v~~v~fsp~~~~Ll~~s  651 (784)
                       ....+..|...+.+++|+|++..++++..         .++.+++||+.+.+......  ..+..+.|+|+++.|++++
T Consensus       119 -~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s  197 (360)
T d1k32a3         119 -PTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLS  197 (360)
T ss_dssp             -EEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEE
T ss_pred             -eeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeecccccccccccccCCCCEEEEEe
Confidence             56677788899999999999987665543         24568999999877765544  5567789999999999999


Q ss_pred             CCCcEEEEECCCCe-------EEEEEeCCCCCEEEEEEcCCCCEEEEEeC---C---eEEEEeCCCCceEEEeccCCCce
Q 047260          652 SDKVVSIFDIETDR-------QTHSLQGHAELVNYICWDTNGDYLASVSQ---N---LVKVWSMASGECIQELSSNGNQF  718 (784)
Q Consensus       652 ~Dg~I~IwDl~t~~-------~i~~l~~h~~~V~sl~~spdg~~Lasgsd---d---~I~IwDl~t~~~i~~l~~~~~~I  718 (784)
                      .++.+.+||.....       .+..+..+...+..+.|++++..++++..   +   .+..+++..+.. ..+..+...+
T Consensus       198 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  276 (360)
T d1k32a3         198 YRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDY-RMIIPLESSI  276 (360)
T ss_dssp             SCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCE-EEEEECSSEE
T ss_pred             CCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCce-eEeeecCCCc
Confidence            99999999976543       23344455666666677787776665442   1   244444444432 3344444555


Q ss_pred             EEEEEecCC---CEEEEEECCCeEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          719 HSCVFHPSY---STLLVVGGISSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       719 ~sl~fspdg---~~L~s~s~dg~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      ..+.+...+   .++++++.++.|++||+.+++...   |.+.|.+++|+|||++|++++.||.|++||
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~---~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d  342 (360)
T d1k32a3         277 LIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE---VKNNLTDLRLSADRKTVMVRKDDGKIYTFP  342 (360)
T ss_dssp             EEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEE---EEEEEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             eEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEE---ecCCcCEEEECCCCCEEEEEECCCeEEEEE
Confidence            555555544   356777888999999999887654   345689999999999999999999999996

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=1.2e-24  Score=226.93  Aligned_cols=245  Identities=14%  Similarity=0.072  Sum_probs=188.0

Q ss_pred             ceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcc--eeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeE
Q 047260          540 QTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNF--CSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEI  617 (784)
Q Consensus       540 ~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~--~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I  617 (784)
                      +.+....+|.+.|++|+|+|++++||+|+.||+|+|||++....  ......+|..+|.+++|+|++..+|++|+.|+.|
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v   81 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI   81 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccce
Confidence            45677789999999999999999999999999999999976543  2233347999999999999988899999999999


Q ss_pred             EEEeCCCCeeEEeec----CCeeEEEEecCCCEEEEEECCCcEEEEECCCCeE----EEEEeCC--CCCEEEEEEcCCCC
Q 047260          618 QYWSINPFLCTHITK----GGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQ----THSLQGH--AELVNYICWDTNGD  687 (784)
Q Consensus       618 ~iwDl~~~~~~~~~~----~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~----i~~l~~h--~~~V~sl~~spdg~  687 (784)
                      ++|++..........    .......+.+....+++++.++.+++||++....    ......+  ......+.+.+++.
T Consensus        82 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (342)
T d1yfqa_          82 LKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSS  161 (342)
T ss_dssp             EEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSS
T ss_pred             eeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCC
Confidence            999998765554433    2334556677888999999999999999865432    2222222  23445667778888


Q ss_pred             EEEEEeCC-eEEEEeCCCCceE---EEeccCCCceEEEEEe-cCCCEEEEEECCCeEEEEECCCCceE------------
Q 047260          688 YLASVSQN-LVKVWSMASGECI---QELSSNGNQFHSCVFH-PSYSTLLVVGGISSLELWNMAENKSM------------  750 (784)
Q Consensus       688 ~Lasgsdd-~I~IwDl~t~~~i---~~l~~~~~~I~sl~fs-pdg~~L~s~s~dg~I~Iwdl~~~~~~------------  750 (784)
                      .+++++.+ .|++||+......   .........+.++.+. .++..+++++.||.+.+|++......            
T Consensus       162 ~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~  241 (342)
T d1yfqa_         162 RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH  241 (342)
T ss_dssp             EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECC
T ss_pred             ceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeee
Confidence            88888855 9999999876532   2233444455555554 56678999999999999998654321            


Q ss_pred             ----EecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          751 ----TIAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       751 ----~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                          ....|...|++|+|+|++++||||+.||.|+|||
T Consensus       242 ~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD  279 (342)
T d1yfqa_         242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWN  279 (342)
T ss_dssp             CCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred             eeccCCCcccccceeEEecCCccEEEEECCCCEEEEEE
Confidence                1235667899999999999999999999999997

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=1.2e-23  Score=230.26  Aligned_cols=274  Identities=13%  Similarity=0.144  Sum_probs=197.4

Q ss_pred             CCCCCcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEE
Q 047260          435 EGTGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCH  514 (784)
Q Consensus       435 ~~~~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~  514 (784)
                      .++..-+.++.+.   .+++.++|.|+++++|+.......                    .+.........|...+..+.
T Consensus        11 ~~H~~~I~~v~~~---~~~l~S~S~D~~iriWd~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~   67 (393)
T d1sq9a_          11 KAHDADIFSVSAC---NSFTVSCSGDGYLKVWDNKLLDNE--------------------NPKDKSYSHFVHKSGLHHVD   67 (393)
T ss_dssp             SCSSSCEEEEEEC---SSEEEEEETTSEEEEEESBCCTTC--------------------CGGGGEEEEECCTTCEEEEE
T ss_pred             CcccCccEEEEEe---CCEEEEEECCCeEEEEECCCCCCC--------------------cccceeEeeeeccCCceEee
Confidence            3444444444432   245667899999999975332211                    11112222333444443332


Q ss_pred             E------cC-CCCEEEEEeCCCeEEEEECCCCceeee----------cCCCCCCeEEEEEccC-----CCEEEEEeCCCe
Q 047260          515 F------SS-DGKLLASSGHDRKVVLWNMDTLQTEST----------PEDHKSVVTDVRFRPN-----SSQLATASVDKS  572 (784)
Q Consensus       515 f------sp-dg~~Lasgs~Dg~I~IWd~~t~~~~~~----------l~~h~~~It~i~fspd-----g~~Latgs~Dg~  572 (784)
                      +      +. ++.++++++.||.|++|++........          ...+...+..++|.++     +.++++++.||+
T Consensus        68 ~~~~~~~~~~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~  147 (393)
T d1sq9a_          68 VLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGT  147 (393)
T ss_dssp             EEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSC
T ss_pred             eEeeeccCCCCCcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCc
Confidence            2      21 335788999999999999754322111          1234566888888875     468999999999


Q ss_pred             EEEEcCCCCcc-----------------eeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEee----
Q 047260          573 VRLWDAANPNF-----------------CSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHIT----  631 (784)
Q Consensus       573 I~IWdl~~~~~-----------------~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~----  631 (784)
                      |++|++.....                 .......+...+.+++|+|++  +|++|+.|+.|++||+.+.+.+..+    
T Consensus       148 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg--~lasgs~Dg~i~iwd~~~~~~~~~~~~~~  225 (393)
T d1sq9a_         148 TYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQH  225 (393)
T ss_dssp             EEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC
T ss_pred             EEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC--EEEEEeCCCcEEEEeeccccccccccccc
Confidence            99999853211                 111223455678999999986  7889999999999999987765433    


Q ss_pred             -----cCCeeEEEEecCCCEEEEEECCC---cEEEEECCCCeEEEEEe-------------CCCCCEEEEEEcCCCCEEE
Q 047260          632 -----KGGTAQVRFQPRIGQLLAAASDK---VVSIFDIETDRQTHSLQ-------------GHAELVNYICWDTNGDYLA  690 (784)
Q Consensus       632 -----~~~v~~v~fsp~~~~Ll~~s~Dg---~I~IwDl~t~~~i~~l~-------------~h~~~V~sl~~spdg~~La  690 (784)
                           ...|.+++|+|++.+|++++.|+   .|++||+++++.+..+.             +|...|++++|+|++++|+
T Consensus       226 ~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~  305 (393)
T d1sq9a_         226 SMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLC  305 (393)
T ss_dssp             ---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEE
T ss_pred             ccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeE
Confidence                 35789999999999999999886   49999999998887764             7999999999999999999


Q ss_pred             EEeCC-eEEEEeCCCCceEEEeccCCCceE----EEEEecCCCEEEEE
Q 047260          691 SVSQN-LVKVWSMASGECIQELSSNGNQFH----SCVFHPSYSTLLVV  733 (784)
Q Consensus       691 sgsdd-~I~IwDl~t~~~i~~l~~~~~~I~----sl~fspdg~~L~s~  733 (784)
                      +++.| +|+|||+.+++++.++.+|...|.    .++|++++..++++
T Consensus       306 S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~  353 (393)
T d1sq9a_         306 SAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEP  353 (393)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSC
T ss_pred             EECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEEEc
Confidence            99966 999999999999999999987664    46788887766533

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=6.8e-24  Score=220.21  Aligned_cols=260  Identities=13%  Similarity=0.151  Sum_probs=200.6

Q ss_pred             CCCCCcccccccccCCCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEE
Q 047260          435 EGTGSLASASNLLEDIDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCH  514 (784)
Q Consensus       435 ~~~~~~~ss~~~~~~~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~  514 (784)
                      .|+...+.++.+.+     +.+|+.|++|++|+...                               ...+|...|.+++
T Consensus        10 ~gH~~~I~~l~~s~-----l~sgs~Dg~v~~Wd~~~-------------------------------~~~~h~~~V~~~~   53 (287)
T d1pgua2          10 SGHNKGITALTVNP-----LISGSYDGRIMEWSSSS-------------------------------MHQDHSNLIVSLD   53 (287)
T ss_dssp             CCCSSCEEEEETTT-----TEEEETTSCEEETTTTE-------------------------------EECCCCSCEEEEE
T ss_pred             CCCCCceEEEEECc-----EEEEeCCCeEEEEECCC-------------------------------CCCCCCCCEEEEE
Confidence            45555566666643     45799999999995421                               1246999999999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCC
Q 047260          515 FSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSP  594 (784)
Q Consensus       515 fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~  594 (784)
                      |++++ .+++++.|++|++|++...+       +...+.++.+++++..++++ .++.+.+|+..++. ....+.. ...
T Consensus        54 ~~~~~-~~~s~s~D~~v~~w~~~~~~-------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~-~~~  122 (287)
T d1pgua2          54 NSKAQ-EYSSISWDDTLKVNGITKHE-------FGSQPKVASANNDGFTAVLT-NDDDLLILQSFTGD-IIKSVRL-NSP  122 (287)
T ss_dssp             CCSTT-CCEEEETTTEEEETTEEEEE-------CSSCEEEEEECSSSEEEEEE-TTSEEEEEETTTCC-EEEEEEC-SSC
T ss_pred             ecCCC-eEEEEeeccccccccccccc-------cccceeeeeeccCCceEEEe-ecccceeeecccee-eeeeccc-cce
Confidence            99765 57899999999999976422       33467888999888666665 56678889888766 3444332 334


Q ss_pred             eEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEe----ecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEE-
Q 047260          595 IMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHI----TKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHS-  669 (784)
Q Consensus       595 V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~----~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~-  669 (784)
                      +.  ++++++..+++++..++.|++|++........    +...+.+++|+|++.+|++++.||.|++||+.+++.... 
T Consensus       123 ~~--~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~  200 (287)
T d1pgua2         123 GS--AVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSR  200 (287)
T ss_dssp             EE--EEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECC
T ss_pred             ee--eeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeeccccccccc
Confidence            44  45566665666666567899999986554433    336789999999999999999999999999999876654 


Q ss_pred             EeCCCCCEEEEEEcCC----------CCEEEEEeCC-eEEEEeCCC-CceEEEeccCCCceEEEEEecCCCEEEEEECCC
Q 047260          670 LQGHAELVNYICWDTN----------GDYLASVSQN-LVKVWSMAS-GECIQELSSNGNQFHSCVFHPSYSTLLVVGGIS  737 (784)
Q Consensus       670 l~~h~~~V~sl~~spd----------g~~Lasgsdd-~I~IwDl~t-~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg  737 (784)
                      +..|...|.+++|+|.          +.+|++++.| .|+|||+++ .+.+..+.+|...|.+++|+|++ .|++++.|+
T Consensus       201 ~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~  279 (287)
T d1pgua2         201 WAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADA  279 (287)
T ss_dssp             SCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTS
T ss_pred             ccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCC
Confidence            5679999999999874          4689998865 999999977 56777888999999999999986 699999999


Q ss_pred             eEEEEEC
Q 047260          738 SLELWNM  744 (784)
Q Consensus       738 ~I~Iwdl  744 (784)
                      .|++|++
T Consensus       280 ~v~iW~i  286 (287)
T d1pgua2         280 CIKRWNV  286 (287)
T ss_dssp             CEEEEEE
T ss_pred             eEEEEEE
Confidence            9999996

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.92  E-value=4.4e-22  Score=206.15  Aligned_cols=257  Identities=12%  Similarity=0.119  Sum_probs=212.4

Q ss_pred             EEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEE-EEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEc
Q 047260          523 ASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLA-TASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFH  601 (784)
Q Consensus       523 asgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~La-tgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~s  601 (784)
                      ++++.|++|.|||+++++.+.++.. ...+..++|+|||++|+ +++.++.|++||+.+++ ....+..+. .+..+.|+
T Consensus         6 V~~~~~~~v~v~D~~t~~~~~~i~~-g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~-~~~~~~~~~-~~~~~~~~   82 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKVTATIPV-GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN-VIATVPAGS-SPQGVAVS   82 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTE-EEEEEECSS-SEEEEEEC
T ss_pred             EEECCCCEEEEEECCCCeEEEEEEC-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCc-eeeeeeccc-cccccccc
Confidence            4567889999999999999988864 45678999999999875 56678999999999876 455555554 57899999


Q ss_pred             CCCCcEEEEEeCCCeEEEEeCCCCeeEEeec--CCeeEEEEecCCCEEEEEEC-CCcEEEEECCCCeEEEEEeCCCCCEE
Q 047260          602 PKKTDLFCFCDNDNEIQYWSINPFLCTHITK--GGTAQVRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHSLQGHAELVN  678 (784)
Q Consensus       602 p~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~--~~v~~v~fsp~~~~Ll~~s~-Dg~I~IwDl~t~~~i~~l~~h~~~V~  678 (784)
                      +++..+++++..++.+.+|+..+.+......  ....++.|+|++..+++++. ++.+.+|+..+.+.+..+.. ...+.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  161 (301)
T d1l0qa2          83 PDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV-GRSPK  161 (301)
T ss_dssp             TTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-CSSEE
T ss_pred             cccccccccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeeccc-CCCce
Confidence            9999899999999999999999887776654  55678999999999877665 78899999999998888874 45678


Q ss_pred             EEEEcCCCCEEEEEeCC--eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECC---CeEEEEECCCCceEEec
Q 047260          679 YICWDTNGDYLASVSQN--LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGI---SSLELWNMAENKSMTIA  753 (784)
Q Consensus       679 sl~~spdg~~Lasgsdd--~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~d---g~I~Iwdl~~~~~~~~~  753 (784)
                      ++.+++++.+++++..+  .+.+|+....+....+..+ ..+..++|++++..+++++.+   +.|++||+.+++.....
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~  240 (301)
T d1l0qa2         162 GIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVE-AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARI  240 (301)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEE
T ss_pred             EEEeeccccceeeecccccccccccccceeeeeccccc-CCcceeeccccccccccccccceeeeeeeeecCCCeEEEEE
Confidence            89999999988887744  8888988888777766554 557889999999988776544   58999999999888655


Q ss_pred             ccCCceEEEEEeCCCCEE-EEEECCCcEEEeC
Q 047260          754 AHENIISALAQSPVTGMV-ASASHDSSVKLWK  784 (784)
Q Consensus       754 ~h~~~V~slafspdg~~L-aSgs~DG~V~IWd  784 (784)
                      .+...+.+++|+|||++| ++++.|+.|+|||
T Consensus       241 ~~~~~~~~va~spdg~~l~va~~~~~~i~v~D  272 (301)
T d1l0qa2         241 PVGPDPAGIAVTPDGKKVYVALSFCNTVSVID  272 (301)
T ss_dssp             ECCSSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             cCCCCEEEEEEeCCCCEEEEEECCCCeEEEEE
Confidence            566678999999999976 5667799999997

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.91  E-value=6.5e-23  Score=227.22  Aligned_cols=303  Identities=10%  Similarity=0.027  Sum_probs=219.0

Q ss_pred             EeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEE
Q 047260          454 ADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVL  533 (784)
Q Consensus       454 l~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~I  533 (784)
                      +.+.+.|+.|.+|+....                          ..+.++..|. .+..++|||||++|++++.|+.|++
T Consensus        35 ~V~~~~dg~v~vwD~~t~--------------------------~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~v   87 (426)
T d1hzua2          35 SVTLRDAGQIALVDGDSK--------------------------KIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDM   87 (426)
T ss_dssp             EEEETTTTEEEEEETTTC--------------------------SEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEE
T ss_pred             EEEEcCCCEEEEEECCCC--------------------------cEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEE
Confidence            345778899999976322                          3556677664 5999999999999999999999999


Q ss_pred             EECCCCceeee-----cCCCCCCeEEEEEccCCCEEEEE-eCCCeEEEEcCCCCcceeeeccCC-----------CCCeE
Q 047260          534 WNMDTLQTEST-----PEDHKSVVTDVRFRPNSSQLATA-SVDKSVRLWDAANPNFCSQAYTGH-----------SSPIM  596 (784)
Q Consensus       534 Wd~~t~~~~~~-----l~~h~~~It~i~fspdg~~Latg-s~Dg~I~IWdl~~~~~~~~~~~~h-----------~~~V~  596 (784)
                      ||+.+++....     ..+|...+.+++|+|||++|+++ ..++.+++||..+.. +......|           .....
T Consensus        88 wd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  166 (426)
T d1hzua2          88 IDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE-PKQIVSTRGMTVDTQTYHPEPRVA  166 (426)
T ss_dssp             EETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC-EEEEEECCEECSSSCCEESCCCEE
T ss_pred             EEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccc-eeEEeeccCCCccceeecCCCcee
Confidence            99998874432     23566777888889999987554 578999999999876 44333333           33455


Q ss_pred             EEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeE----EeecCCeeEEEEecCCCEEEEEEC-CCcEEEEECCCCeEEEEEe
Q 047260          597 SLDFHPKKTDLFCFCDNDNEIQYWSINPFLCT----HITKGGTAQVRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHSLQ  671 (784)
Q Consensus       597 sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~----~~~~~~v~~v~fsp~~~~Ll~~s~-Dg~I~IwDl~t~~~i~~l~  671 (784)
                      .+.+++++..++++....+.+.+++.......    ......+..+.|+|++++++++.. +..+.++|..+++.+..+.
T Consensus       167 ~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~  246 (426)
T d1hzua2         167 AIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVD  246 (426)
T ss_dssp             EEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEE
T ss_pred             EEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEec
Confidence            66677777766666666677777766543321    223356788999999999988886 5789999999998887775


Q ss_pred             CC--CCCEEEEEEcCCCC--EEEEEe--CCeEEEEeCCC-------CceEEEeccCCCceEEEEEecCCCEEEEE-----
Q 047260          672 GH--AELVNYICWDTNGD--YLASVS--QNLVKVWSMAS-------GECIQELSSNGNQFHSCVFHPSYSTLLVV-----  733 (784)
Q Consensus       672 ~h--~~~V~sl~~spdg~--~Lasgs--dd~I~IwDl~t-------~~~i~~l~~~~~~I~sl~fspdg~~L~s~-----  733 (784)
                      ..  ......+.+...+.  ..+...  ++.+.+|+...       ++.+.++.+|...+..++|+|++++|++.     
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~  326 (426)
T d1hzua2         247 VGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNP  326 (426)
T ss_dssp             CSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCS
T ss_pred             cCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCC
Confidence            32  22223333333322  222222  34788887654       47888999999999999999999999963     


Q ss_pred             --ECCCeEEEEECCCCceE-E---------ecccCCceEEEEEeCCCCEEEEE-----ECCCcEEEeC
Q 047260          734 --GGISSLELWNMAENKSM-T---------IAAHENIISALAQSPVTGMVASA-----SHDSSVKLWK  784 (784)
Q Consensus       734 --s~dg~I~Iwdl~~~~~~-~---------~~~h~~~V~slafspdg~~LaSg-----s~DG~V~IWd  784 (784)
                        ..+++|+|||+.+++.. +         +..|...|.+++|+|||++|+..     +.||.|+|||
T Consensus       327 s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D  394 (426)
T d1hzua2         327 DARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVD  394 (426)
T ss_dssp             SHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEE
T ss_pred             CcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEE
Confidence              34679999999988654 2         23566779999999999976443     3578899997

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.90  E-value=9.4e-23  Score=227.21  Aligned_cols=300  Identities=10%  Similarity=0.014  Sum_probs=212.8

Q ss_pred             EeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEE
Q 047260          454 ADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVL  533 (784)
Q Consensus       454 l~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~I  533 (784)
                      +.+-+.|+.|.+|+....                          ..+..+..|. .+..++|||||++|++++.|+.|++
T Consensus        35 ~v~~~d~g~v~v~D~~t~--------------------------~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~   87 (432)
T d1qksa2          35 SVTLRDAGQIALIDGSTY--------------------------EIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNM   87 (432)
T ss_dssp             EEEETTTTEEEEEETTTC--------------------------CEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEE
T ss_pred             EEEEcCCCEEEEEECCCC--------------------------cEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEE
Confidence            356778888988866322                          3456666664 6999999999999999999999999


Q ss_pred             EECCCCcee--ee---cCCCCCCeEEEEEccCCCEE-EEEeCCCeEEEEcCCCCcceeeecc-----------CCCCCeE
Q 047260          534 WNMDTLQTE--ST---PEDHKSVVTDVRFRPNSSQL-ATASVDKSVRLWDAANPNFCSQAYT-----------GHSSPIM  596 (784)
Q Consensus       534 Wd~~t~~~~--~~---l~~h~~~It~i~fspdg~~L-atgs~Dg~I~IWdl~~~~~~~~~~~-----------~h~~~V~  596 (784)
                      ||+.+++..  ..   ...|.+.+.+..|+|||++| ++++.+++|+|||..+++ +...+.           .+.....
T Consensus        88 ~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~-~~~~~~~~~~~~~~~~~~~~~~~~  166 (432)
T d1qksa2          88 IDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE-PKKIQSTRGMTYDEQEYHPEPRVA  166 (432)
T ss_dssp             EETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCC-EEEEEECCEECTTTCCEESCCCEE
T ss_pred             EEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCcccc-ceeeeccCCccccceeccCCCcee
Confidence            999876632  22   33566667777888999986 678889999999999876 333322           2445677


Q ss_pred             EEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEE--e--ecCCeeEEEEecCCCEEEEEEC-CCcEEEEECCCCeEEEEEe
Q 047260          597 SLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTH--I--TKGGTAQVRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHSLQ  671 (784)
Q Consensus       597 sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~--~--~~~~v~~v~fsp~~~~Ll~~s~-Dg~I~IwDl~t~~~i~~l~  671 (784)
                      .+.+++++..++++...++.|.+||....+...  .  .......+.|+|+++++++++. ++.|.++|..+.+.+..+.
T Consensus       167 ~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~  246 (432)
T d1qksa2         167 AILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIED  246 (432)
T ss_dssp             EEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred             EEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEec
Confidence            889999999888999999999999998755432  2  2245788999999999888887 5789999999988877764


Q ss_pred             C-----CCCCEEEEEEcCCCCEEEEEe--CCeEEEEeCCCC-------ceEEEeccCCCce-------------------
Q 047260          672 G-----HAELVNYICWDTNGDYLASVS--QNLVKVWSMASG-------ECIQELSSNGNQF-------------------  718 (784)
Q Consensus       672 ~-----h~~~V~sl~~spdg~~Lasgs--dd~I~IwDl~t~-------~~i~~l~~~~~~I-------------------  718 (784)
                      .     |........+...+...++..  ++.|.+|+....       +....+..+....                   
T Consensus       247 ~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~  326 (432)
T d1qksa2         247 TGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLN  326 (432)
T ss_dssp             CSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTC
T ss_pred             cCccccccCcccceecCCCCceecccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCC
Confidence            2     334445555555555555554  448888876543       2233332221111                   


Q ss_pred             ------EEEEEecCCCEEEEEECCCeEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEE-----CCCcEEEeC
Q 047260          719 ------HSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASAS-----HDSSVKLWK  784 (784)
Q Consensus       719 ------~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs-----~DG~V~IWd  784 (784)
                            ..+++ ||++.+++++.|+.+++|++.++.  .+..|...|.+++|+|||++|+.+.     .||.|+|||
T Consensus       327 ~~~~~~~sv~v-pDg~~la~~s~d~~~k~w~~~~~~--~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D  400 (432)
T d1qksa2         327 PEAEISGSVAV-FDIKAMTGDGSDPEFKTLPIAEWA--GITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD  400 (432)
T ss_dssp             SSHHHHTCEEE-EEGGGCCCSSSCCCEEEECHHHHH--TCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred             CCCCeeeEEEE-EechhhcccccCCceEeccccccc--ccCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEE
Confidence                  12222 566666666667777777664432  2336777899999999999776554     468899997

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.88  E-value=2.9e-22  Score=212.81  Aligned_cols=266  Identities=10%  Similarity=0.019  Sum_probs=206.5

Q ss_pred             EEEEcC-CCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCC--eEEEEcCCCCcceeeec
Q 047260          512 CCHFSS-DGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDK--SVRLWDAANPNFCSQAY  588 (784)
Q Consensus       512 ~l~fsp-dg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg--~I~IWdl~~~~~~~~~~  588 (784)
                      .-.||| ||+++|+++ +|.|+|||++++..+..  .|...|.+++|+|||++|++++.+.  .|++||++++.  ...+
T Consensus         7 ~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~--~~~~   81 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK--AEKF   81 (360)
T ss_dssp             EEEEEECGGGCEEEEE-TTEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCC--EEEC
T ss_pred             cccccCCCCCEEEEEE-CCeEEEEECCCCcEEEc--cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCc--EEEe
Confidence            457999 999999876 57999999998776654  6999999999999999998877654  79999998865  4456


Q ss_pred             cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEEEEC----------CCc
Q 047260          589 TGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLAAAS----------DKV  655 (784)
Q Consensus       589 ~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~~s~----------Dg~  655 (784)
                      ..|...|.+++|+|++. .+++++.++.+++|++..........   ..+.+++|+|++.+|+.+..          ++.
T Consensus        82 ~~~~~~v~~~~~spdg~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~  160 (360)
T d1k32a3          82 EENLGNVFAMGVDRNGK-FAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQA  160 (360)
T ss_dssp             CCCCCSEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEE
T ss_pred             eCCCceEEeeeeccccc-ccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccc
Confidence            78999999999999988 77788889999999999877665544   56788999999999987653          356


Q ss_pred             EEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCc-------eEEEeccCCCceEEEEEecCC
Q 047260          656 VSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGE-------CIQELSSNGNQFHSCVFHPSY  727 (784)
Q Consensus       656 I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~-------~i~~l~~~~~~I~sl~fspdg  727 (784)
                      +++||+.+++... +..+...+..++|+|+|++|++++.+ .+++||.....       .+..+..+...+..+.|++++
T Consensus       161 ~~v~d~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  239 (360)
T d1k32a3         161 IHVYDMEGRKIFA-ATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRS  239 (360)
T ss_dssp             EEEEETTTTEEEE-CSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGG
T ss_pred             eeeeccccCceee-ecccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCc
Confidence            9999999887654 44477888999999999999998865 89999976543       233444455555566777777


Q ss_pred             CEEEEEECC-----CeEEEEECCCCceEEecccCCceEEEEEeCCCC---EEEEEECCCcEEEeC
Q 047260          728 STLLVVGGI-----SSLELWNMAENKSMTIAAHENIISALAQSPVTG---MVASASHDSSVKLWK  784 (784)
Q Consensus       728 ~~L~s~s~d-----g~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~---~LaSgs~DG~V~IWd  784 (784)
                      ..++++..+     ..+..+++..+....+..+.+.+..+.+...+.   ++++++.|+.|++||
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d  304 (360)
T d1k32a3         240 MTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYD  304 (360)
T ss_dssp             GSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEE
T ss_pred             CcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEE
Confidence            766655443     235555666666666777777777777766554   678888899999996

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.88  E-value=6.4e-20  Score=189.61  Aligned_cols=264  Identities=12%  Similarity=0.142  Sum_probs=209.1

Q ss_pred             ccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCCCEEE-EEeCCCeEEEE
Q 047260          456 VGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLA-SSGHDRKVVLW  534 (784)
Q Consensus       456 ~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~~La-sgs~Dg~I~IW  534 (784)
                      +++.|++|.+|+....                          +.+.++. ....+..++|+|||++|+ +++.++.|++|
T Consensus         7 ~~~~~~~v~v~D~~t~--------------------------~~~~~i~-~g~~p~~va~spdG~~l~v~~~~~~~i~v~   59 (301)
T d1l0qa2           7 ANSESDNISVIDVTSN--------------------------KVTATIP-VGSNPMGAVISPDGTKVYVANAHSNDVSII   59 (301)
T ss_dssp             EETTTTEEEEEETTTT--------------------------EEEEEEE-CSSSEEEEEECTTSSEEEEEEGGGTEEEEE
T ss_pred             EECCCCEEEEEECCCC--------------------------eEEEEEE-CCCCceEEEEeCCCCEEEEEECCCCEEEEE
Confidence            4677888999976322                          1233333 234578999999999875 56678999999


Q ss_pred             ECCCCceeeecCCCCCCeEEEEEccCCCEEEE-EeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeC
Q 047260          535 NMDTLQTESTPEDHKSVVTDVRFRPNSSQLAT-ASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDN  613 (784)
Q Consensus       535 d~~t~~~~~~l~~h~~~It~i~fspdg~~Lat-gs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~  613 (784)
                      |+.+++.+..+..|. .+..+.|++++..+++ +..++.+.+|+..+++ ....+. +...+.++.|+|++..+++++..
T Consensus        60 d~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~dg~~~~~~~~~  136 (301)
T d1l0qa2          60 DTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNT-VAGTVK-TGKSPLGLALSPDGKKLYVTNNG  136 (301)
T ss_dssp             ETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTE-EEEEEE-CSSSEEEEEECTTSSEEEEEETT
T ss_pred             ECCCCceeeeeeccc-cccccccccccccccccccccceeeecccccce-eeeecc-ccccceEEEeecCCCeeeeeecc
Confidence            999999999887665 5689999999986655 5567899999998866 444443 44568899999999988899999


Q ss_pred             CCeEEEEeCCCCeeEEeec--CCeeEEEEecCCCEEEEEECC-CcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEE
Q 047260          614 DNEIQYWSINPFLCTHITK--GGTAQVRFQPRIGQLLAAASD-KVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLA  690 (784)
Q Consensus       614 dg~I~iwDl~~~~~~~~~~--~~v~~v~fsp~~~~Ll~~s~D-g~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~La  690 (784)
                      ++.+.+|+..+........  .....+.+++++..+++++.+ +.+.+|+....+....+. ....+..++|++++..++
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~  215 (301)
T d1l0qa2         137 DKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAY  215 (301)
T ss_dssp             TTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEE
T ss_pred             ccceeeeeccccceeeecccCCCceEEEeeccccceeeecccccccccccccceeeeeccc-ccCCcceeeccccccccc
Confidence            9999999999988776654  557889999999999988875 677788888777776665 445678899999999876


Q ss_pred             EEe-C---CeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEE-EEECCCeEEEEECCCCceEE
Q 047260          691 SVS-Q---NLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLL-VVGGISSLELWNMAENKSMT  751 (784)
Q Consensus       691 sgs-d---d~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~-s~s~dg~I~Iwdl~~~~~~~  751 (784)
                      ++. +   +.|++||+.+++++..+..+ ..+.+++|+|++++|+ +++.++.|++||+.+++.+.
T Consensus       216 v~~~~~~~~~v~v~D~~t~~~~~~~~~~-~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~  280 (301)
T d1l0qa2         216 VTNVDKYFNTVSMIDTGTNKITARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITA  280 (301)
T ss_dssp             EEEECSSCCEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             cccccceeeeeeeeecCCCeEEEEEcCC-CCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEE
Confidence            654 2   37999999999998888654 5679999999999875 55668999999999998773

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.87  E-value=5.1e-21  Score=200.77  Aligned_cols=259  Identities=9%  Similarity=0.067  Sum_probs=199.0

Q ss_pred             CEEEEEeCCCeEEEEECCCCceeeecCC--CCCCeEEEEEccCCCEEE-EEeCCCeEEEEcCCCCcceeeeccCCC----
Q 047260          520 KLLASSGHDRKVVLWNMDTLQTESTPED--HKSVVTDVRFRPNSSQLA-TASVDKSVRLWDAANPNFCSQAYTGHS----  592 (784)
Q Consensus       520 ~~Lasgs~Dg~I~IWd~~t~~~~~~l~~--h~~~It~i~fspdg~~La-tgs~Dg~I~IWdl~~~~~~~~~~~~h~----  592 (784)
                      +||++++.|++|+|||+.+++.+..+..  +...+.+++|+|||++++ +++.++.|.+||+.+++ ....+..+.    
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~-~~~~~~~~~~~~~   80 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGE-TLGRIDLSTPEER   80 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCC-EEEEEECCBTTEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCc-EEEEEecCCCccc
Confidence            5899999999999999999999988864  345688999999999874 56789999999999977 334333332    


Q ss_pred             -CCeEEEEEcCCCCcEEEEEe-----------CCCeEEEEeCCCCeeEEeec--CCeeEEEEecCCCEEEEEECCCcEEE
Q 047260          593 -SPIMSLDFHPKKTDLFCFCD-----------NDNEIQYWSINPFLCTHITK--GGTAQVRFQPRIGQLLAAASDKVVSI  658 (784)
Q Consensus       593 -~~V~sl~~sp~~~~ll~sgs-----------~dg~I~iwDl~~~~~~~~~~--~~v~~v~fsp~~~~Ll~~s~Dg~I~I  658 (784)
                       ..+..++|+|++..+++++.           .+..+.+||..+......+.  ..+..+.|+|++.++++++  +.+.+
T Consensus        81 ~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~--~~~~~  158 (337)
T d1pbyb_          81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLG--RDLHV  158 (337)
T ss_dssp             EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEES--SSEEE
T ss_pred             ccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEc--CCcce
Confidence             34567899999987766553           46789999999988776654  5577899999999999876  45788


Q ss_pred             EECCCCeEEEEEeCCCCCEEEEEEcCCCCE----------EE----EE-----------eCCeEEEEeCCCCceEE-Eec
Q 047260          659 FDIETDRQTHSLQGHAELVNYICWDTNGDY----------LA----SV-----------SQNLVKVWSMASGECIQ-ELS  712 (784)
Q Consensus       659 wDl~t~~~i~~l~~h~~~V~sl~~spdg~~----------La----sg-----------sdd~I~IwDl~t~~~i~-~l~  712 (784)
                      ||..+++....+..+... ....+.+++..          +.    ..           .+..+.+||+.++.... .+.
T Consensus       159 ~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (337)
T d1pbyb_         159 MDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVR  237 (337)
T ss_dssp             EETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEE
T ss_pred             eeeecCcEEEEeecCCcc-ccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEec
Confidence            999999888877543221 11111121110          00    11           12268999999887654 355


Q ss_pred             cCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          713 SNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       713 ~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      .+...+..+.+++++.+++++  ++.|++||+.+++.+....+...+.+++|+|||++|++++.||.|+|||
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D  307 (337)
T d1pbyb_         238 IMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYD  307 (337)
T ss_dssp             ECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEE
T ss_pred             CCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence            667778889999999987766  4789999999999987777888899999999999999999999999997

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.86  E-value=4.6e-21  Score=201.89  Aligned_cols=267  Identities=8%  Similarity=0.020  Sum_probs=197.5

Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCceeeecC-CCCCCeEEEEEccCCCEEE-EEeCCCeEEEEcCCCCcceeeeccC
Q 047260          513 CHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPE-DHKSVVTDVRFRPNSSQLA-TASVDKSVRLWDAANPNFCSQAYTG  590 (784)
Q Consensus       513 l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~-~h~~~It~i~fspdg~~La-tgs~Dg~I~IWdl~~~~~~~~~~~~  590 (784)
                      ++|+++++||++++.|+.|.|||+++++.+.++. .|...+.+++|+|||++++ +++.++.|++||+.+++........
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~   81 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS   81 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence            4689999999999999999999999999998876 4667789999999999875 5557899999999987643322211


Q ss_pred             -----CCCCeEEEEEcCCCCcEEEEEe-----------CCCeEEEEeCCCCeeEEee-----cCCeeEEEEecCCCEEEE
Q 047260          591 -----HSSPIMSLDFHPKKTDLFCFCD-----------NDNEIQYWSINPFLCTHIT-----KGGTAQVRFQPRIGQLLA  649 (784)
Q Consensus       591 -----h~~~V~sl~~sp~~~~ll~sgs-----------~dg~I~iwDl~~~~~~~~~-----~~~v~~v~fsp~~~~Ll~  649 (784)
                           +...+..++|+|++..++++..           .+..+.+||..+.+.....     ...+..+.+.+++..++ 
T Consensus        82 ~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  160 (346)
T d1jmxb_          82 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYV-  160 (346)
T ss_dssp             CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEE-
T ss_pred             ccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEE-
Confidence                 1124567899999987766542           4678899988765433221     23445556666655443 


Q ss_pred             EECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEE--------------------------EEEeC-CeEEEEeC
Q 047260          650 AASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYL--------------------------ASVSQ-NLVKVWSM  702 (784)
Q Consensus       650 ~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~L--------------------------asgsd-d~I~IwDl  702 (784)
                      .  ++.+.+||+.+++.+..+..+.. ...+.++|++..+                          +++.. ..+.+||+
T Consensus       161 ~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (346)
T d1jmxb_         161 A--GPDIYKMDVKTGKYTVALPLRNW-NRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDL  237 (346)
T ss_dssp             E--SSSEEEECTTTCCEEEEECSTTC-CCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEET
T ss_pred             e--CCcceEEEccCCCEEEEEecCCC-ccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEEC
Confidence            3  36689999999988888764322 2333344443322                          22222 26888999


Q ss_pred             CCCceEEE-eccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEECCCcEE
Q 047260          703 ASGECIQE-LSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHDSSVK  781 (784)
Q Consensus       703 ~t~~~i~~-l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs~DG~V~  781 (784)
                      .++..... +..+...+..+.+++++.++++... +.|.+||..+++.+....+...+.+++|+|||++|++++.||.|+
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v~~~d~~v~  316 (346)
T d1jmxb_         238 KTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLA  316 (346)
T ss_dssp             TTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSEEE
T ss_pred             CCCceEEEEeecccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEEEcCCCCEEEEEEcCCCCEEEEEeCCCcEE
Confidence            88865544 4567778899999999988776654 579999999999887666777899999999999999999999999


Q ss_pred             EeC
Q 047260          782 LWK  784 (784)
Q Consensus       782 IWd  784 (784)
                      |||
T Consensus       317 v~D  319 (346)
T d1jmxb_         317 VFN  319 (346)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            997

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.84  E-value=1.8e-19  Score=199.09  Aligned_cols=263  Identities=11%  Similarity=0.032  Sum_probs=197.1

Q ss_pred             EEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCccee----eeccCCCCCeE
Q 047260          521 LLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCS----QAYTGHSSPIM  596 (784)
Q Consensus       521 ~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~----~~~~~h~~~V~  596 (784)
                      ++++.+.||+|+|||+.+++.+.++..|. .+..++|+|||++|++++.|++|++||+.+++...    ....+|...+.
T Consensus        34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~  112 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVES  112 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEE
Confidence            56778889999999999999999998764 69999999999999999999999999999876321    22335666677


Q ss_pred             EEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecC--------------CeeEEEEecCCCEEEEEEC-CCcEEEEEC
Q 047260          597 SLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKG--------------GTAQVRFQPRIGQLLAAAS-DKVVSIFDI  661 (784)
Q Consensus       597 sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~--------------~v~~v~fsp~~~~Ll~~s~-Dg~I~IwDl  661 (784)
                      +++|+||+..+++++..++.+++||..+..+......              ....+.+++++..++.... .+.+.+++.
T Consensus       113 s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~  192 (426)
T d1hzua2         113 SKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNY  192 (426)
T ss_dssp             CCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEEC
T ss_pred             eeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEe
Confidence            8888999998888888999999999998776655432              2344566667666666555 356666666


Q ss_pred             CCCeE-EEEEeCCCCCEEEEEEcCCCCEEEEEeCC--eEEEEeCCCCceEEEeccCC--CceEEEEEecCCC-EEEE--E
Q 047260          662 ETDRQ-THSLQGHAELVNYICWDTNGDYLASVSQN--LVKVWSMASGECIQELSSNG--NQFHSCVFHPSYS-TLLV--V  733 (784)
Q Consensus       662 ~t~~~-i~~l~~h~~~V~sl~~spdg~~Lasgsdd--~I~IwDl~t~~~i~~l~~~~--~~I~sl~fspdg~-~L~s--~  733 (784)
                      ..... ......+...+..+.|+|++++++++..+  .+.+|+..+++.+..+....  .......+...+. .+.+  .
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (426)
T d1hzua2         193 KDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSH  272 (426)
T ss_dssp             SSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEEC
T ss_pred             ccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEecc
Confidence            55432 22333577889999999999999888744  89999999999887775432  2233444443333 2222  2


Q ss_pred             ECCCeEEEEECCCC-------ceE-EecccCCceEEEEEeCCCCEEEE-------EECCCcEEEeC
Q 047260          734 GGISSLELWNMAEN-------KSM-TIAAHENIISALAQSPVTGMVAS-------ASHDSSVKLWK  784 (784)
Q Consensus       734 s~dg~I~Iwdl~~~-------~~~-~~~~h~~~V~slafspdg~~LaS-------gs~DG~V~IWd  784 (784)
                      +.++.+.+|+....       +.. .+.+|...|..++|+||+++|++       ++.|++|+|||
T Consensus       273 ~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd  338 (426)
T d1hzua2         273 LGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFD  338 (426)
T ss_dssp             TTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEE
T ss_pred             CCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEE
Confidence            34678888887653       333 67899999999999999999994       55688999997

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.84  E-value=4.3e-19  Score=197.27  Aligned_cols=227  Identities=9%  Similarity=-0.021  Sum_probs=172.0

Q ss_pred             CEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcce----eeeccCCCCCe
Q 047260          520 KLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFC----SQAYTGHSSPI  595 (784)
Q Consensus       520 ~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~----~~~~~~h~~~V  595 (784)
                      -++++.+.||+|.|||..+++++..+..| ..+..++|+|||++|++++.|++|++||+.+.+..    +....+|.+.+
T Consensus        33 ~~~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~  111 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIE  111 (432)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEE
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeE
Confidence            34688899999999999999999999877 46999999999999999999999999999876532    12223455666


Q ss_pred             EEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec--------------CCeeEEEEecCCCEEEEEEC-CCcEEEEE
Q 047260          596 MSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK--------------GGTAQVRFQPRIGQLLAAAS-DKVVSIFD  660 (784)
Q Consensus       596 ~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~--------------~~v~~v~fsp~~~~Ll~~s~-Dg~I~IwD  660 (784)
                      .+..|+|||..+++++..++.|++||..+.+.+....              .....+.+++++..++++.. ++.|.+||
T Consensus       112 ~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d  191 (432)
T d1qksa2         112 TSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVD  191 (432)
T ss_dssp             ECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEE
T ss_pred             EecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEE
Confidence            7777889999889999999999999999887765543              33456789999988776655 69999999


Q ss_pred             CCCCeEEEEEe-CCCCCEEEEEEcCCCCEEEEEeCC--eEEEEeCCCCceEEEecc-----CCCceEEEEEecCCCEEEE
Q 047260          661 IETDRQTHSLQ-GHAELVNYICWDTNGDYLASVSQN--LVKVWSMASGECIQELSS-----NGNQFHSCVFHPSYSTLLV  732 (784)
Q Consensus       661 l~t~~~i~~l~-~h~~~V~sl~~spdg~~Lasgsdd--~I~IwDl~t~~~i~~l~~-----~~~~I~sl~fspdg~~L~s  732 (784)
                      ..+.+...... .+...+..++|+|+|+++++++.+  .|.++|..+++.+..+..     +........+...+....+
T Consensus       192 ~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~  271 (432)
T d1qksa2         192 YTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWAT  271 (432)
T ss_dssp             TTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEE
T ss_pred             ccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecc
Confidence            98876544332 356678999999999998888733  999999999888776643     2233334444444443333


Q ss_pred             EE-CCCeEEEEECCCC
Q 047260          733 VG-GISSLELWNMAEN  747 (784)
Q Consensus       733 ~s-~dg~I~Iwdl~~~  747 (784)
                      .. .++.|.+|+....
T Consensus       272 ~~lg~~~v~~~~~~~~  287 (432)
T d1qksa2         272 SHMGDDSVALIGTDPE  287 (432)
T ss_dssp             EBSSSSEEEEEECCTT
T ss_pred             cccCCceEEecccccc
Confidence            33 2567888876543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.84  E-value=2.4e-19  Score=187.76  Aligned_cols=266  Identities=12%  Similarity=0.109  Sum_probs=196.7

Q ss_pred             ceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEee--cCCCceEEEEEcCCCCEE-EEEeCC
Q 047260          452 RFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIR--SRNSKVTCCHFSSDGKLL-ASSGHD  528 (784)
Q Consensus       452 ~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~--~H~~~V~~l~fspdg~~L-asgs~D  528 (784)
                      +++.+++.|++|.+|+....                          ..+..+.  .+...+.+++|+|||++| ++++.+
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~--------------------------~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~   55 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKM--------------------------AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKS   55 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTT--------------------------EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTT
T ss_pred             eEEEEEcCCCEEEEEECCCC--------------------------eEEEEEECCCCCCCccEEEECCCCCEEEEEECCC
Confidence            45667889999999977332                          1233343  344568899999999987 456789


Q ss_pred             CeEEEEECCCCceeeecCCCC-----CCeEEEEEccCCCEEEEEe------------CCCeEEEEcCCCCcceeeeccCC
Q 047260          529 RKVVLWNMDTLQTESTPEDHK-----SVVTDVRFRPNSSQLATAS------------VDKSVRLWDAANPNFCSQAYTGH  591 (784)
Q Consensus       529 g~I~IWd~~t~~~~~~l~~h~-----~~It~i~fspdg~~Latgs------------~Dg~I~IWdl~~~~~~~~~~~~h  591 (784)
                      +.|.+||+.+++.+..+..+.     ..+..++|+|+++++++++            .+..+.+||..+.. ....+. +
T Consensus        56 ~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~-~  133 (337)
T d1pbyb_          56 ESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS-RRKAFE-A  133 (337)
T ss_dssp             TEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE-EEEEEE-C
T ss_pred             CeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCe-EEEecc-c
Confidence            999999999999988876554     3456799999999998876            35778899998866 444444 3


Q ss_pred             CCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecC--CeeEEEEecCC------------------------C
Q 047260          592 SSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKG--GTAQVRFQPRI------------------------G  645 (784)
Q Consensus       592 ~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~--~v~~v~fsp~~------------------------~  645 (784)
                      ...+.+++|+|++..+++.   ++.+.+||..+.+.......  ......+.+++                        .
T Consensus       134 ~~~~~~~~~s~dg~~l~~~---~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (337)
T d1pbyb_         134 PRQITMLAWARDGSKLYGL---GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDID  210 (337)
T ss_dssp             CSSCCCEEECTTSSCEEEE---SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSC
T ss_pred             cCCceEEEEcCCCCEEEEE---cCCcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccc
Confidence            4568899999999866654   35578899988776655431  11111111111                        1


Q ss_pred             EEEEEECCCcEEEEECCCCeEEE-EEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEEEeccCCCceEEEEEe
Q 047260          646 QLLAAASDKVVSIFDIETDRQTH-SLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFH  724 (784)
Q Consensus       646 ~Ll~~s~Dg~I~IwDl~t~~~i~-~l~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~~l~~~~~~I~sl~fs  724 (784)
                      .+.....++.+.+||..++.... .+..+...+.++.+++++.+++++ ++.|++||+.+++.+..+.. ...+.+++|+
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s  288 (337)
T d1pbyb_         211 PADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVPL-PHSYYSVNVS  288 (337)
T ss_dssp             TTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEEC-SSCCCEEEEC
T ss_pred             eeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc-cccEEEEECCCCcEEEEEcC-CCCEEEEEEC
Confidence            11111224568999999886554 345577888999999999998765 47899999999999988854 5678999999


Q ss_pred             cCCCEEEEEECCCeEEEEECCCCceE
Q 047260          725 PSYSTLLVVGGISSLELWNMAENKSM  750 (784)
Q Consensus       725 pdg~~L~s~s~dg~I~Iwdl~~~~~~  750 (784)
                      |+|++|++++.++.|+|||..+.+.+
T Consensus       289 ~dG~~l~v~~~~~~i~v~D~~t~~~v  314 (337)
T d1pbyb_         289 TDGSTVWLGGALGDLAAYDAETLEKK  314 (337)
T ss_dssp             TTSCEEEEESBSSEEEEEETTTCCEE
T ss_pred             CCCCEEEEEeCCCcEEEEECCCCcEE
Confidence            99999999999999999999998877

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.83  E-value=5.6e-18  Score=181.63  Aligned_cols=277  Identities=9%  Similarity=0.022  Sum_probs=203.3

Q ss_pred             ecCCCceEEEEEcCCCCEEEEE-----eCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEe----------
Q 047260          504 RSRNSKVTCCHFSSDGKLLASS-----GHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATAS----------  568 (784)
Q Consensus       504 ~~H~~~V~~l~fspdg~~Lasg-----s~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs----------  568 (784)
                      ..+.+++.+++++|||+.+++.     +.++.|.+||..+++.+..+..+...  .++|+|||++|++++          
T Consensus        17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~   94 (373)
T d2madh_          17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGK   94 (373)
T ss_pred             ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccc
Confidence            3588899999999999988764     23467999999999999988766544  799999999999875          


Q ss_pred             CCCeEEEEcCCCCcceeeeccCCCCCe-------EEEEEcCCCCcEEEEE-eCCCeEEEEeCCCCeeEEeecCCeeEEEE
Q 047260          569 VDKSVRLWDAANPNFCSQAYTGHSSPI-------MSLDFHPKKTDLFCFC-DNDNEIQYWSINPFLCTHITKGGTAQVRF  640 (784)
Q Consensus       569 ~Dg~I~IWdl~~~~~~~~~~~~h~~~V-------~sl~~sp~~~~ll~sg-s~dg~I~iwDl~~~~~~~~~~~~v~~v~f  640 (784)
                      .++.|.|||+.+++ ....+..+....       ..+.|++++..+++.. ..++.+.+|+....+...... ...++.+
T Consensus        95 ~~~~v~v~D~~t~~-~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  172 (373)
T d2madh_          95 RTDYVEVFDPVTFL-PIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLS-SPTCYHI  172 (373)
T ss_pred             cceEEEEEECCCCc-EEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEec-cceeEEE
Confidence            45789999999877 344444333332       4577888887665544 446788899988766554443 4567889


Q ss_pred             ecCCCEEE-EEECCCcEEEEECCCCeEEEEEeCC------CCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEE--Ee
Q 047260          641 QPRIGQLL-AAASDKVVSIFDIETDRQTHSLQGH------AELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQ--EL  711 (784)
Q Consensus       641 sp~~~~Ll-~~s~Dg~I~IwDl~t~~~i~~l~~h------~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~--~l  711 (784)
                      +|++..++ +.+.|+.+.+||...++.......+      ......+.+++++.+++...++.+.+|+........  .+
T Consensus       173 s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  252 (373)
T d2madh_         173 HPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPI  252 (373)
T ss_pred             ecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEee
Confidence            99988765 5667999999999988776655432      223445667777777777777799999988765322  22


Q ss_pred             ccC----------CCceEEEEEecCCCEEE----------EEECCCeEEEEECCCCceEEecccCCceEEEEEeCCCC--
Q 047260          712 SSN----------GNQFHSCVFHPSYSTLL----------VVGGISSLELWNMAENKSMTIAAHENIISALAQSPVTG--  769 (784)
Q Consensus       712 ~~~----------~~~I~sl~fspdg~~L~----------s~s~dg~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~--  769 (784)
                      ..+          ......+++++++..++          ....++.|.+||..+++.+....+...+.+++|+|||+  
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~a~spDG~~~  332 (373)
T d2madh_         253 DALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPD  332 (373)
T ss_pred             ccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCCCCeeEEEECCCCCEE
Confidence            111          12234456666665544          34455689999999999887777888899999999998  


Q ss_pred             EEEEEECCCcEEEeC
Q 047260          770 MVASASHDSSVKLWK  784 (784)
Q Consensus       770 ~LaSgs~DG~V~IWd  784 (784)
                      ++++++.|+.|+|||
T Consensus       333 l~vt~~~d~~v~v~D  347 (373)
T d2madh_         333 LYALSAGTEVLHIYD  347 (373)
T ss_pred             EEEEeCCCCeEEEEE
Confidence            456788999999997

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.81  E-value=8.7e-19  Score=184.19  Aligned_cols=270  Identities=9%  Similarity=0.027  Sum_probs=196.1

Q ss_pred             CCceEeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEee-cCCCceEEEEEcCCCCEEE-EEeC
Q 047260          450 IDRFADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIR-SRNSKVTCCHFSSDGKLLA-SSGH  527 (784)
Q Consensus       450 ~~~ll~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~-~H~~~V~~l~fspdg~~La-sgs~  527 (784)
                      .++++.+++.|++|.+|+....                          +.+.+++ .|...+.+++|+|||++|+ ++..
T Consensus         7 ~~~~l~~~~~~~~v~v~D~~t~--------------------------~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~   60 (346)
T d1jmxb_           7 GHEYMIVTNYPNNLHVVDVASD--------------------------TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNH   60 (346)
T ss_dssp             TCEEEEEEETTTEEEEEETTTT--------------------------EEEEEEECSSCCSSCEEEECTTSSEEEEEETT
T ss_pred             CCcEEEEEcCCCEEEEEECCCC--------------------------CEEEEEEcCCCCCcceEEECCCCCEEEEEECC
Confidence            4556667999999999977322                          2344444 3566789999999999875 5557


Q ss_pred             CCeEEEEECCCCceeeecCCCC------CCeEEEEEccCCCEEEEEe------------CCCeEEEEcCCCCcceeeec-
Q 047260          528 DRKVVLWNMDTLQTESTPEDHK------SVVTDVRFRPNSSQLATAS------------VDKSVRLWDAANPNFCSQAY-  588 (784)
Q Consensus       528 Dg~I~IWd~~t~~~~~~l~~h~------~~It~i~fspdg~~Latgs------------~Dg~I~IWdl~~~~~~~~~~-  588 (784)
                      ++.|++||+.+++.+..+....      ..+..++|+|||+++++++            .++.+.+||..++....... 
T Consensus        61 ~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  140 (346)
T d1jmxb_          61 YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRT  140 (346)
T ss_dssp             TTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEE
T ss_pred             CCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEe
Confidence            8999999999998887764332      2456899999999998775            46778899887755321111 


Q ss_pred             cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec--CCeeEEEEecCCCE--------------------
Q 047260          589 TGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK--GGTAQVRFQPRIGQ--------------------  646 (784)
Q Consensus       589 ~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~--~~v~~v~fsp~~~~--------------------  646 (784)
                      ......+..+.+.+++. ++++   ++.+.+|++.+...+..+.  .....+.++|++..                    
T Consensus       141 ~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (346)
T d1jmxb_         141 FPMPRQVYLMRAADDGS-LYVA---GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARF  216 (346)
T ss_dssp             EECCSSCCCEEECTTSC-EEEE---SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC
T ss_pred             eeccCceEEEEecCCCE-EEEe---CCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeee
Confidence            11233455666666664 4443   4568999998777665543  22222233333322                    


Q ss_pred             ------EEEEECCCcEEEEECCCCeEEEE-EeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEEEeccCCCceE
Q 047260          647 ------LLAAASDKVVSIFDIETDRQTHS-LQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELSSNGNQFH  719 (784)
Q Consensus       647 ------Ll~~s~Dg~I~IwDl~t~~~i~~-l~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~~l~~~~~~I~  719 (784)
                            +.++..+..+.+||+.++..... +..+...+..+.+++++.+++....+.|++||+.+++.+..+.. ...+.
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~  295 (346)
T d1jmxb_         217 KDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANL-DHTYY  295 (346)
T ss_dssp             -------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEESEEEEEETTTTEEEEEEEC-SSCCC
T ss_pred             ccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEecCCeEEEEECCCCcEEEEEcC-CCCEE
Confidence                  22333456788899988765444 45688889999999999999988888999999999999888864 45789


Q ss_pred             EEEEecCCCEEEEEECCCeEEEEECCCCceE
Q 047260          720 SCVFHPSYSTLLVVGGISSLELWNMAENKSM  750 (784)
Q Consensus       720 sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~  750 (784)
                      +++|+||+++|++++.|+.|++||+.+++.+
T Consensus       296 ~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i  326 (346)
T d1jmxb_         296 CVAFDKKGDKLYLGGTFNDLAVFNPDTLEKV  326 (346)
T ss_dssp             EEEECSSSSCEEEESBSSEEEEEETTTTEEE
T ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECccCCEE
Confidence            9999999999999999999999999999887

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=1e-17  Score=175.67  Aligned_cols=264  Identities=14%  Similarity=0.192  Sum_probs=188.7

Q ss_pred             EEEEEeCCCeEEEEECCCCceeeec--CCCCCCeEEEEEccCCCEEEEEe-CCCeEEEEcCCCCcceee--eccCCCCCe
Q 047260          521 LLASSGHDRKVVLWNMDTLQTESTP--EDHKSVVTDVRFRPNSSQLATAS-VDKSVRLWDAANPNFCSQ--AYTGHSSPI  595 (784)
Q Consensus       521 ~Lasgs~Dg~I~IWd~~t~~~~~~l--~~h~~~It~i~fspdg~~Latgs-~Dg~I~IWdl~~~~~~~~--~~~~h~~~V  595 (784)
                      .+++++.|++|+||++++...+..+  ..|.+.|..|+|+|||++|++++ .|+.|++|++........  ....+...+
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p   85 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL   85 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCc
Confidence            4567789999999999754433322  36889999999999999996655 489999999986543222  122344567


Q ss_pred             EEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEe-----ecCCeeEEEEecCCCEEEEEEC-CCcEEEEECCCCeEEEE
Q 047260          596 MSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHI-----TKGGTAQVRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHS  669 (784)
Q Consensus       596 ~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~-----~~~~v~~v~fsp~~~~Ll~~s~-Dg~I~IwDl~t~~~i~~  669 (784)
                      ..++|+|+++.+++++..++.|.+|+.........     ....+.++.++|+++++++++. +..|.+|+.........
T Consensus        86 ~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~  165 (333)
T d1ri6a_          86 THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVA  165 (333)
T ss_dssp             SEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE
T ss_pred             eEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCccee
Confidence            88999999998887777788999998876543322     2245778899999999888886 57799999876532221


Q ss_pred             ------EeCCCCCEEEEEEcCCCCEEEEEeCC--eEEEEeCCCCc----eEEEec------cCCCceEEEEEecCCCEEE
Q 047260          670 ------LQGHAELVNYICWDTNGDYLASVSQN--LVKVWSMASGE----CIQELS------SNGNQFHSCVFHPSYSTLL  731 (784)
Q Consensus       670 ------l~~h~~~V~sl~~spdg~~Lasgsdd--~I~IwDl~t~~----~i~~l~------~~~~~I~sl~fspdg~~L~  731 (784)
                            ..........++|++++.+++.....  ...+|++....    ....+.      ........+++++++++++
T Consensus       166 ~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~  245 (333)
T d1ri6a_         166 QDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLY  245 (333)
T ss_dssp             EEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEE
T ss_pred             eeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCcee
Confidence                  12244567889999999998877633  77888765432    222221      1234567788999999877


Q ss_pred             EEEC-CCeEEEEECCCCceE----EecccCCceEEEEEeCCCCEEEEEE-CCCcEEEeC
Q 047260          732 VVGG-ISSLELWNMAENKSM----TIAAHENIISALAQSPVTGMVASAS-HDSSVKLWK  784 (784)
Q Consensus       732 s~s~-dg~I~Iwdl~~~~~~----~~~~h~~~V~slafspdg~~LaSgs-~DG~V~IWd  784 (784)
                      +... ++.+.+|++......    ....+...+.+++|+|||++|++++ .++.|+||+
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~  304 (333)
T d1ri6a_         246 ACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYE  304 (333)
T ss_dssp             EEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEE
T ss_pred             eecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEE
Confidence            7655 578999988765432    2234456788999999999887775 468899984

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=1.4e-16  Score=166.92  Aligned_cols=272  Identities=11%  Similarity=0.105  Sum_probs=191.3

Q ss_pred             EeccccCCcceeEEeecCCCCcceeccccCCCCccCCCCCCcceeEEeEeecCCCceEEEEEcCCCCEEEEEe-CCCeEE
Q 047260          454 ADVGSIDENMESLLSHDGGDGRELYGTLKHSPEHQKQPTKGFTFCEVGCIRSRNSKVTCCHFSSDGKLLASSG-HDRKVV  532 (784)
Q Consensus       454 l~~gS~D~~v~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~i~~l~~H~~~V~~l~fspdg~~Lasgs-~Dg~I~  532 (784)
                      +.+++.|+.|++|+....+                       .+..+.. ..|.+.|.+|+|+|||++|++++ .|+.|+
T Consensus         7 ~v~~~~~~~I~v~~~~~~~-----------------------~l~~~~~-~~~~~~v~~la~spDG~~L~v~~~~d~~i~   62 (333)
T d1ri6a_           7 YIASPESQQIHVWNLNHEG-----------------------ALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVL   62 (333)
T ss_dssp             EEEEGGGTEEEEEEECTTS-----------------------CEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEE
T ss_pred             EEECCCCCcEEEEEEcCCC-----------------------CeEEEEE-EcCCCCEeEEEEeCCCCEEEEEECCCCeEE
Confidence            3567789999999875432                       0122222 34788999999999999986555 589999


Q ss_pred             EEECCCCceeeec---CCCCCCeEEEEEccCCCEEEEEeC-CCeEEEEcCCCCcce-eeeccCCCCCeEEEEEcCCCCcE
Q 047260          533 LWNMDTLQTESTP---EDHKSVVTDVRFRPNSSQLATASV-DKSVRLWDAANPNFC-SQAYTGHSSPIMSLDFHPKKTDL  607 (784)
Q Consensus       533 IWd~~t~~~~~~l---~~h~~~It~i~fspdg~~Latgs~-Dg~I~IWdl~~~~~~-~~~~~~h~~~V~sl~~sp~~~~l  607 (784)
                      +|++........+   ..+...+..++|+|||++|++++. ++.|.+|+....... ......+...+.++.++|++..+
T Consensus        63 ~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~  142 (333)
T d1ri6a_          63 AYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTL  142 (333)
T ss_dssp             EEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEE
T ss_pred             EEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceee
Confidence            9999765433222   234556788999999999999885 678999988765422 22334566778899999999988


Q ss_pred             EEEEeCCCeEEEEeCCCCeeEEe---------ecCCeeEEEEecCCCEEEEEEC-CCcEEEEECCCCe----EEEEEe--
Q 047260          608 FCFCDNDNEIQYWSINPFLCTHI---------TKGGTAQVRFQPRIGQLLAAAS-DKVVSIFDIETDR----QTHSLQ--  671 (784)
Q Consensus       608 l~sgs~dg~I~iwDl~~~~~~~~---------~~~~v~~v~fsp~~~~Ll~~s~-Dg~I~IwDl~t~~----~i~~l~--  671 (784)
                      ++....+..|.+|+.........         .......++|++++..++.... .+...+++.....    ....+.  
T Consensus       143 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  222 (333)
T d1ri6a_         143 WVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMM  222 (333)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECS
T ss_pred             eccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeee
Confidence            88777888999999875322211         1134568999999998887765 5778888765431    222221  


Q ss_pred             ----CCCCCEEEEEEcCCCCEEEEEe--CCeEEEEeCCCCceEEE---eccCCCceEEEEEecCCCEEEEEEC-CCeEEE
Q 047260          672 ----GHAELVNYICWDTNGDYLASVS--QNLVKVWSMASGECIQE---LSSNGNQFHSCVFHPSYSTLLVVGG-ISSLEL  741 (784)
Q Consensus       672 ----~h~~~V~sl~~spdg~~Lasgs--dd~I~IwDl~t~~~i~~---l~~~~~~I~sl~fspdg~~L~s~s~-dg~I~I  741 (784)
                          ........+++++++++++...  ++.+.+|++........   .......+..++|+|||++|++++. ++.|.+
T Consensus       223 ~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v  302 (333)
T d1ri6a_         223 PENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISV  302 (333)
T ss_dssp             CTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEE
T ss_pred             ecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEE
Confidence                1234567789999999888776  34899998876543322   2334456788999999999888765 478999


Q ss_pred             EEC--CCCce
Q 047260          742 WNM--AENKS  749 (784)
Q Consensus       742 wdl--~~~~~  749 (784)
                      |++  .+++.
T Consensus       303 ~~id~~tG~l  312 (333)
T d1ri6a_         303 YEIVGEQGLL  312 (333)
T ss_dssp             EEEETTTTEE
T ss_pred             EEEECCCCcE
Confidence            854  55554

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.77  E-value=7.9e-16  Score=164.55  Aligned_cols=258  Identities=11%  Similarity=0.040  Sum_probs=183.5

Q ss_pred             eEeecCCCceEEEEEcCCCCEEEEEe----------CCCeEEEEECCCCceeeecCCCCCCe-------EEEEEccCCCE
Q 047260          501 GCIRSRNSKVTCCHFSSDGKLLASSG----------HDRKVVLWNMDTLQTESTPEDHKSVV-------TDVRFRPNSSQ  563 (784)
Q Consensus       501 ~~l~~H~~~V~~l~fspdg~~Lasgs----------~Dg~I~IWd~~t~~~~~~l~~h~~~I-------t~i~fspdg~~  563 (784)
                      ..+..+...  .++|+|||++|++++          .++.|.|||..+++.+..+..+....       ..+.|+++++.
T Consensus        61 ~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~  138 (373)
T d2madh_          61 GHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNAD  138 (373)
T ss_pred             EEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCc
Confidence            344444433  689999999998875          45789999999999988887665544       45788888887


Q ss_pred             EEEEeC--CCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecC-------C
Q 047260          564 LATASV--DKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKG-------G  634 (784)
Q Consensus       564 Latgs~--Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~-------~  634 (784)
                      ++....  ++.+.+|+....+. .    .+...+.++.++|++..++++.+.|+.+.+|+............       .
T Consensus       139 ~~v~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (373)
T d2madh_         139 LLFFQFAAGPAVGLVVQGGSSD-D----QLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQN  213 (373)
T ss_pred             EEEEEEcCCCceEEeeccCCeE-E----EEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCcc
Confidence            766543  56788898876542 2    23345678899999999999999999999999987666544321       1


Q ss_pred             --eeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEE--EeCCC----------CCEEEEEEcCCCCEEEEE--------
Q 047260          635 --TAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHS--LQGHA----------ELVNYICWDTNGDYLASV--------  692 (784)
Q Consensus       635 --v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~--l~~h~----------~~V~sl~~spdg~~Lasg--------  692 (784)
                        ...+.+.++ ..++..+.++.+.+|+.........  +..+.          .....+++++++..++..        
T Consensus       214 ~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  292 (373)
T d2madh_         214 LLTQPAQANKS-GRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWK  292 (373)
T ss_pred             ceeeeEEECCC-ceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEE
Confidence              122334443 4556667789999999887653322  22121          223445666666654432        


Q ss_pred             --e-CCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCE--EEEEECCCeEEEEECCCCceE-EecccCCceEEEEEeC
Q 047260          693 --S-QNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYST--LLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSP  766 (784)
Q Consensus       693 --s-dd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~--L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafsp  766 (784)
                        . ++.|.+||..+++.+..+. +...+..++|+|||+.  +++++.|+.|++||+.+++.+ .+..+....+.|++.+
T Consensus       293 ~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~  371 (373)
T d2madh_         293 LHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMN  371 (373)
T ss_pred             eecCCCeEEEEECCCCcEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEec
Confidence              2 3489999999999998875 4567899999999985  356778899999999999988 5556777788887765


Q ss_pred             C
Q 047260          767 V  767 (784)
Q Consensus       767 d  767 (784)
                      +
T Consensus       372 ~  372 (373)
T d2madh_         372 E  372 (373)
T ss_pred             C
Confidence            4

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.75  E-value=7.4e-17  Score=171.05  Aligned_cols=271  Identities=8%  Similarity=0.046  Sum_probs=183.2

Q ss_pred             EEEEEcCCCCEEEEEe-----CCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEe----------CCCeEEE
Q 047260          511 TCCHFSSDGKLLASSG-----HDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATAS----------VDKSVRL  575 (784)
Q Consensus       511 ~~l~fspdg~~Lasgs-----~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs----------~Dg~I~I  575 (784)
                      .-.+.+||++.+++..     .++.|.+||..+++.+.++..+...  .++|+|||++|++++          .|+.|++
T Consensus         5 ~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v   82 (355)
T d2bbkh_           5 ILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEV   82 (355)
T ss_dssp             BCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred             EeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEE
Confidence            3345689999887753     4567999999999999988765444  799999999887653          4789999


Q ss_pred             EcCCCCcceeeeccCC-------CCCeEEEEEcCCCCcEEEEE-eCCCeEEEEeCCCCeeEEeecCCeeEEEEecCCCEE
Q 047260          576 WDAANPNFCSQAYTGH-------SSPIMSLDFHPKKTDLFCFC-DNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQL  647 (784)
Q Consensus       576 Wdl~~~~~~~~~~~~h-------~~~V~sl~~sp~~~~ll~sg-s~dg~I~iwDl~~~~~~~~~~~~v~~v~fsp~~~~L  647 (784)
                      ||+.+++.. ..+..+       ......++|++++..+++.. +.+..+.+|+..+.+.+..+........+.......
T Consensus        83 ~D~~t~~~~-~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (355)
T d2bbkh_          83 FDPVTLLPT-ADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTF  161 (355)
T ss_dssp             ECTTTCCEE-EEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEE
T ss_pred             EECCCCCEE-EEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcce
Confidence            999987733 322211       12345689999998766554 456789999999988776665433322222222333


Q ss_pred             EEEECCCcEEEEECCCCeEEEEE------eCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEE--EeccC----
Q 047260          648 LAAASDKVVSIFDIETDRQTHSL------QGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQ--ELSSN----  714 (784)
Q Consensus       648 l~~s~Dg~I~IwDl~t~~~i~~l------~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~--~l~~~----  714 (784)
                      ++.+.|+...++.......+..+      ..+...+....+.+++..++.++.+ .+++|++..++...  ....+    
T Consensus       162 ~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  241 (355)
T d2bbkh_         162 FMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAE  241 (355)
T ss_dssp             EEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHH
T ss_pred             EEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccce
Confidence            44444444444443332221111      1233445566777888877777755 99999998875422  12111    


Q ss_pred             ------CCceEEEEEecCCCEEEEEECC----------CeEEEEECCCCceEEecccCCceEEEEEeCCCC--EEEEEEC
Q 047260          715 ------GNQFHSCVFHPSYSTLLVVGGI----------SSLELWNMAENKSMTIAAHENIISALAQSPVTG--MVASASH  776 (784)
Q Consensus       715 ------~~~I~sl~fspdg~~L~s~s~d----------g~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~--~LaSgs~  776 (784)
                            ......+++++++..+++...+          ..|.+||..+++.+....+...+.+++|+|||+  ++++++.
T Consensus       242 ~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~~~  321 (355)
T d2bbkh_         242 RADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTG  321 (355)
T ss_dssp             HHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETT
T ss_pred             EeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcCCCCeEEEEEECC
Confidence                  1223458899999988776543          369999999998885555667789999999997  4566777


Q ss_pred             CCcEEEeC
Q 047260          777 DSSVKLWK  784 (784)
Q Consensus       777 DG~V~IWd  784 (784)
                      |+.|+|||
T Consensus       322 d~~i~v~D  329 (355)
T d2bbkh_         322 DKTLYIHD  329 (355)
T ss_dssp             TTEEEEEE
T ss_pred             CCEEEEEE
Confidence            99999997

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.69  E-value=1.5e-15  Score=160.81  Aligned_cols=262  Identities=10%  Similarity=0.089  Sum_probs=176.7

Q ss_pred             EeEeecCCCceEEEEEcCCCCEEEEEe----------CCCeEEEEECCCCceeeecCCCC-------CCeEEEEEccCCC
Q 047260          500 VGCIRSRNSKVTCCHFSSDGKLLASSG----------HDRKVVLWNMDTLQTESTPEDHK-------SVVTDVRFRPNSS  562 (784)
Q Consensus       500 i~~l~~H~~~V~~l~fspdg~~Lasgs----------~Dg~I~IWd~~t~~~~~~l~~h~-------~~It~i~fspdg~  562 (784)
                      +.++..+.  +..++|||||++|++++          .|+.|++||+.+++.+..+..+.       .....++|+++++
T Consensus        41 ~~~~~~g~--~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~  118 (355)
T d2bbkh_          41 IGMIDGGF--LPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGK  118 (355)
T ss_dssp             EEEEEECS--SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSS
T ss_pred             EEEEECCC--CCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCC
Confidence            33444443  33789999999887643          47899999999999887764332       2345689999999


Q ss_pred             EEEEEe--CCCeEEEEcCCCCcceeeeccCCC-------CCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecC
Q 047260          563 QLATAS--VDKSVRLWDAANPNFCSQAYTGHS-------SPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKG  633 (784)
Q Consensus       563 ~Latgs--~Dg~I~IWdl~~~~~~~~~~~~h~-------~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~  633 (784)
                      ++++++  .+..+.+|+..+.+ ....+..+.       .....+.+++++..+++....++.+.+++.......  ...
T Consensus       119 ~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~--~~~  195 (355)
T d2bbkh_         119 TLLFYQFSPAPAVGVVDLEGKA-FKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPE--DEF  195 (355)
T ss_dssp             EEEEEECSSSCEEEEEETTTTE-EEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCT--TSC
T ss_pred             eeEEecCCCCceeeeeecCCCc-EeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccce--ecc
Confidence            888775  45789999998876 333333222       122345566666655555555555555554432211  112


Q ss_pred             CeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEE--EEeCCC----------CCEEEEEEcCCCCEEEEEeC-------
Q 047260          634 GTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTH--SLQGHA----------ELVNYICWDTNGDYLASVSQ-------  694 (784)
Q Consensus       634 ~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~--~l~~h~----------~~V~sl~~spdg~~Lasgsd-------  694 (784)
                      .+....+.+++..++.++.++.+++|++..++...  ....+.          .....+++++++..++....       
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~  275 (355)
T d2bbkh_         196 LINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRH  275 (355)
T ss_dssp             BCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCT
T ss_pred             eeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceee
Confidence            34456778888899999999999999998775322  121111          12345788999998776541       


Q ss_pred             ----CeEEEEeCCCCceEEEeccCCCceEEEEEecCCCE--EEEEECCCeEEEEECCCCceE-EecccCCceEEEEEeCC
Q 047260          695 ----NLVKVWSMASGECIQELSSNGNQFHSCVFHPSYST--LLVVGGISSLELWNMAENKSM-TIAAHENIISALAQSPV  767 (784)
Q Consensus       695 ----d~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~--L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafspd  767 (784)
                          +.|.+||..+++.+..+... ..+.+++|+||++.  +++++.|+.|++||+.+++.+ .+..+......+.+.++
T Consensus       276 ~~~~~~v~v~d~~t~~~~~~~~~~-~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~d~  354 (355)
T d2bbkh_         276 KTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADM  354 (355)
T ss_dssp             TSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEECCCC
T ss_pred             cCCCCeEEEEeCCCCcEEEEecCC-CCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCCccEEEeCCC
Confidence                27999999999998888643 55789999999973  445566899999999999987 45556555555555443

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.57  E-value=2.5e-14  Score=153.66  Aligned_cols=275  Identities=7%  Similarity=-0.056  Sum_probs=185.3

Q ss_pred             CCCceEEEEEcCCCCEEEE---EeCC--CeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEe----------CC
Q 047260          506 RNSKVTCCHFSSDGKLLAS---SGHD--RKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATAS----------VD  570 (784)
Q Consensus       506 H~~~V~~l~fspdg~~Las---gs~D--g~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs----------~D  570 (784)
                      +.+....++..++++....   ...+  ..|.+||..+++.+..+..+...  .++|+|||+.|++++          .|
T Consensus        18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d   95 (368)
T d1mdah_          18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRT   95 (368)
T ss_dssp             CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEE
T ss_pred             cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccC
Confidence            4444555566778875322   2333  45778899999999888766654  589999999998865          36


Q ss_pred             CeEEEEcCCCCcceeeeccCCC-------CCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCCeeEEEEecC
Q 047260          571 KSVRLWDAANPNFCSQAYTGHS-------SPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPR  643 (784)
Q Consensus       571 g~I~IWdl~~~~~~~~~~~~h~-------~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v~~v~fsp~  643 (784)
                      +.|.+||..+.+.. ..+..+.       .....++|+||++.++++...++.|.+||+.+.+.......+.....+...
T Consensus        96 ~~v~v~D~~t~~~~-~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~  174 (368)
T d1mdah_          96 DYVEVFDPVTFLPI-ADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGA  174 (368)
T ss_dssp             EEEEEECTTTCCEE-EEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEE
T ss_pred             CeEEEEECCCCcEe-eeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCC
Confidence            78999999987733 3222211       223468999999988887778899999999998887776543322222233


Q ss_pred             CCEEEEEECCCcEEEEECCCCeEEEEE------eCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEEEec--cC-
Q 047260          644 IGQLLAAASDKVVSIFDIETDRQTHSL------QGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELS--SN-  714 (784)
Q Consensus       644 ~~~Ll~~s~Dg~I~IwDl~t~~~i~~l------~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~~l~--~~-  714 (784)
                      ...+++.+.||.+.++++.........      ..+...+..+.+.+++..+.+. .+.+.++++..+.......  .. 
T Consensus       175 ~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~  253 (368)
T d1mdah_         175 AATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV-ASSILQGDIPAAGATMKAAIDGNE  253 (368)
T ss_dssp             TTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB-SSCCEEEECCSSCCEEECCCCSSC
T ss_pred             CceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEec-CCCEEEEeecCCceEEEeeccccc
Confidence            455666677888888888765433222      1233445567777777665543 3456666665554332221  11 


Q ss_pred             ---------CCceEEEEEecCCCEEEEEECC---------CeEEEEECCCCceEEecccCCceEEEEEeCCCC--EEEEE
Q 047260          715 ---------GNQFHSCVFHPSYSTLLVVGGI---------SSLELWNMAENKSMTIAAHENIISALAQSPVTG--MVASA  774 (784)
Q Consensus       715 ---------~~~I~sl~fspdg~~L~s~s~d---------g~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~--~LaSg  774 (784)
                               ......+++++++..+++...+         ..|.+||..+++.+....+...+.+++|+|||+  +++++
T Consensus       254 ~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~ly~s~  333 (368)
T d1mdah_         254 SGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANS  333 (368)
T ss_dssp             THHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEE
T ss_pred             ceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCCCceeEEEECCCCCEEEEEEe
Confidence                     1123457899999887766432         259999999999886666667899999999997  34566


Q ss_pred             ECCCcEEEeC
Q 047260          775 SHDSSVKLWK  784 (784)
Q Consensus       775 s~DG~V~IWd  784 (784)
                      ..|+.|+|||
T Consensus       334 ~~~~~v~v~D  343 (368)
T d1mdah_         334 AGTEVLDIYD  343 (368)
T ss_dssp             TTTTEEEEEE
T ss_pred             CCCCeEEEEE
Confidence            6789999997

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.49  E-value=6.2e-13  Score=142.54  Aligned_cols=255  Identities=10%  Similarity=0.009  Sum_probs=164.5

Q ss_pred             EeEeecCCCceEEEEEcCCCCEEEEEe----------CCCeEEEEECCCCceeeecCCCCC-------CeEEEEEccCCC
Q 047260          500 VGCIRSRNSKVTCCHFSSDGKLLASSG----------HDRKVVLWNMDTLQTESTPEDHKS-------VVTDVRFRPNSS  562 (784)
Q Consensus       500 i~~l~~H~~~V~~l~fspdg~~Lasgs----------~Dg~I~IWd~~t~~~~~~l~~h~~-------~It~i~fspdg~  562 (784)
                      +..+..+...  .++|+|||++|++++          .|+.|.+||..+++.+..+..+..       ....++|+|||+
T Consensus        59 ~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk  136 (368)
T d1mdah_          59 LGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSA  136 (368)
T ss_dssp             EEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSS
T ss_pred             EEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCC
Confidence            3344445544  489999999888764          367899999999998887754322       234689999999


Q ss_pred             EEEEEe-CCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEee---------c
Q 047260          563 QLATAS-VDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHIT---------K  632 (784)
Q Consensus       563 ~Latgs-~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~---------~  632 (784)
                      +|+++. .++.|.+||+.+.+ ....+..+...    .+.+.+...++..+.||.+.+|++.........         .
T Consensus       137 ~l~va~~~~~~v~~~d~~~~~-~~~~~~~~~~~----~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (368)
T d1mdah_         137 CLLFFLFGSSAAAGLSVPGAS-DDQLTKSASCF----HIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQN  211 (368)
T ss_dssp             CEEEEECSSSCEEEEEETTTE-EEEEEECSSCC----CCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSC
T ss_pred             EEEEEeCCCCeEEEEECCCCc-EeEEeeccCcc----eEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccc
Confidence            998876 47999999999876 34444333222    123344556777777888888887643222111         1


Q ss_pred             CCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEe--CCC----------CCEEEEEEcCCCCEEEEEe--C----
Q 047260          633 GGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQ--GHA----------ELVNYICWDTNGDYLASVS--Q----  694 (784)
Q Consensus       633 ~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~--~h~----------~~V~sl~~spdg~~Lasgs--d----  694 (784)
                      ..+..+.+.+++..++  ..++.++++++..+.......  .+.          .....+++++++..++...  +    
T Consensus       212 ~~~~~~~~~~~g~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~  289 (368)
T d1mdah_         212 CSSQAAQANYPGMLVW--AVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSC  289 (368)
T ss_dssp             BCSCCEEETTTTEEEE--CBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCT
T ss_pred             cceeecccccCcEEEE--ecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCcee
Confidence            1223445555544333  334666777766554332211  111          1123477889888776543  1    


Q ss_pred             ----CeEEEEeCCCCceEEEeccCCCceEEEEEecCCCE-E-EEEECCCeEEEEECCCCceEEecccCCceEEEEE
Q 047260          695 ----NLVKVWSMASGECIQELSSNGNQFHSCVFHPSYST-L-LVVGGISSLELWNMAENKSMTIAAHENIISALAQ  764 (784)
Q Consensus       695 ----d~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~-L-~s~s~dg~I~Iwdl~~~~~~~~~~h~~~V~slaf  764 (784)
                          ..|.+||..+++.+..+... ..+..++|+||++. + +++..++.|++||..+++.+....-....+.|++
T Consensus       290 ~~~~~~v~v~D~~t~~~~~~~~~~-~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~~P~~l~~  364 (368)
T d1mdah_         290 LAAAENTSSVTASVGQTSGPISNG-HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPESLSV  364 (368)
T ss_dssp             TSCEEEEEEEESSSCCEEECCEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCCEEEC
T ss_pred             ecCCceEEEEECCCCcEeEEecCC-CceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECCCCCCEEEE
Confidence                15999999999988877643 56889999999974 3 4455678999999999998844433333444443

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.45  E-value=4.3e-12  Score=140.54  Aligned_cols=265  Identities=12%  Similarity=0.072  Sum_probs=157.9

Q ss_pred             eecCCCceEEEEEcCCCCEEEEEeC---------CCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeE
Q 047260          503 IRSRNSKVTCCHFSSDGKLLASSGH---------DRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSV  573 (784)
Q Consensus       503 l~~H~~~V~~l~fspdg~~Lasgs~---------Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I  573 (784)
                      +..|...|.++.|||||++|+.++.         ++.+.|||+.+++. ..+..|...+..+.|+|||+.||.. .++.+
T Consensus        57 ~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l  134 (470)
T d2bgra1          57 FDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYV-WNNDI  134 (470)
T ss_dssp             TTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEE-ETTEE
T ss_pred             hhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcc-cccccCCccccccccccCcceeeEe-ecccc
Confidence            3557788999999999999998753         56789999998764 5677899999999999999999996 56789


Q ss_pred             EEEcCCCCcceeeeccC-----------------CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeC--------------
Q 047260          574 RLWDAANPNFCSQAYTG-----------------HSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSI--------------  622 (784)
Q Consensus       574 ~IWdl~~~~~~~~~~~~-----------------h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl--------------  622 (784)
                      .+|+..++........+                 ..+....+.|+||+..++.....+..+..|++              
T Consensus       135 ~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~  214 (470)
T d2bgra1         135 YVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTV  214 (470)
T ss_dssp             EEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEE
T ss_pred             eEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEEEeeccCCCCCCeee
Confidence            99999887643322211                 12334568899999977666554443443332              


Q ss_pred             ---------------------CCCeeEEeec--------------CCeeEEEEecCCCEEEEEEC-CC-----cEEEEEC
Q 047260          623 ---------------------NPFLCTHITK--------------GGTAQVRFQPRIGQLLAAAS-DK-----VVSIFDI  661 (784)
Q Consensus       623 ---------------------~~~~~~~~~~--------------~~v~~v~fsp~~~~Ll~~s~-Dg-----~I~IwDl  661 (784)
                                           ..........              ..+..+.|.+++..++.... .+     .+..+|.
T Consensus       215 ~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d~  294 (470)
T d2bgra1         215 RVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDE  294 (470)
T ss_dssp             EEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEET
T ss_pred             eeccccccccCCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEEEeeccCCceEEEEEEecC
Confidence                                 1100000000              01234667777665444332 21     2344455


Q ss_pred             CCCeEEEEEe-------------CCCCCEEEEEEcCCC--CEEEEEe-CC--eEEEEeCCCCceEEEeccCCCceEEEEE
Q 047260          662 ETDRQTHSLQ-------------GHAELVNYICWDTNG--DYLASVS-QN--LVKVWSMASGECIQELSSNGNQFHSCVF  723 (784)
Q Consensus       662 ~t~~~i~~l~-------------~h~~~V~sl~~spdg--~~Lasgs-dd--~I~IwDl~t~~~i~~l~~~~~~I~sl~f  723 (784)
                      .++.......             .+...  ...|.+++  .+++... ++  .|.+|+...+.. ..+..+...|..+ +
T Consensus       295 ~tg~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~~~-~~lt~g~~~v~~~-~  370 (470)
T d2bgra1         295 SSGRWNCLVARQHIEMSTTGWVGRFRPS--EPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC-TFITKGTWEVIGI-E  370 (470)
T ss_dssp             TTTEEEECGGGCEEEECSSSCSSSSSCC--CCEECTTSSEEEEEEECTTSCEEEEEEETTCSCC-EESCCSSSCEEEE-E
T ss_pred             CCCcEEEEEEEeeeeeeccceeecccCC--CceeeecCCCcEEEEeccCcCceeEEEeccCCce-eeeccCCeeEEEE-E
Confidence            5554432211             11111  22344433  3344444 33  677777655444 4454555666666 4


Q ss_pred             ecCCCEEEE-EECCC------eEEEEECCCCceEE-----ecccCCceEEEEEeCCCCEEEE
Q 047260          724 HPSYSTLLV-VGGIS------SLELWNMAENKSMT-----IAAHENIISALAQSPVTGMVAS  773 (784)
Q Consensus       724 spdg~~L~s-~s~dg------~I~Iwdl~~~~~~~-----~~~h~~~V~slafspdg~~LaS  773 (784)
                      +++++.++. ++.++      .|+-.++..+....     +..|...+..++|||||++++.
T Consensus       371 ~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~s~~fSpdgky~~~  432 (470)
T d2bgra1         371 ALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQL  432 (470)
T ss_dssp             EECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTTTSTTTBCBEEEEECTTSSEEEE
T ss_pred             EECCCEEEEEEecCCCCcceEEEEEEECCCCCceeEecccccCCCCCEEEEEECCCCCEEEE
Confidence            445555543 33322      24444555544332     2367888999999999998763

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.44  E-value=1.2e-12  Score=143.35  Aligned_cols=254  Identities=12%  Similarity=0.062  Sum_probs=177.1

Q ss_pred             EEEEeCCCeEEEEECCCCceeeecCC------------------------------CCCCeEEEEEccCCCEEEEEe-CC
Q 047260          522 LASSGHDRKVVLWNMDTLQTESTPED------------------------------HKSVVTDVRFRPNSSQLATAS-VD  570 (784)
Q Consensus       522 Lasgs~Dg~I~IWd~~t~~~~~~l~~------------------------------h~~~It~i~fspdg~~Latgs-~D  570 (784)
                      +++++.+|.|+||++.+++.+.++..                              |.-.+....+.|||++|++.. .+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            56788999999999998887776531                              233345555678999987665 67


Q ss_pred             CeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeE------------------EEEeCCCCeeEEee-
Q 047260          571 KSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEI------------------QYWSINPFLCTHIT-  631 (784)
Q Consensus       571 g~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I------------------~iwDl~~~~~~~~~-  631 (784)
                      ..|.++|+++.+........+...+..++|+|+++..++++..+..+                  ..+|..+.+..... 
T Consensus        94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~  173 (441)
T d1qnia2          94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVI  173 (441)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEE
T ss_pred             CEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEe
Confidence            89999999987743333345667899999999998766655444333                  45777766554433 


Q ss_pred             -cCCeeEEEEecCCCEEEEEECC-----------------------------------------CcEEEEECCCCeEEEE
Q 047260          632 -KGGTAQVRFQPRIGQLLAAASD-----------------------------------------KVVSIFDIETDRQTHS  669 (784)
Q Consensus       632 -~~~v~~v~fsp~~~~Ll~~s~D-----------------------------------------g~I~IwDl~t~~~i~~  669 (784)
                       .+....+.++|+++++++++.+                                         +.+.+++....+.+..
T Consensus       174 v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~  253 (441)
T d1qnia2         174 VDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRY  253 (441)
T ss_dssp             ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEE
T ss_pred             cCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEEE
Confidence             3567789999999999888753                                         2344444444555666


Q ss_pred             EeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEeCCCCc-----------eEEEeccCCCceEEEEEecCCCEEEEEECC
Q 047260          670 LQGHAELVNYICWDTNGDYLASVS--QNLVKVWSMASGE-----------CIQELSSNGNQFHSCVFHPSYSTLLVVGGI  736 (784)
Q Consensus       670 l~~h~~~V~sl~~spdg~~Lasgs--dd~I~IwDl~t~~-----------~i~~l~~~~~~I~sl~fspdg~~L~s~s~d  736 (784)
                      +..... ...+.++|||+++++++  +++|.|||+.+..           ++.......-......|.+++..+.+...|
T Consensus       254 IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~d  332 (441)
T d1qnia2         254 IPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFID  332 (441)
T ss_dssp             ECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTT
T ss_pred             EeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEccccc
Confidence            655443 46789999999988776  4499999986521           222112222334567899999888888889


Q ss_pred             CeEEEEECCC----------CceE-Ee-----cccCCceEEEEEeCCCCEEEEEEC
Q 047260          737 SSLELWNMAE----------NKSM-TI-----AAHENIISALAQSPVTGMVASASH  776 (784)
Q Consensus       737 g~I~Iwdl~~----------~~~~-~~-----~~h~~~V~slafspdg~~LaSgs~  776 (784)
                      ..|..|++..          .... .+     .+|...+.+.+++|||++|++++.
T Consensus       333 s~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k  388 (441)
T d1qnia2         333 SQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSK  388 (441)
T ss_dssp             TEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEES
T ss_pred             ceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecCc
Confidence            9999999742          1122 22     477777888889999999999943

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.32  E-value=5.2e-11  Score=131.64  Aligned_cols=253  Identities=11%  Similarity=0.097  Sum_probs=160.8

Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCceeeec-----CCCCCCeEEEEEccCCCEEEEEeC---------CCeEEEEc
Q 047260          512 CCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTP-----EDHKSVVTDVRFRPNSSQLATASV---------DKSVRLWD  577 (784)
Q Consensus       512 ~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l-----~~h~~~It~i~fspdg~~Latgs~---------Dg~I~IWd  577 (784)
                      .+.|.+++.++..  .|+.|.+||+.+++....+     ..|...|.++.|+||+++|++++.         ++.+.|||
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d   98 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD   98 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred             CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEE
Confidence            4679999987764  5788999999999876544     345678999999999999998853         56789999


Q ss_pred             CCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---------------------CCee
Q 047260          578 AANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK---------------------GGTA  636 (784)
Q Consensus       578 l~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---------------------~~v~  636 (784)
                      +.+++  ...+..+...+..+.|+|||..++.+  .++.+++|+...+.......                     +...
T Consensus        99 ~~~~~--~~~l~~~~~~~~~~~~SPDG~~ia~~--~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~  174 (470)
T d2bgra1          99 LNKRQ--LITEERIPNNTQWVTWSPVGHKLAYV--WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYS  174 (470)
T ss_dssp             TTTTE--ECCSSCCCTTEEEEEECSSTTCEEEE--ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSB
T ss_pred             CCCCc--ccccccCCccccccccccCcceeeEe--ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCcc
Confidence            99865  45577888999999999999976664  47789999998776554432                     2234


Q ss_pred             EEEEecCCCEEEEEECCC-cEEEEEC-----------------------------------CCCeEEEEE----------
Q 047260          637 QVRFQPRIGQLLAAASDK-VVSIFDI-----------------------------------ETDRQTHSL----------  670 (784)
Q Consensus       637 ~v~fsp~~~~Ll~~s~Dg-~I~IwDl-----------------------------------~t~~~i~~l----------  670 (784)
                      .+.|+|+|++|+....|. .|..|++                                   ..+......          
T Consensus       175 ~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  254 (470)
T d2bgra1         175 ALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPAS  254 (470)
T ss_dssp             CEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHH
T ss_pred             ccEECCCCCccceeEecCCcCceEEEEeeccCCCCCCeeeeeccccccccCCcceEEEEECCCcceeeeccccccCCccc
Confidence            577999999999887642 2333322                                   111000000          


Q ss_pred             -eCCCCCEEEEEEcCCCCEEEEEe---CC--eEE--EEeCCCCceEEEec------cCCCc-----eEEEEEecCCC--E
Q 047260          671 -QGHAELVNYICWDTNGDYLASVS---QN--LVK--VWSMASGECIQELS------SNGNQ-----FHSCVFHPSYS--T  729 (784)
Q Consensus       671 -~~h~~~V~sl~~spdg~~Lasgs---dd--~I~--IwDl~t~~~i~~l~------~~~~~-----I~sl~fspdg~--~  729 (784)
                       ......+..+.|.+++.+++...   .+  .+.  .+|..++.......      .....     .....|.+++.  +
T Consensus       255 ~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  334 (470)
T d2bgra1         255 MLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFY  334 (470)
T ss_dssp             HHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEE
T ss_pred             cCCCCceEEEEEEcCCCceeEEEeeccCCceEEEEEEecCCCCcEEEEEEEeeeeeeccceeecccCCCceeeecCCCcE
Confidence             01112346678888887666543   22  333  44555554432211      00110     12234444443  3


Q ss_pred             EEEEECCC--eEEEEECCCCceEEecccCCceEEEEEeCCCCEE
Q 047260          730 LLVVGGIS--SLELWNMAENKSMTIAAHENIISALAQSPVTGMV  771 (784)
Q Consensus       730 L~s~s~dg--~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~L  771 (784)
                      ++....+|  .|++|+...+....+..+...|..+ ++++++.|
T Consensus       335 ~~~s~~dg~~~ly~~~~~g~~~~~lt~g~~~v~~~-~~~d~~~i  377 (470)
T d2bgra1         335 KIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGI-EALTSDYL  377 (470)
T ss_dssp             EEEECTTSCEEEEEEETTCSCCEESCCSSSCEEEE-EEECSSEE
T ss_pred             EEEeccCcCceeEEEeccCCceeeeccCCeeEEEE-EEECCCEE
Confidence            45555666  4666677777777776667777776 34444433

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.23  E-value=2.9e-09  Score=107.50  Aligned_cols=231  Identities=13%  Similarity=0.140  Sum_probs=159.4

Q ss_pred             eEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCC---eEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCc
Q 047260          530 KVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDK---SVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTD  606 (784)
Q Consensus       530 ~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg---~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~  606 (784)
                      .|.|.|.+ +.....+..+...+...+|+|||+.||....+.   .+.+.+.....  ...+..+...+....|+|++..
T Consensus        20 ~l~i~d~d-G~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~spdg~~   96 (269)
T d2hqsa1          20 ELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA--VRQVASFPRHNGAPAFSPDGSK   96 (269)
T ss_dssp             EEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC--EEEEECCSSCEEEEEECTTSSE
T ss_pred             EEEEEcCC-CCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCc--eeEEeeeecccccceecCCCCe
Confidence            47777876 444444555677889999999999999876543   46666666544  3445566788899999999998


Q ss_pred             EEEEEeCCCeEEEE--eCCCCeeEEeec--CCeeEEEEecCCCEEEEEEC-CC--cEEEEECCCCeEEEEEeCCCCCEEE
Q 047260          607 LFCFCDNDNEIQYW--SINPFLCTHITK--GGTAQVRFQPRIGQLLAAAS-DK--VVSIFDIETDRQTHSLQGHAELVNY  679 (784)
Q Consensus       607 ll~sgs~dg~I~iw--Dl~~~~~~~~~~--~~v~~v~fsp~~~~Ll~~s~-Dg--~I~IwDl~t~~~i~~l~~h~~~V~s  679 (784)
                      ++.....++...++  ............  .......+++++..++..+. ++  .|.++++..+... .+..+......
T Consensus        97 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~-~~~~~~~~~~~  175 (269)
T d2hqsa1          97 LAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQD  175 (269)
T ss_dssp             EEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSSSEEEE
T ss_pred             eeEeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccce-eeecccccccc
Confidence            88777666544333  333333333322  33344567777777666654 44  4666666655433 33445667788


Q ss_pred             EEEcCCCCEEEEEeCC----eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECC---CeEEEEECCCCceEEe
Q 047260          680 ICWDTNGDYLASVSQN----LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGI---SSLELWNMAENKSMTI  752 (784)
Q Consensus       680 l~~spdg~~Lasgsdd----~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~d---g~I~Iwdl~~~~~~~~  752 (784)
                      ..|+|+++.++..+.+    .|.+.|...+..  .+...........|+|||+.|+..+..   ..|+++++..+....+
T Consensus       176 ~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~l  253 (269)
T d2hqsa1         176 ADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARL  253 (269)
T ss_dssp             EEECTTSSEEEEEEECSSCEEEEEEETTTCCE--EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEEC
T ss_pred             cccccccceeEEEeecCCceeeeEeecccccc--eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEE
Confidence            8999999998877632    666667666543  333445566788999999998876654   3799999999988888


Q ss_pred             cccCCceEEEEEeC
Q 047260          753 AAHENIISALAQSP  766 (784)
Q Consensus       753 ~~h~~~V~slafsp  766 (784)
                      ....+.+...+|+|
T Consensus       254 t~~~g~~~~p~WSP  267 (269)
T d2hqsa1         254 PATDGQVKFPAWSP  267 (269)
T ss_dssp             CCSSSEEEEEEECC
T ss_pred             eCCCCcEEeEEeCC
Confidence            88888899999998

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.18  E-value=2.7e-10  Score=124.39  Aligned_cols=243  Identities=12%  Similarity=0.075  Sum_probs=160.3

Q ss_pred             ecCCCceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCceeeecC-CCCCCeEEEEEccCCC--EEEEEeCCC--------
Q 047260          504 RSRNSKVTCCHFSSDGKLLASSG-HDRKVVLWNMDTLQTESTPE-DHKSVVTDVRFRPNSS--QLATASVDK--------  571 (784)
Q Consensus       504 ~~H~~~V~~l~fspdg~~Lasgs-~Dg~I~IWd~~t~~~~~~l~-~h~~~It~i~fspdg~--~Latgs~Dg--------  571 (784)
                      ..|.-.+.+..++|||++|++.. .++.|.++|+++++....+. .+...+..++|+|+++  |++..+.+.        
T Consensus        68 d~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~  147 (441)
T d1qnia2          68 DCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGT  147 (441)
T ss_dssp             CBCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSS
T ss_pred             cccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCccc
Confidence            44666777888899999986654 67899999999998887664 4677899999999988  444444332        


Q ss_pred             ---------eEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCC----------------------------
Q 047260          572 ---------SVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDND----------------------------  614 (784)
Q Consensus       572 ---------~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~d----------------------------  614 (784)
                               .+..+|..+.+.......  ...+..+.|+|++.++++++...                            
T Consensus       148 ~~~~~~~~~~~~~iD~~t~~v~~qI~v--~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~  225 (441)
T d1qnia2         148 DFSLDNSYTMFTAIDAETMDVAWQVIV--DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAA  225 (441)
T ss_dssp             CCCGGGEEEEEEEEETTTCSEEEEEEE--SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHH
T ss_pred             ccccccccceEEeecCccceeeEEEec--CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEE
Confidence                     234567766553333222  24578899999999888777542                            


Q ss_pred             ------------CeEEEEeCCCCeeEEeec--CCeeEEEEecCCCEEEEEEC-CCcEEEEECCCCeE-----------EE
Q 047260          615 ------------NEIQYWSINPFLCTHITK--GGTAQVRFQPRIGQLLAAAS-DKVVSIFDIETDRQ-----------TH  668 (784)
Q Consensus       615 ------------g~I~iwDl~~~~~~~~~~--~~v~~v~fsp~~~~Ll~~s~-Dg~I~IwDl~t~~~-----------i~  668 (784)
                                  +.+.+++......+....  .....+.++|+|+++++++. +++|.+||+++...           +.
T Consensus       226 ~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~  305 (441)
T d1qnia2         226 VKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIV  305 (441)
T ss_dssp             HHTTCCBCCTTCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEE
T ss_pred             ecCCCEEEeCCCCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEE
Confidence                        223333333322232222  33466899999999887765 89999999865221           11


Q ss_pred             EEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCC----------CceEEEe-----ccCCCceEEEEEecCCCEEEE
Q 047260          669 SLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMAS----------GECIQEL-----SSNGNQFHSCVFHPSYSTLLV  732 (784)
Q Consensus       669 ~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t----------~~~i~~l-----~~~~~~I~sl~fspdg~~L~s  732 (784)
                      ......-......|+++|..+.+..-+ .|..|++..          ...+..+     .+|...+.+.+++|+|++|++
T Consensus       306 ~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s  385 (441)
T d1qnia2         306 AEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVV  385 (441)
T ss_dssp             ECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEE
T ss_pred             eecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEe
Confidence            111111223456899999888777755 999999741          1234444     355555666678999999999


Q ss_pred             EEC---CC----------eEEEEECCCCc
Q 047260          733 VGG---IS----------SLELWNMAENK  748 (784)
Q Consensus       733 ~s~---dg----------~I~Iwdl~~~~  748 (784)
                      ++.   |.          .-.+.|+...+
T Consensus       386 ~~k~s~dr~~~~g~~~~~~~q~~~i~~~~  414 (441)
T d1qnia2         386 LSKFSKDRFLPVGPLHPENDQLIDISGEE  414 (441)
T ss_dssp             EESCCGGGSCCCSSSCCEEEEEEECSSSS
T ss_pred             cCccccccCcCCCCCCCccceeEEecCCe
Confidence            954   42          35677777544

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.12  E-value=2.1e-08  Score=107.27  Aligned_cols=242  Identities=11%  Similarity=0.073  Sum_probs=151.8

Q ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC-ceeeec-CCCCCCeEEEEEccCCCEEE--EEeC-CCeEEEEcCCC
Q 047260          506 RNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTL-QTESTP-EDHKSVVTDVRFRPNSSQLA--TASV-DKSVRLWDAAN  580 (784)
Q Consensus       506 H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~-~~~~~l-~~h~~~It~i~fspdg~~La--tgs~-Dg~I~IWdl~~  580 (784)
                      +...+.-|+|++++++|+++.. +.+..|.+... ...... .........+.++++++.++  ++.. .+.|..+.+..
T Consensus        38 ~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~  116 (365)
T d1jofa_          38 QDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccC
Confidence            4455677999999999988764 56888877632 222211 12233456678888887443  3222 34555444322


Q ss_pred             Ccc----------------eeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe-eE--E---ee--cCCee
Q 047260          581 PNF----------------CSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFL-CT--H---IT--KGGTA  636 (784)
Q Consensus       581 ~~~----------------~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~-~~--~---~~--~~~v~  636 (784)
                      ...                ...........+.++.|+|++++++++......|.+|++.... ..  .   ..  .....
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr  196 (365)
T d1jofa_         117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR  196 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred             CCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceE
Confidence            110                0011112233578999999999888877777789998875422 11  1   11  24567


Q ss_pred             EEEEecCCCEEEEEEC-CCcEEEEECCCCeE--EEE---Ee--------------CCCCCEEEEEEcCCCCEEEEEe--C
Q 047260          637 QVRFQPRIGQLLAAAS-DKVVSIFDIETDRQ--THS---LQ--------------GHAELVNYICWDTNGDYLASVS--Q  694 (784)
Q Consensus       637 ~v~fsp~~~~Ll~~s~-Dg~I~IwDl~t~~~--i~~---l~--------------~h~~~V~sl~~spdg~~Lasgs--d  694 (784)
                      .++|+|+++++++... ++.|.+||+...+.  +..   +.              .+......+.++|+|++|+++.  +
T Consensus       197 ~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~  276 (365)
T d1jofa_         197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN  276 (365)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred             EEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccC
Confidence            8999999999988887 79999999876532  211   11              0112356789999999998874  2


Q ss_pred             C-----eEEEEeCCCCceEE------EeccCCCceEEEEEec-CCCEEEEEEC-CCeEEEEECCCCc
Q 047260          695 N-----LVKVWSMASGECIQ------ELSSNGNQFHSCVFHP-SYSTLLVVGG-ISSLELWNMAENK  748 (784)
Q Consensus       695 d-----~I~IwDl~t~~~i~------~l~~~~~~I~sl~fsp-dg~~L~s~s~-dg~I~Iwdl~~~~  748 (784)
                      +     .|.+|++.....+.      ...........++++| +|++|+++.. ++.|.+|+++...
T Consensus       277 ~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~  343 (365)
T d1jofa_         277 KFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             STTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred             CCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence            2     47778776532222      1122345567899998 7898888764 5799999886554

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.11  E-value=4.5e-08  Score=98.48  Aligned_cols=218  Identities=16%  Similarity=0.099  Sum_probs=144.1

Q ss_pred             cCCCceEEEEEcCCCCEEEEEeCCC---eEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCC-CeEEEEcCCC
Q 047260          505 SRNSKVTCCHFSSDGKLLASSGHDR---KVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVD-KSVRLWDAAN  580 (784)
Q Consensus       505 ~H~~~V~~l~fspdg~~Lasgs~Dg---~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~D-g~I~IWdl~~  580 (784)
                      .+...+..-+|||||+.||....+.   .+.+.+...+... .+..+...+....|+|+++.|+..... +...++....
T Consensus        36 ~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~  114 (269)
T d2hqsa1          36 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL  114 (269)
T ss_dssp             EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred             cCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee-EEeeeecccccceecCCCCeeeEeeecCCccceeeccc
Confidence            4566788999999999998765443   4777777765554 444678888999999999998876643 3323322222


Q ss_pred             CcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCe--EEEEeCCCCeeEEeec--CCeeEEEEecCCCEEEEEECC-Cc
Q 047260          581 PNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNE--IQYWSINPFLCTHITK--GGTAQVRFQPRIGQLLAAASD-KV  655 (784)
Q Consensus       581 ~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~--I~iwDl~~~~~~~~~~--~~v~~v~fsp~~~~Ll~~s~D-g~  655 (784)
                      ...................+++++..++++...++.  |.+.++..........  .......|+|++..++..+.+ +.
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~  194 (269)
T d2hqsa1         115 ASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQ  194 (269)
T ss_dssp             TTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSC
T ss_pred             ccccceeeeeccccccccccccccccceecccccCCceEeeeecccccceeeecccccccccccccccceeEEEeecCCc
Confidence            221223333444555667788888877777776664  5555665544333322  445567899999998887764 34


Q ss_pred             --EEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--CC--eEEEEeCCCCceEEEeccCCCceEEEEEecC
Q 047260          656 --VSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVS--QN--LVKVWSMASGECIQELSSNGNQFHSCVFHPS  726 (784)
Q Consensus       656 --I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgs--dd--~I~IwDl~t~~~i~~l~~~~~~I~sl~fspd  726 (784)
                        |.++|...+..  .+..+........|+|||+.|+..+  .+  .|.++++..+.. ..+......+...+|+|-
T Consensus       195 ~~i~~~~~~~~~~--~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~-~~lt~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         195 QHIAKQDLATGGV--QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK-ARLPATDGQVKFPAWSPY  268 (269)
T ss_dssp             EEEEEEETTTCCE--EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE-EECCCSSSEEEEEEECCC
T ss_pred             eeeeEeecccccc--eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCE-EEEeCCCCcEEeEEeCCC
Confidence              44455554443  3334556677889999999887655  22  899999987654 456666677888899983

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.10  E-value=5.9e-09  Score=111.66  Aligned_cols=262  Identities=9%  Similarity=0.105  Sum_probs=160.2

Q ss_pred             EEEEeC--CCeEEEEE--CCCCcee--ee-cCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeee-ccCCCC
Q 047260          522 LASSGH--DRKVVLWN--MDTLQTE--ST-PEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQA-YTGHSS  593 (784)
Q Consensus       522 Lasgs~--Dg~I~IWd--~~t~~~~--~~-l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~-~~~h~~  593 (784)
                      |++|+.  .+.|.++.  .++++..  .. .......+..|+|++++++|++++. +.+..|.+......... ......
T Consensus         5 l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~   83 (365)
T d1jofa_           5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGG   83 (365)
T ss_dssp             EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCS
T ss_pred             EEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCC
Confidence            555643  44565544  4444432  11 1234556778999999999988865 56788877643322211 112233


Q ss_pred             CeEEEEEcCCCCcEEEEEe--CCCeEEEEeCCC------------C-e---eEE----eecCCeeEEEEecCCCEEEEEE
Q 047260          594 PIMSLDFHPKKTDLFCFCD--NDNEIQYWSINP------------F-L---CTH----ITKGGTAQVRFQPRIGQLLAAA  651 (784)
Q Consensus       594 ~V~sl~~sp~~~~ll~sgs--~dg~I~iwDl~~------------~-~---~~~----~~~~~v~~v~fsp~~~~Ll~~s  651 (784)
                      ....+.+++++..++++..  ..+.|..+.+..            . .   ...    ....++.++.|+|++++++++.
T Consensus        84 ~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d  163 (365)
T d1jofa_          84 HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSAD  163 (365)
T ss_dssp             SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE
T ss_pred             CcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEee
Confidence            4566778888875555443  234555443321            0 0   000    0113567899999999999987


Q ss_pred             C-CCcEEEEECCCC-eE--EEEEe--CCCCCEEEEEEcCCCCEEEEEeCC--eEEEEeCCCCceE--EE---ecc-----
Q 047260          652 S-DKVVSIFDIETD-RQ--THSLQ--GHAELVNYICWDTNGDYLASVSQN--LVKVWSMASGECI--QE---LSS-----  713 (784)
Q Consensus       652 ~-Dg~I~IwDl~t~-~~--i~~l~--~h~~~V~sl~~spdg~~Lasgsdd--~I~IwDl~t~~~i--~~---l~~-----  713 (784)
                      . ...|.+|+.... ..  ...+.  ......+.++|+|+++++++..+.  .|.+|++..+...  ..   +..     
T Consensus       164 ~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~  243 (365)
T d1jofa_         164 LTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGI  243 (365)
T ss_dssp             TTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTC
T ss_pred             CCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccc
Confidence            6 467888876543 22  22222  234578899999999998887743  9999998765422  21   110     


Q ss_pred             ---------CCCceEEEEEecCCCEEEEEECC------CeEEEEECCCCceE----Ee---cccCCceEEEEEeC-CCCE
Q 047260          714 ---------NGNQFHSCVFHPSYSTLLVVGGI------SSLELWNMAENKSM----TI---AAHENIISALAQSP-VTGM  770 (784)
Q Consensus       714 ---------~~~~I~sl~fspdg~~L~s~s~d------g~I~Iwdl~~~~~~----~~---~~h~~~V~slafsp-dg~~  770 (784)
                               .......+.++|++++|+++...      +.|..|++.....+    .+   ........+++++| +|++
T Consensus       244 ~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~  323 (365)
T d1jofa_         244 PDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEW  323 (365)
T ss_dssp             CCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTE
T ss_pred             cccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCE
Confidence                     11224578999999999887531      24777887654322    11   12334567899998 7887


Q ss_pred             EEEEE-CCCcEEEeC
Q 047260          771 VASAS-HDSSVKLWK  784 (784)
Q Consensus       771 LaSgs-~DG~V~IWd  784 (784)
                      |++++ .++.|.||+
T Consensus       324 l~va~~~s~~v~v~~  338 (365)
T d1jofa_         324 MAITDDQEGWLEIYR  338 (365)
T ss_dssp             EEEECSSSCEEEEEE
T ss_pred             EEEEeCCCCeEEEEE
Confidence            77764 678899984

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.07  E-value=3.5e-08  Score=100.00  Aligned_cols=236  Identities=11%  Similarity=0.024  Sum_probs=153.3

Q ss_pred             CceEEEEEcCCCCEEEEE-eCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceee
Q 047260          508 SKVTCCHFSSDGKLLASS-GHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQ  586 (784)
Q Consensus       508 ~~V~~l~fspdg~~Lasg-s~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~  586 (784)
                      ..-..++++++|+++++. +..+.|..++............-......|+++++++++++....+.|++++-.+.. ...
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~-~~~   92 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQ-TVL   92 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCC-EEC
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccce-eee
Confidence            345899999999966654 455777777766443333222223345788999999888777777777777655543 222


Q ss_pred             eccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEee---cCCeeEEEEecCCCEEEEEECCCcEEEEECCC
Q 047260          587 AYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHIT---KGGTAQVRFQPRIGQLLAAASDKVVSIFDIET  663 (784)
Q Consensus       587 ~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~---~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t  663 (784)
                      .. .....+.+|++.+++. ++++-..+..+..++..........   ......+++.++++.+++...++.|..+|...
T Consensus        93 ~~-~~~~~p~~iavd~~g~-i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~  170 (260)
T d1rwia_          93 PF-DGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES  170 (260)
T ss_dssp             CC-CSCCSEEEEEECTTCC-EEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTT
T ss_pred             ee-eeeeecccccccccce-eEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeecccccccccccccc
Confidence            22 2235678999999876 5665566777888877654332221   13457899999988777767788999999876


Q ss_pred             CeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEE
Q 047260          664 DRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELW  742 (784)
Q Consensus       664 ~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iw  742 (784)
                      ................|+++++|+++++...+ .|..++.............-.....+++++++..+++-..+++|+.+
T Consensus       171 ~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i  250 (260)
T d1rwia_         171 NNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKL  250 (260)
T ss_dssp             CCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEE
T ss_pred             ceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEE
Confidence            54443333445667899999999988877655 78888765543222112223456889999998766665556677766


Q ss_pred             ECCC
Q 047260          743 NMAE  746 (784)
Q Consensus       743 dl~~  746 (784)
                      +...
T Consensus       251 ~~~~  254 (260)
T d1rwia_         251 TSLE  254 (260)
T ss_dssp             CCCG
T ss_pred             eCCC
Confidence            5443

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.05  E-value=2.8e-08  Score=100.73  Aligned_cols=232  Identities=9%  Similarity=-0.029  Sum_probs=153.2

Q ss_pred             CCeEEEEEccCCCEEEEEe-CCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeE
Q 047260          550 SVVTDVRFRPNSSQLATAS-VDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCT  628 (784)
Q Consensus       550 ~~It~i~fspdg~~Latgs-~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~  628 (784)
                      ..-..|++.++|++.++.. ..+.|..++............+ ......+++.+++. ++++...++.+++++......+
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~p~gvav~~~g~-i~v~d~~~~~i~~~~~~~~~~~   91 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNG-LYQPQGLAVDGAGT-VYVTDFNNRVVTLAAGSNNQTV   91 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCS-CCSCCCEEECTTCC-EEEEETTTEEEEECTTCSCCEE
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCC-ccCceEEEEcCCCC-EEEeeeeeceeeeeeeccceee
Confidence            3458999999999766654 4577777777654433332322 23457889999876 6666666667777666555544


Q ss_pred             Eeec--CCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCC
Q 047260          629 HITK--GGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASG  705 (784)
Q Consensus       629 ~~~~--~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~  705 (784)
                      ....  .....+++.++++.+++-..+..+..++...................++++++++++++...+ .|..+|....
T Consensus        92 ~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~  171 (260)
T d1rwia_          92 LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN  171 (260)
T ss_dssp             CCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTC
T ss_pred             eeeeeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccccccccccccccc
Confidence            4333  456789999988766655556777777776544322222223455789999999987776644 8999997765


Q ss_pred             ceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceEEec-ccCCceEEEEEeCCCCEEEEEECCCcEEEe
Q 047260          706 ECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIA-AHENIISALAQSPVTGMVASASHDSSVKLW  783 (784)
Q Consensus       706 ~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~~-~h~~~V~slafspdg~~LaSgs~DG~V~IW  783 (784)
                      ...............+++.+++..+++....+.|..++.......... ..-.....|+++++|.++++-..+++|+.+
T Consensus       172 ~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i  250 (260)
T d1rwia_         172 NQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKL  250 (260)
T ss_dssp             CEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEE
T ss_pred             eeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEE
Confidence            443332244456788999999987666666788988887665444332 333567899999999888776667777654

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.02  E-value=1.4e-07  Score=98.58  Aligned_cols=240  Identities=10%  Similarity=0.098  Sum_probs=156.8

Q ss_pred             CCCceEEEEEcCCCCEEEEEeC-------CCeEEEEECCCCceeeecCCC----CCCeEEEEEccCCCEEEEEeCCCeEE
Q 047260          506 RNSKVTCCHFSSDGKLLASSGH-------DRKVVLWNMDTLQTESTPEDH----KSVVTDVRFRPNSSQLATASVDKSVR  574 (784)
Q Consensus       506 H~~~V~~l~fspdg~~Lasgs~-------Dg~I~IWd~~t~~~~~~l~~h----~~~It~i~fspdg~~Latgs~Dg~I~  574 (784)
                      .-.....++|.++|+++++...       +|+|..||..++.........    ...-..+.|.++++.|+++.....|.
T Consensus        16 ~~~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~   95 (314)
T d1pjxa_          16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLL   95 (314)
T ss_dssp             CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEE
T ss_pred             CCCCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEE
Confidence            3344677899999997776432       467999998877654433221    12356899999999888888778888


Q ss_pred             EEcCCCCcceeeeccCCC---CCeEEEEEcCCCCcEEEEEeC---------------CCeEEEEeCCCCee-EEeecCCe
Q 047260          575 LWDAANPNFCSQAYTGHS---SPIMSLDFHPKKTDLFCFCDN---------------DNEIQYWSINPFLC-THITKGGT  635 (784)
Q Consensus       575 IWdl~~~~~~~~~~~~h~---~~V~sl~~sp~~~~ll~sgs~---------------dg~I~iwDl~~~~~-~~~~~~~v  635 (784)
                      .+|.+.............   .....+++.+++. ++++-..               .|.|..++.+.... +...-...
T Consensus        96 ~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~-lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~~~~~~~~~p  174 (314)
T d1pjxa_          96 VVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTAFQFP  174 (314)
T ss_dssp             EEETTSCEEECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEEEESSE
T ss_pred             EEeCCCcEEEEEeccccccccCCCcEEEECCCCC-EEEecCccCcccccccceeccCCceEEEEeecCceeEeeCCccee
Confidence            888876442221111111   1357799999986 4444321               23455555443211 11112344


Q ss_pred             eEEEEecCCC----EEEEEE-CCCcEEEEECCCCeEEE------EEeC-CCCCEEEEEEcCCCCEEEEEe-CCeEEEEeC
Q 047260          636 AQVRFQPRIG----QLLAAA-SDKVVSIFDIETDRQTH------SLQG-HAELVNYICWDTNGDYLASVS-QNLVKVWSM  702 (784)
Q Consensus       636 ~~v~fsp~~~----~Ll~~s-~Dg~I~IwDl~t~~~i~------~l~~-h~~~V~sl~~spdg~~Lasgs-dd~I~IwDl  702 (784)
                      +.++|++++.    .|+++. ..+.|..||+.....+.      .+.. +......++++.+|+++++.. .+.|.+||.
T Consensus       175 NGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp  254 (314)
T d1pjxa_         175 NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGP  254 (314)
T ss_dssp             EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred             eeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeC
Confidence            6788988765    455554 47889999876432221      2222 223456799999999877765 459999999


Q ss_pred             CCCceEEEeccCCCceEEEEEecCCCEEEEE-ECCCeEEEEECCC
Q 047260          703 ASGECIQELSSNGNQFHSCVFHPSYSTLLVV-GGISSLELWNMAE  746 (784)
Q Consensus       703 ~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~-s~dg~I~Iwdl~~  746 (784)
                      ..++.+..+..+.....+|+|.|+++.|++. +.++.|..+++..
T Consensus       255 ~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         255 DGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             TCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             CCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence            9888877777776788999999999866555 4567888888654

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.02  E-value=5.2e-08  Score=100.97  Aligned_cols=234  Identities=9%  Similarity=0.046  Sum_probs=156.5

Q ss_pred             eeEEeEeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEE
Q 047260          497 FCEVGCIRSRNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLW  576 (784)
Q Consensus       497 ~~~i~~l~~H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IW  576 (784)
                      .+.+..+.. ...+..++++|||+++++...+++|..|+... + ...+......+.+++|.++|+++++...++.+.+|
T Consensus        18 ~~v~~~~p~-~~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~-~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~   94 (302)
T d2p4oa1          18 AKIITSFPV-NTFLENLASAPDGTIFVTNHEVGEIVSITPDG-N-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVV   94 (302)
T ss_dssp             EEEEEEECT-TCCEEEEEECTTSCEEEEETTTTEEEEECTTC-C-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred             ccEEEECCC-CCCcCCEEECCCCCEEEEeCCCCEEEEEeCCC-C-EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEE
Confidence            344455543 23588999999999999999999999998664 3 23344566789999999999999998888888888


Q ss_pred             cCCCCcceeeec--cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec-------------CCeeEEEEe
Q 047260          577 DAANPNFCSQAY--TGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK-------------GGTAQVRFQ  641 (784)
Q Consensus       577 dl~~~~~~~~~~--~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~-------------~~v~~v~fs  641 (784)
                      +..........+  ......+..+++.+++. ++++.+.++.+..+|...........             .....+.+ 
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~-~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~-  172 (302)
T d2p4oa1          95 SLVKSDGTVETLLTLPDAIFLNGITPLSDTQ-YLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKR-  172 (302)
T ss_dssp             EEECTTSCEEEEEECTTCSCEEEEEESSSSE-EEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEE-
T ss_pred             EecccccceeeccccCCccccceeEEccCCC-EEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccc-
Confidence            765433222222  23445688999999875 67777778899999887654332211             12234444 


Q ss_pred             cCCCEEEEEEC-CCcEEEEECCCCeEEEE--EeCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEeCCCCc-eEEEeccCCC
Q 047260          642 PRIGQLLAAAS-DKVVSIFDIETDRQTHS--LQGHAELVNYICWDTNGDYLASVS-QNLVKVWSMASGE-CIQELSSNGN  716 (784)
Q Consensus       642 p~~~~Ll~~s~-Dg~I~IwDl~t~~~i~~--l~~h~~~V~sl~~spdg~~Lasgs-dd~I~IwDl~t~~-~i~~l~~~~~  716 (784)
                       ++..++.+.. .+.|..++.........  ..........++++++|.++++.. ++.|..++..... .+......-.
T Consensus       173 -~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~  251 (302)
T d2p4oa1         173 -FGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVI  251 (302)
T ss_dssp             -ETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCT
T ss_pred             -cCCceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecCCCCC
Confidence             3455555544 78899898765432211  111233456799999999777765 4488888876432 2333344455


Q ss_pred             ceEEEEE---ecCCCEEEEEECC
Q 047260          717 QFHSCVF---HPSYSTLLVVGGI  736 (784)
Q Consensus       717 ~I~sl~f---spdg~~L~s~s~d  736 (784)
                      ..++++|   .+|++.|++++..
T Consensus       252 ~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         252 GSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             TEEEEEECCSTTTTTEEEEEECT
T ss_pred             CceEEEEcCCCCCCCEEEEECCC
Confidence            6789999   6788888877654

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.97  E-value=8.5e-07  Score=92.54  Aligned_cols=228  Identities=13%  Similarity=0.108  Sum_probs=153.1

Q ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCC----CeEEEEcCCCC
Q 047260          506 RNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVD----KSVRLWDAANP  581 (784)
Q Consensus       506 H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~D----g~I~IWdl~~~  581 (784)
                      ....+..++|.++|+++++-..++.|+.|+.++......+.........|+|+++|+++++...+    +.|...+....
T Consensus        38 ~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~  117 (319)
T d2dg1a1          38 KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD  117 (319)
T ss_dssp             SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred             CCcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCc
Confidence            44456789999999977777788999999998877666665666778999999999887775432    33555555543


Q ss_pred             cceeeecc--CCCCCeEEEEEcCCCCcEEEEEeC------CCeEEEEeCCCCeeEEe--ecCCeeEEEEecCCCEEEEEE
Q 047260          582 NFCSQAYT--GHSSPIMSLDFHPKKTDLFCFCDN------DNEIQYWSINPFLCTHI--TKGGTAQVRFQPRIGQLLAAA  651 (784)
Q Consensus       582 ~~~~~~~~--~h~~~V~sl~~sp~~~~ll~sgs~------dg~I~iwDl~~~~~~~~--~~~~v~~v~fsp~~~~Ll~~s  651 (784)
                      .. .....  .-...+..+++.++|. ++++...      .+.+..++.+.......  --.....++|+|+++.|+++.
T Consensus       118 ~~-~~~~~~~~~~~~~nd~~~d~~G~-l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad  195 (319)
T d2dg1a1         118 NL-QDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTE  195 (319)
T ss_dssp             SC-EEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEE
T ss_pred             ee-eeeccCCCcccCCcceeEEeccc-eeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEec
Confidence            32 22111  1123577899999987 5554322      23466666554332222  224457799999999887776


Q ss_pred             C-CCcEEEEECCCC-eEEE----E---EeCCCCCEEEEEEcCCCCEEEEEeC-CeEEEEeCCCCceEEEeccC------C
Q 047260          652 S-DKVVSIFDIETD-RQTH----S---LQGHAELVNYICWDTNGDYLASVSQ-NLVKVWSMASGECIQELSSN------G  715 (784)
Q Consensus       652 ~-Dg~I~IwDl~t~-~~i~----~---l~~h~~~V~sl~~spdg~~Lasgsd-d~I~IwDl~t~~~i~~l~~~------~  715 (784)
                      . .+.|..||+... ....    .   ..........++++.+|++.++... +.|.+||. .|+.+.++...      .
T Consensus       196 ~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~  274 (319)
T d2dg1a1         196 TTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHM  274 (319)
T ss_dssp             GGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCS
T ss_pred             ccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcC
Confidence            5 789999998642 1111    1   1112233567999999998777665 49999995 78888887643      3


Q ss_pred             CceEEEEEecCCCEEEEEECC
Q 047260          716 NQFHSCVFHPSYSTLLVVGGI  736 (784)
Q Consensus       716 ~~I~sl~fspdg~~L~s~s~d  736 (784)
                      ..+.+++|.++...+++.+.+
T Consensus       275 ~~~~~~~~~~~~~~~~~t~~~  295 (319)
T d2dg1a1         275 LRSTHPQFIPGTNQLIICSND  295 (319)
T ss_dssp             CBCCEEEECTTSCEEEEEEEC
T ss_pred             ceeeeEEEeCCCCEEEEEcCC
Confidence            457899999988877776653

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.96  E-value=1.1e-06  Score=89.76  Aligned_cols=232  Identities=11%  Similarity=0.139  Sum_probs=160.4

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCC------CCCCeEEEEEccCC-CEEEEE-eCCCeEEEEcCCC
Q 047260          509 KVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPED------HKSVVTDVRFRPNS-SQLATA-SVDKSVRLWDAAN  580 (784)
Q Consensus       509 ~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~------h~~~It~i~fspdg-~~Latg-s~Dg~I~IWdl~~  580 (784)
                      ....++++++|+++++-..+..|++||.+ ++.+..+..      .......+++..+. .++++. +.++.|.+++...
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g  102 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYG  102 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTS
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccccc
Confidence            36889999999988887778899999976 666655521      12234566666544 344433 3455777777653


Q ss_pred             CcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEee-----cCCeeEEEEecCCCEEEEEECCCc
Q 047260          581 PNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHIT-----KGGTAQVRFQPRIGQLLAAASDKV  655 (784)
Q Consensus       581 ~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~-----~~~v~~v~fsp~~~~Ll~~s~Dg~  655 (784)
                       ......-.........+++.+++. ++++....+.+.+++.+... +..+     ......+++.+++..+++....+.
T Consensus       103 -~~~~~~~~~~~~~p~~~avd~~G~-i~v~~~~~~~~~~~~~~g~~-~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~  179 (279)
T d1q7fa_         103 -QFVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQNGNV-LHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHC  179 (279)
T ss_dssp             -CEEEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTTSCE-EEEEECTTTCSSEEEEEECSSSEEEEEEGGGTE
T ss_pred             -cceeecCCCcccccceeccccCCc-EEEEeeccceeeEeccCCce-eecccccccccccceeeeccceeEEeeeccccc
Confidence             323333234456678899998886 66666667788888876433 3332     144567888888877666666899


Q ss_pred             EEEEECCCCeEEEEEe--CCCCCEEEEEEcCCCCEEEEEe-CC-eEEEEeCCCCceEEEeccC--CCceEEEEEecCCCE
Q 047260          656 VSIFDIETDRQTHSLQ--GHAELVNYICWDTNGDYLASVS-QN-LVKVWSMASGECIQELSSN--GNQFHSCVFHPSYST  729 (784)
Q Consensus       656 I~IwDl~t~~~i~~l~--~h~~~V~sl~~spdg~~Lasgs-dd-~I~IwDl~t~~~i~~l~~~--~~~I~sl~fspdg~~  729 (784)
                      |.+||.. ++.+..+.  +.......|+++++|+++++-. .+ .|.+|+ .+|+.+.++...  ......+++.+++. 
T Consensus       180 V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~~dG~-  256 (279)
T d1q7fa_         180 VKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMDDGS-  256 (279)
T ss_dssp             EEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEETTTE-
T ss_pred             eeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEEeCCCc-
Confidence            9999975 56666663  3445678999999999887754 33 799998 468887777533  34578999999986 


Q ss_pred             EEEEECCCeEEEEECCCC
Q 047260          730 LLVVGGISSLELWNMAEN  747 (784)
Q Consensus       730 L~s~s~dg~I~Iwdl~~~  747 (784)
                      |+++..+.+|++|.....
T Consensus       257 l~V~~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         257 VVLASKDYRLYIYRYVQL  274 (279)
T ss_dssp             EEEEETTTEEEEEECSCC
T ss_pred             EEEEeCCCeEEEEEeeee
Confidence            566678889999998654

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.95  E-value=8e-08  Score=99.54  Aligned_cols=221  Identities=10%  Similarity=-0.026  Sum_probs=149.3

Q ss_pred             CeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCC--CeeE
Q 047260          551 VVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINP--FLCT  628 (784)
Q Consensus       551 ~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~--~~~~  628 (784)
                      .+..+++.|||+++++...+++|..||....   ...+......+.+++|.+++. ++++...++.+..|+...  ....
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~---~~~~~~~~~~~~gla~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~  104 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGN---QQIHATVEGKVSGLAFTSNGD-LVATGWNADSIPVVSLVKSDGTVE  104 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCC---EEEEEECSSEEEEEEECTTSC-EEEEEECTTSCEEEEEECTTSCEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCC---EEEEEcCCCCcceEEEcCCCC-eEEEecCCceEEEEEeccccccee
Confidence            5788999999999999999999999986643   233445567899999999987 777777778787777643  2222


Q ss_pred             E--eec--CCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeC----------CCCCEEEEEEcCCCCEEEEEe-
Q 047260          629 H--ITK--GGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQG----------HAELVNYICWDTNGDYLASVS-  693 (784)
Q Consensus       629 ~--~~~--~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~----------h~~~V~sl~~spdg~~Lasgs-  693 (784)
                      .  ...  .....+.+.+++..+++.+.++.|..+|...+........          .......+.++.  ..++.+. 
T Consensus       105 ~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~--~~l~~~~~  182 (302)
T d2p4oa1         105 TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG--NFLYVSNT  182 (302)
T ss_dssp             EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET--TEEEEEET
T ss_pred             eccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC--CceeeecC
Confidence            1  111  4467888999987777777789999999887754433221          122455666654  4444443 


Q ss_pred             -CCeEEEEeCCCCceEE--EeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceEEe--cccCCceEEEEE---e
Q 047260          694 -QNLVKVWSMASGECIQ--ELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTI--AAHENIISALAQ---S  765 (784)
Q Consensus       694 -dd~I~IwDl~t~~~i~--~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~--~~h~~~V~slaf---s  765 (784)
                       .+.|..+++.......  ...........+++.++|.++++...++.|..++.........  ...-..+++++|   +
T Consensus       183 ~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg~~~  262 (302)
T d2p4oa1         183 EKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTE  262 (302)
T ss_dssp             TTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCST
T ss_pred             CCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecCCCCCCceEEEEcCCC
Confidence             4488888876543211  1111233457799999999777777788999998765543322  234456899999   6


Q ss_pred             CCCCEEEEEECC
Q 047260          766 PVTGMVASASHD  777 (784)
Q Consensus       766 pdg~~LaSgs~D  777 (784)
                      +|++.|+.++..
T Consensus       263 ~D~~~Lyvtt~~  274 (302)
T d2p4oa1         263 GDCTAIYVVTNG  274 (302)
T ss_dssp             TTTTEEEEEECT
T ss_pred             CCCCEEEEECCC
Confidence            788888776554

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.83  E-value=2.8e-06  Score=86.53  Aligned_cols=228  Identities=12%  Similarity=0.141  Sum_probs=155.2

Q ss_pred             CeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeecc------CCCCCeEEEEEcCCCCcEEEEE-eCCCeEEEEeCC
Q 047260          551 VVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYT------GHSSPIMSLDFHPKKTDLFCFC-DNDNEIQYWSIN  623 (784)
Q Consensus       551 ~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~------~h~~~V~sl~~sp~~~~ll~sg-s~dg~I~iwDl~  623 (784)
                      ....|+++++++++++-..+..|++||.+. + .+..+.      +.......+++..+....+++. +.++.|.+++..
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~G-~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  101 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKEG-R-FKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY  101 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTTS-C-EEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCCC-C-EEEEecccCCCcccccccccccccccccccceeccCCcccccccccc
Confidence            467899999999888777788999999763 3 222221      1122345566666655444443 456678888876


Q ss_pred             CCeeEEeec---CCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEe--CCCCCEEEEEEcCCCCEEEEEeCC-eE
Q 047260          624 PFLCTHITK---GGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQ--GHAELVNYICWDTNGDYLASVSQN-LV  697 (784)
Q Consensus       624 ~~~~~~~~~---~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~--~h~~~V~sl~~spdg~~Lasgsdd-~I  697 (784)
                      .........   .....+++.+++..+++....+.+.+++.. ++.+..+.  .+......+++++++.++++.... .|
T Consensus       102 g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V  180 (279)
T d1q7fa_         102 GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCV  180 (279)
T ss_dssp             SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEE
T ss_pred             ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeeccccce
Confidence            443333222   345678899988877777777888888864 55666653  355678889999999887776654 99


Q ss_pred             EEEeCCCCceEEEecc--CCCceEEEEEecCCCEEEEEEC-CCeEEEEECCCCceE-Eec--ccCCceEEEEEeCCCCEE
Q 047260          698 KVWSMASGECIQELSS--NGNQFHSCVFHPSYSTLLVVGG-ISSLELWNMAENKSM-TIA--AHENIISALAQSPVTGMV  771 (784)
Q Consensus       698 ~IwDl~t~~~i~~l~~--~~~~I~sl~fspdg~~L~s~s~-dg~I~Iwdl~~~~~~-~~~--~h~~~V~slafspdg~~L  771 (784)
                      ++||. +++.+.++..  .......+++.++++.+++-.. ++.|.+|+.. ++.+ .+.  ........|++.++|.++
T Consensus       181 ~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~-G~~~~~~~~~~~~~~p~~vav~~dG~l~  258 (279)
T d1q7fa_         181 KVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISALESKVKHAQCFDVALMDDGSVV  258 (279)
T ss_dssp             EEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEEEEESSCCSCEEEEEEETTTEEE
T ss_pred             eeeec-CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCC-CCEEEEEeCCCCCCCEeEEEEeCCCcEE
Confidence            99996 4667777742  3445789999999986655443 3479999854 5544 332  233468899999998654


Q ss_pred             EEEECCCcEEEeC
Q 047260          772 ASASHDSSVKLWK  784 (784)
Q Consensus       772 aSgs~DG~V~IWd  784 (784)
                       +++.+++|++|+
T Consensus       259 -V~~~n~~v~~fr  270 (279)
T d1q7fa_         259 -LASKDYRLYIYR  270 (279)
T ss_dssp             -EEETTTEEEEEE
T ss_pred             -EEeCCCeEEEEE
Confidence             566899999985

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.74  E-value=3.5e-06  Score=87.58  Aligned_cols=231  Identities=13%  Similarity=0.078  Sum_probs=146.0

Q ss_pred             CCeEEEEEccCCCEEEEEeC-------CCeEEEEcCCCCcceeeecc---CCCCCeEEEEEcCCCCcEEEEEeCCCeEEE
Q 047260          550 SVVTDVRFRPNSSQLATASV-------DKSVRLWDAANPNFCSQAYT---GHSSPIMSLDFHPKKTDLFCFCDNDNEIQY  619 (784)
Q Consensus       550 ~~It~i~fspdg~~Latgs~-------Dg~I~IWdl~~~~~~~~~~~---~h~~~V~sl~~sp~~~~ll~sgs~dg~I~i  619 (784)
                      .....++|.++|+++++...       ++.|..||..++........   ........+.|.+++..+++ ++....|..
T Consensus        18 ~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~v-ad~~~~i~~   96 (314)
T d1pjxa_          18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFV-ADMRLGLLV   96 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEE-EETTTEEEE
T ss_pred             CCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEE-EECCCeEEE
Confidence            34567899999987776433       46788899887653222111   11234678999999874544 555667888


Q ss_pred             EeCCCCeeEEeec---C----CeeEEEEecCCCEEEEEEC---------------CCcEEEEECCCCeEEEEEeCCCCCE
Q 047260          620 WSINPFLCTHITK---G----GTAQVRFQPRIGQLLAAAS---------------DKVVSIFDIETDRQTHSLQGHAELV  677 (784)
Q Consensus       620 wDl~~~~~~~~~~---~----~v~~v~fsp~~~~Ll~~s~---------------Dg~I~IwDl~t~~~i~~l~~h~~~V  677 (784)
                      +|.+.........   +    ....+++.++|...++-..               .|.|..++.. ++..... ..-..-
T Consensus        97 ~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~-~~~~~p  174 (314)
T d1pjxa_          97 VQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-TAFQFP  174 (314)
T ss_dssp             EETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EEESSE
T ss_pred             EeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-CceeEee-CCccee
Confidence            8887654332211   1    2467899999877665322               2345545443 3332222 223345


Q ss_pred             EEEEEcCCCC----EEEEEe--CCeEEEEeCCCCceE------EEeccC-CCceEEEEEecCCCEEEEEECCCeEEEEEC
Q 047260          678 NYICWDTNGD----YLASVS--QNLVKVWSMASGECI------QELSSN-GNQFHSCVFHPSYSTLLVVGGISSLELWNM  744 (784)
Q Consensus       678 ~sl~~spdg~----~Lasgs--dd~I~IwDl~t~~~i------~~l~~~-~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl  744 (784)
                      +.++|++++.    +|+++.  .+.|..||+.....+      ..+... ......+++..+|+.+++....+.|.+||.
T Consensus       175 NGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp  254 (314)
T d1pjxa_         175 NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGP  254 (314)
T ss_dssp             EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred             eeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeC
Confidence            6789988765    455544  348888887643222      122221 223567999999998777778899999999


Q ss_pred             CCCceE-EecccCCceEEEEEeCCCC-EEEEEECCCcEEEe
Q 047260          745 AENKSM-TIAAHENIISALAQSPVTG-MVASASHDSSVKLW  783 (784)
Q Consensus       745 ~~~~~~-~~~~h~~~V~slafspdg~-~LaSgs~DG~V~IW  783 (784)
                      +.+... .+......+++++|.+|++ ++++.+.+|.|...
T Consensus       255 ~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~  295 (314)
T d1pjxa_         255 DGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKF  295 (314)
T ss_dssp             TCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             CCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEE
Confidence            887755 4555567789999999987 45555667877654

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.74  E-value=7e-06  Score=85.31  Aligned_cols=222  Identities=12%  Similarity=0.093  Sum_probs=143.2

Q ss_pred             CeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeC----CCeEEEEeCCCCe
Q 047260          551 VVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDN----DNEIQYWSINPFL  626 (784)
Q Consensus       551 ~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~----dg~I~iwDl~~~~  626 (784)
                      .+..++|.++|++.++-...+.|..|+.+... ....+.........+++++++. ++++...    .+.|...+.....
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~-~~~~~~~~~~~p~gla~~~dG~-l~va~~~~~~~~~~i~~~~~~~~~  118 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKE-IKRPFVSHKANPAAIKIHKDGR-LFVCYLGDFKSTGGIFAATENGDN  118 (319)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTCC-EEEEEECSSSSEEEEEECTTSC-EEEEECTTSSSCCEEEEECTTSCS
T ss_pred             CcEeCEECCCCCEEEEECCCCEEEEEECCCCe-EEEEEeCCCCCeeEEEECCCCC-EEEEecCCCccceeEEEEcCCCce
Confidence            44678999999977777788999999987755 3333444556788999999987 4444332    3345555655544


Q ss_pred             eEEeec-----CCeeEEEEecCCCEEEEEEC------CCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--
Q 047260          627 CTHITK-----GGTAQVRFQPRIGQLLAAAS------DKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVS--  693 (784)
Q Consensus       627 ~~~~~~-----~~v~~v~fsp~~~~Ll~~s~------Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgs--  693 (784)
                      ......     .....+++.++|+..++...      .+.+..++..... +..+...-...+.++|+|+++.|+.+.  
T Consensus       119 ~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~-~~~~~~~~~~pnGia~s~dg~~lyvad~~  197 (319)
T d2dg1a1         119 LQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT-VTPIIQNISVANGIALSTDEKVLWVTETT  197 (319)
T ss_dssp             CEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC-EEEEEEEESSEEEEEECTTSSEEEEEEGG
T ss_pred             eeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccce-eEEEeeccceeeeeeeccccceEEEeccc
Confidence            333222     34567899999875554322      1335555554333 222222334567899999999776665  


Q ss_pred             CCeEEEEeCCCC-ceEEE-------eccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE-Eec------ccCCc
Q 047260          694 QNLVKVWSMASG-ECIQE-------LSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM-TIA------AHENI  758 (784)
Q Consensus       694 dd~I~IwDl~t~-~~i~~-------l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~-~~~------~h~~~  758 (784)
                      .+.|..||+... .....       ..........+++..+|+..++....+.|.+||. +++.+ .+.      .+...
T Consensus       198 ~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~  276 (319)
T d2dg1a1         198 ANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLR  276 (319)
T ss_dssp             GTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCB
T ss_pred             CCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCce
Confidence            449999998642 21111       1111233567999999998888888899999996 45554 332      33456


Q ss_pred             eEEEEEeCCCCEEEEEEC
Q 047260          759 ISALAQSPVTGMVASASH  776 (784)
Q Consensus       759 V~slafspdg~~LaSgs~  776 (784)
                      +++++|.++...+++...
T Consensus       277 ~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         277 STHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             CCEEEECTTSCEEEEEEE
T ss_pred             eeeEEEeCCCCEEEEEcC
Confidence            889999998876666554

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.68  E-value=1e-06  Score=88.37  Aligned_cols=233  Identities=9%  Similarity=0.077  Sum_probs=135.6

Q ss_pred             EEcCC--CCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeC-C-----CeEEEEcCCCCccee
Q 047260          514 HFSSD--GKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASV-D-----KSVRLWDAANPNFCS  585 (784)
Q Consensus       514 ~fspd--g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~-D-----g~I~IWdl~~~~~~~  585 (784)
                      ..+||  |+.+|..+ +|.|.+.|+.+++.. .+..+.+.+...+|+|||+.||.... +     ..|.++++.++....
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~   82 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR   82 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence            46788  99887654 567999999987764 55667788999999999999987643 2     136677777655221


Q ss_pred             eecc-----CCCCCeEEEEEcCCCCcEEEEEeCC-----CeEEEEeCCCCeeEEeecCCeeEEEEecCCCEEEEEEC-CC
Q 047260          586 QAYT-----GHSSPIMSLDFHPKKTDLFCFCDND-----NEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAAS-DK  654 (784)
Q Consensus       586 ~~~~-----~h~~~V~sl~~sp~~~~ll~sgs~d-----g~I~iwDl~~~~~~~~~~~~v~~v~fsp~~~~Ll~~s~-Dg  654 (784)
                      .+..     ........+.|+|++..++++...+     ..+...+................+. .+++..++.... +.
T Consensus        83 lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  161 (281)
T d1k32a2          83 ITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHIL-FADGRRVIGRNTFEL  161 (281)
T ss_dssp             CCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEE-EETTEEEEEESCSCC
T ss_pred             eeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEecCCccceee-ecCCCeEEEeecccc
Confidence            1111     1223456788999998666654322     2355556665555444444444433 344444333322 11


Q ss_pred             -----------cEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC--eEEEEeCCCCceEEEeccCCCceEEE
Q 047260          655 -----------VVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN--LVKVWSMASGECIQELSSNGNQFHSC  721 (784)
Q Consensus       655 -----------~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd--~I~IwDl~t~~~i~~l~~~~~~I~sl  721 (784)
                                 ...+........... ...........++++..+.....++  .|.++|+.+++... +..+ ......
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~-lt~~-~~~~~~  238 (281)
T d1k32a2         162 PHWKGYRGGTRGKIWIEVNSGAFKKI-VDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRK-HTSF-TDYYPR  238 (281)
T ss_dssp             TTSTTCCSTTCCEEEEEEETTEEEEE-ECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEE-CCCC-CSSCEE
T ss_pred             ceeeeeccCCcceeeeeccccceeec-cCCccccceeeeeccccceecccccccceEEEeCCCCceEE-eecC-CCcccc
Confidence                       112222222222222 2233444555566553222222223  78899988776443 3322 222344


Q ss_pred             EEecCCCEEEEEECCCeEEEEECCCCceEEec
Q 047260          722 VFHPSYSTLLVVGGISSLELWNMAENKSMTIA  753 (784)
Q Consensus       722 ~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~~  753 (784)
                      .|+|||+.|+.. .++.|+++|+.+++...+.
T Consensus       239 ~~SpDG~~I~f~-~~~~l~~~d~~~g~~~~i~  269 (281)
T d1k32a2         239 HLNTDGRRILFS-KGGSIYIFNPDTEKIEKIE  269 (281)
T ss_dssp             EEEESSSCEEEE-ETTEEEEECTTTCCEEECC
T ss_pred             cCcCCCCEEEEE-eCCEEEEEECCCCCEEEec
Confidence            689999988764 4678999999998876543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=2.7e-06  Score=93.54  Aligned_cols=258  Identities=10%  Similarity=0.099  Sum_probs=150.8

Q ss_pred             ceEEEEEcCCCCEEEEEe---------CCCeEEEEECCCCceeeec--CCCCCCeEEEEEccCCCEEEEEeCCCeEEEEc
Q 047260          509 KVTCCHFSSDGKLLASSG---------HDRKVVLWNMDTLQTESTP--EDHKSVVTDVRFRPNSSQLATASVDKSVRLWD  577 (784)
Q Consensus       509 ~V~~l~fspdg~~Lasgs---------~Dg~I~IWd~~t~~~~~~l--~~h~~~It~i~fspdg~~Latgs~Dg~I~IWd  577 (784)
                      .+....||||+++|+...         ..+.+.|+|+.++......  ......+....|+|||+.||... ++.|.+.+
T Consensus        62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~  140 (465)
T d1xfda1          62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCA  140 (465)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEES
T ss_pred             ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEe
Confidence            466778999999988764         3577999999987754432  23345566789999999998876 57888888


Q ss_pred             CCCCcceeeeccCCCCCe-----------------EEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCCeeEEEE
Q 047260          578 AANPNFCSQAYTGHSSPI-----------------MSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRF  640 (784)
Q Consensus       578 l~~~~~~~~~~~~h~~~V-----------------~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v~~v~f  640 (784)
                      ..++.....+..+....|                 ..+.|+|||..+++.--++..|..+.+.....  .....+..+.+
T Consensus       141 ~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~--~~~p~~~~~~Y  218 (465)
T d1xfda1         141 HVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTG--SIYPTVKPYHY  218 (465)
T ss_dssp             SSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSS--SSSCCCEEEEC
T ss_pred             cCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccc--cccceeeeeec
Confidence            876553333332222222                 46789999998877766666666655432100  00011222222


Q ss_pred             ecCCCEEEEEECCCcEEEEECCCCeEEEEEe------CCCCCEEEEEEcCCCCEEEEEeC---C--eEEEEeCCCCceEE
Q 047260          641 QPRIGQLLAAASDKVVSIFDIETDRQTHSLQ------GHAELVNYICWDTNGDYLASVSQ---N--LVKVWSMASGECIQ  709 (784)
Q Consensus       641 sp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~------~h~~~V~sl~~spdg~~Lasgsd---d--~I~IwDl~t~~~i~  709 (784)
                      -.-|...    ....+.++|+..+.......      .....+..+.|++++++++...+   +  .|.++|..++++..
T Consensus       219 p~~G~~n----p~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~  294 (465)
T d1xfda1         219 PKAGSEN----PSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTK  294 (465)
T ss_dssp             CBTTSCC----CEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEE
T ss_pred             cccCCCC----CceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEE
Confidence            2111110    01257778887664332221      12234788999999987776542   2  78899999998765


Q ss_pred             EeccC-CCce----EEEEEecCCCEEEE--EE-CCC--eEEEEECC-------CCceEEecccCCceEEE-EEeCCCCEE
Q 047260          710 ELSSN-GNQF----HSCVFHPSYSTLLV--VG-GIS--SLELWNMA-------ENKSMTIAAHENIISAL-AQSPVTGMV  771 (784)
Q Consensus       710 ~l~~~-~~~I----~sl~fspdg~~L~s--~s-~dg--~I~Iwdl~-------~~~~~~~~~h~~~V~sl-afspdg~~L  771 (784)
                      .+... ...|    ....|+++|+.++.  .+ .+|  .++..++.       ......+....-.|..+ .|+.+++.|
T Consensus       295 ~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~v  374 (465)
T d1xfda1         295 KHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKI  374 (465)
T ss_dssp             EEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEE
T ss_pred             EEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEE
Confidence            55422 2222    34579999985433  22 233  44444322       12222334444455554 577777655


Q ss_pred             EE
Q 047260          772 AS  773 (784)
Q Consensus       772 aS  773 (784)
                      +.
T Consensus       375 yF  376 (465)
T d1xfda1         375 YF  376 (465)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.59  E-value=5.7e-05  Score=77.36  Aligned_cols=220  Identities=14%  Similarity=0.071  Sum_probs=147.3

Q ss_pred             EEEEEcCC-CCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeecc
Q 047260          511 TCCHFSSD-GKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYT  589 (784)
Q Consensus       511 ~~l~fspd-g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~  589 (784)
                      -+..|++. +.++.+--..+.|..||.++++... + .....+.++++.+++.++++ +.+ .|.++|..+++.......
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~-~-~~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~   96 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKTV-H-ALPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAEL   96 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-E-ECSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECS
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEEE-E-ECCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeee
Confidence            45668874 4455554467889999999876542 2 23567889999999876665 454 588999988763222111


Q ss_pred             C---CCCCeEEEEEcCCCCcEEEEEeC---CCeEEEEeCCCCeeEEeec--CCeeEEEEecCCCEEEEEEC-CCcEEEEE
Q 047260          590 G---HSSPIMSLDFHPKKTDLFCFCDN---DNEIQYWSINPFLCTHITK--GGTAQVRFQPRIGQLLAAAS-DKVVSIFD  660 (784)
Q Consensus       590 ~---h~~~V~sl~~sp~~~~ll~sgs~---dg~I~iwDl~~~~~~~~~~--~~v~~v~fsp~~~~Ll~~s~-Dg~I~IwD  660 (784)
                      .   ....+..+.+.|+|...+.+...   .+.-.+|.+...+......  .....++|+++++.++.+.. .+.|..|+
T Consensus        97 ~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~  176 (295)
T d2ghsa1          97 ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVP  176 (295)
T ss_dssp             STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEE
T ss_pred             ecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEEeecccceeeEee
Confidence            1   12357889999999744443322   2334555555544333332  45577899999998877766 68899998


Q ss_pred             CCCC------e--EEEEEeCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEeCCCCceEEEeccCCCceEEEEEe-cCCCEE
Q 047260          661 IETD------R--QTHSLQGHAELVNYICWDTNGDYLASVSQN-LVKVWSMASGECIQELSSNGNQFHSCVFH-PSYSTL  730 (784)
Q Consensus       661 l~t~------~--~i~~l~~h~~~V~sl~~spdg~~Lasgsdd-~I~IwDl~t~~~i~~l~~~~~~I~sl~fs-pdg~~L  730 (784)
                      +...      +  ....+.+.......++++.+|.+.++.-.+ .|..||. +++.+..+......+++|+|- ++.+.|
T Consensus       177 ~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d~~~L  255 (295)
T d2ghsa1         177 LDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRL  255 (295)
T ss_dssp             BCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEE
T ss_pred             ecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEeCCCCCEE
Confidence            7431      1  122233345567889999999988776544 8999994 688899988777789999996 676766


Q ss_pred             EEEEC
Q 047260          731 LVVGG  735 (784)
Q Consensus       731 ~s~s~  735 (784)
                      ++.+.
T Consensus       256 yvTta  260 (295)
T d2ghsa1         256 LVTSA  260 (295)
T ss_dssp             EEEEB
T ss_pred             EEEEC
Confidence            66543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.37  E-value=0.0002  Score=73.05  Aligned_cols=216  Identities=10%  Similarity=0.085  Sum_probs=140.8

Q ss_pred             EEEEEccCCCEE-EEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEee
Q 047260          553 TDVRFRPNSSQL-ATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHIT  631 (784)
Q Consensus       553 t~i~fspdg~~L-atgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~  631 (784)
                      ....|++....| ++=-..+.|..||.+++......   ....+.++++.+++. ++++ +. ..|.++|..+.+.....
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~~---~~~~~~~i~~~~dg~-l~va-~~-~gl~~~d~~tg~~~~l~   94 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKTVHA---LPFMGSALAKISDSK-QLIA-SD-DGLFLRDTATGVLTLHA   94 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEE---CSSCEEEEEEEETTE-EEEE-ET-TEEEEEETTTCCEEEEE
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEEEEE---CCCCcEEEEEecCCC-EEEE-Ee-CccEEeecccceeeEEe
Confidence            346687744444 44446788999998886533222   345688999988875 4444 33 46889999877655433


Q ss_pred             c-------CCeeEEEEecCCCEEEEEEC----CCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeC--CeEE
Q 047260          632 K-------GGTAQVRFQPRIGQLLAAAS----DKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQ--NLVK  698 (784)
Q Consensus       632 ~-------~~v~~v~fsp~~~~Ll~~s~----Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsd--d~I~  698 (784)
                      .       .....+.+.++|+..++...    .+.-.+|.+..++....+. .-..-+.++|+++++.++.+..  +.|.
T Consensus        95 ~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~-~~~~~Ng~~~s~d~~~l~~~dt~~~~I~  173 (295)
T d2ghsa1          95 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFA-DISIPNSICFSPDGTTGYFVDTKVNRLM  173 (295)
T ss_dssp             CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEE-EESSEEEEEECTTSCEEEEEETTTCEEE
T ss_pred             eeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEee-ccCCcceeeecCCCceEEEeecccceee
Confidence            2       23577889999886665443    2345667776676554443 3345678999999997766653  3888


Q ss_pred             EEeCCCC------c--eEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE-EecccCCceEEEEEe-CCC
Q 047260          699 VWSMASG------E--CIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQS-PVT  768 (784)
Q Consensus       699 IwDl~t~------~--~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slafs-pdg  768 (784)
                      .|++...      +  ....+.........+++..+|.+.++.-..+.|..||.. ++.+ .+.-....+++++|- +|.
T Consensus       174 ~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~-G~~~~~i~lP~~~~T~~~FGG~d~  252 (295)
T d2ghsa1         174 RVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GNHIARYEVPGKQTTCPAFIGPDA  252 (295)
T ss_dssp             EEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-CCEEEEEECSCSBEEEEEEESTTS
T ss_pred             EeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCC-CcEeeEecCCCCceEEEEEeCCCC
Confidence            8887431      1  122233445567889999999877777778899999965 5544 444444679999997 565


Q ss_pred             CEE-EEEEC
Q 047260          769 GMV-ASASH  776 (784)
Q Consensus       769 ~~L-aSgs~  776 (784)
                      +.| +|...
T Consensus       253 ~~LyvTta~  261 (295)
T d2ghsa1         253 SRLLVTSAR  261 (295)
T ss_dssp             CEEEEEEBC
T ss_pred             CEEEEEECC
Confidence            544 44433

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=1.7e-05  Score=86.85  Aligned_cols=246  Identities=14%  Similarity=0.073  Sum_probs=148.5

Q ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCceeeecCC---CCCCeEEEEEccCCCEEEEEe---------CCCeEEEEcCCCC
Q 047260          514 HFSSDGKLLASSGHDRKVVLWNMDTLQTESTPED---HKSVVTDVRFRPNSSQLATAS---------VDKSVRLWDAANP  581 (784)
Q Consensus       514 ~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~---h~~~It~i~fspdg~~Latgs---------~Dg~I~IWdl~~~  581 (784)
                      .|.+++.++.. ..+|.|.+||+.+++....+..   ....+....|+||+++|+...         ..+.+.|+|+.++
T Consensus        23 ~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~  101 (465)
T d1xfda1          23 KWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG  101 (465)
T ss_dssp             CBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC
T ss_pred             EEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCC
Confidence            47778776653 5678899999988765444432   234677889999999988764         3578899999886


Q ss_pred             cce-eeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecC---------------------CeeEEE
Q 047260          582 NFC-SQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKG---------------------GTAQVR  639 (784)
Q Consensus       582 ~~~-~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~---------------------~v~~v~  639 (784)
                      ... +.........+....|+|+|..++++.  ++.|.+.+......+.....                     .-..+.
T Consensus       102 ~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~--~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~  179 (465)
T d1xfda1         102 DPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF--ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHW  179 (465)
T ss_dssp             CCEECCCTTCCSCCCSBCCBCSSTTCEEEEE--TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEE
T ss_pred             ceeeccCccCCccccceeeeccCCceEEEEe--cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEE
Confidence            632 111223344566789999999877665  67788888876544433321                     124567


Q ss_pred             EecCCCEEEEEEC-CCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEEEec------
Q 047260          640 FQPRIGQLLAAAS-DKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELS------  712 (784)
Q Consensus       640 fsp~~~~Ll~~s~-Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~~l~------  712 (784)
                      |+|+|++|+.... +..|..+.+....     ......+..+.+..-|.-..   .-.+.|+|+.++.......      
T Consensus       180 WSPDgk~iaf~~~D~s~V~~~~~~~~~-----~~~~p~~~~~~Yp~~G~~np---~~~l~v~d~~~~~~~~~~~~~~~~~  251 (465)
T d1xfda1         180 WSPDGTRLAYAAINDSRVPIMELPTYT-----GSIYPTVKPYHYPKAGSENP---SISLHVIGLNGPTHDLEMMPPDDPR  251 (465)
T ss_dssp             ECTTSSEEEEEEEECTTSCEEEECCCS-----SSSSCCCEEEECCBTTSCCC---EEEEEEEESSSSCCCEECCCCCCGG
T ss_pred             ECCCCCeEEEEEecccccceeeccccc-----ccccceeeeeeccccCCCCC---ceeEEEEecCCCcEEEEEeccCcCc
Confidence            9999999988764 3445444432100     00111223333321111100   0157888887764432221      


Q ss_pred             cCCCceEEEEEecCCCEEEEEEC-C---CeEEEEECCCCceEEec--ccCCce----EEEEEeCCCCE
Q 047260          713 SNGNQFHSCVFHPSYSTLLVVGG-I---SSLELWNMAENKSMTIA--AHENII----SALAQSPVTGM  770 (784)
Q Consensus       713 ~~~~~I~sl~fspdg~~L~s~s~-d---g~I~Iwdl~~~~~~~~~--~h~~~V----~slafspdg~~  770 (784)
                      .....+..+.|.++++.++.... +   ..|.++|..++++..+.  ...+.|    ....|++||+.
T Consensus       252 ~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~  319 (465)
T d1xfda1         252 MREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRK  319 (465)
T ss_dssp             GSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCS
T ss_pred             cccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCe
Confidence            12234678899999876555443 2   26888999999876433  222222    34578888874

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.18  E-value=7.3e-05  Score=74.14  Aligned_cols=218  Identities=7%  Similarity=0.018  Sum_probs=127.8

Q ss_pred             EEccC--CCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCC-----eEEEEeCCCCeeE
Q 047260          556 RFRPN--SSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDN-----EIQYWSINPFLCT  628 (784)
Q Consensus       556 ~fspd--g~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg-----~I~iwDl~~~~~~  628 (784)
                      ..+|+  |+.++..+ ++.|.+.|+.+++  ...+..+.+.+...+|+|||..++++...++     .|.+++...+...
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~--~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~   81 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGS--TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIK   81 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCC--EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCC--EEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceE
Confidence            45788  99888775 4678888998766  3345566778899999999998887765443     4777888777665


Q ss_pred             EeecC---------CeeEEEEecCCCEEEEEECC------CcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe
Q 047260          629 HITKG---------GTAQVRFQPRIGQLLAAASD------KVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVS  693 (784)
Q Consensus       629 ~~~~~---------~v~~v~fsp~~~~Ll~~s~D------g~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgs  693 (784)
                      .....         ......|+|+++.|+.....      ..+...+...+.....   +......+.+.+++.+++...
T Consensus        82 ~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  158 (281)
T d1k32a2          82 RITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPL---NLGPATHILFADGRRVIGRNT  158 (281)
T ss_dssp             ECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEEC---CSCSCSEEEEETTEEEEEESC
T ss_pred             EeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEe---cCCccceeeecCCCeEEEeec
Confidence            54322         23567899999988876442      2355566655544322   222223333333333443322


Q ss_pred             CC------------eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEE-CC--CeEEEEECCCCceEEecccCCc
Q 047260          694 QN------------LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVG-GI--SSLELWNMAENKSMTIAAHENI  758 (784)
Q Consensus       694 dd------------~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s-~d--g~I~Iwdl~~~~~~~~~~h~~~  758 (784)
                      ..            ...++........ .............+.++  .++... .+  ..|.++|+.+++...+..+.. 
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~d~~g~~~~~lt~~~~-  234 (281)
T d1k32a2         159 FELPHWKGYRGGTRGKIWIEVNSGAFK-KIVDMSTHVSSPVIVGH--RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTD-  234 (281)
T ss_dssp             SCCTTSTTCCSTTCCEEEEEEETTEEE-EEECCSSCCEEEEEETT--EEEEEECTTSSCEEEEEETTSCSCEECCCCCS-
T ss_pred             cccceeeeeccCCcceeeeecccccee-eccCCccccceeeeecc--ccceecccccccceEEEeCCCCceEEeecCCC-
Confidence            11            1122222222222 22223344455566655  344433 33  368888998887765554432 


Q ss_pred             eEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          759 ISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       759 V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      .....|+|||+.|+.. .++.|+++|
T Consensus       235 ~~~~~~SpDG~~I~f~-~~~~l~~~d  259 (281)
T d1k32a2         235 YYPRHLNTDGRRILFS-KGGSIYIFN  259 (281)
T ss_dssp             SCEEEEEESSSCEEEE-ETTEEEEEC
T ss_pred             cccccCcCCCCEEEEE-eCCEEEEEE
Confidence            2234689999987764 467787765

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.08  E-value=0.0021  Score=64.16  Aligned_cols=242  Identities=10%  Similarity=0.002  Sum_probs=152.6

Q ss_pred             CEEEEEeCCCeEEEEECCCCcee-----eecCCCCCCeEEEEEccCCCEEEEE-eCCCeEEEEcCCCCcceeeeccCCCC
Q 047260          520 KLLASSGHDRKVVLWNMDTLQTE-----STPEDHKSVVTDVRFRPNSSQLATA-SVDKSVRLWDAANPNFCSQAYTGHSS  593 (784)
Q Consensus       520 ~~Lasgs~Dg~I~IWd~~t~~~~-----~~l~~h~~~It~i~fspdg~~Latg-s~Dg~I~IWdl~~~~~~~~~~~~h~~  593 (784)
                      .+|+.+. .+.|+-.+++.....     ..+..+...|..|+|....+.|+-+ ..++.|+..+++... ..........
T Consensus         2 ~fLl~s~-~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~-~~~v~~~~~~   79 (263)
T d1npea_           2 THLLFAQ-TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE-PTTIIRQDLG   79 (263)
T ss_dssp             EEEEEEE-EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC-CEEEECTTCC
T ss_pred             CEEEEeC-CCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCC-cEEEEEeccc
Confidence            3444433 346777777543211     1223344567889999877666655 456788888887654 2333333335


Q ss_pred             CeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEEEECC-C--cEEEEECCCCeEE
Q 047260          594 PIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLAAASD-K--VVSIFDIETDRQT  667 (784)
Q Consensus       594 ~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~~s~D-g--~I~IwDl~t~~~i  667 (784)
                      .+.+|++...+..++++-...+.|.+.+++...+.....   .....++++|..++++..... +  .|...++......
T Consensus        80 ~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~  159 (263)
T d1npea_          80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR  159 (263)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE
T ss_pred             cccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCce
Confidence            688999987777777777778899999998654433322   457889999999988877653 2  3555566544333


Q ss_pred             EEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEE-CCCeEEEEEC
Q 047260          668 HSLQGHAELVNYICWDTNGDYLASVS--QNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVG-GISSLELWNM  744 (784)
Q Consensus       668 ~~l~~h~~~V~sl~~spdg~~Lasgs--dd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s-~dg~I~Iwdl  744 (784)
                      ......-.....+++++.+..|..+.  .+.|...|+........+.+.. ....+++.  +.+|+... ..+.|...|.
T Consensus       160 ~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~-~P~~lav~--~~~lYwtd~~~~~I~~~~~  236 (263)
T d1npea_         160 ILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQ-YPFAVTSY--GKNLYYTDWKTNSVIAMDL  236 (263)
T ss_dssp             EEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCC-SEEEEEEE--TTEEEEEETTTTEEEEEET
T ss_pred             eeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCC-CcEEEEEE--CCEEEEEECCCCEEEEEEC
Confidence            33333445678999998888776665  3489999987655443444333 34577775  44666665 4578999999


Q ss_pred             CCCceEEec--ccCCceEEEEEeC
Q 047260          745 AENKSMTIA--AHENIISALAQSP  766 (784)
Q Consensus       745 ~~~~~~~~~--~h~~~V~slafsp  766 (784)
                      .+++.....  ........|++.+
T Consensus       237 ~~g~~~~~~~~~~~~~~~gi~v~~  260 (263)
T d1npea_         237 AISKEMDTFHPHKQTRLYGITIAL  260 (263)
T ss_dssp             TTTEEEEEECCSSCCCCCCEEEEC
T ss_pred             CCCccceEECCCCCCCcceEEEeC
Confidence            888776433  2233444555544

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.94  E-value=0.0011  Score=69.13  Aligned_cols=267  Identities=12%  Similarity=0.090  Sum_probs=146.3

Q ss_pred             ceEEEEEcCCCCEEEEEeCCC-----------eEEEEECCCCceeee---cCCCCCCeEEEEEccCCCEEEEEeCC-CeE
Q 047260          509 KVTCCHFSSDGKLLASSGHDR-----------KVVLWNMDTLQTEST---PEDHKSVVTDVRFRPNSSQLATASVD-KSV  573 (784)
Q Consensus       509 ~V~~l~fspdg~~Lasgs~Dg-----------~I~IWd~~t~~~~~~---l~~h~~~It~i~fspdg~~Latgs~D-g~I  573 (784)
                      .+...+...+|++++.|+.+.           .+.+||..+++-...   ...|.......++.+++++++.|+.+ ..+
T Consensus        21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~  100 (387)
T d1k3ia3          21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT  100 (387)
T ss_dssp             CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred             ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcce
Confidence            344455566889888888531           378999987653321   12344445567888999999988765 589


Q ss_pred             EEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCC------CeEEEEeCCCCeeEEeecC--------------
Q 047260          574 RLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDND------NEIQYWSINPFLCTHITKG--------------  633 (784)
Q Consensus       574 ~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~d------g~I~iwDl~~~~~~~~~~~--------------  633 (784)
                      .+||..+..............-.+.+..+++. +++.++.+      ..+.+||..+..-......              
T Consensus       101 ~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~-v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~  179 (387)
T d1k3ia3         101 SLYDSSSDSWIPGPDMQVARGYQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLY  179 (387)
T ss_dssp             EEEEGGGTEEEECCCCSSCCSSCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGG
T ss_pred             eEecCccCcccccccccccccccceeeecCCc-eeeeccccccccccceeeeecCCCCceeecCCCccccccccccccee
Confidence            99999876532211111112233556667776 55555432      3689999987654332110              


Q ss_pred             ---CeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEe--C----CCC--CEEEEEE-cCCCCEEEEEeC-------
Q 047260          634 ---GTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQ--G----HAE--LVNYICW-DTNGDYLASVSQ-------  694 (784)
Q Consensus       634 ---~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~--~----h~~--~V~sl~~-spdg~~Lasgsd-------  694 (784)
                         ....+...+++..++.+..++.+.++|..+........  .    +..  .-.++.+ ..++++++.++.       
T Consensus       180 ~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~  259 (387)
T d1k3ia3         180 RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSD  259 (387)
T ss_dssp             TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSB
T ss_pred             eccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCc
Confidence               01112234455666666666777777877664332211  0    111  1122222 345666666641       


Q ss_pred             --CeEEEEeCCCC---ceEEEec---cCCCceEEEEEecCCCEEEEEECC-----------CeEEEEECCCCceEEeccc
Q 047260          695 --NLVKVWSMASG---ECIQELS---SNGNQFHSCVFHPSYSTLLVVGGI-----------SSLELWNMAENKSMTIAAH  755 (784)
Q Consensus       695 --d~I~IwDl~t~---~~i~~l~---~~~~~I~sl~fspdg~~L~s~s~d-----------g~I~Iwdl~~~~~~~~~~h  755 (784)
                        ....+.++...   .......   .....-.+.+..++++.+++++.+           .++.+||..+.+-..+...
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~  339 (387)
T d1k3ia3         260 ATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPN  339 (387)
T ss_dssp             CCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCC
T ss_pred             ccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEECCCC
Confidence              12334443321   1111111   112223456667899988888753           1578999888765433211


Q ss_pred             C--Cc-eEEEEEeCCCCEEEEEEC
Q 047260          756 E--NI-ISALAQSPVTGMVASASH  776 (784)
Q Consensus       756 ~--~~-V~slafspdg~~LaSgs~  776 (784)
                      .  .. -....+.+||++|+.|+.
T Consensus       340 ~~~R~~Hs~a~l~~dG~v~v~GG~  363 (387)
T d1k3ia3         340 SIVRVYHSISLLLPDGRVFNGGGG  363 (387)
T ss_dssp             SSCCCTTEEEEECTTSCEEEEECC
T ss_pred             CCcccceEEEEECCCCEEEEEeCC
Confidence            1  11 122345789999999884

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=0.014  Score=57.91  Aligned_cols=226  Identities=8%  Similarity=-0.032  Sum_probs=144.8

Q ss_pred             EEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEe-CCCeEEEEcCCCCc---ceeeeccCCCCCeE
Q 047260          521 LLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATAS-VDKSVRLWDAANPN---FCSQAYTGHSSPIM  596 (784)
Q Consensus       521 ~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs-~Dg~I~IWdl~~~~---~~~~~~~~h~~~V~  596 (784)
                      +|+.+.. ..|+..++++......+ .....+..|.|++..+.|+-.. .++.|...+++...   ............+.
T Consensus         3 fLl~s~~-~~I~~~~l~~~~~~~~~-~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~   80 (266)
T d1ijqa1           3 YLFFTNR-HEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD   80 (266)
T ss_dssp             EEEEECB-SSEEEEETTSCCCEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred             EEEEECC-CeEEEEECCCCcceeee-CCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcc
Confidence            3444433 34888898865544444 3455678999998777776654 45667766665321   11222223335577


Q ss_pred             EEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEEEEC--CCcEEEEECCCCeEEEEEe
Q 047260          597 SLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLAAAS--DKVVSIFDIETDRQTHSLQ  671 (784)
Q Consensus       597 sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~~s~--Dg~I~IwDl~t~~~i~~l~  671 (784)
                      .+++.+.+..++++....+.|.+.+++.........   .....++++|..++++....  .+.|.-.++..........
T Consensus        81 glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~  160 (266)
T d1ijqa1          81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT  160 (266)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred             eEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccc
Confidence            888888888788888888999999998765443333   45778999998888887764  3567777776544433333


Q ss_pred             CCCCCEEEEEEcCCCCEEEEEeC--CeEEEEeCCCCceEEEecc--CCCceEEEEEecCCCEEEEEE-CCCeEEEEECCC
Q 047260          672 GHAELVNYICWDTNGDYLASVSQ--NLVKVWSMASGECIQELSS--NGNQFHSCVFHPSYSTLLVVG-GISSLELWNMAE  746 (784)
Q Consensus       672 ~h~~~V~sl~~spdg~~Lasgsd--d~I~IwDl~t~~~i~~l~~--~~~~I~sl~fspdg~~L~s~s-~dg~I~Iwdl~~  746 (784)
                      ..-.....+++++.+..|+.+..  +.|...|+........+..  .......+++..  .+|+.+. .++.|+..+..+
T Consensus       161 ~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~--~~ly~td~~~~~I~~~~~~~  238 (266)
T d1ijqa1         161 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE--DKVFWTDIINEAIFSANRLT  238 (266)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET--TEEEEEETTTTEEEEEETTT
T ss_pred             cccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEEC--CEEEEEECCCCeEEEEECCC
Confidence            34466789999998887776653  3899999866543333322  223456677663  4566654 557888888777


Q ss_pred             CceE
Q 047260          747 NKSM  750 (784)
Q Consensus       747 ~~~~  750 (784)
                      +...
T Consensus       239 g~~~  242 (266)
T d1ijqa1         239 GSDV  242 (266)
T ss_dssp             CCCC
T ss_pred             Ccce
Confidence            6544

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.91  E-value=0.0066  Score=60.33  Aligned_cols=216  Identities=8%  Similarity=0.017  Sum_probs=141.2

Q ss_pred             CCCceEEEEEcCCCCEEEEE-eCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEE-eCCCeEEEEcCCCCcc
Q 047260          506 RNSKVTCCHFSSDGKLLASS-GHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATA-SVDKSVRLWDAANPNF  583 (784)
Q Consensus       506 H~~~V~~l~fspdg~~Lasg-s~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latg-s~Dg~I~IWdl~~~~~  583 (784)
                      +...|..++|.+..+.|+.+ ..++.|+..+++.......+......+.+|++..-+..|+.+ ...+.|.+.+++... 
T Consensus        34 ~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~-  112 (263)
T d1npea_          34 PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ-  112 (263)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-
T ss_pred             CCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCce-
Confidence            44458889999877766655 456789999988665555554444678899998756666544 456799999988654 


Q ss_pred             eeeeccCCCCCeEEEEEcCCCCcEEEEEeCCC--eEEEEeCCCCeeEEeec---CCeeEEEEecCCCEEEEEEC-CCcEE
Q 047260          584 CSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDN--EIQYWSINPFLCTHITK---GGTAQVRFQPRIGQLLAAAS-DKVVS  657 (784)
Q Consensus       584 ~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg--~I~iwDl~~~~~~~~~~---~~v~~v~fsp~~~~Ll~~s~-Dg~I~  657 (784)
                      ...........+..++++|....++.+-...+  .|..-+++.........   .....+++.+.++.|+.+.. .+.|.
T Consensus       113 ~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~  192 (263)
T d1npea_         113 RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAE  192 (263)
T ss_dssp             CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             EEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEE
Confidence            22233333467899999999887776654333  35555666443333322   34578999998888887765 68899


Q ss_pred             EEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEeCCCCceEEEecc-CCCceEEEEEec
Q 047260          658 IFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVS--QNLVKVWSMASGECIQELSS-NGNQFHSCVFHP  725 (784)
Q Consensus       658 IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgs--dd~I~IwDl~t~~~i~~l~~-~~~~I~sl~fsp  725 (784)
                      ..|+........+.+.. ....|++.  +..|+...  .+.|...|..+++.+..+.. .......+++.+
T Consensus       193 ~~~~~g~~~~~v~~~~~-~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~~~~~gi~v~~  260 (263)
T d1npea_         193 CLNPAQPGRRKVLEGLQ-YPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIAL  260 (263)
T ss_dssp             EEETTEEEEEEEEECCC-SEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEEC
T ss_pred             EEECCCCCeEEEECCCC-CcEEEEEE--CCEEEEEECCCCEEEEEECCCCccceEECCCCCCCcceEEEeC
Confidence            99997655444444433 34577775  34454443  34899999998888776642 233444555443

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=0.0099  Score=59.07  Aligned_cols=214  Identities=10%  Similarity=0.014  Sum_probs=137.4

Q ss_pred             EEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCe----eEEee---cCCe
Q 047260          563 QLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFL----CTHIT---KGGT  635 (784)
Q Consensus       563 ~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~----~~~~~---~~~v  635 (784)
                      +|+.+.. ..|+..++++... ... ......+..|+|++....++.+-...+.|...+++...    .....   ...+
T Consensus         3 fLl~s~~-~~I~~~~l~~~~~-~~~-~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p   79 (266)
T d1ijqa1           3 YLFFTNR-HEVRKMTLDRSEY-TSL-IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP   79 (266)
T ss_dssp             EEEEECB-SSEEEEETTSCCC-EEE-ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred             EEEEECC-CeEEEEECCCCcc-eee-eCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCc
Confidence            3444443 3588889887552 222 23455678999999888777776677888877775321    11111   1456


Q ss_pred             eEEEEecCCCEEEEEEC-CCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC---eEEEEeCCCCceEEEe
Q 047260          636 AQVRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN---LVKVWSMASGECIQEL  711 (784)
Q Consensus       636 ~~v~fsp~~~~Ll~~s~-Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd---~I~IwDl~t~~~i~~l  711 (784)
                      ..+++.+.++.|+.+.. .+.|.++++........+.........++++|...+|+....+   .|...++........+
T Consensus        80 ~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~  159 (266)
T d1ijqa1          80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV  159 (266)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE
T ss_pred             ceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceeccc
Confidence            78999988888888766 5789999998776655566566778999999976666555422   6766776544443333


Q ss_pred             ccCCCceEEEEEecCCCEEEEEEC-CCeEEEEECCCCceEEec---ccCCceEEEEEeCCCCEEEEEE-CCCcEE
Q 047260          712 SSNGNQFHSCVFHPSYSTLLVVGG-ISSLELWNMAENKSMTIA---AHENIISALAQSPVTGMVASAS-HDSSVK  781 (784)
Q Consensus       712 ~~~~~~I~sl~fspdg~~L~s~s~-dg~I~Iwdl~~~~~~~~~---~h~~~V~slafspdg~~LaSgs-~DG~V~  781 (784)
                      ...-.....+++.+.+..|+.+.. .+.|...++.......+.   .......+|++.  +..|+.+. .++.|.
T Consensus       160 ~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~  232 (266)
T d1ijqa1         160 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIF  232 (266)
T ss_dssp             CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEE
T ss_pred             ccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEE
Confidence            334456789999998888887754 578999999776544322   222345677776  33444443 455554

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.85  E-value=0.00087  Score=70.66  Aligned_cols=224  Identities=10%  Similarity=0.008  Sum_probs=135.3

Q ss_pred             EEEEeCCCeEEEEECCCCceeeecCCC---------------------------------------CCCe--EEEEEcc-
Q 047260          522 LASSGHDRKVVLWNMDTLQTESTPEDH---------------------------------------KSVV--TDVRFRP-  559 (784)
Q Consensus       522 Lasgs~Dg~I~IWd~~t~~~~~~l~~h---------------------------------------~~~I--t~i~fsp-  559 (784)
                      |.+|+..|.|+|+-+.+.+.+..+...                                       .+..  -.+++.. 
T Consensus        16 f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~TdG   95 (459)
T d1fwxa2          16 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   95 (459)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEETT
T ss_pred             EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccCC
Confidence            567788888888888777666544210                                       0111  1344443 


Q ss_pred             --CCCEEEEEe-CCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCc-EEEEEeCC------------------CeE
Q 047260          560 --NSSQLATAS-VDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTD-LFCFCDND------------------NEI  617 (784)
Q Consensus       560 --dg~~Latgs-~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~-ll~sgs~d------------------g~I  617 (784)
                        ||++|++.. .+..|.+.|+++.+............+..+...++.+. +++..+.+                  +.+
T Consensus        96 tyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~  175 (459)
T d1fwxa2          96 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF  175 (459)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEE
T ss_pred             ccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEE
Confidence              688887776 57889999999876322222234455666666544332 33333321                  346


Q ss_pred             EEEeCCCCeeEEeec--CCeeEEEEecCCCEEEEEECC--------------------------------------CcEE
Q 047260          618 QYWSINPFLCTHITK--GGTAQVRFQPRIGQLLAAASD--------------------------------------KVVS  657 (784)
Q Consensus       618 ~iwDl~~~~~~~~~~--~~v~~v~fsp~~~~Ll~~s~D--------------------------------------g~I~  657 (784)
                      .++|..+.+......  +....+.++++|+++++.+.+                                      +.+.
T Consensus       176 t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~  255 (459)
T d1fwxa2         176 TAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK  255 (459)
T ss_dssp             EEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred             EEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCce
Confidence            778888877665443  556688999999999998753                                      1233


Q ss_pred             EEECCCC---eEEEEEeCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEeCCCC-----------ceEEEeccCCCceEEE
Q 047260          658 IFDIETD---RQTHSLQGHAELVNYICWDTNGDYLASVS--QNLVKVWSMASG-----------ECIQELSSNGNQFHSC  721 (784)
Q Consensus       658 IwDl~t~---~~i~~l~~h~~~V~sl~~spdg~~Lasgs--dd~I~IwDl~t~-----------~~i~~l~~~~~~I~sl  721 (784)
                      +.|.+..   ..++.+... .....+.++|||+++++++  +.+|.|+|++.-           .++..-...+-.-...
T Consensus       256 VVD~~~~~~~~v~~yIPVp-KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht  334 (459)
T d1fwxa2         256 VVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHT  334 (459)
T ss_dssp             EEECSGG--CSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEE
T ss_pred             eecccccCCcceeEEEecC-CCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCcccc
Confidence            3343321   122222211 1234578999999999988  449999999642           1121111223334667


Q ss_pred             EEecCCCEEEEEECCCeEEEEECCC
Q 047260          722 VFHPSYSTLLVVGGISSLELWNMAE  746 (784)
Q Consensus       722 ~fspdg~~L~s~s~dg~I~Iwdl~~  746 (784)
                      +|...|....+.--|..|.-|++..
T Consensus       335 ~fd~~g~aytslfids~v~kw~~~~  359 (459)
T d1fwxa2         335 AFDGRGNAYTSLFLDSQVVKWNIED  359 (459)
T ss_dssp             EECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             ccCCCceEEEEeeccceEEEEecch
Confidence            8888886555556789999999853

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.77  E-value=0.013  Score=58.60  Aligned_cols=243  Identities=11%  Similarity=0.169  Sum_probs=152.5

Q ss_pred             CCeEEEEECCCCce-eeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCc
Q 047260          528 DRKVVLWNMDTLQT-ESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTD  606 (784)
Q Consensus       528 Dg~I~IWd~~t~~~-~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~  606 (784)
                      ...|.|.|+.+... .+..-.    .-+.-.+|..+.||.-+ ..++.|+|+++... .+.+.- ..+|.-=.|-.+.. 
T Consensus        44 ~~~VvIidl~n~~~~~Rrpi~----AdsAIMhP~~~IiALra-g~~LQiFnletK~k-lks~~~-~e~VvfWkWis~~~-  115 (327)
T d1utca2          44 QAQVVIIDMNDPSNPIRRPIS----ADSAIMNPASKVIALKA-GKTLQIFNIEMKSK-MKAHTM-TDDVTFWKWISLNT-  115 (327)
T ss_dssp             EEEEEEEETTSTTSCEEEECC----CSEEEECSSSSEEEEEE-TTEEEEEETTTTEE-EEEEEC-SSCCCEEEESSSSE-
T ss_pred             CceEEEEECCCCCcceecccc----hhhhhcCCCCcEEEEec-CCeEEEEehhHhhh-hceEEc-CCCcEEEEecCCCE-
Confidence            34799999976543 332221    22345678888887776 56899999998663 333332 34666667765543 


Q ss_pred             EEEEEeCCCeEEEEeCCCC-eeEEeec-------CCeeEEEEecCCCEEEEEEC-------CCcEEEEECCCCeEEEEEe
Q 047260          607 LFCFCDNDNEIQYWSINPF-LCTHITK-------GGTAQVRFQPRIGQLLAAAS-------DKVVSIFDIETDRQTHSLQ  671 (784)
Q Consensus       607 ll~sgs~dg~I~iwDl~~~-~~~~~~~-------~~v~~v~fsp~~~~Ll~~s~-------Dg~I~IwDl~t~~~i~~l~  671 (784)
                       |+... +..|+-|+++.. ...+.+.       ..+.....+++.++++..+-       .|.+.+|..+.. .-..++
T Consensus       116 -L~lVT-~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ie  192 (327)
T d1utca2         116 -VALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIE  192 (327)
T ss_dssp             -EEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEEC
T ss_pred             -EEEEc-CCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC-cCcccc
Confidence             33332 678999999532 2333332       34555667888888776552       367889988755 334567


Q ss_pred             CCCCCEEEEEEcCCC---CEEEEEe---C-CeEEEEeCCCCc--------eEEEec-cC---CCceEEEEEecCCCEEEE
Q 047260          672 GHAELVNYICWDTNG---DYLASVS---Q-NLVKVWSMASGE--------CIQELS-SN---GNQFHSCVFHPSYSTLLV  732 (784)
Q Consensus       672 ~h~~~V~sl~~spdg---~~Lasgs---d-d~I~IwDl~t~~--------~i~~l~-~~---~~~I~sl~fspdg~~L~s  732 (784)
                      +|......+.+..+.   .+++.+.   . +.+.|.++....        ....+. ..   .+-..++.+++....++.
T Consensus       193 Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyv  272 (327)
T d1utca2         193 GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFL  272 (327)
T ss_dssp             CSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEE
T ss_pred             ceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEE
Confidence            776655555443221   2333333   2 288888886521        111221 11   334568889999999999


Q ss_pred             EECCCeEEEEECCCCceEEec-ccCCceEEEEEeCCCCEEEEEECCCcEE
Q 047260          733 VGGISSLELWNMAENKSMTIA-AHENIISALAQSPVTGMVASASHDSSVK  781 (784)
Q Consensus       733 ~s~dg~I~Iwdl~~~~~~~~~-~h~~~V~slafspdg~~LaSgs~DG~V~  781 (784)
                      .+..|.|++||+.++.++... -..+.|-..+-..+..=++....+|.|.
T Consensus       273 iTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         273 ITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             EETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred             EecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCCeEE
Confidence            999999999999999998433 3455666555555555566666888764

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.71  E-value=0.012  Score=62.67  Aligned_cols=238  Identities=6%  Similarity=0.001  Sum_probs=134.8

Q ss_pred             eEEEEEcCCCCEEEEEe-C----CCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCC--------------
Q 047260          510 VTCCHFSSDGKLLASSG-H----DRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVD--------------  570 (784)
Q Consensus       510 V~~l~fspdg~~Lasgs-~----Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~D--------------  570 (784)
                      +..+++|||+++||.+- .    ...|+++|+.+++.+..... ......++|.+|++.|+....|              
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~-~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~  205 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTN  205 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCC
T ss_pred             ecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccc-cccccceEEcCCCCEEEEEEeccccCcccccccccC
Confidence            45667899999888542 2    24699999999987653211 1122568999999988765433              


Q ss_pred             --CeEEEEcCCCCcce-eeeccCC--CCCeEEEEEcCCCCcEEEEEeC--CCe--EEEEeCCCCe--------eEEeec-
Q 047260          571 --KSVRLWDAANPNFC-SQAYTGH--SSPIMSLDFHPKKTDLFCFCDN--DNE--IQYWSINPFL--------CTHITK-  632 (784)
Q Consensus       571 --g~I~IWdl~~~~~~-~~~~~~h--~~~V~sl~~sp~~~~ll~sgs~--dg~--I~iwDl~~~~--------~~~~~~-  632 (784)
                        ..|..|.+.+.... ...+...  ...+..+..+.++.++++....  +..  +.+.|+....        ...... 
T Consensus       206 ~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  285 (430)
T d1qfma1         206 LHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDN  285 (430)
T ss_dssp             CCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECS
T ss_pred             CcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeecc
Confidence              25778888765422 2223322  2346677788898887765542  333  4444543211        111111 


Q ss_pred             -CCeeEEEEecCCCEEEEEEC----CCcEEEEECCCCeE--EEE-EeCCCCCEEEEEEcCCCCEEE-EEeCC---eEEEE
Q 047260          633 -GGTAQVRFQPRIGQLLAAAS----DKVVSIFDIETDRQ--THS-LQGHAELVNYICWDTNGDYLA-SVSQN---LVKVW  700 (784)
Q Consensus       633 -~~v~~v~fsp~~~~Ll~~s~----Dg~I~IwDl~t~~~--i~~-l~~h~~~V~sl~~spdg~~La-sgsdd---~I~Iw  700 (784)
                       ........+ .+..++.-+.    ++.|...++.....  ... +..+...+..-.+...+.+|+ ...++   .|+++
T Consensus       286 ~~~~~~~~~~-~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~  364 (430)
T d1qfma1         286 FEGEYDYVTN-EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLH  364 (430)
T ss_dssp             SSSCEEEEEE-ETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEE
T ss_pred             cccceEEEec-CCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEeEEEEE
Confidence             111222222 3344444433    46777777765421  223 333445454444444444554 43343   89999


Q ss_pred             eCCCCceEEEeccCCCceEEEEEecCCCEEEEEECC----CeEEEEECCCCce
Q 047260          701 SMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGI----SSLELWNMAENKS  749 (784)
Q Consensus       701 Dl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~d----g~I~Iwdl~~~~~  749 (784)
                      ++.+++....+......|..+...++...+...-.+    .+++.||+.+++.
T Consensus       365 ~~~~~~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~  417 (430)
T d1qfma1         365 DLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL  417 (430)
T ss_dssp             ETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred             ECCCCcEEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCc
Confidence            999887766655555556555555555554443332    5899999988753

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.52  E-value=0.0088  Score=66.35  Aligned_cols=253  Identities=10%  Similarity=0.027  Sum_probs=142.9

Q ss_pred             CEEEEEeCCCeEEEEECCCCceeeecCCCC----CCeEEEEEccCCCEEEEEe------CCCeEEEEcCCCCcceeeecc
Q 047260          520 KLLASSGHDRKVVLWNMDTLQTESTPEDHK----SVVTDVRFRPNSSQLATAS------VDKSVRLWDAANPNFCSQAYT  589 (784)
Q Consensus       520 ~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~----~~It~i~fspdg~~Latgs------~Dg~I~IWdl~~~~~~~~~~~  589 (784)
                      ..|+.++.||.|.-.|.++++.+.......    ..++.--...++ .++.+.      .+|.|+-+|+.+++..-+...
T Consensus       116 ~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t  194 (571)
T d2ad6a1         116 GQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFA  194 (571)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             CeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeCC-eEEEeeccccccccCcEEEEECCCCcEEEEEec
Confidence            357778889999999999999876653211    112211111134 444444      368899999999875432211


Q ss_pred             C------------------------------------CCCCe-EEEEEcCCCCcEEEEEeC----------------CCe
Q 047260          590 G------------------------------------HSSPI-MSLDFHPKKTDLFCFCDN----------------DNE  616 (784)
Q Consensus       590 ~------------------------------------h~~~V-~sl~~sp~~~~ll~sgs~----------------dg~  616 (784)
                      .                                    ....+ ...++.++.. +++.+..                ...
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g-~~y~~tg~~~p~~~~~r~g~n~~s~s  273 (571)
T d2ad6a1         195 TGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLN-LFYYGSGNPAPWNETMRPGDNKWTMT  273 (571)
T ss_dssp             SSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTT-EEEEECCCCSCSCGGGSCSCCTTTTE
T ss_pred             cCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcC-eeeeecccccCccccccccccccccc
Confidence            0                                    01112 2234555544 3333322                245


Q ss_pred             EEEEeCCCCeeEEeecC------------CeeEEEEecCCC---EEEEEECCCcEEEEECCCCeEEEEEeCCC--C----
Q 047260          617 IQYWSINPFLCTHITKG------------GTAQVRFQPRIG---QLLAAASDKVVSIFDIETDRQTHSLQGHA--E----  675 (784)
Q Consensus       617 I~iwDl~~~~~~~~~~~------------~v~~v~fsp~~~---~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~--~----  675 (784)
                      |...|+++++.+..+..            ......+..+++   .++.++.+|.++++|.++++.+...+...  .    
T Consensus       274 vvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~~~  353 (571)
T d2ad6a1         274 IWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKK  353 (571)
T ss_dssp             EEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEE
T ss_pred             eeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCccccccc
Confidence            77778888877654431            112222333443   35666779999999999998875432110  0    


Q ss_pred             -------CE--------------------------EEEEEcCCCCEEEEEeC----------------------------
Q 047260          676 -------LV--------------------------NYICWDTNGDYLASVSQ----------------------------  694 (784)
Q Consensus       676 -------~V--------------------------~sl~~spdg~~Lasgsd----------------------------  694 (784)
                             ++                          ...+++|+..+++....                            
T Consensus       354 ~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (571)
T d2ad6a1         354 VDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYP  433 (571)
T ss_dssp             ECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred             ccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccceeecc
Confidence                   00                          11456666665554321                            


Q ss_pred             ----------CeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceEEecccCCce--EEE
Q 047260          695 ----------NLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIAAHENII--SAL  762 (784)
Q Consensus       695 ----------d~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~~~h~~~V--~sl  762 (784)
                                +.|..+|+.+++.+.+.......... .+.-.+..+++++.|+.++.+|.++++.+-...-...+  .-+
T Consensus       434 ~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~~~~~g-~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~  512 (571)
T d2ad6a1         434 GPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGG-TLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPM  512 (571)
T ss_dssp             CTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSB-CEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCE
T ss_pred             ccCCcccCCcccEEEeccCCCceeeEcCCCCCCCcc-eeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecce
Confidence                      25777888888887766533222111 22334567888999999999999999998332222222  224


Q ss_pred             EEeCCCC-EEEEEE
Q 047260          763 AQSPVTG-MVASAS  775 (784)
Q Consensus       763 afspdg~-~LaSgs  775 (784)
                      .|..||+ ||++..
T Consensus       513 ty~~dGkqYi~v~~  526 (571)
T d2ad6a1         513 TYSFKGKQYIGSMY  526 (571)
T ss_dssp             EEEETTEEEEEEEE
T ss_pred             EEEECCEEEEEEEe
Confidence            5555776 555443

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.52  E-value=0.004  Score=69.21  Aligned_cols=262  Identities=11%  Similarity=0.072  Sum_probs=148.3

Q ss_pred             CCCEEEEEeCCCeEEEEEC-CCCceeeecCCCCC----------Ce-EEEEEccCCCEEEEEeCCCeEEEEcCCCCccee
Q 047260          518 DGKLLASSGHDRKVVLWNM-DTLQTESTPEDHKS----------VV-TDVRFRPNSSQLATASVDKSVRLWDAANPNFCS  585 (784)
Q Consensus       518 dg~~Lasgs~Dg~I~IWd~-~t~~~~~~l~~h~~----------~I-t~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~  585 (784)
                      +|..+++.+.++.|...|. ++++.+.++.....          .+ ..+++.  +..|+.++.|+.+.-.|.++++...
T Consensus        62 ~g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~~~~g~l~alda~tG~~~w  139 (571)
T d2ad6a1          62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG--AGQIVKKQANGHLLALDAKTGKINW  139 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CCEEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceee--CCeEEEEeCCCcEEeeehhhhhhhc
Confidence            4444343334678888887 46888877642110          00 123443  3467888899999999999988543


Q ss_pred             eeccCC---CCCeEEE-EEcCCCCcEEEEEe------CCCeEEEEeCCCCeeEEeecC----------------------
Q 047260          586 QAYTGH---SSPIMSL-DFHPKKTDLFCFCD------NDNEIQYWSINPFLCTHITKG----------------------  633 (784)
Q Consensus       586 ~~~~~h---~~~V~sl-~~sp~~~~ll~sgs------~dg~I~iwDl~~~~~~~~~~~----------------------  633 (784)
                      ..-...   ...++.- .+. + . .++.+.      .+|.|+-+|+++++.+..+..                      
T Consensus       140 ~~~~~~~~~~~~~t~~p~v~-~-~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~  216 (571)
T d2ad6a1         140 EVEVCDPKVGSTLTQAPFVA-K-D-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQ  216 (571)
T ss_dssp             EEECCCGGGTCBCCSCCEEE-T-T-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCC
T ss_pred             cccccccccccceeecCeEe-C-C-eEEEeeccccccccCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCc
Confidence            321110   0111110 111 2 2 333333      367899999999888764321                      


Q ss_pred             ------------------Ce-eEEEEecCCCEEEEEEC----------------CCcEEEEECCCCeEEEEEeCCCCC--
Q 047260          634 ------------------GT-AQVRFQPRIGQLLAAAS----------------DKVVSIFDIETDRQTHSLQGHAEL--  676 (784)
Q Consensus       634 ------------------~v-~~v~fsp~~~~Ll~~s~----------------Dg~I~IwDl~t~~~i~~l~~h~~~--  676 (784)
                                        .+ ...++.+..+.++.+..                ...|...|+++++.+..+......  
T Consensus       217 ~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~W  296 (571)
T d2ad6a1         217 FGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEW  296 (571)
T ss_dssp             SSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSS
T ss_pred             ccccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccceeeeeccchhheecccccCcccc
Confidence                              01 23467777777776654                346888999999998887642211  


Q ss_pred             -------EEEEEEcCCCC---EEEEEe-CCeEEEEeCCCCceEEEeccCC------------------------------
Q 047260          677 -------VNYICWDTNGD---YLASVS-QNLVKVWSMASGECIQELSSNG------------------------------  715 (784)
Q Consensus       677 -------V~sl~~spdg~---~Lasgs-dd~I~IwDl~t~~~i~~l~~~~------------------------------  715 (784)
                             .....+..+++   .++..+ ++.+.++|..+|+.+.......                              
T Consensus       297 d~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~  376 (571)
T d2ad6a1         297 DFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGT  376 (571)
T ss_dssp             CCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEE
T ss_pred             ccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCcccccccccccccccccCcccccccccCce
Confidence                   11122223443   233343 4599999999998875432110                              


Q ss_pred             ---------CceEEEEEecCCCEEEEEECC-------------------------------------CeEEEEECCCCce
Q 047260          716 ---------NQFHSCVFHPSYSTLLVVGGI-------------------------------------SSLELWNMAENKS  749 (784)
Q Consensus       716 ---------~~I~sl~fspdg~~L~s~s~d-------------------------------------g~I~Iwdl~~~~~  749 (784)
                               ..-...+++|+...+++...+                                     |.|.-+|+.+++.
T Consensus       377 ~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~~  456 (571)
T d2ad6a1         377 NICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKA  456 (571)
T ss_dssp             EESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCE
T ss_pred             EEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccceeeccccCCcccCCcccEEEeccCCCce
Confidence                     000125677777666654432                                     4577788888887


Q ss_pred             EEecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          750 MTIAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       750 ~~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      +-...+..+..+-..+..+.+|++++.||.++.+|
T Consensus       457 ~W~~~~~~~~~~g~l~TagglVf~G~~dg~l~A~D  491 (571)
T d2ad6a1         457 KWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALD  491 (571)
T ss_dssp             EEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEE
T ss_pred             eeEcCCCCCCCcceeEecCCEEEEECCCCeEEEEE
Confidence            73222222221111223466888899999998775

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.51  E-value=0.059  Score=53.65  Aligned_cols=224  Identities=13%  Similarity=0.197  Sum_probs=145.8

Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCC
Q 047260          513 CHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHS  592 (784)
Q Consensus       513 l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~  592 (784)
                      .-.+|..+.||.-+ ..++.|||+++.+.++.+. ....|.-=.|-.+ +.|+..+ +..|.-|+++....+.+.+..|.
T Consensus        68 AIMhP~~~IiALra-g~~LQiFnletK~klks~~-~~e~VvfWkWis~-~~L~lVT-~taVYHW~~~g~s~P~k~fdR~~  143 (327)
T d1utca2          68 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT-MTDDVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRHS  143 (327)
T ss_dssp             EEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEE-CSSCCCEEEESSS-SEEEEEC-SSEEEEEESSSSCCCEEEEECCG
T ss_pred             hhcCCCCcEEEEec-CCeEEEEehhHhhhhceEE-cCCCcEEEEecCC-CEEEEEc-CCceEEEcccCCCCchhhhhhcc
Confidence            44678888887765 5689999999998888875 4456766777744 4555554 45799999976555666666554


Q ss_pred             ----CCeEEEEEcCCCCcEEEEEe--C----CCeEEEEeCCCCeeEEeecCCeeEEE-EecCC----CEEEEEEC----C
Q 047260          593 ----SPIMSLDFHPKKTDLFCFCD--N----DNEIQYWSINPFLCTHITKGGTAQVR-FQPRI----GQLLAAAS----D  653 (784)
Q Consensus       593 ----~~V~sl~~sp~~~~ll~sgs--~----dg~I~iwDl~~~~~~~~~~~~v~~v~-fsp~~----~~Ll~~s~----D  653 (784)
                          ..|..-..+++.++++++|=  .    .|.+.+|..+.. ....++++..++. +.-++    ..+++-..    .
T Consensus       144 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~  222 (327)
T d1utca2         144 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG  222 (327)
T ss_dssp             GGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTE
T ss_pred             cccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC-cCccccceeeeeEEEEcCCCCCCceEEEEEECCCCC
Confidence                45777777888888777662  2    367788888743 3344455554443 22121    12333222    3


Q ss_pred             CcEEEEECCCCe--------EEEEEe----CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEeCCCCceEEEeccCCCceEE
Q 047260          654 KVVSIFDIETDR--------QTHSLQ----GHAELVNYICWDTNGDYLASVS-QNLVKVWSMASGECIQELSSNGNQFHS  720 (784)
Q Consensus       654 g~I~IwDl~t~~--------~i~~l~----~h~~~V~sl~~spdg~~Lasgs-dd~I~IwDl~t~~~i~~l~~~~~~I~s  720 (784)
                      +.++|.++....        ....+.    .-.+--.++..++.-.++...+ .|.|.+||+.++.++..-+-....|..
T Consensus       223 ~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~  302 (327)
T d1utca2         223 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFV  302 (327)
T ss_dssp             EEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred             cEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEE
Confidence            688898886521        111111    1233445667777666666655 569999999999999888877777776


Q ss_pred             EEEecCCCEEEEEECCCeEEE
Q 047260          721 CVFHPSYSTLLVVGGISSLEL  741 (784)
Q Consensus       721 l~fspdg~~L~s~s~dg~I~I  741 (784)
                      .+-+.+..-+++...+|.|..
T Consensus       303 ~a~~~~~~Gi~~VNr~GqVl~  323 (327)
T d1utca2         303 TAPHEATAGIIGVNRKGQVLS  323 (327)
T ss_dssp             EEEETTTTEEEEEETTSEEEE
T ss_pred             eccCCCCceEEEECCCCeEEE
Confidence            666666666777777776654

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.42  E-value=0.0093  Score=62.64  Aligned_cols=186  Identities=17%  Similarity=0.188  Sum_probs=121.6

Q ss_pred             EEEEcC---CCCcEEEEEeCCCeEEEEeCCCCeeEEeec----CCeeEEEEe--cCCCEEEEEECC--------------
Q 047260          597 SLDFHP---KKTDLFCFCDNDNEIQYWSINPFLCTHITK----GGTAQVRFQ--PRIGQLLAAASD--------------  653 (784)
Q Consensus       597 sl~~sp---~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~----~~v~~v~fs--p~~~~Ll~~s~D--------------  653 (784)
                      .+.+..   ||+++|+.-..+..|.+.|++..++..+..    ..+..++..  |...++++.+.+              
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~  168 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV  168 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence            455543   788888888899999999999998876554    344555554  455677776652              


Q ss_pred             ----CcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEeCC----------------eEEEEeC-----------
Q 047260          654 ----KVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQN----------------LVKVWSM-----------  702 (784)
Q Consensus       654 ----g~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgsdd----------------~I~IwDl-----------  702 (784)
                          +.+.++|..+.+....+.. ......+.++++|+++++.+.+                .+.++++           
T Consensus       169 ~~y~~~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk  247 (459)
T d1fwxa2         169 ANYVNVFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD  247 (459)
T ss_dssp             G-EEEEEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred             hhcceEEEEEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCC
Confidence                2367899999888777653 2345678999999999887621                3444443           


Q ss_pred             ------------CC--C-ceEEEeccCCCceEEEEEecCCCEEEEEEC-CCeEEEEECCCCc-----------eE-Eecc
Q 047260          703 ------------AS--G-ECIQELSSNGNQFHSCVFHPSYSTLLVVGG-ISSLELWNMAENK-----------SM-TIAA  754 (784)
Q Consensus       703 ------------~t--~-~~i~~l~~~~~~I~sl~fspdg~~L~s~s~-dg~I~Iwdl~~~~-----------~~-~~~~  754 (784)
                                  +.  + ..++.+... .....|.++|||+++++++. +.++.|+|++.-.           .+ ....
T Consensus       248 ~~eingV~VVD~~~~~~~~v~~yIPVp-KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~e  326 (459)
T d1fwxa2         248 YQELNGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE  326 (459)
T ss_dssp             SEEETTEEEEECSGG--CSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCB
T ss_pred             cEEeCCceeecccccCCcceeEEEecC-CCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecc
Confidence                        21  0 112222221 23467899999999888876 5799999986311           11 1112


Q ss_pred             cCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          755 HENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       755 h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      ..-.....+|+..|....|.--|..|.-|+
T Consensus       327 lglgPLht~fd~~g~aytslfids~v~kw~  356 (459)
T d1fwxa2         327 LGLGPLHTAFDGRGNAYTSLFLDSQVVKWN  356 (459)
T ss_dssp             CCSCEEEEEECTTSEEEEEETTTTEEEEEE
T ss_pred             cCcCccccccCCCceEEEEeeccceEEEEe
Confidence            233456678888775555555788888885

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.39  E-value=0.018  Score=64.02  Aligned_cols=264  Identities=9%  Similarity=0.089  Sum_probs=150.6

Q ss_pred             CCCEEEEEeCCCeEEEEEC-CCCceeeecCCCC----------CC-eEEEEEccC----CCEEEEEeCCCeEEEEcCCCC
Q 047260          518 DGKLLASSGHDRKVVLWNM-DTLQTESTPEDHK----------SV-VTDVRFRPN----SSQLATASVDKSVRLWDAANP  581 (784)
Q Consensus       518 dg~~Lasgs~Dg~I~IWd~-~t~~~~~~l~~h~----------~~-It~i~fspd----g~~Latgs~Dg~I~IWdl~~~  581 (784)
                      +|.++++++.++.|...|. ++++.+.++....          .. -..+++.++    ..+|+.++.|+.|.-.|.+++
T Consensus        62 ~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG  141 (596)
T d1w6sa_          62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG  141 (596)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccC
Confidence            3443444444566777776 4677776653111          01 123455442    346888999999999999998


Q ss_pred             cceeeeccCCCC---CeE-EEEEcCCCCcEEEEEeC------CCeEEEEeCCCCeeEEeecC------------------
Q 047260          582 NFCSQAYTGHSS---PIM-SLDFHPKKTDLFCFCDN------DNEIQYWSINPFLCTHITKG------------------  633 (784)
Q Consensus       582 ~~~~~~~~~h~~---~V~-sl~~sp~~~~ll~sgs~------dg~I~iwDl~~~~~~~~~~~------------------  633 (784)
                      +.+...-.....   .++ .-.+.  +. .++++..      .|.|+-+|.++++.+-.+..                  
T Consensus       142 ~~~w~~~~~d~~~~~~~t~~P~v~--~~-~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~  218 (596)
T d1w6sa_         142 ETVWKVENSDIKVGSTLTIAPYVV--KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNP  218 (596)
T ss_dssp             CEEEEEECCCGGGTCBCCSCCEEE--TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCG
T ss_pred             ceeccccccccccccccccCCcEE--CC-eEEEeeccccccccCceEEEECCCCcEEEEeeccCCccccccccccccccc
Confidence            855443221110   111 01111  12 3444432      48999999999888765321                  


Q ss_pred             -----------------------CeeEEEEecCCCEEEEEECC----------------CcEEEEECCCCeEEEEEeC--
Q 047260          634 -----------------------GTAQVRFQPRIGQLLAAASD----------------KVVSIFDIETDRQTHSLQG--  672 (784)
Q Consensus       634 -----------------------~v~~v~fsp~~~~Ll~~s~D----------------g~I~IwDl~t~~~i~~l~~--  672 (784)
                                             .-..+++.+..+.++.+..+                ..|...|+++++.+..+..  
T Consensus       219 ~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~  298 (596)
T d1w6sa_         219 HYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTP  298 (596)
T ss_dssp             GGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESST
T ss_pred             cccccccccccCCCCceecCCCccccccccccCCCeeeccccccccccccccccccccccccccccccccccccccccee
Confidence                                   01234677777777776543                3488899999999887763  


Q ss_pred             CCC-------CEEEEE-EcCCCC---EEEEEe-CCeEEEEeCCCCceEEEeccCC-------------Cc----------
Q 047260          673 HAE-------LVNYIC-WDTNGD---YLASVS-QNLVKVWSMASGECIQELSSNG-------------NQ----------  717 (784)
Q Consensus       673 h~~-------~V~sl~-~spdg~---~Lasgs-dd~I~IwDl~t~~~i~~l~~~~-------------~~----------  717 (784)
                      |..       ....+. ...+|+   .++... .+.+.++|..+|+++.......             .+          
T Consensus       299 ~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~~~  378 (596)
T d1w6sa_         299 HDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRM  378 (596)
T ss_dssp             TCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCT
T ss_pred             ccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceeeeccccccccccccccccccccccCccccccC
Confidence            211       111122 223443   444444 3499999999998875432110             00          


Q ss_pred             ----------------eEEEEEecCCCEEEEEEC---------------------------------------CCeEEEE
Q 047260          718 ----------------FHSCVFHPSYSTLLVVGG---------------------------------------ISSLELW  742 (784)
Q Consensus       718 ----------------I~sl~fspdg~~L~s~s~---------------------------------------dg~I~Iw  742 (784)
                                      -...+++|+...+++...                                       .|.|.-|
T Consensus       379 ~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~g~~~~~~~~G~l~A~  458 (596)
T d1w6sa_         379 DHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAY  458 (596)
T ss_dssp             TCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEE
T ss_pred             CccceeEecccccccccCccccCCCCceEEecccccccccccccccccccccccccccccccCcccCcccCCCcceEEEE
Confidence                            012356666555544321                                       1467788


Q ss_pred             ECCCCceEEecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          743 NMAENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       743 dl~~~~~~~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      |+.+++.+-...+..++..-..+..+.+|+.|+.||.++.+|
T Consensus       459 D~~TG~~~W~~~~~~~~~gg~lsTagglVF~G~~Dg~l~A~D  500 (596)
T d1w6sa_         459 NAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARD  500 (596)
T ss_dssp             CTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEE
T ss_pred             eCCCCceecccCCCCCCccceeEecCCEEEEECCCCeEEEEE
Confidence            888888763333333332222334577888899999998875

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.33  E-value=0.0076  Score=66.73  Aligned_cols=262  Identities=11%  Similarity=0.079  Sum_probs=152.4

Q ss_pred             CEEEEEeCCCeEEEEECCCCceeeecCCCCC----------Ce-EEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeec
Q 047260          520 KLLASSGHDRKVVLWNMDTLQTESTPEDHKS----------VV-TDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAY  588 (784)
Q Consensus       520 ~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~----------~I-t~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~  588 (784)
                      ..|++++.++.|.-.|.++++.+.++.....          .+ ..++.  .+..++.+..|+.|.-.|..+++.+-...
T Consensus        67 g~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~g~l~Alda~tG~~~w~~~  144 (560)
T d1kv9a2          67 GVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQQ  144 (560)
T ss_dssp             TEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CEEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcce--eCCeEEEEeCCCEEEEEECCCCcEEeccC
Confidence            3566677889999999999999887632211          01 11222  24468888899999999999887543322


Q ss_pred             cCCCCCeEEEEEcC--CCCcEEEEEe------CCCeEEEEeCCCCeeEEeecC---------------------------
Q 047260          589 TGHSSPIMSLDFHP--KKTDLFCFCD------NDNEIQYWSINPFLCTHITKG---------------------------  633 (784)
Q Consensus       589 ~~h~~~V~sl~~sp--~~~~ll~sgs------~dg~I~iwDl~~~~~~~~~~~---------------------------  633 (784)
                      .........+.-.|  .+. .++.+.      ..|.|.-+|.++++.+-.+..                           
T Consensus       145 ~~~~~~~~~~~~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (560)
T d1kv9a2         145 TTDPAKPYSITGAPRVVKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYW  223 (560)
T ss_dssp             CSCTTSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHH
T ss_pred             ccCcccceeeeeeeeeecC-cccccccceeccccceEEEEECCCceEEeeeeeccccccCCccccccccccccccccccc
Confidence            21111111110011  011 333332      236799999998887765431                           


Q ss_pred             ------Ce-eEEEEecCCCEEEEEEC-------------------CCcEEEEECCCCeEEEEEeCCCCCE---------E
Q 047260          634 ------GT-AQVRFQPRIGQLLAAAS-------------------DKVVSIFDIETDRQTHSLQGHAELV---------N  678 (784)
Q Consensus       634 ------~v-~~v~fsp~~~~Ll~~s~-------------------Dg~I~IwDl~t~~~i~~l~~h~~~V---------~  678 (784)
                            .+ ..+.+.+..+.++.+..                   ...|...|+++++.+..+......+         .
T Consensus       224 ~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~  303 (560)
T d1kv9a2         224 KLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQIT  303 (560)
T ss_dssp             HHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEE
T ss_pred             cccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEecCCccceeEEEeccccccccccccceee
Confidence                  01 12567777777666442                   2457888999999887775422211         1


Q ss_pred             EEEEcCCCC---EEEEEe-CCeEEEEeCCCCceEEEeccCCC------------------------------------ce
Q 047260          679 YICWDTNGD---YLASVS-QNLVKVWSMASGECIQELSSNGN------------------------------------QF  718 (784)
Q Consensus       679 sl~~spdg~---~Lasgs-dd~I~IwDl~t~~~i~~l~~~~~------------------------------------~I  718 (784)
                      -+.+..+++   .++.+. ++.+.++|..+++++........                                    .-
T Consensus       304 l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w  383 (560)
T d1kv9a2         304 LAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNW  383 (560)
T ss_dssp             EEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCS
T ss_pred             eeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccccChhhccccccccccccccceeeeecccccccc
Confidence            122222333   344444 44899999999988765432110                                    01


Q ss_pred             EEEEEecCCCEEEEEEC------------------------------------CCeEEEEECCCCceEEecccCCceEEE
Q 047260          719 HSCVFHPSYSTLLVVGG------------------------------------ISSLELWNMAENKSMTIAAHENIISAL  762 (784)
Q Consensus       719 ~sl~fspdg~~L~s~s~------------------------------------dg~I~Iwdl~~~~~~~~~~h~~~V~sl  762 (784)
                      ...+++|+...+++...                                    .|.|.-||+.+++.+-.........+-
T Consensus       384 ~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~~~~~~gg  463 (560)
T d1kv9a2         384 HSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGG  463 (560)
T ss_dssp             SCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCC
T ss_pred             ccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCcccccceEEEeCCCCeEeeeccCCCCCCCc
Confidence            24567777776665442                                    246788999999887333333333222


Q ss_pred             EEeCCCCEEEEEECCCcEEEeC
Q 047260          763 AQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       763 afspdg~~LaSgs~DG~V~IWd  784 (784)
                      ..+-.+.+|+.|+.||.++.+|
T Consensus       464 ~l~TagglVF~G~~dg~l~A~D  485 (560)
T d1kv9a2         464 TLSTAGNLVFQGTAAGQMHAYS  485 (560)
T ss_dssp             EEEETTTEEEEECTTSEEEEEE
T ss_pred             eeEECCCEEEEECCCCcEEEEE
Confidence            2344567888899999998875

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.25  E-value=0.031  Score=61.57  Aligned_cols=256  Identities=9%  Similarity=0.057  Sum_probs=143.4

Q ss_pred             CCEEEEEeCCCeEEEEECCCCceeeecCCCCC-CeEEEEEcc--CCCEEEEEeC------CCeEEEEcCCCCcceeeecc
Q 047260          519 GKLLASSGHDRKVVLWNMDTLQTESTPEDHKS-VVTDVRFRP--NSSQLATASV------DKSVRLWDAANPNFCSQAYT  589 (784)
Q Consensus       519 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~-~It~i~fsp--dg~~Latgs~------Dg~I~IWdl~~~~~~~~~~~  589 (784)
                      +..++.+..|+.|.-.|..+++.+.....+.. .-..+.-.|  ....++.+..      .|.|+-+|+++++..-+...
T Consensus       117 ~~~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t  196 (560)
T d1kv9a2         117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT  196 (560)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred             CCeEEEEeCCCEEEEEECCCCcEEeccCccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeeee
Confidence            44677788899999999999998877643221 001111111  1223444322      36799999999885433322


Q ss_pred             CC-----------------------------CCCe-EEEEEcCCCCcEEEEEeC------------------CCeEEEEe
Q 047260          590 GH-----------------------------SSPI-MSLDFHPKKTDLFCFCDN------------------DNEIQYWS  621 (784)
Q Consensus       590 ~h-----------------------------~~~V-~sl~~sp~~~~ll~sgs~------------------dg~I~iwD  621 (784)
                      ..                             ...+ ..+.+.+....+++..+.                  ...|.-.|
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld  276 (560)
T d1kv9a2         197 VPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIR  276 (560)
T ss_dssp             SCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEEC
T ss_pred             ccccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEec
Confidence            11                             0111 124455555433332211                  23566778


Q ss_pred             CCCCeeEEeecC------------CeeEEEEecCCC---EEEEEECCCcEEEEECCCCeEEEEEeCCC-CCE--------
Q 047260          622 INPFLCTHITKG------------GTAQVRFQPRIG---QLLAAASDKVVSIFDIETDRQTHSLQGHA-ELV--------  677 (784)
Q Consensus       622 l~~~~~~~~~~~------------~v~~v~fsp~~~---~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~-~~V--------  677 (784)
                      +++++....+..            ...-+.+..++.   .++.+..+|.+.++|.++++++.....-. ...        
T Consensus       277 ~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~  356 (560)
T d1kv9a2         277 PDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATG  356 (560)
T ss_dssp             TTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTC
T ss_pred             CCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccccChhhc
Confidence            887776654321            111122333332   35566678999999999999876543211 000        


Q ss_pred             ---------------------------EEEEEcCCCCEEEEEeC------------------------------------
Q 047260          678 ---------------------------NYICWDTNGDYLASVSQ------------------------------------  694 (784)
Q Consensus       678 ---------------------------~sl~~spdg~~Lasgsd------------------------------------  694 (784)
                                                 ...+++|+..+++....                                    
T Consensus       357 ~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  436 (560)
T d1kv9a2         357 RPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVV  436 (560)
T ss_dssp             CEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGC
T ss_pred             cccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCccc
Confidence                                       12356666666554321                                    


Q ss_pred             -CeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceEEecccCCceE--EEEEeCCCC-E
Q 047260          695 -NLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIAAHENIIS--ALAQSPVTG-M  770 (784)
Q Consensus       695 -d~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~~~h~~~V~--slafspdg~-~  770 (784)
                       +.|.-||+.+++.+..+.... ....-.+.-.+..+++++.||.++.+|.++++.+-...-...+.  -+.+..+|+ |
T Consensus       437 ~G~l~A~D~~tGk~~W~~~~~~-~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqy  515 (560)
T d1kv9a2         437 SGALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQY  515 (560)
T ss_dssp             EEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             ccceEEEeCCCCeEeeeccCCC-CCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence             257788999999888775432 22222334456688899999999999999999982221111111  134455675 5


Q ss_pred             EEEEE
Q 047260          771 VASAS  775 (784)
Q Consensus       771 LaSgs  775 (784)
                      |++.+
T Consensus       516 v~v~a  520 (560)
T d1kv9a2         516 VAIMA  520 (560)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            55443

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.24  E-value=0.019  Score=63.57  Aligned_cols=259  Identities=12%  Similarity=0.079  Sum_probs=148.4

Q ss_pred             EEEEEeCCCeEEEEECCCCceeeecCCCC----------CCe-EEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeecc
Q 047260          521 LLASSGHDRKVVLWNMDTLQTESTPEDHK----------SVV-TDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYT  589 (784)
Q Consensus       521 ~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~----------~~I-t~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~  589 (784)
                      .|++++.++.|.-+|.++++.+.++....          ..+ ..+.+.  ...++.++.|+.+...|.++++.+-....
T Consensus        79 ~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~v~~~t~~g~l~alda~tG~~~W~~~~  156 (573)
T d1kb0a2          79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW--KGKVYVGAWDGRLIALDAATGKEVWHQNT  156 (573)
T ss_dssp             EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEET
T ss_pred             EEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEE--CCcEEEEecccceeeeccccccceecccC
Confidence            56667888999999999999988764211          111 122232  33677788899999999998875433211


Q ss_pred             -CCC-CCeE--E-EEEcCCCCcEEEEEe------CCCeEEEEeCCCCeeEEeecC-------------------------
Q 047260          590 -GHS-SPIM--S-LDFHPKKTDLFCFCD------NDNEIQYWSINPFLCTHITKG-------------------------  633 (784)
Q Consensus       590 -~h~-~~V~--s-l~~sp~~~~ll~sgs------~dg~I~iwDl~~~~~~~~~~~-------------------------  633 (784)
                       .+. ..+.  . ..+. + . .++++.      ..|.|+.+|.++++.+..+..                         
T Consensus       157 ~~~~~~~~~~~~~p~v~-~-~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~t~~~~~  233 (573)
T d1kb0a2         157 FEGQKGSLTITGAPRVF-K-G-KVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSG  233 (573)
T ss_dssp             TTTCCSSCBCCSCCEEE-T-T-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGG
T ss_pred             ccCCcceEEeecceEEE-e-c-cEEEeeccccccccceEEEEecCCccceeeeeeccccCCCCCCcccccccccccCCCC
Confidence             111 1111  0 0011 1 2 333332      246899999999887765421                         


Q ss_pred             ---------Ce-eEEEEecCCCEEEEEEC-------------------CCcEEEEECCCCeEEEEEeCCCC---------
Q 047260          634 ---------GT-AQVRFQPRIGQLLAAAS-------------------DKVVSIFDIETDRQTHSLQGHAE---------  675 (784)
Q Consensus       634 ---------~v-~~v~fsp~~~~Ll~~s~-------------------Dg~I~IwDl~t~~~i~~l~~h~~---------  675 (784)
                               .+ ....+.+....++....                   ...|...|+++++....+.....         
T Consensus       234 ~~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG~~~W~~q~~~~d~wd~d~~~  313 (573)
T d1kb0a2         234 KWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQ  313 (573)
T ss_dssp             CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCS
T ss_pred             ceeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEecccchheeecccccCcccccccccc
Confidence                     01 13456777666665432                   13577888899988776653211         


Q ss_pred             CEEEEEEcCCCC---EEEEEe-CCeEEEEeCCCCceEEEeccCC-----------------------------------C
Q 047260          676 LVNYICWDTNGD---YLASVS-QNLVKVWSMASGECIQELSSNG-----------------------------------N  716 (784)
Q Consensus       676 ~V~sl~~spdg~---~Lasgs-dd~I~IwDl~t~~~i~~l~~~~-----------------------------------~  716 (784)
                      .........++.   +++.++ ++.+.++|..+|+.+.......                                   .
T Consensus       314 ~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~  393 (573)
T d1kb0a2         314 PMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAH  393 (573)
T ss_dssp             CCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSS
T ss_pred             eeeecceecCCCceeeeeeccccceeEEeccccccccccccccccccccccccccceeeeeeccccccceEEeecccCCc
Confidence            112222223332   344444 4499999999999876543211                                   0


Q ss_pred             ceEEEEEecCCCEEEEEECC-------------------------------------------CeEEEEECCCCceEEec
Q 047260          717 QFHSCVFHPSYSTLLVVGGI-------------------------------------------SSLELWNMAENKSMTIA  753 (784)
Q Consensus       717 ~I~sl~fspdg~~L~s~s~d-------------------------------------------g~I~Iwdl~~~~~~~~~  753 (784)
                      .-...+++|+...+++...+                                           |.|.-||+.+++.+-..
T Consensus       394 ~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~G~l~AiD~~tGk~~W~~  473 (573)
T d1kb0a2         394 NWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSV  473 (573)
T ss_dssp             CSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEE
T ss_pred             cccccccCCCcceEEeeccccceeeecccccccccCCCCccccccccccccccccCCCCCCCcccEEEeCCCCCceEeee
Confidence            01234677777666654322                                           35677788888777333


Q ss_pred             ccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          754 AHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       754 ~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      .+..+...=..+-.+.+|++|+.||.++.||
T Consensus       474 ~~~~p~~gg~lstagglVF~G~~dg~l~A~D  504 (573)
T d1kb0a2         474 EHVSPWNGGTLTTAGNVVFQGTADGRLVAYH  504 (573)
T ss_dssp             EESSSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred             cCCCCCCCceEEEcCCEEEEECCCCeEEEEE
Confidence            2222222212234577888899999998876

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.07  E-value=0.048  Score=60.49  Aligned_cols=249  Identities=11%  Similarity=-0.007  Sum_probs=141.8

Q ss_pred             CCEEEEEeCCCeEEEEECCCCceeeecCCCC----CCeEE-EEEccCCCEEEEEeC------CCeEEEEcCCCCcceeee
Q 047260          519 GKLLASSGHDRKVVLWNMDTLQTESTPEDHK----SVVTD-VRFRPNSSQLATASV------DKSVRLWDAANPNFCSQA  587 (784)
Q Consensus       519 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~----~~It~-i~fspdg~~Latgs~------Dg~I~IWdl~~~~~~~~~  587 (784)
                      +.+|+.++.|+.|.-.|.++++.+..+....    ..++. -.+  .+..++++..      .|.|+-+|+++++..-+.
T Consensus       121 ~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v--~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~  198 (596)
T d1w6sa_         121 PALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV--VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRA  198 (596)
T ss_dssp             CCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE--ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred             ceEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcE--ECCeEEEeeccccccccCceEEEECCCCcEEEEe
Confidence            3468888999999999999999988764221    11111 111  1334555543      488999999998854332


Q ss_pred             ccC-------------------------------------CCCCeEEEEEcCCCCcEEEEEeC----------------C
Q 047260          588 YTG-------------------------------------HSSPIMSLDFHPKKTDLFCFCDN----------------D  614 (784)
Q Consensus       588 ~~~-------------------------------------h~~~V~sl~~sp~~~~ll~sgs~----------------d  614 (784)
                      ...                                     ....-..+.+.+... +++.+..                .
T Consensus       199 ~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~-lvy~~tg~~~p~~~~~r~g~n~ys  277 (596)
T d1w6sa_         199 YATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTN-LIYFGTGNPAPWNETMRPGDNKWT  277 (596)
T ss_dssp             ESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTT-EEEEECCCCSCSCGGGSCSCCTTS
T ss_pred             eccCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCC-eeeccccccccccccccccccccc
Confidence            110                                     001112334555544 3333322                2


Q ss_pred             CeEEEEeCCCCeeEEeecC------------CeeEEEE-ecCCC---EEEEEECCCcEEEEECCCCeEEEEEeCCC--C-
Q 047260          615 NEIQYWSINPFLCTHITKG------------GTAQVRF-QPRIG---QLLAAASDKVVSIFDIETDRQTHSLQGHA--E-  675 (784)
Q Consensus       615 g~I~iwDl~~~~~~~~~~~------------~v~~v~f-sp~~~---~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~--~-  675 (784)
                      ..|...|+++++.+..+..            ....+.. ..++.   .++....+|.+.++|..+++++...+...  . 
T Consensus       278 ~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~~~~~~~~~  357 (596)
T d1w6sa_         278 MTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNV  357 (596)
T ss_dssp             SEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCS
T ss_pred             ccccccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceeeeccccccccc
Confidence            3577788888887664431            1111111 22332   46667778999999999998875432100  0 


Q ss_pred             ----------C-------------E-------------EEEEEcCCCCEEEEEeC-------------------------
Q 047260          676 ----------L-------------V-------------NYICWDTNGDYLASVSQ-------------------------  694 (784)
Q Consensus       676 ----------~-------------V-------------~sl~~spdg~~Lasgsd-------------------------  694 (784)
                                +             -             ...+++|+..+++....                         
T Consensus       358 ~~~~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~~~~~~~~g~~~~g~~~~  437 (596)
T d1w6sa_         358 FKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLN  437 (596)
T ss_dssp             EEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred             cccccccccccccCccccccCCccceeEecccccccccCccccCCCCceEEecccccccccccccccccccccccccccc
Confidence                      0             0             11245555544443211                         


Q ss_pred             ---------------CeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceEEecc-----
Q 047260          695 ---------------NLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIAA-----  754 (784)
Q Consensus       695 ---------------d~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~~~-----  754 (784)
                                     +.|.-||+.+++.+...... ..+..-.++..+..+++++.||.++.+|.++++.+-...     
T Consensus       438 ~~~~~~g~~~~~~~~G~l~A~D~~TG~~~W~~~~~-~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~  516 (596)
T d1w6sa_         438 MYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGA  516 (596)
T ss_dssp             EEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC
T ss_pred             cccCcccCcccCCCcceEEEEeCCCCceecccCCC-CCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCc
Confidence                           25777888888877665432 222222334456788889999999999999999983221     


Q ss_pred             cCCceEEEEEeCCCC-EEEEE
Q 047260          755 HENIISALAQSPVTG-MVASA  774 (784)
Q Consensus       755 h~~~V~slafspdg~-~LaSg  774 (784)
                      +..+   +.|..+|+ ||+..
T Consensus       517 ~a~P---~tY~~dGkQYvav~  534 (596)
T d1w6sa_         517 IGYP---MTYTHKGTQYVAIY  534 (596)
T ss_dssp             CSCC---EEEEETTEEEEEEE
T ss_pred             ccCC---eEEEECCEEEEEEE
Confidence            2223   33445776 55543

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.06  E-value=0.074  Score=58.56  Aligned_cols=54  Identities=6%  Similarity=0.111  Sum_probs=39.9

Q ss_pred             eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE
Q 047260          696 LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM  750 (784)
Q Consensus       696 ~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~  750 (784)
                      .|.-||+.+++.+..+..... ...-...-.+..+++++.||.++.||.++++.+
T Consensus       458 ~l~AiD~~tGk~~W~~~~~~p-~~gg~lstagglVF~G~~dg~l~A~Da~TGe~L  511 (573)
T d1kb0a2         458 RLLAWDPVAQKAAWSVEHVSP-WNGGTLTTAGNVVFQGTADGRLVAYHAATGEKL  511 (573)
T ss_dssp             EEEEEETTTTEEEEEEEESSS-CCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             cEEEeCCCCCceEeeecCCCC-CCCceEEEcCCEEEEECCCCeEEEEECCCCcEe
Confidence            477788888888877754321 111223446778889999999999999999998

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.95  E-value=0.24  Score=54.40  Aligned_cols=263  Identities=10%  Similarity=0.031  Sum_probs=145.5

Q ss_pred             CCEEEEEeCCCeEEEEECCCCceeeecCCCC--------CCe-EEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeecc
Q 047260          519 GKLLASSGHDRKVVLWNMDTLQTESTPEDHK--------SVV-TDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYT  589 (784)
Q Consensus       519 g~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~--------~~I-t~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~  589 (784)
                      +..|++++.++.|.-.|..+++.+.++....        ..+ ..+++.  +..|+.++.|+.+...|.++++.+-....
T Consensus        68 ~g~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~t~~~~l~alda~tG~~~W~~~~  145 (582)
T d1flga_          68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIY--GDKVFFGTLDASVVALNKNTGKVVWKKKF  145 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEE--TTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred             CCEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceEe--CCceEEecCCCeEEEecccccceeeeecc
Confidence            3456677888889999999999887763210        111 122332  45678888999999999998875432221


Q ss_pred             C-C------CCCeEEEEEcCCCCcEEEEE------eCCCeEEEEeCCCCeeEEeecC-----------------------
Q 047260          590 G-H------SSPIMSLDFHPKKTDLFCFC------DNDNEIQYWSINPFLCTHITKG-----------------------  633 (784)
Q Consensus       590 ~-h------~~~V~sl~~sp~~~~ll~sg------s~dg~I~iwDl~~~~~~~~~~~-----------------------  633 (784)
                      . +      ......+.--.....+++.+      ...+.|.-+|.++++.+-.+..                       
T Consensus       146 ~~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~d~~~~g~~~~~~  225 (582)
T d1flga_         146 ADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPS  225 (582)
T ss_dssp             SCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTT
T ss_pred             cCCCccceeecCceEecCCcEeEEEEEeCccccccccccceEEecCCCCcEEEEEeccCCcccccccccccccccccccc
Confidence            1 1      01111111001122223322      1245678888887666543310                       


Q ss_pred             --------------------Ce-eEEEEecCCCEEEEEEC------------------------CCcEEEEECCCCeEEE
Q 047260          634 --------------------GT-AQVRFQPRIGQLLAAAS------------------------DKVVSIFDIETDRQTH  668 (784)
Q Consensus       634 --------------------~v-~~v~fsp~~~~Ll~~s~------------------------Dg~I~IwDl~t~~~i~  668 (784)
                                          .+ ..+++.+..+.++.+..                        ...|...|+++++...
T Consensus       226 ~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~~~vy~~tgn~~p~~~~~~~~~g~~~~~~dn~ys~SvvAld~~tG~~~W  305 (582)
T d1flga_         226 WPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKW  305 (582)
T ss_dssp             SCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEE
T ss_pred             CCCccccccCCccceecCCCcccccceeccccceEEeccCCcccccccccccCCCCcCcccccccceeEEecccchhhhh
Confidence                                01 23567777777777652                        2357888999998887


Q ss_pred             EEeC--CCCC--------E-EEEEEcCCCC---EEEEEe-CCeEEEEeCCCCceEEEeccCCC-----------------
Q 047260          669 SLQG--HAEL--------V-NYICWDTNGD---YLASVS-QNLVKVWSMASGECIQELSSNGN-----------------  716 (784)
Q Consensus       669 ~l~~--h~~~--------V-~sl~~spdg~---~Lasgs-dd~I~IwDl~t~~~i~~l~~~~~-----------------  716 (784)
                      .+..  |...        + ..+.. .+++   .++... .+.+.++|..+++++........                 
T Consensus       306 ~~q~~~~D~wd~d~~~~p~l~d~~~-~~g~~~~~v~~~~k~g~~~vldr~tG~~i~~~~~~~~~~~~~~~d~~~~~~~~~  384 (582)
T d1flga_         306 FYQHTPNDAWDFSGNNELVLFDYKA-KDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVER  384 (582)
T ss_dssp             EEESSTTCCSCCCCCCCCEEEEEEC-SSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEEC
T ss_pred             ccccccccccccccccccccccccc-ccccccceeEeecccccEEeecccCCcccccccccCccccccccccccccceec
Confidence            7753  2211        1 11222 2333   233333 33889999988887654321110                 


Q ss_pred             ----------------------------ceEEEEEecCCCEEEEEEC---------------------------------
Q 047260          717 ----------------------------QFHSCVFHPSYSTLLVVGG---------------------------------  735 (784)
Q Consensus       717 ----------------------------~I~sl~fspdg~~L~s~s~---------------------------------  735 (784)
                                                  .....+++|+...+++...                                 
T Consensus       385 ~~~~~~~~~~~~~~~~~~~~~P~~~gg~~w~~~a~dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  464 (582)
T d1flga_         385 EGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDH  464 (582)
T ss_dssp             TTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSC
T ss_pred             cccccccccccccccceEEECCCccCCcccccceecCCCCceeeeccccccccccccccccccccccccCccccccccCC
Confidence                                        0112345555554444322                                 


Q ss_pred             CCeEEEEECCCCceEEecccCCceEEEEEeCCCCEEEEEECCCcEEEeC
Q 047260          736 ISSLELWNMAENKSMTIAAHENIISALAQSPVTGMVASASHDSSVKLWK  784 (784)
Q Consensus       736 dg~I~Iwdl~~~~~~~~~~h~~~V~slafspdg~~LaSgs~DG~V~IWd  784 (784)
                      .|.|.-+|+.+++.+-......++..-..+..+.+|++|+.||.++.+|
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~D  513 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFD  513 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEE
T ss_pred             CCeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEE
Confidence            2567788888888773322223333222344677888899999998875

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.89  E-value=0.039  Score=56.58  Aligned_cols=226  Identities=11%  Similarity=0.047  Sum_probs=117.0

Q ss_pred             ceEEEEEcCCCCEEEEEeCC-CeEEEEECCCCceeeecCC-CCCCeEEEEEccCCCEEEEEeCC------CeEEEEcCCC
Q 047260          509 KVTCCHFSSDGKLLASSGHD-RKVVLWNMDTLQTESTPED-HKSVVTDVRFRPNSSQLATASVD------KSVRLWDAAN  580 (784)
Q Consensus       509 ~V~~l~fspdg~~Lasgs~D-g~I~IWd~~t~~~~~~l~~-h~~~It~i~fspdg~~Latgs~D------g~I~IWdl~~  580 (784)
                      .....++.++|++++.|+.+ ..+.+||..+..-...-.. ....-..++..+|+++++.++.+      ..+.+||..+
T Consensus        77 ~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~  156 (387)
T d1k3ia3          77 FCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS  156 (387)
T ss_dssp             SSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred             ceeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCC
Confidence            34456788999999988765 5799999987554332211 11122456667799999988753      3689999987


Q ss_pred             Ccceeeec--------cCCCC-----CeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec-----------CCee
Q 047260          581 PNFCSQAY--------TGHSS-----PIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK-----------GGTA  636 (784)
Q Consensus       581 ~~~~~~~~--------~~h~~-----~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~-----------~~v~  636 (784)
                      ........        ..+..     .-..+...+++. +++.+...+.+.++|..+........           ....
T Consensus       157 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (387)
T d1k3ia3         157 KTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGS-VFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGN  235 (387)
T ss_dssp             TEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGC-EEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCE
T ss_pred             CceeecCCCcccccccccccceeeccceeEEEEeCCCC-EEEecCcCCcEEecCcccCcEeeccccccCcccCccccccc
Confidence            65321100        00000     001111222333 55556666677777776654332211           0112


Q ss_pred             EEEEe-cCCCEEEEEECC--------CcEEEEECCCC---eEEEEEeC---CCCCEEEEEEcCCCCEEEEEeC-------
Q 047260          637 QVRFQ-PRIGQLLAAASD--------KVVSIFDIETD---RQTHSLQG---HAELVNYICWDTNGDYLASVSQ-------  694 (784)
Q Consensus       637 ~v~fs-p~~~~Ll~~s~D--------g~I~IwDl~t~---~~i~~l~~---h~~~V~sl~~spdg~~Lasgsd-------  694 (784)
                      ++.+. .+++.++.++..        ....++++...   ........   +...-.+.+..+||++++.|+.       
T Consensus       236 ~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~  315 (387)
T d1k3ia3         236 AVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFE  315 (387)
T ss_dssp             EEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTC
T ss_pred             EEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCC
Confidence            23333 244455555431        13334443321   11111111   1122234556689998888762       


Q ss_pred             C-----eEEEEeCCCCceEE--EeccCCCceEEEEEecCCCEEEEEEC
Q 047260          695 N-----LVKVWSMASGECIQ--ELSSNGNQFHSCVFHPSYSTLLVVGG  735 (784)
Q Consensus       695 d-----~I~IwDl~t~~~i~--~l~~~~~~I~sl~fspdg~~L~s~s~  735 (784)
                      +     .+.+||..+.+-..  .+......-....+.+|++.++.|+.
T Consensus       316 ~~~~~~~ve~Ydp~~~~W~~~~~~~~~R~~Hs~a~l~~dG~v~v~GG~  363 (387)
T d1k3ia3         316 DSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  363 (387)
T ss_dssp             CCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             CCcEeceEEEEECCCCeEEECCCCCCcccceEEEEECCCCEEEEEeCC
Confidence            1     47889987764321  11111111123446789998888874

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.40  E-value=0.47  Score=49.55  Aligned_cols=220  Identities=8%  Similarity=0.076  Sum_probs=120.1

Q ss_pred             CCCCCeEEEEEccCCCEEEEEe-CC----CeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeC--------
Q 047260          547 DHKSVVTDVRFRPNSSQLATAS-VD----KSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDN--------  613 (784)
Q Consensus       547 ~h~~~It~i~fspdg~~Latgs-~D----g~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~--------  613 (784)
                      ++.-.+..++++|++++++.+- .+    ..|+++|+.+++.....+..  .....++|.+++..++.+.-.        
T Consensus       122 ~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~--~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~  199 (430)
T d1qfma1         122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--VKFSCMAWTHDGKGMFYNAYPQQDGKSDG  199 (430)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--ECSCCEEECTTSSEEEEEECCCCSSCCSS
T ss_pred             cccceecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccccc--ccccceEEcCCCCEEEEEEeccccCcccc
Confidence            3444456678899999887543 23    36999999998754444332  123568899999877776532        


Q ss_pred             -------CCeEEEEeCCCCee--EEeec---C--CeeEEEEecCCCEEEEEEC---CCc--EEEEECCCCe--------E
Q 047260          614 -------DNEIQYWSINPFLC--THITK---G--GTAQVRFQPRIGQLLAAAS---DKV--VSIFDIETDR--------Q  666 (784)
Q Consensus       614 -------dg~I~iwDl~~~~~--~~~~~---~--~v~~v~fsp~~~~Ll~~s~---Dg~--I~IwDl~t~~--------~  666 (784)
                             ...|..+.+.+...  ...+.   .  .+..+..+.++.+++....   +..  +.+.|+....        .
T Consensus       200 ~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  279 (430)
T d1qfma1         200 TETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKW  279 (430)
T ss_dssp             SCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCC
T ss_pred             cccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccce
Confidence                   12577777765321  22222   1  2445667889888775443   233  4445544321        1


Q ss_pred             EEEEeCCCCCEEEEEEcCCCCEEEEEeC----CeEEEEeCCCCce--EEEe-ccCCCceEEEEEecCCCEEEEEE-CCC-
Q 047260          667 THSLQGHAELVNYICWDTNGDYLASVSQ----NLVKVWSMASGEC--IQEL-SSNGNQFHSCVFHPSYSTLLVVG-GIS-  737 (784)
Q Consensus       667 i~~l~~h~~~V~sl~~spdg~~Lasgsd----d~I~IwDl~t~~~--i~~l-~~~~~~I~sl~fspdg~~L~s~s-~dg-  737 (784)
                      ...+......+.-+. +.++.+++....    ..|...++.....  ...+ ..+...+..-.+...+.+|+... .++ 
T Consensus       280 ~~~~~~~~~~~~~~~-~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~  358 (430)
T d1qfma1         280 VKLIDNFEGEYDYVT-NEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVK  358 (430)
T ss_dssp             EEEECSSSSCEEEEE-EETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTE
T ss_pred             eEeecccccceEEEe-cCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCE
Confidence            222222233333322 233334443332    2677777765422  2233 33444455445555555666554 444 


Q ss_pred             -eEEEEECCCCceEEec-ccCCceEEEEEeCCCC
Q 047260          738 -SLELWNMAENKSMTIA-AHENIISALAQSPVTG  769 (784)
Q Consensus       738 -~I~Iwdl~~~~~~~~~-~h~~~V~slafspdg~  769 (784)
                       .|+++++.++....+. ...+.|..+...++..
T Consensus       359 ~~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~  392 (430)
T d1qfma1         359 NTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDT  392 (430)
T ss_dssp             EEEEEEETTTCCEEEEECCCSSEEEEEECCTTCS
T ss_pred             eEEEEEECCCCcEEEecCCCCceEeeccCCCCCC
Confidence             6999999988766433 2334455554444444

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.32  E-value=1  Score=48.96  Aligned_cols=78  Identities=9%  Similarity=0.063  Sum_probs=51.6

Q ss_pred             eEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceEEecccCCce--EEEEEeCCCC-EEE
Q 047260          696 LVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTIAAHENII--SALAQSPVTG-MVA  772 (784)
Q Consensus       696 ~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~~~h~~~V--~slafspdg~-~La  772 (784)
                      .|.-+|+.+++.+..+..+. ++..-..+..+..+++++.||.++.||.++++.+-...-...+  .-+.|..+|+ ||+
T Consensus       467 ~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv~  545 (582)
T d1flga_         467 SLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLG  545 (582)
T ss_dssp             EEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             eEEEEcCCCCcEEeecCCCC-CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEE
Confidence            57788999998888776542 2232234456778889999999999999999998322221111  1245666776 555


Q ss_pred             EE
Q 047260          773 SA  774 (784)
Q Consensus       773 Sg  774 (784)
                      ..
T Consensus       546 i~  547 (582)
T d1flga_         546 VT  547 (582)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.29  E-value=0.28  Score=50.19  Aligned_cols=192  Identities=14%  Similarity=0.198  Sum_probs=117.9

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEcc------CCCEEEEEeC--C--CeEEEEcCCCCcceeee
Q 047260          518 DGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRP------NSSQLATASV--D--KSVRLWDAANPNFCSQA  587 (784)
Q Consensus       518 dg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fsp------dg~~Latgs~--D--g~I~IWdl~~~~~~~~~  587 (784)
                      +..+++....++-|++||+. |+.+..+.  .+.+..|..-.      ...-|++++.  +  .+|.+|.+.........
T Consensus        39 ~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~  115 (353)
T d1h6la_          39 QNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS  115 (353)
T ss_dssp             GGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEE
T ss_pred             CccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccc
Confidence            44566666677679999996 77777764  35666655442      2223455542  2  36888887643322222


Q ss_pred             ccCC-------CCCeEEEEE--cCC-CCcEEEEEeCCCeEEEEeCC---CC----eeEEeec--CCeeEEEEecCCCEEE
Q 047260          588 YTGH-------SSPIMSLDF--HPK-KTDLFCFCDNDNEIQYWSIN---PF----LCTHITK--GGTAQVRFQPRIGQLL  648 (784)
Q Consensus       588 ~~~h-------~~~V~sl~~--sp~-~~~ll~sgs~dg~I~iwDl~---~~----~~~~~~~--~~v~~v~fsp~~~~Ll  648 (784)
                      +...       ...+..+|+  ++. +...+++...+|.+..|.+.   ..    +.++.+.  ..+..|.+....+.|+
T Consensus       116 ~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~Ly  195 (353)
T d1h6la_         116 ITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSLY  195 (353)
T ss_dssp             CSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEEE
T ss_pred             ccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCcEE
Confidence            2211       124666776  554 44456677789999888763   22    2333333  5678899999999999


Q ss_pred             EEECCCcEEEEECCC-----CeEEEEEeC--CCCCEEEEEEcC--CCC-EEEEEeC--CeEEEEeCCC-CceEEEec
Q 047260          649 AAASDKVVSIFDIET-----DRQTHSLQG--HAELVNYICWDT--NGD-YLASVSQ--NLVKVWSMAS-GECIQELS  712 (784)
Q Consensus       649 ~~s~Dg~I~IwDl~t-----~~~i~~l~~--h~~~V~sl~~sp--dg~-~Lasgsd--d~I~IwDl~t-~~~i~~l~  712 (784)
                      ++-.+..|..++.+.     ...+....+  ....+..|+.-.  ++. ||++.+.  ++..|||... .+.+..|.
T Consensus       196 isEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F~  272 (353)
T d1h6la_         196 IAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADFQ  272 (353)
T ss_dssp             EEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred             EecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccceEE
Confidence            999988777777642     223333322  345677777543  333 6766663  4999999877 36666654

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.20  E-value=0.058  Score=55.33  Aligned_cols=100  Identities=11%  Similarity=0.126  Sum_probs=61.7

Q ss_pred             CCEEEEEEcCCCCEEEEEe----------------CCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECC-C
Q 047260          675 ELVNYICWDTNGDYLASVS----------------QNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGI-S  737 (784)
Q Consensus       675 ~~V~sl~~spdg~~Lasgs----------------dd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~d-g  737 (784)
                      ...+.|++..++.++++-.                .....+|....++.. .....-...+.++++|++++|+++... +
T Consensus       150 ~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~-~~~~~l~~pNGI~~s~d~~~lyVa~t~~~  228 (340)
T d1v04a_         150 PSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVR-VVAEGFDFANGINISPDGKYVYIAELLAH  228 (340)
T ss_dssp             SSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEE-EEEEEESSEEEEEECTTSSEEEEEEGGGT
T ss_pred             cCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceE-EEcCCCCccceeEECCCCCEEEEEeCCCC
Confidence            4578888888888888732                123344444444332 222223456899999999988777664 6


Q ss_pred             eEEEEECCCCceE---EecccCCceEEEEEeCCCCEEEEEE
Q 047260          738 SLELWNMAENKSM---TIAAHENIISALAQSPVTGMVASAS  775 (784)
Q Consensus       738 ~I~Iwdl~~~~~~---~~~~h~~~V~slafspdg~~LaSgs  775 (784)
                      .|++|++......   ....-.+.+-.+.+.+++..+.+++
T Consensus       229 ~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         229 KIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             EEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred             eEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence            8999998765433   2223455667788876444444444

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.99  E-value=0.63  Score=43.44  Aligned_cols=219  Identities=7%  Similarity=-0.039  Sum_probs=114.6

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEE-ccCCCEEEEE------eCCCeEEEEcCCCCcceeeeccC
Q 047260          518 DGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRF-RPNSSQLATA------SVDKSVRLWDAANPNFCSQAYTG  590 (784)
Q Consensus       518 dg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~f-spdg~~Latg------s~Dg~I~IWdl~~~~~~~~~~~~  590 (784)
                      +.++|+++...|.|.++-+..++.+..-+   .+|....- .+.-.++..+      -.-..|.+-++..+......-..
T Consensus        25 ~d~ll~~~~seG~vni~~l~g~~~vkLtk---ePI~~~~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i~sp  101 (313)
T d2hu7a1          25 GDKLLVVGFSEGSVNAYLYDGGETVKLNR---EPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAV  101 (313)
T ss_dssp             TTEEEEEEEETTEEEEEEESSSSCEECCS---SCCSEECEECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEECTTS
T ss_pred             CCcEEEEEeccceEEEEEEeCCEEEEEec---ccccCcCCCccCcceEEEEeehhcCcceeeEEEEccCCCCeeeEecCC
Confidence            34578888899999999988777655433   23322211 1111122221      11223555555533322222111


Q ss_pred             CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeecCCeeEEEEecCCCEEEEEEC--CCc--EEEEECCCCeE
Q 047260          591 HSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKGGTAQVRFQPRIGQLLAAAS--DKV--VSIFDIETDRQ  666 (784)
Q Consensus       591 h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~~~v~~v~fsp~~~~Ll~~s~--Dg~--I~IwDl~t~~~  666 (784)
                      ..-.|.++++  ++..++++|+....+.+|-++.++......-+...+.-.-.+++++-.+-  .+.  +.+-|+.++ .
T Consensus       102 k~vRI~S~~y--ddk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG-~  178 (313)
T d2hu7a1         102 KPMRILSGVD--TGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSG-G  178 (313)
T ss_dssp             CSBEEEEEEE--CSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTE-E
T ss_pred             ceEEEEEeee--cCceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccC-C
Confidence            1133445544  56678899998888888888876655443322222221222222221111  111  222233222 2


Q ss_pred             EEEEeCCCCCEEEEEEcCCCCEEEEEe----CCeEEEEeCCCCceEEE-ecc------CCCceEEEEEecCCCEEEEEEC
Q 047260          667 THSLQGHAELVNYICWDTNGDYLASVS----QNLVKVWSMASGECIQE-LSS------NGNQFHSCVFHPSYSTLLVVGG  735 (784)
Q Consensus       667 i~~l~~h~~~V~sl~~spdg~~Lasgs----dd~I~IwDl~t~~~i~~-l~~------~~~~I~sl~fspdg~~L~s~s~  735 (784)
                      ++.+....+.++.....++.+. ++.-    +....-+|+++++.-.. +..      ....|.-+-+.|+++.++.+-.
T Consensus       179 lri~tpkeGS~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iiakr  257 (313)
T d2hu7a1         179 LRVFDSGEGSFSSASISPGMKV-TAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARR  257 (313)
T ss_dssp             EEEECCSSEEEEEEEECTTSCE-EEEEEESSCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEEECTTSCEEEEEEE
T ss_pred             EEEecCCCCcccceeEccCcee-eeccCCCCceEEEEEecccCceeeeecCcccceeecceEEEeeeeCCCCcEEEEEec
Confidence            2333344556666667776666 4333    22444668887754321 211      1234555679999999899999


Q ss_pred             CCeEEEEE
Q 047260          736 ISSLELWN  743 (784)
Q Consensus       736 dg~I~Iwd  743 (784)
                      ||.-.+|.
T Consensus       258 dG~s~lF~  265 (313)
T d2hu7a1         258 EGRSAVFI  265 (313)
T ss_dssp             TTEEEEEE
T ss_pred             CCchheee
Confidence            99888886

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.47  E-value=3.5  Score=43.02  Aligned_cols=55  Identities=13%  Similarity=0.197  Sum_probs=39.9

Q ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeee--cC------CCCCCeEEEEEccC
Q 047260          506 RNSKVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTEST--PE------DHKSVVTDVRFRPN  560 (784)
Q Consensus       506 H~~~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~--l~------~h~~~It~i~fspd  560 (784)
                      .-...++|+|.|||++|++--.+|+|++++..++.....  +.      .-......|+|+|+
T Consensus        25 ~L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          25 NLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            345688999999999888765679999999877654321  11      12356789999984

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=94.32  E-value=3  Score=41.75  Aligned_cols=185  Identities=11%  Similarity=0.122  Sum_probs=107.4

Q ss_pred             ceEEEEEcCCCCEEEEEeC------------CCeEEEEECCCCceee-ecC--CC-----CCCeEEEEE--ccCCC-EEE
Q 047260          509 KVTCCHFSSDGKLLASSGH------------DRKVVLWNMDTLQTES-TPE--DH-----KSVVTDVRF--RPNSS-QLA  565 (784)
Q Consensus       509 ~V~~l~fspdg~~Lasgs~------------Dg~I~IWd~~t~~~~~-~l~--~h-----~~~It~i~f--spdg~-~La  565 (784)
                      ..-+|+..|||..+++++.            .|.|.++|+++.+... .+.  +.     .-....|.+  .+++. +|+
T Consensus        36 G~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~  115 (340)
T d1v04a_          36 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  115 (340)
T ss_dssp             CCCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEE
Confidence            3456788899887766542            4899999987543221 111  11     012234443  34555 355


Q ss_pred             EEe---CCCeEEEEcCCCCcceee---ecc-CCCCCeEEEEEcCCCCcEEEEEeC-----------------CCeEEEEe
Q 047260          566 TAS---VDKSVRLWDAANPNFCSQ---AYT-GHSSPIMSLDFHPKKTDLFCFCDN-----------------DNEIQYWS  621 (784)
Q Consensus       566 tgs---~Dg~I~IWdl~~~~~~~~---~~~-~h~~~V~sl~~sp~~~~ll~sgs~-----------------dg~I~iwD  621 (784)
                      +..   ...+|.+|++........   .+. .......+|++..++. ++++-+.                 .+.|..||
T Consensus       116 vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~-fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~  194 (340)
T d1v04a_         116 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS  194 (340)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCCSHHHHHHHHHTTCCCEEEEEEC
T ss_pred             EEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCC-EEEecCccCcChhhhhhhHhhcCCceeEEEEc
Confidence            543   356788888765432211   111 2234577888887775 5555321                 23455555


Q ss_pred             CCCCeeEEeecCCeeEEEEecCCCEEEEEEC-CCcEEEEECCCCeEEEE--EeCCCCCEEEEEEcC-CCCEEEEEeC
Q 047260          622 INPFLCTHITKGGTAQVRFQPRIGQLLAAAS-DKVVSIFDIETDRQTHS--LQGHAELVNYICWDT-NGDYLASVSQ  694 (784)
Q Consensus       622 l~~~~~~~~~~~~v~~v~fsp~~~~Ll~~s~-Dg~I~IwDl~t~~~i~~--l~~h~~~V~sl~~sp-dg~~Lasgsd  694 (784)
                      ....+.+..--...+.|+++|++++|+++.. .+.|++|++.....+..  ...-....-.+.+++ +|.+.+++..
T Consensus       195 ~~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~~p  271 (340)
T d1v04a_         195 PNDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCHP  271 (340)
T ss_dssp             SSCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEES
T ss_pred             CCceEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEECC
Confidence            5444433333356788999999999888877 78999999875432221  112345567788876 5666666543

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.03  E-value=0.77  Score=47.21  Aligned_cols=177  Identities=13%  Similarity=0.111  Sum_probs=100.4

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEECCCC---------ceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCC
Q 047260          509 KVTCCHFSSDGKLLASSGHDRKVVLWNMDTL---------QTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAA  579 (784)
Q Consensus       509 ~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~---------~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~  579 (784)
                      ...-+++++...+|+.|+.++ ++|..++..         .........-..|..++|+.+  .|+.. .++.+..++..
T Consensus        38 ~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~d--~l~v~-~~~~l~~~~~~  113 (381)
T d1xipa_          38 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHGD--QVLVS-TRNALYSLDLE  113 (381)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEETT--EEEEE-ESSEEEEEESS
T ss_pred             ccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeCC--EEEEE-eCCCEEEEEee
Confidence            356788888777888888775 667764311         000111111135888999744  45554 45668888876


Q ss_pred             CCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEe--------ecCCeeEEEEecCCCEEEEEE
Q 047260          580 NPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHI--------TKGGTAQVRFQPRIGQLLAAA  651 (784)
Q Consensus       580 ~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~--------~~~~v~~v~fsp~~~~Ll~~s  651 (784)
                      .-.. .........++..+.++|.   .++.+..++.+.++++........        ..+.+.+++|++.+..++++.
T Consensus       114 ~l~~-~~~~~~~~~~~~~~~~~p~---~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~  189 (381)
T d1xipa_         114 ELSE-FRTVTSFEKPVFQLKNVNN---TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWR  189 (381)
T ss_dssp             STTC-EEEEEECSSCEEEEEECSS---EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEEE
T ss_pred             cccc-ccccccccccccceecCCc---eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEEeC
Confidence            5332 2222233567888888875   456677799999999987643322        235566666766666666553


Q ss_pred             CCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEEe
Q 047260          652 SDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVS  693 (784)
Q Consensus       652 ~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasgs  693 (784)
                      .++.-.--++.....+.........|.+|.|-.+..++++.+
T Consensus       190 g~~~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy~  231 (381)
T d1xipa_         190 NGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG  231 (381)
T ss_dssp             TTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             CCceeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEEC
Confidence            221111111111110000011345788999988777777653

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.89  E-value=1.2  Score=42.65  Aligned_cols=213  Identities=7%  Similarity=-0.060  Sum_probs=96.1

Q ss_pred             eEEEEECCCCceee--ecCCCCCCeEEEEEccCCCEEEEEeC---------CCeEEEEcCCCCcceeeeccCC-CCCeEE
Q 047260          530 KVVLWNMDTLQTES--TPEDHKSVVTDVRFRPNSSQLATASV---------DKSVRLWDAANPNFCSQAYTGH-SSPIMS  597 (784)
Q Consensus       530 ~I~IWd~~t~~~~~--~l~~h~~~It~i~fspdg~~Latgs~---------Dg~I~IWdl~~~~~~~~~~~~h-~~~V~s  597 (784)
                      .|.+||+++.+-..  .+......-..+.+  ++.+++.|+.         -..+.+||..+........... ...-.+
T Consensus        20 ~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~~~   97 (288)
T d1zgka1          20 YLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGV   97 (288)
T ss_dssp             CEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEE
T ss_pred             eEEEEECCCCeEEECCCCCCccceeEEEEE--CCEEEEEeCcccCCCCccccchhhhcccccccccccccccceecceec
Confidence            48899998764322  23222222222222  4556666553         1356788887654321111010 111122


Q ss_pred             EEEcCCCCcEEEEEeCCC-----eEEEEeCCCCeeEEeecCC----eeEEEEecCCCEEEEEEC-----CCcEEEEECCC
Q 047260          598 LDFHPKKTDLFCFCDNDN-----EIQYWSINPFLCTHITKGG----TAQVRFQPRIGQLLAAAS-----DKVVSIFDIET  663 (784)
Q Consensus       598 l~~sp~~~~ll~sgs~dg-----~I~iwDl~~~~~~~~~~~~----v~~v~fsp~~~~Ll~~s~-----Dg~I~IwDl~t  663 (784)
                      +.+  ++ .+++.++.++     .+..+|..+..........    -..+... ....++.++.     ...+..||..+
T Consensus        98 ~~~--~~-~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~~~GG~~~~~~~~~~~~~d~~~  173 (288)
T d1zgka1          98 GVI--DG-HIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAVGGFDGTNRLNSAECYYPER  173 (288)
T ss_dssp             EEE--TT-EEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTT
T ss_pred             ccc--ce-eeEEecceecccccceeeeeccccCccccccccccccccceeeee-eecceEecCcccccccceEEEeeccc
Confidence            222  33 3555444333     3444666554433222111    1122222 3344444443     24578888877


Q ss_pred             CeEEEEEeC-CCCCEEEEEEcCCCCEEEEEe-C-----CeEEEEeCCCCceEEEeccCCCce-EEEEEecCCCEEEEEEC
Q 047260          664 DRQTHSLQG-HAELVNYICWDTNGDYLASVS-Q-----NLVKVWSMASGECIQELSSNGNQF-HSCVFHPSYSTLLVVGG  735 (784)
Q Consensus       664 ~~~i~~l~~-h~~~V~sl~~spdg~~Lasgs-d-----d~I~IwDl~t~~~i~~l~~~~~~I-~sl~fspdg~~L~s~s~  735 (784)
                      .+....-.. ......+++.. ++.+++.++ +     +.+.++|..+.+....-....... .+++. .+++.++.|+.
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~-~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~-~~~~l~v~GG~  251 (288)
T d1zgka1         174 NEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV-HQGRIYVLGGY  251 (288)
T ss_dssp             TEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCB
T ss_pred             cccccccccccccccccccce-eeeEEEecCccccccccceeeeeecceeeecccCccCcccceEEEE-ECCEEEEEecC
Confidence            653322111 11111223332 344444443 2     256788887765433222222222 23333 35666777665


Q ss_pred             CC-----eEEEEECCCCceE
Q 047260          736 IS-----SLELWNMAENKSM  750 (784)
Q Consensus       736 dg-----~I~Iwdl~~~~~~  750 (784)
                      ++     .|.+||+.+++-.
T Consensus       252 ~~~~~~~~v~~yd~~~~~W~  271 (288)
T d1zgka1         252 DGHTFLDSVECYDPDTDTWS  271 (288)
T ss_dssp             CSSCBCCEEEEEETTTTEEE
T ss_pred             CCCeecceEEEEECCCCEEE
Confidence            43     5889999887644

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=93.52  E-value=3.5  Score=41.57  Aligned_cols=186  Identities=14%  Similarity=0.204  Sum_probs=107.0

Q ss_pred             EEEEcCC--CCcEEEEEeCCCeEEEEeCCCCeeEEeec-CCeeEEEEec----CC--CEEEEEEC--C--CcEEEEECCC
Q 047260          597 SLDFHPK--KTDLFCFCDNDNEIQYWSINPFLCTHITK-GGTAQVRFQP----RI--GQLLAAAS--D--KVVSIFDIET  663 (784)
Q Consensus       597 sl~~sp~--~~~ll~sgs~dg~I~iwDl~~~~~~~~~~-~~v~~v~fsp----~~--~~Ll~~s~--D--g~I~IwDl~t  663 (784)
                      +|-++|.  ...+++.....+-|++||+. ++.+.... +.+..|..-.    .+  ..+++++.  +  ..|.+|.+..
T Consensus        30 AIW~n~~~p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~  108 (353)
T d1h6la_          30 AIWLDPKNPQNSKLITTNKKSGLAVYSLE-GKMLHSYHTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDG  108 (353)
T ss_dssp             EEECCSSCGGGCEEEEEETTSCCEEEETT-CCEEEECCSSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEET
T ss_pred             eEEcCCCCcCccEEEEEcCcCCEEEEcCC-CcEEEecccCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecC
Confidence            4444553  23467777777779999997 44444444 6666655331    22  22455553  2  3577777642


Q ss_pred             -CeEEEEEeCC-------CCCEEEEEE--cC-CCCEEEEEe--CCeEEEEeCC---CC----ceEEEeccCCCceEEEEE
Q 047260          664 -DRQTHSLQGH-------AELVNYICW--DT-NGDYLASVS--QNLVKVWSMA---SG----ECIQELSSNGNQFHSCVF  723 (784)
Q Consensus       664 -~~~i~~l~~h-------~~~V~sl~~--sp-dg~~Lasgs--dd~I~IwDl~---t~----~~i~~l~~~~~~I~sl~f  723 (784)
                       ...+..+...       ...+..+|+  ++ +|.+.+...  ++.+..|.+.   .+    +.++++.. ...+..|++
T Consensus       109 ~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~-~~q~EGCVv  187 (353)
T d1h6la_         109 KNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKM-NSQTEGMAA  187 (353)
T ss_dssp             TTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEEC-SSCEEEEEE
T ss_pred             cccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCC-CCccceEEE
Confidence             2333333321       124667777  55 455544444  4477777653   33    34555643 467899999


Q ss_pred             ecCCCEEEEEECCCeEEEEECCCC-----ceEEec---ccCCceEEEEEeC--CCC-EEEEEE-CCCcEEEeC
Q 047260          724 HPSYSTLLVVGGISSLELWNMAEN-----KSMTIA---AHENIISALAQSP--VTG-MVASAS-HDSSVKLWK  784 (784)
Q Consensus       724 spdg~~L~s~s~dg~I~Iwdl~~~-----~~~~~~---~h~~~V~slafsp--dg~-~LaSgs-~DG~V~IWd  784 (784)
                      .+....|+++-.+..|..++....     ..+...   .....+..|+.-.  ++. +|++.+ .|++..|||
T Consensus       188 Dde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vyd  260 (353)
T d1h6la_         188 DDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYE  260 (353)
T ss_dssp             ETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEE
T ss_pred             eCCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEe
Confidence            999999999988877777765422     112111   2356677777543  333 555443 467777774

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.69  E-value=1.7  Score=44.47  Aligned_cols=97  Identities=9%  Similarity=0.092  Sum_probs=71.0

Q ss_pred             CEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceEEe---
Q 047260          676 LVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSMTI---  752 (784)
Q Consensus       676 ~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~~~---  752 (784)
                      .|..++|+.+  .|+...++.+..++...-........-..++..+.+.|.  .++....++.+.++++..++...+   
T Consensus        88 ~v~~vafs~d--~l~v~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~  163 (381)
T d1xipa_          88 DVIFVCFHGD--QVLVSTRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQN  163 (381)
T ss_dssp             TEEEEEEETT--EEEEEESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEES
T ss_pred             CeEEEEeeCC--EEEEEeCCCEEEEEeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCC
Confidence            5888899744  577777778888888775554444444566788888775  688888899999999998865422   


Q ss_pred             ---cccCCceEEEEEeCCCCEEEEEEC
Q 047260          753 ---AAHENIISALAQSPVTGMVASASH  776 (784)
Q Consensus       753 ---~~h~~~V~slafspdg~~LaSgs~  776 (784)
                         ..-.+.+.+++|++.+..++++..
T Consensus       164 v~~~~~~~~~~~v~ws~kgkq~v~~~g  190 (381)
T d1xipa_         164 VTSFDVTNSQLAVLLKDRSFQSFAWRN  190 (381)
T ss_dssp             EEEEEECSSEEEEEETTSCEEEEEEET
T ss_pred             cceEEecCCceEEEEeCCcEEEEEeCC
Confidence               123466899999998888887753

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.58  E-value=1.8  Score=41.24  Aligned_cols=202  Identities=8%  Similarity=-0.059  Sum_probs=89.0

Q ss_pred             eEEEEcCCCCcceee-eccCCCCCeEEEEEcCCCCcEEEEEeC---------CCeEEEEeCCCCeeEEeecCC---eeEE
Q 047260          572 SVRLWDAANPNFCSQ-AYTGHSSPIMSLDFHPKKTDLFCFCDN---------DNEIQYWSINPFLCTHITKGG---TAQV  638 (784)
Q Consensus       572 ~I~IWdl~~~~~~~~-~~~~h~~~V~sl~~sp~~~~ll~sgs~---------dg~I~iwDl~~~~~~~~~~~~---v~~v  638 (784)
                      .|.+||+++...... .+......-..+.+   +..+++.|+.         -..+.+||..+......-..+   ....
T Consensus        20 ~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~~   96 (288)
T d1zgka1          20 YLEAYNPSNGTWLRLADLQVPRSGLAGCVV---GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIG   96 (288)
T ss_dssp             CEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCE
T ss_pred             eEEEEECCCCeEEECCCCCCccceeEEEEE---CCEEEEEeCcccCCCCccccchhhhcccccccccccccccceeccee
Confidence            577888887653221 11111111122222   2346665542         236778888765554432211   1111


Q ss_pred             EEecCCCEEEEEECC-----CcEEEEECCCCeEEEEEeCCCC-CEEEEEEcCCCCEEEEEe-C-----CeEEEEeCCCCc
Q 047260          639 RFQPRIGQLLAAASD-----KVVSIFDIETDRQTHSLQGHAE-LVNYICWDTNGDYLASVS-Q-----NLVKVWSMASGE  706 (784)
Q Consensus       639 ~fsp~~~~Ll~~s~D-----g~I~IwDl~t~~~i~~l~~h~~-~V~sl~~spdg~~Lasgs-d-----d~I~IwDl~t~~  706 (784)
                      +...++..++.++.+     ..+..+|..+......-..... .-.++... ++.+++.++ +     ..+..||..+.+
T Consensus        97 ~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~~~GG~~~~~~~~~~~~~d~~~~~  175 (288)
T d1zgka1          97 VGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAVGGFDGTNRLNSAECYYPERNE  175 (288)
T ss_dssp             EEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTE
T ss_pred             ccccceeeEEecceecccccceeeeeccccCccccccccccccccceeeee-eecceEecCcccccccceEEEeeccccc
Confidence            122244444444332     3355577666543221111110 11112222 334444443 1     267888887765


Q ss_pred             eEEEeccC-CCceEEEEEecCCCEEEEEECC-----CeEEEEECCCCceEEecccC-Cce-EEEEEeCCCCEEEEEECCC
Q 047260          707 CIQELSSN-GNQFHSCVFHPSYSTLLVVGGI-----SSLELWNMAENKSMTIAAHE-NII-SALAQSPVTGMVASASHDS  778 (784)
Q Consensus       707 ~i~~l~~~-~~~I~sl~fspdg~~L~s~s~d-----g~I~Iwdl~~~~~~~~~~h~-~~V-~slafspdg~~LaSgs~DG  778 (784)
                      ....-... .....++... .+..++.++.+     ..+.++|..+.+...+.... ... .+++ ..++++++.|+.++
T Consensus       176 ~~~~~~~~~~~~~~~~~~~-~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~-~~~~~l~v~GG~~~  253 (288)
T d1zgka1         176 WRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGIT-VHQGRIYVLGGYDG  253 (288)
T ss_dssp             EEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEE-EETTEEEEECCBCS
T ss_pred             cccccccccccccccccce-eeeEEEecCccccccccceeeeeecceeeecccCccCcccceEEE-EECCEEEEEecCCC
Confidence            43221111 1111233333 34455555444     35788888887665443221 111 1222 23677888777655


Q ss_pred             c
Q 047260          779 S  779 (784)
Q Consensus       779 ~  779 (784)
                      .
T Consensus       254 ~  254 (288)
T d1zgka1         254 H  254 (288)
T ss_dssp             S
T ss_pred             C
Confidence            3

>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
superfamily: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
family: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
domain: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.45  E-value=0.032  Score=43.52  Aligned_cols=32  Identities=19%  Similarity=0.303  Sum_probs=28.6

Q ss_pred             HhHHHHHHHHhhcCChHHHHHHHHHhcCCCCC
Q 047260           10 KMLDVYIHDYFLKRKLHASAKAFMTEGKVATD   41 (784)
Q Consensus        10 ~~l~~yiydy~~k~~~~~~a~~~~~e~~~~~~   41 (784)
                      +=||.-|++||..+|+.++|.+|.+|++++.+
T Consensus         8 eeL~kaI~~Yl~~~~~~~~~~~l~~e~~l~~~   39 (76)
T d1uuja_           8 DELNRAIADYLRSNGYEEAYSVFKKEAELDMN   39 (76)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHHHHHHCCcHHHHHHHHHHHCCCCC
Confidence            45899999999999999999999999987633

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=91.34  E-value=3.1  Score=39.91  Aligned_cols=235  Identities=15%  Similarity=0.061  Sum_probs=111.3

Q ss_pred             eEEEEECCC-CceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeeccCCCCCeEEEEEcCCCCcEE
Q 047260          530 KVVLWNMDT-LQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAYTGHSSPIMSLDFHPKKTDLF  608 (784)
Q Consensus       530 ~I~IWd~~t-~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll  608 (784)
                      +|+.|--.. +............|..|+--  ....+... ||.|..|-......+-. -......|..|..-.  .+.+
T Consensus         5 sv~~WG~~~~~~~~~~~~~~~~~i~~va~G--~~h~~al~-dG~v~~wG~N~~GQlG~-~~~~~~~v~~v~~G~--~~~~   78 (273)
T d1jtdb_           5 SVVAWGGNNDWGEATVPAEAQSGVDAIAGG--YFHGLALK-GGKVLGWGANLNGQLTM-PAATQSGVDAIAAGN--YHSL   78 (273)
T ss_dssp             EEEEESSCCSSSTTCCCGGGSSSEEEEEEC--SSEEEEEE-TTEEEEEECCTTSTTSC-CGGGGSCCCEEEECS--SEEE
T ss_pred             EEEEECCCCCCCceeccccCCCCcEEEEcc--CCEEEEEE-CCEEEEEeCCCCCceee-eecccccceEEecCC--Ccee
Confidence            577775331 11111122234568888763  22333334 89999997665432211 111223455555422  2223


Q ss_pred             EEEeCCCeEEEEeCCCCeeE---EeecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCC
Q 047260          609 CFCDNDNEIQYWSINPFLCT---HITKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTN  685 (784)
Q Consensus       609 ~sgs~dg~I~iwDl~~~~~~---~~~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spd  685 (784)
                      + - .|+.+..|.....-..   ......+..+.....  ..+ ...|+.+..|.................|..++-  .
T Consensus        79 a-l-~dg~v~~wG~~~~gq~~~~~~~~~~~~~i~~~~~--~~~-~~~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~--~  151 (273)
T d1jtdb_          79 A-L-KDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAW--ASY-ALKDGKVIAWGDDSDGQTTVPAEAQSGVTALDG--G  151 (273)
T ss_dssp             E-E-ETTEEEEEECCTTSTTCCCGGGGSSCCEEEEETT--EEE-EEETTEEEEEECCTTSTTSCCGGGGSSEEEEEE--C
T ss_pred             e-e-eeeeeeccCCCcceeeccccccccceeEEeeecc--ccc-ccccccceecccCCCCceeeeccCCceEEEEec--c
Confidence            3 2 3899999976532111   111233444443322  222 234788888865432211111112234444433  2


Q ss_pred             CCEEEEEeCCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECCCCceE-EecccCCceEEEEE
Q 047260          686 GDYLASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMAENKSM-TIAAHENIISALAQ  764 (784)
Q Consensus       686 g~~Lasgsdd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~~~~~~-~~~~h~~~V~slaf  764 (784)
                      ...++...++.++.|-......+.........|..++....  +.++.. ||.|+.|=....-.+ ........|..|+-
T Consensus       152 ~~~~~~~~~g~~~~~G~~~~g~~~~~~~~~~~v~~Is~G~~--h~~~l~-dG~v~~WG~n~~Gql~~~~~~~~~v~~I~~  228 (273)
T d1jtdb_         152 VYTALAVKNGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIF--HSLALK-DGKVIAWGDNRYKQTTVPTEALSGVSAIAS  228 (273)
T ss_dssp             SSEEEEEETTEEEEEECCTTSTTSCCGGGSSSEEEEEECSS--EEEEEE-TTEEEEEECCTTSTTCCCGGGGSSCCEEEE
T ss_pred             ceeeeeecccceeEeecccCCcccccccccCCccceeccce--eeEEEe-cCcEEEcCCCCCCccCCCccCCCCcEEEEe
Confidence            33445555778888866443221111122345666654433  333334 789999965432222 22223345667764


Q ss_pred             eCCCCEEEEEECCCcEEEe
Q 047260          765 SPVTGMVASASHDSSVKLW  783 (784)
Q Consensus       765 spdg~~LaSgs~DG~V~IW  783 (784)
                      .. ...++.  .||.|..|
T Consensus       229 G~-~~~~~l--~~g~v~~W  244 (273)
T d1jtdb_         229 GE-WYSLAL--KNGKVIAW  244 (273)
T ss_dssp             CS-SCEEEE--ETTEEEEE
T ss_pred             Cc-ceEEEE--ECCEEEEE
Confidence            43 333443  37899988

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=90.66  E-value=2.9  Score=40.10  Aligned_cols=218  Identities=12%  Similarity=0.014  Sum_probs=100.7

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEEEEcCCCCcceeeec
Q 047260          509 KVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTESTPEDHKSVVTDVRFRPNSSQLATASVDKSVRLWDAANPNFCSQAY  588 (784)
Q Consensus       509 ~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~IWdl~~~~~~~~~~  588 (784)
                      .|..|+--  ....+.-. ||.|..|-....-.+-.-......|..|+.-. ...++  -.|+.+..|............
T Consensus        27 ~i~~va~G--~~h~~al~-dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~G~-~~~~a--l~dg~v~~wG~~~~gq~~~~~  100 (273)
T d1jtdb_          27 GVDAIAGG--YFHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGN-YHSLA--LKDGEVIAWGGNEDGQTTVPA  100 (273)
T ss_dssp             SEEEEEEC--SSEEEEEE-TTEEEEEECCTTSTTSCCGGGGSCCCEEEECS-SEEEE--EETTEEEEEECCTTSTTCCCG
T ss_pred             CcEEEEcc--CCEEEEEE-CCEEEEEeCCCCCceeeeecccccceEEecCC-Cceee--eeeeeeeccCCCcceeecccc
Confidence            46666552  22223223 78999997664332222222234455555422 22223  248999999765432111111


Q ss_pred             cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEe---ecCCeeEEEEecCCCEEEEEECCCcEEEEECCCCe
Q 047260          589 TGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHI---TKGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDR  665 (784)
Q Consensus       589 ~~h~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~---~~~~v~~v~fsp~~~~Ll~~s~Dg~I~IwDl~t~~  665 (784)
                       .....+..+.....   ..+.. .|+.+..|..........   ....+..+.-   +.+.++...++.++.|-.....
T Consensus       101 -~~~~~~~~i~~~~~---~~~~~-~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~~~~g~~~~~G~~~~g  172 (273)
T d1jtdb_         101 -EARSGVDAIAAGAW---ASYAL-KDGKVIAWGDDSDGQTTVPAEAQSGVTALDG---GVYTALAVKNGGVIAWGDNYFG  172 (273)
T ss_dssp             -GGGSSCCEEEEETT---EEEEE-ETTEEEEEECCTTSTTSCCGGGGSSEEEEEE---CSSEEEEEETTEEEEEECCTTS
T ss_pred             -ccccceeEEeeecc---ccccc-ccccceecccCCCCceeeeccCCceEEEEec---cceeeeeecccceeEeecccCC
Confidence             11223444444322   22222 488899997543221111   1123333322   2223334457888888654432


Q ss_pred             EEEEEeCCCCCEEEEEEcCCCCEEEEEeCCeEEEEeCCCCceEEEeccCCCceEEEEEecCCCEEEEEECCCeEEEEECC
Q 047260          666 QTHSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSMASGECIQELSSNGNQFHSCVFHPSYSTLLVVGGISSLELWNMA  745 (784)
Q Consensus       666 ~i~~l~~h~~~V~sl~~spdg~~Lasgsdd~I~IwDl~t~~~i~~l~~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~  745 (784)
                      ...........|..|+....  +.+.-.++.|+.|=....-.+..-......|..|+-.... .++ . .||.|..|-..
T Consensus       173 ~~~~~~~~~~~v~~Is~G~~--h~~~l~dG~v~~WG~n~~Gql~~~~~~~~~v~~I~~G~~~-~~~-l-~~g~v~~WG~~  247 (273)
T d1jtdb_         173 QTTVPAEAQSGVDDVAGGIF--HSLALKDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWY-SLA-L-KNGKVIAWGSS  247 (273)
T ss_dssp             TTSCCGGGSSSEEEEEECSS--EEEEEETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSC-EEE-E-ETTEEEEESTT
T ss_pred             cccccccccCCccceeccce--eeEEEecCcEEEcCCCCCCccCCCccCCCCcEEEEeCcce-EEE-E-ECCEEEEECCC
Confidence            21111123456777765433  3333347788888653321111111112345555543332 233 3 37999999543

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=87.56  E-value=12  Score=38.47  Aligned_cols=102  Identities=8%  Similarity=0.126  Sum_probs=60.1

Q ss_pred             CCCeEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCeeEEeec-----------CCeeEEEEecC---CCEEEEEEC-----
Q 047260          592 SSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITK-----------GGTAQVRFQPR---IGQLLAAAS-----  652 (784)
Q Consensus       592 ~~~V~sl~~sp~~~~ll~sgs~dg~I~iwDl~~~~~~~~~~-----------~~v~~v~fsp~---~~~Ll~~s~-----  652 (784)
                      -...++|+|.|+++ ++++--..|.|++++..+........           +....|+|+|+   ..++++...     
T Consensus        26 L~~P~~la~~pdg~-llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~  104 (450)
T d1crua_          26 LNKPHALLWGPDNQ-IWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK  104 (450)
T ss_dssp             CSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred             CCCceEEEEeCCCe-EEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCC
Confidence            45678999999987 66555457999999887654433221           34568999985   345555322     


Q ss_pred             --C----C--cEEEEECCCC--e-----EE-EEEe-CCCCCEEEEEEcCCCCEEEEEeC
Q 047260          653 --D----K--VVSIFDIETD--R-----QT-HSLQ-GHAELVNYICWDTNGDYLASVSQ  694 (784)
Q Consensus       653 --D----g--~I~IwDl~t~--~-----~i-~~l~-~h~~~V~sl~~spdg~~Lasgsd  694 (784)
                        +    .  .|..+.....  .     .+ ..+. ........|.|.|||.++++.++
T Consensus       105 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd  163 (450)
T d1crua_         105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (450)
T ss_dssp             C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             CcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecC
Confidence              1    1  1223332221  1     11 1111 12235678999999998887664

>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: GyrA/ParC C-terminal domain-like
family: GyrA/ParC C-terminal domain-like
domain: Topoisomerase IV subunit A, ParC, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=87.25  E-value=15  Score=36.09  Aligned_cols=228  Identities=9%  Similarity=0.079  Sum_probs=123.7

Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCc----eeeecCCCCCCeEEEEEccCCCEEEEEeCCCeEE---EEcCCCCcc-----e
Q 047260          517 SDGKLLASSGHDRKVVLWNMDTLQ----TESTPEDHKSVVTDVRFRPNSSQLATASVDKSVR---LWDAANPNF-----C  584 (784)
Q Consensus       517 pdg~~Lasgs~Dg~I~IWd~~t~~----~~~~l~~h~~~It~i~fspdg~~Latgs~Dg~I~---IWdl~~~~~-----~  584 (784)
                      |+...+++-+.+|.|+--++++.+    .-..++. .+.+..+........|+.-+..|.++   +|++.....     .
T Consensus         3 ~~E~v~v~lS~~GyiKR~~~~~~~~~~~~~~~~k~-~D~v~~~~~~~t~d~ll~fT~~Grvy~l~v~eiP~~~~~s~G~p   81 (323)
T d1wp5a_           3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKD-TDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH   81 (323)
T ss_dssp             SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCT-TCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred             CCCCEEEEEeCCCeEEEeeHHHhhhcCCCCCcccC-CceEEEEEEEcCCCEEEEEecCCEEEEEeeccCccccccccccc
Confidence            566778888999999866554211    1111222 33455544444444555556677654   566653221     1


Q ss_pred             ee-ecc-CCCCCeEEEEEcCC--CCcEEEEEeCCCeEEEEeCCCCee------EE--eec--CCeeEEEEecCCCEEEEE
Q 047260          585 SQ-AYT-GHSSPIMSLDFHPK--KTDLFCFCDNDNEIQYWSINPFLC------TH--ITK--GGTAQVRFQPRIGQLLAA  650 (784)
Q Consensus       585 ~~-~~~-~h~~~V~sl~~sp~--~~~ll~sgs~dg~I~iwDl~~~~~------~~--~~~--~~v~~v~fsp~~~~Ll~~  650 (784)
                      +. .+. .....|..+....+  ....++..+..|.++..++.....      ..  .+.  ..+..+.+......++.+
T Consensus        82 i~~ll~l~~~e~ii~~~~~~~~~~~~~l~~~Tk~G~iKr~~l~~f~~~~~~~g~~~i~L~~~D~l~~v~~~~~~~~i~l~  161 (323)
T d1wp5a_          82 IANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFLV  161 (323)
T ss_dssp             GGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEEEE
T ss_pred             ceeeecccCCcceEEEeeccccccceeEEEEeehhheeeccHHHhhhhhccchhhhccccccccccceeccCCCeEEEEE
Confidence            11 111 22334444433222  234667778899999998753211      11  111  355666677777889999


Q ss_pred             ECCCcEEEEECCCCe-------EEEEEeC-CCCCEE-EEEEcCCCCEEEEEe-CCeEEEEeCCC-------CceEEEec-
Q 047260          651 ASDKVVSIFDIETDR-------QTHSLQG-HAELVN-YICWDTNGDYLASVS-QNLVKVWSMAS-------GECIQELS-  712 (784)
Q Consensus       651 s~Dg~I~IwDl~t~~-------~i~~l~~-h~~~V~-sl~~spdg~~Lasgs-dd~I~IwDl~t-------~~~i~~l~-  712 (784)
                      +..|.+..|+...-.       -+.-+.- ..+.|. .....+++..|+..+ .+..+...+..       ++-+..+. 
T Consensus       162 t~~G~~lrf~~~~vr~~gr~a~GV~~ikL~~~D~vv~~~~~~~~~~~ll~~T~~G~gKr~~~~e~~~~~RggkGv~~~k~  241 (323)
T d1wp5a_         162 THNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILRE  241 (323)
T ss_dssp             ETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSCC
T ss_pred             EecceeeEeecccccccCcccccccccccccccccchhhhccccccceeeeeeeheeecccchhhccccccccccccccc
Confidence            999999999875321       1222221 233444 444555666666665 44666654422       22222222 


Q ss_pred             --cCCCceEEEEEecCCCEEEEEECCCeEEEEECC
Q 047260          713 --SNGNQFHSCVFHPSYSTLLVVGGISSLELWNMA  745 (784)
Q Consensus       713 --~~~~~I~sl~fspdg~~L~s~s~dg~I~Iwdl~  745 (784)
                        .....|..+....+...|+..+..|.+.-.++.
T Consensus       242 ~k~~~~~v~~~~~~~~~d~l~l~T~~g~~~r~~~~  276 (323)
T d1wp5a_         242 LKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVG  276 (323)
T ss_dssp             CSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGG
T ss_pred             cccccceeeeeEecCCCCEEEEEeCCCEEEEEEhh
Confidence              223445566666666678888888876655543

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=85.10  E-value=15  Score=33.99  Aligned_cols=179  Identities=11%  Similarity=0.129  Sum_probs=92.0

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeee--cCCC-------CCCeEEEEEcc-CCCEEEEEeC-CCeEEEEc
Q 047260          509 KVTCCHFSSDGKLLASSGHDRKVVLWNMDTLQTEST--PEDH-------KSVVTDVRFRP-NSSQLATASV-DKSVRLWD  577 (784)
Q Consensus       509 ~V~~l~fspdg~~Lasgs~Dg~I~IWd~~t~~~~~~--l~~h-------~~~It~i~fsp-dg~~Latgs~-Dg~I~IWd  577 (784)
                      +|.++++. |.+..++|+....+.+|-++.++....  +...       ..-|..+.|-. +..-|+++.. .|.++|++
T Consensus       105 RI~S~~yd-dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lri~t  183 (313)
T d2hu7a1         105 RILSGVDT-GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFD  183 (313)
T ss_dssp             EEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEEEEC
T ss_pred             EEEEeeec-CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCEEEec
Confidence            35566654 445777888888889998887665332  2221       12333333332 2233455544 56666666


Q ss_pred             CCCCcceeeeccCCCCCeEEEEEcCCCCcEEEEEeC---CCeEEEEeCCCCeeEEee----------cCCeeEEEEecCC
Q 047260          578 AANPNFCSQAYTGHSSPIMSLDFHPKKTDLFCFCDN---DNEIQYWSINPFLCTHIT----------KGGTAQVRFQPRI  644 (784)
Q Consensus       578 l~~~~~~~~~~~~h~~~V~sl~~sp~~~~ll~sgs~---dg~I~iwDl~~~~~~~~~----------~~~v~~v~fsp~~  644 (784)
                      ...+            .+....+.+... + +++-+   ......+|++..+..+.-          .-.+.-+-+.|++
T Consensus       184 pkeG------------S~~~ay~~~gnK-V-~sdyEt~gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~Pdd  249 (313)
T d2hu7a1         184 SGEG------------SFSSASISPGMK-V-TAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDG  249 (313)
T ss_dssp             CSSE------------EEEEEEECTTSC-E-EEEEEESSCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEEECTTS
T ss_pred             CCCC------------cccceeEccCce-e-eeccCCCCceEEEEEecccCceeeeecCcccceeecceEEEeeeeCCCC
Confidence            5543            344444444332 2 22221   122224477654433321          1234456689999


Q ss_pred             CEEEEEECCCcEEEEECCCCeEEEEEeCCCCCEEEEEEcCCCCEEEEE-eCC-eEEEEeCCCCceE
Q 047260          645 GQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASV-SQN-LVKVWSMASGECI  708 (784)
Q Consensus       645 ~~Ll~~s~Dg~I~IwDl~t~~~i~~l~~h~~~V~sl~~spdg~~Lasg-sdd-~I~IwDl~t~~~i  708 (784)
                      +.++++-.||.-.+|+  +++.+..   ..+.+..+..-. +++.++. +-. --+|..+.+++++
T Consensus       250 ~L~iiakrdG~s~lF~--nGk~in~---p~G~~~gat~i~-~~iyfshsSL~tP~kI~~~~~~~~~  309 (313)
T d2hu7a1         250 RLAVVARREGRSAVFI--DGERVEA---PQGNHGRVVLWR-GKLVTSHTSLSTPPRIVSLPSGEPL  309 (313)
T ss_dssp             CEEEEEEETTEEEEEE--TTEEECC---CSSEEEEEEEET-TEEEEEEEETTEEEEEEEETTCCEE
T ss_pred             cEEEEEecCCchheee--cceEecC---CCCcccceEEEC-CEEEEeecccCCCceeEEcCCCCcc
Confidence            9989999999999987  3444432   333333333222 2222222 222 4455555555543