Citrus Sinensis ID: 047285

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550--
Protein Sequence
MKSTIMSVSVAILFLELFVVAAMINISFCNGNSYVGCIDSEREALLKLKQDLIDPSNRLASWNTGDGDCCKWAGVFCSNITGHVLQLSLQNPFSYLGGDLREVKAGSNYERSKLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLGPHFPSWLHSQ
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHccccccccccccccccccccccccEEEccccccEEEEEccccccccccccHHHccccccccccccEEccccccccccccEEEccccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccHHHHcccccccEEccccccccccccHHHHHcccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccccccEEEcccccccccccHHHHccccccEEEcccccccccccccccccccccEEEcccccccEEcccccccccccccEEEccccccccccccccccccccccEEEccccccccccccHHHHccccccccccEEEcccccccccccHHHHccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHcccccccEEEccccEEEEEccccccccccccEEEccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccccccccccccccccccEEEEEEcccccEEEEEEcccccccccccHHHHHHHEccccccccccccHHHcccccccEEEccccccccccccHHHcccccccEEEEccccccccccHHHcccccccEEEEcccccccccccccccHHHcccccccEEEccccccccccccccccccccccEEEEEccccccccccHHHcccccccEEEEccccccccccccHHHHcccccccEEEcccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEEccccccccccHHHHcccccccEEEEcccccccccccHHHccccccEEEEEccccccccccHHHccccccccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHcccccccEEEcccccccccccHHHHccccccEEEEccccccccccHHcccc
Coil and Loop (DISEMBL)
MKSTIMSVSVAILFLELFVVAAMINISfcngnsyvgCIDSEREALLKLKQDlidpsnrlaswntgdgdcckwagVFCSNITGHVLQLSlqnpfsylggdlrevkagsnyersklggkvnpslvdlkhlihldlsgndfegiqipkylgSLENLRYLNlsgakfagmiplqlgnlsnlqyldlsgtflsnydlhvdslswlsglymleHLDLSQMNLSKASDWllvtnslpslkvlkltkcqlchfppllsanFSSLKALHLAINNFdnslfqygswvFGLRNLVFidlssnqfqgqipiglrnltslrhldlrfnyfnsttpgwlskfndlEFLSVAWNSLQGTIssvglenltsietldlsgnsklggkiptsFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLqfkslhtlelghnslfgplppalgelsslkkldlsnnmlngfiplslgklshleyldlsnnklnaslseiHFVNltkltwfsasgnslilkfnpnwvppfqletlqlrschlgphfpswlhsq
Flexible Loop (DISEMBL)
MKSTIMSVSVAILFLELFVVAAMINISFCNGNSYVGCIDSEREALLKLKQDLIDPSNRLASWNTGDGDCCKWAGVFCSNITGHVLQLSLQNPFSYLGGDLREVKAGSnyersklggkvnpslVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETldlsgnsklgGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLGPHFPSWLHSQ
Low Complexity Region (SEG)
MKSTIMSVSVAILFLELFVVAAMINISFCNGNSYVGCIDSEREALLKLKQDLIDPSNRLASWNTGDGDCCKWAGVFCSNITGHVLQLSLQNPFSYLGGDLREVKAGSNYERSKLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGElsslkkldlsnnmlnGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLGPHFPSWLHSQ
Disordered region (IsUnstruct)
****IMSVSVAILFLELFVVAAMINISFCNGNSYVGCIDSEREALLKLKQDLIDPSNRLASWNTGDGDCCKWAGVFCSNITGHVLQLSLQNPFSYLGGDLREVKAGSNYERSKLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLGPHFPSW****
Disordered Region (DISOPRED)
************LFLELFVVAAMINISFCN*******IDSEREALLKLKQDLIDPSNRLASWNTGDGDCCKWAGVFCSNITGHVLQLSLQNPFSYLGGDLREVKAGSNYERSKLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLGPHFPSWLHSQ
Disordered Region (DISEMBL)
MKSTIMSVSVAILFLELFVVAAMINISFCNGNSYVGCIDSEREALLKLKQDLIDPSNRLASWNTGDGDCCKWAGVFCSNITGHVLQLSLQNPFSYLGGDLREVKAGSNYERSKLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLGPHFPSWLHSQ
Disordered Region (DISPRO)
****IMSVSVAILFLELFVVAAMINISFCNGNSYVGCIDSEREALLKLKQDLIDPSNRLASWNTGDGDCCKWAGVFCSNITGHVLQLSLQNPFSYLGGDLREVKAGSNYERSKLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLGPHFP******
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKSTIMSVSVAILFLELFVVAAMINISFCNGNSYVGCIDSEREALLKLKQDLIDPSNRLASWNTGDGDCCKWAGVFCSNITGHVLQLSLQNPFSYLGGDLREVKAGSNYERSKLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLGPHFPSWLHSQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	552	2.2.26 [Sep-21-2011]
Q9LRT1	1016	Probably inactive leucine	no	no	0.831	0.451	0.319	4e-36
Q9C9H7	847	Receptor-like protein 12	no	no	0.856	0.558	0.294	5e-35
Q42371	976	LRR receptor-like serine/	no	no	0.844	0.477	0.293	7e-34
C0LGJ1	1106	Probable LRR receptor-lik	no	no	0.797	0.397	0.304	2e-32
Q9SGP2	996	Receptor-like protein kin	no	no	0.771	0.427	0.303	4e-32
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.813	0.407	0.296	8e-32
C0LGT6	1031	LRR receptor-like serine/	no	no	0.822	0.440	0.304	2e-31
Q6XAT2	967	LRR receptor-like serine/	no	no	0.764	0.436	0.267	5e-31
C0LGP4	1010	Probable LRR receptor-lik	no	no	0.793	0.433	0.296	8e-31
O82318	960	Probably inactive leucine	no	no	0.804	0.462	0.294	7e-30

>sp|Q9LRT1|Y3804_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 OS=Arabidopsis thaliana GN=At3g28040 PE=2 SV=1

 Score =  153 bits (386), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 157/492 (31%), Positives = 239/492 (48%), Gaps = 33/492 (6%)

Query: 13  LFLELFVVAAMINISFCNGNSYVGCIDSEREALLKLKQDLIDPSNRLASWNTGDGDCCKW 72
           LFL L +++++I     NG++    ++ +   L+  K DL DP + L SW   D   C W
Sbjct: 13  LFLTLTMMSSLI-----NGDTDSIQLNDDVLGLIVFKSDLNDPFSHLESWTEDDNTPCSW 67

Query: 73  AGVFCSNITGHVLQLSLQNPFSYLGGDLREVKAGSNYE-----RSKLGGKVNPSLVDLKH 127
           + V C+  T  V++LSL    +  G   R ++     +      +   G +N +L +  H
Sbjct: 68  SYVKCNPKTSRVIELSLDG-LALTGKINRGIQKLQRLKVLSLSNNNFTGNIN-ALSNNNH 125

Query: 128 LIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQL-GNLSNLQYLDLSGTF 186
           L  LDLS N+  G QIP  LGS+ +L++L+L+G  F+G +   L  N S+L+YL LS   
Sbjct: 126 LQKLDLSHNNLSG-QIPSSLGSITSLQHLDLTGNSFSGTLSDDLFNNCSSLRYLSLSHNH 184

Query: 187 LSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFP 246
           L          S L    +L  L+LS+   S    ++     L  L+ L L+   L    
Sbjct: 185 LEG-----QIPSTLFRCSVLNSLNLSRNRFSGNPSFVSGIWRLERLRALDLSSNSLSGSI 239

Query: 247 PLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTS 306
           PL   +  +LK L L  N F  +L    S +    +L  +DLSSN F G++P  L+ L S
Sbjct: 240 PLGILSLHNLKELQLQRNQFSGAL---PSDIGLCPHLNRVDLSSNHFSGELPRTLQKLKS 296

Query: 307 LRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSK 366
           L H D+  N  +   P W+     L  L  + N L G + S  + NL S++ L+LS N K
Sbjct: 297 LNHFDVSNNLLSGDFPPWIGDMTGLVHLDFSSNELTGKLPS-SISNLRSLKDLNLSEN-K 354

Query: 367 LGGKIPTSFARLCKLTSVDLSLIDLSQDFS-QVLDTFSSCGAYALESLDLSICQISGHLT 425
           L G++P S     +L  V L       DFS  + D F   G   L+ +D S   ++G + 
Sbjct: 355 LSGEVPESLESCKELMIVQLK----GNDFSGNIPDGFFDLG---LQEMDFSGNGLTGSIP 407

Query: 426 NQLLQ-FKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEY 484
               + F+SL  L+L HNSL G +P  +G    ++ L+LS N  N  +P  +  L +L  
Sbjct: 408 RGSSRLFESLIRLDLSHNSLTGSIPGEVGLFIHMRYLNLSWNHFNTRVPPEIEFLQNLTV 467

Query: 485 LDLSNNKLNASL 496
           LDL N+ L  S+
Sbjct: 468 LDLRNSALIGSV 479

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  149 bits (376), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 168/571 (29%), Positives = 253/571 (44%), Gaps = 98/571 (17%)

Query: 37  CIDSEREALLKLKQDLIDPSNRLASWN---------TGDGDCCKWAGVFCSNITGHVLQL 87
           C D +R+ALL+ + +   P N  ASW+             DCC W GV C++ +G V+ L
Sbjct: 34  CRDDQRDALLEFRGEF--PIN--ASWHIMNQWRGPWNKSTDCCLWNGVTCNDKSGQVISL 89

Query: 88  SLQNPF--SYLGGDLREVKAGSNYERSKLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPK 145
            + N F  +YL                    K N SL  L++L HLDL+  +  G +IP 
Sbjct: 90  DIPNTFLNNYL--------------------KTNSSLFKLQYLRHLDLTNCNLYG-EIPS 128

Query: 146 YLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYM 205
            LG+L +L  +NL   KF G IP  +GNL+ L++L L+   L+      +  S L  L  
Sbjct: 129 SLGNLSHLTLVNLYFNKFVGEIPASIGNLNQLRHLILANNVLTG-----EIPSSLGNLSR 183

Query: 206 LEHLDL-SQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAIN 264
           L +L+L S   + K  D +     L  L+ L L    L    P    N S+L  L L  N
Sbjct: 184 LVNLELFSNRLVGKIPDSI---GDLKQLRNLSLASNNLIGEIPSSLGNLSNLVHLVLTHN 240

Query: 265 NFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGW 324
                + +  + +  L  L  +   +N   G IPI   NLT L    L  N F ST P  
Sbjct: 241 QL---VGEVPASIGNLIELRVMSFENNSLSGNIPISFANLTKLSIFVLSSNNFTSTFPFD 297

Query: 325 LSKFNDLEFLSVAWNSLQG----------TISSVGLE-----------NLTSIETLD--L 361
           +S F++LE+  V++NS  G          ++ S+ L+           N +S   L   +
Sbjct: 298 MSIFHNLEYFDVSYNSFSGPFPKSLLLIPSLESIYLQENQFTGPIEFANTSSSTKLQDLI 357

Query: 362 SGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQIS 421
            G ++L G IP S +RL  L  +D+S  + +      +    +     L  LDLS   + 
Sbjct: 358 LGRNRLHGPIPESISRLLNLEELDISHNNFTGAIPPTISKLVN-----LLHLDLSKNNLE 412

Query: 422 GHLTNQLLQFKSL--------------------HTLELGHNSLFGPLPPALGELSSLKKL 461
           G +   L +  ++                      L+L  NS  GP+P  + +LSSL  L
Sbjct: 413 GEVPACLWRLNTMVLSHNSFSSFENTSQEEALIEELDLNSNSFQGPIPYMICKLSSLGFL 472

Query: 462 DLSNNMLNGFIPLSLGKLS-HLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILK 520
           DLSNN+ +G IP  +   S  ++ L+L +N  + +L +I F   T+L     S N L  K
Sbjct: 473 DLSNNLFSGSIPSCIRNFSGSIKELNLGDNNFSGTLPDI-FSKATELVSLDVSHNQLEGK 531

Query: 521 FNPNWVPPFQLETLQLRSCHLGPHFPSWLHS 551
           F  + +    LE + + S  +   FPSWL S
Sbjct: 532 FPKSLINCKALELVNVESNKIKDIFPSWLES 562

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q42371|ERECT_ARATH LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1

 Score =  145 bits (366), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 168/573 (29%), Positives = 255/573 (44%), Gaps = 107/573 (18%)

Query: 15  LELFVVAAMINISFCNGNSYVGCIDSEREA-LLKLKQDLIDPSNRLASWNTG-DGDCCKW 72
           + LF    ++   FC   S V  + SE  A LL++K+   D +N L  W T    D C W
Sbjct: 1   MALFRDIVLLGFLFCL--SLVATVTSEEGATLLEIKKSFKDVNNVLYDWTTSPSSDYCVW 58

Query: 73  AGVFCSNITGHVLQLSLQNPFSYLGGDLREVKAGSNYERSKLGGKVNPSLVDLKHLIHLD 132
            GV C N+T +V+ L+L         DL             L G+++P++ DLK L+ +D
Sbjct: 59  RGVSCENVTFNVVALNLS--------DL------------NLDGEISPAIGDLKSLLSID 98

Query: 133 LSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDL 192
           L GN   G QIP  +G   +L+ L+LS  + +G IP  +  L  L+ L      L N  L
Sbjct: 99  LRGNRLSG-QIPDEIGDCSSLQNLDLSFNELSGDIPFSISKLKQLEQL-----ILKNNQL 152

Query: 193 HVDSLSWLSGLYMLEHLDLSQMNLSKASDWLL---------------------------- 224
                S LS +  L+ LDL+Q  LS     L+                            
Sbjct: 153 IGPIPSTLSQIPNLKILDLAQNKLSGEIPRLIYWNEVLQYLGLRGNNLVGNISPDLCQLT 212

Query: 225 -----------VTNSLP-------SLKVLKLTKCQLCHFPPL----------------LS 250
                      +T S+P       + +VL L+  QL    P                 LS
Sbjct: 213 GLWYFDVRNNSLTGSIPETIGNCTAFQVLDLSYNQLTGEIPFDIGFLQVATLSLQGNQLS 272

Query: 251 ANFSSLKAL--HLAINNFDNSLFQYGSWVFGLRNLVFID---LSSNQFQGQIPIGLRNLT 305
               S+  L   LA+ +   +L   GS    L NL F +   L SN+  G IP  L N++
Sbjct: 273 GKIPSVIGLMQALAVLDLSGNLLS-GSIPPILGNLTFTEKLYLHSNKLTGSIPPELGNMS 331

Query: 306 SLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNS 365
            L +L+L  N+     P  L K  DL  L+VA N L+G I    L + T++ +L++ GN 
Sbjct: 332 KLHYLELNDNHLTGHIPPELGKLTDLFDLNVANNDLEGPIPD-HLSSCTNLNSLNVHGN- 389

Query: 366 KLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLT 425
           K  G IP +F +L  +T ++LS  ++       L    +     L++LDLS  +I+G + 
Sbjct: 390 KFSGTIPRAFQKLESMTYLNLSSNNIKGPIPVELSRIGN-----LDTLDLSNNKINGIIP 444

Query: 426 NQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYL 485
           + L   + L  + L  N + G +P   G L S+ ++DLSNN ++G IP  L +L ++  L
Sbjct: 445 SSLGDLEHLLKMNLSRNHITGVVPGDFGNLRSIMEIDLSNNDISGPIPEELNQLQNIILL 504

Query: 486 DLSNNKLNASLSEIHFVNLTKLTWFSASGNSLI 518
            L NN L  ++  +   N   LT  + S N+L+
Sbjct: 505 RLENNNLTGNVGSL--ANCLSLTVLNVSHNNLV 535

Receptor kinase that, together with ERL1 and ERL2, regulates aerial architecture, including inflorescence (e.g. shoot apical meristem-originating organ shape, elongation of the internode and pedicels, and adaxial-abaxial polarity), and stomatal patterning (e.g. density and clustering), probably by tuning cell division and expansion. Modulates plant transpiration efficiency by controlling stomatal density, leaf photosynthetic capacity, epidermal cell expansion, mesophyll cell proliferation and cell-cell contact. Probable major trait regulating canalization (maintenance of phenotype despite varying environment) in many aspect of the plant physiology (e.g. plant morphology, light-dependent leaves number, branch number, flowering time, phytate and mineral concentrations) by transducing microenvironmental variation into phenotypic differentiation (ecological amplifier). May maintain development integrity in heat stress conditions. Regulates cell wall composition and structure. Confers resistance to the pathogenic bacteria Ralstonia solanacearum and to the necrotrophic fungi Plectosphaerella cucumerina and Pythium irregulare, and required for callose deposition upon infection. Resistance to P.cucumerina seems cell wall-mediated.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGJ1|Y1743_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g74360 OS=Arabidopsis thaliana GN=At1g74360 PE=1 SV=1

 Score =  140 bits (354), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 151/496 (30%), Positives = 219/496 (44%), Gaps = 56/496 (11%)

Query: 38  IDSEREALLKLKQDL--IDPSNR--LASWNTGDGDC-CKWAGVFCSNITGHVLQLSLQNP 92
           +DS+RE LL LK  L   +P NR     W   + D  C+W G+ C+     V        
Sbjct: 38  LDSDREVLLSLKSYLESRNPQNRGLYTEWKMENQDVVCQWPGIICTPQRSRV-------- 89

Query: 93  FSYLGGDLREVKAGSNYERSKLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLEN 152
                        G N   S + G +  +   L  L +LDLS N  EG +IP  L    N
Sbjct: 90  ------------TGINLTDSTISGPLFKNFSALTELTYLDLSRNTIEG-EIPDDLSRCHN 136

Query: 153 LRYLNLSGAKFAGMIPLQLGNLSNLQYLDLS-----GTFLSNYDLHVDSLSWLSGLYMLE 207
           L++LNLS     G   L L  LSNL+ LDLS     G   S++ L  +SL          
Sbjct: 137 LKHLNLSHNILEG--ELSLPGLSNLEVLDLSLNRITGDIQSSFPLFCNSLVV-------- 186

Query: 208 HLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFD 267
             +LS  N +   D +   N   +LK +  +  +   F   +   F  L    +A N+  
Sbjct: 187 -ANLSTNNFTGRIDDIF--NGCRNLKYVDFSSNR---FSGEVWTGFGRLVEFSVADNHLS 240

Query: 268 NSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSK 327
            ++    S   G   L  +DLS N F G+ P  + N  +L  L+L  N F    P  +  
Sbjct: 241 GNI--SASMFRGNCTLQMLDLSGNAFGGEFPGQVSNCQNLNVLNLWGNKFTGNIPAEIGS 298

Query: 328 FNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLS 387
            + L+ L +  N+    I    L NLT++  LDLS N K GG I   F R  ++  + L 
Sbjct: 299 ISSLKGLYLGNNTFSRDIPET-LLNLTNLVFLDLSRN-KFGGDIQEIFGRFTQVKYLVLH 356

Query: 388 LIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGP 447
               +  +   +++ +      L  LDL     SG L  ++ Q +SL  L L +N+  G 
Sbjct: 357 ----ANSYVGGINSSNILKLPNLSRLDLGYNNFSGQLPTEISQIQSLKFLILAYNNFSGD 412

Query: 448 LPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKL 507
           +P   G +  L+ LDLS N L G IP S GKL+ L +L L+NN L+  +      N T L
Sbjct: 413 IPQEYGNMPGLQALDLSFNKLTGSIPASFGKLTSLLWLMLANNSLSGEIPR-EIGNCTSL 471

Query: 508 TWFSASGNSLILKFNP 523
            WF+ + N L  +F+P
Sbjct: 472 LWFNVANNQLSGRFHP 487

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SGP2|HSL1_ARATH Receptor-like protein kinase HSL1 OS=Arabidopsis thaliana GN=HSL1 PE=2 SV=1

 Score =  140 bits (352), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 152/501 (30%), Positives = 219/501 (43%), Gaps = 75/501 (14%)

Query: 45  LLKLKQDLIDPSNRLASWNTGDGDCCKWAGVFCSNITGHVLQLSLQN-----PF------ 93
           L ++K  L DP + L+SWN+ D   C+W+GV C+     V  + L +     PF      
Sbjct: 23  LQQVKLSLDDPDSYLSSWNSNDASPCRWSGVSCAGDFSSVTSVDLSSANLAGPFPSVICR 82

Query: 94  ---------------SYLGGDLREVKAGSNYERSK--LGGKVNPSLVDLKHLIHLDLSGN 136
                          S L  ++   K+    + S+  L G++  +L D+  L+HLDL+GN
Sbjct: 83  LSNLAHLSLYNNSINSTLPLNIAACKSLQTLDLSQNLLTGELPQTLADIPTLVHLDLTGN 142

Query: 137 DFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDS 196
           +F G  IP   G  ENL  L+L      G IP  LGN+S L+ L+LS    S   +  + 
Sbjct: 143 NFSG-DIPASFGKFENLEVLSLVYNLLDGTIPPFLGNISTLKMLNLSYNPFSPSRIPPE- 200

Query: 197 LSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSL 256
                                          +L +L+V+ LT+C L    P      S L
Sbjct: 201 -----------------------------FGNLTNLEVMWLTECHLVGQIPDSLGQLSKL 231

Query: 257 KALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNY 316
             L LA+N+    +      + GL N+V I+L +N   G+IP  L NL SLR LD   N 
Sbjct: 232 VDLDLALNDL---VGHIPPSLGGLTNVVQIELYNNSLTGEIPPELGNLKSLRLLDASMNQ 288

Query: 317 FNSTTPGWLSKFNDLEFLSVAWNSLQGTI-SSVGLE-NLTSIETLDLSGNSKLGGKIPTS 374
                P  L +   LE L++  N+L+G + +S+ L  NL  I      GN +L G +P  
Sbjct: 289 LTGKIPDELCRV-PLESLNLYENNLEGELPASIALSPNLYEIRIF---GN-RLTGGLPKD 343

Query: 375 FARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSL 434
                 L  +D+S  + S D    L     C    LE L +     SG +   L   +SL
Sbjct: 344 LGLNSPLRWLDVSENEFSGDLPADL-----CAKGELEELLIIHNSFSGVIPESLADCRSL 398

Query: 435 HTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNA 494
             + L +N   G +P     L  +  L+L NN  +G I  S+G  S+L  L LSNN+   
Sbjct: 399 TRIRLAYNRFSGSVPTGFWGLPHVNLLELVNNSFSGEISKSIGGASNLSLLILSNNEFTG 458

Query: 495 SLSEIHFVNLTKLTWFSASGN 515
           SL E    +L  L   SASGN
Sbjct: 459 SLPE-EIGSLDNLNQLSASGN 478

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  139 bits (349), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 150/506 (29%), Positives = 224/506 (44%), Gaps = 57/506 (11%)

Query: 41  EREALLKLKQDLIDPSNRLASWNTGDGDCCKWAGVFCSNITGHVLQLSLQNPFSYLGGDL 100
           E + LL++K   +D    L +WN+ D   C W GV CSN +     LSL           
Sbjct: 30  EGQYLLEIKSKFVDAKQNLRNWNSNDSVPCGWTGVMCSNYSSDPEVLSL----------- 78

Query: 101 REVKAGSNYERSKLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSG 160
                  N     L GK++PS+  L HL  LDLS N   G +IPK +G+  +L  L L+ 
Sbjct: 79  -------NLSSMVLSGKLSPSIGGLVHLKQLDLSYNGLSG-KIPKEIGNCSSLEILKLNN 130

Query: 161 AKFAGMIPLQLGNLSNLQYLDLSGTFLS-NYDLHVDSLSWLSGLYMLE-----HLDLSQM 214
            +F G IP+++G L +L+ L +    +S +  + + +L  LS L          L  S  
Sbjct: 131 NQFDGEIPVEIGKLVSLENLIIYNNRISGSLPVEIGNLLSLSQLVTYSNNISGQLPRSIG 190

Query: 215 NLSKASDWL----LVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSL 270
           NL + + +     +++ SLPS    ++  C+             SL  L LA N     L
Sbjct: 191 NLKRLTSFRAGQNMISGSLPS----EIGGCE-------------SLVMLGLAQNQLSGEL 233

Query: 271 FQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFND 330
            +    +  L+ L  + L  N+F G IP  + N TSL  L L  N      P  L     
Sbjct: 234 PK---EIGMLKKLSQVILWENEFSGFIPREISNCTSLETLALYKNQLVGPIPKELGDLQS 290

Query: 331 LEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLID 390
           LEFL +  N L GTI    + NL+    +D S N+ L G+IP     +  L  + L    
Sbjct: 291 LEFLYLYRNGLNGTIPRE-IGNLSYAIEIDFSENA-LTGEIPLELGNIEGLELLYLFENQ 348

Query: 391 LSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPP 450
           L+      L T  +     L  LDLSI  ++G +       + L  L+L  NSL G +PP
Sbjct: 349 LTGTIPVELSTLKN-----LSKLDLSINALTGPIPLGFQYLRGLFMLQLFQNSLSGTIPP 403

Query: 451 ALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWF 510
            LG  S L  LD+S+N L+G IP  L   S++  L+L  N L+ ++          L   
Sbjct: 404 KLGWYSDLWVLDMSDNHLSGRIPSYLCLHSNMIILNLGTNNLSGNIP-TGITTCKTLVQL 462

Query: 511 SASGNSLILKFNPNWVPPFQLETLQL 536
             + N+L+ +F  N      +  ++L
Sbjct: 463 RLARNNLVGRFPSNLCKQVNVTAIEL 488

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGT6|EFR_ARATH LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1

 Score =  137 bits (345), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 160/525 (30%), Positives = 242/525 (46%), Gaps = 71/525 (13%)

Query: 39  DSEREALLKLKQDLIDPSNR--LASWNTGDGDCCKWAGVFCSNITGHVLQLSLQNPFSYL 96
           +++ +ALL+ K  + + + R  LASWN      C W GV C      V+ L+L       
Sbjct: 29  ETDMQALLEFKSQVSENNKREVLASWNHSS-PFCNWIGVTCGRRRERVISLNL------- 80

Query: 97  GGDLREVKAGSNYERSKLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYL 156
           GG              KL G ++PS+ +L  L  L+L+ N F G  IP+ +G L  L+YL
Sbjct: 81  GG-------------FKLTGVISPSIGNLSFLRLLNLADNSF-GSTIPQKVGRLFRLQYL 126

Query: 157 NLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNL 216
           N+S     G IP  L N S L  +DLS   L +        S L  L  L  LDLS+ NL
Sbjct: 127 NMSYNLLEGRIPSSLSNCSRLSTVDLSSNHLGH-----GVPSELGSLSKLAILDLSKNNL 181

Query: 217 SKASDWLLVTNSLPSLKVLKLTKCQL-------------------------CHFPPLLSA 251
           +   ++     +L SL+ L     Q+                           FPP L  
Sbjct: 182 T--GNFPASLGNLTSLQKLDFAYNQMRGEIPDEVARLTQMVFFQIALNSFSGGFPPAL-Y 238

Query: 252 NFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLD 311
           N SSL++L LA N+F  +L     + + L NL  + L +NQF G IP  L N++SL   D
Sbjct: 239 NISSLESLSLADNSFSGNL--RADFGYLLPNLRRLLLGTNQFTGAIPKTLANISSLERFD 296

Query: 312 LRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSV-----GLENLTSIETLDLSGNSK 366
           +  NY + + P    K  +L +L +  NSL    SS       + N T +E LD+ G ++
Sbjct: 297 ISSNYLSGSIPLSFGKLRNLWWLGIRNNSLGNNSSSGLEFIGAVANCTQLEYLDV-GYNR 355

Query: 367 LGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTN 426
           LGG++P S A L    S  L+ + L Q+              +L+ L L    +SG L  
Sbjct: 356 LGGELPASIANL----STTLTSLFLGQNLISGTIPHDIGNLVSLQELSLETNMLSGELPV 411

Query: 427 QLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLD 486
              +  +L  ++L  N++ G +P   G ++ L+KL L++N  +G IP SLG+  +L  L 
Sbjct: 412 SFGKLLNLQVVDLYSNAISGEIPSYFGNMTRLQKLHLNSNSFHGRIPQSLGRCRYLLDLW 471

Query: 487 LSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQL 531
           +  N+LN ++ +   + +  L +   S N L   F P  V   +L
Sbjct: 472 MDTNRLNGTIPQ-EILQIPSLAYIDLSNNFLTGHF-PEEVGKLEL 514

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of elongation factor Tu (EF-Tu), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Reduces transformation by Rhizobium radiobacter probably by inducing plant defense during the interaction. Binding to the effector AvrPto1 from P.syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q6XAT2|ERL2_ARATH LRR receptor-like serine/threonine-protein kinase ERL2 OS=Arabidopsis thaliana GN=ERL2 PE=2 SV=1

 Score =  136 bits (342), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 138/515 (26%), Positives = 215/515 (41%), Gaps = 93/515 (18%)

Query: 35  VGCIDSEREALLKLKQDLIDPSNRLASWN-TGDGDCCKWAGVFCSNITGHVLQLSLQNPF 93
           V  +++E +AL+ +K    + +N L  W+   + D C W GVFC N++ +V+ L+L N  
Sbjct: 25  VSPMNNEGKALMAIKASFSNVANMLLDWDDVHNHDFCSWRGVFCDNVSLNVVSLNLSN-- 82

Query: 94  SYLGGDLREVKAGSNYERSKLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENL 153
                               LGG+++ +L DL +L  +DL GN   G QIP  +G+  +L
Sbjct: 83  ------------------LNLGGEISSALGDLMNLQSIDLQGNKLGG-QIPDEIGNCVSL 123

Query: 154 RYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQ 213
            Y++ S     G IP  +  L  L++L+L    L+                         
Sbjct: 124 AYVDFSTNLLFGDIPFSISKLKQLEFLNLKNNQLT------------------------- 158

Query: 214 MNLSKASDWLLVTNSLPSLKVLKLTKCQLC-HFPPLLSANFSSLKALHLAINNFDNSLFQ 272
                          +P+LK L L + QL    P LL                + N + Q
Sbjct: 159 ------GPIPATLTQIPNLKTLDLARNQLTGEIPRLL----------------YWNEVLQ 196

Query: 273 YGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLE 332
           Y     GLR         N   G +   +  LT L + D+R N    T P  +      E
Sbjct: 197 Y----LGLR--------GNMLTGTLSPDMCQLTGLWYFDVRGNNLTGTIPESIGNCTSFE 244

Query: 333 FLSVAWNSLQGTIS-SVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDL 391
            L V++N + G I  ++G      + TL L GN KL G+IP     +  L  +DLS  +L
Sbjct: 245 ILDVSYNQITGVIPYNIG---FLQVATLSLQGN-KLTGRIPEVIGLMQALAVLDLSDNEL 300

Query: 392 SQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPA 451
           +     +L   S  G   L        +++G +  +L     L  L+L  N L G +PP 
Sbjct: 301 TGPIPPILGNLSFTGKLYLHG-----NKLTGQIPPELGNMSRLSYLQLNDNELVGKIPPE 355

Query: 452 LGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFS 511
           LG+L  L +L+L+NN L G IP ++   + L   ++  N L+ ++  + F NL  LT+ +
Sbjct: 356 LGKLEQLFELNLANNNLVGLIPSNISSCAALNQFNVHGNFLSGAVP-LEFRNLGSLTYLN 414

Query: 512 ASGNSLILKFNPNWVPPFQLETLQLRSCHLGPHFP 546
            S NS   K          L+TL L   +     P
Sbjct: 415 LSSNSFKGKIPAELGHIINLDTLDLSGNNFSGSIP 449

Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ERL1 and ER.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGP4|Y3475_ARATH Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1

 Score =  135 bits (340), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 171/576 (29%), Positives = 240/576 (41%), Gaps = 138/576 (23%)

Query: 39  DSEREALLKLKQDLI-DPSNRLASWNTGDGDCCKWAGVFCSNITGHVLQLSLQNPFSYLG 97
           +++R+ALL+ K  +  D    L+SWN      C W GV C      V  L L        
Sbjct: 23  ETDRQALLQFKSQVSEDKRVVLSSWNH-SFPLCNWKGVTCGRKNKRVTHLELG------- 74

Query: 98  GDLREVKAGSNYERSKLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLN 157
                        R +LGG ++PS+ +L  L+ LDL  N F G  IP+ +G L  L YL+
Sbjct: 75  -------------RLQLGGVISPSIGNLSFLVSLDLYENFFGG-TIPQEVGQLSRLEYLD 120

Query: 158 ------------------------LSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLH 193
                                   L   +  G +P +LG+L+NL  L+L G      ++ 
Sbjct: 121 MGINYLRGPIPLGLYNCSRLLNLRLDSNRLGGSVPSELGSLTNLVQLNLYGN-----NMR 175

Query: 194 VDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKC---QLCH------ 244
               + L  L +LE L LS  NL            +PS  V +LT+    QL        
Sbjct: 176 GKLPTSLGNLTLLEQLALSHNNLE---------GEIPS-DVAQLTQIWSLQLVANNFSGV 225

Query: 245 FPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNL 304
           FPP L  N SSLK L +  N+F   L      +  L NL+  ++  N F G IP  L N+
Sbjct: 226 FPPAL-YNLSSLKLLGIGYNHFSGRLRPDLGIL--LPNLLSFNMGGNYFTGSIPTTLSNI 282

Query: 305 TSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLE------NLTSIET 358
           ++L  L +  N    + P +     +L+ L +  NSL G+ SS  LE      N T +ET
Sbjct: 283 STLERLGMNENNLTGSIPTF-GNVPNLKLLFLHTNSL-GSDSSRDLEFLTSLTNCTQLET 340

Query: 359 LDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSIC 418
           L + G ++LGG +P S A L                            +  L +LDL   
Sbjct: 341 LGI-GRNRLGGDLPISIANL----------------------------SAKLVTLDLGGT 371

Query: 419 QISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGEL----------------------- 455
            ISG +   +    +L  L L  N L GPLP +LG+L                       
Sbjct: 372 LISGSIPYDIGNLINLQKLILDQNMLSGPLPTSLGKLLNLRYLSLFSNRLSGGIPAFIGN 431

Query: 456 -SSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASG 514
            + L+ LDLSNN   G +P SLG  SHL  L + +NKLN ++  +  + + +L     SG
Sbjct: 432 MTMLETLDLSNNGFEGIVPTSLGNCSHLLELWIGDNKLNGTIP-LEIMKIQQLLRLDMSG 490

Query: 515 NSLILKFNPNWVPPFQ-LETLQLRSCHLGPHFPSWL 549
           NSLI    P  +   Q L TL L    L    P  L
Sbjct: 491 NSLIGSL-PQDIGALQNLGTLSLGDNKLSGKLPQTL 525

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O82318|Y2579_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 OS=Arabidopsis thaliana GN=At2g25790 PE=1 SV=1

 Score =  132 bits (332), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 169/574 (29%), Positives = 245/574 (42%), Gaps = 130/574 (22%)

Query: 40  SEREALLKLKQDLIDPSNRLASWN-TGDGDCCKWAGVFCSNITGHV-LQLSLQN------ 91
           +E E LL  K  + DP   L+SW+ +   D C W+GV C+NI+  V L LS +N      
Sbjct: 30  NELELLLSFKSSIQDPLKHLSSWSYSSTNDVCLWSGVVCNNISRVVSLDLSGKNMSGQIL 89

Query: 92  -------PF--------SYLGG----DLREVKAGS----NYERSKLGGKVNPSLVDLKHL 128
                  PF        + L G    D+    + S    N   +   G +      L +L
Sbjct: 90  TAATFRLPFLQTINLSNNNLSGPIPHDIFTTSSPSLRYLNLSNNNFSGSIPRGF--LPNL 147

Query: 129 IHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLS 188
             LDLS N F G +I   +G   NLR L+L G    G +P  LGNLS L++L L+   L+
Sbjct: 148 YTLDLSNNMFTG-EIYNDIGVFSNLRVLDLGGNVLTGHVPGYLGNLSRLEFLTLASNQLT 206

Query: 189 N---YDL-HVDSLSW---------------LSGLYMLEHLDLSQMNLS----------KA 219
                +L  + +L W               + GL  L HLDL   NLS          K 
Sbjct: 207 GGVPVELGKMKNLKWIYLGYNNLSGEIPYQIGGLSSLNHLDLVYNNLSGPIPPSLGDLKK 266

Query: 220 SDWLLVTN------------SLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFD 267
            +++ +              SL +L  L  +   L    P L A   SL+ LHL  NN  
Sbjct: 267 LEYMFLYQNKLSGQIPPSIFSLQNLISLDFSDNSLSGEIPELVAQMQSLEILHLFSNNLT 326

Query: 268 NSLFQYGSWVFGLR---------------------NLVFIDLSSNQFQG----------- 295
             + +  + +  L+                     NL  +DLS+N   G           
Sbjct: 327 GKIPEGVTSLPRLKVLQLWSNRFSGGIPANLGKHNNLTVLDLSTNNLTGKLPDTLCDSGH 386

Query: 296 -------------QIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQ 342
                        QIP  L    SL  + L+ N F+   P   +K   + FL ++ N+LQ
Sbjct: 387 LTKLILFSNSLDSQIPPSLGMCQSLERVRLQNNGFSGKLPRGFTKLQLVNFLDLSNNNLQ 446

Query: 343 GTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTF 402
           G I++  +  L   E LDLS N K  G++P  F+R  +L  +DLS   +S    Q L TF
Sbjct: 447 GNINTWDMPQL---EMLDLSVN-KFFGELP-DFSRSKRLKKLDLSRNKISGVVPQGLMTF 501

Query: 403 SSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLD 462
                  +  LDLS  +I+G +  +L   K+L  L+L HN+  G +P +  E   L  LD
Sbjct: 502 PE-----IMDLDLSENEITGVIPRELSSCKNLVNLDLSHNNFTGEIPSSFAEFQVLSDLD 556

Query: 463 LSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASL 496
           LS N L+G IP +LG +  L  +++S+N L+ SL
Sbjct: 557 LSCNQLSGEIPKNLGNIESLVQVNISHNLLHGSL 590

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	552
315436720	1020	verticillium wilt resistance-like protei	0.969	0.524	0.513	1e-129
224072885	1024	predicted protein [Populus trichocarpa]	0.934	0.503	0.476	1e-115
255581850	1082	leucine-rich repeat receptor protein kin	0.969	0.494	0.438	1e-114
255543977	1075	serine/threonine-protein kinase bri1, pu	0.929	0.477	0.462	1e-113
356561655	1052	PREDICTED: probable leucine-rich repeat	0.923	0.484	0.467	1e-110
350284769	1041	receptor-like protein [Malus x domestica	0.922	0.488	0.431	1e-109
255543957	889	serine-threonine protein kinase, plant-t	0.851	0.528	0.468	1e-108
255539443	1054	serine-threonine protein kinase, plant-t	0.936	0.490	0.427	1e-106
209970603	1038	AM19-5p [Malus floribunda]	0.909	0.483	0.427	1e-106
356561552	1019	PREDICTED: LRR receptor-like serine/thre	0.918	0.497	0.464	1e-106

>gi|315436720|gb|ADU18533.1| verticillium wilt resistance-like protein [Gossypium barbadense]

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 282/549 (51%), Positives = 364/549 (66%), Gaps = 14/549 (2%)

Query: 6   MSVSVAILFLELFVVAAMINISFCNGNSYVGCIDSEREALLKLKQDLIDPSNRLASWNTG 65
           M V V  +FL L +  +      C  N  V C + ER+ALLKLKQDLIDPS RLASW T 
Sbjct: 7   MKVVVTSIFLALLIETSTFEY-VCAANRNVSCPEVERQALLKLKQDLIDPSGRLASWGT- 64

Query: 66  DGDCCKWAGVFCSNITGHVLQLSLQNPFSYLGGDLREVKAGSNYERSKLGGKVNPSLVDL 125
           + +CC W+GV C N+TG+V+QL L+NP     G     +A   Y +    GK+NPSL+DL
Sbjct: 65  NLNCCNWSGVICDNLTGNVIQLRLRNPLDPYNGFYIPSEA---YAKMWFSGKINPSLLDL 121

Query: 126 KHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGT 185
           KHL +LDLSG++F GIQIP++LGS+  LRYLNLS A F G++P QLGNL+NL  LDL   
Sbjct: 122 KHLRYLDLSGSNFGGIQIPEFLGSMHTLRYLNLSAAGFGGVVPPQLGNLTNLHVLDLH-D 180

Query: 186 FLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHF 245
           F S   ++ ++L WLS L  L+HLDLS +NLSKASDW  VTN+LPSL  + L+ CQL   
Sbjct: 181 FSS--LVYAENLQWLSHLVKLKHLDLSSVNLSKASDWFQVTNTLPSLVEIHLSGCQLHRL 238

Query: 246 PPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLT 305
           P     NFSSL  L L+ N+F N L     W+F L +L+ +DLS N FQGQ+P GLR+L+
Sbjct: 239 PLQADVNFSSLSILDLSSNSFSNPLIP--GWIFKLNSLLSLDLSHNNFQGQLPHGLRSLS 296

Query: 306 SLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNS 365
           SLR+L+L +N F S  P WL     LEFL++  N   G+IS+ G +NLTS+ TLDLS N 
Sbjct: 297 SLRYLNLYWNNFKSAIPSWLYGLTSLEFLNLGSNYFHGSISN-GFQNLTSLTTLDLSDN- 354

Query: 366 KLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAY--ALESLDLSICQISGH 423
           +L G +P S   LC L  + LS + LS+D S++L   SS G     LESL L  C+I GH
Sbjct: 355 ELTGAVPNSMGSLCSLKKIKLSGLHLSRDLSEILQALSSPGCLLNGLESLYLDSCEIFGH 414

Query: 424 LTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLE 483
           LT+++L FK+L  L L  NS+ G +P +LG L+SL+ LDLS N +NG +P S+G+L  +E
Sbjct: 415 LTDRILLFKNLADLSLSRNSISGSIPASLGLLASLRTLDLSQNRVNGTLPESIGQLWKME 474

Query: 484 YLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLGP 543
            L LS+N L   +SE+HF NLT+L  F ASGN L+L+ +P WVPPFQL  + L S HLGP
Sbjct: 475 KLWLSHNMLEGVVSEVHFANLTRLRLFQASGNPLVLEASPEWVPPFQLGVMALSSWHLGP 534

Query: 544 HFPSWLHSQ 552
            FPSWL SQ
Sbjct: 535 KFPSWLRSQ 543

Source: Gossypium barbadense

Species: Gossypium barbadense

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224072885|ref|XP_002303927.1| predicted protein [Populus trichocarpa] gi|222841359|gb|EEE78906.1| predicted protein [Populus trichocarpa]

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 253/531 (47%), Positives = 345/531 (64%), Gaps = 15/531 (2%)

Query: 28  FCNGNSYVGCIDSEREALLKLKQDLIDPSNRLASWNTGDGDCCKWAGVFCSNITGHVLQL 87
           F  G+   GC   ER+ALLK K DL DPSNRLASW    GDCC W GV C N+TGHV++L
Sbjct: 28  FSYGSFTQGCSQIERDALLKFKHDLKDPSNRLASWAGFGGDCCTWRGVICDNVTGHVIEL 87

Query: 88  SLQNPFSYLGGDLREVKAGSNYE---RSKLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIP 144
            L++        L    A + YE   +  L G++NPSLV LKHL +LDL  NDF G+QIP
Sbjct: 88  RLRS--ISFADYLASSGASTQYEDYLKLILSGRINPSLVSLKHLRYLDLRNNDFGGVQIP 145

Query: 145 KYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLY 204
           K++G + +L++L+LS A FAG IP  LGNLS+L YL+L   +      +V++L+WLS L 
Sbjct: 146 KFIGLIGSLKHLDLSDAGFAGTIPHGLGNLSDLNYLNLHDYY---SQFNVENLNWLSQLS 202

Query: 205 MLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAIN 264
            LE LDLS ++L    +WL V N+LPSL  L L+ CQL   PP+L  NFSSL  L L+ N
Sbjct: 203 SLEFLDLSLVHLGNVFNWLEVINTLPSLVELHLSYCQLPPVPPILYVNFSSLSILDLSSN 262

Query: 265 NFDNS---LFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTT 321
             D S   +  +  WV  L+ L+ ++L++N FQG IP GL+NLT L+ LDL  N+F+S+ 
Sbjct: 263 YVDESAISMLNFPRWVSHLKTLLSLNLANNNFQGPIPNGLQNLTLLKALDLSINHFSSSI 322

Query: 322 PGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNS--KLGGKIPTSFARLC 379
           P WL  F  L+ L++  N+LQG +SS  + N+TS+ +LDLS N   K  G IP SF +LC
Sbjct: 323 PEWLYGFEHLKLLNLGSNNLQGVLSS-AIGNMTSLISLDLSLNHELKFEGGIPGSFKKLC 381

Query: 380 KLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLEL 439
            L ++ LS + L+QD ++VL+    C +  +ESLDL+ C + G LTN L +F++L  L L
Sbjct: 382 NLRTLSLSNVKLNQDIAEVLEVLLGCVSEEVESLDLAGCLLFGQLTNHLGKFRNLAYLGL 441

Query: 440 GHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEI 499
             NS+ GP+P ALGEL SL+ L LS+N LNG +P S G+L+ LE +D+S+N     +SE+
Sbjct: 442 RSNSISGPIPMALGELVSLRSLVLSDNKLNGTLPKSFGELTKLEEMDISHNLFQGEVSEV 501

Query: 500 HFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLGPHFPSWLH 550
           HF NL  L  FSA+GN L L+ +P+W+PP QL  + LRS ++GP FP W+ 
Sbjct: 502 HFANLKNLRNFSAAGNQLNLRVSPDWIPP-QLVFIDLRSWNVGPQFPKWVR 551

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581850|ref|XP_002531725.1| leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis] gi|223528628|gb|EEF30645.1| leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 263/600 (43%), Positives = 350/600 (58%), Gaps = 65/600 (10%)

Query: 10  VAILFLELFVVAAMINISFCNG----NSYVGCIDSEREALLKLKQDLIDPSNRLASWNTG 65
            ++ F+ L  + A    SF +     N+ VGC   EREAL+K K +L DPS RLASW   
Sbjct: 4   ASVTFVSLLFLIAATTFSFVHSHGSYNAAVGCNQIEREALMKFKDELQDPSKRLASWG-A 62

Query: 66  DGDCCKWAGVFCSNITGHVLQLSLQNPFSYLGGDLREVKAGSNYE----RSKLGGKVNPS 121
           D +CC W GV C N TGHV +L L+   S       +      YE    RS   GKV+ S
Sbjct: 63  DAECCTWHGVICDNFTGHVTELHLKILSSEEYYSSSDALGYYFYEEYLERSSFRGKVSQS 122

Query: 122 LVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLD 181
           L++LKHL +LDLS NDF GIQIP +LGS+E+LR+LNL GA F G IP QLGNLSNLQYL+
Sbjct: 123 LLNLKHLNYLDLSNNDFGGIQIPPFLGSMESLRHLNLYGAGFGGRIPHQLGNLSNLQYLN 182

Query: 182 LSG-TFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKC 240
           L+  +  ++  ++++SL WLS L  LE LD S ++LSKA +WL V N+LPSL  L L+  
Sbjct: 183 LNAKSIYTSAVIYIESLQWLSSLRSLEFLDFSGVDLSKAFNWLDVLNTLPSLGELHLSGS 242

Query: 241 QLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIG 300
           +L   P L + NFSSL  L+L+ NNF        SW+F L  L  +DLSSN F G IPI 
Sbjct: 243 ELYPIPLLSNVNFSSLLTLNLSANNF-----VVPSWIFRLTTLATLDLSSNNFVGSIPIH 297

Query: 301 LRNLTSLRHLDLRFNYFNSTT-------------------------PGWLSKFNDLEFLS 335
           L+N+T+LR L L  +  NS+                          P  +     L  L 
Sbjct: 298 LQNITTLRELYLSDSGLNSSIFNCLHGLAHLELLHLASNYNLDGKIPSTIGNLTSLRSLD 357

Query: 336 VAWNSLQGTISSVGLENLTSIETLDLSGNSKLG-----------------------GKIP 372
           +++NSL+  I S  + NLTS+++LDLS NS  G                       G IP
Sbjct: 358 LSFNSLEEGIPS-AIGNLTSLKSLDLSRNSLEGDIPSAIGNLASLSSLDLSRNSLEGGIP 416

Query: 373 TSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFK 432
           T F  LC L S++LS+  LSQ+ ++V +  S C +  LESL L   Q+SGHL+++L++FK
Sbjct: 417 TWFRNLCNLRSLELSINKLSQEINEVFEILSGCVSDILESLILPSSQLSGHLSDRLVKFK 476

Query: 433 SLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKL 492
           +L  L+L  N + GP+P  LGEL+ L  LDL NN LNG +P+  G LS L Y+D+SNN L
Sbjct: 477 NLAYLDLNDNLISGPIPENLGELNFLISLDLGNNKLNGSLPIDFGMLSKLNYVDISNNSL 536

Query: 493 NASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQ-LETLQLRSCHLGPHFPSWLHS 551
              +SEIHF NLT L  F AS N L L+ +P+W P FQ + T+ L+   +GP FP+W+HS
Sbjct: 537 EGEISEIHFANLTNLATFKASSNQLRLRVSPDWFPAFQRVSTISLKCWKVGPQFPTWIHS 596

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543977|ref|XP_002513051.1| serine/threonine-protein kinase bri1, putative [Ricinus communis] gi|223548062|gb|EEF49554.1| serine/threonine-protein kinase bri1, putative [Ricinus communis]

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 287/620 (46%), Positives = 365/620 (58%), Gaps = 107/620 (17%)

Query: 3   STIMSVSVAILFLELFVVAAMINISFCNGNSYVGCIDSEREALLKLKQDLIDPSNRLASW 62
           ST +SV + ILFL   +++ +  + FCN     GCI SEREALL  K  L D SN+LA+W
Sbjct: 10  STNISV-ITILFLWSLLLS-IFPVGFCNA----GCIQSEREALLNFKLHLSDTSNKLANW 63

Query: 63  NTGDGDCCKWAGVFCSNITGHVLQLSLQNP-FS-YLG-GDLREVKAGS----NYERSKLG 115
             GDGDCC+W+GV C N TGHVL+L L  P FS Y G G     +A S     Y R+ L 
Sbjct: 64  -VGDGDCCRWSGVICHNSTGHVLELHLGTPSFSEYTGPGSFYSQQAASLSVEYYARTALA 122

Query: 116 GKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLS 175
           GK++PSL++LK+L +LDLS N+FEGI+IPK+LGS+E+LRYLNLS A F GMIP QLGNLS
Sbjct: 123 GKISPSLLNLKYLRYLDLSNNNFEGIRIPKFLGSMESLRYLNLSNAGFGGMIPPQLGNLS 182

Query: 176 NLQYLDLS----GTFLSNY--DLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSL 229
           NLQYLDL       F + Y  ++HV++L WLS L  L+ LDLS +NL  + DWL V NSL
Sbjct: 183 NLQYLDLRVGDVHGFRARYTFNMHVENLHWLSSLSSLKFLDLSYVNL-YSFDWLNVINSL 241

Query: 230 PSLKVLKLTKCQL--CHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFID 287
           PSL  L L++CQL    FP  ++ NFSSL  L                           D
Sbjct: 242 PSLLQLHLSRCQLGGASFPSTVNLNFSSLAIL---------------------------D 274

Query: 288 LSSNQFQGQIPIGLRNLT-SLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTIS 346
           LS N FQG IP  L+NLT SL+ LDL +N FNS+ P WL  F +LEFLS+  N LQG IS
Sbjct: 275 LSVNDFQGPIPNSLQNLTSSLKELDLGYNSFNSSLPNWLYGFTNLEFLSLNSNRLQGNIS 334

Query: 347 SVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCG 406
           S+ + N+TS+ TLDLS N  + G IPTSF  LC L S+ L  + LSQ  + VL+  S C 
Sbjct: 335 SL-IGNMTSLITLDLSSNLAISGGIPTSFKHLCNLRSLVLDTVTLSQKINDVLEILSGCI 393

Query: 407 AYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNN 466
           +  LES  +  CQ+SG+LT+ L  FK+L +L+L +NS+ GP+P +L  L +L+ LDLS N
Sbjct: 394 SDELESFSMYSCQLSGYLTDDLGHFKNLASLDLSYNSISGPIPKSLRHLCNLRSLDLSGN 453

Query: 467 M-----------------------------LNGFIPLSLGKLSHLEYLDLSNNKLNASL- 496
                                         L+G IP SLG+++ L  L LS+NKLN +L 
Sbjct: 454 RWSQEINDVLEILSDCPTNVLESLSLSDCELSGPIPSSLGEMASLIRLSLSSNKLNGTLP 513

Query: 497 -----------------------SEIHFVNLTKLTWFSAS--GNSLILKFNPNWVPPFQL 531
                                  +E+HF NLTKL  F  S   N  +L+   NW PPFQL
Sbjct: 514 ESFGQLTRLEIAFFDGNLLEGEVTEVHFANLTKLFIFDGSMMANGPVLRVGSNWTPPFQL 573

Query: 532 ETLQLRSCHLGPHFPSWLHS 551
             L LRS  +GP FP+WLHS
Sbjct: 574 HYLSLRSWKIGPQFPAWLHS 593

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356561655|ref|XP_003549095.1| PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710-like [Glycine max]

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 243/520 (46%), Positives = 320/520 (61%), Gaps = 10/520 (1%)

Query: 37  CIDSEREALLKLKQDLIDPSNRLASWNTGDGDCCKWAGVFCSNITGHVLQLSLQNPFSYL 96
           CI SERE LLK+K +LIDPSNRL SWN    +CC W GV C N+T HVLQL L   FS  
Sbjct: 25  CIPSERETLLKIKNNLIDPSNRLWSWNHNHTNCCHWYGVLCHNVTSHVLQLHLNTTFSAA 84

Query: 97  GGDLREVKAGSNYERSKLGGKVNPSLVDLKHLIHLDLSGNDF--EGIQIPKYLGSLENLR 154
             D         YE+S+ GG+++P L DLKHL HL+LSGN F   G+ IP +LG++ +L 
Sbjct: 85  FYDGYYHFDEEAYEKSQFGGEISPCLADLKHLNHLNLSGNYFLGAGMSIPSFLGTMTSLT 144

Query: 155 YLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQM 214
           +L+LS   F G IP Q+GNLSNL YLDL G   S   +  +++ W+S ++ LE+L LS  
Sbjct: 145 HLDLSLTGFMGKIPSQIGNLSNLVYLDLGG--YSVEPMLAENVEWVSSMWKLEYLHLSYA 202

Query: 215 NLSKASDWLLVTNSLPSLKVLKLTKCQLCHF--PPLLSANFSSLKALHLAINNFDNSLFQ 272
           NLSKA  WL    SLPSL  L L+ C L H+  P LL  NFSSL+ LHL+  +F  ++  
Sbjct: 203 NLSKAFHWLHTLQSLPSLTHLDLSGCTLPHYNEPSLL--NFSSLQTLHLSFTSFSPAISF 260

Query: 273 YGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLE 332
              W+F L+ LV + L  N+ QG IP G+RNLT L++LDL  N F+S+ P  L   + L+
Sbjct: 261 VPKWIFKLKKLVSLQLWGNEIQGPIPGGIRNLTLLQNLDLSGNSFSSSIPDCLYGLHRLK 320

Query: 333 FLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLS 392
           FL++  N L GTIS   L NLTS+  LDLSGN +L G IPTS   LC L  +D S + L+
Sbjct: 321 FLNLRDNHLHGTISD-ALGNLTSLVELDLSGN-QLEGNIPTSLGNLCNLRDIDFSNLKLN 378

Query: 393 QDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPAL 452
           Q  +++L+  + C ++ L  L +   ++SGHLT+ +  FK++ TL   +NS+ G LP + 
Sbjct: 379 QQVNELLEILAPCISHGLTRLAVQSSRLSGHLTDHIGAFKNIDTLLFSNNSIGGALPRSF 438

Query: 453 GELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSA 512
           G+LSSL+ LDLS N  +G    SLG L  L  L +  N     + E    NLT L    A
Sbjct: 439 GKLSSLRYLDLSTNKFSGNPFESLGSLCKLSSLYIGGNLFQTVVKEDDLANLTSLMEIHA 498

Query: 513 SGNSLILKFNPNWVPPFQLETLQLRSCHLGPHFPSWLHSQ 552
           SGN+  LK  PNW+P FQL  L +RS  LGP FPSW+ SQ
Sbjct: 499 SGNNFTLKVGPNWLPNFQLFHLDVRSWQLGPSFPSWIKSQ 538

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350284769|gb|AEQ27756.1| receptor-like protein [Malus x domestica]

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 261/605 (43%), Positives = 345/605 (57%), Gaps = 96/605 (15%)

Query: 1   MKSTIMSVSVAILFLELFVVAAMINISFCNGNSYVG--CIDSEREALLKLKQDLIDPSNR 58
           M+ T+  V + I FL    +    +I+ CNGN      C +SER+ALL  KQDL DP+NR
Sbjct: 1   MERTMRVVLLLIRFLAFATIT--FSIALCNGNPGWPPLCKESERQALLMFKQDLKDPANR 58

Query: 59  LASW-NTGDGDCCKWAGVFCSNITGHVLQLSLQNPFSYLGGDLREVKAGSNYERSKLGGK 117
           LASW    D DCC W GV C +ITGH+ +L L N   Y G             +S  GG+
Sbjct: 59  LASWVAEEDSDCCSWTGVVCDHITGHIHELHLNNTDRYFGF------------KSSFGGR 106

Query: 118 VNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNL 177
           +NPSL+ LKHL +LDLS N+F   QIP + GS+ +L +LNL  +KF G+IP +LGNLS+L
Sbjct: 107 INPSLLSLKHLNYLDLSYNNFSTTQIPSFFGSMTSLTHLNLGQSKFYGIIPHKLGNLSSL 166

Query: 178 QYLDLSGTF-LSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLK 236
           +YL+L+ +F      L V++L W+SGL +L+HLDLS +NLSKASDWL VTN LPSL  L 
Sbjct: 167 RYLNLNSSFNFYRSTLQVENLQWISGLSLLKHLDLSYVNLSKASDWLQVTNMLPSLVELY 226

Query: 237 LTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLV------------ 284
           +++C+L   PPL + NF+SL  L L+ N F NSL     WVF L+NLV            
Sbjct: 227 MSECELYQIPPLPTPNFTSLVVLDLSDNLF-NSLMP--RWVFSLKNLVSLRLIDCDFRGP 283

Query: 285 ----------------------------------FIDLS--SNQFQGQIPIGLRNLTSLR 308
                                             F++LS  SNQ  GQ+P  ++N+T L+
Sbjct: 284 IPSISQNITSLREIDLSLNSISLDPIPKWLFTQKFLELSLESNQLTGQLPRSIQNMTGLK 343

Query: 309 HLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLG 368
            LDL  N FNST P WL    +LE L +  N+L+G ISS  + N+TS+  L L  N+ L 
Sbjct: 344 VLDLGGNDFNSTIPEWLYSLTNLESLLLFDNALRGEISS-SIGNMTSLVNLHLD-NNLLE 401

Query: 369 GKIPTSFARLCKLTSVDLSLIDLS-QDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQ 427
           GKIP S   LCKL  VDLS    + Q  S++ ++ S CG   ++SL L    I+G     
Sbjct: 402 GKIPNSLGHLCKLKVVDLSENHFTVQRPSEIFESLSRCGPDGIKSLSLRYTNIAG----- 456

Query: 428 LLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDL 487
                              P+P +LG LSSL+KLD+S N  NG     +G+L  L  LD+
Sbjct: 457 -------------------PIPISLGNLSSLEKLDISVNQFNGTFTEVVGQLKMLTDLDI 497

Query: 488 SNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLGPHFPS 547
           S N     +SE+ F NLTKL +F+A+GNSL LK + +WVPPFQLE+LQL S HLGP +P 
Sbjct: 498 SYNLFEGVVSEVSFSNLTKLKYFNANGNSLTLKTSRDWVPPFQLESLQLDSWHLGPEWPM 557

Query: 548 WLHSQ 552
           WL +Q
Sbjct: 558 WLQTQ 562

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543957|ref|XP_002513041.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223548052|gb|EEF49544.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 252/538 (46%), Positives = 319/538 (59%), Gaps = 68/538 (12%)

Query: 21  AAMINISFCNGNSYVGCIDSEREALLKLKQDLIDPSNRLASWNTGDGDCCKWAGVFCSNI 80
             +I++  C   S  GC   E+EALL  K  L DPS+RLASW   D DCC W GV C + 
Sbjct: 17  TTIISVGLCFNAS--GCNQIEKEALLMFKHGLTDPSSRLASWGY-DADCCTWFGVICDDF 73

Query: 81  TGHVLQLSLQNP---FSYLGGDLREVKAGSNYERSKLGGKVNPSLVDLKHLIHLDLSGND 137
           TGHV++L L  P    S   GD  E      +ERS  GGK++ SLV+LKHLI  DLS N+
Sbjct: 74  TGHVIELQLSTPSYAASNFTGDYEEY-----WERSAFGGKISHSLVNLKHLISFDLSHNN 128

Query: 138 FEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLS-GTFLSNYDLHVDS 196
           FEGIQIP++LGS+ +LR+L+LS A F GMIP QLGNLSNLQYL+++   F +NY L+V+S
Sbjct: 129 FEGIQIPRFLGSMGSLRFLDLSSAGFGGMIPHQLGNLSNLQYLNINVDQFENNYTLYVES 188

Query: 197 LSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHF--PPLLSANFS 254
           L+W+SGL  LE L LS ++LSKA DW  V N+LPSL  L L+ CQL      PL SANFS
Sbjct: 189 LNWVSGLASLEFLALSGVDLSKAIDWFDVLNTLPSLVELHLSLCQLYQVNPAPLPSANFS 248

Query: 255 SLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRF 314
           SL  L L+ NN   S+     W+F L  L  + LS+N F  +IPI L NLTSL  L L  
Sbjct: 249 SLAILDLSRNNLGLSVPH---WIFSLEKLTSLCLSNNSFVEEIPIHLLNLTSLEKLVLSH 305

Query: 315 NYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTS 374
           N FNS+ P                       S++G  NLTS+  LDLSGNS  GG IP +
Sbjct: 306 NNFNSSIP-----------------------SAIG--NLTSLNLLDLSGNSLEGG-IPIA 339

Query: 375 FARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSL 434
              LC L  +DLS   LSQ+ ++V +  S C    L+ LDLS   + GH TN+L QFK+L
Sbjct: 340 SKNLCNLRLLDLSFNKLSQEINEVFEILSKCAPERLKLLDLSSNHLPGHFTNRLEQFKNL 399

Query: 435 HTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNA 494
             L +  NS+ GP+P  LGEL  L+ +D+S N+L G                        
Sbjct: 400 VFLSVYDNSISGPIPEILGELKFLEDIDISKNLLKG------------------------ 435

Query: 495 SLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQ-LETLQLRSCHLGPHFPSWLHS 551
            +SEIHF NLT L +F A+GN L L+ +P+WVPPFQ L +L LR   +GP FPSW+ S
Sbjct: 436 DVSEIHFANLTNLRYFYAAGNQLSLRVSPDWVPPFQGLTSLHLRYWQVGPQFPSWIRS 493

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539443|ref|XP_002510786.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223549901|gb|EEF51388.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 243/569 (42%), Positives = 329/569 (57%), Gaps = 52/569 (9%)

Query: 11  AILFLELFVVAAMINISFCNGNSYVGCIDSEREALLKLKQDLIDPSNRLASWNTGDGDCC 70
            + FL   ++  +++      NS V C   ER+ALL+ KQDL DPSNRL+SW   + DCC
Sbjct: 5   TVHFLAFLILVIILHAPLYYSNSDVLCNKIERQALLQSKQDLKDPSNRLSSWVAAELDCC 64

Query: 71  KWAGVFCSNITGHVLQLSLQNPFSYLGGDLREVKAGSNYERSKLGGKVNPSLVDLKHLIH 130
           KWAG+ C N+TGHV +L+L+NP   L    RE      YER  L               +
Sbjct: 65  KWAGIVCDNLTGHVKELNLRNPLDSLQVH-RET-----YERFMLQASE-----------Y 107

Query: 131 LDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSG--TFLS 188
           LDLS N+FEGI IP ++GSL +LRYL L  A F G+IP QLGNLS+L+ L + G   +L 
Sbjct: 108 LDLSYNNFEGIPIPSFIGSLASLRYLGLYEAGFEGLIPYQLGNLSSLRELGVQGACVYLG 167

Query: 189 NYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPL 248
              L+VD LSWLS L  L+HLDLS + L  ASDWLLV N+LPSL  L L+KC L   PPL
Sbjct: 168 KAKLYVDDLSWLSRLPSLQHLDLSCVKLRAASDWLLVMNALPSLSELHLSKCNLVVIPPL 227

Query: 249 LSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLS------------------- 289
              NF++L  L ++ N F +S+    +W+F L NL  +D+S                   
Sbjct: 228 SDVNFTALSVLEISQNQFGSSI---PNWIFTLTNLTSLDMSFCYFDGPIPNDLSHLTSLL 284

Query: 290 -----SNQFQGQIPIGLRNLTSLRHLDLR-FNYFNSTTPGWLSKFNDLEFLSVAWNSLQG 343
                 N   G IP G +NLT LR+L+L   N  +S  P WL  F  LE L ++  ++QG
Sbjct: 285 SLDLSVNNLYGPIPTGFQNLTGLRNLNLYGVNLTSSRIPEWLYDFRQLESLDLSQTNVQG 344

Query: 344 TISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFS 403
            ISS  ++NL ++  L L+  +KL G +P +   LC L  + LS   L  D S+V ++F+
Sbjct: 345 EISST-IQNLIALVNLKLAF-TKLEGTLPQTIGNLCNLQIIRLSGNKLGGDVSKVFESFA 402

Query: 404 SCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDL 463
            C + +LE L       SGH+ N + Q  +L  L+L  N + G +P ++G LSSL    L
Sbjct: 403 GCISQSLEELG---NNFSGHIGNAIGQLGTLQHLDLSDNFISGSIPESIGRLSSLIWAFL 459

Query: 464 SNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNP 523
            NN L G +P++   LS+L+ +D+S+N L   +SE+HF NLT LT F AS N L+LK +P
Sbjct: 460 PNNQLTGTLPVTFRNLSNLQTIDISHNLLEGVVSEVHFTNLTSLTAFVASHNHLVLKVSP 519

Query: 524 NWVPPFQLETLQLRSCHLGPHFPSWLHSQ 552
            WVPPF+L+ L LR  +LGP FP WL SQ
Sbjct: 520 AWVPPFRLKELGLRYWNLGPQFPIWLQSQ 548

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|209970603|gb|ACJ03064.1| AM19-5p [Malus floribunda]

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 257/601 (42%), Positives = 334/601 (55%), Gaps = 99/601 (16%)

Query: 7   SVSVAILFLELFVVAAMINISF--CNGNSYVG--CIDSEREALLKLKQDLIDPSNRLASW 62
           S+ V +L +      A I  SF  CNGN      C DSER+ALL  KQDL DP+NRL+SW
Sbjct: 4   SMRVVLLLIRFLAAIATITFSFGLCNGNPDWPPLCKDSERQALLMFKQDLKDPANRLSSW 63

Query: 63  -NTGDGDCCKWAGVFCSNITGHVLQLSLQNP-FSYLGGDLREVKAGSNYERSKLGGKVNP 120
               D DCC W GV C +ITGH+ +L L +  F +             Y  S  GGK+NP
Sbjct: 64  VAEEDSDCCSWTGVVCDHITGHIHELHLNSSNFDW-------------YINSFFGGKINP 110

Query: 121 SLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYL 180
           SL+ LKHL +LDLS NDF   QIP + GS+ +L +LNL  ++F G+IP  LGNLS+L+YL
Sbjct: 111 SLLSLKHLNYLDLSNNDFSSTQIPSFFGSMTSLTHLNLGTSEFDGIIPHNLGNLSSLRYL 170

Query: 181 DLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKC 240
           +LS  +     L V++L W++GL +L+HLDLS +NLSKASDWL VTN LPSL  L +  C
Sbjct: 171 NLSSLY--GPRLKVENLQWIAGLSLLKHLDLSYVNLSKASDWLQVTNMLPSLVELIMLDC 228

Query: 241 QLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIG 300
           QL    PL + NF+SL  L L+IN F NSL     WVF L+NLV + +S   FQG IP  
Sbjct: 229 QLDQIAPLPTPNFTSLVVLDLSIN-FFNSLMP--RWVFSLKNLVSLHISDCGFQGPIPSI 285

Query: 301 LRNLTSLRHLDLRFNY-------------------------------------------- 316
             N+TSLR +DL FNY                                            
Sbjct: 286 SENITSLREIDLSFNYISLDLIPKWLFNQKFLKLSLEQNQLIGQLPSSIQNMTGLTTLNL 345

Query: 317 ----FNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIP 372
               FNST P WL   N+LE L ++ N+ +G ISS  + N+TS+  L L  N+ L GKIP
Sbjct: 346 EGNKFNSTIPEWLYNLNNLESLILSSNAFRGEISS-SIGNMTSLVNLHLD-NNLLEGKIP 403

Query: 373 TSFARLCKLTSVDLSLIDLS-QDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQF 431
            S   LCKL  +DLS    + +  S++ ++ S CG + ++SL L    ISG         
Sbjct: 404 NSLGHLCKLKVLDLSENHFTVRRPSEMFESLSRCGPHGIKSLSLRYTNISG--------- 454

Query: 432 KSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNK 491
                          P+P +LG LSSL+KLD+S N  +G     +G+L  L  LD+S N 
Sbjct: 455 ---------------PIPMSLGNLSSLEKLDISINQFDGTFTEVIGQLKMLTDLDISYNS 499

Query: 492 LNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLGPHFPSWLHS 551
           L  ++SE  F NLTKL  F A+GNS   K + +W+PPFQLE+LQL S HLGP +P WL +
Sbjct: 500 LEGAVSEAFFSNLTKLKHFIANGNSFTWKTSRDWLPPFQLESLQLDSWHLGPEWPMWLQT 559

Query: 552 Q 552
           Q
Sbjct: 560 Q 560

Source: Malus floribunda

Species: Malus floribunda

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356561552|ref|XP_003549045.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Glycine max]

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 244/525 (46%), Positives = 326/525 (62%), Gaps = 18/525 (3%)

Query: 37  CIDSEREALLKLKQDLIDPSNRLASWNTGDGDCCKWAGVFCSNITGHVLQLSLQNPFS-- 94
           CI SERE LLK K +LIDPSNRL SWN    +CC W GV C NIT H+LQL L +  S  
Sbjct: 26  CIPSERETLLKFKNNLIDPSNRLWSWNHNHTNCCHWYGVLCHNITSHLLQLHLNSSDSAF 85

Query: 95  ---YLGGDLREVKAGSNYERSKLGGKVNPSLVDLKHLIHLDLSGNDF--EGIQIPKYLGS 149
              Y  G   +++A   Y R   GG+++P L DLKHL +LDLSGN F  EG+ IP +LG+
Sbjct: 86  YHGYGYGSFYDIEA---YRRWSFGGEISPCLADLKHLNYLDLSGNTFLGEGMSIPSFLGT 142

Query: 150 LENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHL 209
           + +L +LNLS   F G IP Q+GNLSNL YLDLS  +     L  +++ W+S ++ LE+L
Sbjct: 143 MTSLTHLNLSATGFYGKIPPQIGNLSNLVYLDLS--YFDLEPLLAENVEWVSSMWKLEYL 200

Query: 210 DLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHF--PPLLSANFSSLKALHLAINNFD 267
           DLS  NLSKA  WL    SLPSL  L L+ C+L H+  P LL  NFSSL+ LHL+  ++ 
Sbjct: 201 DLSYANLSKAFHWLHTLQSLPSLTHLYLSGCKLPHYNEPSLL--NFSSLQTLHLSRTSYS 258

Query: 268 NSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSK 327
            ++     W+F L+ LV + L  N FQG IP G+RNLT L++LDL FN F+S+ P  L  
Sbjct: 259 PAISFVPKWIFKLKKLVSLQLLDNGFQGPIPGGIRNLTLLQNLDLSFNSFSSSIPDCLYG 318

Query: 328 FNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLS 387
            + L+FL++  N+L GTIS   L NLTS+  LDLS N +L G IPTS   LC L  +DLS
Sbjct: 319 LHRLKFLNLMGNNLHGTISD-ALGNLTSLVELDLSHN-QLEGNIPTSLGNLCNLRVIDLS 376

Query: 388 LIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGP 447
            + L+Q  +++L+  + C ++ L  L +   ++SG+LT+ +  FK++ TL   +NS+ G 
Sbjct: 377 YLKLNQQVNELLEILAPCISHGLTRLAVQSSRLSGNLTDHIGAFKNIDTLLFSNNSIGGA 436

Query: 448 LPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKL 507
           LP + G+LSSL+ LDLS N  +G    SL  LS L  L +  N  +  + E    NLT L
Sbjct: 437 LPRSFGKLSSLRYLDLSMNKFSGNPFESLRSLSKLLSLHIDGNLFHGVVKEDDLANLTSL 496

Query: 508 TWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLGPHFPSWLHSQ 552
           T   ASGN+  L   PNW+P FQL  L++ S  LGP FP W+ SQ
Sbjct: 497 TEIHASGNNFTLTVGPNWIPNFQLNYLEVTSWQLGPSFPLWIQSQ 541

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	552
TAIR|locus:2044767	905	AT2G34930 "AT2G34930" [Arabido	0.746	0.455	0.378	7e-57
TAIR|locus:2091353	1016	AT3G28040 [Arabidopsis thalian	0.864	0.469	0.313	3.9e-41
TAIR|locus:2094613	784	RLP38 "receptor like protein 3	0.840	0.591	0.283	2e-39
TAIR|locus:2149922	1031	EFR "EF-TU receptor" [Arabidop	0.851	0.455	0.296	9.3e-36
TAIR|locus:2079142	1010	AT3G47570 [Arabidopsis thalian	0.922	0.503	0.297	3.7e-35
TAIR|locus:2182870	1192	EMS1 "EXCESS MICROSPOROCYTES1"	0.927	0.429	0.295	2.1e-34
TAIR|locus:2032553	996	HSL1 "HAESA-like 1" [Arabidops	0.876	0.485	0.299	3.4e-33
TAIR|locus:2102499	964	AT3G56370 [Arabidopsis thalian	0.873	0.5	0.297	1.1e-32
TAIR|locus:2144392	957	RLP53 "receptor like protein 5	0.867	0.500	0.281	2.8e-32
TAIR|locus:2825384	847	RLP12 "AT1G71400" [Arabidopsis	0.894	0.583	0.283	5.3e-32

TAIR|locus:2044767 AT2G34930 "AT2G34930" [Arabidopsis thaliana (taxid:3702)]

 Score = 590 (212.7 bits), Expect = 7.0e-57, P = 7.0e-57
 Identities = 168/444 (37%), Positives = 240/444 (54%)

Query:    17 LFVVAAMINISFCNGNSYVGCIDSEREALLKLKQDLIDPSNRLASWNTGDGDCCKWAGVF 76
             L ++  + N+++ +  S   CI +ER+ALL  +  L D S+RL SW+ G  DCC W GV 
Sbjct:    14 LILILLLKNLNYGSAAS-PKCISTERQALLTFRAALTDLSSRLFSWS-GP-DCCNWPGVL 70

Query:    77 CSNITGHVLQLSLQNPFSYLGGDLREVKAGSNYERSKLGGKVNPSLVDLKHLIHLDLSGN 136
             C   T HV+++ L+NP      D+R       Y+R  L GK++PSL  LK L +LDLS N
Sbjct:    71 CDARTSHVVKIDLRNPSQ----DVRS----DEYKRGSLRGKIHPSLTQLKFLSYLDLSSN 122

Query:   137 DFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDL-SGTF--LSNYDLH 193
             DF  ++IP+++G + +LRYLNLS + F+G IP  LGNLS L+ LDL + +F       L 
Sbjct:   123 DFNELEIPEFIGQIVSLRYLNLSSSSFSGEIPTSLGNLSKLESLDLYAESFGDSGTLSLR 182

Query:   194 VDSLSWLSGLYM-LEHLDLSQMNLSKASD-WLLVTNSLPSLKVLKLTKCQLCHFPPLLSA 251
               +L WLS L   L++L++  +NLS A + WL   + + +LK L L   +L + PP LS+
Sbjct:   183 ASNLRWLSSLSSSLKYLNMGYVNLSGAGETWLQDFSRISALKELHLFNSELKNLPPTLSS 242

Query:   252 NFSSLKALHLAINNFDNSLFQ-YGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHL 310
             + + LK L + ++  +NSL     +W+FGL NL  + L  +  QG IP G +NL  L  L
Sbjct:   243 S-ADLKLLEV-LDLSENSLNSPIPNWLFGLTNLRKLFLRWDFLQGSIPTGFKNLKLLETL 300

Query:   311 DLRFNY-FNSTTPGWLSKFNDLEFLSVAWNSLQGTI----SSVGLENLTSIETLDLSGNS 365
             DL  N       P  L     L+FL ++ N L G I     +       S+  LDLS N 
Sbjct:   301 DLSNNLALQGEIPSVLGDLPQLKFLDLSANELNGQIHGFLDAFSRNKGNSLVFLDLSSN- 359

Query:   366 KLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYA-LESLDLSICQISGHL 424
             KL G +P S   L  L ++DLS    S  F+  +   SS G  A L+ LDLS   ++G +
Sbjct:   360 KLAGTLPESLGSLRNLQTLDLS----SNSFTGSVP--SSIGNMASLKKLDLSNNAMNGTI 413

Query:   425 TNQLLQFKSLHTLELGHNSLFGPL 448
                L Q   L  L L  N+  G L
Sbjct:   414 AESLGQLAELVDLNLMANTWGGVL 437

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0005618 "cell wall" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP;IMP

TAIR|locus:2091353 AT3G28040 [Arabidopsis thaliana (taxid:3702)]

 Score = 447 (162.4 bits), Expect = 3.9e-41, P = 3.9e-41
 Identities = 160/511 (31%), Positives = 239/511 (46%)

Query:    17 LFVVAAMINISFCNGNSYVGCIDSEREALLKLKQDLIDPSNRLASWNTGDGDCCKWAGVF 76
             LF+   M++ S  NG++    ++ +   L+  K DL DP + L SW   D   C W+ V 
Sbjct:    13 LFLTLTMMS-SLINGDTDSIQLNDDVLGLIVFKSDLNDPFSHLESWTEDDNTPCSWSYVK 71

Query:    77 CSNITGHVLQLSLQNPFSYLG----G--DLREVKAGSNYERSKLGGKVNPSLVDLKHLIH 130
             C+  T  V++LSL    +  G    G   L+ +K  S    +   G +N +L +  HL  
Sbjct:    72 CNPKTSRVIELSLDG-LALTGKINRGIQKLQRLKVLS-LSNNNFTGNIN-ALSNNNHLQK 128

Query:   131 LDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQL-GNLSNLQYLDLSGTFLSN 189
             LDLS N+  G QIP  LGS+ +L++L+L+G  F+G +   L  N S+L+YL LS   L  
Sbjct:   129 LDLSHNNLSG-QIPSSLGSITSLQHLDLTGNSFSGTLSDDLFNNCSSLRYLSLSHNHLEG 187

Query:   190 YDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLL 249
                 + S   L    +L  L+LS+   S    ++     L  L+ L L+   L    PL 
Sbjct:   188 ---QIPST--LFRCSVLNSLNLSRNRFSGNPSFVSGIWRLERLRALDLSSNSLSGSIPLG 242

Query:   250 SANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRH 309
               +  +LK L L  N F  +L    S +    +L  +DLSSN F G++P  L+ L SL H
Sbjct:   243 ILSLHNLKELQLQRNQFSGAL---PSDIGLCPHLNRVDLSSNHFSGELPRTLQKLKSLNH 299

Query:   310 LDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGG 369
              D+  N  +   P W+     L  L  + N L G + S  + NL S++ L+LS N KL G
Sbjct:   300 FDVSNNLLSGDFPPWIGDMTGLVHLDFSSNELTGKLPS-SISNLRSLKDLNLSEN-KLSG 357

Query:   370 KIPTSFARLCKLTSVDLSLIDLS-QDFS-QVLDTFSSCGAYALESLDLSICQISGHLTNQ 427
             ++P S    CK    +L ++ L   DFS  + D F   G   L+ +D S   ++G +   
Sbjct:   358 EVPESLES-CK----ELMIVQLKGNDFSGNIPDGFFDLG---LQEMDFSGNGLTGSIPRG 409

Query:   428 LLQ-FKSLHTLELGHNSLFGPLPPALGEXXXXXXXXXXXXXXXGFIPLSLGKLSHLEYLD 486
               + F+SL  L+L HNSL G +P  +G                  +P  +  L +L  LD
Sbjct:   410 SSRLFESLIRLDLSHNSLTGSIPGEVGLFIHMRYLNLSWNHFNTRVPPEIEFLQNLTVLD 469

Query:   487 LSNNKLNASLSEIHFVNLTKLTWFSASGNSL 517
             L N+ L  S+          L      GNSL
Sbjct:   470 LRNSALIGSVPA-DICESQSLQILQLDGNSL 499

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2094613 RLP38 "receptor like protein 38" [Arabidopsis thaliana (taxid:3702)]

 Score = 405 (147.6 bits), Expect = 2.0e-39, Sum P(2) = 2.0e-39
 Identities = 141/497 (28%), Positives = 222/497 (44%)

Query:     6 MSVSVAILFLELFVVAAMINISFCNGNSYVGCIDSEREALLKLKQDLIDPSNRLAS-WNT 64
             + +++ I F   F +  + N +F +  +   C   +R+ALL+L+++   PS  L + WN 
Sbjct:    10 LGITITIYFF--FCLLPLPN-TFASPPTQSLCRHDQRDALLELQKEFPIPSVILQNPWNK 66

Query:    65 GDGDCCKWAGVFCSNITGHVLQLSLQNPFSYLGGDLREVKA--------GSNYERSKLGG 116
             G  DCC W GV C  I G V+ L L    S     L+   A          +     L G
Sbjct:    67 GI-DCCSWGGVTCDAILGEVISLKLYF-LSTASTSLKSSSALFKLQHLTHLDLSNCNLQG 124

Query:   117 KVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSN 176
             ++  S+ +L HL HLDLS N   G ++P  +G+L  L Y++L G    G IP    NL+ 
Sbjct:   125 EIPSSIENLSHLTHLDLSTNHLVG-EVPASIGNLNQLEYIDLRGNHLRGNIPTSFANLTK 183

Query:   177 LQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLK 236
             L  LDL     +  D+       LS L  L  LDLS  +    S +    + L +L+ + 
Sbjct:   184 LSLLDLHENNFTGGDIV------LSNLTSLAILDLSSNHFK--SFFSADLSGLHNLEQIF 235

Query:   237 LTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQ 296
               +       P      SSL  + L+ N F+  +  +G+     R L  +D+S N F G+
Sbjct:   236 GNENSFVGLFPASLLKISSLDKIQLSQNQFEGPI-DFGNTSSSSR-LTMLDISHNNFIGR 293

Query:   297 IPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSI 356
             +P  L  L +L  LDL  N F   +P  +SK  +L  L +++N L+G +    +   +++
Sbjct:   294 VPSSLSKLVNLELLDLSHNNFRGLSPRSISKLVNLTSLDISYNKLEGQVPYF-IWKPSNL 352

Query:   357 ETLDLSGNSKLG-GKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDL 415
             +++DLS NS    GK         KL  ++L    L     Q +     C    +  LDL
Sbjct:   353 QSVDLSHNSFFDLGK-SVEVVNGAKLVGLNLGSNSLQGPIPQWI-----CNFRFVFFLDL 406

Query:   416 SICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGEXXXXXXXXXXXXXXXGFIPLS 475
             S  + +G +   L      +TL L +NSL G LP    +               G +P S
Sbjct:   407 SDNRFTGSIPQCLKNSTDFNTLNLRNNSLSGFLPELCMDSTMLRSLDVSYNNFVGKLPKS 466

Query:   476 LGKLSHLEYLDLSNNKL 492
             L     +E+L++  NK+
Sbjct:   467 LMNCQDMEFLNVRGNKI 483

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2149922 EFR "EF-TU receptor" [Arabidopsis thaliana (taxid:3702)]

 Score = 397 (144.8 bits), Expect = 9.3e-36, P = 9.3e-36
 Identities = 151/509 (29%), Positives = 233/509 (45%)

Query:    39 DSEREALLKLKQDLIDPSNR--LASWNTGDGDCCKWAGVFCSNITGHVLQLSLQNPFSYL 96
             +++ +ALL+ K  + + + R  LASWN      C W GV C      V+ L+L   F   
Sbjct:    29 ETDMQALLEFKSQVSENNKREVLASWNHSS-PFCNWIGVTCGRRRERVISLNLGG-FKLT 86

Query:    97 G------GDLREVKAGSNYERSKLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSL 150
             G      G+L  ++   N   +  G  +   +  L  L +L++S N  EG +IP  L + 
Sbjct:    87 GVISPSIGNLSFLRL-LNLADNSFGSTIPQKVGRLFRLQYLNMSYNLLEG-RIPSSLSNC 144

Query:   151 ENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLS-NYDLHVDSLSWLSGLYMLEHL 209
               L  ++LS       +P +LG+LS L  LDLS   L+ N+     SL  L+ L  L+  
Sbjct:   145 SRLSTVDLSSNHLGHGVPSELGSLSKLAILDLSKNNLTGNFPA---SLGNLTSLQKLDFA 201

Query:   210 DLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNS 269
               +QM   +  D +     +   ++  L       FPP L  N SSL++L LA N+F  +
Sbjct:   202 -YNQMR-GEIPDEVARLTQMVFFQIA-LNSFS-GGFPPALY-NISSLESLSLADNSFSGN 256

Query:   270 L-FQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKF 328
             L   +G  +  LR L+   L +NQF G IP  L N++SL   D+  NY + + P    K 
Sbjct:   257 LRADFGYLLPNLRRLL---LGTNQFTGAIPKTLANISSLERFDISSNYLSGSIPLSFGKL 313

Query:   329 NDLEFLSVAWNSLQGTISSVGLE------NLTSIETLDLSGNSKLGGKIPTSFARLCKLT 382
              +L +L +  NSL G  SS GLE      N T +E LD+ G ++LGG++P S A L    
Sbjct:   314 RNLWWLGIRNNSL-GNNSSSGLEFIGAVANCTQLEYLDV-GYNRLGGELPASIANL---- 367

Query:   383 SVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHN 442
             S  L+ + L Q+              +L+ L L    +SG L     +  +L  ++L  N
Sbjct:   368 STTLTSLFLGQNLISGTIPHDIGNLVSLQELSLETNMLSGELPVSFGKLLNLQVVDLYSN 427

Query:   443 SLFGPLPPALGEXXXXXXXXXXXXXXXGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFV 502
             ++ G +P   G                G IP SLG+  +L  L +  N+LN ++ +   +
Sbjct:   428 AISGEIPSYFGNMTRLQKLHLNSNSFHGRIPQSLGRCRYLLDLWMDTNRLNGTIPQ-EIL 486

Query:   503 NLTKLTWFSASGNSLILKFNPNWVPPFQL 531
              +  L +   S N L   F P  V   +L
Sbjct:   487 QIPSLAYIDLSNNFLTGHF-PEEVGKLEL 514

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010204 "defense response signaling pathway, resistance gene-independent" evidence=IMP

GO:0016045 "detection of bacterium" evidence=RCA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0002764 "immune response-regulating signaling pathway" evidence=IMP

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0019199 "transmembrane receptor protein kinase activity" evidence=TAS

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2079142 AT3G47570 [Arabidopsis thaliana (taxid:3702)]

 Score = 394 (143.8 bits), Expect = 3.7e-35, P = 3.7e-35
 Identities = 164/551 (29%), Positives = 244/551 (44%)

Query:    15 LELFVVAAMINISFCNGNSYVGCIDSEREALLKLKQDLIDPSNR-LASWNTGDGDCCKWA 73
             + LF++ A   +     + +    +++R+ALL+ K  + +     L+SWN      C W 
Sbjct:     1 MRLFLLLAFNALMLLETHGFTD--ETDRQALLQFKSQVSEDKRVVLSSWNHSF-PLCNWK 57

Query:    74 GVFCSNITGHVL-----QLSLQNPFSYLGGDLREVKAGSNYERSKLGGKVNPSLVDLKHL 128
             GV C      V      +L L    S   G+L  + +   YE    GG +   +  L  L
Sbjct:    58 GVTCGRKNKRVTHLELGRLQLGGVISPSIGNLSFLVSLDLYENF-FGGTIPQEVGQLSRL 116

Query:   129 IHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLS 188
              +LD+  N   G  IP  L +   L  L L   +  G +P +LG+L+NL  L+L G  + 
Sbjct:   117 EYLDMGINYLRG-PIPLGLYNCSRLLNLRLDSNRLGGSVPSELGSLTNLVQLNLYGNNMR 175

Query:   189 NYDLHVDSLSWLSGLYMLEHLDLSQMNLSKA--SDWLLVTNSLPSLKVLKLTKCQLCHFP 246
                L       L  L +LE L LS  NL     SD   +T  + SL+++      +  FP
Sbjct:   176 G-KLPTS----LGNLTLLEQLALSHNNLEGEIPSDVAQLTQ-IWSLQLVANNFSGV--FP 227

Query:   247 PLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTS 306
             P L  N SSLK L +  N+F   L +    +  L NL+  ++  N F G IP  L N+++
Sbjct:   228 PALY-NLSSLKLLGIGYNHFSGRL-RPDLGIL-LPNLLSFNMGGNYFTGSIPTTLSNIST 284

Query:   307 LRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSI------ETLD 360
             L  L +  N    + P +     +L+ L +  NSL G+ SS  LE LTS+      ETL 
Sbjct:   285 LERLGMNENNLTGSIPTF-GNVPNLKLLFLHTNSL-GSDSSRDLEFLTSLTNCTQLETLG 342

Query:   361 LSGNSKLGGKIPTSFARL-CKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQ 419
             + G ++LGG +P S A L  KL ++DL    +S      +    +     L+ L L    
Sbjct:   343 I-GRNRLGGDLPISIANLSAKLVTLDLGGTLISGSIPYDIGNLIN-----LQKLILDQNM 396

Query:   420 ISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGEXXXXXXXXXXXXXXXGFIPLSLGKL 479
             +SG L   L +  +L  L L  N L G +P  +G                G +P SLG  
Sbjct:   397 LSGPLPTSLGKLLNLRYLSLFSNRLSGGIPAFIGNMTMLETLDLSNNGFEGIVPTSLGNC 456

Query:   480 SHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQ-LETLQLRS 538
             SHL  L + +NKLN ++  +  + + +L     SGNSLI    P  +   Q L TL L  
Sbjct:   457 SHLLELWIGDNKLNGTIP-LEIMKIQQLLRLDMSGNSLIGSL-PQDIGALQNLGTLSLGD 514

Query:   539 CHLGPHFPSWL 549
               L    P  L
Sbjct:   515 NKLSGKLPQTL 525

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2182870 EMS1 "EXCESS MICROSPOROCYTES1" [Arabidopsis thaliana (taxid:3702)]

 Score = 392 (143.0 bits), Expect = 2.1e-34, P = 2.1e-34
 Identities = 163/552 (29%), Positives = 246/552 (44%)

Query:    18 FVVAAMINISFCNGNSYVGCIDSEREALLKLKQDLIDPSNRLASWN-TGDGDCCKWAGVF 76
             F+ A  + + F   +S +  + SE  +L+  K+ L +PS  L+SWN +     C W GV 
Sbjct:     3 FLTALFLFLFFSFSSSAIVDLSSETTSLISFKRSLENPS-LLSSWNVSSSASHCDWVGVT 61

Query:    77 CSNITGHVLQLSLQNPFSYLGGDL-REVKAGSNYER-----SKLGGKVNPSLVDLKHLIH 130
             C  + G V  LSL  P   L G + +E+ +  N        ++  GK+ P + +LKHL  
Sbjct:    62 C--LLGRVNSLSL--PSLSLRGQIPKEISSLKNLRELCLAGNQFSGKIPPEIWNLKHLQT 117

Query:   131 LDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLG-NLSNLQYLDLSGTFLSN 189
             LDLSGN   G+ +P+ L  L  L YL+LS   F+G +P     +L  L  LD+S   LS 
Sbjct:   118 LDLSGNSLTGL-LPRLLSELPQLLYLDLSDNHFSGSLPPSFFISLPALSSLDVSNNSLSG 176

Query:   190 -YDLHVDSLSWLSGLYM-LEHL------DLSQMNLSK--ASDWLLVTNSLPS-LKVLK-L 237
                  +  LS LS LYM L         ++  ++L K  A+        LP  +  LK L
Sbjct:   177 EIPPEIGKLSNLSNLYMGLNSFSGQIPSEIGNISLLKNFAAPSCFFNGPLPKEISKLKHL 236

Query:   238 TKCQLCHFPPLLSANFSSLKALH-LAINNFDNS-LFQYGSWVFG-LRNLVFIDLSSNQFQ 294
              K  L  + PL  +   S   LH L+I N  ++ L        G  ++L  + LS N   
Sbjct:   237 AKLDLS-YNPLKCSIPKSFGELHNLSILNLVSAELIGLIPPELGNCKSLKSLMLSFNSLS 295

Query:   295 GQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLT 354
             G +P+ L  +  L     R N  + + P W+ K+  L+ L +A N   G I    +E+  
Sbjct:   296 GPLPLELSEIPLLTFSAER-NQLSGSLPSWMGKWKVLDSLLLANNRFSGEIPHE-IEDCP 353

Query:   355 SIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLD 414
              ++ L L+ N  L G IP        L ++DLS   LS    +V D  SS G    E L 
Sbjct:   354 MLKHLSLASNL-LSGSIPRELCGSGSLEAIDLSGNLLSGTIEEVFDGCSSLG----ELL- 407

Query:   415 LSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGEXXXXXXXXXXXXXXXGFIPL 474
             L+  QI+G +   L +   L  L+L  N+  G +P +L +               G++P 
Sbjct:   408 LTNNQINGSIPEDLWKLP-LMALDLDSNNFTGEIPKSLWKSTNLMEFTASYNRLEGYLPA 466

Query:   475 SLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETL 534
              +G  + L+ L LS+N+L   +       LT L+  + + N    K          L TL
Sbjct:   467 EIGNAASLKRLVLSDNQLTGEIPR-EIGKLTSLSVLNLNANMFQGKIPVELGDCTSLTTL 525

Query:   535 QLRSCHLGPHFP 546
              L S +L    P
Sbjct:   526 DLGSNNLQGQIP 537

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009556 "microsporogenesis" evidence=IMP

GO:0010234 "tapetal cell fate specification" evidence=IMP

GO:0016020 "membrane" evidence=IDA

GO:0019199 "transmembrane receptor protein kinase activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2032553 HSL1 "HAESA-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 384 (140.2 bits), Expect = 3.4e-33, P = 3.4e-33
 Identities = 154/515 (29%), Positives = 226/515 (43%)

Query:    45 LLKLKQDLIDPSNRLASWNTGDGDCCKWAGVFC----SNITGHVLQ-LSLQNPFSYLGGD 99
             L ++K  L DP + L+SWN+ D   C+W+GV C    S++T   L   +L  PF  +   
Sbjct:    23 LQQVKLSLDDPDSYLSSWNSNDASPCRWSGVSCAGDFSSVTSVDLSSANLAGPFPSVICR 82

Query:   100 LREVKAGSNYERSKLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLS 159
             L  +   S Y  S +   +  ++   K L  LDLS N   G ++P+ L  +  L +L+L+
Sbjct:    83 LSNLAHLSLYNNS-INSTLPLNIAACKSLQTLDLSQNLLTG-ELPQTLADIPTLVHLDLT 140

Query:   160 GAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLS-WLSGLYMLEHLDLSQMNLSK 218
             G  F+G IP   G   NL+ L L       Y+L   ++  +L  +  L+ L+LS  N   
Sbjct:   141 GNNFSGDIPASFGKFENLEVLSLV------YNLLDGTIPPFLGNISTLKMLNLSY-NPFS 193

Query:   219 ASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVF 278
              S       +L +L+V+ LT+C L    P      S L  L LA+N+    +      + 
Sbjct:   194 PSRIPPEFGNLTNLEVMWLTECHLVGQIPDSLGQLSKLVDLDLALNDLVGHI---PPSLG 250

Query:   279 GLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAW 338
             GL N+V I+L +N   G+IP  L NL SLR LD   N      P  L +   LE L++  
Sbjct:   251 GLTNVVQIELYNNSLTGEIPPELGNLKSLRLLDASMNQLTGKIPDELCRV-PLESLNLYE 309

Query:   339 NSLQGTI-SSVGLE-NLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFS 396
             N+L+G + +S+ L  NL  I    + GN   GG +P        L  +D+S  + S D  
Sbjct:   310 NNLEGELPASIALSPNLYEIR---IFGNRLTGG-LPKDLGLNSPLRWLDVSENEFSGDLP 365

Query:   397 QVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGEXX 456
               L     C    LE L +     SG +   L   +SL  + L +N   G +P       
Sbjct:   366 ADL-----CAKGELEELLIIHNSFSGVIPESLADCRSLTRIRLAYNRFSGSVPTGFWGLP 420

Query:   457 XXXXXXXXXXXXXGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNS 516
                          G I  S+G  S+L  L LSNN+   SL E    +L  L   SASGN 
Sbjct:   421 HVNLLELVNNSFSGEISKSIGGASNLSLLILSNNEFTGSLPE-EIGSLDNLNQLSASGNK 479

Query:   517 LILKFNPNWVPPFQLETLQLRSCHLGPHFPSWLHS 551
                    + +   +L TL L          S + S
Sbjct:   480 FSGSLPDSLMSLGELGTLDLHGNQFSGELTSGIKS 514

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007020 "microtubule nucleation" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048653 "anther development" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2102499 AT3G56370 [Arabidopsis thaliana (taxid:3702)]

 Score = 380 (138.8 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 157/528 (29%), Positives = 232/528 (43%)

Query:    45 LLKLKQDLIDPSNRLASWNTGDGDCCKWAGVFCSNITGHVLQLSLQNPFSY---LGGDLR 101
             L+  K DL DP  +LASWN  D   C W GV C   T  V +L+L   FS    +G  L 
Sbjct:    32 LIVFKADLRDPEQKLASWNEDDYTPCSWNGVKCHPRTNRVTELNLDG-FSLSGRIGRGLL 90

Query:   102 EVKA--GSNYERSKLGGKVNPS-LVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNL 158
             +++     +   + L G +NP+ L+ L +L  +DLS N   G    ++     +LR L+L
Sbjct:    91 QLQFLHKLSLSNNNLTGIINPNMLLSLVNLKVVDLSSNGLSGSLPDEFFRQCGSLRVLSL 150

Query:   159 SGAKFAGMIPLQLGNLSNLQYLDLSGT-FLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLS 217
             +  K  G IP+ + + S+L  L+LS   F  +  L +    W   L  L  LDLS+  L 
Sbjct:   151 AKNKLTGKIPVSISSCSSLAALNLSSNGFSGSMPLGI----W--SLNTLRSLDLSRNELE 204

Query:   218 KASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSL---FQYG 274
                ++    + L +L+ L L++ +L    P    +   LK + L+ N+   SL   FQ  
Sbjct:   205 --GEFPEKIDRLNNLRALDLSRNRLSGPIPSEIGSCMLLKTIDLSENSLSGSLPNTFQQL 262

Query:   275 SWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFL 334
             S  + L      +L  N  +G++P  +  + SL  LDL  N F+   P  +     L+ L
Sbjct:   263 SLCYSL------NLGKNALEGEVPKWIGEMRSLETLDLSMNKFSGQVPDSIGNLLALKVL 316

Query:   335 SVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQD 394
             + + N L G++  V   N  ++  LDLSGNS L GK+P     L +  S D+S +     
Sbjct:   317 NFSGNGLIGSLP-VSTANCINLLALDLSGNS-LTGKLPMW---LFQDGSRDVSALKNDNS 371

Query:   395 FS-----QVLD----TFSS-CGAYA-----LESLDLSICQISGHLTNQLLQFKSLHTLEL 439
                    QVLD     FS   GA       LE L LS   ++G + + + + K L  L++
Sbjct:   372 TGGIKKIQVLDLSHNAFSGEIGAGLGDLRDLEGLHLSRNSLTGPIPSTIGELKHLSVLDV 431

Query:   440 GHNSLFGPLPPALGEXXXXXXXXXXXXXXXGFIPLSLGKLSHLEYLDLSNNKLNASLSEI 499
              HN L G +P   G                G IP S+   S L  L LS+NKL  S+   
Sbjct:   432 SHNQLNGMIPRETGGAVSLEELRLENNLLEGNIPSSIKNCSSLRSLILSHNKLLGSIPP- 490

Query:   500 HFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLGPHFPS 547
                 LT+L     S N L             L T  +   HL    P+
Sbjct:   491 ELAKLTRLEEVDLSFNELAGTLPKQLANLGYLHTFNISHNHLFGELPA 538

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0000272 "polysaccharide catabolic process" evidence=RCA

GO:0005982 "starch metabolic process" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008356 "asymmetric cell division" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0048653 "anther development" evidence=RCA

TAIR|locus:2144392 RLP53 "receptor like protein 53" [Arabidopsis thaliana (taxid:3702)]

 Score = 377 (137.8 bits), Expect = 2.8e-32, P = 2.8e-32
 Identities = 149/529 (28%), Positives = 246/529 (46%)

Query:    53 IDPSNRLASWNTGDGDCCKWAGVFCSNITGHVLQL-----SLQNPFSYLGGDLREVKAGS 107
             I+   +  SW   + DCC W GV C+  +G V++L     SL   F +    +R +   +
Sbjct:    67 IESPRKTDSWGN-NSDCCNWEGVTCNAKSGEVIELDLSCSSLHGRF-HSNSSIRNLHFLT 124

Query:   108 NYERS--KLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAG 165
               + S     G++  S+ +L HL +LDLS N F G QI   +G+L  L YLNL   +F+G
Sbjct:   125 TLDLSFNDFKGQITSSIENLSHLTYLDLSSNHFSG-QILNSIGNLSRLTYLNLFDNQFSG 183

Query:   166 MIPLQLGNLSNLQYLDLS-GTFLSNYDLHVDSLSWLSGLYMLEHLDLSQM-----NLSKA 219
               P  + NLS+L +LDLS   F   +   +  LS L+ L +  +    Q+     NLS  
Sbjct:   184 QAPSSICNLSHLTFLDLSYNRFFGQFPSSIGGLSHLTTLSLFSNKFSGQIPSSIGNLSNL 243

Query:   220 SDWLLVTNS----LPSL--KVLKLTKCQLC--HFPPLLSANFSSLKAL-HLAINNFDNSL 270
             +   L  N+    +PS    + +LT   L   +F   + ++F +L  L  L ++  DN L
Sbjct:   244 TTLDLSNNNFSGQIPSFIGNLSQLTFLGLFSNNFVGEIPSSFGNLNQLTRLYVD--DNKL 301

Query:   271 F-QYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFN 329
                + + +  L  L  + LS+N+F G +P  + +L++L   D   N F  T P +L    
Sbjct:   302 SGNFPNVLLNLTGLSLLSLSNNKFTGTLPPNITSLSNLMDFDASDNAFTGTFPSFLFTIP 361

Query:   330 DLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLI 389
              L ++ +  N L+GT+    + + +++  LD+ GN+   G IP+S ++L KL  +D+S +
Sbjct:   362 SLTYIRLNGNQLKGTLEFGNISSPSNLYELDI-GNNNFIGPIPSSISKLVKLFRLDISHL 420

Query:   390 DLSQ--DFSQVLDTFSSCGAYALESL-DLSICQISG----HLTNQLLQFKSLHTLELGHN 442
             +     DFS     FS      L+SL DL+I  ++      L   L  FK L  L+L  N
Sbjct:   421 NTQGPVDFS----IFSH-----LKSLLDLNISHLNTTTRIDLNYFLSYFKRLLLLDLSGN 471

Query:   443 SLFGPLPPALGEXXXXXXXXXXXXXXXGFIPL-SLGKLSH-LEYLDLSNNKLNASLSEIH 500
              +      ++ +               G        +  H L +LD+SNNK+   + +  
Sbjct:   472 HVSATNKSSVSDPPSQLIQSLYLSGC-GITEFPEFVRTQHELGFLDISNNKIKGQVPDWL 530

Query:   501 FVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLGPHFPSWL 549
             +  L  L + + S N+LI    P+   P  L  L   +  +G   PS++
Sbjct:   531 W-RLPILYYVNLSNNTLIGFQRPSKPEPSLLYLLGSNNNFIGK-IPSFI 577

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2825384 RLP12 "AT1G71400" [Arabidopsis thaliana (taxid:3702)]

 Score = 374 (136.7 bits), Expect = 5.3e-32, P = 5.3e-32
 Identities = 156/550 (28%), Positives = 247/550 (44%)

Query:    37 CIDSEREALLKLKQDL-IDPSNRLAS-----WNTGDGDCCKWAGVFCSNITGHVLQLSLQ 90
             C D +R+ALL+ + +  I+ S  + +     WN    DCC W GV C++ +G V+ L + 
Sbjct:    34 CRDDQRDALLEFRGEFPINASWHIMNQWRGPWNKST-DCCLWNGVTCNDKSGQVISLDIP 92

Query:    91 NPF--SYL--GGDLREVKAGSNYERSK--LGGKVNPSLVDLKHLIHLDLSGNDFEGIQIP 144
             N F  +YL     L +++   + + +   L G++  SL +L HL  ++L  N F G +IP
Sbjct:    93 NTFLNNYLKTNSSLFKLQYLRHLDLTNCNLYGEIPSSLGNLSHLTLVNLYFNKFVG-EIP 151

Query:   145 KYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDL-SGTFLSNYDLHVDSLSWLSGL 203
               +G+L  LR+L L+     G IP  LGNLS L  L+L S   +       DS+     L
Sbjct:   152 ASIGNLNQLRHLILANNVLTGEIPSSLGNLSRLVNLELFSNRLVGKIP---DSIG---DL 205

Query:   204 YMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAI 263
               L +L L+  NL       L   +L +L  L LT  QL    P   A+  +L  + L +
Sbjct:   206 KQLRNLSLASNNLIGEIPSSL--GNLSNLVHLVLTHNQLVGEVP---ASIGNL--IELRV 258

Query:   264 NNFDNSLFQYGSWVFGLRNL----VFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNS 319
              +F+N+    G+      NL    +F+ LSSN F    P  +    +L + D+ +N F+ 
Sbjct:   259 MSFENNSLS-GNIPISFANLTKLSIFV-LSSNNFTSTFPFDMSIFHNLEYFDVSYNSFSG 316

Query:   320 TTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLC 379
               P  L     LE + +  N   G I      + T ++ L L G ++L G IP S +RL 
Sbjct:   317 PFPKSLLLIPSLESIYLQENQFTGPIEFANTSSSTKLQDLIL-GRNRLHGPIPESISRLL 375

Query:   380 KLTSVDLS--------------LIDLSQ-DFSQ--VLDTFSSCGAYALESLDLSICQISG 422
              L  +D+S              L++L   D S+  +     +C  + L ++ LS    S 
Sbjct:   376 NLEELDISHNNFTGAIPPTISKLVNLLHLDLSKNNLEGEVPAC-LWRLNTMVLSHNSFSS 434

Query:   423 HLTNQLLQFKSLHTLELGHNSLFGPLPPALGEXXXXXXXXXXXXXXXGFIPLSLGKLS-H 481
                N   +   +  L+L  NS  GP+P  + +               G IP  +   S  
Sbjct:   435 -FENTSQEEALIEELDLNSNSFQGPIPYMICKLSSLGFLDLSNNLFSGSIPSCIRNFSGS 493

Query:   482 LEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHL 541
             ++ L+L +N  + +L +I F   T+L     S N L  KF  + +    LE + + S  +
Sbjct:   494 IKELNLGDNNFSGTLPDI-FSKATELVSLDVSHNQLEGKFPKSLINCKALELVNVESNKI 552

Query:   542 GPHFPSWLHS 551
                FPSWL S
Sbjct:   553 KDIFPSWLES 562

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00031679 hypothetical protein (1024 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	552
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-37
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-35
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-25
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-12
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	1e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-06
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	4e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	2e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.003
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  146 bits (369), Expect = 6e-37
 Identities = 146/483 (30%), Positives = 210/483 (43%), Gaps = 93/483 (19%)

Query: 41  EREALLKLKQDLIDPSNRLASWNTGDGDCCKWAGVFCSNITGHVLQLSLQNPFSYLGGDL 100
           E E LL  K  + DP   L++WN+   D C W G+ C+N +  V+ + L           
Sbjct: 30  ELELLLSFKSSINDPLKYLSNWNS-SADVCLWQGITCNNSS-RVVSIDL----------- 76

Query: 101 REVKAGSNYERSKLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSL-ENLRYLNLS 159
               +G N     + GK++ ++  L ++  ++LS N   G  IP  + +   +LRYLNLS
Sbjct: 77  ----SGKN-----ISGKISSAIFRLPYIQTINLSNNQLSG-PIPDDIFTTSSSLRYLNLS 126

Query: 160 GAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKA 219
              F G IP   G++ NL+ LDLS   LS             G    +            
Sbjct: 127 NNNFTGSIPR--GSIPNLETLDLSNNMLS-------------GEIPND------------ 159

Query: 220 SDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFG 279
                   S  SLKVL L    L    P    N +SL+ L LA N       Q    +  
Sbjct: 160 ------IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVG---QIPRELGQ 210

Query: 280 LRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWN 339
           +++L +I L  N   G+IP  +  LTSL HLDL +N      P  L    +L++L +  N
Sbjct: 211 MKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQN 270

Query: 340 SLQGTI--SSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFS- 396
            L G I  S   L+ L S   LDLS NS L G+IP    +L  L  + L     S +F+ 
Sbjct: 271 KLSGPIPPSIFSLQKLIS---LDLSDNS-LSGEIPELVIQLQNLEILHL----FSNNFTG 322

Query: 397 ------------QVLDTFS---SCGAYA-------LESLDLSICQISGHLTNQLLQFKSL 434
                       QVL  +S   S            L  LDLS   ++G +   L    +L
Sbjct: 323 KIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNL 382

Query: 435 HTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNA 494
             L L  NSL G +P +LG   SL+++ L +N  +G +P    KL  + +LD+SNN L  
Sbjct: 383 FKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQG 442

Query: 495 SLS 497
            ++
Sbjct: 443 RIN 445

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  140 bits (354), Expect = 5e-35
 Identities = 131/387 (33%), Positives = 192/387 (49%), Gaps = 27/387 (6%)

Query: 114 LGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGN 173
           L G++   +  L  L HLDL  N+  G  IP  LG+L+NL+YL L   K +G IP  + +
Sbjct: 224 LSGEIPYEIGGLTSLNHLDLVYNNLTG-PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFS 282

Query: 174 LSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLK 233
           L  L  LDLS   LS     +  L  +  L  LE L L   N +      L   SLP L+
Sbjct: 283 LQKLISLDLSDNSLSG---EIPEL--VIQLQNLEILHLFSNNFTGKIPVAL--TSLPRLQ 335

Query: 234 VLKLTKCQLCHFPPLLSANFSSLKALHLAINNFD----NSLFQYGSWVFGLRNLVFIDLS 289
           VL+L   +     P      ++L  L L+ NN        L   G       NL  + L 
Sbjct: 336 VLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSG-------NLFKLILF 388

Query: 290 SNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVG 349
           SN  +G+IP  L    SLR + L+ N F+   P   +K   + FL ++ N+LQG I+S  
Sbjct: 389 SNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRK 448

Query: 350 LENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYA 409
            + + S++ L L+ N   GG +P SF    +L ++DLS    S    + L + S      
Sbjct: 449 WD-MPSLQMLSLARNKFFGG-LPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSE----- 500

Query: 410 LESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLN 469
           L  L LS  ++SG + ++L   K L +L+L HN L G +P +  E+  L +LDLS N L+
Sbjct: 501 LMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLS 560

Query: 470 GFIPLSLGKLSHLEYLDLSNNKLNASL 496
           G IP +LG +  L  +++S+N L+ SL
Sbjct: 561 GEIPKNLGNVESLVQVNISHNHLHGSL 587

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  108 bits (272), Expect = 9e-25
 Identities = 104/313 (33%), Positives = 146/313 (46%), Gaps = 42/313 (13%)

Query: 242 LCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGL 301
           +C +  +   N S + ++ L+  N      +  S +F L  +  I+LS+NQ  G IP  +
Sbjct: 57  VCLWQGITCNNSSRVVSIDLSGKNISG---KISSAIFRLPYIQTINLSNNQLSGPIPDDI 113

Query: 302 RNLT-SLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTI-SSVGLENLTSIETL 359
              + SLR+L+L  N F  + P       +LE L ++ N L G I + +G    +S++ L
Sbjct: 114 FTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGS--FSSLKVL 169

Query: 360 DLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQ 419
           DL GN  L GKIP S   L  L                             E L L+  Q
Sbjct: 170 DLGGNV-LVGKIPNSLTNLTSL-----------------------------EFLTLASNQ 199

Query: 420 ISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKL 479
           + G +  +L Q KSL  + LG+N+L G +P  +G L+SL  LDL  N L G IP SLG L
Sbjct: 200 LVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNL 259

Query: 480 SHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQ-LETLQLRS 538
            +L+YL L  NKL+  +    F +L KL     S NSL  +  P  V   Q LE L L S
Sbjct: 260 KNLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSDNSLSGEI-PELVIQLQNLEILHLFS 317

Query: 539 CHLGPHFPSWLHS 551
            +     P  L S
Sbjct: 318 NNFTGKIPVALTS 330

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 75.3 bits (185), Expect = 4e-14
 Identities = 75/267 (28%), Positives = 114/267 (42%), Gaps = 14/267 (5%)

Query: 114 LGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGN 173
           L G++   L    +L  L L  N  EG +IPK LG+  +LR + L    F+G +P +   
Sbjct: 368 LTGEIPEGLCSSGNLFKLILFSNSLEG-EIPKSLGACRSLRRVRLQDNSFSGELPSEFTK 426

Query: 174 LSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLK 233
           L  + +LD+S   L      ++S  W   +  L+ L L++         L  +     L+
Sbjct: 427 LPLVYFLDISNNNLQG---RINSRKW--DMPSLQMLSLARNKFFGG---LPDSFGSKRLE 478

Query: 234 VLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQF 293
            L L++ Q     P    + S L  L L+ N     +    S     + LV +DLS NQ 
Sbjct: 479 NLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELS---SCKKLVSLDLSHNQL 535

Query: 294 QGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENL 353
            GQIP     +  L  LDL  N  +   P  L     L  ++++ N L G++ S G    
Sbjct: 536 SGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGA--F 593

Query: 354 TSIETLDLSGNSKLGGKIPTSFARLCK 380
            +I    ++GN  L G   TS    CK
Sbjct: 594 LAINASAVAGNIDLCGGDTTSGLPPCK 620

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 69.8 bits (171), Expect = 2e-12
 Identities = 35/94 (37%), Positives = 58/94 (61%)

Query: 403 SSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLD 462
           S+ G + ++ L L    + G + N + + + L ++ L  NS+ G +PP+LG ++SL+ LD
Sbjct: 413 STKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLD 472

Query: 463 LSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASL 496
           LS N  NG IP SLG+L+ L  L+L+ N L+  +
Sbjct: 473 LSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 53.5 bits (129), Expect = 1e-09
 Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 38 IDSEREALLKLKQDL-IDPSNRLASWNTGDGDCCKWAGVFCS 78
          ++ +R+ALL  K  L  DPS  L+SWN    D C W GV C 
Sbjct: 1  LNDDRDALLAFKSSLNGDPSGALSSWNPSSSDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 60.2 bits (146), Expect = 2e-09
 Identities = 50/157 (31%), Positives = 66/157 (42%), Gaps = 31/157 (19%)

Query: 39  DSEREALLKLKQDLIDPSNRLASWNTGDGDCC-----KWAGVFCS--NITGHVLQLSLQN 91
             E  AL  LK  L  P  R   WN   GD C      W+G  C   +  G         
Sbjct: 371 LEEVSALQTLKSSLGLPL-RFG-WN---GDPCVPQQHPWSGADCQFDSTKGKW------- 418

Query: 92  PFSYLGGDLREVKAGSNYERSKLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLE 151
                         G   +   L G +   +  L+HL  ++LSGN   G  IP  LGS+ 
Sbjct: 419 -----------FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRG-NIPPSLGSIT 466

Query: 152 NLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLS 188
           +L  L+LS   F G IP  LG L++L+ L+L+G  LS
Sbjct: 467 SLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.1 bits (138), Expect = 1e-08
 Identities = 31/82 (37%), Positives = 52/82 (63%), Gaps = 1/82 (1%)

Query: 410 LESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLN 469
           L+S++LS   I G++   L    SL  L+L +NS  G +P +LG+L+SL+ L+L+ N L+
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503

Query: 470 GFIPLSLG-KLSHLEYLDLSNN 490
           G +P +LG +L H    + ++N
Sbjct: 504 GRVPAALGGRLLHRASFNFTDN 525

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.1 bits (138), Expect = 1e-08
 Identities = 33/81 (40%), Positives = 46/81 (56%), Gaps = 1/81 (1%)

Query: 437 LELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASL 496
           L L +  L G +P  + +L  L+ ++LS N + G IP SLG ++ LE LDLS N  N S+
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 497 SEIHFVNLTKLTWFSASGNSL 517
            E     LT L   + +GNSL
Sbjct: 483 PE-SLGQLTSLRILNLNGNSL 502

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 57.2 bits (138), Expect = 2e-08
 Identities = 58/211 (27%), Positives = 83/211 (39%), Gaps = 60/211 (28%)

Query: 112 SKLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQL 171
           + L G++N    D+  L  L L+ N F G  +P   GS + L  L+LS  +F+G +P +L
Sbjct: 438 NNLQGRINSRKWDMPSLQMLSLARNKFFG-GLPDSFGS-KRLENLDLSRNQFSGAVPRKL 495

Query: 172 GNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPS 231
           G+LS L  L LS   LS      +    LS    L  LDLS   LS              
Sbjct: 496 GSLSELMQLKLSENKLSG-----EIPDELSSCKKLVSLDLSHNQLSG------------- 537

Query: 232 LKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSN 291
                         P    A+FS +  L                          +DLS N
Sbjct: 538 ------------QIP----ASFSEMPVLSQ------------------------LDLSQN 557

Query: 292 QFQGQIPIGLRNLTSLRHLDLRFNYFNSTTP 322
           Q  G+IP  L N+ SL  +++  N+ + + P
Sbjct: 558 QLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 53.3 bits (128), Expect = 2e-07
 Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 1/71 (1%)

Query: 280 LRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWN 339
           LR+L  I+LS N  +G IP  L ++TSL  LDL +N FN + P  L +   L  L++  N
Sbjct: 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN 500

Query: 340 SLQGTI-SSVG 349
           SL G + +++G
Sbjct: 501 SLSGRVPAALG 511

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 46.8 bits (112), Expect = 4e-07
 Identities = 26/61 (42%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 457 SLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNS 516
           +LK LDLSNN L      +   L +L+ LDLS N L  S+S   F  L  L     SGN+
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNN 59

Query: 517 L 517
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 50.4 bits (120), Expect = 1e-06
 Identities = 77/247 (31%), Positives = 115/247 (46%), Gaps = 23/247 (9%)

Query: 282 NLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFND-LEFLSVAWNS 340
            L  +DL+ N+ +  I   L  LT+L  LDL  N      P  +      L+ L ++ N 
Sbjct: 94  PLPSLDLNLNRLRSNIS-ELLELTNLTSLDLDNNNITDIPP-LIGLLKSNLKELDLSDNK 151

Query: 341 LQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLD 400
           ++       L NL +++ LDLS N      +P   + L  L ++DLS  +   D    ++
Sbjct: 152 IE--SLPSPLRNLPNLKNLDLSFNDLS--DLPKLLSNLSNLNNLDLS-GNKISDLPPEIE 206

Query: 401 TFSSCGAYALESLDLS---ICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSS 457
                   ALE LDLS   I ++   L+N     K+L  LEL +N L   LP ++G LS+
Sbjct: 207 L-----LSALEELDLSNNSIIELLSSLSNL----KNLSGLELSNNKLE-DLPESIGNLSN 256

Query: 458 LKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSL 517
           L+ LDLSNN +      SLG L++L  LDLS N L+ +L  I  + L      +      
Sbjct: 257 LETLDLSNNQI--SSISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLK 314

Query: 518 ILKFNPN 524
            L+   N
Sbjct: 315 ALELKLN 321

Length = 394

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 48.5 bits (116), Expect = 4e-06
 Identities = 79/325 (24%), Positives = 113/325 (34%), Gaps = 56/325 (17%)

Query: 125 LKHLIHLDLSGN---DFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQ-------LGNL 174
           L  L  L L GN   +     +   L    +L+ L LS     G IP         L   
Sbjct: 22  LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLS-LNETGRIPRGLQSLLQGLTKG 80

Query: 175 SNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLL---VTNSLPS 231
             LQ LDLS   L         L  L     L+ L L+   L      LL   + +  P+
Sbjct: 81  CGLQELDLSDNALG--PDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPA 138

Query: 232 LKVLKLTKCQLCHFP-----PLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLR---NL 283
           L+ L L + +L           L AN   LK L+LA N   ++  +      GL+   NL
Sbjct: 139 LEKLVLGRNRLEGASCEALAKALRAN-RDLKELNLANNGIGDAGIRA--LAEGLKANCNL 195

Query: 284 VFIDLSSNQFQ----GQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWN 339
             +DL++N         +   L +L SL  L+L  N  N T  G                
Sbjct: 196 EVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN--NLTDAGAA-------------- 239

Query: 340 SLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCK----LTSVDLSLIDLSQDF 395
                ++S  L    S+ TL LS N  +        A +      L  +DL      ++ 
Sbjct: 240 ----ALASALLSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGNKFGEEG 294

Query: 396 SQVLDTFSSCGAYALESLDLSICQI 420
           +Q+L          LESL +     
Sbjct: 295 AQLLAESLLEPGNELESLWVKDDSF 319

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 48.3 bits (115), Expect = 9e-06
 Identities = 36/98 (36%), Positives = 48/98 (48%), Gaps = 6/98 (6%)

Query: 356 IETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDL 415
           I+ L L  N  L G IP   ++L  L S++LS   +  +    L + +S     LE LDL
Sbjct: 420 IDGLGLD-NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITS-----LEVLDL 473

Query: 416 SICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALG 453
           S    +G +   L Q  SL  L L  NSL G +P ALG
Sbjct: 474 SYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.9 bits (102), Expect = 1e-05
 Identities = 24/60 (40%), Positives = 30/60 (50%)

Query: 433 SLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKL 492
           +L +L+L +N L      A   L +LK LDLS N L    P +   L  L  LDLS N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 46.8 bits (111), Expect = 3e-05
 Identities = 29/78 (37%), Positives = 38/78 (48%), Gaps = 1/78 (1%)

Query: 111 RSKLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQ 170
           R++  G V   L  L  L+ L LS N   G +IP  L S + L  L+LS  + +G IP  
Sbjct: 484 RNQFSGAVPRKLGSLSELMQLKLSENKLSG-EIPDELSSCKKLVSLDLSHNQLSGQIPAS 542

Query: 171 LGNLSNLQYLDLSGTFLS 188
              +  L  LDLS   LS
Sbjct: 543 FSEMPVLSQLDLSQNQLS 560

Length = 968

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 44.2 bits (104), Expect = 1e-04
 Identities = 58/196 (29%), Positives = 86/196 (43%), Gaps = 20/196 (10%)

Query: 121 SLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYL 180
            L++L +L  LDL  N+   I     L    NL+ L+LS  K    +P  L NL NL+ L
Sbjct: 111 ELLELTNLTSLDLDNNNITDIPPLIGL-LKSNLKELDLSDNKIE-SLPSPLRNLPNLKNL 168

Query: 181 DLSGTFLSNYDLHVDSLSWLSGLY-MLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTK 239
           DLS          +  L  L      L +LDLS   +S     + + ++L  L +   + 
Sbjct: 169 DLSFN-------DLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSI 221

Query: 240 CQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPI 299
            +L        +N  +L  L L+ N  ++        +  L NL  +DLS+N  Q     
Sbjct: 222 IEL----LSSLSNLKNLSGLELSNNKLEDLP----ESIGNLSNLETLDLSNN--QISSIS 271

Query: 300 GLRNLTSLRHLDLRFN 315
            L +LT+LR LDL  N
Sbjct: 272 SLGSLTNLRELDLSGN 287

Length = 394

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 53/227 (23%), Positives = 81/227 (35%), Gaps = 28/227 (12%)

Query: 300 GLRNLTSLRHLDLRFNYFNSTTPGW---LSKFNDLEFLSVAWNSLQGTISSVGLENLTS- 355
           GL     L+ LDL  N       G    L + + L+ L +  N L      +  + L   
Sbjct: 76  GLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDL 135

Query: 356 ---IETLDLSGNS-KLGGKIPTS--FARLCKLTSVDLSLIDLSQDFSQVL--DTFSSCGA 407
              +E L L  N  +       +        L  ++L+   +     + L     ++C  
Sbjct: 136 PPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCN- 194

Query: 408 YALESLDLSICQI----SGHLTNQLLQFKSLHTLELGHNSLFGP-----LPPALGELSSL 458
             LE LDL+   +    +  L   L   KSL  L LG N+L            L    SL
Sbjct: 195 --LEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISL 252

Query: 459 KKLDLSNNML--NGFIPLS--LGKLSHLEYLDLSNNKLNASLSEIHF 501
             L LS N +  +G   L+  L +   L  LDL  NK     +++  
Sbjct: 253 LTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLA 299

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.1 bits (87), Expect = 0.001
 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 127 HLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGT 185
           +L  LDLS N    I        L NL+ L+LSG     + P     L +L+ LDLSG 
Sbjct: 1   NLKSLDLSNNRLTVIP-DGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.8 bits (86), Expect = 0.002
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 306 SLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNS 365
           +L+ LDL  N       G      +L+ L ++ N+L  +IS      L S+ +LDLSGN+
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNN 59

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 40.2 bits (94), Expect = 0.003
 Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 2/65 (3%)

Query: 322 PGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKL 381
           P  +SK   L+ ++++ NS++G I    L ++TS+E LDLS NS   G IP S  +L  L
Sbjct: 435 PNDISKLRHLQSINLSGNSIRGNI-PPSLGSITSLEVLDLSYNS-FNGSIPESLGQLTSL 492

Query: 382 TSVDL 386
             ++L
Sbjct: 493 RILNL 497

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 39.4 bits (92), Expect = 0.004
 Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 1/76 (1%)

Query: 108 NYERSKLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMI 167
               +KL G++   L   K L+ LDLS N   G QIP     +  L  L+LS  + +G I
Sbjct: 505 KLSENKLSGEIPDELSSCKKLVSLDLSHNQLSG-QIPASFSEMPVLSQLDLSQNQLSGEI 563

Query: 168 PLQLGNLSNLQYLDLS 183
           P  LGN+ +L  +++S
Sbjct: 564 PKNLGNVESLVQVNIS 579

Length = 968

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	552
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.98
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.96
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.96
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.93
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.93
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.92
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.86
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.85
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.83
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.81
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.76
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.75
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.75
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.74
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.63
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.58
PLN03150	623	hypothetical protein; Provisional	99.53
PLN03150	623	hypothetical protein; Provisional	99.16
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.15
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.11
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.1
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.09
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.08
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.07
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.04
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.04
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.02
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.01
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.99
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.97
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.94
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.87
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.84
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.72
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.69
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.68
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.66
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.59
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.57
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.5
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.35
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.32
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.24
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.2
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.16
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.13
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.02
KOG4341	483	consensus F-box protein containing LRR [General fu	97.96
KOG4341	483	consensus F-box protein containing LRR [General fu	97.94
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.9
PRK15386	426	type III secretion protein GogB; Provisional	97.85
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.84
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.8
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.78
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.69
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.55
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.54
PRK15386	426	type III secretion protein GogB; Provisional	97.49
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.97
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.92
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.78
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.77
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.75
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.68
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.67
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.83
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.07
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.05
KOG3864	221	consensus Uncharacterized conserved protein [Funct	91.77
KOG4308	478	consensus LRR-containing protein [Function unknown	91.1
KOG3864	221	consensus Uncharacterized conserved protein [Funct	90.07
KOG4308	478	consensus LRR-containing protein [Function unknown	89.16
KOG0473	326	consensus Leucine-rich repeat protein [Function un	85.92
smart00370	26	LRR Leucine-rich repeats, outliers.	85.87
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	85.87
KOG0473	326	consensus Leucine-rich repeat protein [Function un	84.75
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	83.68
smart00370	26	LRR Leucine-rich repeats, outliers.	83.68
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	82.4

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1e-55  Score=496.89  Aligned_cols=493  Identities=29%  Similarity=0.417  Sum_probs=347.4

Q ss_pred             cHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCcccCceEecCCCCcEEEEEcCCCCccCC-----CCchhhcccCccccC
Q 047285           38 IDSEREALLKLKQDLIDPSNRLASWNTGDGDCCKWAGVFCSNITGHVLQLSLQNPFSYLG-----GDLREVKAGSNYERS  112 (552)
Q Consensus        38 ~~~~~~~l~~~~~~~~~~~~~~~~W~~~~~~~c~w~gv~c~~~~~~v~~L~l~~~~~~~~-----~~l~~l~~~~~~~~~  112 (552)
                      .++|++||++||+++.+|.+.+.+|+. ..+||.|.||+|++ .++|+.|++++......     ..++.++.+ +...|
T Consensus        27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~-~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L-~Ls~n  103 (968)
T PLN00113         27 HAEELELLLSFKSSINDPLKYLSNWNS-SADVCLWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPYIQTI-NLSNN  103 (968)
T ss_pred             CHHHHHHHHHHHHhCCCCcccCCCCCC-CCCCCcCcceecCC-CCcEEEEEecCCCccccCChHHhCCCCCCEE-ECCCC
Confidence            357899999999999888888899986 67999999999985 67999999998654322     122333332 34456


Q ss_pred             ccccccCcccc-CCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCC-C
Q 047285          113 KLGGKVNPSLV-DLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSN-Y  190 (552)
Q Consensus       113 ~~~~~~~~~l~-~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~-~  190 (552)
                      .+.|.+|..+. .+++|++|++++|.+++ .+|.  +.+++|++|++++|.+++.+|..++++++|++|++++|.+.. +
T Consensus       104 ~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~-~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~  180 (968)
T PLN00113        104 QLSGPIPDDIFTTSSSLRYLNLSNNNFTG-SIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKI  180 (968)
T ss_pred             ccCCcCChHHhccCCCCCEEECcCCcccc-ccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccC
Confidence            77788887665 88889999988888876 3564  457788888888888887888888888888888888886542 2


Q ss_pred             ccccCCccccCCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCC
Q 047285          191 DLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSL  270 (552)
Q Consensus       191 ~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  270 (552)
                      |.      .+.++++|++|++++|.+.+  .++..+.++++|++|++++|.+.+..|..+.++++|++|++++|.+.+..
T Consensus       181 p~------~~~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~  252 (968)
T PLN00113        181 PN------SLTNLTSLEFLTLASNQLVG--QIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPI  252 (968)
T ss_pred             Ch------hhhhCcCCCeeeccCCCCcC--cCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceecccc
Confidence            21      26677777777777777765  45666677777777777777777777777777777777777777777766


Q ss_pred             ccccccccCCCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCcccc
Q 047285          271 FQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGL  350 (552)
Q Consensus       271 ~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l  350 (552)
                      |.   .+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|.. +
T Consensus       253 p~---~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~-~  328 (968)
T PLN00113        253 PS---SLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA-L  328 (968)
T ss_pred             Ch---hHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChh-H
Confidence            66   6667777777777777777777777777777777777777777777777777777777777777776666655 6


Q ss_pred             CCCCccCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccc-------------------cccccccCCCCCC
Q 047285          351 ENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQV-------------------LDTFSSCGAYALE  411 (552)
Q Consensus       351 ~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~-------------------~~~~~~~~~~~L~  411 (552)
                      ..+++|+.|++++|. +.+.+|..++.+++|+.++++.+.........                   ..+..+..+++|+
T Consensus       329 ~~l~~L~~L~L~~n~-l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~  407 (968)
T PLN00113        329 TSLPRLQVLQLWSNK-FSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLR  407 (968)
T ss_pred             hcCCCCCEEECcCCC-CcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCC
Confidence            666777777777776 66666666666666666666544322100000                   0111233445566


Q ss_pred             EEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCC-----------------------CCCCEEeCCCCcC
Q 047285          412 SLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGEL-----------------------SSLKKLDLSNNML  468 (552)
Q Consensus       412 ~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l-----------------------~~L~~L~L~~n~l  468 (552)
                      .|++++|.+++.+|..+..+++|+.|++++|++++.+|..+..+                       ++|+.|++++|++
T Consensus       408 ~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l  487 (968)
T PLN00113        408 RVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQF  487 (968)
T ss_pred             EEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCcc
Confidence            66666666665555555555555555555555554444433333                       4566666666666


Q ss_pred             CccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcccccEEecCCCCCCCCCCcc
Q 047285          469 NGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLGPHFPSW  548 (552)
Q Consensus       469 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~iP~~  548 (552)
                      ++.+|..+.++++|+.|++++|++.+.+|. .+.++++|++|+|++|.+++.+|..+..+++|+.|++++|+++|.+|..
T Consensus       488 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  566 (968)
T PLN00113        488 SGAVPRKLGSLSELMQLKLSENKLSGEIPD-ELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKN  566 (968)
T ss_pred             CCccChhhhhhhccCEEECcCCcceeeCCh-HHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChh
Confidence            666777777778888888888888888887 6788888888888888888888888888888888888888888888876


Q ss_pred             cc
Q 047285          549 LH  550 (552)
Q Consensus       549 l~  550 (552)
                      +.
T Consensus       567 l~  568 (968)
T PLN00113        567 LG  568 (968)
T ss_pred             Hh
Confidence            54

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.7e-47  Score=430.29  Aligned_cols=450  Identities=30%  Similarity=0.384  Sum_probs=344.0

Q ss_pred             CcEEEEEcCCCCccCC---CCchhhcccCccccCccccccCccccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeC
Q 047285           82 GHVLQLSLQNPFSYLG---GDLREVKAGSNYERSKLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNL  158 (552)
Q Consensus        82 ~~v~~L~l~~~~~~~~---~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L  158 (552)
                      .+++.|++++......   +.++.++.+ +...|.+.+.+|..++++++|++|++++|.+.+ .+|..++++++|++|++
T Consensus       118 ~~L~~L~Ls~n~l~~~~p~~~l~~L~~L-~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L  195 (968)
T PLN00113        118 SSLRYLNLSNNNFTGSIPRGSIPNLETL-DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVG-KIPNSLTNLTSLEFLTL  195 (968)
T ss_pred             CCCCEEECcCCccccccCccccCCCCEE-ECcCCcccccCChHHhcCCCCCEEECccCcccc-cCChhhhhCcCCCeeec
Confidence            4688888887654321   223333332 234467778888888889999999999888877 48888888889999999


Q ss_pred             CCCcCCCCCccccCCCCCCCEEeccCCCCCC-CccccCCccccCCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEc
Q 047285          159 SGAKFAGMIPLQLGNLSNLQYLDLSGTFLSN-YDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKL  237 (552)
Q Consensus       159 ~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l  237 (552)
                      ++|.+.+.+|..++++++|++|++++|.+.. +|.      .+..+++|++|++++|.+.+  .++..+.++++|++|++
T Consensus       196 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~------~l~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L  267 (968)
T PLN00113        196 ASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPY------EIGGLTSLNHLDLVYNNLTG--PIPSSLGNLKNLQYLFL  267 (968)
T ss_pred             cCCCCcCcCChHHcCcCCccEEECcCCccCCcCCh------hHhcCCCCCEEECcCceecc--ccChhHhCCCCCCEEEC
Confidence            8888888888888888889999888887653 221      36777888888888887766  45666777788888888


Q ss_pred             CCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCCccEEeccCccccccCchhhhcccCCcEEeccCCCC
Q 047285          238 TKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYF  317 (552)
Q Consensus       238 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l  317 (552)
                      ++|.+.+..|..+.++++|+.|++++|.+.+.+|.   ++..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+
T Consensus       268 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~---~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l  344 (968)
T PLN00113        268 YQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE---LVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKF  344 (968)
T ss_pred             cCCeeeccCchhHhhccCcCEEECcCCeeccCCCh---hHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCC
Confidence            88877777777777777888888887777777766   666777777777777777777777777777777777777777


Q ss_pred             CCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCcc
Q 047285          318 NSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQ  397 (552)
Q Consensus       318 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~  397 (552)
                      .+.+|..+..+++|+.|++++|.+.+.+|.. +..+++|+.|++++|. +.+.+|..+..+++|+.+++..+........
T Consensus       345 ~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~-~~~~~~L~~L~l~~n~-l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~  422 (968)
T PLN00113        345 SGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG-LCSSGNLFKLILFSNS-LEGEIPKSLGACRSLRRVRLQDNSFSGELPS  422 (968)
T ss_pred             cCcCChHHhCCCCCcEEECCCCeeEeeCChh-HhCcCCCCEEECcCCE-ecccCCHHHhCCCCCCEEECcCCEeeeECCh
Confidence            7777777777777777777777777666655 5555556666666655 5555555555555555555543332211000


Q ss_pred             -------------------ccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCC
Q 047285          398 -------------------VLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSL  458 (552)
Q Consensus       398 -------------------~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  458 (552)
                                         ...+.....+++|+.|++++|.+.+.+|..+ ..++|+.|++++|++++.+|..+..+++|
T Consensus       423 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L  501 (968)
T PLN00113        423 EFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSEL  501 (968)
T ss_pred             hHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhcc
Confidence                               0011122356678888888888877777654 45789999999999999999999999999


Q ss_pred             CEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcccccEEecCC
Q 047285          459 KKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRS  538 (552)
Q Consensus       459 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~  538 (552)
                      +.|++++|.+.+.+|..+.++++|++|+|++|.+++.+|. .+..+++|+.|++++|++.+.+|..+..+.+|+.+++++
T Consensus       502 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~  580 (968)
T PLN00113        502 MQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPA-SFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISH  580 (968)
T ss_pred             CEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCCh-hHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccC
Confidence            9999999999999999999999999999999999999998 899999999999999999999999999999999999999


Q ss_pred             CCCCCCCCcc
Q 047285          539 CHLGPHFPSW  548 (552)
Q Consensus       539 n~~~~~iP~~  548 (552)
                      |++.|.+|+.
T Consensus       581 N~l~~~~p~~  590 (968)
T PLN00113        581 NHLHGSLPST  590 (968)
T ss_pred             CcceeeCCCc
Confidence            9999999964

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=2.3e-37  Score=298.11  Aligned_cols=366  Identities=28%  Similarity=0.287  Sum_probs=282.3

Q ss_pred             CCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCCCCC
Q 047285          127 HLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYML  206 (552)
Q Consensus       127 ~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L  206 (552)
                      .-+.||+++|++..+ -+..|.++++|+.+++.+|.++ .+|...+...+|+.|+|.+|.|+++....     +..++.|
T Consensus        79 ~t~~LdlsnNkl~~i-d~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~-----L~~l~al  151 (873)
T KOG4194|consen   79 QTQTLDLSNNKLSHI-DFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEE-----LSALPAL  151 (873)
T ss_pred             ceeeeeccccccccC-cHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHH-----HHhHhhh
Confidence            456789999988874 5677888999999999999887 78877777777999999988887765432     6677788


Q ss_pred             CEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCCccEE
Q 047285          207 EHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFI  286 (552)
Q Consensus       207 ~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L  286 (552)
                      +.||||.|.++.++.  ..+..-.++++|++++|.++..-...|..+.+|..|.+++|.++...+.   .|.++++|+.|
T Consensus       152 rslDLSrN~is~i~~--~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r---~Fk~L~~L~~L  226 (873)
T KOG4194|consen  152 RSLDLSRNLISEIPK--PSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQR---SFKRLPKLESL  226 (873)
T ss_pred             hhhhhhhchhhcccC--CCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHH---Hhhhcchhhhh
Confidence            888888887776421  2233445788888888888877777777777888888888877765555   56667788888


Q ss_pred             eccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCCCC
Q 047285          287 DLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSK  366 (552)
Q Consensus       287 ~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~  366 (552)
                      +|..|.+.-.---.|..+++|+.|.+..|.+.......|..+.++++|+++.|+++ .+....+.++++|+.|++++|. 
T Consensus       227 dLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~-~vn~g~lfgLt~L~~L~lS~Na-  304 (873)
T KOG4194|consen  227 DLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ-AVNEGWLFGLTSLEQLDLSYNA-  304 (873)
T ss_pred             hccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhh-hhhcccccccchhhhhccchhh-
Confidence            88887775322345677788888888888877777777777888888888888777 3333336677888888888886 


Q ss_pred             CCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccC
Q 047285          367 LGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFG  446 (552)
Q Consensus       367 l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~  446 (552)
                      +...-++.|...                             ++|++|+|++|+++...+..|..+..|++|.|++|.+..
T Consensus       305 I~rih~d~Wsft-----------------------------qkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~  355 (873)
T KOG4194|consen  305 IQRIHIDSWSFT-----------------------------QKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDH  355 (873)
T ss_pred             hheeecchhhhc-----------------------------ccceeEeccccccccCChhHHHHHHHhhhhcccccchHH
Confidence            544444444433                             489999999999998888889889999999999999885


Q ss_pred             CCcccccCCCCCCEEeCCCCcCCccCcc---cccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCC
Q 047285          447 PLPPALGELSSLKKLDLSNNMLNGFIPL---SLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNP  523 (552)
Q Consensus       447 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~  523 (552)
                      .-...|..+.+|++|||++|.+...+.+   .|.++++|+.|.+.+|++ ..||...|.+++.|++|+|.+|.+...-|.
T Consensus       356 l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNql-k~I~krAfsgl~~LE~LdL~~NaiaSIq~n  434 (873)
T KOG4194|consen  356 LAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQL-KSIPKRAFSGLEALEHLDLGDNAIASIQPN  434 (873)
T ss_pred             HHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCcee-eecchhhhccCcccceecCCCCcceeeccc
Confidence            5556788889999999999988755433   467789999999999999 778888999999999999999999988888


Q ss_pred             CCcCcccccEEecC
Q 047285          524 NWVPPFQLETLQLR  537 (552)
Q Consensus       524 ~~~~~~~L~~L~l~  537 (552)
                      .|..+ +|+.|-+.
T Consensus       435 AFe~m-~Lk~Lv~n  447 (873)
T KOG4194|consen  435 AFEPM-ELKELVMN  447 (873)
T ss_pred             ccccc-hhhhhhhc
Confidence            88887 88888774

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-36  Score=292.56  Aligned_cols=370  Identities=25%  Similarity=0.312  Sum_probs=316.0

Q ss_pred             ccccCccccccCccccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCC
Q 047285          108 NYERSKLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFL  187 (552)
Q Consensus       108 ~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l  187 (552)
                      ++++|.+...-+..|.++++|+.+++.+|.++  .+|...+...+|+.|+|..|.|+..-.+.+..++.|++|||+.|.|
T Consensus        84 dlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt--~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~i  161 (873)
T KOG4194|consen   84 DLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT--RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLI  161 (873)
T ss_pred             eccccccccCcHHHHhcCCcceeeeeccchhh--hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchh
Confidence            34446666666677899999999999999999  6899888889999999999999987778899999999999999999


Q ss_pred             CCCccccCCccccCCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCC
Q 047285          188 SNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFD  267 (552)
Q Consensus       188 ~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~  267 (552)
                      ++++...     +..-.++++|+|++|.|++.  -...+.++.+|..|.+++|.++..++..|.++++|+.|++.+|.+.
T Consensus       162 s~i~~~s-----fp~~~ni~~L~La~N~It~l--~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir  234 (873)
T KOG4194|consen  162 SEIPKPS-----FPAKVNIKKLNLASNRITTL--ETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR  234 (873)
T ss_pred             hcccCCC-----CCCCCCceEEeecccccccc--ccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccccee
Confidence            9887643     67778999999999999985  3455677889999999999999999999999999999999999987


Q ss_pred             CCCccccccccCCCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCc
Q 047285          268 NSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISS  347 (552)
Q Consensus       268 ~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~  347 (552)
                      -....   .|..+++|+.|.+..|++.......|-.+.++++|+++.|+++..-..++.+++.|+.|++++|.+. .+..
T Consensus       235 ive~l---tFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~-rih~  310 (873)
T KOG4194|consen  235 IVEGL---TFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQ-RIHI  310 (873)
T ss_pred             eehhh---hhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhh-eeec
Confidence            55433   6778999999999999998776778888999999999999999988899999999999999999998 4444


Q ss_pred             cccCCCCccCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchh
Q 047285          348 VGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQ  427 (552)
Q Consensus       348 ~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~  427 (552)
                      ..++..++|+.|++++|. ++..-+..|..+.                             .|++|.|++|.++......
T Consensus       311 d~WsftqkL~~LdLs~N~-i~~l~~~sf~~L~-----------------------------~Le~LnLs~Nsi~~l~e~a  360 (873)
T KOG4194|consen  311 DSWSFTQKLKELDLSSNR-ITRLDEGSFRVLS-----------------------------QLEELNLSHNSIDHLAEGA  360 (873)
T ss_pred             chhhhcccceeEeccccc-cccCChhHHHHHH-----------------------------HhhhhcccccchHHHHhhH
Confidence            448889999999999998 7766666666665                             7889999999988777777


Q ss_pred             hcCCCCCcEEECCCCcccCCC---cccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcC
Q 047285          428 LLQFKSLHTLELGHNSLFGPL---PPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNL  504 (552)
Q Consensus       428 l~~l~~L~~L~L~~n~l~~~~---~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l  504 (552)
                      |..+++|++|||++|.+...+   ...|..+++|+.|++.+|++....-..|.++++|+.|+|.+|.+-...|. .|..+
T Consensus       361 f~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~n-AFe~m  439 (873)
T KOG4194|consen  361 FVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPN-AFEPM  439 (873)
T ss_pred             HHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeeccc-ccccc
Confidence            888899999999999887543   34567899999999999999844445688899999999999999666666 88888


Q ss_pred             CCCCEEEccCCeeeEEcC
Q 047285          505 TKLTWFSASGNSLILKFN  522 (552)
Q Consensus       505 ~~L~~L~L~~n~~~~~~~  522 (552)
                       .|++|.+..-.+.+.+-
T Consensus       440 -~Lk~Lv~nSssflCDCq  456 (873)
T KOG4194|consen  440 -ELKELVMNSSSFLCDCQ  456 (873)
T ss_pred             -hhhhhhhcccceEEecc
Confidence             89999888877776654

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.98  E-value=1.2e-34  Score=281.45  Aligned_cols=370  Identities=26%  Similarity=0.359  Sum_probs=263.7

Q ss_pred             cCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCC
Q 047285          123 VDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSG  202 (552)
Q Consensus       123 ~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~  202 (552)
                      +-++.+|-.|+++|.|+|..+|.....+++++-|.|.+.++. .+|+.++.+.+|++|.+++|++..+...      ++.
T Consensus         4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vhGE------Ls~   76 (1255)
T KOG0444|consen    4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVHGE------LSD   76 (1255)
T ss_pred             cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhhhh------hcc
Confidence            345666777888888877678887778888888888887776 6788888888888888888776655433      666


Q ss_pred             CCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCC
Q 047285          203 LYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRN  282 (552)
Q Consensus       203 l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~  282 (552)
                      ++.|+.+.+..|++... .+|..+-.+..|+.|+++.|++... |..+..-+++-+|++++|++......   .+.+++.
T Consensus        77 Lp~LRsv~~R~N~LKns-GiP~diF~l~dLt~lDLShNqL~Ev-P~~LE~AKn~iVLNLS~N~IetIPn~---lfinLtD  151 (1255)
T KOG0444|consen   77 LPRLRSVIVRDNNLKNS-GIPTDIFRLKDLTILDLSHNQLREV-PTNLEYAKNSIVLNLSYNNIETIPNS---LFINLTD  151 (1255)
T ss_pred             chhhHHHhhhccccccC-CCCchhcccccceeeecchhhhhhc-chhhhhhcCcEEEEcccCccccCCch---HHHhhHh
Confidence            77777777777777654 5666677777777888888777654 34455566777778887777765555   5567777


Q ss_pred             ccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccce-eecCccccCCCCccCEEeC
Q 047285          283 LVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQ-GTISSVGLENLTSIETLDL  361 (552)
Q Consensus       283 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~l~~l~~L~~L~l  361 (552)
                      |-.|+|++|.+. .+|..+..+..|++|++++|.+.-.-...+..+++|+.|.+++.+-+ ..+|.. +..+.+|..+|+
T Consensus       152 LLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pts-ld~l~NL~dvDl  229 (1255)
T KOG0444|consen  152 LLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTS-LDDLHNLRDVDL  229 (1255)
T ss_pred             Hhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCc-hhhhhhhhhccc
Confidence            778888888776 56666777788888888887765444444556667777777776533 355665 777778888888


Q ss_pred             CCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCC
Q 047285          362 SGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGH  441 (552)
Q Consensus       362 ~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~  441 (552)
                      +.|. +. .+|+.+..+++|+.+.++.+.+..-..      ......+|++|++|.|+++ .+|+.++.+++|+.|.+.+
T Consensus       230 S~N~-Lp-~vPecly~l~~LrrLNLS~N~iteL~~------~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~  300 (1255)
T KOG0444|consen  230 SENN-LP-IVPECLYKLRNLRRLNLSGNKITELNM------TEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANN  300 (1255)
T ss_pred             cccC-CC-cchHHHhhhhhhheeccCcCceeeeec------cHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhcc
Confidence            8876 54 677777777766666665444332100      0111236788888888887 5777888888888888888


Q ss_pred             Cccc-CCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeee
Q 047285          442 NSLF-GPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLI  518 (552)
Q Consensus       442 n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~  518 (552)
                      |+++ +-+|..++.+..|+++..++|.+. .+|+.+..|+.|+.|.|+.|++ -++|+ .+.-++.|+.||+..|+-.
T Consensus       301 NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrL-iTLPe-aIHlL~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  301 NKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRL-ITLPE-AIHLLPDLKVLDLRENPNL  375 (1255)
T ss_pred             CcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccccce-eechh-hhhhcCCcceeeccCCcCc
Confidence            8876 457788888888888888888876 6788888888888888888887 45676 6777888888888888754

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.97  E-value=2.5e-34  Score=265.60  Aligned_cols=393  Identities=27%  Similarity=0.329  Sum_probs=258.5

Q ss_pred             cCccccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCc
Q 047285          118 VNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSL  197 (552)
Q Consensus       118 ~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~  197 (552)
                      +|+.+..+..|+.|+.++|.+.  .+|+.++.+..|+.++..+|+++ .+|..++++.+|..+++.+|.+...|..    
T Consensus       106 lp~~i~s~~~l~~l~~s~n~~~--el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~----  178 (565)
T KOG0472|consen  106 LPEQIGSLISLVKLDCSSNELK--ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPEN----  178 (565)
T ss_pred             ccHHHhhhhhhhhhhcccccee--ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHH----
Confidence            3444444444444444444444  34444444444444444444444 3444444444444444444444443322    


Q ss_pred             cccCCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccc
Q 047285          198 SWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWV  277 (552)
Q Consensus       198 ~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~  277 (552)
                        .-+++.|+++|+..|-++.   +|..++.+.+|..|++..|++...+  .|..++.|.++.++.|++.-....   ..
T Consensus       179 --~i~m~~L~~ld~~~N~L~t---lP~~lg~l~~L~~LyL~~Nki~~lP--ef~gcs~L~Elh~g~N~i~~lpae---~~  248 (565)
T KOG0472|consen  179 --HIAMKRLKHLDCNSNLLET---LPPELGGLESLELLYLRRNKIRFLP--EFPGCSLLKELHVGENQIEMLPAE---HL  248 (565)
T ss_pred             --HHHHHHHHhcccchhhhhc---CChhhcchhhhHHHHhhhcccccCC--CCCccHHHHHHHhcccHHHhhHHH---Hh
Confidence              2336677777777777765   5677777888888888888876655  677888888888887776643333   44


Q ss_pred             cCCCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccc--------
Q 047285          278 FGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVG--------  349 (552)
Q Consensus       278 ~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~--------  349 (552)
                      .+++.+.+||+++|+++ +.|+.+..+.+|++||+++|.+++ .|..++++ +|+.|-+.+|.+. ++....        
T Consensus       249 ~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~-Lp~sLgnl-hL~~L~leGNPlr-TiRr~ii~~gT~~v  324 (565)
T KOG0472|consen  249 KHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISS-LPYSLGNL-HLKFLALEGNPLR-TIRREIISKGTQEV  324 (565)
T ss_pred             cccccceeeeccccccc-cCchHHHHhhhhhhhcccCCcccc-CCcccccc-eeeehhhcCCchH-HHHHHHHcccHHHH
Confidence            57888888999999887 778888888889999999988875 45668888 8888888888764 111110        


Q ss_pred             ---------------------------------cCCCCccCEEeCCCCCCCCCCCchhHhhccc-CceeecccccCCCCC
Q 047285          350 ---------------------------------LENLTSIETLDLSGNSKLGGKIPTSFARLCK-LTSVDLSLIDLSQDF  395 (552)
Q Consensus       350 ---------------------------------l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~-L~~l~l~~~~~~~~~  395 (552)
                                                       .....+.+.|++++-+ ++ .+|..+....+ =-.-.+.++.+....
T Consensus       325 LKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~q-lt-~VPdEVfea~~~~~Vt~VnfskNqL~e  402 (565)
T KOG0472|consen  325 LKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQ-LT-LVPDEVFEAAKSEIVTSVNFSKNQLCE  402 (565)
T ss_pred             HHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccc-cc-cCCHHHHHHhhhcceEEEecccchHhh
Confidence                                             0111234445555443 33 33333322221 002222222222211


Q ss_pred             ccccccccccCCCC-CCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcc
Q 047285          396 SQVLDTFSSCGAYA-LESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPL  474 (552)
Q Consensus       396 ~~~~~~~~~~~~~~-L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~  474 (552)
                      .|.-.    ..+.. .+.+.+++|.+ +.+|..++.+++|..|++++|-+. .+|..++.+..|+.|+++.|+|. .+|.
T Consensus       403 lPk~L----~~lkelvT~l~lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~  475 (565)
T KOG0472|consen  403 LPKRL----VELKELVTDLVLSNNKI-SFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPE  475 (565)
T ss_pred             hhhhh----HHHHHHHHHHHhhcCcc-ccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchH
Confidence            11100    00111 22344455444 467778889999999999999887 88999999999999999999988 7898


Q ss_pred             cccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcccccEEecCCCCCC
Q 047285          475 SLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLG  542 (552)
Q Consensus       475 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~  542 (552)
                      .+..+..++++-.++|++ +.++...+.++.+|..|||.+|.+. .+|+.+++|.+|+.|+++||+|.
T Consensus       476 ~~y~lq~lEtllas~nqi-~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  476 CLYELQTLETLLASNNQI-GSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             HHhhHHHHHHHHhccccc-cccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            888888899998888999 6666647999999999999999987 77889999999999999999998

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=1.5e-33  Score=273.78  Aligned_cols=345  Identities=25%  Similarity=0.321  Sum_probs=244.8

Q ss_pred             ccCccccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCC-CCCccccCCCCCCCEEeccCCCCCCCccccC
Q 047285          117 KVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFA-GMIPLQLGNLSNLQYLDLSGTFLSNYDLHVD  195 (552)
Q Consensus       117 ~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~-~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~  195 (552)
                      .+|+.++.+.+|++|.+++|++.  .+-..++.++.|+.++++.|++. ..+|..|.++..|..|||++|++.+.|..  
T Consensus        46 ~vPeEL~~lqkLEHLs~~HN~L~--~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~--  121 (1255)
T KOG0444|consen   46 QVPEELSRLQKLEHLSMAHNQLI--SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTN--  121 (1255)
T ss_pred             hChHHHHHHhhhhhhhhhhhhhH--hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchh--
Confidence            45666777777777777777666  34556666777777777777653 24666777777777777777777776654  


Q ss_pred             CccccCCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccc
Q 047285          196 SLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGS  275 (552)
Q Consensus       196 ~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~  275 (552)
                          +..-+++-.|+||+|+|.+++.  ..+-+++.|-.|+++.|.+...+| ....+..|+.|++++|.+.-.-..   
T Consensus       122 ----LE~AKn~iVLNLS~N~IetIPn--~lfinLtDLLfLDLS~NrLe~LPP-Q~RRL~~LqtL~Ls~NPL~hfQLr---  191 (1255)
T KOG0444|consen  122 ----LEYAKNSIVLNLSYNNIETIPN--SLFINLTDLLFLDLSNNRLEMLPP-QIRRLSMLQTLKLSNNPLNHFQLR---  191 (1255)
T ss_pred             ----hhhhcCcEEEEcccCccccCCc--hHHHhhHhHhhhccccchhhhcCH-HHHHHhhhhhhhcCCChhhHHHHh---
Confidence                5566677777777777776432  233466667777777777654444 345667777777777765432222   


Q ss_pred             cccCCCCccEEeccCcccc-ccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCC
Q 047285          276 WVFGLRNLVFIDLSSNQFQ-GQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLT  354 (552)
Q Consensus       276 ~~~~l~~L~~L~L~~n~~~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~  354 (552)
                      .+..+++|++|.+++.+-+ ..+|.++..+.+|..+|++.|.+. .+|+.+.++++|+.|++++|+++ .+... .+...
T Consensus       192 QLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~-~~~W~  268 (1255)
T KOG0444|consen  192 QLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMT-EGEWE  268 (1255)
T ss_pred             cCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeecc-HHHHh
Confidence            3445667777777776433 346777777888888888888775 45777788888888888888877 44333 55667


Q ss_pred             ccCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCc-ccCchhhcCCCC
Q 047285          355 SIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQIS-GHLTNQLLQFKS  433 (552)
Q Consensus       355 ~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~-~~~~~~l~~l~~  433 (552)
                      +|++|+++.|+ ++ .+|..++.++                             .|+.|.+.+|+++ .-+|..++.+.+
T Consensus       269 ~lEtLNlSrNQ-Lt-~LP~avcKL~-----------------------------kL~kLy~n~NkL~FeGiPSGIGKL~~  317 (1255)
T KOG0444|consen  269 NLETLNLSRNQ-LT-VLPDAVCKLT-----------------------------KLTKLYANNNKLTFEGIPSGIGKLIQ  317 (1255)
T ss_pred             hhhhhccccch-hc-cchHHHhhhH-----------------------------HHHHHHhccCcccccCCccchhhhhh
Confidence            78888888887 65 6777777776                             6777777777765 347889999999


Q ss_pred             CcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEc
Q 047285          434 LHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSA  512 (552)
Q Consensus       434 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L  512 (552)
                      |+.+..++|.+. ..|+.+..|+.|+.|.|+.|++. .+|+.+.-++.|+.|++..|+-.-..|. .-..-++|+.-++
T Consensus       318 Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPK-P~da~~~lefYNI  393 (1255)
T KOG0444|consen  318 LEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPK-PNDARKKLEFYNI  393 (1255)
T ss_pred             hHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCC-cchhhhcceeeec
Confidence            999999999987 89999999999999999999987 7999999999999999999976444443 1122245554444

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.96  E-value=2.4e-33  Score=259.20  Aligned_cols=406  Identities=26%  Similarity=0.301  Sum_probs=272.5

Q ss_pred             ccCccccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCC
Q 047285          117 KVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDS  196 (552)
Q Consensus       117 ~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~  196 (552)
                      ++|++++.+..++.|+.++|++.  .+|+.++.+..|+.++.++|.+. .+|+.++.+..|+.++..+|.+..+|..   
T Consensus        82 ~lp~aig~l~~l~~l~vs~n~ls--~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~slp~~---  155 (565)
T KOG0472|consen   82 QLPAAIGELEALKSLNVSHNKLS--ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQISSLPED---  155 (565)
T ss_pred             hCCHHHHHHHHHHHhhcccchHh--hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccccccccCchH---
Confidence            56677777777777777777777  57777777777777777777776 5677777777777777777777776644   


Q ss_pred             ccccCCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCcccccc
Q 047285          197 LSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSW  276 (552)
Q Consensus       197 ~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~  276 (552)
                         +..+.+|..+++.+|++...   +...-+++.|++|+...|.+. .+|..++.+.+|+.|++.+|.+....     .
T Consensus       156 ---~~~~~~l~~l~~~~n~l~~l---~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~~lP-----e  223 (565)
T KOG0472|consen  156 ---MVNLSKLSKLDLEGNKLKAL---PENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIRFLP-----E  223 (565)
T ss_pred             ---HHHHHHHHHhhccccchhhC---CHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccccCC-----C
Confidence               56667777777888777653   333334778888887777664 44556778888888888888776432     5


Q ss_pred             ccCCCCccEEeccCccccccCchhhh-cccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCc
Q 047285          277 VFGLRNLVFIDLSSNQFQGQIPIGLR-NLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTS  355 (552)
Q Consensus       277 ~~~l~~L~~L~L~~n~~~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~  355 (552)
                      |..+..|++++++.|++. .+|.... .++++..||+.+|+++ ..|..+..+.+|++|++++|.++ .+|.. ++++ .
T Consensus       224 f~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~s-Lgnl-h  298 (565)
T KOG0472|consen  224 FPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYS-LGNL-H  298 (565)
T ss_pred             CCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcc-cccc-e
Confidence            667888888888888887 5555544 7888888888888886 45667777888888888888888 56665 8888 8


Q ss_pred             cCEEeCCCCCCCCCCCchhHhhccc---Cceee-------cccccCCCCCcccccc---ccccCCCCCCEEEccCCcCcc
Q 047285          356 IETLDLSGNSKLGGKIPTSFARLCK---LTSVD-------LSLIDLSQDFSQVLDT---FSSCGAYALESLDLSICQISG  422 (552)
Q Consensus       356 L~~L~l~~n~~l~~~~~~~~~~l~~---L~~l~-------l~~~~~~~~~~~~~~~---~~~~~~~~L~~L~ls~n~~~~  422 (552)
                      |+.|.+.+|+ +. .+-..+-+.+.   |+++.       ++..............   .......+.+.|++++-+++.
T Consensus       299 L~~L~leGNP-lr-TiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~  376 (565)
T KOG0472|consen  299 LKFLALEGNP-LR-TIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTL  376 (565)
T ss_pred             eeehhhcCCc-hH-HHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccccccccc
Confidence            8888888887 43 12111111110   01110       1111000000000001   111223355666666666663


Q ss_pred             cCchhhcCCC---CCcEEECCCCccc-----------------------CCCcccccCCCCCCEEeCCCCcCCccCcccc
Q 047285          423 HLTNQLLQFK---SLHTLELGHNSLF-----------------------GPLPPALGELSSLKKLDLSNNMLNGFIPLSL  476 (552)
Q Consensus       423 ~~~~~l~~l~---~L~~L~L~~n~l~-----------------------~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~  476 (552)
                       +|+....-.   -.+..+++.|++.                       +-+|..+..+++|..|++++|.+. .+|..+
T Consensus       377 -VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~  454 (565)
T KOG0472|consen  377 -VPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEM  454 (565)
T ss_pred             -CCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhh
Confidence             333222221   2455555555543                       245566677888888888888877 688888


Q ss_pred             cCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcccccEEecCCCCCCCCCCcccccC
Q 047285          477 GKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLGPHFPSWLHSQ  552 (552)
Q Consensus       477 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~iP~~l~~~  552 (552)
                      +.+..|+.|+++.|++ ..+|+ .+.....++.+-.++|++...-|..+..+.+|+.||+.+|.++ .||..+++.
T Consensus       455 ~~lv~Lq~LnlS~NrF-r~lP~-~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~Lgnm  527 (565)
T KOG0472|consen  455 GSLVRLQTLNLSFNRF-RMLPE-CLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNM  527 (565)
T ss_pred             hhhhhhheeccccccc-ccchH-HHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccc
Confidence            8888888888888888 66777 5555566666666677777555556889999999999999999 999988763

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.96  E-value=2.1e-31  Score=270.19  Aligned_cols=397  Identities=28%  Similarity=0.357  Sum_probs=273.4

Q ss_pred             ccccccCccccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCcc
Q 047285          113 KLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDL  192 (552)
Q Consensus       113 ~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~  192 (552)
                      +..+.+|..+..+.+|+.|+++.|.+.  ..|...+++.+|+++.|.+|.+. .+|..+..+.+|++|+++.|.++.+|.
T Consensus        55 n~~~~fp~~it~l~~L~~ln~s~n~i~--~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~~~Pl  131 (1081)
T KOG0618|consen   55 NQISSFPIQITLLSHLRQLNLSRNYIR--SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFGPIPL  131 (1081)
T ss_pred             cccccCCchhhhHHHHhhcccchhhHh--hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccCCCch
Confidence            455667777777778888888887777  46777777788888888777776 677777788888888888877776663


Q ss_pred             ccCC--------------ccccCCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCC-----
Q 047285          193 HVDS--------------LSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANF-----  253 (552)
Q Consensus       193 ~~~~--------------~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l-----  253 (552)
                      ....              +..++... .+++++..|.+.+  .++.....+.+  .|++++|.+...   .+..+     
T Consensus       132 ~i~~lt~~~~~~~s~N~~~~~lg~~~-ik~~~l~~n~l~~--~~~~~i~~l~~--~ldLr~N~~~~~---dls~~~~l~~  203 (1081)
T KOG0618|consen  132 VIEVLTAEEELAASNNEKIQRLGQTS-IKKLDLRLNVLGG--SFLIDIYNLTH--QLDLRYNEMEVL---DLSNLANLEV  203 (1081)
T ss_pred             hHHhhhHHHHHhhhcchhhhhhcccc-chhhhhhhhhccc--chhcchhhhhe--eeecccchhhhh---hhhhccchhh
Confidence            2110              01111111 4444444444443  33333333333  456666554411   11222     


Q ss_pred             ---------------CCCceeecCCCCCCCCCccccccccCCCCccEEeccCccccccCchhhhcccCCcEEeccCCCCC
Q 047285          254 ---------------SSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFN  318 (552)
Q Consensus       254 ---------------~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~  318 (552)
                                     ++++.|+.++|.++...     ......+|++++++.|.++ .+|.+++.+.+|+.+.+.+|.++
T Consensus       204 l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~-----~~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~  277 (1081)
T KOG0618|consen  204 LHCERNQLSELEISGPSLTALYADHNPLTTLD-----VHPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV  277 (1081)
T ss_pred             hhhhhcccceEEecCcchheeeeccCcceeec-----cccccccceeeecchhhhh-cchHHHHhcccceEecccchhHH
Confidence                           34555555555555222     1234567888888888887 56688888888888888888884


Q ss_pred             CCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCCCCCCCCCchhHhhccc--CceeecccccCCCCCc
Q 047285          319 STTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCK--LTSVDLSLIDLSQDFS  396 (552)
Q Consensus       319 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~--L~~l~l~~~~~~~~~~  396 (552)
                       .+|..+....+|+.|.+..|++. .+|.. .+..+.|++|++..|. +. ..|+.+.....  ++.+..+  .+.....
T Consensus       278 -~lp~ri~~~~~L~~l~~~~nel~-yip~~-le~~~sL~tLdL~~N~-L~-~lp~~~l~v~~~~l~~ln~s--~n~l~~l  350 (1081)
T KOG0618|consen  278 -ALPLRISRITSLVSLSAAYNELE-YIPPF-LEGLKSLRTLDLQSNN-LP-SLPDNFLAVLNASLNTLNVS--SNKLSTL  350 (1081)
T ss_pred             -hhHHHHhhhhhHHHHHhhhhhhh-hCCCc-ccccceeeeeeehhcc-cc-ccchHHHhhhhHHHHHHhhh--hcccccc
Confidence             55666677778888888888887 67776 7778999999999997 54 55554433221  1222222  2222222


Q ss_pred             cccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccc
Q 047285          397 QVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSL  476 (552)
Q Consensus       397 ~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~  476 (552)
                      +   ...-...+.|+.|++.+|.++......+.++++|+.|+|++|++..-....+.+++.|++|+||+|+++ .+|.++
T Consensus       351 p---~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tv  426 (1081)
T KOG0618|consen  351 P---SYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTV  426 (1081)
T ss_pred             c---cccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHH
Confidence            2   122223457999999999999988889999999999999999998433345688999999999999998 789999


Q ss_pred             cCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcccccEEecCCCC
Q 047285          477 GKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCH  540 (552)
Q Consensus       477 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~  540 (552)
                      .+++.|++|...+|++ ...|+  +..+++|+.+|++.|.++...-+.-...++|++||++||.
T Consensus       427 a~~~~L~tL~ahsN~l-~~fPe--~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  427 ANLGRLHTLRAHSNQL-LSFPE--LAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             HhhhhhHHHhhcCCce-eechh--hhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence            9999999999999999 56775  8899999999999999885433333333799999999996

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.93  E-value=3.8e-28  Score=246.77  Aligned_cols=382  Identities=29%  Similarity=0.314  Sum_probs=274.4

Q ss_pred             ccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccC
Q 047285          122 LVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLS  201 (552)
Q Consensus       122 l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~  201 (552)
                      +.+.-+|+.||+++|.+.  .+|..+..+++|+.|++++|.+. ..|....++.+|+++.|.+|.+..+|..      +.
T Consensus        41 ~~~~v~L~~l~lsnn~~~--~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~~lP~~------~~  111 (1081)
T KOG0618|consen   41 VEKRVKLKSLDLSNNQIS--SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQSLPAS------IS  111 (1081)
T ss_pred             hhheeeeEEeeccccccc--cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhhcCchh------HH
Confidence            344455999999999998  68999999999999999999987 6789999999999999999998888765      78


Q ss_pred             CCCCCCEEeCCCCcCCCCcchhhhcCCCCC-------------------CCEEEcCCCCCCCCCCCcccCCCCCceeecC
Q 047285          202 GLYMLEHLDLSQMNLSKASDWLLVTNSLPS-------------------LKVLKLTKCQLCHFPPLLSANFSSLKALHLA  262 (552)
Q Consensus       202 ~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~-------------------L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~  262 (552)
                      .+++|+.|++++|.+...+..   +..++.                   ++.+++..|.+.+..+.....+.+  .|++.
T Consensus       112 ~lknl~~LdlS~N~f~~~Pl~---i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr  186 (1081)
T KOG0618|consen  112 ELKNLQYLDLSFNHFGPIPLV---IEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLR  186 (1081)
T ss_pred             hhhcccccccchhccCCCchh---HHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecc
Confidence            899999999999998875432   222333                   445555555555555554444444  57777


Q ss_pred             CCCCCCCCccccccccCCCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccce
Q 047285          263 INNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQ  342 (552)
Q Consensus       263 ~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  342 (552)
                      +|.+. ..     .+..+++|+.+....|++....    -.-++++.|+.++|.++...+.  .-..+|++++++.|+++
T Consensus       187 ~N~~~-~~-----dls~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~  254 (1081)
T KOG0618|consen  187 YNEME-VL-----DLSNLANLEVLHCERNQLSELE----ISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS  254 (1081)
T ss_pred             cchhh-hh-----hhhhccchhhhhhhhcccceEE----ecCcchheeeeccCcceeeccc--cccccceeeecchhhhh
Confidence            77665 21     3445666666666666654211    1125666667777666633221  12246777777777777


Q ss_pred             eecCccccCCCCccCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcc
Q 047285          343 GTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISG  422 (552)
Q Consensus       343 ~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~  422 (552)
                       .+|.+ ++.+.+|+.++..+|. + ..+|..+....+|+.+.+..........      ...+...|++|+|..|.+..
T Consensus       255 -~lp~w-i~~~~nle~l~~n~N~-l-~~lp~ri~~~~~L~~l~~~~nel~yip~------~le~~~sL~tLdL~~N~L~~  324 (1081)
T KOG0618|consen  255 -NLPEW-IGACANLEALNANHNR-L-VALPLRISRITSLVSLSAAYNELEYIPP------FLEGLKSLRTLDLQSNNLPS  324 (1081)
T ss_pred             -cchHH-HHhcccceEecccchh-H-HhhHHHHhhhhhHHHHHhhhhhhhhCCC------cccccceeeeeeehhccccc
Confidence             56655 7777777777777776 5 3566666666655555444333322111      11234567777777777653


Q ss_pred             cCchhh-------------------------cCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCccccc
Q 047285          423 HLTNQL-------------------------LQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLG  477 (552)
Q Consensus       423 ~~~~~l-------------------------~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~  477 (552)
                      ..+..+                         ...+.|+.|.+.+|.+++..-..+.++++|+.|+|++|++.......+.
T Consensus       325 lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~  404 (1081)
T KOG0618|consen  325 LPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLR  404 (1081)
T ss_pred             cchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHh
Confidence            322111                         1134578899999999988888899999999999999999844445688


Q ss_pred             CCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcccccEEecCCCCCCC
Q 047285          478 KLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLGP  543 (552)
Q Consensus       478 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~  543 (552)
                      +++.|+.|+||+|++ ..+|. ...+++.|++|...+|++. .+| .+..+++|+.+|++.|+++.
T Consensus       405 kle~LeeL~LSGNkL-~~Lp~-tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~  466 (1081)
T KOG0618|consen  405 KLEELEELNLSGNKL-TTLPD-TVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSE  466 (1081)
T ss_pred             chHHhHHHhcccchh-hhhhH-HHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhh
Confidence            999999999999999 66887 7999999999999999998 566 88889999999999999884

>PLN03210 Resistant to P

Probab=99.93  E-value=8.7e-24  Score=238.64  Aligned_cols=342  Identities=21%  Similarity=0.228  Sum_probs=234.4

Q ss_pred             ccccCCCCCCEEeCCCCcCCC-----CccCcccCCCC-CCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccc
Q 047285          120 PSLVDLKHLIHLDLSGNDFEG-----IQIPKYLGSLE-NLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLH  193 (552)
Q Consensus       120 ~~l~~l~~L~~L~Ls~n~~~~-----~~~p~~~~~l~-~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~  193 (552)
                      .+|..+++|++|.+..+....     ..+|+.+..++ +|+.|.+.++.+. .+|..+ ...+|++|++.++.+..++..
T Consensus       552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~~L~~~  629 (1153)
T PLN03210        552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLEKLWDG  629 (1153)
T ss_pred             HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCccccccccc
Confidence            347778888888886553211     13566666654 5888888888776 667666 568888888888877665432


Q ss_pred             cCCccccCCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccc
Q 047285          194 VDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQY  273 (552)
Q Consensus       194 ~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~  273 (552)
                            +..+++|+.|+++++....  .++ .+..+++|++|++++|......|..+.++++|+.|++++|.....+|. 
T Consensus       630 ------~~~l~~Lk~L~Ls~~~~l~--~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~-  699 (1153)
T PLN03210        630 ------VHSLTGLRNIDLRGSKNLK--EIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPT-  699 (1153)
T ss_pred             ------cccCCCCCEEECCCCCCcC--cCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCC-
Confidence                  5667888888888764322  122 356778888888888876677777788888888888888765555554 


Q ss_pred             cccccCCCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccce---e---ecCc
Q 047285          274 GSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQ---G---TISS  347 (552)
Q Consensus       274 ~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~---~---~~~~  347 (552)
                        .+ ++++|+.|++++|...+.+|..   .++|++|++++|.+.. +|..+ .+++|++|.+.++...   +   .++.
T Consensus       700 --~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~-lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~  771 (1153)
T PLN03210        700 --GI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEE-FPSNL-RLENLDELILCEMKSEKLWERVQPLTP  771 (1153)
T ss_pred             --cC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcccc-ccccc-cccccccccccccchhhccccccccch
Confidence              33 6788888888888665555532   3678888888888753 44433 4677777777664321   1   1111


Q ss_pred             cccCCCCccCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchh
Q 047285          348 VGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQ  427 (552)
Q Consensus       348 ~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~  427 (552)
                      ......++|+.|++++|. ..+.+|..++++++|+.+++..+..... .+   .  ...+++|+.|++++|.....+|..
T Consensus       772 ~~~~~~~sL~~L~Ls~n~-~l~~lP~si~~L~~L~~L~Ls~C~~L~~-LP---~--~~~L~sL~~L~Ls~c~~L~~~p~~  844 (1153)
T PLN03210        772 LMTMLSPSLTRLFLSDIP-SLVELPSSIQNLHKLEHLEIENCINLET-LP---T--GINLESLESLDLSGCSRLRTFPDI  844 (1153)
T ss_pred             hhhhccccchheeCCCCC-CccccChhhhCCCCCCEEECCCCCCcCe-eC---C--CCCccccCEEECCCCCcccccccc
Confidence            112335688888888887 5667888888888888777765432221 11   0  114568888888888655445532


Q ss_pred             hcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCccc
Q 047285          428 LLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKL  492 (552)
Q Consensus       428 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  492 (552)
                         .++|+.|++++|.++ .+|.++..+++|+.|++++|+-...+|..+..+++|+.+++++|.-
T Consensus       845 ---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~  905 (1153)
T PLN03210        845 ---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGA  905 (1153)
T ss_pred             ---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcc
Confidence               367888888888887 6788888888888888888765556777777888888888888854

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.92  E-value=1e-23  Score=238.08  Aligned_cols=347  Identities=20%  Similarity=0.200  Sum_probs=238.1

Q ss_pred             CcccCCCCCCCEEeCCCCc------CCCCCccccCCCC-CCCEEeccCCCCCCCccccCCccccCCCCCCCEEeCCCCcC
Q 047285          144 PKYLGSLENLRYLNLSGAK------FAGMIPLQLGNLS-NLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNL  216 (552)
Q Consensus       144 p~~~~~l~~L~~L~L~~~~------~~~~lp~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~~  216 (552)
                      +..|..|++|+.|.+..+.      +...+|..+..++ +|+.|++.++.+..+|..       ....+|+.|+++++.+
T Consensus       551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~-------f~~~~L~~L~L~~s~l  623 (1153)
T PLN03210        551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSN-------FRPENLVKLQMQGSKL  623 (1153)
T ss_pred             HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCc-------CCccCCcEEECcCccc
Confidence            3457788999999886553      2334676676664 689999988877776643       2457888888888877


Q ss_pred             CCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCCccEEeccCcccccc
Q 047285          217 SKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQ  296 (552)
Q Consensus       217 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~  296 (552)
                      ..   ++..+..+++|+.|+++++.....+|. +..+++|+.|++++|.....+|.   .+..+++|+.|++++|...+.
T Consensus       624 ~~---L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~---si~~L~~L~~L~L~~c~~L~~  696 (1153)
T PLN03210        624 EK---LWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPS---SIQYLNKLEDLDMSRCENLEI  696 (1153)
T ss_pred             cc---cccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccch---hhhccCCCCEEeCCCCCCcCc
Confidence            65   344556778888888887654444443 55667777777776665555555   566667777777777654445


Q ss_pred             CchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCCCCCCCCCchhHh
Q 047285          297 IPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFA  376 (552)
Q Consensus       297 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~  376 (552)
                      +|..+ .+++|+.|++++|...+.+|..   ..+|+.|++++|.+. .+|.. + .+++|+.|.+.++. . ..+...+.
T Consensus       697 Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~-~-~l~~L~~L~l~~~~-~-~~l~~~~~  767 (1153)
T PLN03210        697 LPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSN-L-RLENLDELILCEMK-S-EKLWERVQ  767 (1153)
T ss_pred             cCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-ccccc-c-cccccccccccccc-h-hhcccccc
Confidence            55544 5666777777766544444432   345666666666654 44443 2 45566666665543 1 01111110


Q ss_pred             hcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCC
Q 047285          377 RLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELS  456 (552)
Q Consensus       377 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~  456 (552)
                      .+                     .+......++|+.|++++|...+.+|..+.++++|+.|++++|...+.+|..+ +++
T Consensus       768 ~l---------------------~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~  825 (1153)
T PLN03210        768 PL---------------------TPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLE  825 (1153)
T ss_pred             cc---------------------chhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-Ccc
Confidence            00                     01111223579999999998888889999999999999999987666788765 789


Q ss_pred             CCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcccccEEec
Q 047285          457 SLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQL  536 (552)
Q Consensus       457 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l  536 (552)
                      +|+.|++++|.....+|..   .++|+.|+|++|.+ ..+|. .+..+++|+.|++++|+-...+|.....+++|+.+++
T Consensus       826 sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i-~~iP~-si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l  900 (1153)
T PLN03210        826 SLESLDLSGCSRLRTFPDI---STNISDLNLSRTGI-EEVPW-WIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDF  900 (1153)
T ss_pred             ccCEEECCCCCcccccccc---ccccCEeECCCCCC-ccChH-HHhcCCCCCEEECCCCCCcCccCcccccccCCCeeec
Confidence            9999999998766566654   46899999999998 46787 7889999999999997766678878888889999999


Q ss_pred             CCCC
Q 047285          537 RSCH  540 (552)
Q Consensus       537 ~~n~  540 (552)
                      ++|.
T Consensus       901 ~~C~  904 (1153)
T PLN03210        901 SDCG  904 (1153)
T ss_pred             CCCc
Confidence            9985

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.86  E-value=9.1e-21  Score=199.23  Aligned_cols=155  Identities=19%  Similarity=0.192  Sum_probs=93.9

Q ss_pred             CCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCCCC
Q 047285          126 KHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYM  205 (552)
Q Consensus       126 ~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~  205 (552)
                      ..-..|+++.+.++  .+|..+.  ++|+.|++..|+++ .+|.   .+++|++|++++|.++.+|.         ..++
T Consensus       201 ~~~~~LdLs~~~Lt--sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~LtsLP~---------lp~s  263 (788)
T PRK15387        201 NGNAVLNVGESGLT--TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTSLPV---------LPPG  263 (788)
T ss_pred             CCCcEEEcCCCCCC--cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccCcccC---------cccc
Confidence            45677888888887  5777665  47888888888887 4664   25788888888888776652         1356


Q ss_pred             CCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCCccE
Q 047285          206 LEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVF  285 (552)
Q Consensus       206 L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~  285 (552)
                      |+.|++++|.+...+..      .+.|+.|++++|.+...+.    ..++|+.|++++|++.+. +.      ...+|+.
T Consensus       264 L~~L~Ls~N~L~~Lp~l------p~~L~~L~Ls~N~Lt~LP~----~p~~L~~LdLS~N~L~~L-p~------lp~~L~~  326 (788)
T PRK15387        264 LLELSIFSNPLTHLPAL------PSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASL-PA------LPSELCK  326 (788)
T ss_pred             cceeeccCCchhhhhhc------hhhcCEEECcCCccccccc----cccccceeECCCCccccC-CC------Ccccccc
Confidence            77777877777654322      2456677777777665432    134566666666655542 21      0124555


Q ss_pred             EeccCccccccCchhhhcccCCcEEeccCCCCC
Q 047285          286 IDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFN  318 (552)
Q Consensus       286 L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~  318 (552)
                      |++++|.+++ +|. +  ..+|++|++++|+++
T Consensus       327 L~Ls~N~L~~-LP~-l--p~~Lq~LdLS~N~Ls  355 (788)
T PRK15387        327 LWAYNNQLTS-LPT-L--PSGLQELSVSDNQLA  355 (788)
T ss_pred             cccccCcccc-ccc-c--ccccceEecCCCccC
Confidence            5555555542 332 1  134555555555554

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.85  E-value=2e-20  Score=196.73  Aligned_cols=263  Identities=24%  Similarity=0.208  Sum_probs=166.9

Q ss_pred             CCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCCCCCCEEeCCCCcCCCCcchhhhcCCCC
Q 047285          151 ENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLP  230 (552)
Q Consensus       151 ~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~  230 (552)
                      ..-..|+++.+.++ .+|..+.  ++|+.|++.+|.++.+|.         .+++|++|++++|+++..+..      .+
T Consensus       201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~LP~---------lp~~Lk~LdLs~N~LtsLP~l------p~  262 (788)
T PRK15387        201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLPA---------LPPELRTLEVSGNQLTSLPVL------PP  262 (788)
T ss_pred             CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCCCCC---------CCCCCcEEEecCCccCcccCc------cc
Confidence            45678999999998 6787775  489999999998887663         246788888888888865432      35


Q ss_pred             CCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCCccEEeccCccccccCchhhhcccCCcEE
Q 047285          231 SLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHL  310 (552)
Q Consensus       231 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L  310 (552)
                      +|+.|++++|.+...+.    ..++|+.|++++|+++.. |.      .+++|+.|++++|.+++ +|..   ..+|+.|
T Consensus       263 sL~~L~Ls~N~L~~Lp~----lp~~L~~L~Ls~N~Lt~L-P~------~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L  327 (788)
T PRK15387        263 GLLELSIFSNPLTHLPA----LPSGLCKLWIFGNQLTSL-PV------LPPGLQELSVSDNQLAS-LPAL---PSELCKL  327 (788)
T ss_pred             ccceeeccCCchhhhhh----chhhcCEEECcCCccccc-cc------cccccceeECCCCcccc-CCCC---ccccccc
Confidence            77888888887765433    124566777777766532 22      13567777777777663 3321   2346666


Q ss_pred             eccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCCCCCCCCCchhHhhcccCceeeccccc
Q 047285          311 DLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLID  390 (552)
Q Consensus       311 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~  390 (552)
                      ++++|.+++ +|..   ..+|+.|++++|+++ .+|..    ..+|+.|++++|. +. .+|..                
T Consensus       328 ~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls-~LP~l----p~~L~~L~Ls~N~-L~-~LP~l----------------  380 (788)
T PRK15387        328 WAYNNQLTS-LPTL---PSGLQELSVSDNQLA-SLPTL----PSELYKLWAYNNR-LT-SLPAL----------------  380 (788)
T ss_pred             ccccCcccc-cccc---ccccceEecCCCccC-CCCCC----Ccccceehhhccc-cc-cCccc----------------
Confidence            677766654 3321   135666677666666 34432    2455666666665 43 23321                


Q ss_pred             CCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCc
Q 047285          391 LSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNG  470 (552)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  470 (552)
                                      ..+|+.|++++|.+++ +|..   .++|+.|++++|+++ .+|..   ..+|+.|++++|+++ 
T Consensus       381 ----------------~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-  435 (788)
T PRK15387        381 ----------------PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-  435 (788)
T ss_pred             ----------------ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-
Confidence                            0156777777777764 3322   356777777777776 35543   235667777777776 


Q ss_pred             cCcccccCCCCCCeeeCCCcccceecCH
Q 047285          471 FIPLSLGKLSHLEYLDLSNNKLNASLSE  498 (552)
Q Consensus       471 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~  498 (552)
                      .+|..+.++++|+.|+|++|++++..+.
T Consensus       436 ~LP~sl~~L~~L~~LdLs~N~Ls~~~~~  463 (788)
T PRK15387        436 RLPESLIHLSSETTVNLEGNPLSERTLQ  463 (788)
T ss_pred             ccChHHhhccCCCeEECCCCCCCchHHH
Confidence            5677777777777777777777766555

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.83  E-value=2.4e-22  Score=186.41  Aligned_cols=379  Identities=23%  Similarity=0.242  Sum_probs=199.0

Q ss_pred             CEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccC-CCCCCCccccCCccccCCCCCCC
Q 047285          129 IHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSG-TFLSNYDLHVDSLSWLSGLYMLE  207 (552)
Q Consensus       129 ~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~~~l~~l~~L~  207 (552)
                      ..++|..|.|+.+ -|..|+.+++|+.|||+.|+|+..-|+.|..+++|-.|-+.+ |+|+.+|...     |.++..|+
T Consensus        70 veirLdqN~I~~i-P~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~-----F~gL~slq  143 (498)
T KOG4237|consen   70 VEIRLDQNQISSI-PPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGA-----FGGLSSLQ  143 (498)
T ss_pred             eEEEeccCCcccC-ChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhH-----hhhHHHHH
Confidence            4455556666542 334556666666666666666655566666666655554444 5566555443     55566666


Q ss_pred             EEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCC-cc--------cccccc
Q 047285          208 HLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSL-FQ--------YGSWVF  278 (552)
Q Consensus       208 ~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~--------~~~~~~  278 (552)
                      .|.+.-|++..  .....+..+++|..|.+.+|.+..+....+..+..++.+.+..|.+...- ..        ....++
T Consensus       144 rLllNan~i~C--ir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iets  221 (498)
T KOG4237|consen  144 RLLLNANHINC--IRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETS  221 (498)
T ss_pred             HHhcChhhhcc--hhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcc
Confidence            66666655554  23444555666666666666665555555666666666555544321100 00        000011


Q ss_pred             CCCC----------------------ccEE---eccCccccccCc-hhhhcccCCcEEeccCCCCCCCCCccCCCCCCCC
Q 047285          279 GLRN----------------------LVFI---DLSSNQFQGQIP-IGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLE  332 (552)
Q Consensus       279 ~l~~----------------------L~~L---~L~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  332 (552)
                      ....                      ++.+   ..+.+...+.-| ..|..+++|++|++++|+++++-+.+|.....++
T Consensus       222 garc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~  301 (498)
T KOG4237|consen  222 GARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQ  301 (498)
T ss_pred             cceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhh
Confidence            1111                      1111   111121222222 3466677777777777777777777777777777


Q ss_pred             EEEccCccceeecCccccCCCCccCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCE
Q 047285          333 FLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALES  412 (552)
Q Consensus       333 ~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~  412 (552)
                      +|.+..|++. .+....|.++..|+.|++++|+ ++...|..|..+.+|..+.+-.+..            .|+| .|..
T Consensus       302 eL~L~~N~l~-~v~~~~f~~ls~L~tL~L~~N~-it~~~~~aF~~~~~l~~l~l~~Np~------------~CnC-~l~w  366 (498)
T KOG4237|consen  302 ELYLTRNKLE-FVSSGMFQGLSGLKTLSLYDNQ-ITTVAPGAFQTLFSLSTLNLLSNPF------------NCNC-RLAW  366 (498)
T ss_pred             hhhcCcchHH-HHHHHhhhccccceeeeecCCe-eEEEecccccccceeeeeehccCcc------------cCcc-chHH
Confidence            7777777766 4555556777777777777776 6655566665555333222221110            0000 1111


Q ss_pred             E--EccCCcCcccCchhhcCCCCCcEEECCCCcccC---CCcccc---------cCCCCCCEEeCCCCcCCccCcccccC
Q 047285          413 L--DLSICQISGHLTNQLLQFKSLHTLELGHNSLFG---PLPPAL---------GELSSLKKLDLSNNMLNGFIPLSLGK  478 (552)
Q Consensus       413 L--~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~---~~~~~l---------~~l~~L~~L~L~~n~l~~~~~~~~~~  478 (552)
                      |  ++......|..+-  .....++.+.+++..+..   ..|+..         ..++.+.+..=..|.....+|..+  
T Consensus       367 l~~Wlr~~~~~~~~~C--q~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~i--  442 (498)
T KOG4237|consen  367 LGEWLRKKSVVGNPRC--QSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGI--  442 (498)
T ss_pred             HHHHHhhCCCCCCCCC--CCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCC--
Confidence            1  0111111111110  112335555555543321   111111         122233332222222222445443  


Q ss_pred             CCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcccccEEecCCC
Q 047285          479 LSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSC  539 (552)
Q Consensus       479 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n  539 (552)
                      ...-..+++.+|.+ ..+|..   .+.+| .+|+++|++....-..|.++.+|.+|-+++|
T Consensus       443 P~d~telyl~gn~~-~~vp~~---~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  443 PVDVTELYLDGNAI-TSVPDE---LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             CchhHHHhcccchh-cccCHH---HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            23456889999999 567773   55677 8999999998776677888889999988876

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.81  E-value=3.3e-19  Score=188.75  Aligned_cols=205  Identities=16%  Similarity=0.144  Sum_probs=119.5

Q ss_pred             CCCCcHHHHHHHHHhHhcCCCCCCCCC----CCCCCCCCCcccCc----------------eEecCCCCcEEEEEcCCCC
Q 047285           34 YVGCIDSEREALLKLKQDLIDPSNRLA----SWNTGDGDCCKWAG----------------VFCSNITGHVLQLSLQNPF   93 (552)
Q Consensus        34 ~~~~~~~~~~~l~~~~~~~~~~~~~~~----~W~~~~~~~c~w~g----------------v~c~~~~~~v~~L~l~~~~   93 (552)
                      ..+-.++|.+.+.++.+.+..|. +..    +|+. ++++|.-+.                |.|.  ++.|+.+.+-+..
T Consensus        57 ~~~~~~~~~~~~~~~~~~l~~p~-~~~~~~~~~~~-~~~fc~~~~~~~~~l~~~~~~~~~tv~~~--~~~vt~l~~~g~~  132 (754)
T PRK15370         57 PETASPEEIKSKFECLRMLAFPA-YADNIQYSRGG-ADQYCILSENSQEILSIVFNTEGYTVEGG--GKSVTYTRVTESE  132 (754)
T ss_pred             CCCCCHHHHHHHHHHHHHhcCCc-hhhccccccCC-CCcccccCCcchhhheeeecCCceEEecC--CCccccccccccc
Confidence            34455778888999888887663 334    4886 678886554                5553  5677777776643


Q ss_pred             ccCCC----Cchhhcc-cCccccCcccc----------ccCccccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeC
Q 047285           94 SYLGG----DLREVKA-GSNYERSKLGG----------KVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNL  158 (552)
Q Consensus        94 ~~~~~----~l~~l~~-~~~~~~~~~~~----------~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L  158 (552)
                      .....    +..+... ...+..+...+          .+.+++  ..+...|++++++++  .+|..+.  ++|+.|++
T Consensus       133 ~~~~~~~~~~~~~~~~~w~~w~~~~~~~~~~~r~~a~~r~~~Cl--~~~~~~L~L~~~~Lt--sLP~~Ip--~~L~~L~L  206 (754)
T PRK15370        133 QASSASGSKDAVNYELIWSEWVKEAPAKEAANREEAVQRMRDCL--KNNKTELRLKILGLT--TIPACIP--EQITTLIL  206 (754)
T ss_pred             ccccCCCCCChhhHHHHHHHHHhcCCCCccccHHHHHHHHHhhc--ccCceEEEeCCCCcC--cCCcccc--cCCcEEEe
Confidence            22111    1100000 00000011110          111222  246788999988888  5777654  57899999


Q ss_pred             CCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcC
Q 047285          159 SGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLT  238 (552)
Q Consensus       159 ~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~  238 (552)
                      ++|+++ .+|..+.  ++|++|++++|.++.+|..      +  ..+|+.|++++|.+...+.   .+  ..+|+.|+++
T Consensus       207 s~N~Lt-sLP~~l~--~nL~~L~Ls~N~LtsLP~~------l--~~~L~~L~Ls~N~L~~LP~---~l--~s~L~~L~Ls  270 (754)
T PRK15370        207 DNNELK-SLPENLQ--GNIKTLYANSNQLTSIPAT------L--PDTIQEMELSINRITELPE---RL--PSALQSLDLF  270 (754)
T ss_pred             cCCCCC-cCChhhc--cCCCEEECCCCccccCChh------h--hccccEEECcCCccCcCCh---hH--hCCCCEEECc
Confidence            999888 5676554  5889999998888776532      1  2367778888777765432   22  1356777777


Q ss_pred             CCCCCCCCCCcccCCCCCceeecCCCCCC
Q 047285          239 KCQLCHFPPLLSANFSSLKALHLAINNFD  267 (552)
Q Consensus       239 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~  267 (552)
                      +|.+...+. .+  .++|+.|++++|+++
T Consensus       271 ~N~L~~LP~-~l--~~sL~~L~Ls~N~Lt  296 (754)
T PRK15370        271 HNKISCLPE-NL--PEELRYLSVYDNSIR  296 (754)
T ss_pred             CCccCcccc-cc--CCCCcEEECCCCccc
Confidence            666664322 22  134555555555554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.76  E-value=3.7e-18  Score=180.88  Aligned_cols=246  Identities=26%  Similarity=0.303  Sum_probs=116.9

Q ss_pred             CCCEEeccCCCCCCCccccCCccccCCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCC
Q 047285          176 NLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSS  255 (552)
Q Consensus       176 ~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~  255 (552)
                      +...|+++++.++.+|..   +     .++|+.|++++|.++..+.   .+  .++|++|++++|.+...+.. +  .++
T Consensus       179 ~~~~L~L~~~~LtsLP~~---I-----p~~L~~L~Ls~N~LtsLP~---~l--~~nL~~L~Ls~N~LtsLP~~-l--~~~  242 (754)
T PRK15370        179 NKTELRLKILGLTTIPAC---I-----PEQITTLILDNNELKSLPE---NL--QGNIKTLYANSNQLTSIPAT-L--PDT  242 (754)
T ss_pred             CceEEEeCCCCcCcCCcc---c-----ccCCcEEEecCCCCCcCCh---hh--ccCCCEEECCCCccccCChh-h--hcc
Confidence            456777777766665532   1     1356677777776665322   11  24666666666666544321 1  134


Q ss_pred             CceeecCCCCCCCCCccccccccCCCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEE
Q 047285          256 LKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLS  335 (552)
Q Consensus       256 L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  335 (552)
                      |+.|++++|.+. .+|.   .+  .++|+.|++++|.++ .+|..+.  ++|+.|++++|.+++. |..+.  ++|+.|+
T Consensus       243 L~~L~Ls~N~L~-~LP~---~l--~s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~L-P~~lp--~sL~~L~  310 (754)
T PRK15370        243 IQEMELSINRIT-ELPE---RL--PSALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRTL-PAHLP--SGITHLN  310 (754)
T ss_pred             ccEEECcCCccC-cCCh---hH--hCCCCEEECcCCccC-ccccccC--CCCcEEECCCCccccC-cccch--hhHHHHH
Confidence            555555555554 2222   22  134555555555554 2343332  3455555555555432 22111  2444555


Q ss_pred             ccCccceeecCccccCCCCccCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEc
Q 047285          336 VAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDL  415 (552)
Q Consensus       336 l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l  415 (552)
                      +++|.++ .+|.. +  .++|+.|++++|. +++ +|..+.                               ++|+.|++
T Consensus       311 Ls~N~Lt-~LP~~-l--~~sL~~L~Ls~N~-Lt~-LP~~l~-------------------------------~sL~~L~L  353 (754)
T PRK15370        311 VQSNSLT-ALPET-L--PPGLKTLEAGENA-LTS-LPASLP-------------------------------PELQVLDV  353 (754)
T ss_pred             hcCCccc-cCCcc-c--cccceeccccCCc-ccc-CChhhc-------------------------------CcccEEEC
Confidence            5555444 23322 1  1344555555544 331 222110                               14555566


Q ss_pred             cCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCccc----ccCCCCCCeeeCCCcc
Q 047285          416 SICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLS----LGKLSHLEYLDLSNNK  491 (552)
Q Consensus       416 s~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~  491 (552)
                      ++|+++. +|..+  .++|+.|++++|+++ .+|..+.  .+|+.|++++|++. .+|..    ...++++..|++.+|+
T Consensus       354 s~N~L~~-LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Np  426 (754)
T PRK15370        354 SKNQITV-LPETL--PPTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNP  426 (754)
T ss_pred             CCCCCCc-CChhh--cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCC
Confidence            6555552 33333  245556666665555 3444332  24555555555554 33332    2223555555555555


Q ss_pred             cc
Q 047285          492 LN  493 (552)
Q Consensus       492 l~  493 (552)
                      ++
T Consensus       427 ls  428 (754)
T PRK15370        427 FS  428 (754)
T ss_pred             cc
Confidence            53

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.75  E-value=1.9e-19  Score=177.28  Aligned_cols=59  Identities=24%  Similarity=0.224  Sum_probs=39.4

Q ss_pred             EEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCC----CccccCCCCCCCEEeccCCCCC
Q 047285          130 HLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGM----IPLQLGNLSNLQYLDLSGTFLS  188 (552)
Q Consensus       130 ~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~----lp~~l~~l~~L~~L~l~~n~l~  188 (552)
                      .|+|..+.+++...+..+..+++|++|++++|.++..    ++..+...++|++++++++.+.
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~   64 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETG   64 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccC
Confidence            4666677776445566666777788888888877432    4555666777777777776544

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.75  E-value=1.3e-19  Score=178.36  Aligned_cols=284  Identities=25%  Similarity=0.247  Sum_probs=144.0

Q ss_pred             EEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCC----CCCcccCCCCCceeecCCCCCCCCCccccccccCCCCc
Q 047285          208 HLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHF----PPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNL  283 (552)
Q Consensus       208 ~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L  283 (552)
                      .|+|..+.+.+. .+...+..+++|++|+++++.+++.    ++..+...+.++.++++++.+.+....           
T Consensus         2 ~l~L~~~~l~~~-~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~-----------   69 (319)
T cd00116           2 QLSLKGELLKTE-RATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRG-----------   69 (319)
T ss_pred             ccccccCccccc-chHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchH-----------
Confidence            456666666532 3444455556677777777765432    122223334455555544433310000           


Q ss_pred             cEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCC---CCCEEEccCcccee----ecCccccCCC-Cc
Q 047285          284 VFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFN---DLEFLSVAWNSLQG----TISSVGLENL-TS  355 (552)
Q Consensus       284 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~---~L~~L~l~~n~l~~----~~~~~~l~~l-~~  355 (552)
                                ...++..+..+++|++|++++|.+.+..+..+..+.   +|++|++++|.+.+    .+... +..+ ++
T Consensus        70 ----------~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~-l~~~~~~  138 (319)
T cd00116          70 ----------LQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKG-LKDLPPA  138 (319)
T ss_pred             ----------HHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHH-HHhCCCC
Confidence                      011223344455566666665555543333333222   36666666665542    11111 3344 66


Q ss_pred             cCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCccc----CchhhcCC
Q 047285          356 IETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGH----LTNQLLQF  431 (552)
Q Consensus       356 L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~----~~~~l~~l  431 (552)
                      |+.|++++|. +++.....+...                         +..++.|++|++++|.+++.    ++..+..+
T Consensus       139 L~~L~L~~n~-l~~~~~~~~~~~-------------------------~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~  192 (319)
T cd00116         139 LEKLVLGRNR-LEGASCEALAKA-------------------------LRANRDLKELNLANNGIGDAGIRALAEGLKAN  192 (319)
T ss_pred             ceEEEcCCCc-CCchHHHHHHHH-------------------------HHhCCCcCEEECcCCCCchHHHHHHHHHHHhC
Confidence            7777777776 553322221110                         01223566677776666632    22334445


Q ss_pred             CCCcEEECCCCcccCC----CcccccCCCCCCEEeCCCCcCCccCccccc-----CCCCCCeeeCCCcccce----ecCH
Q 047285          432 KSLHTLELGHNSLFGP----LPPALGELSSLKKLDLSNNMLNGFIPLSLG-----KLSHLEYLDLSNNKLNA----SLSE  498 (552)
Q Consensus       432 ~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~----~~~~  498 (552)
                      ++|+.|++++|.+.+.    ++..+..+++|++|++++|.+++.....+.     ..+.|+.|++++|.+++    .+..
T Consensus       193 ~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~  272 (319)
T cd00116         193 CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAE  272 (319)
T ss_pred             CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHH
Confidence            5777777777766532    233445566777777777776642221111     23577777777777652    1222


Q ss_pred             HhhhcCCCCCEEEccCCeeeEE----cCCCCcCc-ccccEEecCCCCC
Q 047285          499 IHFVNLTKLTWFSASGNSLILK----FNPNWVPP-FQLETLQLRSCHL  541 (552)
Q Consensus       499 ~~~~~l~~L~~L~L~~n~~~~~----~~~~~~~~-~~L~~L~l~~n~~  541 (552)
                       .+..+++|+++++++|.+...    +...+... ..|+++++.+|.+
T Consensus       273 -~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         273 -VLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             -HHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence             445556777777777777644    33333333 4677777776653

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.74  E-value=1.3e-19  Score=168.37  Aligned_cols=283  Identities=22%  Similarity=0.197  Sum_probs=179.7

Q ss_pred             CCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCCccEEeccC-ccccccCchhhhcccCCcE
Q 047285          231 SLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSS-NQFQGQIPIGLRNLTSLRH  309 (552)
Q Consensus       231 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~-n~~~~~~~~~l~~l~~L~~  309 (552)
                      .-.++++..|.++.+++..|..+++|+.|++++|+++...|+   .|..++++..|-+.+ |+++......|+.+..++.
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~---AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqr  144 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPD---AFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQR  144 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChH---hhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHH
Confidence            456777777888888888888888888888888888777777   677777766665554 7777544456777778888


Q ss_pred             EeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCCCCCCCC-----------CchhHhhc
Q 047285          310 LDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGK-----------IPTSFARL  378 (552)
Q Consensus       310 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~-----------~~~~~~~l  378 (552)
                      |.+.-|++.-.....|..++++..|.+..|.+. .++...+..+..++.+.+..|+.+..-           .|..++..
T Consensus       145 LllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsga  223 (498)
T KOG4237|consen  145 LLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGA  223 (498)
T ss_pred             HhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccc
Confidence            888777777777777777788888888777776 555545777777777777777621110           11111111


Q ss_pred             ccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCc-hhhcCCCCCcEEECCCCcccCCCcccccCCCC
Q 047285          379 CKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLT-NQLLQFKSLHTLELGHNSLFGPLPPALGELSS  457 (552)
Q Consensus       379 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  457 (552)
                      ....-..+.............    .+....+..=-.+.+...+..| ..|..+++|++|++++|++++.-+.+|....+
T Consensus       224 rc~~p~rl~~~Ri~q~~a~kf----~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~  299 (498)
T KOG4237|consen  224 RCVSPYRLYYKRINQEDARKF----LCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAE  299 (498)
T ss_pred             eecchHHHHHHHhcccchhhh----hhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhh
Confidence            111111111111110000000    0000111111122333333444 35777888888888888888777777888888


Q ss_pred             CCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcC
Q 047285          458 LKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFN  522 (552)
Q Consensus       458 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~  522 (552)
                      +++|.|..|++...-...|.++..|++|+|.+|+++..-|. .|..+.+|.+|.|-.|++.+.+-
T Consensus       300 l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~-aF~~~~~l~~l~l~~Np~~CnC~  363 (498)
T KOG4237|consen  300 LQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPG-AFQTLFSLSTLNLLSNPFNCNCR  363 (498)
T ss_pred             hhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecc-cccccceeeeeehccCcccCccc
Confidence            88888888887644455677788888888888888766666 77888888888888888776643

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.63  E-value=5.7e-18  Score=139.75  Aligned_cols=162  Identities=28%  Similarity=0.382  Sum_probs=121.0

Q ss_pred             ccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccC
Q 047285          122 LVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLS  201 (552)
Q Consensus       122 l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~  201 (552)
                      +.++.+.+.|.+|+|+++  .+|..+..+.+|+.|++.+|+++ .+|..++.+++|+.|+++-|++..+|..      |+
T Consensus        29 Lf~~s~ITrLtLSHNKl~--~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~~lprg------fg   99 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT--VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLNILPRG------FG   99 (264)
T ss_pred             ccchhhhhhhhcccCcee--ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhhcCccc------cC
Confidence            566778888899999988  57888888999999999999887 6888888899999998888876665543      45


Q ss_pred             CCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCC
Q 047285          202 GLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLR  281 (552)
Q Consensus       202 ~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~  281 (552)
                      .++.|+.||+++|++..                         ...|..|..+..|+.|.++.|.++-. |.   .+++++
T Consensus       100 s~p~levldltynnl~e-------------------------~~lpgnff~m~tlralyl~dndfe~l-p~---dvg~lt  150 (264)
T KOG0617|consen  100 SFPALEVLDLTYNNLNE-------------------------NSLPGNFFYMTTLRALYLGDNDFEIL-PP---DVGKLT  150 (264)
T ss_pred             CCchhhhhhcccccccc-------------------------ccCCcchhHHHHHHHHHhcCCCcccC-Ch---hhhhhc
Confidence            55556666666655544                         23444555566666666666665532 22   677888


Q ss_pred             CccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCC
Q 047285          282 NLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTP  322 (552)
Q Consensus       282 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~  322 (552)
                      +|+.|.+++|.+. .+|..++.++.|++|.+.+|+++...|
T Consensus       151 ~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlpp  190 (264)
T KOG0617|consen  151 NLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPP  190 (264)
T ss_pred             ceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecCh
Confidence            9999999999887 688889999999999999998875433

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.58  E-value=3.3e-17  Score=135.24  Aligned_cols=163  Identities=28%  Similarity=0.477  Sum_probs=117.0

Q ss_pred             CCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCcccccccccc
Q 047285          326 SKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSC  405 (552)
Q Consensus       326 ~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~  405 (552)
                      .++.+++.|.+++|+++ .+|.. +..+.+|+.|++++|+ +. .+|..+.+++                          
T Consensus        30 f~~s~ITrLtLSHNKl~-~vppn-ia~l~nlevln~~nnq-ie-~lp~~issl~--------------------------   79 (264)
T KOG0617|consen   30 FNMSNITRLTLSHNKLT-VVPPN-IAELKNLEVLNLSNNQ-IE-ELPTSISSLP--------------------------   79 (264)
T ss_pred             cchhhhhhhhcccCcee-ecCCc-HHHhhhhhhhhcccch-hh-hcChhhhhch--------------------------
Confidence            34566777778888877 55555 6777788888888876 43 5666666666                          


Q ss_pred             CCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccC-CCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCe
Q 047285          406 GAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFG-PLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEY  484 (552)
Q Consensus       406 ~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  484 (552)
                         +|+.|+++-|++. ..|..|+.++.|+.||+..|++.. .+|..|..++.|+.|.+++|.+. .+|..++++++|+.
T Consensus        80 ---klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqi  154 (264)
T KOG0617|consen   80 ---KLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQI  154 (264)
T ss_pred             ---hhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeE
Confidence               5666666666655 567778888888888888877763 46777777778888888888877 67777788888888


Q ss_pred             eeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCc
Q 047285          485 LDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWV  526 (552)
Q Consensus       485 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~  526 (552)
                      |.+.+|.+ -++|. .++.+++|++|++.+|+++. +|+.+.
T Consensus       155 l~lrdndl-l~lpk-eig~lt~lrelhiqgnrl~v-lppel~  193 (264)
T KOG0617|consen  155 LSLRDNDL-LSLPK-EIGDLTRLRELHIQGNRLTV-LPPELA  193 (264)
T ss_pred             EeeccCch-hhCcH-HHHHHHHHHHHhcccceeee-cChhhh
Confidence            88888877 34666 57778888888888888773 344443

>PLN03150 hypothetical protein; Provisional

Probab=99.53  E-value=7.1e-14  Score=147.92  Aligned_cols=129  Identities=37%  Similarity=0.591  Sum_probs=109.5

Q ss_pred             CCCcHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCc----ccCceEecC--CC--CcEEEEEcCCCCccCCCCchhhccc
Q 047285           35 VGCIDSEREALLKLKQDLIDPSNRLASWNTGDGDCC----KWAGVFCSN--IT--GHVLQLSLQNPFSYLGGDLREVKAG  106 (552)
Q Consensus        35 ~~~~~~~~~~l~~~~~~~~~~~~~~~~W~~~~~~~c----~w~gv~c~~--~~--~~v~~L~l~~~~~~~~~~l~~l~~~  106 (552)
                      ..+.++|.+||+.+|+++..+..  .+|+  +.+|+    .|.||.|..  ..  .+|+.|+|++               
T Consensus       367 ~~t~~~~~~aL~~~k~~~~~~~~--~~W~--g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~---------------  427 (623)
T PLN03150        367 SKTLLEEVSALQTLKSSLGLPLR--FGWN--GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDN---------------  427 (623)
T ss_pred             cccCchHHHHHHHHHHhcCCccc--CCCC--CCCCCCcccccccceeeccCCCCceEEEEEECCC---------------
Confidence            35667899999999999875532  4897  43443    799999952  22  2589999988               


Q ss_pred             CccccCccccccCccccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCC
Q 047285          107 SNYERSKLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTF  186 (552)
Q Consensus       107 ~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~  186 (552)
                           +.+.|.+|..++++++|++|+|++|.+.+ .+|..++.+++|++|+|++|++++.+|..++++++|++|++++|.
T Consensus       428 -----n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g-~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~  501 (623)
T PLN03150        428 -----QGLRGFIPNDISKLRHLQSINLSGNSIRG-NIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNS  501 (623)
T ss_pred             -----CCccccCCHHHhCCCCCCEEECCCCcccC-cCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCc
Confidence                 48889999999999999999999999998 599999999999999999999999999999999999999999987


Q ss_pred             CC
Q 047285          187 LS  188 (552)
Q Consensus       187 l~  188 (552)
                      +.
T Consensus       502 l~  503 (623)
T PLN03150        502 LS  503 (623)
T ss_pred             cc
Confidence            65

>PLN03150 hypothetical protein; Provisional

Probab=99.16  E-value=7.7e-11  Score=125.00  Aligned_cols=113  Identities=32%  Similarity=0.529  Sum_probs=94.3

Q ss_pred             CCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCC
Q 047285          409 ALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLS  488 (552)
Q Consensus       409 ~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  488 (552)
                      .++.|+|++|.+.+.+|..+..+++|+.|+|++|++.|.+|..++.+++|+.|++++|.+++.+|..++++++|+.|+|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            37788888888888888888888899999999998888888888888899999999998888888888888889999999


Q ss_pred             CcccceecCHHhhhc-CCCCCEEEccCCeeeEEcC
Q 047285          489 NNKLNASLSEIHFVN-LTKLTWFSASGNSLILKFN  522 (552)
Q Consensus       489 ~n~l~~~~~~~~~~~-l~~L~~L~L~~n~~~~~~~  522 (552)
                      +|+++|.+|. .+.. ..++..+++.+|+..+..|
T Consensus       499 ~N~l~g~iP~-~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        499 GNSLSGRVPA-ALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             CCcccccCCh-HHhhccccCceEEecCCccccCCC
Confidence            9988888887 4554 3566788888887666544

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.15  E-value=7.1e-12  Score=118.99  Aligned_cols=212  Identities=26%  Similarity=0.246  Sum_probs=115.5

Q ss_pred             cCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCC--CccccCCCCCCCEEeccCCCCCCCccccCCcccc
Q 047285          123 VDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGM--IPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWL  200 (552)
Q Consensus       123 ~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~--lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l  200 (552)
                      .+++.|+...|.++.+...........|++++.|||+.|=+..-  +-.....+|+|+.|+++.|.+...-....    -
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~----~  193 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT----T  193 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc----h
Confidence            45777777777777665321113556677777777777755432  22334567777777777776543211100    1


Q ss_pred             CCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCC
Q 047285          201 SGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGL  280 (552)
Q Consensus       201 ~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l  280 (552)
                      ..++.|+.|.++.|.++ +.++...+..+|+|+.|++..|............+..|+.|++++|++......  ...+.+
T Consensus       194 ~~l~~lK~L~l~~CGls-~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~--~~~~~l  270 (505)
T KOG3207|consen  194 LLLSHLKQLVLNSCGLS-WKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQG--YKVGTL  270 (505)
T ss_pred             hhhhhhheEEeccCCCC-HHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccc--cccccc
Confidence            24667777777777776 445566666777777777777753333333344556666777766665433211  134456


Q ss_pred             CCccEEeccCcccccc-Cchh-----hhcccCCcEEeccCCCCCCCC-CccCCCCCCCCEEEccCccc
Q 047285          281 RNLVFIDLSSNQFQGQ-IPIG-----LRNLTSLRHLDLRFNYFNSTT-PGWLSKFNDLEFLSVAWNSL  341 (552)
Q Consensus       281 ~~L~~L~L~~n~~~~~-~~~~-----l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l  341 (552)
                      +.|+.|+++.+.+... .|+.     ...+++|++|++..|++...- ...+..+++|+.|.+..|.+
T Consensus       271 ~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l  338 (505)
T KOG3207|consen  271 PGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL  338 (505)
T ss_pred             cchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccc
Confidence            6666666666655422 1111     233455555555555553211 12223334444444444444

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.11  E-value=3.4e-12  Score=124.89  Aligned_cols=194  Identities=29%  Similarity=0.398  Sum_probs=153.3

Q ss_pred             cCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCCCCCCCCCchhHhhcccCcee
Q 047285          305 TSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSV  384 (552)
Q Consensus       305 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l  384 (552)
                      ..-...|++.|++. .+|..+..+..|+.+.+..|.+. .+|.. +.++..|+.++++.|+ ++ .+|..++.++     
T Consensus        75 tdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~-i~~L~~lt~l~ls~Nq-lS-~lp~~lC~lp-----  144 (722)
T KOG0532|consen   75 TDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEA-ICNLEALTFLDLSSNQ-LS-HLPDGLCDLP-----  144 (722)
T ss_pred             cchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchh-hhhhhHHHHhhhccch-hh-cCChhhhcCc-----
Confidence            34456778888876 45666677778888888888876 67766 7888888888888887 54 6777777776     


Q ss_pred             ecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCC
Q 047285          385 DLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLS  464 (552)
Q Consensus       385 ~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  464 (552)
                                               |+.|.+++|+++ .+|+.++..++|..||.+.|++. .+|..++.+.+|+.|.+.
T Consensus       145 -------------------------Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vr  197 (722)
T KOG0532|consen  145 -------------------------LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVR  197 (722)
T ss_pred             -------------------------ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHh
Confidence                                     899999999988 57778888899999999999998 788889999999999999


Q ss_pred             CCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCc---CcccccEEecCCCC
Q 047285          465 NNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWV---PPFQLETLQLRSCH  540 (552)
Q Consensus       465 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~---~~~~L~~L~l~~n~  540 (552)
                      .|++. .+|..+..++ |..||++.|++ ..+|- .|.+++.|++|-|.+|++... |-.++   ...-.++|+..-|+
T Consensus       198 Rn~l~-~lp~El~~Lp-Li~lDfScNki-s~iPv-~fr~m~~Lq~l~LenNPLqSP-PAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  198 RNHLE-DLPEELCSLP-LIRLDFSCNKI-SYLPV-DFRKMRHLQVLQLENNPLQSP-PAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             hhhhh-hCCHHHhCCc-eeeeecccCce-eecch-hhhhhhhheeeeeccCCCCCC-hHHHHhccceeeeeeecchhcc
Confidence            99988 5777777554 89999999999 66887 799999999999999998732 22221   22346788888885

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.10  E-value=2.3e-12  Score=126.00  Aligned_cols=198  Identities=31%  Similarity=0.461  Sum_probs=162.3

Q ss_pred             CCCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCE
Q 047285          279 GLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIET  358 (552)
Q Consensus       279 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~  358 (552)
                      .+..-...+++.|++. ++|..+..+..|+.+.++.|.+. .+|..+.++..|++++++.|+++ ..|.. +..+ -|+.
T Consensus        73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~-lC~l-pLkv  147 (722)
T KOG0532|consen   73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDG-LCDL-PLKV  147 (722)
T ss_pred             cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChh-hhcC-ccee
Confidence            3455667899999998 88999999999999999999886 56788999999999999999998 66665 5555 4899


Q ss_pred             EeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEE
Q 047285          359 LDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLE  438 (552)
Q Consensus       359 L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~  438 (552)
                      |-+++|+ ++ .+|+.++...                             .|..||.+.|.+. .+|..++++.+|+.|.
T Consensus       148 li~sNNk-l~-~lp~~ig~~~-----------------------------tl~~ld~s~nei~-slpsql~~l~slr~l~  195 (722)
T KOG0532|consen  148 LIVSNNK-LT-SLPEEIGLLP-----------------------------TLAHLDVSKNEIQ-SLPSQLGYLTSLRDLN  195 (722)
T ss_pred             EEEecCc-cc-cCCcccccch-----------------------------hHHHhhhhhhhhh-hchHHhhhHHHHHHHH
Confidence            9999997 54 6677666444                             7888999999987 5777899999999999


Q ss_pred             CCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhc-CCCCCEEEccCCe
Q 047285          439 LGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVN-LTKLTWFSASGNS  516 (552)
Q Consensus       439 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~-l~~L~~L~L~~n~  516 (552)
                      +..|++. .+|..+..+ .|..||++.|++. .+|..|.++..|++|-|.+|++......+...+ ..-.++|+..-|+
T Consensus       196 vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  196 VRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             Hhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhcc
Confidence            9999998 677777755 6999999999998 899999999999999999999965444433333 3444788888774

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.09  E-value=1.4e-11  Score=117.03  Aligned_cols=112  Identities=22%  Similarity=0.193  Sum_probs=48.9

Q ss_pred             cCCCCCceeecCCCCCCCCCccccccccCCCCccEEeccCcccccc--CchhhhcccCCcEEeccCCCCCCCCCccC-CC
Q 047285          251 ANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQ--IPIGLRNLTSLRHLDLRFNYFNSTTPGWL-SK  327 (552)
Q Consensus       251 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l-~~  327 (552)
                      .++++|+...+.+.........  .....+++++.|+|+.|-+...  +......+|+|+.|.++.|++.-...... ..
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~--~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~  195 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIE--EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL  195 (505)
T ss_pred             hhHHhhhheeecCccccccchh--hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence            3455566666655544322211  1334456666666666544421  12233445556666666555542221110 12


Q ss_pred             CCCCCEEEccCccceeecCccccCCCCccCEEeCCCC
Q 047285          328 FNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGN  364 (552)
Q Consensus       328 l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n  364 (552)
                      +++|+.|.++.|.++..-....+..+|+|+.|++..|
T Consensus       196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N  232 (505)
T KOG3207|consen  196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEAN  232 (505)
T ss_pred             hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcc
Confidence            3444444444444442222222333444444444444

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.08  E-value=8.7e-12  Score=115.23  Aligned_cols=200  Identities=24%  Similarity=0.205  Sum_probs=94.1

Q ss_pred             CCCCccEEeccCccccccCchh----hhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCC
Q 047285          279 GLRNLVFIDLSSNQFQGQIPIG----LRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLT  354 (552)
Q Consensus       279 ~l~~L~~L~L~~n~~~~~~~~~----l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~  354 (552)
                      .+++|++++||+|.+...-++.    +..+..|++|.+.+|.+.......++.  .|..+.          -......-+
T Consensus        90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~----------~~kk~~~~~  157 (382)
T KOG1909|consen   90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA----------VNKKAASKP  157 (382)
T ss_pred             cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH----------HHhccCCCc
Confidence            4456666666666654333322    234556666666666554221111110  000000          000123345


Q ss_pred             ccCEEeCCCCCCCCCCC----chhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCccc----Cch
Q 047285          355 SIETLDLSGNSKLGGKI----PTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGH----LTN  426 (552)
Q Consensus       355 ~L~~L~l~~n~~l~~~~----~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~----~~~  426 (552)
                      .|+++...+|. +....    ...|...+.|+.+.+..+.+...+. ......+.+++.|+.||+.+|.++..    +..
T Consensus       158 ~Lrv~i~~rNr-len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~-~al~eal~~~~~LevLdl~DNtft~egs~~Lak  235 (382)
T KOG1909|consen  158 KLRVFICGRNR-LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGV-TALAEALEHCPHLEVLDLRDNTFTLEGSVALAK  235 (382)
T ss_pred             ceEEEEeeccc-cccccHHHHHHHHHhccccceEEEecccccCchh-HHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence            66666666665 33221    1233334444444444333333222 11122333555667777777666532    233


Q ss_pred             hhcCCCCCcEEECCCCcccCCCcccc-----cCCCCCCEEeCCCCcCCcc----CcccccCCCCCCeeeCCCccc
Q 047285          427 QLLQFKSLHTLELGHNSLFGPLPPAL-----GELSSLKKLDLSNNMLNGF----IPLSLGKLSHLEYLDLSNNKL  492 (552)
Q Consensus       427 ~l~~l~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l  492 (552)
                      .+..+++|+.|++++|.+...-...+     ...|+|++|.+.+|.++..    +...+...|.|+.|+|++|.+
T Consensus       236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            44556666677777666653322222     2356666666666666421    222334456666666666666

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.07  E-value=3.7e-11  Score=108.66  Aligned_cols=128  Identities=30%  Similarity=0.255  Sum_probs=98.9

Q ss_pred             CCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCC
Q 047285          409 ALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLS  488 (552)
Q Consensus       409 ~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  488 (552)
                      .|+++|+++|.|+ .+.++..-.|+++.|++++|.+. .+ ..+..+++|+.||+++|.++ .+..+-..+-++++|.|+
T Consensus       285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La  360 (490)
T KOG1259|consen  285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLA  360 (490)
T ss_pred             hhhhccccccchh-hhhhhhhhccceeEEecccccee-ee-hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehh
Confidence            6888999999887 45566777888999999999887 33 33788889999999999887 455555567788999999


Q ss_pred             CcccceecCHHhhhcCCCCCEEEccCCeeeEE-cCCCCcCcccccEEecCCCCCCC
Q 047285          489 NNKLNASLSEIHFVNLTKLTWFSASGNSLILK-FNPNWVPPFQLETLQLRSCHLGP  543 (552)
Q Consensus       489 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~-~~~~~~~~~~L~~L~l~~n~~~~  543 (552)
                      +|.+ ..+.  .++.+-+|..||+++|+|... -...+++++-|+.+.+.+|++.+
T Consensus       361 ~N~i-E~LS--GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  361 QNKI-ETLS--GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             hhhH-hhhh--hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            9988 3343  377778888999999988632 23567888889999999998883

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.04  E-value=8.9e-11  Score=101.92  Aligned_cols=127  Identities=32%  Similarity=0.435  Sum_probs=45.2

Q ss_pred             ccCCCCCCEEeCCCCcCCCCccCcccC-CCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCcccc
Q 047285          122 LVDLKHLIHLDLSGNDFEGIQIPKYLG-SLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWL  200 (552)
Q Consensus       122 l~~l~~L~~L~Ls~n~~~~~~~p~~~~-~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l  200 (552)
                      +.+...+++|+|.+|.|+.  + +.++ .+.+|+.|++++|.++. ++ .+..+++|++|++++|.++.++..      +
T Consensus        15 ~~n~~~~~~L~L~~n~I~~--I-e~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~i~~~------l   83 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQIST--I-ENLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISSISEG------L   83 (175)
T ss_dssp             ------------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S-CHH------H
T ss_pred             ccccccccccccccccccc--c-cchhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCccccc------h
Confidence            4455678899999998874  3 3455 57889999999998873 33 577788889999998888775321      2


Q ss_pred             -CCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCC---CcccCCCCCceee
Q 047285          201 -SGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPP---LLSANFSSLKALH  260 (552)
Q Consensus       201 -~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~---~~~~~l~~L~~L~  260 (552)
                       ..+++|++|++++|++..... ...+..+++|++|++.+|+++....   ..+..+|+|+.||
T Consensus        84 ~~~lp~L~~L~L~~N~I~~l~~-l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD  146 (175)
T PF14580_consen   84 DKNLPNLQELYLSNNKISDLNE-LEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD  146 (175)
T ss_dssp             HHH-TT--EEE-TTS---SCCC-CGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred             HHhCCcCCEEECcCCcCCChHH-hHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence             357788888888888877644 3455677888888888887764432   2233445555554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.04  E-value=3.9e-10  Score=114.32  Aligned_cols=197  Identities=35%  Similarity=0.434  Sum_probs=114.8

Q ss_pred             EEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCC-CCCEEeccCCCCCCCccccCCccccCCCCCCCE
Q 047285          130 HLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLS-NLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEH  208 (552)
Q Consensus       130 ~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~  208 (552)
                      .++++.+.+..  .+..+..++.++.|++.++.++ .+|.....+. +|+.|++++|.+..++.      .+..+++|+.
T Consensus        97 ~l~~~~~~~~~--~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~l~~------~~~~l~~L~~  167 (394)
T COG4886          97 SLDLNLNRLRS--NISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIESLPS------PLRNLPNLKN  167 (394)
T ss_pred             eeecccccccc--CchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchhhhhh------hhhccccccc
Confidence            56777766642  2344555677788888888777 5666666664 78888888777766531      2667777777


Q ss_pred             EeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCCccEEec
Q 047285          209 LDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDL  288 (552)
Q Consensus       209 L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L  288 (552)
                      |++++|++...   +......+.|+.|++++|.+...++..                            .....|+++.+
T Consensus       168 L~l~~N~l~~l---~~~~~~~~~L~~L~ls~N~i~~l~~~~----------------------------~~~~~L~~l~~  216 (394)
T COG4886         168 LDLSFNDLSDL---PKLLSNLSNLNNLDLSGNKISDLPPEI----------------------------ELLSALEELDL  216 (394)
T ss_pred             cccCCchhhhh---hhhhhhhhhhhheeccCCccccCchhh----------------------------hhhhhhhhhhh
Confidence            77777777653   222235566666777766665544421                            12233555555


Q ss_pred             cCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCCCCCC
Q 047285          289 SSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLG  368 (552)
Q Consensus       289 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~  368 (552)
                      ++|... ..+..+..+.++..+.+.+|++... +..++.++++++|++++|.++ .++.  ++...+++.|+++++. +.
T Consensus       217 ~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~-~~~~~~l~~l~~L~~s~n~i~-~i~~--~~~~~~l~~L~~s~n~-~~  290 (394)
T COG4886         217 SNNSII-ELLSSLSNLKNLSGLELSNNKLEDL-PESIGNLSNLETLDLSNNQIS-SISS--LGSLTNLRELDLSGNS-LS  290 (394)
T ss_pred             cCCcce-ecchhhhhcccccccccCCceeeec-cchhccccccceecccccccc-cccc--ccccCccCEEeccCcc-cc
Confidence            555322 2334455555555555555554432 344555566666666666665 3333  5566666667766665 44


Q ss_pred             CCCc
Q 047285          369 GKIP  372 (552)
Q Consensus       369 ~~~~  372 (552)
                      ...+
T Consensus       291 ~~~~  294 (394)
T COG4886         291 NALP  294 (394)
T ss_pred             ccch
Confidence            4433

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.02  E-value=4.1e-10  Score=114.18  Aligned_cols=199  Identities=36%  Similarity=0.492  Sum_probs=129.1

Q ss_pred             cEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCC-CCCEEEccCccceeecCccccCCCCccCEEeCC
Q 047285          284 VFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFN-DLEFLSVAWNSLQGTISSVGLENLTSIETLDLS  362 (552)
Q Consensus       284 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~  362 (552)
                      ..+++..+.+...+ ..+..++.++.|++.+|.++... ....... +|+.|++++|++. .++.. +..+++|+.|+++
T Consensus        96 ~~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~~i~-~~~~~~~~nL~~L~l~~N~i~-~l~~~-~~~l~~L~~L~l~  171 (394)
T COG4886          96 PSLDLNLNRLRSNI-SELLELTNLTSLDLDNNNITDIP-PLIGLLKSNLKELDLSDNKIE-SLPSP-LRNLPNLKNLDLS  171 (394)
T ss_pred             ceeeccccccccCc-hhhhcccceeEEecCCcccccCc-cccccchhhcccccccccchh-hhhhh-hhccccccccccC
Confidence            35777777664332 23455577888888888876543 3344453 7888888888776 44433 6677888888888


Q ss_pred             CCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCC
Q 047285          363 GNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHN  442 (552)
Q Consensus       363 ~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n  442 (552)
                      +|+ ++ .+|...+..                             +.|+.|++++|.+. .+|........|++|.+++|
T Consensus       172 ~N~-l~-~l~~~~~~~-----------------------------~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N  219 (394)
T COG4886         172 FND-LS-DLPKLLSNL-----------------------------SNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNN  219 (394)
T ss_pred             Cch-hh-hhhhhhhhh-----------------------------hhhhheeccCCccc-cCchhhhhhhhhhhhhhcCC
Confidence            876 44 333333222                             26777788888777 34444445556778888877


Q ss_pred             cccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcC
Q 047285          443 SLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFN  522 (552)
Q Consensus       443 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~  522 (552)
                      .+. ..+..+..+.++..+.+.+|++. .++..+..++++++|++++|.++. ++.  +....+++.|++++|.+....|
T Consensus       220 ~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~-i~~--~~~~~~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         220 SII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISS-ISS--LGSLTNLRELDLSGNSLSNALP  294 (394)
T ss_pred             cce-ecchhhhhcccccccccCCceee-eccchhccccccceeccccccccc-ccc--ccccCccCEEeccCccccccch
Confidence            544 45556677777777777777766 335666677777788887777743 332  6667777777777777765554


Q ss_pred             C
Q 047285          523 P  523 (552)
Q Consensus       523 ~  523 (552)
                      .
T Consensus       295 ~  295 (394)
T COG4886         295 L  295 (394)
T ss_pred             h
Confidence            3

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.01  E-value=2.4e-11  Score=112.36  Aligned_cols=249  Identities=20%  Similarity=0.188  Sum_probs=136.6

Q ss_pred             ccCCCCCCCEEeccCCCCCCCccccCCccccCCCCCCCEEeCCCCcCCCC-cch-------hhhcCCCCCCCEEEcCCCC
Q 047285          170 QLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKA-SDW-------LLVTNSLPSLKVLKLTKCQ  241 (552)
Q Consensus       170 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~-~~~-------~~~~~~~~~L~~L~l~~n~  241 (552)
                      .+..+..++.+++++|.++.-... ..-+.+.+.++|+..++++--.... ..+       ...+..+|+|++|+|++|-
T Consensus        25 ~~~~~~s~~~l~lsgnt~G~EAa~-~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA  103 (382)
T KOG1909|consen   25 ELEPMDSLTKLDLSGNTFGTEAAR-AIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA  103 (382)
T ss_pred             HhcccCceEEEeccCCchhHHHHH-HHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence            455667778888888765431110 0011244555666666664321110 011       1223445566666666665


Q ss_pred             CCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCCccEEeccCcccccc-------------CchhhhcccCCc
Q 047285          242 LCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQ-------------IPIGLRNLTSLR  308 (552)
Q Consensus       242 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~-------------~~~~l~~l~~L~  308 (552)
                      +....+..                       +...+.++..|++|.|.+|.+...             .....+.-++|+
T Consensus       104 ~G~~g~~~-----------------------l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lr  160 (382)
T KOG1909|consen  104 FGPKGIRG-----------------------LEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLR  160 (382)
T ss_pred             cCccchHH-----------------------HHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceE
Confidence            54332221                       111344556666666666654311             111223446778


Q ss_pred             EEeccCCCCCCCCC----ccCCCCCCCCEEEccCccceee---cCccccCCCCccCEEeCCCCCCCCCCCchhHhhcccC
Q 047285          309 HLDLRFNYFNSTTP----GWLSKFNDLEFLSVAWNSLQGT---ISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKL  381 (552)
Q Consensus       309 ~L~l~~n~l~~~~~----~~l~~l~~L~~L~l~~n~l~~~---~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L  381 (552)
                      ++...+|++.....    ..+...+.|+.+.+..|.+...   ....++..+++|++||+.+|. ++......+...   
T Consensus       161 v~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt-ft~egs~~Laka---  236 (382)
T KOG1909|consen  161 VFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT-FTLEGSVALAKA---  236 (382)
T ss_pred             EEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccch-hhhHHHHHHHHH---
Confidence            88888877764432    2345567788888887766421   223346778888888888887 654433332221   


Q ss_pred             ceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhh-----cCCCCCcEEECCCCcccC----CCcccc
Q 047285          382 TSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQL-----LQFKSLHTLELGHNSLFG----PLPPAL  452 (552)
Q Consensus       382 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l-----~~l~~L~~L~L~~n~l~~----~~~~~l  452 (552)
                                            ++.++.|++|++++|.+...-...+     ...|+|+.|.+.+|.++-    .+...+
T Consensus       237 ----------------------L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~  294 (382)
T KOG1909|consen  237 ----------------------LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACM  294 (382)
T ss_pred             ----------------------hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHH
Confidence                                  1122367777777777664433222     225778888888887762    123344


Q ss_pred             cCCCCCCEEeCCCCcC
Q 047285          453 GELSSLKKLDLSNNML  468 (552)
Q Consensus       453 ~~l~~L~~L~L~~n~l  468 (552)
                      ...+.|+.|++++|.+
T Consensus       295 ~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  295 AEKPDLEKLNLNGNRL  310 (382)
T ss_pred             hcchhhHHhcCCcccc
Confidence            5577888888888887

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.99  E-value=3.1e-10  Score=123.03  Aligned_cols=106  Identities=32%  Similarity=0.363  Sum_probs=57.7

Q ss_pred             CCCCEEeCCCCc--CCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCC
Q 047285          126 KHLIHLDLSGND--FEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGL  203 (552)
Q Consensus       126 ~~L~~L~Ls~n~--~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l  203 (552)
                      +.|++|-+.+|.  +.. ...++|..++.|++|||++|.--+.+|..|+++-+||+|+++++.+..+|..      +.++
T Consensus       545 ~~L~tLll~~n~~~l~~-is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~------l~~L  617 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLLE-ISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSG------LGNL  617 (889)
T ss_pred             CccceEEEeecchhhhh-cCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchH------HHHH
Confidence            356666666654  332 1233455666666666666655556666666666666666666666555543      5555


Q ss_pred             CCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCC
Q 047285          204 YMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKC  240 (552)
Q Consensus       204 ~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n  240 (552)
                      ++|.+|++..+.....  ++.....+++||+|.+...
T Consensus       618 k~L~~Lnl~~~~~l~~--~~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  618 KKLIYLNLEVTGRLES--IPGILLELQSLRVLRLPRS  652 (889)
T ss_pred             Hhhheecccccccccc--ccchhhhcccccEEEeecc
Confidence            5566665555433221  1223334555555555443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.97  E-value=5.7e-10  Score=96.92  Aligned_cols=129  Identities=31%  Similarity=0.404  Sum_probs=40.9

Q ss_pred             CCCCCCCEEeCCCCcCCCCCccccC-CCCCCCEEeccCCCCCCCccccCCccccCCCCCCCEEeCCCCcCCCCcchhhhc
Q 047285          148 GSLENLRYLNLSGAKFAGMIPLQLG-NLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVT  226 (552)
Q Consensus       148 ~~l~~L~~L~L~~~~~~~~lp~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~  226 (552)
                      .+..++++|+|++|.++. + +.++ .+.+|+.|++++|.++.++       .+..++.|+.|++++|.++.....  ..
T Consensus        16 ~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l~-------~l~~L~~L~~L~L~~N~I~~i~~~--l~   84 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKLE-------GLPGLPRLKTLDLSNNRISSISEG--LD   84 (175)
T ss_dssp             ----------------------S--TT-TT--EEE-TTS--S--T-------T----TT--EEE--SS---S-CHH--HH
T ss_pred             cccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCcccc-------CccChhhhhhcccCCCCCCccccc--hH
Confidence            345567888888888873 3 3455 4778888888888776643       255677777777777777664211  11


Q ss_pred             CCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCCccEEeccCccccccC---chhhhc
Q 047285          227 NSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQI---PIGLRN  303 (552)
Q Consensus       227 ~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~---~~~l~~  303 (552)
                      ..+|+|++|++++|.+.+....                          ..+..+++|++|++.+|+++...   ...+..
T Consensus        85 ~~lp~L~~L~L~~N~I~~l~~l--------------------------~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~  138 (175)
T PF14580_consen   85 KNLPNLQELYLSNNKISDLNEL--------------------------EPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYK  138 (175)
T ss_dssp             HH-TT--EEE-TTS---SCCCC--------------------------GGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH
T ss_pred             HhCCcCCEEECcCCcCCChHHh--------------------------HHHHcCCCcceeeccCCcccchhhHHHHHHHH
Confidence            2356666666666665432210                          14556677777777777766331   123456


Q ss_pred             ccCCcEEecc
Q 047285          304 LTSLRHLDLR  313 (552)
Q Consensus       304 l~~L~~L~l~  313 (552)
                      +|+|+.||-.
T Consensus       139 lP~Lk~LD~~  148 (175)
T PF14580_consen  139 LPSLKVLDGQ  148 (175)
T ss_dssp             -TT-SEETTE
T ss_pred             cChhheeCCE
Confidence            7777777654

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.94  E-value=2e-10  Score=104.03  Aligned_cols=130  Identities=26%  Similarity=0.311  Sum_probs=78.7

Q ss_pred             CCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCC
Q 047285          202 GLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLR  281 (552)
Q Consensus       202 ~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~  281 (552)
                      ....|+.+|+|+|.++.   +..+..-.|.++.|+++.|.+.....  ++.+++|+.||+++|.++... .   |-..+-
T Consensus       282 TWq~LtelDLS~N~I~~---iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~-G---wh~KLG  352 (490)
T KOG1259|consen  282 TWQELTELDLSGNLITQ---IDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECV-G---WHLKLG  352 (490)
T ss_pred             hHhhhhhccccccchhh---hhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhhh-h---hHhhhc
Confidence            34557777777777765   34445556777777777777665443  556667777777776654321 1   444566


Q ss_pred             CccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCC-CccCCCCCCCCEEEccCccce
Q 047285          282 NLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTT-PGWLSKFNDLEFLSVAWNSLQ  342 (552)
Q Consensus       282 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~  342 (552)
                      +++.|.|+.|.+..  ...++.+-+|..||+++|++.... ...++++|.|+++.+.+|.+.
T Consensus       353 NIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  353 NIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             CEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence            77777777776642  234566666777777777665322 234555556666655555554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.87  E-value=1.5e-09  Score=117.82  Aligned_cols=279  Identities=23%  Similarity=0.218  Sum_probs=148.8

Q ss_pred             cCCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCC--CCCCCCCcccCCCCCceeecCCCCCCCCCccccccc
Q 047285          200 LSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQ--LCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWV  277 (552)
Q Consensus       200 l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~--~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~  277 (552)
                      .......+.+.+-+|.+.....    -..++.|++|-+.+|.  +.......|..++.|++||+++|.-.+.+|.   .+
T Consensus       519 ~~~~~~~rr~s~~~~~~~~~~~----~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~---~I  591 (889)
T KOG4658|consen  519 VKSWNSVRRMSLMNNKIEHIAG----SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS---SI  591 (889)
T ss_pred             ccchhheeEEEEeccchhhccC----CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCCh---HH
Confidence            3344555666666665543211    1245578888888876  5555566677788888888888776677777   77


Q ss_pred             cCCCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccce-eecCccccCCCCcc
Q 047285          278 FGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQ-GTISSVGLENLTSI  356 (552)
Q Consensus       278 ~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~l~~l~~L  356 (552)
                      +.+-+|++|+++++.+. .+|..+.++..|.+|++..+.....++.....+.+|++|.+...... +......+..+.+|
T Consensus       592 ~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L  670 (889)
T KOG4658|consen  592 GELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHL  670 (889)
T ss_pred             hhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccch
Confidence            78888888888888877 67888888888888888877765555666666888888887654311 11111114455555


Q ss_pred             CEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcC------
Q 047285          357 ETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQ------  430 (552)
Q Consensus       357 ~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~------  430 (552)
                      +.+...... .  .+-..+..+.+|..........  +........+...+.+|+.|.+.++.+..........      
T Consensus       671 ~~ls~~~~s-~--~~~e~l~~~~~L~~~~~~l~~~--~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~  745 (889)
T KOG4658|consen  671 ENLSITISS-V--LLLEDLLGMTRLRSLLQSLSIE--GCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLC  745 (889)
T ss_pred             hhheeecch-h--HhHhhhhhhHHHHHHhHhhhhc--ccccceeecccccccCcceEEEEcCCCchhhcccccccchhhh
Confidence            555554332 1  1222222233222111111100  0000111122334556777777777665322211111      


Q ss_pred             CCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCccc
Q 047285          431 FKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKL  492 (552)
Q Consensus       431 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  492 (552)
                      ++++..+.+.+|... ..+.+....++|+.|.+..+.....+......+..+..+-+..+.+
T Consensus       746 f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~  806 (889)
T KOG4658|consen  746 FPNLSKVSILNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKL  806 (889)
T ss_pred             HHHHHHHHhhccccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEeccccc
Confidence            222333333333222 2223333456666677666665444443334444444443444433

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.84  E-value=4.4e-09  Score=68.44  Aligned_cols=40  Identities=48%  Similarity=0.981  Sum_probs=30.7

Q ss_pred             HHHHHHHHHhHhcCC-CCCCCCCCCCCCC-CCCcccCceEec
Q 047285           39 DSEREALLKLKQDLI-DPSNRLASWNTGD-GDCCKWAGVFCS   78 (552)
Q Consensus        39 ~~~~~~l~~~~~~~~-~~~~~~~~W~~~~-~~~c~w~gv~c~   78 (552)
                      ++|++||++||+++. ++.+.+.+|+... .+||.|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence            689999999999998 4668899999743 799999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.72  E-value=1.3e-09  Score=110.66  Aligned_cols=103  Identities=36%  Similarity=0.418  Sum_probs=65.8

Q ss_pred             CCCCceeecCCCCCCCCCccccccccCCCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCC
Q 047285          253 FSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLE  332 (552)
Q Consensus       253 l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  332 (552)
                      +..++.+.+..|.+.... .   .+..+++|+.+++.+|.+.. +...+..+++|++|++++|.++...+  +..++.|+
T Consensus        71 l~~l~~l~l~~n~i~~~~-~---~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~  143 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAKIL-N---HLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLK  143 (414)
T ss_pred             hHhHHhhccchhhhhhhh-c---ccccccceeeeeccccchhh-cccchhhhhcchheeccccccccccc--hhhccchh
Confidence            344444555555444311 1   35566777788888877763 22226667888888888888776543  45566688


Q ss_pred             EEEccCccceeecCccccCCCCccCEEeCCCCC
Q 047285          333 FLSVAWNSLQGTISSVGLENLTSIETLDLSGNS  365 (552)
Q Consensus       333 ~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~  365 (552)
                      .|++++|.+. .+..  +..++.|+.+++++|.
T Consensus       144 ~L~l~~N~i~-~~~~--~~~l~~L~~l~l~~n~  173 (414)
T KOG0531|consen  144 ELNLSGNLIS-DISG--LESLKSLKLLDLSYNR  173 (414)
T ss_pred             hheeccCcch-hccC--CccchhhhcccCCcch
Confidence            8888888776 3333  5557788888888886

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.69  E-value=9.9e-09  Score=73.12  Aligned_cols=59  Identities=39%  Similarity=0.508  Sum_probs=32.3

Q ss_pred             CCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCc
Q 047285          409 ALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNM  467 (552)
Q Consensus       409 ~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  467 (552)
                      +|++|++++|+++...+..|..+++|++|++++|++....+..|..+++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            45555555555555444555555555555555555554444455555555555555554

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.68  E-value=9e-09  Score=73.35  Aligned_cols=59  Identities=42%  Similarity=0.642  Sum_probs=29.2

Q ss_pred             CCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcc
Q 047285          433 SLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNK  491 (552)
Q Consensus       433 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  491 (552)
                      +|++|++++|+++...+..|..+++|++|++++|.++...+..|.++++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            45555555555553333444555555555555555543334444555555555555544

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.66  E-value=2.1e-09  Score=109.10  Aligned_cols=129  Identities=33%  Similarity=0.361  Sum_probs=75.0

Q ss_pred             CCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCC
Q 047285          124 DLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGL  203 (552)
Q Consensus       124 ~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l  203 (552)
                      .+..++.+++..|.+.  .+-..++.+++|++|++.+|++.. +...+..+++|++|++++|.|+.+..       +..+
T Consensus        70 ~l~~l~~l~l~~n~i~--~~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~~-------l~~l  139 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIA--KILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLEG-------LSTL  139 (414)
T ss_pred             HhHhHHhhccchhhhh--hhhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccccccc-------hhhc
Confidence            4555666666666665  233445666777777777777763 33236667777777777776655432       4555


Q ss_pred             CCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCC-CcccCCCCCceeecCCCCCC
Q 047285          204 YMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPP-LLSANFSSLKALHLAINNFD  267 (552)
Q Consensus       204 ~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~  267 (552)
                      +.|+.|++++|.++.+..    +..++.|+.+++++|.+....+ . ...+.+++.+++..|.+.
T Consensus       140 ~~L~~L~l~~N~i~~~~~----~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  140 TLLKELNLSGNLISDISG----LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR  199 (414)
T ss_pred             cchhhheeccCcchhccC----CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence            557777777776665422    2235666666666666655444 2 344455555555555443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.59  E-value=3e-10  Score=102.84  Aligned_cols=183  Identities=26%  Similarity=0.233  Sum_probs=102.4

Q ss_pred             CCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCC-CCCCccccCCccccCCCCC
Q 047285          127 HLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTF-LSNYDLHVDSLSWLSGLYM  205 (552)
Q Consensus       127 ~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~l~~  205 (552)
                      .|++|||+...++..++-..+..|.+|+.|.|.++++.+.+-..+.+-.+|+.|+++.+. +++.....    .+.+++.
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~l----l~~scs~  261 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQL----LLSSCSR  261 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHH----HHHhhhh
Confidence            478888888777654555666777888888888888877777777777778888877653 33321110    1344555


Q ss_pred             CCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCCccE
Q 047285          206 LEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVF  285 (552)
Q Consensus       206 L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~  285 (552)
                      |..|++++|.+....--.....--+                        +|+.|+++++.-.-.......-...+++|.+
T Consensus       262 L~~LNlsWc~l~~~~Vtv~V~hise------------------------~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~  317 (419)
T KOG2120|consen  262 LDELNLSWCFLFTEKVTVAVAHISE------------------------TLTQLNLSGYRRNLQKSHLSTLVRRCPNLVH  317 (419)
T ss_pred             HhhcCchHhhccchhhhHHHhhhch------------------------hhhhhhhhhhHhhhhhhHHHHHHHhCCceee
Confidence            5555555554433210001111123                        3444444432111000010002346777777


Q ss_pred             EeccCcc-ccccCchhhhcccCCcEEeccCCCCCCCCCcc---CCCCCCCCEEEccCc
Q 047285          286 IDLSSNQ-FQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGW---LSKFNDLEFLSVAWN  339 (552)
Q Consensus       286 L~L~~n~-~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~---l~~l~~L~~L~l~~n  339 (552)
                      |||++|. ++......+.+++.|++|.++.|+.  .+|..   +...|.|.+|++.++
T Consensus       318 LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  318 LDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             eccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence            7777763 3333344566677788888877763  34433   356678888887765

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.57  E-value=1.4e-09  Score=98.46  Aligned_cols=182  Identities=21%  Similarity=0.208  Sum_probs=117.4

Q ss_pred             CCccEEeccCcccccc-CchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCcc-ceeecCccccCCCCccCE
Q 047285          281 RNLVFIDLSSNQFQGQ-IPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNS-LQGTISSVGLENLTSIET  358 (552)
Q Consensus       281 ~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~l~~l~~L~~  358 (552)
                      +.|+++||++..++.. +-..+..|.+|+.|.+.++++.+.+...+++-.+|+.|+++.+. ++..-....+.+++.|.+
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            3578888887766532 23346778888888888888888777777777888888888753 332222223667888888


Q ss_pred             EeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcC---cccCchhhcCCCCCc
Q 047285          359 LDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQI---SGHLTNQLLQFKSLH  435 (552)
Q Consensus       359 L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~---~~~~~~~l~~l~~L~  435 (552)
                      |+++.|..++..+-..+.+..                            ++|..|+++++.-   ...+..-...+++|.
T Consensus       265 LNlsWc~l~~~~Vtv~V~his----------------------------e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~  316 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAVAHIS----------------------------ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLV  316 (419)
T ss_pred             cCchHhhccchhhhHHHhhhc----------------------------hhhhhhhhhhhHhhhhhhHHHHHHHhCCcee
Confidence            888888633322222222222                            2677777777631   112222335678888


Q ss_pred             EEECCCCcc-cCCCcccccCCCCCCEEeCCCCcCCccCccc---ccCCCCCCeeeCCCccc
Q 047285          436 TLELGHNSL-FGPLPPALGELSSLKKLDLSNNMLNGFIPLS---LGKLSHLEYLDLSNNKL  492 (552)
Q Consensus       436 ~L~L~~n~l-~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~L~~L~L~~n~l  492 (552)
                      .|||++|.. +...-..|..++.|++|.++.|...  +|..   +...|+|.+|++.+|--
T Consensus       317 ~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~vs  375 (419)
T KOG2120|consen  317 HLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCVS  375 (419)
T ss_pred             eeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccccC
Confidence            888887753 3333445667888888888888743  4443   45678888888887754

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.50  E-value=2.8e-08  Score=90.25  Aligned_cols=88  Identities=20%  Similarity=0.170  Sum_probs=59.1

Q ss_pred             CCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCC
Q 047285          203 LYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRN  282 (552)
Q Consensus       203 l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~  282 (552)
                      ++.++.+||.+|.++.+..+...+.++|+|+.|+++.|.+...+...-....+|++|-+.+..+.-.....  .+..++.
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s--~l~~lP~  147 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTS--SLDDLPK  147 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhh--hhhcchh
Confidence            55667777777777777777788888888888888888877655544355667777777666554322111  3445666


Q ss_pred             ccEEeccCcc
Q 047285          283 LVFIDLSSNQ  292 (552)
Q Consensus       283 L~~L~L~~n~  292 (552)
                      ++.|+++.|.
T Consensus       148 vtelHmS~N~  157 (418)
T KOG2982|consen  148 VTELHMSDNS  157 (418)
T ss_pred             hhhhhhccch
Confidence            6777777663

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.35  E-value=5.9e-08  Score=87.05  Aligned_cols=141  Identities=18%  Similarity=0.129  Sum_probs=71.3

Q ss_pred             CCccCEEeCCCCCCCCCCCch---hHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCccc----Cc
Q 047285          353 LTSIETLDLSGNSKLGGKIPT---SFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGH----LT  425 (552)
Q Consensus       353 l~~L~~L~l~~n~~l~~~~~~---~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~----~~  425 (552)
                      -|.|+++....|+...|.--.   .+..-..|+.+.+..+.+...++..+.......+.+|+.||+.+|.++-.    +.
T Consensus       156 kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La  235 (388)
T COG5238         156 KPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLA  235 (388)
T ss_pred             CCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHH
Confidence            356666666666522221111   11112233444444444333333333233333455777777777776632    23


Q ss_pred             hhhcCCCCCcEEECCCCcccCCCcccc------cCCCCCCEEeCCCCcCCccCccc-------ccCCCCCCeeeCCCccc
Q 047285          426 NQLLQFKSLHTLELGHNSLFGPLPPAL------GELSSLKKLDLSNNMLNGFIPLS-------LGKLSHLEYLDLSNNKL  492 (552)
Q Consensus       426 ~~l~~l~~L~~L~L~~n~l~~~~~~~l------~~l~~L~~L~L~~n~l~~~~~~~-------~~~l~~L~~L~L~~n~l  492 (552)
                      ..++.++.|+.|.+.+|-++..-..++      ...|+|+.|...+|.+.+.+...       -.++|-|..|.+.+|++
T Consensus       236 ~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~  315 (388)
T COG5238         236 DALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRI  315 (388)
T ss_pred             HHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcc
Confidence            344556667777777776653322221      13466777777777664332221       13456666666666666


Q ss_pred             c
Q 047285          493 N  493 (552)
Q Consensus       493 ~  493 (552)
                      .
T Consensus       316 ~  316 (388)
T COG5238         316 K  316 (388)
T ss_pred             h
Confidence            3

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.32  E-value=9.4e-08  Score=86.90  Aligned_cols=190  Identities=21%  Similarity=0.211  Sum_probs=104.4

Q ss_pred             CCCCccEEeccCccccc--cCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCcc
Q 047285          279 GLRNLVFIDLSSNQFQG--QIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSI  356 (552)
Q Consensus       279 ~l~~L~~L~L~~n~~~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L  356 (552)
                      .++.++.++|.+|.++.  ++...+.++|.|+.|+++.|.+...+.....-..+|+.|-+.+..+...-....+..+|.+
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            46778888888887763  2444567788888888888888765543323456788888877776654444446677788


Q ss_pred             CEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcc--cCchhhcCCCCC
Q 047285          357 ETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISG--HLTNQLLQFKSL  434 (552)
Q Consensus       357 ~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~--~~~~~l~~l~~L  434 (552)
                      +.|.++.|. +..              +.++-..  .+.          ..+.+.+|..-.|...-  ..-.--.-+|++
T Consensus       149 telHmS~N~-~rq--------------~n~Dd~c--~e~----------~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv  201 (418)
T KOG2982|consen  149 TELHMSDNS-LRQ--------------LNLDDNC--IED----------WSTEVLTLHQLPCLEQLWLNKNKLSRIFPNV  201 (418)
T ss_pred             hhhhhccch-hhh--------------hcccccc--ccc----------cchhhhhhhcCCcHHHHHHHHHhHHhhcccc
Confidence            888888774 210              0000000  000          00123333333332110  000011225667


Q ss_pred             cEEECCCCcccCC-CcccccCCCCCCEEeCCCCcCCcc-CcccccCCCCCCeeeCCCccccee
Q 047285          435 HTLELGHNSLFGP-LPPALGELSSLKKLDLSNNMLNGF-IPLSLGKLSHLEYLDLSNNKLNAS  495 (552)
Q Consensus       435 ~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~  495 (552)
                      ..+.+..|.+... -...+..+|.+--|+|+.|++..- -.+.+.++++|..|.++++++.+.
T Consensus       202 ~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~  264 (418)
T KOG2982|consen  202 NSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDP  264 (418)
T ss_pred             hheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccc
Confidence            7777777765421 223344556666666666666421 123455666677777777666543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.24  E-value=5.7e-08  Score=98.45  Aligned_cols=124  Identities=29%  Similarity=0.294  Sum_probs=56.4

Q ss_pred             CCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCccc-ccCCCCCCeeeCC
Q 047285          410 LESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLS-LGKLSHLEYLDLS  488 (552)
Q Consensus       410 L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~  488 (552)
                      |.+.+.++|.+. ...+++.-++.|+.|+|++|+++..  ..+..++.|++|||++|.+. .+|.. ...+. |+.|.++
T Consensus       166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lr  240 (1096)
T KOG1859|consen  166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLR  240 (1096)
T ss_pred             HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heeeeec
Confidence            444455555444 2223344445555555555555422  24445555555555555554 23321 11222 5555555


Q ss_pred             CcccceecCHHhhhcCCCCCEEEccCCeeeEEcCC-CCcCcccccEEecCCCCC
Q 047285          489 NNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNP-NWVPPFQLETLQLRSCHL  541 (552)
Q Consensus       489 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~~~~L~~L~l~~n~~  541 (552)
                      +|.++. +-  .+.++.+|+.||+++|-+.+-.-- -+..+..|+.|.+.||++
T Consensus       241 nN~l~t-L~--gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  241 NNALTT-LR--GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             ccHHHh-hh--hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            555532 21  244555555555555554432111 112233455555555554

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.20  E-value=9.7e-08  Score=76.75  Aligned_cols=139  Identities=23%  Similarity=0.262  Sum_probs=89.2

Q ss_pred             ccCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCC
Q 047285          355 SIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSL  434 (552)
Q Consensus       355 ~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L  434 (552)
                      .+..++++.|+ + +.+++....+.                          ....|..+++++|.+....+..-..++.+
T Consensus        28 E~h~ldLssc~-l-m~i~davy~l~--------------------------~~~el~~i~ls~N~fk~fp~kft~kf~t~   79 (177)
T KOG4579|consen   28 ELHFLDLSSCQ-L-MYIADAVYMLS--------------------------KGYELTKISLSDNGFKKFPKKFTIKFPTA   79 (177)
T ss_pred             Hhhhcccccch-h-hHHHHHHHHHh--------------------------CCceEEEEecccchhhhCCHHHhhccchh
Confidence            45667777776 3 24555555544                          22357778888888875544444556678


Q ss_pred             cEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccC
Q 047285          435 HTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASG  514 (552)
Q Consensus       435 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~  514 (552)
                      +.|++++|+++ .+|..+..++.|+.|+++.|++. ..|.-+..+.++-.|+..+|.. .+++-. +-.-...-..++.+
T Consensus        80 t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~-~eid~d-l~~s~~~al~~lgn  155 (177)
T KOG4579|consen   80 TTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENAR-AEIDVD-LFYSSLPALIKLGN  155 (177)
T ss_pred             hhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCcc-ccCcHH-HhccccHHHHHhcC
Confidence            88888888887 67777888888888888888887 4555555577788888888777 445542 21112222334466


Q ss_pred             CeeeEEcCCCC
Q 047285          515 NSLILKFNPNW  525 (552)
Q Consensus       515 n~~~~~~~~~~  525 (552)
                      +++.+..+...
T Consensus       156 epl~~~~~~kl  166 (177)
T KOG4579|consen  156 EPLGDETKKKL  166 (177)
T ss_pred             CcccccCcccc
Confidence            66666655443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.16  E-value=4.1e-08  Score=99.45  Aligned_cols=106  Identities=32%  Similarity=0.263  Sum_probs=53.3

Q ss_pred             CCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCC
Q 047285          202 GLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLR  281 (552)
Q Consensus       202 ~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~  281 (552)
                      -++.|+.|||+.|++..+    ..+..+++|++|++++|.+...+-.....+. |+.|.+++|.++...     .+.+++
T Consensus       185 ll~ale~LnLshNk~~~v----~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~-----gie~Lk  254 (1096)
T KOG1859|consen  185 LLPALESLNLSHNKFTKV----DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTLR-----GIENLK  254 (1096)
T ss_pred             HHHHhhhhccchhhhhhh----HHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhhh-----hHHhhh
Confidence            345566666666665542    2445556666666666665544443333333 555555555544321     334555


Q ss_pred             CccEEeccCccccccC-chhhhcccCCcEEeccCCCC
Q 047285          282 NLVFIDLSSNQFQGQI-PIGLRNLTSLRHLDLRFNYF  317 (552)
Q Consensus       282 ~L~~L~L~~n~~~~~~-~~~l~~l~~L~~L~l~~n~l  317 (552)
                      +|+.||+++|-+.+.- ...+..+..|+.|++.+|.+
T Consensus       255 sL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  255 SLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             hhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            5555666655444221 11233445555555555544

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.13  E-value=2.1e-07  Score=83.58  Aligned_cols=39  Identities=31%  Similarity=0.502  Sum_probs=22.4

Q ss_pred             ccCCCCCCEEeCCCCcCCCC---ccCcccCCCCCCCEEeCCC
Q 047285          122 LVDLKHLIHLDLSGNDFEGI---QIPKYLGSLENLRYLNLSG  160 (552)
Q Consensus       122 l~~l~~L~~L~Ls~n~~~~~---~~p~~~~~l~~L~~L~L~~  160 (552)
                      +..+..++.++||+|.|...   .+...+.+-.+|+..++++
T Consensus        26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd   67 (388)
T COG5238          26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSD   67 (388)
T ss_pred             HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhh
Confidence            44466777777777776541   1223344556666666654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.02  E-value=5.7e-06  Score=53.83  Aligned_cols=37  Identities=41%  Similarity=0.584  Sum_probs=20.9

Q ss_pred             CCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCC
Q 047285          152 NLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSN  189 (552)
Q Consensus       152 ~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~  189 (552)
                      +|++|++++|+++ .+|..+++|++|++|++++|.+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence            5666666666665 355456666666666666665554

...

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.96  E-value=2.4e-07  Score=88.21  Aligned_cols=110  Identities=22%  Similarity=0.228  Sum_probs=57.3

Q ss_pred             CCCCEEeCCCCcCCCC-ccCcccCCCCCCCEEeCCCCc-CCCCCcccc-CCCCCCCEEeccCCC-CCCCccccCCccccC
Q 047285          126 KHLIHLDLSGNDFEGI-QIPKYLGSLENLRYLNLSGAK-FAGMIPLQL-GNLSNLQYLDLSGTF-LSNYDLHVDSLSWLS  201 (552)
Q Consensus       126 ~~L~~L~Ls~n~~~~~-~~p~~~~~l~~L~~L~L~~~~-~~~~lp~~l-~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~  201 (552)
                      ..|+.|.+.++.-.+. .+-.....+++++.|++.+|. ++...-..+ ..+++|++|++..|. ++..-...    ...
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~----la~  213 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKY----LAE  213 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHH----HHH
Confidence            3678888888753332 223344578888888888875 222211222 357788888877642 33221110    123


Q ss_pred             CCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCC
Q 047285          202 GLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTK  239 (552)
Q Consensus       202 ~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~  239 (552)
                      .+++|++|+++++.......+......+..++.+...+
T Consensus       214 gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kG  251 (483)
T KOG4341|consen  214 GCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKG  251 (483)
T ss_pred             hhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcc
Confidence            46666666666664332223333334444444444444

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.94  E-value=2.3e-07  Score=88.43  Aligned_cols=86  Identities=26%  Similarity=0.261  Sum_probs=45.7

Q ss_pred             CCCCEEeccCCCCCCCccccCCcc-ccCCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCC-CCCCCCC-ccc
Q 047285          175 SNLQYLDLSGTFLSNYDLHVDSLS-WLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQ-LCHFPPL-LSA  251 (552)
Q Consensus       175 ~~L~~L~l~~n~l~~~~~~~~~~~-~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~-~~~  251 (552)
                      ..|+.|.++++.-..    ..++. ...+++++++|++.++...+..........|+.|++|++..|. ++...-. ...
T Consensus       138 g~lk~LSlrG~r~v~----~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~  213 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVG----DSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAE  213 (483)
T ss_pred             cccccccccccccCC----cchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHH
Confidence            457777777763111    11111 2346777777777777544443445555667777777777643 2222211 223


Q ss_pred             CCCCCceeecCCC
Q 047285          252 NFSSLKALHLAIN  264 (552)
Q Consensus       252 ~l~~L~~L~l~~n  264 (552)
                      .+++|++++++.+
T Consensus       214 gC~kL~~lNlSwc  226 (483)
T KOG4341|consen  214 GCRKLKYLNLSWC  226 (483)
T ss_pred             hhhhHHHhhhccC
Confidence            4555555555543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.90  E-value=5.8e-07  Score=72.37  Aligned_cols=136  Identities=24%  Similarity=0.312  Sum_probs=96.3

Q ss_pred             CCCEEEccCCcCcccCch---hhcCCCCCcEEECCCCcccCCCccccc-CCCCCCEEeCCCCcCCccCcccccCCCCCCe
Q 047285          409 ALESLDLSICQISGHLTN---QLLQFKSLHTLELGHNSLFGPLPPALG-ELSSLKKLDLSNNMLNGFIPLSLGKLSHLEY  484 (552)
Q Consensus       409 ~L~~L~ls~n~~~~~~~~---~l~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  484 (552)
                      .+..++|+.|++- .+++   .+.....|+..+|++|.+. ..|..|. ..+.++.|++++|.++ .+|..+..++.|+.
T Consensus        28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~  104 (177)
T KOG4579|consen   28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS  104 (177)
T ss_pred             Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence            4667888888765 2333   3445567788899999998 5555554 5568999999999998 68888999999999


Q ss_pred             eeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcccccEEecCCCCCCCCCCcccc
Q 047285          485 LDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLGPHFPSWLH  550 (552)
Q Consensus       485 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~iP~~l~  550 (552)
                      |+++.|++. ..|+ .+..+.++..|+..+|..- .+|..+......-..++.++.+.+.-|..++
T Consensus       105 lNl~~N~l~-~~p~-vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~klq  167 (177)
T KOG4579|consen  105 LNLRFNPLN-AEPR-VIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKLQ  167 (177)
T ss_pred             cccccCccc-cchH-HHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCccccc
Confidence            999999994 4566 4555888888998888765 3443333333344455577777766654443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.85  E-value=7.5e-05  Score=73.34  Aligned_cols=78  Identities=14%  Similarity=0.195  Sum_probs=53.4

Q ss_pred             ccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCC-CCCCCccccCCcccc
Q 047285          122 LVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGT-FLSNYDLHVDSLSWL  200 (552)
Q Consensus       122 l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l  200 (552)
                      +..++++++|++++|.++  .+|. +  -.+|++|.+++|.-...+|..+  .++|++|++++| .+..+|         
T Consensus        48 ~~~~~~l~~L~Is~c~L~--sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP---------  111 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE--SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP---------  111 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc--ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc---------
Confidence            556789999999999888  5673 1  2469999999875544667655  358899999887 444332         


Q ss_pred             CCCCCCCEEeCCCCcCCC
Q 047285          201 SGLYMLEHLDLSQMNLSK  218 (552)
Q Consensus       201 ~~l~~L~~L~ls~n~~~~  218 (552)
                         .+|+.|+++.+....
T Consensus       112 ---~sLe~L~L~~n~~~~  126 (426)
T PRK15386        112 ---ESVRSLEIKGSATDS  126 (426)
T ss_pred             ---cccceEEeCCCCCcc
Confidence               246666666554433

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.84  E-value=7.8e-06  Score=86.98  Aligned_cols=109  Identities=33%  Similarity=0.469  Sum_probs=66.0

Q ss_pred             CCCCEEeCCCCcCCCCccCcccC-CCCCCCEEeCCCCcCCCC-CccccCCCCCCCEEeccCCCCCCCccccCCccccCCC
Q 047285          126 KHLIHLDLSGNDFEGIQIPKYLG-SLENLRYLNLSGAKFAGM-IPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGL  203 (552)
Q Consensus       126 ~~L~~L~Ls~n~~~~~~~p~~~~-~l~~L~~L~L~~~~~~~~-lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l  203 (552)
                      .+|++||+++...-...-|..++ .+|.|++|.+.+-.+... .-.-..++|+|..||+|++.++.+       ..++.+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-------~GIS~L  194 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-------SGISRL  194 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-------HHHhcc
Confidence            46777777775433223444555 367788887777665422 122345677777888877766654       226677


Q ss_pred             CCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCC
Q 047285          204 YMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQL  242 (552)
Q Consensus       204 ~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~  242 (552)
                      ++|+.|.+.+-.+..... ...+-++++|+.||++....
T Consensus       195 knLq~L~mrnLe~e~~~~-l~~LF~L~~L~vLDIS~~~~  232 (699)
T KOG3665|consen  195 KNLQVLSMRNLEFESYQD-LIDLFNLKKLRVLDISRDKN  232 (699)
T ss_pred             ccHHHHhccCCCCCchhh-HHHHhcccCCCeeecccccc
Confidence            777777777766665422 23344566777777666543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.80  E-value=1.9e-05  Score=51.34  Aligned_cols=38  Identities=42%  Similarity=0.578  Sum_probs=32.9

Q ss_pred             CCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCC
Q 047285          126 KHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAG  165 (552)
Q Consensus       126 ~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~  165 (552)
                      ++|++|++++|+++  .+|..+++|++|++|++++|+++.
T Consensus         1 ~~L~~L~l~~N~i~--~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    1 KNLEELDLSNNQIT--DLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             TT-SEEEETSSS-S--SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             CcceEEEccCCCCc--ccCchHhCCCCCCEEEecCCCCCC
Confidence            57999999999999  578889999999999999999983

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.78  E-value=6.1e-06  Score=87.76  Aligned_cols=109  Identities=23%  Similarity=0.317  Sum_probs=62.0

Q ss_pred             CCCCEEeccCCCCCCCccccCCcc-ccC-CCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccC
Q 047285          175 SNLQYLDLSGTFLSNYDLHVDSLS-WLS-GLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSAN  252 (552)
Q Consensus       175 ~~L~~L~l~~n~l~~~~~~~~~~~-~l~-~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~  252 (552)
                      .+|++||+++...-.     ..++ .++ .+|.|+.|.+++-.+... +......++|+|+.||+++++++..  ..+++
T Consensus       122 ~nL~~LdI~G~~~~s-----~~W~~kig~~LPsL~sL~i~~~~~~~~-dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~  193 (699)
T KOG3665|consen  122 QNLQHLDISGSELFS-----NGWPKKIGTMLPSLRSLVISGRQFDND-DFSQLCASFPNLRSLDISGTNISNL--SGISR  193 (699)
T ss_pred             HhhhhcCccccchhh-----ccHHHHHhhhCcccceEEecCceecch-hHHHHhhccCccceeecCCCCccCc--HHHhc
Confidence            578888887753110     1111 122 477777777777666553 3455566777777777777776654  44556


Q ss_pred             CCCCceeecCCCCCCCCCccccccccCCCCccEEeccCccc
Q 047285          253 FSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQF  293 (552)
Q Consensus       253 l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~  293 (552)
                      +++|+.|.+.+-.+....  ....++++++|++||+|....
T Consensus       194 LknLq~L~mrnLe~e~~~--~l~~LF~L~~L~vLDIS~~~~  232 (699)
T KOG3665|consen  194 LKNLQVLSMRNLEFESYQ--DLIDLFNLKKLRVLDISRDKN  232 (699)
T ss_pred             cccHHHHhccCCCCCchh--hHHHHhcccCCCeeecccccc
Confidence            666666666554444311  001445566666666665543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.69  E-value=5.9e-05  Score=65.31  Aligned_cols=106  Identities=25%  Similarity=0.232  Sum_probs=66.7

Q ss_pred             CCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEE
Q 047285          432 KSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFS  511 (552)
Q Consensus       432 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  511 (552)
                      .+...+||++|.+.. + ..|..++.|.+|.+++|+++..-|..-.-+|+|..|.+.+|++...-.-..+..||+|++|.
T Consensus        42 d~~d~iDLtdNdl~~-l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRK-L-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             cccceecccccchhh-c-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence            455677777777752 2 34566777888888888877555554445677888888887764321111366778888888


Q ss_pred             ccCCeeeEEcC---CCCcCcccccEEecCCC
Q 047285          512 ASGNSLILKFN---PNWVPPFQLETLQLRSC  539 (552)
Q Consensus       512 L~~n~~~~~~~---~~~~~~~~L~~L~l~~n  539 (552)
                      +-+|++...--   -.+..+++|+.||+++-
T Consensus       120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             ecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            88887763311   02234567777777653

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.55  E-value=0.00011  Score=63.71  Aligned_cols=86  Identities=24%  Similarity=0.247  Sum_probs=49.8

Q ss_pred             CCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCCCC
Q 047285          126 KHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYM  205 (552)
Q Consensus       126 ~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~  205 (552)
                      .+...+||++|.+..  + +.|..++.|.+|.+++|+++..-|.--.-+++|+.|.+.+|.+.++.    .+..+..+++
T Consensus        42 d~~d~iDLtdNdl~~--l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~----dl~pLa~~p~  114 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRK--L-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELG----DLDPLASCPK  114 (233)
T ss_pred             cccceecccccchhh--c-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhh----hcchhccCCc
Confidence            355667777776652  1 34556677777777777777544443344566777777777665532    2222455555


Q ss_pred             CCEEeCCCCcCCC
Q 047285          206 LEHLDLSQMNLSK  218 (552)
Q Consensus       206 L~~L~ls~n~~~~  218 (552)
                      |++|.+-+|.++.
T Consensus       115 L~~Ltll~Npv~~  127 (233)
T KOG1644|consen  115 LEYLTLLGNPVEH  127 (233)
T ss_pred             cceeeecCCchhc
Confidence            5555555554443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.54  E-value=5.2e-05  Score=68.54  Aligned_cols=117  Identities=26%  Similarity=0.319  Sum_probs=76.2

Q ss_pred             cccCccccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCC--cCCCCCccccCCCCCCCEEeccCCCCCCCccc
Q 047285          116 GKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGA--KFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLH  193 (552)
Q Consensus       116 ~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~--~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~  193 (552)
                      |.+....-.+..|+.|++.+..++..   ..+-.+++|++|.++.|  ++.+.++.-...+|+|++|++++|++..+   
T Consensus        33 g~~~gl~d~~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~l---  106 (260)
T KOG2739|consen   33 GKLGGLTDEFVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDL---  106 (260)
T ss_pred             CCcccccccccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccc---
Confidence            33444455566677777766655532   23456789999999999  77777776677789999999999987652   


Q ss_pred             cCCccccCCCCCCCEEeCCCCcCCCCcch-hhhcCCCCCCCEEEcCC
Q 047285          194 VDSLSWLSGLYMLEHLDLSQMNLSKASDW-LLVTNSLPSLKVLKLTK  239 (552)
Q Consensus       194 ~~~~~~l~~l~~L~~L~ls~n~~~~~~~~-~~~~~~~~~L~~L~l~~  239 (552)
                       ..++.+..+.+|..|++..|..+...+. -..+.-+++|++|+-..
T Consensus       107 -stl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d  152 (260)
T KOG2739|consen  107 -STLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD  152 (260)
T ss_pred             -cccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence             3344467777788888887766553221 22334456666665433

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.49  E-value=0.00022  Score=70.11  Aligned_cols=118  Identities=19%  Similarity=0.208  Sum_probs=73.9

Q ss_pred             CCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCee
Q 047285          406 GAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYL  485 (552)
Q Consensus       406 ~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  485 (552)
                      .+..++.|++++|.++. +|.   -.++|+.|.+++|.-...+|..+  .++|+.|++++|.....+|.      +|+.|
T Consensus        50 ~~~~l~~L~Is~c~L~s-LP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L  117 (426)
T PRK15386         50 EARASGRLYIKDCDIES-LPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRSL  117 (426)
T ss_pred             HhcCCCEEEeCCCCCcc-cCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccceE
Confidence            35689999999998874 441   24579999999876555667655  35899999999943335554      46667


Q ss_pred             eCCCccc--ceecCHHhhhcC------------------CCCCEEEccCCeeeEEcCCCCcCcccccEEecCCC
Q 047285          486 DLSNNKL--NASLSEIHFVNL------------------TKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSC  539 (552)
Q Consensus       486 ~L~~n~l--~~~~~~~~~~~l------------------~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n  539 (552)
                      +++.+..  .+.+|. .+..+                  ++|++|++++|... ..|..+-  .+|+.|+++.|
T Consensus       118 ~L~~n~~~~L~~LPs-sLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        118 EIKGSATDSIKNVPN-GLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             EeCCCCCcccccCcc-hHhheeccccccccccccccccCCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence            7766543  234444 23222                  35666777766644 2232222  36777777655

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.97  E-value=0.0001  Score=76.96  Aligned_cols=65  Identities=29%  Similarity=0.178  Sum_probs=32.8

Q ss_pred             cccCCcEEeccCCC-CCCCCCccCCC-CCCCCEEEccCcc-ceeecCccccCCCCccCEEeCCCCCCC
Q 047285          303 NLTSLRHLDLRFNY-FNSTTPGWLSK-FNDLEFLSVAWNS-LQGTISSVGLENLTSIETLDLSGNSKL  367 (552)
Q Consensus       303 ~l~~L~~L~l~~n~-l~~~~~~~l~~-l~~L~~L~l~~n~-l~~~~~~~~l~~l~~L~~L~l~~n~~l  367 (552)
                      .+++|+.++++.+. +++..-..+.. +++|+.|.+.++. +++.........++.|++|++++|..+
T Consensus       241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence            34555555555554 33332222222 5566666655554 333322222445666777777776643

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.92  E-value=3.1e-05  Score=70.26  Aligned_cols=83  Identities=25%  Similarity=0.316  Sum_probs=55.0

Q ss_pred             cCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCC
Q 047285          123 VDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSG  202 (552)
Q Consensus       123 ~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~  202 (552)
                      ..+.+.+.|++.++.+.++   ....+|+.|+.|.|+-|+|+..-  .+..|++|++|+|..|.|..+.    .+.++.+
T Consensus        16 sdl~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sld----EL~YLkn   86 (388)
T KOG2123|consen   16 SDLENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLD----ELEYLKN   86 (388)
T ss_pred             hHHHHhhhhcccCCCccHH---HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHH----HHHHHhc
Confidence            3466778888888888765   34457888888888888887432  3677888888888877665542    2333445


Q ss_pred             CCCCCEEeCCCC
Q 047285          203 LYMLEHLDLSQM  214 (552)
Q Consensus       203 l~~L~~L~ls~n  214 (552)
                      +++|+.|.|..|
T Consensus        87 lpsLr~LWL~EN   98 (388)
T KOG2123|consen   87 LPSLRTLWLDEN   98 (388)
T ss_pred             CchhhhHhhccC
Confidence            555555555444

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.78  E-value=0.0029  Score=52.59  Aligned_cols=36  Identities=17%  Similarity=0.397  Sum_probs=11.8

Q ss_pred             CCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCC
Q 047285          325 LSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSG  363 (552)
Q Consensus       325 l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~  363 (552)
                      +..+++|+.+.+..+ +. .++...+.++ +++.+.+..
T Consensus        77 F~~~~~l~~i~~~~~-~~-~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   77 FSNCTNLKNIDIPSN-IT-EIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             TTT-TTECEEEETTT--B-EEHTTTTTT--T--EEE-TT
T ss_pred             ccccccccccccCcc-cc-EEchhhhcCC-CceEEEECC
Confidence            333444444444332 22 2333334443 444444443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.77  E-value=0.0039  Score=51.80  Aligned_cols=105  Identities=14%  Similarity=0.157  Sum_probs=41.5

Q ss_pred             cCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCCccEEeccCccccccCchhhhccc
Q 047285          226 TNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLT  305 (552)
Q Consensus       226 ~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~  305 (552)
                      +..+++|+.+.+.. .+.......|..+++|+.+.+..+ +......   .+..+++++.+.+.+ .+.......+..++
T Consensus         8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~---~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~   81 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDN---AFSNCKSLESITFPN-NLKSIGDNAFSNCT   81 (129)
T ss_dssp             TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TT---TTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred             HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cccccee---eeecccccccccccc-cccccccccccccc
Confidence            34455666666553 344455555566656666665443 2222222   344555566666644 22212233444556


Q ss_pred             CCcEEeccCCCCCCCCCccCCCCCCCCEEEccC
Q 047285          306 SLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAW  338 (552)
Q Consensus       306 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~  338 (552)
                      +|+.+++..+ +.......+.+. +|+.+.+..
T Consensus        82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             TECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred             cccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence            6666666443 333333444444 555555543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.75  E-value=0.00031  Score=73.30  Aligned_cols=88  Identities=20%  Similarity=0.062  Sum_probs=50.1

Q ss_pred             CCCCccEEeccCcccccc--CchhhhcccCCcEEeccCC-CCCCCC----CccCCCCCCCCEEEccCcc-ceeecCcccc
Q 047285          279 GLRNLVFIDLSSNQFQGQ--IPIGLRNLTSLRHLDLRFN-YFNSTT----PGWLSKFNDLEFLSVAWNS-LQGTISSVGL  350 (552)
Q Consensus       279 ~l~~L~~L~L~~n~~~~~--~~~~l~~l~~L~~L~l~~n-~l~~~~----~~~l~~l~~L~~L~l~~n~-l~~~~~~~~l  350 (552)
                      .++.|+.+.+.++.-...  +-.....+++|+.|+++++ ......    ......+++|+.++++++. +++..-....
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            356677777776643322  2334556778888888763 111111    1223456788888888776 4432222212


Q ss_pred             CCCCccCEEeCCCCCC
Q 047285          351 ENLTSIETLDLSGNSK  366 (552)
Q Consensus       351 ~~l~~L~~L~l~~n~~  366 (552)
                      ..+++|+.|.+.+|..
T Consensus       266 ~~c~~L~~L~l~~c~~  281 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSN  281 (482)
T ss_pred             hhCCCcceEccCCCCc
Confidence            2377888888777763

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.68  E-value=6.2e-05  Score=68.34  Aligned_cols=99  Identities=20%  Similarity=0.182  Sum_probs=56.1

Q ss_pred             CCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccC-cccccCCCCCCeeeC
Q 047285          409 ALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFI-PLSLGKLSHLEYLDL  487 (552)
Q Consensus       409 ~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L  487 (552)
                      +.+.|+.-+|.++++  .....++.|+.|.|+-|+|+..  ..+..|++|++|.|..|.+...- -..+.++|+|+.|+|
T Consensus        20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence            455666666666532  1234566677777777766532  33556666777777766665211 123556666777777


Q ss_pred             CCcccceecCH----HhhhcCCCCCEEE
Q 047285          488 SNNKLNASLSE----IHFVNLTKLTWFS  511 (552)
Q Consensus       488 ~~n~l~~~~~~----~~~~~l~~L~~L~  511 (552)
                      ..|+-.|.-+.    ..+..+|+|+.||
T Consensus        96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   96 DENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             ccCCcccccchhHHHHHHHHcccchhcc
Confidence            66666555432    1344556666554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.67  E-value=0.001  Score=60.38  Aligned_cols=82  Identities=28%  Similarity=0.344  Sum_probs=41.2

Q ss_pred             CCCEEEccCCcCcccCchhhcCCCCCcEEECCCC--cccCCCcccccCCCCCCEEeCCCCcCCccCccc---ccCCCCCC
Q 047285          409 ALESLDLSICQISGHLTNQLLQFKSLHTLELGHN--SLFGPLPPALGELSSLKKLDLSNNMLNGFIPLS---LGKLSHLE  483 (552)
Q Consensus       409 ~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n--~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~L~  483 (552)
                      .|+.+.+.+..++..  ..+-.+++|++|.++.|  ++++.++.....+|+|+++++++|++..  +++   +..+.+|.
T Consensus        44 ~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~  119 (260)
T KOG2739|consen   44 ELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLK  119 (260)
T ss_pred             chhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchh
Confidence            455555555444321  12334556666666666  4444444444455666666666666542  222   23345555


Q ss_pred             eeeCCCcccce
Q 047285          484 YLDLSNNKLNA  494 (552)
Q Consensus       484 ~L~L~~n~l~~  494 (552)
                      .|++.+|..+.
T Consensus       120 ~Ldl~n~~~~~  130 (260)
T KOG2739|consen  120 SLDLFNCSVTN  130 (260)
T ss_pred             hhhcccCCccc
Confidence            66666655443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.83  E-value=0.0029  Score=34.07  Aligned_cols=21  Identities=33%  Similarity=0.442  Sum_probs=14.0

Q ss_pred             cccEEecCCCCCCCCCCccccc
Q 047285          530 QLETLQLRSCHLGPHFPSWLHS  551 (552)
Q Consensus       530 ~L~~L~l~~n~~~~~iP~~l~~  551 (552)
                      +|+.||+++|+++ .||++|++
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT
T ss_pred             CccEEECCCCcCE-eCChhhcC
Confidence            3667777777777 67766543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.07  E-value=0.0081  Score=32.32  Aligned_cols=19  Identities=42%  Similarity=0.789  Sum_probs=9.4

Q ss_pred             CCEEeCCCCcCCCCCccccC
Q 047285          153 LRYLNLSGAKFAGMIPLQLG  172 (552)
Q Consensus       153 L~~L~L~~~~~~~~lp~~l~  172 (552)
                      |++|++++|+++ .+|..|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            455555555555 4444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.05  E-value=0.065  Score=26.67  Aligned_cols=10  Identities=50%  Similarity=0.541  Sum_probs=3.4

Q ss_pred             CCEEeccCCC
Q 047285          177 LQYLDLSGTF  186 (552)
Q Consensus       177 L~~L~l~~n~  186 (552)
                      |++|++++|.
T Consensus         3 L~~L~l~~n~   12 (17)
T PF13504_consen    3 LRTLDLSNNR   12 (17)
T ss_dssp             -SEEEETSS-
T ss_pred             cCEEECCCCC
Confidence            4444444443

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.77  E-value=0.025  Score=49.46  Aligned_cols=81  Identities=19%  Similarity=0.144  Sum_probs=43.5

Q ss_pred             CcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccC-CCCccCEEeCCCCCCCCCCCchhHhhcccCceee
Q 047285          307 LRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLE-NLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVD  385 (552)
Q Consensus       307 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~-~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~  385 (552)
                      ++.+|.++..+.....+.+.+++.++.|.+.+|.-.+..--..++ -.++|+.|++++|+.++......+..+++|+.+.
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~  182 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH  182 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence            334444444443333333444444444444444322111111111 3478888888888888877777788887666665


Q ss_pred             cc
Q 047285          386 LS  387 (552)
Q Consensus       386 l~  387 (552)
                      +.
T Consensus       183 l~  184 (221)
T KOG3864|consen  183 LY  184 (221)
T ss_pred             hc
Confidence            55

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=91.10  E-value=0.0018  Score=66.20  Aligned_cols=188  Identities=31%  Similarity=0.304  Sum_probs=90.7

Q ss_pred             CCCEEEccCccceeecCc---cccCCCCccCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccC
Q 047285          330 DLEFLSVAWNSLQGTISS---VGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCG  406 (552)
Q Consensus       330 ~L~~L~l~~n~l~~~~~~---~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~  406 (552)
                      .+..+.+.+|.+......   ..+...+.|+.|++++|. +.+.....++..-  +..                      
T Consensus        88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~-l~~~g~~~l~~~l--~~~----------------------  142 (478)
T KOG4308|consen   88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNN-LGDEGARLLCEGL--RLP----------------------  142 (478)
T ss_pred             hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCC-CccHhHHHHHhhc--ccc----------------------
Confidence            477888888887643221   235667889999999998 5533333332211  000                      


Q ss_pred             CCCCCEEEccCCcCccc----CchhhcCCCCCcEEECCCCcccC----CCccccc----CCCCCCEEeCCCCcCCcc---
Q 047285          407 AYALESLDLSICQISGH----LTNQLLQFKSLHTLELGHNSLFG----PLPPALG----ELSSLKKLDLSNNMLNGF---  471 (552)
Q Consensus       407 ~~~L~~L~ls~n~~~~~----~~~~l~~l~~L~~L~L~~n~l~~----~~~~~l~----~l~~L~~L~L~~n~l~~~---  471 (552)
                      -..+++|++..|.++..    +.+.+.....++.++++.|.+..    .++..+.    ...++++|++++|.++..   
T Consensus       143 ~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~  222 (478)
T KOG4308|consen  143 QCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCA  222 (478)
T ss_pred             hHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHH
Confidence            01344444444544432    23334445555555555555421    1112222    344566666666655421   


Q ss_pred             -CcccccCCCC-CCeeeCCCcccceecCHH---hhhcC-CCCCEEEccCCeeeEEcC----CCCcCcccccEEecCCCCC
Q 047285          472 -IPLSLGKLSH-LEYLDLSNNKLNASLSEI---HFVNL-TKLTWFSASGNSLILKFN----PNWVPPFQLETLQLRSCHL  541 (552)
Q Consensus       472 -~~~~~~~l~~-L~~L~L~~n~l~~~~~~~---~~~~l-~~L~~L~L~~n~~~~~~~----~~~~~~~~L~~L~l~~n~~  541 (552)
                       +...+...++ +..+++..|.+.+.....   .+... ..+++++++.|.+...-.    ..+..+.+++.+.+++|++
T Consensus       223 ~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l  302 (478)
T KOG4308|consen  223 LLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPL  302 (478)
T ss_pred             HHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcc
Confidence             1112233333 445666666554321110   22233 444566666666654322    2333445566666666654


Q ss_pred             C
Q 047285          542 G  542 (552)
Q Consensus       542 ~  542 (552)
                      .
T Consensus       303 ~  303 (478)
T KOG4308|consen  303 T  303 (478)
T ss_pred             c
Confidence            4

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.07  E-value=0.041  Score=48.21  Aligned_cols=82  Identities=28%  Similarity=0.264  Sum_probs=52.2

Q ss_pred             CCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCC-ccccc-CCCCCCEEeCCCCc-CCccCcccccCCCCCCee
Q 047285          409 ALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPL-PPALG-ELSSLKKLDLSNNM-LNGFIPLSLGKLSHLEYL  485 (552)
Q Consensus       409 ~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~-~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L  485 (552)
                      .++.+|-+++.|..+-.+.+..++.++.|.+.+|.-.+.. -+.++ -.++|+.|++++|+ |++.--..+..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            5778888888887777777778888888888887644321 01111 24577777777765 454444455666667666


Q ss_pred             eCCCc
Q 047285          486 DLSNN  490 (552)
Q Consensus       486 ~L~~n  490 (552)
                      .|.+=
T Consensus       182 ~l~~l  186 (221)
T KOG3864|consen  182 HLYDL  186 (221)
T ss_pred             HhcCc
Confidence            66543

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=89.16  E-value=0.0054  Score=62.81  Aligned_cols=92  Identities=27%  Similarity=0.270  Sum_probs=51.4

Q ss_pred             CCCCCCEEEcCCCCCCCCC----CCcccCCCC-CceeecCCCCCCCCCc-cccccccCC-CCccEEeccCccccccCc--
Q 047285          228 SLPSLKVLKLTKCQLCHFP----PLLSANFSS-LKALHLAINNFDNSLF-QYGSWVFGL-RNLVFIDLSSNQFQGQIP--  298 (552)
Q Consensus       228 ~~~~L~~L~l~~n~~~~~~----~~~~~~l~~-L~~L~l~~n~~~~~~~-~~~~~~~~l-~~L~~L~L~~n~~~~~~~--  298 (552)
                      ...++++|++.+|.++...    ...+...+. ++.+++..|.+.+... .....+..+ ..+++++++.|.++..-.  
T Consensus       202 ~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~  281 (478)
T KOG4308|consen  202 PLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRD  281 (478)
T ss_pred             ccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHH
Confidence            3556666777666655211    122333344 5667777777665411 111123333 567888888887765433  


Q ss_pred             --hhhhcccCCcEEeccCCCCCC
Q 047285          299 --IGLRNLTSLRHLDLRFNYFNS  319 (552)
Q Consensus       299 --~~l~~l~~L~~L~l~~n~l~~  319 (552)
                        ..+..+++++++.++.|.+..
T Consensus       282 L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  282 LAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             HHHHHhhhHHHHHhhcccCcccc
Confidence              334456677777777776653

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=85.92  E-value=0.013  Score=52.32  Aligned_cols=88  Identities=19%  Similarity=0.155  Sum_probs=50.2

Q ss_pred             CCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCee
Q 047285          406 GAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYL  485 (552)
Q Consensus       406 ~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  485 (552)
                      .+...+.||++.|++- ..-..+..++.|..|+++.|++. -.|..++....++.+++..|..+ ..|..+...|.++++
T Consensus        40 ~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~  116 (326)
T KOG0473|consen   40 SFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN  116 (326)
T ss_pred             ccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence            3345566666666543 12223444455666666666654 55666666666666666666655 456666666666666


Q ss_pred             eCCCcccceec
Q 047285          486 DLSNNKLNASL  496 (552)
Q Consensus       486 ~L~~n~l~~~~  496 (552)
                      ++.+|.++..+
T Consensus       117 e~k~~~~~~~~  127 (326)
T KOG0473|consen  117 EQKKTEFFRKL  127 (326)
T ss_pred             hhccCcchHHH
Confidence            66666654433

>smart00370 LRR Leucine-rich repeats, outliers

Probab=85.87  E-value=0.77  Score=25.59  Aligned_cols=17  Identities=47%  Similarity=0.522  Sum_probs=10.0

Q ss_pred             CCCCEEeccCCCCCCCc
Q 047285          175 SNLQYLDLSGTFLSNYD  191 (552)
Q Consensus       175 ~~L~~L~l~~n~l~~~~  191 (552)
                      ++|++|++++|.+..+|
T Consensus         2 ~~L~~L~L~~N~l~~lp   18 (26)
T smart00370        2 PNLRELDLSNNQLSSLP   18 (26)
T ss_pred             CCCCEEECCCCcCCcCC
Confidence            45666666666555554

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=85.87  E-value=0.77  Score=25.59  Aligned_cols=17  Identities=47%  Similarity=0.522  Sum_probs=10.0

Q ss_pred             CCCCEEeccCCCCCCCc
Q 047285          175 SNLQYLDLSGTFLSNYD  191 (552)
Q Consensus       175 ~~L~~L~l~~n~l~~~~  191 (552)
                      ++|++|++++|.+..+|
T Consensus         2 ~~L~~L~L~~N~l~~lp   18 (26)
T smart00369        2 PNLRELDLSNNQLSSLP   18 (26)
T ss_pred             CCCCEEECCCCcCCcCC
Confidence            45666666666555554

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=84.75  E-value=0.017  Score=51.57  Aligned_cols=87  Identities=16%  Similarity=0.132  Sum_probs=61.4

Q ss_pred             cccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCcccc
Q 047285          121 SLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWL  200 (552)
Q Consensus       121 ~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l  200 (552)
                      .+..++..+.||++.|.+.  .+-..|+-++.|..|+++.|.+. .+|..++.+..++++++..|.....|..      +
T Consensus        37 ei~~~kr~tvld~~s~r~v--n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~~p~s------~  107 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLV--NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQQPKS------Q  107 (326)
T ss_pred             hhhccceeeeehhhhhHHH--hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhhCCcc------c
Confidence            4667788888888888776  45566677778888888888776 6788888888888888887766655543      4


Q ss_pred             CCCCCCCEEeCCCCcC
Q 047285          201 SGLYMLEHLDLSQMNL  216 (552)
Q Consensus       201 ~~l~~L~~L~ls~n~~  216 (552)
                      ...+.++++++-.+.+
T Consensus       108 ~k~~~~k~~e~k~~~~  123 (326)
T KOG0473|consen  108 KKEPHPKKNEQKKTEF  123 (326)
T ss_pred             cccCCcchhhhccCcc
Confidence            4455555555555543

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=83.68  E-value=0.97  Score=25.17  Aligned_cols=20  Identities=40%  Similarity=0.675  Sum_probs=10.1

Q ss_pred             CCCCEEEcCCCCCCCCCCCc
Q 047285          230 PSLKVLKLTKCQLCHFPPLL  249 (552)
Q Consensus       230 ~~L~~L~l~~n~~~~~~~~~  249 (552)
                      ++|++|++++|.+...++..
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHH
Confidence            34555555555555544433

>smart00370 LRR Leucine-rich repeats, outliers

Probab=83.68  E-value=0.97  Score=25.17  Aligned_cols=20  Identities=40%  Similarity=0.675  Sum_probs=10.1

Q ss_pred             CCCCEEEcCCCCCCCCCCCc
Q 047285          230 PSLKVLKLTKCQLCHFPPLL  249 (552)
Q Consensus       230 ~~L~~L~l~~n~~~~~~~~~  249 (552)
                      ++|++|++++|.+...++..
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHH
Confidence            34555555555555544433

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=82.40  E-value=0.36  Score=26.37  Aligned_cols=16  Identities=50%  Similarity=0.488  Sum_probs=7.5

Q ss_pred             CCCEEEccCCcCcccC
Q 047285          409 ALESLDLSICQISGHL  424 (552)
Q Consensus       409 ~L~~L~ls~n~~~~~~  424 (552)
                      +|++|++++|.+++..
T Consensus         3 ~L~~L~l~~n~i~~~g   18 (24)
T PF13516_consen    3 NLETLDLSNNQITDEG   18 (24)
T ss_dssp             T-SEEE-TSSBEHHHH
T ss_pred             CCCEEEccCCcCCHHH
Confidence            4555556555555433

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	552
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		6e-14
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		6e-14
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-09
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		8e-06
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		1e-06
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		7e-04
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		1e-06
4g8a_A	635	Crystal Structure Of Human Tlr4 Polymorphic Variant		3e-06
3t6q_A	606	Crystal Structure Of Mouse Rp105MD-1 Complex Length		4e-06
3rg1_A	612	Crystal Structure Of The Rp105MD-1 Complex Length =		2e-05
2z66_A	306	Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 A		3e-05
3vq1_A	606	Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLE		5e-05
2z64_A	599	Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Comp		5e-05
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		8e-05
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		1e-04
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		3e-04
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		3e-04
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		4e-04
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		4e-04
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		4e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 75.9 bits (185), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 119/441 (26%), Positives = 183/441 (41%), Gaps = 55/441 (12%)
Query: 116 GKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGS--LENLRYLNLSGAKFAGMIPLQLGN 173
           GKV+  L  L  L  LDLS N   G  +  ++ S     L++L +SG K +G +   +  
Sbjct: 139 GKVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSR 195
Query: 174 LSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLK 233
             NL++LD+S    S        + +L     L+HLD+S   LS   D+    ++   LK
Sbjct: 196 CVNLEFLDVSSNNFST------GIPFLGDCSALQHLDISGNKLS--GDFSRAISTCTELK 247
Query: 234 VLKLTKCQLC-HFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQ 292
           +L ++  Q     PPL                               L++L ++ L+ N+
Sbjct: 248 LLNISSNQFVGPIPPL------------------------------PLKSLQYLSLAENK 277
Query: 293 FQGQIPIGLRNLT-SLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLE 351
           F G+IP  L     +L  LDL  N+F    P +    + LE L+++ N+  G +    L 
Sbjct: 278 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL 337
Query: 352 NLTSIETLDLSGNSKLGGKIPTSFARL-CKLTSVDLSLIDLSQDFS-QVLDTFSSCGAYA 409
            +  ++ LDLS N +  G++P S   L   L ++DLS    S +FS  +L          
Sbjct: 338 KMRGLKVLDLSFN-EFSGELPESLTNLSASLLTLDLS----SNNFSGPILPNLCQNPKNT 392
Query: 410 LESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGEXXXXXXXXXXXXXXX 469
           L+ L L     +G +   L     L +L L  N L G +P +LG                
Sbjct: 393 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 452
Query: 470 GFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPF 529
           G IP  L  +  LE L L  N L   +      N T L W S S N L  +  P W+   
Sbjct: 453 GEIPQELMYVKTLETLILDFNDLTGEIPS-GLSNCTNLNWISLSNNRLTGEI-PKWIGRL 510
Query: 530 Q-LETLQLRSCHLGPHFPSWL 549
           + L  L+L +     + P+ L
Sbjct: 511 ENLAILKLSNNSFSGNIPAEL 531

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 75.9 bits (185), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 119/441 (26%), Positives = 183/441 (41%), Gaps = 55/441 (12%)
Query: 116 GKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGS--LENLRYLNLSGAKFAGMIPLQLGN 173
           GKV+  L  L  L  LDLS N   G  +  ++ S     L++L +SG K +G +   +  
Sbjct: 142 GKVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSR 198
Query: 174 LSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLK 233
             NL++LD+S    S        + +L     L+HLD+S   LS   D+    ++   LK
Sbjct: 199 CVNLEFLDVSSNNFST------GIPFLGDCSALQHLDISGNKLS--GDFSRAISTCTELK 250
Query: 234 VLKLTKCQLC-HFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQ 292
           +L ++  Q     PPL                               L++L ++ L+ N+
Sbjct: 251 LLNISSNQFVGPIPPL------------------------------PLKSLQYLSLAENK 280
Query: 293 FQGQIPIGLRNLT-SLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLE 351
           F G+IP  L     +L  LDL  N+F    P +    + LE L+++ N+  G +    L 
Sbjct: 281 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL 340
Query: 352 NLTSIETLDLSGNSKLGGKIPTSFARL-CKLTSVDLSLIDLSQDFS-QVLDTFSSCGAYA 409
            +  ++ LDLS N +  G++P S   L   L ++DLS    S +FS  +L          
Sbjct: 341 KMRGLKVLDLSFN-EFSGELPESLTNLSASLLTLDLS----SNNFSGPILPNLCQNPKNT 395
Query: 410 LESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGEXXXXXXXXXXXXXXX 469
           L+ L L     +G +   L     L +L L  N L G +P +LG                
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455
Query: 470 GFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPF 529
           G IP  L  +  LE L L  N L   +      N T L W S S N L  +  P W+   
Sbjct: 456 GEIPQELMYVKTLETLILDFNDLTGEIPS-GLSNCTNLNWISLSNNRLTGEI-PKWIGRL 513
Query: 530 Q-LETLQLRSCHLGPHFPSWL 549
           + L  L+L +     + P+ L
Sbjct: 514 ENLAILKLSNNSFSGNIPAEL 534

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 81/324 (25%), Positives = 138/324 (42%), Gaps = 63/324 (19%)
Query: 37  CIDSEREALLKLKQDLIDPSNRLASWNTGDGDCCK--WAGVFCSNITG-------HVLQL 87
           C   +++ALL++K+DL +P+  L+SW     DCC   W GV C   T         +  L
Sbjct: 3   CNPQDKQALLQIKKDLGNPTT-LSSW-LPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL 60
Query: 88  SLQNPFS--------------YLGGDLREVKAGSNYERSKLGGKVNPSLVDLKHLIHLDL 133
           +L  P+               Y+GG             + L G + P++  L  L +L +
Sbjct: 61  NLPKPYPIPSSLANLPYLNFLYIGG------------INNLVGPIPPAIAKLTQLHYLYI 108
Query: 134 SGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLH 193
           +  +  G  IP +L  ++ L  L+ S    +G +P  + +L NL  +   G  +S     
Sbjct: 109 THTNVSG-AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA--I 165
Query: 194 VDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLP------SLKVLKLTKCQLCHFPP 247
            DS    S L+       + M +S+      +T  +P      +L  + L++  L     
Sbjct: 166 PDSYGSFSKLF-------TSMTISRNR----LTGKIPPTFANLNLAFVDLSRNMLEGDAS 214
Query: 248 LLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSL 307
           +L  +  + + +HLA N+    L + G      +NL  +DL +N+  G +P GL  L  L
Sbjct: 215 VLFGSDKNTQKIHLAKNSLAFDLGKVGLS----KNLNGLDLRNNRIYGTLPQGLTQLKFL 270
Query: 308 RHLDLRFNYFNSTTP--GWLSKFN 329
             L++ FN      P  G L +F+
Sbjct: 271 HSLNVSFNNLCGEIPQGGNLQRFD 294

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 88/216 (40%), Gaps = 54/216 (25%)
Query: 276 WVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLS 335
           ++ G+ NLV          G IP  +  LT L +L +     +   P +LS+   L  L 
Sbjct: 82  YIGGINNLV----------GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD 131
Query: 336 VAWNSLQGTI--SSVGLENLTSIETLD---LSG-------------------NSKLGGKI 371
            ++N+L GT+  S   L NL  I T D   +SG                    ++L GKI
Sbjct: 132 FSYNALSGTLPPSISSLPNLVGI-TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI 190
Query: 372 PTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCG------------------AYALESL 413
           P +FA L  L  VDLS   L  D S +  +  +                    +  L  L
Sbjct: 191 PPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGL 249
Query: 414 DLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLP 449
           DL   +I G L   L Q K LH+L +  N+L G +P
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 89/205 (43%), Gaps = 28/205 (13%)
Query: 135 GNDFEGIQIPKYLGSLENLRYLNLS--GAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDL 192
           GN F  + +P       +L +L+LS  G  F G         ++L+YLDLS      ++ 
Sbjct: 338 GNAFSEVDLP-------SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS------FNG 384
Query: 193 HVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSAN 252
            +   S   GL  LEHLD    NL + S++ +       L +  L    + H    ++ N
Sbjct: 385 VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF------LSLRNLIYLDISHTHTRVAFN 438
Query: 253 -----FSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSL 307
                 SSL+ L +A N+F  +          LRNL F+DLS  Q +   P    +L+SL
Sbjct: 439 GIFNGLSSLEVLKMAGNSFQENFLP--DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496
Query: 308 RHLDLRFNYFNSTTPGWLSKFNDLE 332
           + L++  N   S   G   +   L+
Sbjct: 497 QVLNMASNQLKSVPDGIFDRLTSLQ 521

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 72/283 (25%), Positives = 118/283 (41%), Gaps = 47/283 (16%)
Query: 158 LSGAKFAGMIPLQLGNLSNLQYLDLSG-TFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNL 216
           L+G +   ++  +  N  NL+  D S    L N  +    L++L   Y+ + +DL    L
Sbjct: 224 LAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD-YYLDDIIDLFNC-L 281
Query: 217 SKASDWLLVTNSLPSLKV---------LKLTKCQLCHFPPLLSANFSSLKALHLAINNFD 267
           +  S + LV+ ++  +K          L+L  C+   FP L      SLK L    N   
Sbjct: 282 TNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGG 338
Query: 268 NSLFQYGSWVFGLRNLVFIDLSSN--QFQGQIPIGLRNLTSLRHLDLRFN---------- 315
           N+  +       L +L F+DLS N   F+G         TSL++LDL FN          
Sbjct: 339 NAFSEVD-----LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL 393
Query: 316 --------YFNSTTPGWLSKFN------DLEFLSVAWNSLQGTISSVGLENLTSIETLDL 361
                    F  +    +S+F+      +L +L ++    +   + +    L+S+E L +
Sbjct: 394 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI-FNGLSSLEVLKM 452
Query: 362 SGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSS 404
           +GNS     +P  F  L  LT +DLS   L Q      ++ SS
Sbjct: 453 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 495

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 100/235 (42%), Gaps = 36/235 (15%)
Query: 135 GNDFEGIQIPKYLGSLENLRYLNLS--GAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDL 192
           GN F  + +P       +L +L+LS  G  F G         ++L+YLDLS      ++ 
Sbjct: 338 GNAFSEVDLP-------SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS------FNG 384
Query: 193 HVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSAN 252
            +   S   GL  LEHLD    NL + S++ +       L +  L    + H    ++ N
Sbjct: 385 VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF------LSLRNLIYLDISHTHTRVAFN 438
Query: 253 -----FSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSL 307
                 SSL+ L +A N+F  +          LRNL F+DLS  Q +   P    +L+SL
Sbjct: 439 GIFNGLSSLEVLKMAGNSFQENFL--PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496
Query: 308 RHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWN--------SLQGTISSVGLENLT 354
           + L++  N F S         N L+ L  + N         LQ   SS+   NLT
Sbjct: 497 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 551

>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 99/235 (42%), Gaps = 36/235 (15%)
Query: 135 GNDFEGIQIPKYLGSLENLRYLNLS--GAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDL 192
           GN F  + +P       +L +L+LS  G  F G          +L+YLDLS      ++ 
Sbjct: 362 GNAFSEVDLP-------SLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLS------FNG 408
Query: 193 HVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSAN 252
            +   S   GL  LEHLD    NL + S++ +       L +  L    + H    ++ N
Sbjct: 409 VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF------LSLRNLIYLDISHTHTRVAFN 462
Query: 253 -----FSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSL 307
                 SSL+ L +A N+F  +          LRNL F+DLS  Q +   P    +L+SL
Sbjct: 463 GIFNGLSSLEVLKMAGNSFQENFL--PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 520
Query: 308 RHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWN--------SLQGTISSVGLENLT 354
           + L++  N F S         N L+ L  + N         LQ   SS+   NLT
Sbjct: 521 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 575

>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex Length = 606

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 90/374 (24%), Positives = 161/374 (43%), Gaps = 27/374 (7%)
Query: 146 YLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYM 205
           +LG+ E++   ++S A F G+  +      +++ ++L   +   +++  ++    SGL  
Sbjct: 231 WLGTFEDMDDEDISPAVFEGLCEM------SVESINLQKHYF--FNISSNTFHCFSGL-- 280
Query: 206 LEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINN 265
            + LDL+  +LS+    L+    L +LK L L+  +  +   + ++NF SL   HL+I  
Sbjct: 281 -QELDLTATHLSELPSGLV---GLSTLKKLVLSANKFENLCQISASNFPSLT--HLSIKG 334
Query: 266 FDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQ--IPIGLRNLTSLRHLDLRFNYFNSTTPG 323
               L      +  L NL  +DLS +  +      + LRNL+ L+ L+L +N   S    
Sbjct: 335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTE 394
Query: 324 WLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTS 383
              +   LE L +A+  L+   +    +NL  ++ L+LS +S L       F  L  L  
Sbjct: 395 AFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLS-HSLLDISSEQLFDGLPALQH 453
Query: 384 VDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNS 443
           ++L      +   Q  ++  + G   LE L LS C +S    +     K ++ ++L HN 
Sbjct: 454 LNLQGNHFPKGNIQKTNSLQTLGR--LEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR 511
Query: 444 LFGPLPPALGEXXXXXXXXXXXXXXXGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVN 503
           L      AL                   +P  L  LS    ++L  N L+ + S I+F  
Sbjct: 512 LTSSSIEALSHLKGIYLNLASNHISI-ILPSLLPILSQQRTINLRQNPLDCTCSNIYF-- 568
Query: 504 LTKLTWFSASGNSL 517
              L W+  +   L
Sbjct: 569 ---LEWYKENMQKL 579

>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex Length = 612

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 115/445 (25%), Positives = 177/445 (39%), Gaps = 49/445 (11%)
Query: 131 LDLSGNDFEGIQ----IPKYLGSLENLRYLNL----SGAKFAGMIPLQLGNLSNL--QYL 180
           L+ +GND +GI+    I K   SL+    LNL     G + + +  L LG   +   QYL
Sbjct: 183 LNFNGNDIKGIEPGAFISKIFQSLKFGGSLNLFIIFKGLQNSTLQSLWLGTFEDTDDQYL 242
Query: 181 DLSGTFLSNYDLHVDSL------------SWLSGLYMLEHLDLSQMNLSKASDWLLVTNS 228
             S TF    D+ V+S+            S       ++ LDL+  +L+     +   NS
Sbjct: 243 T-SATFEGLCDMSVESINLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNGLPSGIEGMNS 301
Query: 229 LPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVF-GLRNLVFID 287
           L  L +   +  QLC      +A+F SL+ L++  N         G+     L NL  +D
Sbjct: 302 LKKLVLNANSFDQLCQIN---AASFPSLRDLYIKGNMRK---LDLGTRCLEKLENLQKLD 355
Query: 288 LSSNQFQGQ--IPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTI 345
           LS +  +      + L+NL  L++L+L +N           +   LE L VA+  L    
Sbjct: 356 LSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKA 415
Query: 346 SSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDL---SLIDLSQDFSQVLDTF 402
                +NL  +  L+LS +  L        A L  L  ++L   S  D S   + +L   
Sbjct: 416 PHSPFQNLHLLRVLNLS-HCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMV 474
Query: 403 SSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGEXXXXXXXX 462
            S     LE L LS C +           ++++ L+L HNSL G    AL          
Sbjct: 475 GS-----LEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGLYLNM 529
Query: 463 XXXXXXXGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFN 522
                     P  L  LS    ++LS+N L+ + S IHF+     TW+  + + L     
Sbjct: 530 ASNNIRI-IPPHLLPALSQQSIINLSHNPLDCTCSNIHFI-----TWYKENLHKLEDSEE 583
Query: 523 PNWVPPFQLETLQLRSC--HLGPHF 545
                P  L  ++L     H G H 
Sbjct: 584 TTCANPPSLRGVKLSDVKLHCGTHM 608

>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 306

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 93/220 (42%), Gaps = 29/220 (13%)
Query: 150 LENLRYLNLS--GAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLE 207
           L  L  L+LS  G  F G         ++L+YLDLS      ++  +   S   GL  LE
Sbjct: 51  LTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS------FNGVITMSSNFLGLEQLE 104
Query: 208 HLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSAN-----FSSLKALHLA 262
           HLD    NL + S++ +       L +  L    + H    ++ N      SSL+ L +A
Sbjct: 105 HLDFQHSNLKQMSEFSVF------LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 158
Query: 263 INNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTP 322
            N+F  +          LRNL F+DLS  Q +   P    +L+SL+ L++  N F S   
Sbjct: 159 GNSFQENFL--PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT 216
Query: 323 GWLSKFNDLEFLSVAWN--------SLQGTISSVGLENLT 354
                 N L+ L  + N         LQ   SS+   NLT
Sbjct: 217 FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 256

>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX Length = 606

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 83/196 (42%), Gaps = 41/196 (20%)
Query: 235 LKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVF---GLRNLVFIDLSSN 291
           L + +CQL  FP L   +   LK+L L +N         GS  F    L +L ++DLS N
Sbjct: 312 LSIIRCQLKQFPTL---DLPFLKSLTLTMNK--------GSISFKKVALPSLSYLDLSRN 360
Query: 292 --QFQGQIPIGLRNLTSLRHLDLRFN------------------YFNSTTPGWLSKFN-- 329
              F G          SLRHLDL FN                   F  +T   +++F+  
Sbjct: 361 ALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAF 420
Query: 330 ----DLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVD 385
                L +L +++ + +     + L  LTS+ TL ++GNS     +   FA    LT +D
Sbjct: 421 LSLEKLLYLDISYTNTKIDFDGIFL-GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLD 479
Query: 386 LSLIDLSQDFSQVLDT 401
           LS   L Q    V DT
Sbjct: 480 LSKCQLEQISWGVFDT 495

>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex Length = 599

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 83/196 (42%), Gaps = 41/196 (20%)
Query: 235 LKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVF---GLRNLVFIDLSSN 291
           L + +CQL  FP L   +   LK+L L +N         GS  F    L +L ++DLS N
Sbjct: 307 LSIIRCQLKQFPTL---DLPFLKSLTLTMNK--------GSISFKKVALPSLSYLDLSRN 355
Query: 292 --QFQGQIPIGLRNLTSLRHLDLRFN------------------YFNSTTPGWLSKFN-- 329
              F G          SLRHLDL FN                   F  +T   +++F+  
Sbjct: 356 ALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAF 415
Query: 330 ----DLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVD 385
                L +L +++ + +     + L  LTS+ TL ++GNS     +   FA    LT +D
Sbjct: 416 LSLEKLLYLDISYTNTKIDFDGIFL-GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLD 474
Query: 386 LSLIDLSQDFSQVLDT 401
           LS   L Q    V DT
Sbjct: 475 LSKCQLEQISWGVFDT 490

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 106/247 (42%), Gaps = 34/247 (13%)
Query: 122 LVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLD 181
           L +L  L+ + ++ N    I     L +L NL  L L   +   + PL+  NL+NL  L+
Sbjct: 81  LKNLTKLVDILMNNNQIADI---TPLANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLE 135
Query: 182 LSGTFLS--------------NYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTN 227
           LS   +S              N+   V  L  L+ L  LE LD+S    +K SD + V  
Sbjct: 136 LSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISS---NKVSD-ISVLA 191
Query: 228 SLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFID 287
            L +L+ L  T  Q+    PL     ++L  L L      N L   G+    L NL  +D
Sbjct: 192 KLTNLESLIATNNQISDITPL--GILTNLDELSLN----GNQLKDIGTLA-SLTNLTDLD 244
Query: 288 LSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISS 347
           L++NQ     P  L  LT L  L L  N  ++ +P  L+    L  L +  N L+     
Sbjct: 245 LANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPI 300
Query: 348 VGLENLT 354
             L+NLT
Sbjct: 301 SNLKNLT 307

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 106/247 (42%), Gaps = 34/247 (13%)
Query: 122 LVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLD 181
           L +L  L+ + ++ N    I     L +L NL  L L   +   + PL+  NL+NL  L+
Sbjct: 81  LKNLTKLVDILMNNNQIADI---TPLANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLE 135
Query: 182 LSGTFLS--------------NYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTN 227
           LS   +S              N+   V  L  L+ L  LE LD+S    +K SD + V  
Sbjct: 136 LSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISS---NKVSD-ISVLA 191
Query: 228 SLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFID 287
            L +L+ L  T  Q+    PL     ++L  L L      N L   G+    L NL  +D
Sbjct: 192 KLTNLESLIATNNQISDITPL--GILTNLDELSLN----GNQLKDIGTLA-SLTNLTDLD 244
Query: 288 LSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISS 347
           L++NQ     P  L  LT L  L L  N  ++ +P  L+    L  L +  N L+     
Sbjct: 245 LANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPI 300
Query: 348 VGLENLT 354
             L+NLT
Sbjct: 301 SNLKNLT 307

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 104/247 (42%), Gaps = 34/247 (13%)
Query: 122 LVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLD 181
           L +L  L+ + ++ N    I     L +L NL  L L   +   + PL+  NL+NL  L+
Sbjct: 85  LKNLTKLVDILMNNNQIADI---TPLANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLE 139
Query: 182 LSGTFLSN--------------YDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTN 227
           LS   +S+              +   V  L  L+ L  LE LD+S   +S  S    +TN
Sbjct: 140 LSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTN 199
Query: 228 SLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFID 287
               L+ L  T  Q+    PL     ++L  L L      N L   G+    L NL  +D
Sbjct: 200 ----LESLIATNNQISDITPL--GILTNLDELSLN----GNQLKDIGTLA-SLTNLTDLD 248
Query: 288 LSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISS 347
           L++NQ     P  L  LT L  L L  N  ++ +P  L+    L  L +  N L+     
Sbjct: 249 LANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPI 304
Query: 348 VGLENLT 354
             L+NLT
Sbjct: 305 SNLKNLT 311

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 104/247 (42%), Gaps = 34/247 (13%)
Query: 122 LVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLD 181
           L +L  L+ + ++ N    I     L +L NL  L L   +   + PL+  NL+NL  L+
Sbjct: 86  LKNLTKLVDILMNNNQIADI---TPLANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLE 140
Query: 182 LSGTFLSN--------------YDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTN 227
           LS   +S+              +   V  L  L+ L  LE LD+S   +S  S    +TN
Sbjct: 141 LSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTN 200
Query: 228 SLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFID 287
               L+ L  T  Q+    PL     ++L  L L      N L   G+    L NL  +D
Sbjct: 201 ----LESLIATNNQISDITPL--GILTNLDELSLN----GNQLKDIGTLA-SLTNLTDLD 249
Query: 288 LSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISS 347
           L++NQ     P  L  LT L  L L  N  ++ +P  L+    L  L +  N L+     
Sbjct: 250 LANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPI 305
Query: 348 VGLENLT 354
             L+NLT
Sbjct: 306 SNLKNLT 312

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 103/248 (41%), Gaps = 35/248 (14%)
Query: 122 LVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLD 181
           L +L  L+ + ++ N    I     L +L NL  L L   +   + PL+  NL+NL  L+
Sbjct: 81  LKNLTKLVDILMNNNQIADI---TPLANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLE 135
Query: 182 LSGTFLSNYDL---------------HVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVT 226
           LS   +S+                   V  L  L+ L  LE LD+S   +S  S    +T
Sbjct: 136 LSSNTISDISALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLT 195
Query: 227 NSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFI 286
           N    L+ L  T  Q+    PL     ++L  L L      N L   G+    L NL  +
Sbjct: 196 N----LESLIATNNQISDITPL--GILTNLDELSLN----GNQLKDIGTLA-SLTNLTDL 244
Query: 287 DLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTIS 346
           DL++NQ     P  L  LT L  L L  N  ++ +P  L+    L  L +  N L+    
Sbjct: 245 DLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP 300
Query: 347 SVGLENLT 354
              L+NLT
Sbjct: 301 ISNLKNLT 308

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 103/248 (41%), Gaps = 35/248 (14%)
Query: 122 LVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLD 181
           L +L  L+ + ++ N    I     L +L NL  L L   +   + PL+  NL+NL  L+
Sbjct: 81  LKNLTKLVDILMNNNQIADI---TPLANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLE 135
Query: 182 LSGTFLSNYDL---------------HVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVT 226
           LS   +S+                   V  L  L+ L  LE LD+S   +S  S    +T
Sbjct: 136 LSSNTISDISALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLT 195
Query: 227 NSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFI 286
           N    L+ L  T  Q+    PL     ++L  L L      N L   G+    L NL  +
Sbjct: 196 N----LESLIATNNQISDITPL--GILTNLDELSLN----GNQLKDIGTLA-SLTNLTDL 244
Query: 287 DLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTIS 346
           DL++NQ     P  L  LT L  L L  N  ++ +P  L+    L  L +  N L+    
Sbjct: 245 DLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP 300
Query: 347 SVGLENLT 354
              L+NLT
Sbjct: 301 ISNLKNLT 308

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 105/248 (42%), Gaps = 35/248 (14%)
Query: 122 LVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLD 181
           L +L  L+ + ++ N    I     L +L NL  L L   +   + PL+  NL+NL  L+
Sbjct: 81  LKNLTKLVDILMNNNQIADI---TPLANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLE 135
Query: 182 LSGTFLSNYDL---------------HVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVT 226
           LS   +S+                   V  L  L+ L  LE LD+S    +K SD + V 
Sbjct: 136 LSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISS---NKVSD-ISVL 191
Query: 227 NSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFI 286
             L +L+ L  T  Q+    PL     ++L  L L      N L   G+    L NL  +
Sbjct: 192 AKLTNLESLIATNNQISDITPL--GILTNLDELSLN----GNQLKDIGTLA-SLTNLTDL 244
Query: 287 DLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTIS 346
           DL++NQ     P  L  LT L  L L  N  ++ +P  L+    L  L +  N L+    
Sbjct: 245 DLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP 300
Query: 347 SVGLENLT 354
              L+NLT
Sbjct: 301 ISNLKNLT 308

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	552
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-92
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-64
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-63
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-59
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-56
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-41
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-37
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-55
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-52
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-49
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-48
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-41
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-38
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-48
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-45
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-42
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-41
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-39
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-48
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-44
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-43
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-22
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-47
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-45
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-44
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-41
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-31
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-25
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-45
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-44
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-39
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-37
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-42
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-42
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-39
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-36
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-35
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-07
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-42
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-39
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-37
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-10
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-39
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-36
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-35
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-34
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-31
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-38
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-33
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-32
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-38
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-37
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-20
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-37
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-35
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-35
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-33
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-30
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-35
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-32
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-31
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-20
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-31
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-26
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-26
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-31
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-30
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-27
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-30
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-25
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-24
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-22
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-16
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-13
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-28
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-25
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-20
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-20
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-17
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-27
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-16
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-27
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-23
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-17
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-17
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-16
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-26
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-22
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-21
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-26
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-19
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-24
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-21
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-21
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-16
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-24
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-22
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-15
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-23
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-22
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-23
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-23
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-20
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-18
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-22
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-22
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-20
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-20
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-18
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-20
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-18
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	9e-20
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-19
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-17
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-16
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-15
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-19
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-17
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-15
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-14
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-12
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	7e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	9e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-09
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-06
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-09
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	6e-09
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	8e-08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-08
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	7e-08
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-07
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	7e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	7e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	7e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	9e-04
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	4e-04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	4e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  298 bits (765), Expect = 2e-92
 Identities = 137/520 (26%), Positives = 214/520 (41%), Gaps = 47/520 (9%)

Query: 36  GCIDSEREALLKLKQDLIDPSNRLASWNTGDGDCCKWAGVFCSNITGHVLQLSLQNPFSY 95
             +  E   L+  K  L D  N L  W++   + C + GV C +    V  + L      
Sbjct: 8   QSLYREIHQLISFKDVLPDK-NLLPDWSSNK-NPCTFDGVTCRD--DKVTSIDL------ 57

Query: 96  LGGDLREVKAGSNYERSKLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRY 155
                      S+   +     V+ SL+ L  L  L LS +   G  +        +L  
Sbjct: 58  -----------SSKPLNVGFSAVSSSLLSLTGLESLFLSNSHING-SVSG-FKCSASLTS 104

Query: 156 LNLSGAKFAGMIP--LQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQ 213
           L+LS    +G +     LG+ S L++L++S   L         +S    L  LE LDLS 
Sbjct: 105 LDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD----FPGKVSGGLKLNSLEVLDLSA 160

Query: 214 MNLSKA-SDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQ 272
            ++S A     ++++    LK L ++  ++     +  +   +L+ L ++ NNF   +  
Sbjct: 161 NSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGI-- 216

Query: 273 YGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLE 332
              ++     L  +D+S N+  G     +   T L+ L++  N F    P        L+
Sbjct: 217 --PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP--PLPLKSLQ 272

Query: 333 FLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLS 392
           +LS+A N   G I         ++  LDLSGN    G +P  F     L S+ LS  + S
Sbjct: 273 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGN-HFYGAVPPFFGSCSLLESLALSSNNFS 331

Query: 393 QDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFK-SLHTLELGHNSLFGPLPPA 451
            +     DT        L+ LDLS  + SG L   L     SL TL+L  N+  GP+ P 
Sbjct: 332 GELPM--DTLLKM--RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 387

Query: 452 LGE--LSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTW 509
           L +   ++L++L L NN   G IP +L   S L  L LS N L+ ++      +L+KL  
Sbjct: 388 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS-SLGSLSKLRD 446

Query: 510 FSASGNSLILKFNPNWVPPFQLETLQLRSCHLGPHFPSWL 549
                N L  +     +    LETL L    L    PS L
Sbjct: 447 LKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL 486

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  223 bits (571), Expect = 1e-64
 Identities = 116/407 (28%), Positives = 173/407 (42%), Gaps = 34/407 (8%)

Query: 120 PSLVDLKHLIHLDLSGNDFEGIQIP---KYLGSLENLRYLNLSGAKFAGMIPLQLGNLSN 176
              + L  L  LDLS N   G               L++L +SG K +G + +      N
Sbjct: 145 SGGLKLNSLEVLDLSANSISG-ANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVN 201

Query: 177 LQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLS-KASDWLLVTNSLPSLKVL 235
           L++LD+S    S        + +L     L+HLD+S   LS   S  +   ++   LK+L
Sbjct: 202 LEFLDVSSNNFS------TGIPFLGDCSALQHLDISGNKLSGDFSRAI---STCTELKLL 252

Query: 236 KLTKCQL-CHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFG-LRNLVFIDLSSNQF 293
            ++  Q     PP       SL+ L LA N F   +     ++ G    L  +DLS N F
Sbjct: 253 NISSNQFVGPIPP---LPLKSLQYLSLAENKFTGEI---PDFLSGACDTLTGLDLSGNHF 306

Query: 294 QGQIPIGLRNLTSLRHLDLRFNYFNSTTP-GWLSKFNDLEFLSVAWNSLQGTISSVGLEN 352
            G +P    + + L  L L  N F+   P   L K   L+ L +++N   G +       
Sbjct: 307 YGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL 366

Query: 353 LTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQ-DFS-QVLDTFSSCGAYAL 410
             S+ TLDLS N    G I  +   LC+     L  + L    F+ ++  T S+C    L
Sbjct: 367 SASLLTLDLSSN-NFSGPILPN---LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSE--L 420

Query: 411 ESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNG 470
            SL LS   +SG + + L     L  L+L  N L G +P  L  + +L+ L L  N L G
Sbjct: 421 VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG 480

Query: 471 FIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSL 517
            IP  L   ++L ++ LSNN+L   + +     L  L     S NS 
Sbjct: 481 EIPSGLSNCTNLNWISLSNNRLTGEIPK-WIGRLENLAILKLSNNSF 526

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  220 bits (563), Expect = 2e-63
 Identities = 112/381 (29%), Positives = 177/381 (46%), Gaps = 26/381 (6%)

Query: 121 SLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYL 180
            +    +L  LD+S N+F    IP +LG    L++L++SG K +G     +   + L+ L
Sbjct: 195 DVSRCVNLEFLDVSSNNFST-GIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLL 252

Query: 181 DLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLS-KASDWLLVTNSLPSLKVLKLTK 239
           ++S             +     L  L++L L++   + +  D+L    +  +L  L L+ 
Sbjct: 253 NISSNQFVG------PIPP-LPLKSLQYLSLAENKFTGEIPDFLS--GACDTLTGLDLSG 303

Query: 240 CQLC-HFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIP 298
                  PP    + S L++L L+ NNF   L      +  +R L  +DLS N+F G++P
Sbjct: 304 NHFYGAVPPFFG-SCSLLESLALSSNNFSGELPM--DTLLKMRGLKVLDLSFNEFSGELP 360

Query: 299 IGLRNLT-SLRHLDLRFNYFNSTTPGWLSKF--NDLEFLSVAWNSLQGTISSVGLENLTS 355
             L NL+ SL  LDL  N F+      L +   N L+ L +  N   G I    L N + 
Sbjct: 361 ESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP-TLSNCSE 419

Query: 356 IETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDL 415
           + +L LS N  L G IP+S   L KL  + L L  L     ++           LE+L L
Sbjct: 420 LVSLHLSFNY-LSGTIPSSLGSLSKLRDLKLWLNMLE---GEIPQELMYVKT--LETLIL 473

Query: 416 SICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLS 475
               ++G + + L    +L+ + L +N L G +P  +G L +L  L LSNN  +G IP  
Sbjct: 474 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE 533

Query: 476 LGKLSHLEYLDLSNNKLNASL 496
           LG    L +LDL+ N  N ++
Sbjct: 534 LGDCRSLIWLDLNTNLFNGTI 554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  210 bits (536), Expect = 1e-59
 Identities = 109/425 (25%), Positives = 173/425 (40%), Gaps = 33/425 (7%)

Query: 113 KLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLG 172
              G V P       L  L LS N+F G      L  +  L+ L+LS  +F+G +P  L 
Sbjct: 305 HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLT 364

Query: 173 NLS-NLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLS-KASDWLLVTNSLP 230
           NLS +L  LDLS    S     +      +    L+ L L     + K    L    +  
Sbjct: 365 NLSASLLTLDLSSNNFSG---PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS---NCS 418

Query: 231 SLKVLKLTKCQLC-HFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLS 289
            L  L L+   L    P  L  + S L+ L L +N  +  +      +  ++ L  + L 
Sbjct: 419 ELVSLHLSFNYLSGTIPSSLG-SLSKLRDLKLWLNMLEGEIP---QELMYVKTLETLILD 474

Query: 290 SNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVG 349
            N   G+IP GL N T+L  + L  N      P W+ +  +L  L ++ NS  G I +  
Sbjct: 475 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA-E 533

Query: 350 LENLTSIETLDLSGNSKLGGKIPTSFARLCKLTS---------VDLSLIDLSQDFSQVLD 400
           L +  S+  LDL+ N    G IP +  +     +         V +    + ++     +
Sbjct: 534 LGDCRSLIWLDLNTN-LFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 592

Query: 401 TFSSCGA--------YALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPAL 452
                G               +++     GH +       S+  L++ +N L G +P  +
Sbjct: 593 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI 652

Query: 453 GELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSA 512
           G +  L  L+L +N ++G IP  +G L  L  LDLS+NKL+  + +     LT LT    
Sbjct: 653 GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ-AMSALTMLTEIDL 711

Query: 513 SGNSL 517
           S N+L
Sbjct: 712 SNNNL 716

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  202 bits (515), Expect = 1e-56
 Identities = 119/413 (28%), Positives = 177/413 (42%), Gaps = 54/413 (13%)

Query: 113 KLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQL- 171
           KL G  + ++     L  L++S N F G  IP     L++L+YL+L+  KF G IP  L 
Sbjct: 234 KLSGDFSRAISTCTELKLLNISSNQFVG-PIPP--LPLKSLQYLSLAENKFTGEIPDFLS 290

Query: 172 GNLSNLQYLDLSGTFLSNYDLHVDSL-SWLSGLYMLEHLDLSQMNLSKA--SDWLLVTNS 228
           G    L  LDLSG           ++  +     +LE L LS  N S     D LL    
Sbjct: 291 GACDTLTGLDLSGNHFYG------AVPPFFGSCSLLESLALSSNNFSGELPMDTLL---K 341

Query: 229 LPSLKVLKLTKCQLC-HFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFID 287
           +  LKVL L+  +     P  L+   +SL  L L+ NNF   +            L  + 
Sbjct: 342 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP-NLCQNPKNTLQELY 400

Query: 288 LSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISS 347
           L +N F G+IP  L N + L  L L FNY + T P  L   + L  L +  N L+G I  
Sbjct: 401 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 460

Query: 348 VGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGA 407
             L  + ++ETL L  N  L G+IP+    L   T+                        
Sbjct: 461 -ELMYVKTLETLILDFN-DLTGEIPSG---LSNCTN------------------------ 491

Query: 408 YALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNM 467
             L  + LS  +++G +   + + ++L  L+L +NS  G +P  LG+  SL  LDL+ N+
Sbjct: 492 --LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549

Query: 468 LNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILK 520
            NG IP ++ K S      ++ N +       +  N         +GN L  +
Sbjct: 550 FNGTIPAAMFKQS----GKIAANFIAGKRYV-YIKNDGMKKECHGAGNLLEFQ 597

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  157 bits (400), Expect = 3e-41
 Identities = 99/410 (24%), Positives = 170/410 (41%), Gaps = 35/410 (8%)

Query: 88  SLQNPFSYLGGDLREVKAGSNYERSKLGGKVNPSL--VDLKHLIHLDLSGNDFEGIQIPK 145
            L    + L   L  +   SN       G + P+L       L  L L  N F G +IP 
Sbjct: 358 ELPESLTNLSASLLTLDLSSN----NFSGPILPNLCQNPKNTLQELYLQNNGFTG-KIPP 412

Query: 146 YLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSL-SWLSGLY 204
            L +   L  L+LS    +G IP  LG+LS L+ L L    L         +   L  + 
Sbjct: 413 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE------GEIPQELMYVK 466

Query: 205 MLEHLDLSQMNLS-KASDWLLVTNSLPSLKVLKLTKCQLC-HFPPLLSANFSSLKALHLA 262
            LE L L   +L+ +    L   ++  +L  + L+  +L    P  +     +L  L L+
Sbjct: 467 TLETLILDFNDLTGEIPSGL---SNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKLS 522

Query: 263 INNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTP 322
            N+F  ++    + +   R+L+++DL++N F G IP  +   +      +  N+      
Sbjct: 523 NNSFSGNIP---AELGDCRSLIWLDLNTNLFNGTIPAAMFKQS----GKIAANFIAGKRY 575

Query: 323 GWLSKFNDLEFLSVAWNSLQGTIS-SVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKL 381
            ++      +    A N L+     S  L  L++    +++     GG    +F     +
Sbjct: 576 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRV-YGGHTSPTFDNNGSM 634

Query: 382 TSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGH 441
             +D+S   LS    + + +        L  L+L    ISG + +++   + L+ L+L  
Sbjct: 635 MFLDMSYNMLSGYIPKEIGSMPY-----LFILNLGHNDISGSIPDEVGDLRGLNILDLSS 689

Query: 442 NSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNK 491
           N L G +P A+  L+ L ++DLSNN L+G IP  +G+          NN 
Sbjct: 690 NKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP-EMGQFETFPPAKFLNNP 738

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  145 bits (369), Expect = 3e-37
 Identities = 61/301 (20%), Positives = 110/301 (36%), Gaps = 60/301 (19%)

Query: 254 SSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLR 313
             + ++ L+    +       S +  L  L  + LS++   G +  G +   SL  LDL 
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLS 108

Query: 314 FNYFNSTTP--GWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKI 371
            N  +        L   + L+FL+V+ N+L       G   L S+E LDLS NS + G  
Sbjct: 109 RNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS-ISGAN 167

Query: 372 PTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQF 431
              +                                  L+ L +S  +ISG +   + + 
Sbjct: 168 VVGWVLSDGCGE--------------------------LKHLAISGNKISGDVD--VSRC 199

Query: 432 KSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNK 491
            +L  L++  N+    +P  LG+ S+L+ LD+S N L+G    ++   + L+ L++S+N+
Sbjct: 200 VNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ 258

Query: 492 LNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLGPHFPSWLHS 551
               +  +   +L                           + L L         P +L  
Sbjct: 259 FVGPIPPLPLKSL---------------------------QYLSLAENKFTGEIPDFLSG 291

Query: 552 Q 552
            
Sbjct: 292 A 292

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  195 bits (499), Expect = 4e-55
 Identities = 95/450 (21%), Positives = 158/450 (35%), Gaps = 30/450 (6%)

Query: 119 NPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQ 178
             +      L  LD+  N    +  P+    L  L+ LNL   + + +        +NL 
Sbjct: 42  AANFTRYSQLTSLDVGFNTISKL-EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLT 100

Query: 179 YLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLT 238
            L L    +    +  +          L  LDLS   LS           L +L+ L L+
Sbjct: 101 ELHLMSNSIQK--IKNNPFVKQK---NLITLDLSHNGLSSTKLGTQ--VQLENLQELLLS 153

Query: 239 KCQLCHFPPLLSANF--SSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQ 296
             ++          F  SSLK L L+ N               +  L  + L++ Q    
Sbjct: 154 NNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP---GCFHAIGRLFGLFLNNVQLGPS 210

Query: 297 IPIGLR---NLTSLRHLDLRFNYFNSTTPGWLS--KFNDLEFLSVAWNSLQGTISSVGLE 351
           +   L      TS+R+L L  +  ++T+       K+ +L  L +++N+L    +     
Sbjct: 211 LTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS-FA 269

Query: 352 NLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLS----LIDLSQDFSQVLDTFSSCGA 407
            L  +E   L  N  +      S   L  +  ++L        +S      +D FS    
Sbjct: 270 WLPQLEYFFLEYN-NIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL 328

Query: 408 YALESLDLSICQISGHLTNQLLQFKSLHTLELGHN--SLFGPLPPALGEL--SSLKKLDL 463
             LE L++    I G  +N      +L  L L ++  SL          L  S L  L+L
Sbjct: 329 KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNL 388

Query: 464 SNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNP 523
           + N ++     +   L HLE LDL  N++   L+   +  L  +     S N  +     
Sbjct: 389 TKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRN 448

Query: 524 NWVPPFQLETLQLRSCHLG--PHFPSWLHS 551
           ++     L+ L LR   L      PS    
Sbjct: 449 SFALVPSLQRLMLRRVALKNVDSSPSPFQP 478

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  187 bits (477), Expect = 5e-52
 Identities = 96/437 (21%), Positives = 154/437 (35%), Gaps = 28/437 (6%)

Query: 121 SLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYL 180
           +     +L  L L  N  + I         +NL  L+LS    +         L NLQ L
Sbjct: 92  TFAFCTNLTELHLMSNSIQKI-KNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQEL 150

Query: 181 DLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKC 240
            LS   +    L  + L        L+ L+LS   + + S      +++  L  L L   
Sbjct: 151 LLSNNKIQ--ALKSEELDIF-ANSSLKKLELSSNQIKEFSPGCF--HAIGRLFGLFLNNV 205

Query: 241 QLCHFPP---LLSANFSSLKALHLAINNF---DNSLFQYGSWVFGLRNLVFIDLSSNQFQ 294
           QL         L    +S++ L L+ +      N+ F          NL  +DLS N   
Sbjct: 206 QLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG----LKWTNLTMLDLSYNNLN 261

Query: 295 GQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLE--- 351
                    L  L +  L +N         L    ++ +L++  +  + +IS   L    
Sbjct: 262 VVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKID 321

Query: 352 -----NLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCG 406
                 L  +E L++  N  + G     F  L  L  + LS    S   +   +TF S  
Sbjct: 322 DFSFQWLKCLEHLNMEDN-DIPGIKSNMFTGLINLKYLSLSNSFTSL-RTLTNETFVSLA 379

Query: 407 AYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPP-ALGELSSLKKLDLSN 465
              L  L+L+  +IS   ++       L  L+LG N +   L       L ++ ++ LS 
Sbjct: 380 HSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSY 439

Query: 466 NMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIH-FVNLTKLTWFSASGNSLILKFNPN 524
           N        S   +  L+ L L    L    S    F  L  LT    S N++    +  
Sbjct: 440 NKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM 499

Query: 525 WVPPFQLETLQLRSCHL 541
                +LE L L+  +L
Sbjct: 500 LEGLEKLEILDLQHNNL 516

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  179 bits (455), Expect = 7e-49
 Identities = 87/404 (21%), Positives = 137/404 (33%), Gaps = 40/404 (9%)

Query: 125 LKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSG 184
             +L  LDLS N+   +        L  L Y  L       +    L  L N++YL+L  
Sbjct: 247 WTNLTMLDLSYNNLNVV-GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR 305

Query: 185 TF----LSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKC 240
           +F    +S   L          L  LEHL++   ++      +     L +LK L L+  
Sbjct: 306 SFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMF--TGLINLKYLSLSNS 363

Query: 241 QLCHFPP----LLSANFSSLKALHLAINNFDNSLFQYGSWVF-GLRNLVFIDLSSNQFQG 295
                       +S   S L  L+L      N + +  S  F  L +L  +DL  N+   
Sbjct: 364 FTSLRTLTNETFVSLAHSPLHILNLT----KNKISKIESDAFSWLGHLEVLDLGLNEIGQ 419

Query: 296 QIPIG-LRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVG-LENL 353
           ++     R L ++  + L +N +   T    +    L+ L +   +L+   SS    + L
Sbjct: 420 ELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPL 479

Query: 354 TSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESL 413
            ++  LDLS N  +          L KL  +DL   +L+                     
Sbjct: 480 RNLTILDLSNN-NIANINDDMLEGLEKLEILDLQHNNLA--------------------- 517

Query: 414 DLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIP 473
            L      G     L     LH L L  N           +L  LK +DL  N LN    
Sbjct: 518 RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPA 577

Query: 474 LSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSL 517
                   L+ L+L  N + +   ++       LT      N  
Sbjct: 578 SVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPF 621

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  177 bits (451), Expect = 2e-48
 Identities = 83/440 (18%), Positives = 145/440 (32%), Gaps = 24/440 (5%)

Query: 125 LKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSG 184
             ++  L+L+ N    +           L  L++     + + P     L  L+ L+L  
Sbjct: 24  PTNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 82

Query: 185 TFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCH 244
             LS   L   + ++ +    L  L L   ++ K  +         +L  L L+   L  
Sbjct: 83  NELSQ--LSDKTFAFCT---NLTELHLMSNSIQKIKNNPF--VKQKNLITLDLSHNGLSS 135

Query: 245 FPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNL 304
                     +L+ L L+ N    +L      +F   +L  ++LSSNQ +   P     +
Sbjct: 136 TKLGTQVQLENLQELLLSNNKI-QALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAI 194

Query: 305 TSLRHLDLRFNYFNSTTPGWLSKF---NDLEFLSVAWNSLQGTISSV-GLENLTSIETLD 360
             L  L L       +    L        +  LS++ + L  T ++       T++  LD
Sbjct: 195 GRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLD 254

Query: 361 LSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSS----CGAYALESLDLS 416
           LS N  L      SFA L +L    L   ++   FS  L    +        +     +S
Sbjct: 255 LSYN-NLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSIS 313

Query: 417 ICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIP--- 473
           +  +           K L  L +  N + G        L +LK L LSN+  +       
Sbjct: 314 LASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNE 373

Query: 474 -LSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPN-WVPPFQL 531
                  S L  L+L+ NK++  +    F  L  L       N +  +     W     +
Sbjct: 374 TFVSLAHSPLHILNLTKNKIS-KIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENI 432

Query: 532 ETLQLRSCHLGPHFPSWLHS 551
             + L          +    
Sbjct: 433 FEIYLSYNKYLQLTRNSFAL 452

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  157 bits (399), Expect = 2e-41
 Identities = 82/377 (21%), Positives = 138/377 (36%), Gaps = 51/377 (13%)

Query: 152 NLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDL 211
           +    + S  K    +P  L   +N+  L+L+   L    L   + +       L  LD+
Sbjct: 5   SHEVADCSHLKLTQ-VPDDL--PTNITVLNLTHNQLRR--LPAANFT---RYSQLTSLDV 56

Query: 212 SQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLF 271
               +SK    L     LP LKVL L   +L                            F
Sbjct: 57  GFNTISKLEPELC--QKLPMLKVLNLQHNELSQLSD---------------------KTF 93

Query: 272 QYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDL 331
                     NL  + L SN  Q           +L  LDL  N  +ST  G   +  +L
Sbjct: 94  A------FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENL 147

Query: 332 EFLSVAWNSLQGTISSV-GLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLID 390
           + L ++ N +Q   S    +   +S++ L+LS N ++    P  F  + +L  + L+ + 
Sbjct: 148 QELLLSNNKIQALKSEELDIFANSSLKKLELSSN-QIKEFSPGCFHAIGRLFGLFLNNVQ 206

Query: 391 LSQDFSQVLDTFSSCGAYALESLDLSICQISG--HLTNQLLQFKSLHTLELGHNSLFGPL 448
           L    ++ L         ++ +L LS  Q+S   + T   L++ +L  L+L +N+L    
Sbjct: 207 LGPSLTEKL--CLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 264

Query: 449 PPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIH-------- 500
             +   L  L+   L  N +      SL  L ++ YL+L  +    S+S           
Sbjct: 265 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS 324

Query: 501 FVNLTKLTWFSASGNSL 517
           F  L  L   +   N +
Sbjct: 325 FQWLKCLEHLNMEDNDI 341

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  148 bits (376), Expect = 3e-38
 Identities = 72/388 (18%), Positives = 132/388 (34%), Gaps = 57/388 (14%)

Query: 113 KLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLG 172
            +    + SL  L ++ +L+L                  +    ++S A    +      
Sbjct: 283 NIQHLFSHSLHGLFNVRYLNLKR----------------SFTKQSISLASLPKIDDFSFQ 326

Query: 173 NLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLS--QMNLSKASDWLLVTNSLP 230
            L  L++L++    +     ++      +GL  L++L LS    +L   ++   V+ +  
Sbjct: 327 WLKCLEHLNMEDNDIPGIKSNM-----FTGLINLKYLSLSNSFTSLRTLTNETFVSLAHS 381

Query: 231 SLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSS 290
            L +L LTK ++                            F        L +L  +DL  
Sbjct: 382 PLHILNLTKNKISKIES---------------------DAFS------WLGHLEVLDLGL 414

Query: 291 NQFQGQIPIG-LRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVG 349
           N+   ++     R L ++  + L +N +   T    +    L+ L +   +L+   SS  
Sbjct: 415 NEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPS 474

Query: 350 -LENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLS---LIDLSQDFSQVLDTFSSC 405
             + L ++  LDLS N  +          L KL  +DL    L  L +  +     +   
Sbjct: 475 PFQPLRNLTILDLSNN-NIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLK 533

Query: 406 GAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSN 465
           G   L  L+L                  L  ++LG N+L            SLK L+L  
Sbjct: 534 GLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQK 593

Query: 466 NMLNGFIPLSLGK-LSHLEYLDLSNNKL 492
           N++        G    +L  LD+  N  
Sbjct: 594 NLITSVEKKVFGPAFRNLTELDMRFNPF 621

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 59.6 bits (145), Expect = 2e-09
 Identities = 27/147 (18%), Positives = 52/147 (35%), Gaps = 8/147 (5%)

Query: 107 SNYERSKLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGM 166
           +   +    G     L  L HL  L+L  N F+ I   +    L  L+ ++L       +
Sbjct: 517 ARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEI-PVEVFKDLFELKIIDLGLNNLNTL 575

Query: 167 IPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLS---KASDWL 223
                 N  +L+ L+L    ++     V+   +      L  LD+         ++  W 
Sbjct: 576 PASVFNNQVSLKSLNLQKNLIT----SVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWF 631

Query: 224 LVTNSLPSLKVLKLTKCQLCHFPPLLS 250
           +   +     + +L+   LC+ PP   
Sbjct: 632 VNWINETHTNIPELSSHYLCNTPPHYH 658

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  175 bits (446), Expect = 4e-48
 Identities = 84/430 (19%), Positives = 140/430 (32%), Gaps = 25/430 (5%)

Query: 119 NPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQ 178
           N +   L +L  LDL+      I       S   L  L L+      M    L     L+
Sbjct: 50  NTTFSRLINLTFLDLTRCQIYWI-HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALK 108

Query: 179 YLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLT 238
           +L    T +S   +    L     L   E L L   ++S              LKVL   
Sbjct: 109 HLFFIQTGIS--SIDFIPLHNQKTL---ESLYLGSNHISSIKLPKG--FPTEKLKVLDFQ 161

Query: 239 KCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIP 298
              + +      ++      L L +N   N +       F       ++    Q    I 
Sbjct: 162 NNAIHYLSKEDMSSLQQATNLSLNLNG--NDIAGIEPGAFDSAVFQSLNFGGTQNLLVIF 219

Query: 299 IGLRN--LTSLRHLDLRFNYFNSTTPGWLSKF--NDLEFLSVAWNSLQGTISSVGLENLT 354
            GL+N  + SL             +P          +E +++  +      S+      +
Sbjct: 220 KGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNT-FHCFS 278

Query: 355 SIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLD 414
            ++ LDL+       ++P+    L  L  + LS              F S     L  L 
Sbjct: 279 GLQELDLTATHL--SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPS-----LTHLS 331

Query: 415 LSICQISGHLTNQLLQ-FKSLHTLELGHNSL--FGPLPPALGELSSLKKLDLSNNMLNGF 471
           +        L    L+  ++L  L+L H+ +         L  LS L+ L+LS N     
Sbjct: 332 IKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSL 391

Query: 472 IPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQL 531
              +  +   LE LDL+  +L    ++  F NL  L   + S + L +     +     L
Sbjct: 392 KTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL 451

Query: 532 ETLQLRSCHL 541
           + L L+  H 
Sbjct: 452 QHLNLQGNHF 461

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  166 bits (423), Expect = 6e-45
 Identities = 94/446 (21%), Positives = 160/446 (35%), Gaps = 30/446 (6%)

Query: 120 PSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLR--YLNLSGAKFAGMIPLQLGNLSNL 177
           P     + L  LD   N    +   + + SL+      LNL+G   AG I     + +  
Sbjct: 147 PKGFPTEKLKVLDFQNNAIHYLS-KEDMSSLQQATNLSLNLNGNDIAG-IEPGAFDSAVF 204

Query: 178 QYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKL 237
           Q L+  G    N  +    L   S +  L       M+    S  +       S++ + L
Sbjct: 205 QSLNFGG--TQNLLVIFKGLK-NSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINL 261

Query: 238 TKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQI 297
            K    +        FS L+ L L        L +  S + GL  L  + LS+N+F+   
Sbjct: 262 QKHYFFNISSNTFHCFSGLQELDLT----ATHLSELPSGLVGLSTLKKLVLSANKFENLC 317

Query: 298 PIGLRNLTSLRHLDLRFNYFNST-TPGWLSKFNDLEFLSVAWNSLQG-TISSVGLENLTS 355
            I   N  SL HL ++ N        G L    +L  L ++ + ++     ++ L NL+ 
Sbjct: 318 QISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSH 377

Query: 356 IETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDL 415
           +++L+LS N +       +F    +L  +DL+                    + L+ L+L
Sbjct: 378 LQSLNLSYN-EPLSLKTEAFKECPQLELLDLA----FTRLKVKDAQSPFQNLHLLKVLNL 432

Query: 416 SICQISGHLTNQLLQFKSLHTLELGHNSL---FGPLPPALGELSSLKKLDLSNNMLNGFI 472
           S   +            +L  L L  N           +L  L  L+ L LS   L+   
Sbjct: 433 SHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSID 492

Query: 473 PLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLE 532
             +   L  + ++DLS+N+L  S S     +L  +   + + N + +          Q  
Sbjct: 493 QHAFTSLKMMNHVDLSHNRLT-SSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQR 550

Query: 533 TLQLR------SCHLGPHFPSWLHSQ 552
           T+ LR      +C     F  W    
Sbjct: 551 TINLRQNPLDCTCSNIY-FLEWYKEN 575

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  159 bits (405), Expect = 2e-42
 Identities = 87/383 (22%), Positives = 154/383 (40%), Gaps = 19/383 (4%)

Query: 116 GKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGS-LENLRYLNLSGAKFAGMIPLQLGNL 174
             + P   D      L+  G     +       S +++L            + P     L
Sbjct: 192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGL 251

Query: 175 S--NLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSL 232
              +++ ++L   +  N      S +       L+ LDL+  +LS+    L     L +L
Sbjct: 252 CEMSVESINLQKHYFFN-----ISSNTFHCFSGLQELDLTATHLSELPSGL---VGLSTL 303

Query: 233 KVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQ 292
           K L L+  +  +   + ++NF SL  L +  N     L      +  L NL  +DLS + 
Sbjct: 304 KKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGT--GCLENLENLRELDLSHDD 361

Query: 293 FQ--GQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGL 350
            +      + LRNL+ L+ L+L +N   S       +   LE L +A+  L+   +    
Sbjct: 362 IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPF 421

Query: 351 ENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYAL 410
           +NL  ++ L+LS +  L       F  L  L  ++L      +   Q  ++  + G   L
Sbjct: 422 QNLHLLKVLNLSHS-LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLG--RL 478

Query: 411 ESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNG 470
           E L LS C +S    +     K ++ ++L HN L      AL  L  +  L+L++N ++ 
Sbjct: 479 EILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISI 537

Query: 471 FIPLSLGKLSHLEYLDLSNNKLN 493
            +P  L  LS    ++L  N L+
Sbjct: 538 ILPSLLPILSQQRTINLRQNPLD 560

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  156 bits (397), Expect = 2e-41
 Identities = 72/392 (18%), Positives = 110/392 (28%), Gaps = 49/392 (12%)

Query: 130 HLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSN 189
             +         +IP  L    +   L  S      +       L NL +LDL+   +  
Sbjct: 16  TYNCENLGLN--EIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY- 70

Query: 190 YDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLL 249
             +H D+                               S   L  L LT   L       
Sbjct: 71  -WIHEDTFQ-----------------------------SQHRLDTLVLTANPLIFMAETA 100

Query: 250 SANFSSLKALHLAINNF---DNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTS 306
            +   +LK L          D             + L  + L SN               
Sbjct: 101 LSGPKALKHLFFIQTGISSIDFIPLH------NQKTLESLYLGSNHISSIKLPKGFPTEK 154

Query: 307 LRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSK 366
           L+ LD + N  +  +   +S       LS+  N         G  +    ++L+  G   
Sbjct: 155 LKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQN 214

Query: 367 LGGKIP-TSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLT 425
           L         + +  L       +D           F      ++ES++L         +
Sbjct: 215 LLVIFKGLKNSTIQSLWLGTFEDMDDEDISP---AVFEGLCEMSVESINLQKHYFFNISS 271

Query: 426 NQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYL 485
           N    F  L  L+L    L   LP  L  LS+LKKL LS N       +S      L +L
Sbjct: 272 NTFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHL 330

Query: 486 DLSNNKLNASLSEIHFVNLTKLTWFSASGNSL 517
            +  N     L      NL  L     S + +
Sbjct: 331 SIKGNTKRLELGTGCLENLENLRELDLSHDDI 362

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  150 bits (380), Expect = 4e-39
 Identities = 79/424 (18%), Positives = 134/424 (31%), Gaps = 50/424 (11%)

Query: 125 LKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSG 184
                 L+ S N    IQ       L NL +L+L+  +   +      +   L  L L+ 
Sbjct: 32  PNSTECLEFSFNVLPTIQ-NTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA 90

Query: 185 TFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCH 244
             L        + + LSG   L+HL   Q  +S      L  ++  +L+ L L    +  
Sbjct: 91  NPLIFM-----AETALSGPKALKHLFFIQTGISSIDFIPL--HNQKTLESLYLGSNHISS 143

Query: 245 FPPLLSANFSSLKALHLAINNF---DNSLFQYGSWVFGLRNL--VFIDLSSNQFQGQIPI 299
                      LK L    N                  L+    + ++L+ N   G I  
Sbjct: 144 IKLPKGFPTEKLKVLDFQNNAIHYLSKEDMS------SLQQATNLSLNLNGNDIAG-IEP 196

Query: 300 GLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETL 359
           G  +    + L+             L                           + S+   
Sbjct: 197 GAFDSAVFQSLNFGGTQNLLVIFKGLK-----------------------NSTIQSLWLG 233

Query: 360 DLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQ 419
                       P  F  LC+++   +  I+L + +   + + +      L+ LDL+   
Sbjct: 234 TFEDMD-DEDISPAVFEGLCEMS---VESINLQKHYFFNISSNTFHCFSGLQELDLTATH 289

Query: 420 ISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFI-PLSLGK 478
           +S  L + L+   +L  L L  N        +     SL  L +  N     +    L  
Sbjct: 290 LS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLEN 348

Query: 479 LSHLEYLDLSNNKLNAS-LSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLR 537
           L +L  LDLS++ +  S    +   NL+ L   + S N  +      +    QLE L L 
Sbjct: 349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLA 408

Query: 538 SCHL 541
              L
Sbjct: 409 FTRL 412

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 50.0 bits (120), Expect = 2e-06
 Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 7/102 (6%)

Query: 112 SKLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQL 171
            K   +   SL  L  L  L LS  D   I       SL+ + +++LS  +        L
Sbjct: 462 PKGNIQKTNSLQTLGRLEILVLSFCDLSSI-DQHAFTSLKMMNHVDLSHNRLTSSSIEAL 520

Query: 172 GNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQ 213
            +L  + YL+L+   +S     +     L  L     ++L Q
Sbjct: 521 SHLKGI-YLNLASNHISIILPSL-----LPILSQQRTINLRQ 556

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  175 bits (446), Expect = 6e-48
 Identities = 68/511 (13%), Positives = 154/511 (30%), Gaps = 57/511 (11%)

Query: 39  DSEREALLKLKQDLIDPSNRL-ASWNTGDGDCCKWAGVFCSNITGHVLQLSLQNPFSYLG 97
           D+     L    + I     L   W+  +G      G              L    +  G
Sbjct: 15  DAIVPIKLSRTAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPG 74

Query: 98  ------GDLREVKAGSNYERSKLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLE 151
                 G +  +            G+V  ++  L  L  L L  +  +  +       + 
Sbjct: 75  VSLNSNGRVTGLSLEGF----GASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGIS 130

Query: 152 NLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDL 211
                              +       + DL    +++                   +  
Sbjct: 131 ANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQ 190

Query: 212 SQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLF 271
              N++  S  ++    L  L+   +            +    + +         D    
Sbjct: 191 LSNNITFVSKAVM---RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQ-YKTEDLKWD 246

Query: 272 QYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNS--------TTPG 323
                   L++L  +++ +     ++P  L+ L  ++ +++  N   S            
Sbjct: 247 N-------LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALA 299

Query: 324 WLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTS 383
                  ++ + + +N+L+       L+ +  +  L+   N +L GK+P +F    KL S
Sbjct: 300 DAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYN-QLEGKLP-AFGSEIKLAS 357

Query: 384 VDLS---LIDLSQDFSQVLDTFSSCGAYALESLDLSICQISG-HLTNQLLQFKSLHTLEL 439
           ++L+   + ++  +F    +         +E+L  +  ++              +  ++ 
Sbjct: 358 LNLAYNQITEIPANFCGFTE--------QVENLSFAHNKLKYIPNIFDAKSVSVMSAIDF 409

Query: 440 GHNSL-------FGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKL 492
            +N +       F PL P   +  ++  ++LSNN ++ F        S L  ++L  N L
Sbjct: 410 SYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNML 469

Query: 493 ------NASLSEIHFVNLTKLTWFSASGNSL 517
                 +      +F N   LT      N L
Sbjct: 470 TEIPKNSLKDENENFKNTYLLTSIDLRFNKL 500

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  164 bits (417), Expect = 5e-44
 Identities = 56/442 (12%), Positives = 138/442 (31%), Gaps = 62/442 (14%)

Query: 120 PSLVDLKHLIHLDLSGNDFEGIQ------------------IPKYLGSLENLRYLNLSGA 161
            +++ L  L    +  + F                            +L++L  + +   
Sbjct: 200 KAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNC 259

Query: 162 KFAGMIPLQLGNLSNLQYLDLSG---TFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSK 218
                +P  L  L  +Q ++++               +L+       ++ + +   NL  
Sbjct: 260 PNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT 319

Query: 219 ASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFD---NSLFQYGS 275
                 +   +  L +L+    QL    P    +   L +L+LA N       +      
Sbjct: 320 FPVETSLQK-MKKLGMLECLYNQLEGKLPAFG-SEIKLASLNLAYNQITEIPANFCG--- 374

Query: 276 WVFGLRNLVFIDLSSNQFQG-QIPIGLRNLTSLRHLDLRFNYFNSTT-------PGWLSK 327
                  +  +  + N+ +        ++++ +  +D  +N   S              K
Sbjct: 375 ---FTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFK 431

Query: 328 FNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNS------KLGGKIPTSFARLCKL 381
             ++  ++++ N +      +     + + +++L GN               +F     L
Sbjct: 432 GINVSSINLSNNQISKFPKEL-FSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLL 490

Query: 382 TSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQIS------GHLTNQLLQFKSLH 435
           TS+DL         +++ D F +     L  +DLS    S       + +  L  F   +
Sbjct: 491 TSIDLR----FNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSST-LKGFGIRN 545

Query: 436 TLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNAS 495
             +   N      P  +    SL +L + +N +   +   +    ++  LD+ +N    S
Sbjct: 546 QRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNI-S 601

Query: 496 LSEIHFVNLTKLTWFSASGNSL 517
           +   +     +   +    +  
Sbjct: 602 IDLSYVCPYIEAGMYMLFYDKT 623

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  161 bits (410), Expect = 5e-43
 Identities = 70/453 (15%), Positives = 139/453 (30%), Gaps = 53/453 (11%)

Query: 100 LREVKAGSNYERSKLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLS 159
           L+E+    N +     G       +      LD+ G    G+     L S   +  L+L 
Sbjct: 35  LKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGA-QPGVS----LNSNGRVTGLSLE 89

Query: 160 GAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKA 219
           G   +G +P  +G L+ L+ L L        +  +     +S     E     +M+  K 
Sbjct: 90  GFGASGRVPDAIGQLTELEVLALGSHGEK-VNERLFGPKGISANMSDEQKQKMRMHYQKT 148

Query: 220 SDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFG 279
                       L    +            S                             
Sbjct: 149 FVDYDPREDFSDLIKDCINSDPQQKSIKKSSRI--------------------------- 181

Query: 280 LRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWN 339
                 I   SN     +   +  LT LR   +  + F +       +  + E+      
Sbjct: 182 TLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQ---- 236

Query: 340 SLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLS---LIDLSQDFS 396
             Q     +  +NL  +  +++     L  K+PT    L ++  ++++    I   Q   
Sbjct: 237 --QYKTEDLKWDNLKDLTDVEVYNCPNLT-KLPTFLKALPEMQLINVACNRGISGEQLKD 293

Query: 397 QVLDTFSSCGAYALESLDLSICQI-SGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGEL 455
                  +     ++ + +    + +  +   L + K L  LE  +N L G   PA G  
Sbjct: 294 DWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG-KLPAFGSE 352

Query: 456 SSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGN 515
             L  L+L+ N +        G    +E L  ++NKL    +     +++ ++    S N
Sbjct: 353 IKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYN 412

Query: 516 SL-------ILKFNPNWVPPFQLETLQLRSCHL 541
            +           +P       + ++ L +  +
Sbjct: 413 EIGSVDGKNFDPLDPTPFKGINVSSINLSNNQI 445

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 99.3 bits (248), Expect = 5e-22
 Identities = 41/229 (17%), Positives = 80/229 (34%), Gaps = 16/229 (6%)

Query: 125 LKHLIHLDLSGNDFEGIQ------IPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQ 178
           +  +  +D S N+   +       +        N+  +NLS  + +          S L 
Sbjct: 401 VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLS 460

Query: 179 YLDLSGTFLSN--YDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLK 236
            ++L G  L+    +   D        Y+L  +DL    L+K SD    T  LP L  + 
Sbjct: 461 SINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATT-LPYLVGID 519

Query: 237 LTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSW---VFGLRNLVFIDLSSNQF 293
           L+      FP     N S+LK   +              W   +    +L  + + SN  
Sbjct: 520 LSYNSFSKFPTQPL-NSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578

Query: 294 QGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQ 342
           +  +   +    ++  LD++ N   S    ++  + +     + ++  Q
Sbjct: 579 RK-VNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  174 bits (442), Expect = 2e-47
 Identities = 101/441 (22%), Positives = 156/441 (35%), Gaps = 33/441 (7%)

Query: 113 KLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLG 172
            L    N  +  LK L  L+++ N  +  ++P+Y  +L NL +L+LS  K   +    L 
Sbjct: 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 170

Query: 173 NLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSL 232
            L  +  L+LS   LS   ++         +  L  L L   N    +        L  L
Sbjct: 171 VLHQMPLLNLSLD-LSLNPMNFIQPGAFKEIR-LHKLTLRN-NFDSLNVMKTCIQGLAGL 227

Query: 233 KVLKLTKCQLCHFPPLLSANFSSLKAL------HLAINNFDNSLFQYGSWVFGLRNLVFI 286
           +V +L   +  +   L   + S+L+ L         +   D  L         L N+   
Sbjct: 228 EVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSF 287

Query: 287 DLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTIS 346
            L S   +             +HL+L    F       L     L F S   N      S
Sbjct: 288 SLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTS---NKGGNAFS 342

Query: 347 SVGLENLTSIETLDLSGNS-KLGGKIPTSFARLCKLTSVDLS---LIDLSQDFSQVLDTF 402
            V L +L   E LDLS N     G    S      L  +DLS   +I +S +F       
Sbjct: 343 EVDLPSL---EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF------- 392

Query: 403 SSCGAYALESLDLSICQISGHLTNQLLQ-FKSLHTLELGHNSLFGPLPPALGELSSLKKL 461
              G   LE LD     +       +    ++L  L++ H             LSSL+ L
Sbjct: 393 --LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 450

Query: 462 DLSNNMLNGFI-PLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILK 520
            ++ N       P    +L +L +LDLS  +L   LS   F +L+ L   + S N+    
Sbjct: 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSL 509

Query: 521 FNPNWVPPFQLETLQLRSCHL 541
               +     L+ L     H+
Sbjct: 510 DTFPYKCLNSLQVLDYSLNHI 530

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  168 bits (427), Expect = 1e-45
 Identities = 87/446 (19%), Positives = 153/446 (34%), Gaps = 32/446 (7%)

Query: 113 KLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLG 172
            L    + S      L  LDLS  + + I       SL +L  L L+G     +      
Sbjct: 39  PLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFS 97

Query: 173 NLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSL 232
            LS+LQ L    T L++  L    +  L     L+ L+++   +         +N L +L
Sbjct: 98  GLSSLQKLVAVETNLAS--LENFPIGHLK---TLKELNVAHNLIQSFKLPEYFSN-LTNL 151

Query: 233 KVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQ 292
           + L L+  ++             +  L+L+++   N +       F    L  + L +N 
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNF 211

Query: 293 FQGQIP----IGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSV 348
               +      GL  L   R +   F    +      S    L  L++    L      +
Sbjct: 212 DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYL 271

Query: 349 G-----LENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFS 403
                    LT++ +  L   +    +    F+       ++L      Q        F 
Sbjct: 272 DDIIDLFNCLTNVSSFSLVSVT---IERVKDFSYNFGWQHLELVNCKFGQ--------FP 320

Query: 404 SCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSL--FGPLPPALGELSSLKKL 461
           +    +L+ L  +  +     +   L   SL  L+L  N L   G    +    +SLK L
Sbjct: 321 TLKLKSLKRLTFTSNKGGNAFSEVDL--PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL 378

Query: 462 DLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKF 521
           DLS N +   +  +   L  LE+LD  ++ L        F++L  L +   S     + F
Sbjct: 379 DLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 437

Query: 522 NPNWVPPFQLETLQLRSCHLGPHFPS 547
           N  +     LE L++       +F  
Sbjct: 438 NGIFNGLSSLEVLKMAGNSFQENFLP 463

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  164 bits (417), Expect = 3e-44
 Identities = 80/408 (19%), Positives = 136/408 (33%), Gaps = 50/408 (12%)

Query: 117 KVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQ---LGN 173
            + P       L  L L  N      +   +  L  L    L   +F     L+      
Sbjct: 191 FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250

Query: 174 LSNLQYLDLSGTFLSNYDLHVDSL-SWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSL 232
           L  L  L +    L+  D ++D +    + L  +    L  + + +  D+          
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY----NFGW 306

Query: 233 KVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQ 292
           + L+L  C+   FP L   +   L        N  + +         L +L F+DLS N 
Sbjct: 307 QHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV--------DLPSLEFLDLSRNG 358

Query: 293 --FQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGL 350
             F+G         TSL++LDL FN   + +  +L     LE L    ++L+        
Sbjct: 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVF 417

Query: 351 ENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYAL 410
            +L ++  LD+S            F  L  L                             
Sbjct: 418 LSLRNLIYLDISHT-HTRVAFNGIFNGLSSL----------------------------- 447

Query: 411 ESLDLSICQISGHLTNQLLQ-FKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLN 469
           E L ++      +    +    ++L  L+L    L    P A   LSSL+ L++S+N   
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 507

Query: 470 GFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSL 517
                    L+ L+ LD S N +  S  +      + L + + + N  
Sbjct: 508 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 555

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  157 bits (398), Expect = 1e-41
 Identities = 100/433 (23%), Positives = 154/433 (35%), Gaps = 55/433 (12%)

Query: 127 HLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTF 186
              +LDLS N    +       S   L+ L+LS  +   +      +LS+L  L L+G  
Sbjct: 29  STKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 187 LSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFP 246
           + +      +L   SGL  L+ L   + NL+                             
Sbjct: 88  IQSL-----ALGAFSGLSSLQKLVAVETNLAS--------------------------LE 116

Query: 247 PLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTS 306
                +  +LK L++A N   +  F+   +   L NL  +DLSSN+ Q      LR L  
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQS--FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174

Query: 307 LR----HLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLS 362
           +      LDL  N  N   PG   +   L  L++  N     +    ++ L  +E   L 
Sbjct: 175 MPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV 233

Query: 363 GNS-----KLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSI 417
                    L     ++   LC LT  +  L  L      ++D F+      + S  L  
Sbjct: 234 LGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCL--TNVSSFSLVS 291

Query: 418 CQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLG 477
             I                LEL +   FG  P    +L SLK+L  ++N        S  
Sbjct: 292 VTIERVKDFSYN--FGWQHLELVNCK-FGQFPT--LKLKSLKRLTFTSNKGGN--AFSEV 344

Query: 478 KLSHLEYLDLSNNKLNAS-LSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQL 536
            L  LE+LDLS N L+            T L +   S N +I   + N++   QLE L  
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDF 403

Query: 537 RSCHLGPHFPSWL 549
           +  +L       +
Sbjct: 404 QHSNLKQMSEFSV 416

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  126 bits (318), Expect = 5e-31
 Identities = 64/329 (19%), Positives = 104/329 (31%), Gaps = 27/329 (8%)

Query: 210 DLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNF--- 266
              ++N  K  D L       S K L L+   L H       +F  L+ L L+       
Sbjct: 13  QCMELNFYKIPDNLP-----FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI 67

Query: 267 DNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLS 326
           ++  +Q       L +L  + L+ N  Q         L+SL+ L        S     + 
Sbjct: 68  EDGAYQ------SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG 121

Query: 327 KFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDL 386
               L+ L+VA N +Q         NLT++E LDLS N K+     T    L ++  ++L
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNL 180

Query: 387 SLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQ-FKSLHTLELGHNSLF 445
           SL DLS +    +    +     L  L L     S ++    +Q    L    L      
Sbjct: 181 SL-DLSLNPMNFIQ-PGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 238

Query: 446 G---PLPPALGELSSLKKLDLSNNMLN------GFIPLSLGKLSHLEYLDLSNNKLNASL 496
                       L  L  L +    L         I      L+++    L +  +    
Sbjct: 239 NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK 298

Query: 497 SEIHFVNLTKLTWFSASGNSLILKFNPNW 525
              +      L   +            + 
Sbjct: 299 DFSYNFGWQHLELVNCKFGQFPTLKLKSL 327

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  109 bits (275), Expect = 2e-25
 Identities = 63/254 (24%), Positives = 96/254 (37%), Gaps = 34/254 (13%)

Query: 112 SKLGGKVNPSLVDLKHLIHLDLSGNDFEGIQ-IPKYLGSLENLRYLNLSGAKFAGMIPLQ 170
           +   G    S VDL  L  LDLS N         +      +L+YL+LS       +   
Sbjct: 333 TSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSN 391

Query: 171 LGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLP 230
              L  L++LD   + L      +   S    L  L +LD+S  +   A + +   N L 
Sbjct: 392 FLGLEQLEHLDFQHSNLKQ----MSEFSVFLSLRNLIYLDISHTHTRVAFNGIF--NGLS 445

Query: 231 SLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSS 290
           SL+VLK+                           NF   +F        LRNL F+DLS 
Sbjct: 446 SLEVLKMAGNSF--------------------QENFLPDIFT------ELRNLTFLDLSQ 479

Query: 291 NQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGL 350
            Q +   P    +L+SL+ L++  N F S         N L+ L  + N +  +      
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 539

Query: 351 ENLTSIETLDLSGN 364
              +S+  L+L+ N
Sbjct: 540 HFPSSLAFLNLTQN 553

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 65.0 bits (159), Expect = 3e-11
 Identities = 37/200 (18%), Positives = 70/200 (35%), Gaps = 32/200 (16%)

Query: 113 KLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLG 172
                 N     L  L  L ++GN F+   +P     L NL +L+LS  +   + P    
Sbjct: 432 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491

Query: 173 NLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSL 232
           +LS+LQ L++S     + D           L  L+ LD S  ++           +    
Sbjct: 492 SLSSLQVLNMSHNNFFSLD-----TFPYKCLNSLQVLDYSLNHIM----------TSK-- 534

Query: 233 KVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQ 292
                           L    SSL  L+L  N+F  +        + +++   + +   +
Sbjct: 535 -------------KQELQHFPSSLAFLNLTQNDFACTCEHQSFLQW-IKDQRQLLVEVER 580

Query: 293 FQGQIPIGLRNLTSLRHLDL 312
            +   P   + +  +  L++
Sbjct: 581 MECATPSDKQGM-PVLSLNI 599

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  171 bits (435), Expect = 1e-45
 Identities = 62/442 (14%), Positives = 136/442 (30%), Gaps = 64/442 (14%)

Query: 120 PSLVDLKHLIHLDLSGNDFEGI------------------QIPKYLGSLENLRYLNLSGA 161
            ++  L  L  +  + + F                            +L++L  + L   
Sbjct: 442 KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNC 501

Query: 162 KFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWL----SGLYMLEHLDLSQMNLS 217
                +P  L +L  LQ L+++     +        + L         ++   +   NL 
Sbjct: 502 PNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561

Query: 218 KASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDN---SLFQYG 274
           +      +   +  L +L     ++ H           L  L L  N  +          
Sbjct: 562 EFPASASLQK-MVKLGLLDCVHNKVRHLEAF--GTNVKLTDLKLDYNQIEEIPEDFCA-- 616

Query: 275 SWVFGLRNLVFIDLSSNQFQGQIP--IGLRNLTSLRHLDLRFNYFNSTTPGWLSKFND-- 330
                   +  +  S N+ +  IP     +++  +  +D  +N   S         +D  
Sbjct: 617 ----FTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYK 671

Query: 331 ---LEFLSVAWNSLQGTISSVGLENLTSIETLDLSGN------SKLGGKIPTSFARLCKL 381
                 +++++N +Q   + +     + I T+ LS N               ++     L
Sbjct: 672 GINASTVTLSYNEIQKFPTEL-FATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLL 730

Query: 382 TSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQIS------GHLTNQLLQFKSLH 435
           T++DL         + + D F +     L ++D+S    S       + +  L  F   H
Sbjct: 731 TTIDLR----FNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQ-LKAFGIRH 785

Query: 436 TLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNAS 495
             +   N +    P  +    SL +L + +N +   +   L     L  LD+++N    S
Sbjct: 786 QRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKL--TPQLYILDIADNPN-IS 841

Query: 496 LSEIHFVNLTKLTWFSASGNSL 517
           +         +   +    +  
Sbjct: 842 IDVTSVCPYIEAGMYVLLYDKT 863

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  167 bits (424), Expect = 3e-44
 Identities = 69/497 (13%), Positives = 144/497 (28%), Gaps = 69/497 (13%)

Query: 47  KLKQDLIDPSNRLASWNTGDGDCCKWAGVFCSNIT--GHVLQLSLQNPFSYLGGDLREVK 104
           +     I+ +    +WN  + +   W      ++   G V  LSL               
Sbjct: 287 RYYSGTINNTIHSLNWNF-NKELDMWGDQPGVDLDNNGRVTGLSLAG------------- 332

Query: 105 AGSNYERSKLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFA 164
                      G+V  ++  L  L  L    +             L              
Sbjct: 333 -------FGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRM 385

Query: 165 GMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLL 224
               + L     L   DL    ++                    +      ++  S  + 
Sbjct: 386 HYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAI- 444

Query: 225 VTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLV 284
               L  L+++        +    +    ++         N + S          L++L 
Sbjct: 445 --QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQ-YENEELSWSN-------LKDLT 494

Query: 285 FIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTT---------PGWLSKFNDLEFLS 335
            ++L +     Q+P  L +L  L+ L++  N   S                    ++   
Sbjct: 495 DVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFY 554

Query: 336 VAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLS---LIDLS 392
           + +N+L+   +S  L+ +  +  LD   N K+  +   +F    KLT + L    + ++ 
Sbjct: 555 MGYNNLEEFPASASLQKMVKLGLLDCVHN-KV--RHLEAFGTNVKLTDLKLDYNQIEEIP 611

Query: 393 QDFSQVLDTFSSCGAYALESLDLSICQISG-HLTNQLLQFKSLHTLELGHNSLFG----- 446
           +DF    D         +E L  S  ++              + +++  +N +       
Sbjct: 612 EDFCAFTD--------QVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNI 663

Query: 447 PLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKL------NASLSEIH 500
                  +  +   + LS N +  F        S +  + LSNN +      +    + +
Sbjct: 664 SCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGN 723

Query: 501 FVNLTKLTWFSASGNSL 517
           + N   LT      N L
Sbjct: 724 YKNTYLLTTIDLRFNKL 740

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  152 bits (385), Expect = 3e-39
 Identities = 53/410 (12%), Positives = 112/410 (27%), Gaps = 57/410 (13%)

Query: 116 GKVNPSLVDLKHLIHLDLSGNDFEGI--------QIPKYLGSLENLRYLNLSGAKFAGM- 166
            ++   L DL  L  L+++ N             ++     +   ++   +         
Sbjct: 505 TQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFP 564

Query: 167 IPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVT 226
               L  +  L  LD     +         L        L  L L    + +  +     
Sbjct: 565 ASASLQKMVKLGLLDCVHNKVR-------HLEAFGTNVKLTDLKLDYNQIEEIPEDFC-- 615

Query: 227 NSLPSLKVLKLTKCQLCHFPPLLSA-NFSSLKALHLAINNFDNSLFQYGSW--VFGLRNL 283
                ++ L  +  +L + P + +A +   + ++  + N   +           +   N 
Sbjct: 616 AFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINA 675

Query: 284 VFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNS-------TTPGWLSKFNDLEFLSV 336
             + LS N+ Q          + +  + L  N   S          G       L  + +
Sbjct: 676 STVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDL 735

Query: 337 AWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFS 396
            +N L           L  +  +D+S N       PT      +L +  +          
Sbjct: 736 RFNKLTSLSDDFRATTLPYLSNMDVSYN-CFSS-FPTQPLNSSQLKAFGIR--------- 784

Query: 397 QVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELS 456
                            D    +I       +    SL  L++G N +   +   L    
Sbjct: 785 --------------HQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKL--TP 827

Query: 457 SLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTK 506
            L  LD+++N        S+          L  +K    +     + + +
Sbjct: 828 QLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDK-TQDIRGCDALGIER 876

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  145 bits (366), Expect = 9e-37
 Identities = 55/405 (13%), Positives = 116/405 (28%), Gaps = 37/405 (9%)

Query: 140 GIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSW 199
           G Q    L +   +  L+L+G    G +P  +G L+ L+ L       +       S   
Sbjct: 312 GDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSET------VSGRL 365

Query: 200 LSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKAL 259
                +   +   + +  +     +  +    L +  L +  +   P +      S  +L
Sbjct: 366 FGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISL 425

Query: 260 -HLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFN 318
               I N  N +      +  L  L  I  +++ F                 +  +    
Sbjct: 426 KDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNI-----AVDWEDANSDYAKQY 480

Query: 319 STTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARL 378
                  S   DL  + +        +    L +L  +++L+++ N            R 
Sbjct: 481 ENEELSWSNLKDLTDVELYNCPNMTQLPD-FLYDLPELQSLNIACN------------RG 527

Query: 379 CKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLL-QFKSLHTL 437
                +      L+ D               ++   +    +     +  L +   L  L
Sbjct: 528 ISAAQLKADWTRLADDED---------TGPKIQIFYMGYNNLEEFPASASLQKMVKLGLL 578

Query: 438 ELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLS 497
           +  HN +      A G    L  L L  N +             +E L  S+NKL    +
Sbjct: 579 DCVHNKVRHL--EAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPN 636

Query: 498 EIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLG 542
             +  ++  +     S N +  +           + +   +  L 
Sbjct: 637 IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLS 681

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 65.3 bits (159), Expect = 3e-11
 Identities = 18/131 (13%), Positives = 43/131 (32%), Gaps = 2/131 (1%)

Query: 412 SLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGF 471
           + +  +          L     +  L L      G +P A+G+L+ LK L    +     
Sbjct: 303 NFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVS 362

Query: 472 IPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQL 531
             L   +    +  +   +++     ++      +L       ++  +  NP   P  + 
Sbjct: 363 GRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDA--INRNPEMKPIKKD 420

Query: 532 ETLQLRSCHLG 542
             + L+   +G
Sbjct: 421 SRISLKDTQIG 431

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  159 bits (403), Expect = 4e-42
 Identities = 83/433 (19%), Positives = 144/433 (33%), Gaps = 29/433 (6%)

Query: 117 KVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQ------ 170
            +         L  L L GN      +   L +L  L    L   +F     L+      
Sbjct: 195 FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSI 254

Query: 171 LGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLP 230
           +  L ++   +   T+ +++   +     L+ +     + L+ +++    D         
Sbjct: 255 MEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANV---SAMSLAGVSIKYLEDVP----KHF 307

Query: 231 SLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSS 290
             + L + +CQL  FP L   +   LK+L L +N    S          L +L ++DLS 
Sbjct: 308 KWQSLSIIRCQLKQFPTL---DLPFLKSLTLTMNKGSISF-----KKVALPSLSYLDLSR 359

Query: 291 NQFQGQIPIGLRNL--TSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSV 348
           N           +L   SLRHLDL FN              +L+ L    ++L+      
Sbjct: 360 NALSFSGCCSYSDLGTNSLRHLDLSFNGA-IIMSANFMGLEELQHLDFQHSTLKRVTEFS 418

Query: 349 GLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAY 408
              +L  +  LD+S            F  L  L ++ ++       F     +       
Sbjct: 419 AFLSLEKLLYLDISYT-NTKIDFDGIFLGLTSLNTLKMA----GNSFKDNTLSNVFANTT 473

Query: 409 ALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNML 468
            L  LDLS CQ+             L  L + HN+L         +L SL  LD S N +
Sbjct: 474 NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 533

Query: 469 NGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPP 528
                +       L + +L+NN +        F+   K           +    P  +  
Sbjct: 534 ETSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFLVNVEQMTCATPVEMNT 593

Query: 529 FQLETLQLRSCHL 541
             +      +C++
Sbjct: 594 SLVLDFNNSTCYM 606

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  158 bits (402), Expect = 5e-42
 Identities = 90/439 (20%), Positives = 158/439 (35%), Gaps = 31/439 (7%)

Query: 119 NPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQ 178
           + S  +   L  LDLS  + E I   K    L +L  L L+G       P     L++L+
Sbjct: 49  SYSFSNFSELQWLDLSRCEIETI-EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLE 107

Query: 179 YLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLT 238
            L    T L++  L    +  L     L+ L+++   +         +N L +L  + L+
Sbjct: 108 NLVAVETKLAS--LESFPIGQLIT---LKKLNVAHNFIHSCKLPAYFSN-LTNLVHVDLS 161

Query: 239 KCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIP 298
              +                ++L+++   N +       F    L  + L  N     I 
Sbjct: 162 YNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIM 221

Query: 299 -IGLRNLTSLRHLDLRFNYF---NSTTPGWLSKFNDLEFLSVAWNSLQG----TISSVGL 350
              L+NL  L    L    F    +      S    L  +++    L      +   V  
Sbjct: 222 KTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKF 281

Query: 351 ENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYAL 410
             L ++  + L+G S    K      +  K  S+ +    L Q        F +     L
Sbjct: 282 HCLANVSAMSLAGVS---IKYLEDVPKHFKWQSLSIIRCQLKQ--------FPTLDLPFL 330

Query: 411 ESLDLSICQISGHLTNQLLQFKSLHTLELGHNSL--FGPLPPALGELSSLKKLDLSNNML 468
           +SL L++ + S       L   SL  L+L  N+L   G    +    +SL+ LDLS N  
Sbjct: 331 KSLTLTMNKGSISFKKVALP--SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA 388

Query: 469 NGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPP 528
              +  +   L  L++LD  ++ L        F++L KL +   S  +  + F+  ++  
Sbjct: 389 II-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGL 447

Query: 529 FQLETLQLRSCHLGPHFPS 547
             L TL++       +  S
Sbjct: 448 TSLNTLKMAGNSFKDNTLS 466

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  151 bits (384), Expect = 1e-39
 Identities = 79/429 (18%), Positives = 142/429 (33%), Gaps = 50/429 (11%)

Query: 121 SLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNL--- 177
            +  L  L  L+++ N     ++P Y  +L NL +++LS      +    L  L      
Sbjct: 123 PIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQV 182

Query: 178 -QYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLK 236
              LD+S   +    +   +   +     L  L L     S       + N L  L V +
Sbjct: 183 NLSLDMSLNPIDF--IQDQAFQGIK----LHELTLRGNFNSSNIMKTCLQN-LAGLHVHR 235

Query: 237 LTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVF--IDLSSNQFQ 294
           L   +      L                 F+ S+ +      GL ++      L+     
Sbjct: 236 LILGEFKDERNL---------------EIFEPSIME------GLCDVTIDEFRLTYTNDF 274

Query: 295 GQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLT 354
               +    L ++  + L            + K    + LS+        +      +L 
Sbjct: 275 SDDIVKFHCLANVSAMSLAGVSIKYLED--VPKHFKWQSLSIIRCQ----LKQFPTLDLP 328

Query: 355 SIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLD 414
            +++L L+ N    G I      L  L+ +DLS   LS        ++S  G  +L  LD
Sbjct: 329 FLKSLTLTMNK---GSISFKKVALPSLSYLDLSRNALSFSGC---CSYSDLGTNSLRHLD 382

Query: 415 LSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPP-ALGELSSLKKLDLSNNMLNGFIP 473
           LS       ++   +  + L  L+  H++L       A   L  L  LD+S         
Sbjct: 383 LSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD 441

Query: 474 LSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPF-QLE 532
                L+ L  L ++ N    +     F N T LT+   S    + + +        +L+
Sbjct: 442 GIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ-LEQISWGVFDTLHRLQ 500

Query: 533 TLQLRSCHL 541
            L +   +L
Sbjct: 501 LLNMSHNNL 509

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  141 bits (358), Expect = 3e-36
 Identities = 77/403 (19%), Positives = 142/403 (35%), Gaps = 36/403 (8%)

Query: 127 HLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTF 186
              ++DLS N  + ++      +   L++L+LS  +   +       L +L  L L+G  
Sbjct: 33  STKNIDLSFNPLKILK-SYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91

Query: 187 LSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFP 246
           + ++     S    SGL  LE+L   +  L+    + +    L +LK L +    +    
Sbjct: 92  IQSF-----SPGSFSGLTSLENLVAVETKLASLESFPI--GQLITLKKLNVAHNFIHSCK 144

Query: 247 -PLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLR-NLVFIDLSSNQFQGQIPIGLRNL 304
            P   +N ++L  + L+ N           ++       + +D+S N     I       
Sbjct: 145 LPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQG 203

Query: 305 TSLRHLDLRFNYFNST-TPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLT-------SI 356
             L  L LR N+ +S      L     L    +     +   +    E          +I
Sbjct: 204 IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTI 263

Query: 357 ETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLS 416
           +   L+  +         F  L  ++++ L+ + +                +  +SL + 
Sbjct: 264 DEFRLTYTNDF-SDDIVKFHCLANVSAMSLAGVSIKY-------LEDVPKHFKWQSLSII 315

Query: 417 ICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIP--L 474
            CQ+        L    L +L L  N     +      L SL  LDLS N L+       
Sbjct: 316 RCQLK---QFPTLDLPFLKSLTLTMNKG--SISFKKVALPSLSYLDLSRNALSFSGCCSY 370

Query: 475 SLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSL 517
           S    + L +LDLS N     +   +F+ L +L       ++L
Sbjct: 371 SDLGTNSLRHLDLSFNGA--IIMSANFMGLEELQHLDFQHSTL 411

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  139 bits (351), Expect = 3e-35
 Identities = 93/436 (21%), Positives = 157/436 (36%), Gaps = 36/436 (8%)

Query: 116 GKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLS 175
           G +NP +  + ++             ++P  + S  + + ++LS      +      N S
Sbjct: 2   GSLNPCIEVVPNI-TYQCMDQKLS--KVPDDIPS--STKNIDLSFNPLKILKSYSFSNFS 56

Query: 176 NLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVL 235
            LQ+LDLS   +    +   +     GL+ L +L L+   +   S      + L SL+ L
Sbjct: 57  ELQWLDLSRCEIE--TIEDKA---WHGLHHLSNLILTGNPIQSFSPGSF--SGLTSLENL 109

Query: 236 KLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQG 295
              + +L            +LK L++A N       +  ++   L NLV +DLS N  Q 
Sbjct: 110 VAVETKLASLESFPIGQLITLKKLNVAHNFI--HSCKLPAYFSNLTNLVHVDLSYNYIQT 167

Query: 296 QIPIGLRNLTSLR----HLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLE 351
                L+ L         LD+  N  +            L  L++  N     I    L+
Sbjct: 168 ITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK-LHELTLRGNFNSSNIMKTCLQ 226

Query: 352 NLTSIETLDLSGNS-----KLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCG 406
           NL  +    L          L    P+    LC +T  +  L   + DFS  +  F    
Sbjct: 227 NLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRL-TYTNDFSDDIVKFHCLA 285

Query: 407 AYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNN 466
              + ++ L+   I       + +     +L +    L    P    +L  LK L L+ N
Sbjct: 286 --NVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQL-KQFPTL--DLPFLKSLTLTMN 338

Query: 467 MLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEI-HFVNLTKLTWFSASGNSLILKFNPNW 525
             +  I      L  L YLDLS N L+ S       +    L     S N  I+  + N+
Sbjct: 339 KGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANF 395

Query: 526 VPPFQLETLQLRSCHL 541
           +   +L+ L  +   L
Sbjct: 396 MGLEELQHLDFQHSTL 411

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 51.6 bits (124), Expect = 5e-07
 Identities = 19/99 (19%), Positives = 32/99 (32%), Gaps = 6/99 (6%)

Query: 114 LGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGN 173
               ++    +  +L  LDLS    E I       +L  L+ LN+S      +       
Sbjct: 461 KDNTLSNVFANTTNLTFLDLSKCQLEQI-SWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQ 519

Query: 174 LSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLS 212
           L +L  LD S   +           +      L   +L+
Sbjct: 520 LYSLSTLDCSFNRIET--SKGILQHFPKS---LAFFNLT 553

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  151 bits (385), Expect = 6e-42
 Identities = 79/356 (22%), Positives = 128/356 (35%), Gaps = 87/356 (24%)

Query: 37  CIDSEREALLKLKQDLIDPSNRLASWNTGDGDC-CKWAGVFCSNIT--GHVLQLSLQNPF 93
           C   +++ALL++K+DL +P+  L+SW      C   W GV C   T    V  L L    
Sbjct: 3   CNPQDKQALLQIKKDLGNPTT-LSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSG-- 59

Query: 94  SYLGGDLREVKAGSNYERSKLGGKVNPSLVDLKHLIHLDLSG-NDFEGIQIPKYLGSLEN 152
             L                     +  SL +L +L  L + G N+  G  IP  +  L  
Sbjct: 60  LNLPKP----------------YPIPSSLANLPYLNFLYIGGINNLVG-PIPPAIAKLTQ 102

Query: 153 LRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSL-SWLSGLYMLEHLDL 211
           L YL ++    +G IP  L  +  L  LD S   LS       +L   +S L  L  +  
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS------GTLPPSISSLPNLVGITF 156

Query: 212 SQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLF 271
               +         + ++P                     ++ S   L  ++        
Sbjct: 157 DGNRI---------SGAIPD--------------------SYGSFSKLFTSMT------- 180

Query: 272 QYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDL 331
                           +S N+  G+IP    NL +L  +DL  N              + 
Sbjct: 181 ----------------ISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNT 223

Query: 332 EFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLS 387
           + + +A NSL   +  VG     ++  LDL  N ++ G +P    +L  L S+++S
Sbjct: 224 QKIHLAKNSLAFDLGKVG--LSKNLNGLDLRNN-RIYGTLPQGLTQLKFLHSLNVS 276

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  145 bits (368), Expect = 2e-39
 Identities = 70/297 (23%), Positives = 113/297 (38%), Gaps = 46/297 (15%)

Query: 226 TNSLPSLKVLKLTKCQL---CHFPPLLSANFSSLKALHLA-INNFDNSLFQYGSWVFGLR 281
                 +  L L+   L      P  L+ N   L  L++  INN    +      +  L 
Sbjct: 46  DTQTYRVNNLDLSGLNLPKPYPIPSSLA-NLPYLNFLYIGGINNLVGPI---PPAIAKLT 101

Query: 282 NLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSL 341
            L ++ ++     G IP  L  + +L  LD  +N  + T P  +S   +L  ++   N +
Sbjct: 102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI 161

Query: 342 QGTI-SSVGLENLTS-IETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVL 399
            G I  S G  + +    ++ +S N  L GKIP +FA L                     
Sbjct: 162 SGAIPDSYG--SFSKLFTSMTISRNR-LTGKIPPTFANL--------------------- 197

Query: 400 DTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLK 459
                     L  +DLS   + G  +      K+   + L  NSL   L   +G   +L 
Sbjct: 198 ---------NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLN 247

Query: 460 KLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNS 516
            LDL NN + G +P  L +L  L  L++S N L   + +    NL +    + + N 
Sbjct: 248 GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG--NLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  140 bits (355), Expect = 1e-37
 Identities = 60/268 (22%), Positives = 105/268 (39%), Gaps = 37/268 (13%)

Query: 252 NFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSS-NQFQGQIPIGLRNLTSLRHL 310
               +  L L+  N         S +  L  L F+ +   N   G IP  +  LT L +L
Sbjct: 48  QTYRVNNLDLSGLNLPKPY-PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 311 DLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTI-SSVGLENLTSIETLDLSGNSKLGG 369
            +     +   P +LS+   L  L  ++N+L GT+  S+   +L ++  +   GN ++ G
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS--SLPNLVGITFDGN-RISG 163

Query: 370 KIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLL 429
            IP S+    KL                              S+ +S  +++G +     
Sbjct: 164 AIPDSYGSFSKL----------------------------FTSMTISRNRLTGKIPPTFA 195

Query: 430 QFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSN 489
              +L  ++L  N L G      G   + +K+ L+ N L   +   +G   +L  LDL N
Sbjct: 196 NL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRN 253

Query: 490 NKLNASLSEIHFVNLTKLTWFSASGNSL 517
           N++  +L +     L  L   + S N+L
Sbjct: 254 NRIYGTLPQ-GLTQLKFLHSLNVSFNNL 280

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 60.6 bits (148), Expect = 3e-10
 Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 9/92 (9%)

Query: 127 HLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTF 186
           +L  +DLS N  EG       GS +N + ++L+    A  +  ++G   NL  LDL    
Sbjct: 198 NLAFVDLSRNMLEG-DASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNR 255

Query: 187 LSNYDLHVDSL-SWLSGLYMLEHLDLSQMNLS 217
           +        +L   L+ L  L  L++S  NL 
Sbjct: 256 IY------GTLPQGLTQLKFLHSLNVSFNNLC 281

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 59.5 bits (145), Expect = 7e-10
 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 120 PSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQY 179
             +   K+L  LDL  N   G  +P+ L  L+ L  LN+S     G IP Q GNL     
Sbjct: 238 GKVGLSKNLNGLDLRNNRIYG-TLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDV 295

Query: 180 LDLSG 184
              + 
Sbjct: 296 SAYAN 300

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  153 bits (388), Expect = 1e-39
 Identities = 100/469 (21%), Positives = 161/469 (34%), Gaps = 50/469 (10%)

Query: 121 SLVDLKHLIHLDLSGNDFEGIQI-PKYLGSLENLRYLNLSGAKFAGM-IPLQLGNLSNLQ 178
           +   L HL  L L         +   Y  +L+ L  L+LS  +   + +    G L++L+
Sbjct: 92  AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLK 151

Query: 179 YLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSK--ASDWLLVTNSLP--SLKV 234
            +D S   +    +    L  L G   L    L+  +L    + DW    N      L++
Sbjct: 152 SIDFSSNQIFL--VCEHELEPLQGKT-LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEI 208

Query: 235 LKLTKCQLCHFPPLLSANF------------SSLKALHLAINN---FDNSLFQYGSWVFG 279
           L ++            +N               +       +N    D + F        
Sbjct: 209 LDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFA----GLA 264

Query: 280 LRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWN 339
             ++  +DLS              L  L+ L+L +N  N          ++L+ L++++N
Sbjct: 265 RSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN 324

Query: 340 SLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLS--QDFSQ 397
            L   + S     L  +  +DL  N  +      +F  L KL ++DL    L+       
Sbjct: 325 LLG-ELYSSNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPS 382

Query: 398 VLDTFSSC--------GAYALESLDLSICQISG-HLTNQLLQFKSLHTLELGHNSL-FGP 447
           + D F S                + LS  ++    +   LL+   L  L L  N      
Sbjct: 383 IPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCS 442

Query: 448 LPPALGELSSLKKLDLSNNMLN-----GFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFV 502
                 E  SL++L L  NML               LSHL+ L L++N LN SL    F 
Sbjct: 443 GDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN-SLPPGVFS 501

Query: 503 NLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLGPHFPSWLHS 551
           +LT L   S + N   L    +   P  LE L +    L    P    S
Sbjct: 502 HLTALRGLSLNSNR--LTVLSHNDLPANLEILDISRNQLLAPNPDVFVS 548

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  144 bits (365), Expect = 1e-36
 Identities = 97/464 (20%), Positives = 158/464 (34%), Gaps = 55/464 (11%)

Query: 117 KVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLE--NLRYLNLSGAKFAGMIPLQLGNL 174
            ++PS   L  L  +D S N    +     L  L+   L + +L+       + +  G  
Sbjct: 139 YLHPSFGKLNSLKSIDFSSNQIFLVC-EHELEPLQGKTLSFFSLAANSLYSRVSVDWGKC 197

Query: 175 SN------LQYLDLSGTFLS-------NYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASD 221
            N      L+ LD+SG   +       +  +       L   + +        N+     
Sbjct: 198 MNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQ 257

Query: 222 WLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLA---INNFDNSLFQYGSWVF 278
                 +  S++ L L+   +      +      LK L+LA   IN   +  F       
Sbjct: 258 NTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFY------ 311

Query: 279 GLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAW 338
           GL NL  ++LS N            L  + ++DL+ N+              L+ L +  
Sbjct: 312 GLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRD 371

Query: 339 NSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQV 398
           N+L        +  + SI  + LSGN     K+ T          + LS   L      +
Sbjct: 372 NALT------TIHFIPSIPDIFLSGN-----KLVTLPKINLTANLIHLSENRL----ENL 416

Query: 399 LDTFSSCGAYALESLDLSICQISGHLTNQLLQ-FKSLHTLELGHNSL-----FGPLPPAL 452
              +       L+ L L+  + S    +Q      SL  L LG N L             
Sbjct: 417 DILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVF 476

Query: 453 GELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSA 512
             LS L+ L L++N LN   P     L+ L  L L++N+L          NL  L     
Sbjct: 477 EGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEIL---DI 533

Query: 513 SGNSLILKFNPNWVPPFQLETLQ----LRSCHLGPHFPSWLHSQ 552
           S N  +L  NP+      +  +     +  C L   F +WL+  
Sbjct: 534 SRNQ-LLAPNPDVFVSLSVLDITHNKFICECELST-FINWLNHT 575

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  141 bits (357), Expect = 1e-35
 Identities = 87/414 (21%), Positives = 141/414 (34%), Gaps = 39/414 (9%)

Query: 124 DLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQ-LGNLSNLQYLDL 182
            L     L LS N    +        LE L+ L L        I  +   NL NL+ LDL
Sbjct: 22  VLNTTERLLLSFNYIRTVT-ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL 80

Query: 183 SGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQL 242
             + +    LH D      GL+ L  L L    LS A        +L +L  L L+K Q+
Sbjct: 81  GSSKIYF--LHPD---AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQI 135

Query: 243 CHFPPLLS-ANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGL 301
                  S    +SLK++  + N                + L F  L++N    ++ +  
Sbjct: 136 RSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP-LQGKTLSFFSLAANSLYSRVSVDW 194

Query: 302 RNL------TSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTS 355
                      L  LD+  N +     G               N++  +  +  L     
Sbjct: 195 GKCMNPFRNMVLEILDVSGNGWTVDITGNF------------SNAISKS-QAFSLILAHH 241

Query: 356 IETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDL 415
           I       +  +      +FA L + +   +  +DLS  F   L++        L+ L+L
Sbjct: 242 IMGAGFGFH-NIKDPDQNTFAGLARSS---VRHLDLSHGFVFSLNSRVFETLKDLKVLNL 297

Query: 416 SICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLS 475
           +  +I+           +L  L L +N L          L  +  +DL  N +      +
Sbjct: 298 AYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQT 357

Query: 476 LGKLSHLEYLDLSNNKLNA-----SLSEIH--FVNLTKLTWFSASGNSLILKFN 522
              L  L+ LDL +N L       S+ +I      L  L   + + N + L  N
Sbjct: 358 FKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSEN 411

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  138 bits (348), Expect = 2e-34
 Identities = 82/391 (20%), Positives = 144/391 (36%), Gaps = 39/391 (9%)

Query: 146 YLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYM 205
           + G +   R+ NL+       +P     L+  + L LS  ++    +   S      L  
Sbjct: 4   FDGRIAFYRFCNLTQ------VP---QVLNTTERLLLSFNYIRT--VTASSFP---FLEQ 49

Query: 206 LEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINN 265
           L+ L+L     +  +       +LP+L++L L   ++    P        L  L L    
Sbjct: 50  LQLLELGS-QYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCG 108

Query: 266 FDNSLFQYGSWVFGLRNLVFIDLSSNQFQG-QIPIGLRNLTSLRHLDLRFNYFNSTTPGW 324
             +++ + G +   L+ L  +DLS NQ +   +      L SL+ +D   N         
Sbjct: 109 LSDAVLKDGYFR-NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE 167

Query: 325 LS--KFNDLEFLSVAWNSLQGTISSVGLENL-----TSIETLDLSGN-----------SK 366
           L   +   L F S+A NSL   +S    + +       +E LD+SGN           + 
Sbjct: 168 LEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNA 227

Query: 367 LGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTN 426
           +      S      +        ++        +TF+     ++  LDLS   +    + 
Sbjct: 228 ISKSQAFSLILAHHIMGAGFGFHNIKDPDQ---NTFAGLARSSVRHLDLSHGFVFSLNSR 284

Query: 427 QLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLD 486
                K L  L L +N +      A   L +L+ L+LS N+L      +   L  + Y+D
Sbjct: 285 VFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYID 344

Query: 487 LSNNKLNASLSEIHFVNLTKLTWFSASGNSL 517
           L  N +   + +  F  L KL       N+L
Sbjct: 345 LQKNHIA-IIQDQTFKFLEKLQTLDLRDNAL 374

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  128 bits (324), Expect = 2e-31
 Identities = 80/446 (17%), Positives = 145/446 (32%), Gaps = 38/446 (8%)

Query: 120 PSLVDLKHLIHLDLSGNDFEGIQI-----------PKYLGSLENLRYLNLSGAKFAGMIP 168
            +      L  LD+SGN +                   L    ++               
Sbjct: 198 MNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQ 257

Query: 169 LQLGNL--SNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVT 226
                L  S++++LDLS  F+ +      +      L  L+ L+L+   ++K +D     
Sbjct: 258 NTFAGLARSSVRHLDLSHGFVFS-----LNSRVFETLKDLKVLNLAYNKINKIADEAF-- 310

Query: 227 NSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFI 286
             L +L+VL L+   L             +  + L  N+   ++ Q  ++   L  L  +
Sbjct: 311 YGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHI--AIIQDQTF-KFLEKLQTL 367

Query: 287 DLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTIS 346
           DL  N         +  + S+  + L  N   +     L+       + ++ N L+    
Sbjct: 368 DLRDNALTT-----IHFIPSIPDIFLSGNKLVTLPKINLT----ANLIHLSENRLENLDI 418

Query: 347 SVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCG 406
              L  +  ++ L L+ N         + +    L  + L    L   +   L      G
Sbjct: 419 LYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEG 478

Query: 407 AYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNN 466
              L+ L L+   ++           +L  L L  N L       L   ++L+ LD+S N
Sbjct: 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEILDISRN 536

Query: 467 MLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILK-FNPNW 525
            L    P        L  LD+++NK         F+N    T  + +G    +    P+ 
Sbjct: 537 QLLAPNP---DVFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDS 593

Query: 526 VPPFQLETLQLRSCHLGPHFPSWLHS 551
                L +L    C       S   S
Sbjct: 594 FSGVSLFSLSTEGCDEEEVLKSLKFS 619

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 66.4 bits (162), Expect = 1e-11
 Identities = 44/201 (21%), Positives = 66/201 (32%), Gaps = 18/201 (8%)

Query: 117 KVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQL----- 171
            +   L+ + HL  L L+ N F      +      +L  L L           +L     
Sbjct: 417 DILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVF 476

Query: 172 GNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPS 231
             LS+LQ L L+  +L++    V      S L  L  L L+   L+  S   L      +
Sbjct: 477 EGLSHLQVLYLNHNYLNSLPPGV-----FSHLTALRGLSLNSNRLTVLSHNDL----PAN 527

Query: 232 LKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSN 291
           L++L +++ QL    P     F SL  L +  N F           +     V I     
Sbjct: 528 LEILDISRNQLLAPNP---DVFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPA 584

Query: 292 QFQGQIPIGLRNLTSLRHLDL 312
                 P       SL  L  
Sbjct: 585 DIYCVYPDSFSG-VSLFSLST 604

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  146 bits (370), Expect = 2e-38
 Identities = 90/398 (22%), Positives = 164/398 (41%), Gaps = 50/398 (12%)

Query: 120 PSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQY 179
            S  DL  +  L        GI+    +  L NL  +N S  +   + P  L NL+ L  
Sbjct: 40  VSQTDLDQVTTLQADRL---GIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVD 94

Query: 180 LDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTK 239
           + ++   +++       ++ L+ L  L  L L    ++          +L +L  L+L+ 
Sbjct: 95  ILMNNNQIAD-------ITPLANLTNLTGLTLFNNQITDIDP----LKNLTNLNRLELSS 143

Query: 240 CQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPI 299
             +     L  +  +SL+ L       D            L  L  +D+SSN+       
Sbjct: 144 NTISDISAL--SGLTSLQQLSFGNQVTDLKPLA------NLTTLERLDISSNKVSD--IS 193

Query: 300 GLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETL 359
            L  LT+L  L    N  +  TP  L    +L+ LS+  N L+  I +  L +LT++  L
Sbjct: 194 VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-IGT--LASLTNLTDL 248

Query: 360 DLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQ 419
           DL+ N ++    P   + L KLT + L         +Q+ +     G  AL +L+L+  Q
Sbjct: 249 DLANN-QISNLAP--LSGLTKLTELKLG-------ANQISNISPLAGLTALTNLELNENQ 298

Query: 420 ISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKL 479
           +     + +   K+L  L L  N++    P  +  L+ L++L   NN ++      L  L
Sbjct: 299 LED--ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSS--LANL 352

Query: 480 SHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSL 517
           +++ +L   +N+++         NLT++T    +  + 
Sbjct: 353 TNINWLSAGHNQIS---DLTPLANLTRITQLGLNDQAW 387

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  131 bits (331), Expect = 3e-33
 Identities = 89/400 (22%), Positives = 160/400 (40%), Gaps = 48/400 (12%)

Query: 120 PSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQY 179
             +  L +L  ++ S N    I     L +L  L  + ++  + A + P  L NL+NL  
Sbjct: 62  DGVEYLNNLTQINFSNNQLTDI---TPLKNLTKLVDILMNNNQIADITP--LANLTNLTG 116

Query: 180 LDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTK 239
           L L    +++       +  L  L  L  L+LS   +S  S      + L SL+ L    
Sbjct: 117 LTLFNNQITD-------IDPLKNLTNLNRLELSSNTISDISAL----SGLTSLQQLSF-G 164

Query: 240 CQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPI 299
            Q+    PL  AN ++L+ L ++ N   +      S +  L NL  +  ++NQ     P+
Sbjct: 165 NQVTDLKPL--ANLTTLERLDISSNKVSDI-----SVLAKLTNLESLIATNNQISDITPL 217

Query: 300 GLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETL 359
           G   LT+L  L L  N         L+   +L  L +A N +        L  LT +  L
Sbjct: 218 G--ILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLA---PLSGLTKLTEL 270

Query: 360 DLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQ 419
            L  N     +I ++ + L  LT+  L+ ++L+++  + +   S+     L  L L    
Sbjct: 271 KLGAN-----QI-SNISPLAGLTA--LTNLELNENQLEDISPISNLK--NLTYLTLYFNN 320

Query: 420 ISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKL 479
           IS    + +     L  L   +N +      +L  L+++  L   +N ++   P  L  L
Sbjct: 321 ISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANL 374

Query: 480 SHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLIL 519
           + +  L L++     +    +  N++          +LI 
Sbjct: 375 TRITQLGLNDQAWT-NAPVNYKANVSIPNTVKNVTGALIA 413

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  128 bits (325), Expect = 2e-32
 Identities = 89/398 (22%), Positives = 157/398 (39%), Gaps = 48/398 (12%)

Query: 120 PSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQY 179
             L +L  L+ + ++ N    I     L +L NL  L L   +   + PL   NL+NL  
Sbjct: 84  TPLKNLTKLVDILMNNNQIADIT---PLANLTNLTGLTLFNNQITDIDPL--KNLTNLNR 138

Query: 180 LDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTK 239
           L+LS   +S+       +S LSGL  L+ L      ++     L    +L +L+ L ++ 
Sbjct: 139 LELSSNTISD-------ISALSGLTSLQQLSFG-NQVTD----LKPLANLTTLERLDISS 186

Query: 240 CQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPI 299
            ++     L  A  ++L++L    N   +      + +  L NL  + L+ NQ +     
Sbjct: 187 NKVSDISVL--AKLTNLESLIATNNQISDI-----TPLGILTNLDELSLNGNQLKD--IG 237

Query: 300 GLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETL 359
            L +LT+L  LDL  N  ++  P  LS    L  L +  N +        L  LT++  L
Sbjct: 238 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS---PLAGLTALTNL 292

Query: 360 DLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQ 419
           +L+ N +L    P   + L  LT + L   ++S      +   SS     L+ L     +
Sbjct: 293 ELNEN-QLEDISP--ISNLKNLTYLTLYFNNISD-----ISPVSSLTK--LQRLFFYNNK 342

Query: 420 ISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKL 479
           +S    + L    +++ L  GHN +       L  L+ + +L L++             +
Sbjct: 343 VSD--VSSLANLTNINWLSAGHNQISDL--TPLANLTRITQLGLNDQAWTNAPVNYKANV 398

Query: 480 SHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSL 517
           S     +   N   A ++     +    T    + N  
Sbjct: 399 S---IPNTVKNVTGALIAPATISDGGSYTEPDITWNLP 433

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 60.0 bits (146), Expect = 8e-10
 Identities = 21/108 (19%), Positives = 42/108 (38%), Gaps = 9/108 (8%)

Query: 410 LESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLN 469
                L    ++  ++        + TL+     +       +  L++L +++ SNN L 
Sbjct: 26  KMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLT 81

Query: 470 GFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSL 517
              PL    L+ L  + ++NN++          NLT LT  +   N +
Sbjct: 82  DITPLK--NLTKLVDILMNNNQIA---DITPLANLTNLTGLTLFNNQI 124

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 58.8 bits (143), Expect = 2e-09
 Identities = 37/197 (18%), Positives = 62/197 (31%), Gaps = 34/197 (17%)

Query: 120 PSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQY 179
             L  L  L +L+L+ N  E I     + +L+NL YL L     + + P+   +L+ LQ 
Sbjct: 281 SPLAGLTALTNLELNENQLEDI---SPISNLKNLTYLTLYFNNISDISPV--SSLTKLQR 335

Query: 180 LDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTK 239
           L      +S+       +S L+ L  +  L      +S  +       +L  +  L L  
Sbjct: 336 LFFYNNKVSD-------VSSLANLTNINWLSAGHNQISDLTPL----ANLTRITQLGLND 384

Query: 240 CQLCHFPPLLSANFSSLKALHLAINNFD------------------NSLFQYGSWVFGLR 281
               + P    AN S    +                          N         +   
Sbjct: 385 QAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYTFS 444

Query: 282 NLVFIDLSSNQFQGQIP 298
             V I   +  F G + 
Sbjct: 445 QPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 13/85 (15%), Positives = 27/85 (31%), Gaps = 6/85 (7%)

Query: 433 SLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKL 492
            L +  +  ++    +      L+   K  L    +   +  +   L  +  L      +
Sbjct: 2   PLGSATITQDTPINQIFT-DTALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGI 58

Query: 493 NASLSEIHFVNLTKLTWFSASGNSL 517
             S+  +    L  LT  + S N L
Sbjct: 59  K-SIDGVE--YLNNLTQINFSNNQL 80

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  142 bits (361), Expect = 3e-38
 Identities = 88/397 (22%), Positives = 154/397 (38%), Gaps = 68/397 (17%)

Query: 121 SLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYL 180
              DL   I   L       +        LE++  L ++G K A +  +    L+NL+YL
Sbjct: 17  PDADLAEGIRAVLQKASVTDV---VTQEELESITKLVVAGEKVASIQGI--EYLTNLEYL 71

Query: 181 DLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKC 240
           +L+G  ++        +S LS L  L +L +    ++  S       +L +L+ L L + 
Sbjct: 72  NLNGNQIT-------DISPLSNLVKLTNLYIGTNKITDISAL----QNLTNLRELYLNED 120

Query: 241 QLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIG 300
            +    PL  AN + + +L+L  N+  + L    S +  +  L ++ ++ ++ +   PI 
Sbjct: 121 NISDISPL--ANLTKMYSLNLGANHNLSDL----SPLSNMTGLNYLTVTESKVKDVTPIA 174

Query: 301 LRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLD 360
             NLT L  L L +N     +P  L+    L + +   N +        + N+T + +L 
Sbjct: 175 --NLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP---VANMTRLNSLK 227

Query: 361 LSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQI 420
           +  N     KI T  + L  L+                           L  L++   QI
Sbjct: 228 IGNN-----KI-TDLSPLANLSQ--------------------------LTWLEIGTNQI 255

Query: 421 SGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLS 480
           S    N +     L  L +G N +       L  LS L  L L+NN L       +G L+
Sbjct: 256 SD--INAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLT 311

Query: 481 HLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSL 517
           +L  L LS N +          +L+K+     +   +
Sbjct: 312 NLTTLFLSQNHIT---DIRPLASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  138 bits (351), Expect = 9e-37
 Identities = 82/373 (21%), Positives = 150/373 (40%), Gaps = 65/373 (17%)

Query: 120 PSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQY 179
            +  +L+ +  L ++G     I   + +  L NL YLNL+G +   + P  L NL  L  
Sbjct: 38  VTQEELESITKLVVAGEKVASI---QGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTN 92

Query: 180 LDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTK 239
           L +    +++       +S L  L  L  L L++ N+S  S       +L  +  L L  
Sbjct: 93  LYIGTNKITD-------ISALQNLTNLRELYLNEDNISDISP----LANLTKMYSLNLGA 141

Query: 240 CQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPI 299
                    LS N + L  L +  +   +      + +  L +L  + L+ NQ +   P+
Sbjct: 142 NHNLSDLSPLS-NMTGLNYLTVTESKVKDV-----TPIANLTDLYSLSLNYNQIEDISPL 195

Query: 300 GLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETL 359
              +LTSL +     N     TP  ++    L  L +  N +        L NL+ +  L
Sbjct: 196 A--SLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLS---PLANLSQLTWL 248

Query: 360 DLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQ 419
           ++  N               +++ ++ ++ DL++                L+ L++   Q
Sbjct: 249 EIGTN---------------QISDIN-AVKDLTK----------------LKMLNVGSNQ 276

Query: 420 ISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKL 479
           IS  ++  L     L++L L +N L       +G L++L  L LS N +    PL+   L
Sbjct: 277 ISD-ISV-LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLA--SL 332

Query: 480 SHLEYLDLSNNKL 492
           S ++  D +N  +
Sbjct: 333 SKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 91.1 bits (227), Expect = 3e-20
 Identities = 49/239 (20%), Positives = 92/239 (38%), Gaps = 28/239 (11%)

Query: 279 GLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAW 338
           G   L  +    NQ          +L       L+             +   +  L VA 
Sbjct: 1   GAATLATLPAPINQI-----FPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAG 53

Query: 339 NSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQV 398
             +  +I   G+E LT++E L+L+GN ++    P   + L KLT++ +    ++      
Sbjct: 54  EKVA-SIQ--GIEYLTNLEYLNLNGN-QITDISP--LSNLVKLTNLYIGTNKITD----- 102

Query: 399 LDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSL 458
           +    +     L  L L+   IS  ++  L     +++L LG N         L  ++ L
Sbjct: 103 ISALQNLT--NLRELYLNEDNIS-DISP-LANLTKMYSLNLGANHNLS-DLSPLSNMTGL 157

Query: 459 KKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSL 517
             L ++ + +    P  +  L+ L  L L+ N++          +LT L +F+A  N +
Sbjct: 158 NYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE---DISPLASLTSLHYFTAYVNQI 211

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 60.6 bits (148), Expect = 4e-10
 Identities = 20/109 (18%), Positives = 41/109 (37%), Gaps = 9/109 (8%)

Query: 410 LESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLN 469
           +  L ++  +++  +   +    +L  L L  N +       L  L  L  L +  N + 
Sbjct: 46  ITKLVVAGEKVA-SIQG-IEYLTNLEYLNLNGNQITDI--SPLSNLVKLTNLYIGTNKIT 101

Query: 470 GFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLI 518
               L    L++L  L L+ + ++         NLTK+   +   N  +
Sbjct: 102 DISALQ--NLTNLRELYLNEDNIS---DISPLANLTKMYSLNLGANHNL 145

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 56.8 bits (138), Expect = 7e-09
 Identities = 22/99 (22%), Positives = 40/99 (40%), Gaps = 10/99 (10%)

Query: 120 PSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQY 179
            ++ DL  L  L++  N    I +   L +L  L  L L+  +        +G L+NL  
Sbjct: 259 NAVKDLTKLKMLNVGSNQISDISV---LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315

Query: 180 LDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSK 218
           L LS   ++        +  L+ L  ++  D +   + K
Sbjct: 316 LFLSQNHIT-------DIRPLASLSKMDSADFANQVIKK 347

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  143 bits (362), Expect = 7e-37
 Identities = 98/424 (23%), Positives = 146/424 (34%), Gaps = 39/424 (9%)

Query: 121 SLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYL 180
            +  LK L  L+++ N  +  ++P+Y  +L NL +L+LS  K   +    L  L  +  L
Sbjct: 119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178

Query: 181 DLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKC 240
           +LS   LS   ++         +  L  L L   N    +        L  L+V +L   
Sbjct: 179 NLSLD-LSLNPMNFIQPGAFKEIR-LHKLTLRN-NFDSLNVMKTCIQGLAGLEVHRLVLG 235

Query: 241 QLCHFPPLLS------ANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQ 294
           +  +   L            +L      +   D  L         L N+    L S   +
Sbjct: 236 EFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE 295

Query: 295 GQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLT 354
                        +HL+L    F       L     L F S   N      S V L +L 
Sbjct: 296 RVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTS---NKGGNAFSEVDLPSL- 349

Query: 355 SIETLDLSGNS-KLGGKIPTSFARLCKLTSVDLS---LIDLSQDFSQV------------ 398
             E LDLS N     G    S      L  +DLS   +I +S +F  +            
Sbjct: 350 --EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN 407

Query: 399 LDTFSSCGAYA----LESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPP-ALG 453
           L   S    +     L  LD+S                SL  L++  NS      P    
Sbjct: 408 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 467

Query: 454 ELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSAS 513
           EL +L  LDLS   L    P +   LS L+ L++++N+L  S+ +  F  LT L      
Sbjct: 468 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLH 526

Query: 514 GNSL 517
            N  
Sbjct: 527 TNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  139 bits (352), Expect = 2e-35
 Identities = 85/440 (19%), Positives = 151/440 (34%), Gaps = 32/440 (7%)

Query: 119 NPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQ 178
           + S      L  LDLS  + + I+      SL +L  L L+G     +       LS+LQ
Sbjct: 45  SYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103

Query: 179 YLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLT 238
            L    T L++  L    +  L     L+ L+++   +         +N L +L+ L L+
Sbjct: 104 KLVAVETNLAS--LENFPIGHLKT---LKELNVAHNLIQSFKLPEYFSN-LTNLEHLDLS 157

Query: 239 KCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIP 298
             ++             +  L+L+++   N +       F    L  + L +N     + 
Sbjct: 158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVM 217

Query: 299 IG-LRNLTSLRHLDLRFNYFNSTTPGW---LSKFNDLEFLSVAWNSLQ-----GTISSVG 349
              ++ L  L    L    F +         S    L  L++    L             
Sbjct: 218 KTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDL 277

Query: 350 LENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYA 409
              LT++ +  L   +    +    F+       ++L      Q        F +    +
Sbjct: 278 FNCLTNVSSFSLVSVT---IERVKDFSYNFGWQHLELVNCKFGQ--------FPTLKLKS 326

Query: 410 LESLDLSICQISGHLTNQLLQFKSLHTLELGHNSL--FGPLPPALGELSSLKKLDLSNNM 467
           L+ L  +  +     +   L   SL  L+L  N L   G    +    +SLK LDLS N 
Sbjct: 327 LKRLTFTSNKGGNAFSEVDL--PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG 384

Query: 468 LNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVP 527
           +      +   L  LE+LD  ++ L        F++L  L +   S     + FN  +  
Sbjct: 385 VITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 443

Query: 528 PFQLETLQLRSCHLGPHFPS 547
              LE L++       +F  
Sbjct: 444 LSSLEVLKMAGNSFQENFLP 463

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  137 bits (347), Expect = 8e-35
 Identities = 82/407 (20%), Positives = 142/407 (34%), Gaps = 29/407 (7%)

Query: 121 SLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGM-IPLQLGNLSNLQY 179
           +   L  L  L     +   ++    +G L+ L+ LN++        +P    NL+NL++
Sbjct: 95  AFSGLSSLQKLVAVETNLASLE-NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 153

Query: 180 LDLSGTFLSNYDLHVDSLSWLSGL-YMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLT 238
           LDLS   + +  ++   L  L  +  +   LDLS   ++              L  L L 
Sbjct: 154 LDLSSNKIQS--IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF---KEIRLHKLTLR 208

Query: 239 KCQL-CHFPPLLSANFSSLKALHLAINNF--DNSLFQYGSWVF-GLRNLVFIDLSSNQ-- 292
                 +         + L+   L +  F  + +L ++      GL NL   +       
Sbjct: 209 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 268

Query: 293 -FQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLE 351
            +   I      LT++    L             S     + L +          ++ L+
Sbjct: 269 YYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF--SYNFGWQHLELVNCKFGQ-FPTLKLK 325

Query: 352 NLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALE 411
           +L     L  + N    G    S   L  L  +DLS   LS    +   + S  G  +L+
Sbjct: 326 SLKR---LTFTSNK---GGNAFSEVDLPSLEFLDLSRNGLS---FKGCCSQSDFGTTSLK 376

Query: 412 SLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFG-PLPPALGELSSLKKLDLSNNMLNG 470
            LDLS   +   +++  L  + L  L+  H++L           L +L  LD+S+     
Sbjct: 377 YLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435

Query: 471 FIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSL 517
                   LS LE L ++ N    +     F  L  LT+   S   L
Sbjct: 436 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  133 bits (337), Expect = 1e-33
 Identities = 96/423 (22%), Positives = 150/423 (35%), Gaps = 34/423 (8%)

Query: 129 IHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLS 188
           I       +F   +IP  L    + + L+LS      +      +   LQ LDLS   + 
Sbjct: 10  ITYQCMELNFY--KIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ 65

Query: 189 NYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPL 248
              +   +      L  L  L L+   +   +      + L SL+ L   +  L      
Sbjct: 66  --TIEDGA---YQSLSHLSTLILTGNPIQSLALGAF--SGLSSLQKLVAVETNLASLENF 118

Query: 249 LSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLR 308
              +  +LK L++A N   +  F+   +   L NL  +DLSSN+ Q      LR L  + 
Sbjct: 119 PIGHLKTLKELNVAHNLIQS--FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176

Query: 309 ----HLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLS-- 362
                LDL  N  N   PG   +   L  L++  N     +    ++ L  +E   L   
Sbjct: 177 LLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG 235

Query: 363 ---GNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQ 419
                  L     ++   LC LT  +  L  L      ++D F+      + S  L    
Sbjct: 236 EFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCL--TNVSSFSLVSVT 293

Query: 420 ISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKL 479
           I                LEL +       P    +L SLK+L  ++N            L
Sbjct: 294 IER--VKDFSYNFGWQHLELVNCKFGQ-FPT--LKLKSLKRLTFTSNKGGNAFSEV--DL 346

Query: 480 SHLEYLDLSNNKLNA-SLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRS 538
             LE+LDLS N L+            T L +   S N +I   + N++   QLE L  + 
Sbjct: 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQH 405

Query: 539 CHL 541
            +L
Sbjct: 406 SNL 408

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  122 bits (309), Expect = 5e-30
 Identities = 79/392 (20%), Positives = 136/392 (34%), Gaps = 50/392 (12%)

Query: 117 KVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAG---MIPLQLGN 173
            + P       L  L L  N      +   +  L  L    L   +F     +       
Sbjct: 191 FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250

Query: 174 LSNLQYLDLSGTFLSNYDLHVDSLS-WLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSL 232
           L  L  L +    L+  D ++D +    + L  +    L  + + +  D+          
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY----NFGW 306

Query: 233 KVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQ 292
           + L+L  C+   FP L      SLK L    N   N+  +       L +L F+DLS N 
Sbjct: 307 QHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNAFSE-----VDLPSLEFLDLSRNG 358

Query: 293 --FQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGL 350
             F+G         TSL++LDL FN   + +  +      LE L    ++L+        
Sbjct: 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF-LGLEQLEHLDFQHSNLKQMSEFSVF 417

Query: 351 ENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYAL 410
            +L ++  LD+S                                 + + +  SS     L
Sbjct: 418 LSLRNLIYLDISHT---------------HTRVAF----------NGIFNGLSS-----L 447

Query: 411 ESLDLSICQISGHLTNQLLQ-FKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLN 469
           E L ++      +    +    ++L  L+L    L    P A   LSSL+ L++++N L 
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK 507

Query: 470 GFIPLSLGKLSHLEYLDLSNNKLNASLSEIHF 501
                   +L+ L+ + L  N  + S   I +
Sbjct: 508 SVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 539

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  137 bits (348), Expect = 4e-35
 Identities = 83/438 (18%), Positives = 157/438 (35%), Gaps = 64/438 (14%)

Query: 122 LVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQ-LGNLSNLQYL 180
              L  L +L+L GN ++ + +     +L NL+ L +   +    I       L++L  L
Sbjct: 94  FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNEL 153

Query: 181 DLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKC 240
           ++    L NY         L  +  + HL L     +   +     + L S++ L+L   
Sbjct: 154 EIKALSLRNYQSQS-----LKSIRDIHHLTLHLSESAFLLEIFA--DILSSVRYLELRDT 206

Query: 241 QLCHFPPL---LSANFSSLKALHLAINNFD----NSLFQYGSWVFGLRNLVFIDLS---- 289
            L  F      +    S +K L    +       N L +   ++  L  + F D +    
Sbjct: 207 NLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGL 266

Query: 290 ----SNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTI 345
                ++      +G     ++R L +   Y         S    ++ ++V  + +   +
Sbjct: 267 GDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LV 325

Query: 346 SSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSC 405
                ++L S+E LDLS N  +  +   + A      S                      
Sbjct: 326 PCSFSQHLKSLEFLDLSEN-LMVEEYLKNSACKGAWPS---------------------- 362

Query: 406 GAYALESLDLSICQIS--GHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDL 463
               L++L LS   +         LL  K+L +L++  N+   P+P +      ++ L+L
Sbjct: 363 ----LQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF-HPMPDSCQWPEKMRFLNL 417

Query: 464 SNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNP 523
           S+  +     +       LE LD+SNN L++       + L +L     S N   LK  P
Sbjct: 418 SSTGIRV---VKTCIPQTLEVLDVSNNNLDSF-----SLFLPRLQELYISRNK--LKTLP 467

Query: 524 NWVPPFQLETLQLRSCHL 541
           +      L  +++    L
Sbjct: 468 DASLFPVLLVMKISRNQL 485

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  128 bits (324), Expect = 6e-32
 Identities = 80/392 (20%), Positives = 137/392 (34%), Gaps = 33/392 (8%)

Query: 131 LDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNY 190
            D     F    IP  L     ++ L+LS  K   +    L   +NLQ L L  + ++  
Sbjct: 10  CDGRSRSFT--SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT- 64

Query: 191 DLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFP-PLL 249
            +  D+   L  L   EHLDLS  +LS  S        L SLK L L            L
Sbjct: 65  -IEGDAFYSLGSL---EHLDLSDNHLSSLSSSWF--GPLSSLKYLNLMGNPYQTLGVTSL 118

Query: 250 SANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRH 309
             N ++L+ L +      + + +      GL +L  +++ +   +      L+++  + H
Sbjct: 119 FPNLTNLQTLRIGNVETFSEIRR--IDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHH 176

Query: 310 LDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQG--TISSVGLENLTSIETLDLSGNSKL 367
           L L  +        +    + + +L +   +L           E  + ++ L   G+   
Sbjct: 177 LTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLT 236

Query: 368 GGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQ 427
                 SF  L KL    L L ++          F  C    L   + S   +   L   
Sbjct: 237 ----DESFNELLKLLRYILELSEVE---------FDDCTLNGLGDFNPSESDVVSELGK- 282

Query: 428 LLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDL 487
            ++  ++  L +    LF  L      L  +K++ + N+ +          L  LE+LDL
Sbjct: 283 -VETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDL 341

Query: 488 SNNKL--NASLSEIHFVNLTKLTWFSASGNSL 517
           S N +      +         L     S N L
Sbjct: 342 SENLMVEEYLKNSACKGAWPSLQTLVLSQNHL 373

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  126 bits (318), Expect = 4e-31
 Identities = 79/396 (19%), Positives = 151/396 (38%), Gaps = 33/396 (8%)

Query: 121 SLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYL 180
               L  L  L++        Q  + L S+ ++ +L L  ++ A ++ +    LS+++YL
Sbjct: 143 DFAGLTSLNELEIKALSLRNYQ-SQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYL 201

Query: 181 DLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKC 240
           +L  T L+ +      +  +S          S +     ++ L +   +  L  ++   C
Sbjct: 202 ELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDC 261

Query: 241 ---QLCHFPPLLSANF---SSLKALHLAINNF-DNSLFQYGSWVF-GLRNLVFIDLSSNQ 292
               L  F P  S        ++ + +   +     LF   S V+  L  +  I + +++
Sbjct: 262 TLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK 321

Query: 293 FQGQIPIG-LRNLTSLRHLDLRFNYFNSTTPGWLSKFND---LEFLSVAWNSLQGTISSV 348
               +P    ++L SL  LDL  N          +       L+ L ++ N L+ ++   
Sbjct: 322 VF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR-SMQKT 379

Query: 349 G--LENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCG 406
           G  L  L ++ +LD+S N      +P S     K+  ++LS   +    + +  T     
Sbjct: 380 GEILLTLKNLTSLDISRN-TFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQT----- 432

Query: 407 AYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNN 466
              LE LD+S   +    +  L     L  L +  N L   LP A      L  + +S N
Sbjct: 433 ---LEVLDVSNNNLD-SFSLFL---PRLQELYISRNKLKT-LPDASL-FPVLLVMKISRN 483

Query: 467 MLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFV 502
            L         +L+ L+ + L  N  + S   I ++
Sbjct: 484 QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 519

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 94.4 bits (235), Expect = 1e-20
 Identities = 60/335 (17%), Positives = 115/335 (34%), Gaps = 36/335 (10%)

Query: 228 SLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFD---NSLFQYGSWVFGLRNLV 284
           S  +  V           P  L    +++K+L L+ N      +   +         NL 
Sbjct: 3   SCDASGVCDGRSRSFTSIPSGL---TAAMKSLDLSFNKITYIGHGDLR------ACANLQ 53

Query: 285 FIDLSSNQFQGQIPIG-LRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQG 343
            + L S++    I      +L SL HLDL  N+ +S +  W    + L++L++  N  Q 
Sbjct: 54  VLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQT 112

Query: 344 TISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFS 403
              +    NLT+++TL +             FA L  L  +++  + L    SQ L +  
Sbjct: 113 LGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIR 172

Query: 404 SCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDL 463
                 +  L L + + +  L        S+  LEL   +L       L        +  
Sbjct: 173 D-----IHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKK 227

Query: 464 SNNMLNGFIPLSLG----------KLSHLEYLDLSNNKL-------NASLSEIHFVNLTK 506
                +     S            +LS +E+ D + N L       +  +SE+  V    
Sbjct: 228 LAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVT 287

Query: 507 LTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHL 541
           +         L    +  +    +++ + + +  +
Sbjct: 288 IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV 322

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  125 bits (315), Expect = 4e-31
 Identities = 71/323 (21%), Positives = 122/323 (37%), Gaps = 25/323 (7%)

Query: 175 SNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKV 234
           +  + LDL    +    L+ D  +       LE L+L++  +S         N+L +L+ 
Sbjct: 32  TETRLLDLGKNRIKT--LNQDEFA---SFPHLEELELNENIVSAVEPGAF--NNLFNLRT 84

Query: 235 LKLTKCQLCHFPPLLSANFSSLKALHLA---INNFDNSLFQYGSWVFGLRNLVFIDLSSN 291
           L L   +L   P  +    S+L  L ++   I    + +FQ       L NL  +++  N
Sbjct: 85  LGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQ------DLYNLKSLEVGDN 138

Query: 292 QFQGQIPIG-LRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGL 350
                I       L SL  L L      S     LS  + L  L +   ++   I     
Sbjct: 139 DLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN-AIRDYSF 196

Query: 351 ENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYAL 410
           + L  ++ L++S    L   +  +      LTS+ ++  +L+      +          L
Sbjct: 197 KRLYRLKVLEISHWPYLD-TMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVY-----L 250

Query: 411 ESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNG 470
             L+LS   IS    + L +   L  ++L    L    P A   L+ L+ L++S N L  
Sbjct: 251 RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTT 310

Query: 471 FIPLSLGKLSHLEYLDLSNNKLN 493
                   + +LE L L +N L 
Sbjct: 311 LEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  109 bits (274), Expect = 8e-26
 Identities = 66/326 (20%), Positives = 115/326 (35%), Gaps = 34/326 (10%)

Query: 127 HLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTF 186
               LDL  N  + +       S  +L  L L+    + + P    NL NL+ L L    
Sbjct: 33  ETRLLDLGKNRIKTLN-QDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91

Query: 187 LSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFP 246
           L    + +      +GL  L  LD+S+  +    D++     L +LK L++    L +  
Sbjct: 92  LKL--IPLGV---FTGLSNLTKLDISENKIVILLDYMF--QDLYNLKSLEVGDNDLVYIS 144

Query: 247 PLLSANFSSLKALHLAINNF---DNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRN 303
               +  +SL+ L L   N                 L  L+ + L             + 
Sbjct: 145 HRAFSGLNSLEQLTLEKCNLTSIPTEALS------HLHGLIVLRLRHLNINAIRDYSFKR 198

Query: 304 LTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSG 363
           L  L+ L++    +  T         +L  LS+   +L   +  + + +L  +  L+LS 
Sbjct: 199 LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSY 257

Query: 364 N--SKLGGKIPTSFARLCKLTSVDLS---LIDLSQDFSQVLDTFSSCGAYALESLDLSIC 418
           N  S +     +    L +L  + L    L  +          F   G   L  L++S  
Sbjct: 258 NPISTIE---GSMLHELLRLQEIQLVGGQLAVVEP------YAFR--GLNYLRVLNVSGN 306

Query: 419 QISGHLTNQLLQFKSLHTLELGHNSL 444
           Q++    +      +L TL L  N L
Sbjct: 307 QLTTLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  109 bits (274), Expect = 9e-26
 Identities = 67/322 (20%), Positives = 107/322 (33%), Gaps = 55/322 (17%)

Query: 230 PSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNF---DNSLFQYGSWVFGLRNLVFI 286
              ++L L K ++        A+F  L+ L L  N     +   F        L NL  +
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFN------NLFNLRTL 85

Query: 287 DLSSNQFQGQIPIG-LRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTI 345
            L SN+ +  IP+G    L++L  LD+  N              +L+ L V  N L   I
Sbjct: 86  GLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YI 143

Query: 346 SSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSC 405
           S      L S+E L L                   LTS+               +     
Sbjct: 144 SHRAFSGLNSLEQLTLEKC---------------NLTSIPT-------------EAL--S 173

Query: 406 GAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSN 465
             + L  L L    I+        +   L  LE+ H      + P      +L  L +++
Sbjct: 174 HLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITH 233

Query: 466 NMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNW 525
             L     L++  L +L +L+LS N + +++       L +L      G  L        
Sbjct: 234 CNLTAVPYLAVRHLVYLRFLNLSYNPI-STIEGSMLHELLRLQEIQLVGGQL------AV 286

Query: 526 VPPF------QLETLQLRSCHL 541
           V P+       L  L +    L
Sbjct: 287 VEPYAFRGLNYLRVLNVSGNQL 308

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 55.1 bits (133), Expect = 3e-08
 Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 1/87 (1%)

Query: 431 FKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNN 490
                 L+LG N +             L++L+L+ N+++   P +   L +L  L L +N
Sbjct: 31  PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90

Query: 491 KLNASLSEIHFVNLTKLTWFSASGNSL 517
           +L   +    F  L+ LT    S N +
Sbjct: 91  RL-KLIPLGVFTGLSNLTKLDISENKI 116

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 28/133 (21%), Positives = 54/133 (40%), Gaps = 11/133 (8%)

Query: 120 PSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQY 179
           P+ +   +L  L ++  +   +     +  L  LR+LNLS    + +    L  L  LQ 
Sbjct: 218 PNCLYGLNLTSLSITHCNLTAVP-YLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQE 276

Query: 180 LDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTK 239
           + L G  L+   +   +   L+    L  L++S   L+   + +   +S+ +L+ L L  
Sbjct: 277 IQLVGGQLAV--VEPYAFRGLNY---LRVLNVSGNQLTTLEESVF--HSVGNLETLILDS 329

Query: 240 CQL---CHFPPLL 249
             L   C    + 
Sbjct: 330 NPLACDCRLLWVF 342

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  123 bits (311), Expect = 4e-31
 Identities = 69/439 (15%), Positives = 146/439 (33%), Gaps = 73/439 (16%)

Query: 118 VNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNL 177
           ++ +L        + +     +     + + +L N + +    +    +    L +   +
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDI-TLNNQKIVTFKNSTMRKLPAALLDSFRQV 71

Query: 178 QYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKL 237
           + L+L+   +    +   +    +  + ++ L +    +      +    ++P L VL L
Sbjct: 72  ELLNLNDLQIEE--IDTYA---FAYAHTIQKLYMGFNAIRYLPPHVF--QNVPLLTVLVL 124

Query: 238 TKCQLCHFPPLLSANFSSLKALHLA---INNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQ 294
            +  L   P  +  N   L  L ++   +   ++  FQ         +L  + LSSN+  
Sbjct: 125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ------ATTSLQNLQLSSNRLT 178

Query: 295 GQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLT 354
               + L  + SL H ++ +N  ++     L+    +E L  + NS    I+ V      
Sbjct: 179 H---VDLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNS----INVVRGPVNV 226

Query: 355 SIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLD 414
            +  L L  N                LT                     +     L  +D
Sbjct: 227 ELTILKLQHN---------------NLTD---------------TAWLLNYP--GLVEVD 254

Query: 415 LSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPL 474
           LS  ++   + +  ++ + L  L + +N L   L      + +LK LDLS+N L   +  
Sbjct: 255 LSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVER 312

Query: 475 SLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETL 534
           +  +   LE L L +N     +  +       L   + S N      N        +   
Sbjct: 313 NQPQFDRLENLYLDHNS----IVTLKLSTHHTLKNLTLSHND--WDCNSLRALFRNVARP 366

Query: 535 QL----RSCHLGPHFPSWL 549
            +    + C +       L
Sbjct: 367 AVDDADQHCKIDYQLEHGL 385

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  123 bits (311), Expect = 4e-30
 Identities = 66/376 (17%), Positives = 135/376 (35%), Gaps = 47/376 (12%)

Query: 146 YLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYM 205
           Y     ++     +   + G    +   L+N + +    + +      +     L     
Sbjct: 25  YDCVFYDVHIDMQTQDVYFG---FEDITLNNQKIVTFKNSTMRKLPAAL-----LDSFRQ 76

Query: 206 LEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLA--- 262
           +E L+L+ + + +   +        +++ L +    + + PP +  N   L  L L    
Sbjct: 77  VELLNLNDLQIEEIDTYAF--AYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND 134

Query: 263 INNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIG-LRNLTSLRHLDLRFNYFNSTT 321
           +++    +F           L  + +S+N  + +I     +  TSL++L L  N      
Sbjct: 135 LSSLPRGIFH------NTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVD 187

Query: 322 PGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKL 381
              +     L   +V++N L        L    ++E LD S NS     +        +L
Sbjct: 188 LSLIPS---LFHANVSYNLLS------TLAIPIAVEELDASHNSI--NVVRGPV--NVEL 234

Query: 382 TSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGH 441
           T + L   +L+           +     L  +DLS  ++   + +  ++ + L  L + +
Sbjct: 235 TILKLQHNNLTD-----TAWLLNYP--GLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 287

Query: 442 NSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHF 501
           N L   L      + +LK LDLS+N L   +  +  +   LE L L +N     +  +  
Sbjct: 288 NRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS----IVTLKL 341

Query: 502 VNLTKLTWFSASGNSL 517
                L   + S N  
Sbjct: 342 STHHTLKNLTLSHNDW 357

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  114 bits (287), Expect = 4e-27
 Identities = 74/339 (21%), Positives = 131/339 (38%), Gaps = 40/339 (11%)

Query: 208 HLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLA---IN 264
           H+D+   ++    + +    +L + K++      +   P  L  +F  ++ L+L    I 
Sbjct: 33  HIDMQTQDVYFGFEDI----TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE 88

Query: 265 NFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGL-RNLTSLRHLDLRFNYFNSTTPG 323
             D   F           +  + +  N  +  +P  + +N+  L  L L  N  +S   G
Sbjct: 89  EIDTYAFA------YAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRG 141

Query: 324 WLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPT-SFARLCKLT 382
                  L  LS++ N+L+  I     +  TS++ L LS N     ++     + +  L 
Sbjct: 142 IFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSN-----RLTHVDLSLIPSLF 195

Query: 383 SVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHN 442
             ++S   LS          +     A+E LD S   I+  +   +     L  L+L HN
Sbjct: 196 HANVSYNLLS----------TLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHN 242

Query: 443 SLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFV 502
           +L       L     L ++DLS N L   +     K+  LE L +SNN+L  +L+  +  
Sbjct: 243 NLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL-VALNL-YGQ 298

Query: 503 NLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHL 541
            +  L     S N  +L    N     +LE L L    +
Sbjct: 299 PIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNSI 336

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 59.6 bits (144), Expect = 2e-09
 Identities = 63/371 (16%), Positives = 118/371 (31%), Gaps = 28/371 (7%)

Query: 125 LKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSG 184
              L  L L  N+         L +   L  ++LS  +   ++      +  L+ L +S 
Sbjct: 231 NVELTILKLQHNNLTDTAW---LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 287

Query: 185 TFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCH 244
             L   +L+         +  L+ LDLS  +L               L+ L L    +  
Sbjct: 288 NRLVALNLY------GQPIPTLKVLDLSHNHLLHVERNQP---QFDRLENLYLDHNSIVT 338

Query: 245 FPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNL 304
                 +   +LK L L+ N++D +  +        RN+    +       +I   L + 
Sbjct: 339 LKL---STHHTLKNLTLSHNDWDCNSLRA-----LFRNVARPAVDDADQHCKIDYQLEHG 390

Query: 305 TSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGL-ENLTSIETLDLSG 363
              +  D  +           S    ++      ++     S   L   +T    + L G
Sbjct: 391 LCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQG 450

Query: 364 NSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGH 423
           N +L  ++    A + +LT+  +    L Q     +DT  +   Y L    L+  + S +
Sbjct: 451 NEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDT--NLRRYRLPKDGLA--RSSDN 506

Query: 424 LTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLE 483
           L       K     +L           A  +    + L+  N  L   +     K + L 
Sbjct: 507 LNKVFTHLKERQAFKLRETQARRTE--ADAKQKETEDLEQENIALEKQLDNKRAKQAELR 564

Query: 484 Y-LDLSNNKLN 493
               L   K+ 
Sbjct: 565 QETSLKRQKVK 575

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 49.5 bits (118), Expect = 2e-06
 Identities = 10/90 (11%), Positives = 29/90 (32%), Gaps = 1/90 (1%)

Query: 428 LLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDL 487
           L      + + +   +           L++ K +   N+ +       L     +E L+L
Sbjct: 23  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNL 82

Query: 488 SNNKLNASLSEIHFVNLTKLTWFSASGNSL 517
           ++ ++   +    F     +       N++
Sbjct: 83  NDLQIE-EIDTYAFAYAHTIQKLYMGFNAI 111

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.8 bits (103), Expect = 1e-04
 Identities = 35/264 (13%), Positives = 64/264 (24%), Gaps = 22/264 (8%)

Query: 118 VNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNL 177
           +N     +  L  LDLS N      + +     + L  L L          L+L     L
Sbjct: 293 LNLYGQPIPTLKVLDLSHNHLL--HVERNQPQFDRLENLYLDHNSIV---TLKLSTHHTL 347

Query: 178 QYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKL 237
           + L LS        L     +       ++  D       +    L    S        L
Sbjct: 348 KNLTLSHNDWDCNSLRALFRNVARPA--VDDADQHCKIDYQLEHGLCCKESDKPYLDRLL 405

Query: 238 TKCQLCHF------PPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVF------ 285
               L              +   ++ ++    +               L   V       
Sbjct: 406 QYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEV 465

Query: 286 IDLSSNQFQGQ---IPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQ 342
             L++ Q Q +     +     T+LR   L  +    ++      F  L+          
Sbjct: 466 QQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRET 525

Query: 343 GTISSVGLENLTSIETLDLSGNSK 366
               +         E L+    + 
Sbjct: 526 QARRTEADAKQKETEDLEQENIAL 549

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  122 bits (307), Expect = 6e-30
 Identities = 65/375 (17%), Positives = 113/375 (30%), Gaps = 32/375 (8%)

Query: 121 SLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYL 180
                 ++  LDLSGN    I     L     L  LNLS       +   L +LS L+ L
Sbjct: 29  LRQSAWNVKELDLSGNPLSQIS-AADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTL 85

Query: 181 DLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKC 240
           DL+  ++            L     +E L  +  N+S+     +  +     K + L   
Sbjct: 86  DLNNNYVQE----------LLVGPSIETLHAANNNISR-----VSCSRGQGKKNIYLANN 130

Query: 241 QLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIG 300
           ++     L     S ++ L L +N        +         L  ++L  N     +   
Sbjct: 131 KITMLRDLDEGCRSRVQYLDLKLNEI--DTVNFAELAASSDTLEHLNLQYNFIY-DVKGQ 187

Query: 301 LRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLD 360
           +     L+ LDL  N   +           + ++S+  N L   I    L    ++E  D
Sbjct: 188 V-VFAKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLV-LIEK-ALRFSQNLEHFD 243

Query: 361 LSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQI 420
           L GN    G +   F++  ++ +V    +               C    L       C+ 
Sbjct: 244 LRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG-----QNEEECTVPTLGHYGAYCCED 298

Query: 421 SGHLTNQLLQFKSLHTLEL--GHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGK 478
                   L         L  G  S    L       +  +++D         I     +
Sbjct: 299 LPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLR 358

Query: 479 LSHLEYLDLSNNKLN 493
                 L+     L+
Sbjct: 359 KQAKITLEQKKKALD 373

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  107 bits (269), Expect = 4e-25
 Identities = 54/405 (13%), Positives = 108/405 (26%), Gaps = 32/405 (7%)

Query: 121 SLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYL 180
            L     L  L+LS N          L SL  LR L+L+          +L    +++ L
Sbjct: 53  DLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQ-----ELLVGPSIETL 104

Query: 181 DLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKC 240
             +   +S            S     +++ L+   ++   D          ++ L L   
Sbjct: 105 HAANNNISRVS--------CSRGQGKKNIYLANNKITMLRDLDE--GCRSRVQYLDLKLN 154

Query: 241 QLCHFP-PLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPI 299
           ++       L+A+  +L+ L+L      N ++     V     L  +DLSSN+    +  
Sbjct: 155 EIDTVNFAELAASSDTLEHLNLQ----YNFIYDVKGQVV-FAKLKTLDLSSNKLA-FMGP 208

Query: 300 GLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETL 359
             ++   +  + LR N         L    +LE   +  N                ++T+
Sbjct: 209 EFQSAAGVTWISLRNNKL-VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267

Query: 360 DLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQ 419
                 KL G+           T             +   D   +        L     +
Sbjct: 268 AKQTVKKLTGQN---EEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSE 324

Query: 420 ISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKL 479
               L  +         ++         +        +   L+     L+  +       
Sbjct: 325 TER-LECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAH 383

Query: 480 SHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPN 524
           + L+                     + L    A        +   
Sbjct: 384 AELDGTLQQAVGQIELQH--ATEEQSPLQLLRAIVKRYEEMYVEQ 426

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  103 bits (258), Expect = 9e-24
 Identities = 64/399 (16%), Positives = 124/399 (31%), Gaps = 29/399 (7%)

Query: 120 PSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQY 179
             L  L  L  LDL+ N        + L    ++  L+ +    +    +        + 
Sbjct: 74  LDLESLSTLRTLDLNNNYV------QELLVGPSIETLHAANNNISR---VSCSRGQGKKN 124

Query: 180 LDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTK 239
           + L+   ++     +  L        +++LDL    +   +   L  +   +L+ L L  
Sbjct: 125 IYLANNKITM----LRDLD-EGCRSRVQYLDLKLNEIDTVNFAELAAS-SDTLEHLNLQY 178

Query: 240 CQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPI 299
             +          F+ LK L L+     N L   G        + +I L +N+    I  
Sbjct: 179 NFIYDVKG--QVVFAKLKTLDLS----SNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEK 231

Query: 300 GLRNLTSLRHLDLRFNYFNSTT-PGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIET 358
            LR   +L H DLR N F+  T   + SK   ++ ++         ++    E  T    
Sbjct: 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK---KLTGQNEEECTVPTL 288

Query: 359 LDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSIC 418
                        P    RL  L   + +L+      ++ L+      A     +D    
Sbjct: 289 GHYGAYCCEDLPAPF-ADRLIALKRKEHALLSGQGSETERLECERENQA-RQREIDALKE 346

Query: 419 QISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGK 478
           Q    +    L+ ++  TLE    +L   +       + L             +  +  +
Sbjct: 347 QYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQI-ELQHATEE 405

Query: 479 LSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSL 517
            S L+ L     +      E   V    +  +    +  
Sbjct: 406 QSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKE 444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 99.2 bits (247), Expect = 2e-22
 Identities = 64/401 (15%), Positives = 126/401 (31%), Gaps = 54/401 (13%)

Query: 143 IPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSG 202
           I +   +    +   ++ +     +     +  N++ LDLSG  LS   +       L+ 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS--QISAAD---LAP 56

Query: 203 LYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLA 262
              LE L+LS   L +  D      SL +L+ L L    +            S++ LH A
Sbjct: 57  FTKLELLNLSSNVLYETLDL----ESLSTLRTLDLNNNYVQELLVG-----PSIETLHAA 107

Query: 263 ---INNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNS 319
              I+    S  Q             I L++N+      +     + +++LDL+ N  ++
Sbjct: 108 NNNISRVSCSRGQ---------GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158

Query: 320 TTPGWL-SKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARL 378
                L +  + LE L++ +N +      V    L   +TLDLS N KL   +   F   
Sbjct: 159 VNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKL---KTLDLSSN-KL-AFMGPEFQSA 213

Query: 379 CKLTSVDLS---LIDLSQDFSQ--------------VLDTFSSCGAYALESLDLSICQIS 421
             +T + L    L+ + +                     T     +       ++   + 
Sbjct: 214 AGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273

Query: 422 GHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNG----FIPLSLG 477
                   +         G         P    L +LK+ + +     G     +     
Sbjct: 274 KLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERE 333

Query: 478 KLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLI 518
             +    +D    +   ++ +   +             +L 
Sbjct: 334 NQARQREIDALKEQY-RTVIDQVTLRKQAKITLEQKKKALD 373

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 79.5 bits (196), Expect = 7e-16
 Identities = 49/213 (23%), Positives = 86/213 (40%), Gaps = 19/213 (8%)

Query: 329 NDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSL 388
           N  +   V  +SL+  ++S+  ++  +++ LDLSGN  L        A   KL  ++LS 
Sbjct: 10  NRYKIEKVTDSSLKQALASL-RQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSS 67

Query: 389 IDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPL 448
             L +                L +LDL+   +      +LL   S+ TL   +N++   +
Sbjct: 68  NVLYE-----TLDLE--SLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNI-SRV 114

Query: 449 PPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLT 508
             +       K + L+NN +     L  G  S ++YLDL  N+++         +   L 
Sbjct: 115 SCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 509 WFSASGNSLILKFNPNWVPPFQLETLQLRSCHL 541
             +   N   +      V   +L+TL L S  L
Sbjct: 173 HLNLQYNF--IYDVKGQVVFAKLKTLDLSSNKL 203

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 72.6 bits (178), Expect = 1e-13
 Identities = 49/382 (12%), Positives = 107/382 (28%), Gaps = 48/382 (12%)

Query: 121 SLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYL 180
                  + +LDL  N+ + +   +   S + L +LNL               + +++  
Sbjct: 139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-----------IYDVK-- 185

Query: 181 DLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKC 240
                  +                 L+ LDLS   L+          S   +  + L   
Sbjct: 186 --GQVVFAK----------------LKTLDLSSNKLAFMGPEF---QSAAGVTWISLRNN 224

Query: 241 QLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIG 300
           +L      L     +L+   L  N F     +     F  +N     ++    +      
Sbjct: 225 KLVLIEKALR-FSQNLEHFDLRGNGFHCGTLRD----FFSKNQRVQTVAKQTVKKLTGQN 279

Query: 301 LRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISS---VGLENLTSIE 357
               T                  +  +   L+    A  S QG+ +       EN     
Sbjct: 280 EEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQR 339

Query: 358 TLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSI 417
            +D     +    I     R     +++     L +  S      +       +++    
Sbjct: 340 EIDALKE-QYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIE 398

Query: 418 CQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLG 477
            Q   H T +    + L  +   +  ++  +     + ++++  D+  +        +  
Sbjct: 399 LQ---HATEEQSPLQLLRAIVKRYEEMY--VEQQSVQNNAIRDWDMYQHKETQLAEENAR 453

Query: 478 KLSHLEYLDLSNNKLNASLSEI 499
                   DL+    NA+L E+
Sbjct: 454 LKKLNGEADLALASANATLQEL 475

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 57.5 bits (139), Expect = 6e-09
 Identities = 26/250 (10%), Positives = 59/250 (23%), Gaps = 14/250 (5%)

Query: 117 KVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQL-GNLS 175
            + P       +  + L  N      I K L   +NL + +L G  F             
Sbjct: 205 FMGPEFQSAAGVTWISLRNNKLV--LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ 262

Query: 176 NLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVL 235
            +Q +       +   L   +    +   +  +      +L       L+        +L
Sbjct: 263 RVQTVAKQ----TVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALL 318

Query: 236 KLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVF-GLRNLVFIDLSSNQFQ 294
                +          N +  + +                 V    +  + ++       
Sbjct: 319 SGQGSETERLECERE-NQARQREIDAL----KEQYRTVIDQVTLRKQAKITLEQKKKALD 373

Query: 295 GQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLT 354
            Q+  G R    L     +             + + L+ L       +            
Sbjct: 374 EQVSNGRRAHAELDGTLQQAVGQIELQ-HATEEQSPLQLLRAIVKRYEEMYVEQQSVQNN 432

Query: 355 SIETLDLSGN 364
           +I   D+  +
Sbjct: 433 AIRDWDMYQH 442

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  114 bits (288), Expect = 2e-28
 Identities = 61/356 (17%), Positives = 104/356 (29%), Gaps = 46/356 (12%)

Query: 146 YLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYM 205
           +         L   G+         L         D +            S    +    
Sbjct: 7   HHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRW---------HSAWRQANSNN 57

Query: 206 LEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINN 265
            +    +   L   +D L      P    L+L    L  FP       S L+ + +    
Sbjct: 58  PQIETRTGRALKATADLLEDATQ-PGRVALELRSVPLPQFPDQAF-RLSHLQHMTID--- 112

Query: 266 FDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWL 325
               L +    +     L  + L+ N  +  +P  + +L  LR L +             
Sbjct: 113 -AAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI------------- 157

Query: 326 SKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVD 385
               +L  L      L  T +S   + L ++++L L     +   +P S A L  L S+ 
Sbjct: 158 RACPELTELP---EPLASTDASGEHQGLVNLQSLRLEWT-GIR-SLPASIANLQNLKSLK 212

Query: 386 LS---LIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHN 442
           +    L  L      +           LE LDL  C    +          L  L L   
Sbjct: 213 IRNSPLSALGPAIHHL---------PKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDC 263

Query: 443 SLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSE 498
           S    LP  +  L+ L+KLDL   +    +P  + +L     + +  +        
Sbjct: 264 SNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQH 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  106 bits (267), Expect = 1e-25
 Identities = 56/309 (18%), Positives = 102/309 (33%), Gaps = 33/309 (10%)

Query: 211 LSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSL 270
              +    ++      + L   +          H      AN ++ +             
Sbjct: 14  RENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQ-ANSNNPQIETRTGRAL--KA 70

Query: 271 FQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFND 330
                        V ++L S     Q P     L+ L+H+ +         P  + +F  
Sbjct: 71  TADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLMEL-PDTMQQFAG 128

Query: 331 LEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLID 390
           LE L++A N L+   +S+   +L  +  L +    +L  ++P   A              
Sbjct: 129 LETLTLARNPLRALPASIA--SLNRLRELSIRACPELT-ELPEPLASTDASGEHQ----G 181

Query: 391 LSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPP 450
           L                  L+SL L    I   L   +   ++L +L++ ++ L   L P
Sbjct: 182 LVN----------------LQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGP 223

Query: 451 ALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASL-SEIHFVNLTKLTW 509
           A+  L  L++LDL         P   G  + L+ L L +     +L  +IH   LT+L  
Sbjct: 224 AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIH--RLTQLEK 281

Query: 510 FSASGNSLI 518
               G   +
Sbjct: 282 LDLRGCVNL 290

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 90.0 bits (224), Expect = 6e-20
 Identities = 43/251 (17%), Positives = 78/251 (31%), Gaps = 31/251 (12%)

Query: 280 LRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWN 339
                 +    +         L       + D         +    +  N+ +  +    
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRW----HSAWRQANSNNPQIETRTGR 66

Query: 340 SLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLS---LIDLSQDFS 396
           +L+ T   +          L+L     L  + P    RL  L  + +    L++L     
Sbjct: 67  ALKATADLLEDATQPGRVALELRSV-PLP-QFPDQAFRLSHLQHMTIDAAGLMELPDTMQ 124

Query: 397 QVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALG--- 453
           Q            LE+L L+   +   L   +     L  L +        LP  L    
Sbjct: 125 Q---------FAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTD 174

Query: 454 ------ELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKL 507
                  L +L+ L L    +   +P S+  L +L+ L + N+ L+A    IH  +L KL
Sbjct: 175 ASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIH--HLPKL 231

Query: 508 TWFSASGNSLI 518
                 G + +
Sbjct: 232 EELDLRGCTAL 242

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 90.0 bits (224), Expect = 6e-20
 Identities = 50/277 (18%), Positives = 94/277 (33%), Gaps = 49/277 (17%)

Query: 125 LKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSG 184
               + L+L        Q P     L +L+++ +  A     +P  +   + L+ L L+ 
Sbjct: 80  QPGRVALELRSVPLP--QFPDQAFRLSHLQHMTIDAAGLME-LPDTMQQFAGLETLTLAR 136

Query: 185 TFLSNYDLHVDSL-SWLSGLYMLEHLDLSQMNLSKA-------SDWLLVTNSLPSLKVLK 236
             L        +L + ++ L  L  L +               +D       L +L+ L+
Sbjct: 137 NPLR-------ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLR 189

Query: 237 LTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQ 296
           L    +   P  ++ N  +LK+L +     ++ L   G  +  L  L  +DL        
Sbjct: 190 LEWTGIRSLPASIA-NLQNLKSLKIR----NSPLSALGPAIHHLPKLEELDLRGCTALRN 244

Query: 297 IPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSI 356
            P        L+ L              L   ++L  L             + +  LT +
Sbjct: 245 YPPIFGGRAPLKRLI-------------LKDCSNLLTL------------PLDIHRLTQL 279

Query: 357 ETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQ 393
           E LDL G   L  ++P+  A+L     + +     +Q
Sbjct: 280 EKLDLRGCVNL-SRLPSLIAQLPANCIILVPPHLQAQ 315

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 85.8 bits (213), Expect = 2e-18
 Identities = 44/226 (19%), Positives = 76/226 (33%), Gaps = 14/226 (6%)

Query: 120 PSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQY 179
                L HL H+ +        ++P  +     L  L L+       +P  + +L+ L+ 
Sbjct: 98  DQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLRA-LPASIASLNRLRE 154

Query: 180 LDLSG----TFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVL 235
           L +      T L       D+     GL  L+ L L    +      +    +L +LK L
Sbjct: 155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASI---ANLQNLKSL 211

Query: 236 KLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQG 295
           K+    L    P +  +   L+ L L       +         G   L  + L       
Sbjct: 212 KIRNSPLSALGPAIH-HLPKLEELDLRGCTALRNY---PPIFGGRAPLKRLILKDCSNLL 267

Query: 296 QIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSL 341
            +P+ +  LT L  LDLR     S  P  +++      + V  +  
Sbjct: 268 TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 83.1 bits (206), Expect = 1e-17
 Identities = 54/343 (15%), Positives = 104/343 (30%), Gaps = 35/343 (10%)

Query: 125 LKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSG 184
                +L   G+          L   +     + +          +  N +N Q    +G
Sbjct: 11  SSGRENLYFQGS-TALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNNPQIETRTG 65

Query: 185 TFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCH 244
             L      ++  +          L+L  + L +  D       L  L+ + +    L  
Sbjct: 66  RALKATADLLEDATQPG----RVALELRSVPLPQFPDQA---FRLSHLQHMTIDAAGLME 118

Query: 245 FPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQ---------FQG 295
            P  +   F+ L+ L LA     N L    + +  L  L  + + +              
Sbjct: 119 LPDTMQ-QFAGLETLTLA----RNPLRALPASIASLNRLRELSIRACPELTELPEPLAST 173

Query: 296 QIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTS 355
                 + L +L+ L L +     + P  ++   +L+ L +  + L     ++   +L  
Sbjct: 174 DASGEHQGLVNLQSLRLEWTGI-RSLPASIANLQNLKSLKIRNSPLSALGPAIH--HLPK 230

Query: 356 IETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDL 415
           +E LDL G + L    P  F     L  + L   D S     +           LE LDL
Sbjct: 231 LEELDLRGCTALR-NYPPIFGGRAPLKRLILK--DCSN-LLTLPLDIHRLTQ--LEKLDL 284

Query: 416 SICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSL 458
             C     L + + Q  +   + +  +              + 
Sbjct: 285 RGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVARPAE 327

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 51.5 bits (124), Expect = 3e-07
 Identities = 27/135 (20%), Positives = 46/135 (34%), Gaps = 19/135 (14%)

Query: 120 PSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQY 179
            S+ +L++L  L +  +      +   +  L  L  L+L G       P   G  + L+ 
Sbjct: 200 ASIANLQNLKSLKIRNSPLS--ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKR 257

Query: 180 LDLSGTFLSNYDLHVDSLSWL----SGLYMLEHLDLSQ-MNLSKASDWLLVTNSLPSLKV 234
           L L             +L  L      L  LE LDL   +NLS+    +     LP+  +
Sbjct: 258 LILK---------DCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI---AQLPANCI 305

Query: 235 LKLTKCQLCHFPPLL 249
           + +            
Sbjct: 306 ILVPPHLQAQLDQHR 320

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  112 bits (283), Expect = 5e-27
 Identities = 74/397 (18%), Positives = 120/397 (30%), Gaps = 82/397 (20%)

Query: 121 SLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYL 180
           S   L  L  LD   +    +     +  L  L  L  +         L L   +NL YL
Sbjct: 37  SEEQLATLTSLDCHNSSITDM---TGIEKLTGLTKLICTSNNITT---LDLSQNTNLTYL 90

Query: 181 DLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKC 240
                 L+N D+        + L  L +L+     L+K     L  +  P L  L   + 
Sbjct: 91  ACDSNKLTNLDV--------TPLTKLTYLNCDTNKLTK-----LDVSQNPLLTYLNCARN 137

Query: 241 QLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIG 300
            L        ++ + L  L   +N     L      V     L  +D S N+      + 
Sbjct: 138 TLTEIDV---SHNTQLTELDCHLNKKITKLD-----VTPQTQLTTLDCSFNKITE---LD 186

Query: 301 LRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLD 360
           +     L  L+   N         L++   L FL  + N     ++ + +  LT +   D
Sbjct: 187 VSQNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNK----LTEIDVTPLTQLTYFD 239

Query: 361 LSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQI 420
            S N                LT +D+S +                    L +L      +
Sbjct: 240 CSVN---------------PLTELDVSTLS------------------KLTTLHCIQTDL 266

Query: 421 SGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLS 480
                  L     L   +         L   +   + L  LD     +     L L +  
Sbjct: 267 L---EIDLTHNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGIT---ELDLSQNP 318

Query: 481 HLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSL 517
            L YL L+N +    L+E+   + TKL   S     +
Sbjct: 319 KLVYLYLNNTE----LTELDVSHNTKLKSLSCVNAHI 351

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 79.7 bits (197), Expect = 5e-16
 Identities = 44/242 (18%), Positives = 78/242 (32%), Gaps = 32/242 (13%)

Query: 277 VFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSV 336
            F   N      ++ + Q    I    L +L  LD   +     T   + K   L  L  
Sbjct: 14  WFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG--IEKLTGLTKLIC 71

Query: 337 AWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPT-SFARLCKLTSVDLSLIDLSQDF 395
             N+    I+++ L   T++  L    N     K+       L KLT ++     L+   
Sbjct: 72  TSNN----ITTLDLSQNTNLTYLACDSN-----KLTNLDVTPLTKLTYLNCDTNKLT--- 119

Query: 396 SQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGEL 455
                         L  L+ +   ++      +     L  L+   N     L   +   
Sbjct: 120 -----KLDVSQNPLLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKITKLD--VTPQ 169

Query: 456 SSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGN 515
           + L  LD S N +     L + +   L  L+   N     ++++      +LT+   S N
Sbjct: 170 TQLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNN----ITKLDLNQNIQLTFLDCSSN 222

Query: 516 SL 517
            L
Sbjct: 223 KL 224

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 35/238 (14%), Positives = 58/238 (24%), Gaps = 30/238 (12%)

Query: 121 SLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYL 180
            L     L  LD S N    I +      L  L Y + S         L +  LS L  L
Sbjct: 207 DLNQNIQLTFLDCSSNKLTEIDV----TPLTQLTYFDCSVNPL---TELDVSTLSKLTTL 259

Query: 181 DLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKC 240
               T L   DL        +    L +         K  D          L +L     
Sbjct: 260 HCIQTDLLEIDL--------THNTQLIYFQAEGCRKIKELD----VTHNTQLYLLDCQAA 307

Query: 241 QLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIG 300
            +        +    L  L+L                     L  +   +   Q    +G
Sbjct: 308 GITELDL---SQNPKLVYLYLNNTELTELDVS------HNTKLKSLSCVNAHIQDFSSVG 358

Query: 301 LRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIET 358
              + +L +         +     L+  +    +S       G   ++   +    + 
Sbjct: 359 --KIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQ 414

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  110 bits (276), Expect = 8e-27
 Identities = 60/294 (20%), Positives = 104/294 (35%), Gaps = 29/294 (9%)

Query: 228 SLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLA---INNFDNSLFQYGSWVFGLRNLV 284
           +    K+ K+T   L      L  +  ++K L L+   ++    +             L 
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLA------PFTKLE 61

Query: 285 FIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGT 344
            ++LSSN     + +   +L++LR LDL  NY        L     +E L  A N+    
Sbjct: 62  LLNLSSNVLYETLDLE--SLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNN---- 110

Query: 345 ISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSS 404
           IS V        + + L+ N K+            ++  +DL       +   V     +
Sbjct: 111 ISRVSCSRGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLK----LNEIDTVNFAELA 165

Query: 405 CGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLS 464
             +  LE L+L    I        + F  L TL+L  N L   + P     + +  + L 
Sbjct: 166 ASSDTLEHLNLQYNFIYD--VKGQVVFAKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLR 222

Query: 465 NNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLI 518
           NN L   I  +L    +LE+ DL  N  +       F    ++   +      +
Sbjct: 223 NNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKL 275

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 99.3 bits (248), Expect = 4e-23
 Identities = 56/269 (20%), Positives = 94/269 (34%), Gaps = 25/269 (9%)

Query: 121 SLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYL 180
                 ++  LDLSGN    I     L     L  LNLS       +   L +LS L+ L
Sbjct: 29  LRQSAWNVKELDLSGNPLSQIS-AADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTL 85

Query: 181 DLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKC 240
           DL+  ++            L     +E L  +  N+S+     +  +     K + L   
Sbjct: 86  DLNNNYVQE----------LLVGPSIETLHAANNNISR-----VSCSRGQGKKNIYLANN 130

Query: 241 QLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIG 300
           ++     L     S ++ L L +N  D     +         L  ++L  N     +  G
Sbjct: 131 KITMLRDLDEGCRSRVQYLDLKLNEIDT--VNFAELAASSDTLEHLNLQYNFIY-DVK-G 186

Query: 301 LRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLD 360
                 L+ LDL  N      P        + ++S+  N L   I    L    ++E  D
Sbjct: 187 QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLV-LIEK-ALRFSQNLEHFD 243

Query: 361 LSGNSKLGGKIPTSFARLCKLTSVDLSLI 389
           L GN    G +   F++  ++ +V    +
Sbjct: 244 LRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 82.3 bits (204), Expect = 2e-17
 Identities = 45/250 (18%), Positives = 83/250 (33%), Gaps = 26/250 (10%)

Query: 121 SLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYL 180
            L     L  L+LS N          L SL  LR L+L+          +L    +++ L
Sbjct: 53  DLAPFTKLELLNLSSNVLYETL---DLESLSTLRTLDLNNNYVQ-----ELLVGPSIETL 104

Query: 181 DLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKC 240
             +   +S            S     +++ L+   ++   D          ++ L L   
Sbjct: 105 HAANNNISRVS--------CSRGQGKKNIYLANNKITMLRDLDE--GCRSRVQYLDLKLN 154

Query: 241 QLCHFP-PLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPI 299
           ++       L+A+  +L+ L+L      N ++     V     L  +DLSSN+    +  
Sbjct: 155 EIDTVNFAELAASSDTLEHLNLQ----YNFIYDVKGQVV-FAKLKTLDLSSNKLA-FMGP 208

Query: 300 GLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETL 359
             ++   +  + LR N         L    +LE   +  N                ++T+
Sbjct: 209 EFQSAAGVTWISLRNNKL-VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267

Query: 360 DLSGNSKLGG 369
                 KL G
Sbjct: 268 AKQTVKKLTG 277

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 82.3 bits (204), Expect = 2e-17
 Identities = 49/240 (20%), Positives = 84/240 (35%), Gaps = 43/240 (17%)

Query: 302 RNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDL 361
           +N    +   +  +              +++ L ++ N L   IS+  L   T +E L+L
Sbjct: 7   QNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNL 65

Query: 362 SGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQIS 421
           S N                L    L L  LS                 L +LDL+   + 
Sbjct: 66  SSN---------------VLYET-LDLESLST----------------LRTLDLNNNYVQ 93

Query: 422 GHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSH 481
                +LL   S+ TL   +N++   +  +       K + L+NN +     L  G  S 
Sbjct: 94  -----ELLVGPSIETLHAANNNI-SRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSR 145

Query: 482 LEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHL 541
           ++YLDL  N+++         +   L   +   N   +      V   +L+TL L S  L
Sbjct: 146 VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF--IYDVKGQVVFAKLKTLDLSSNKL 203

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 77.3 bits (191), Expect = 9e-16
 Identities = 42/217 (19%), Positives = 78/217 (35%), Gaps = 23/217 (10%)

Query: 120 PSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQY 179
             L  L  L  LDL+ N  +       L    ++  L+ +    +    +        + 
Sbjct: 74  LDLESLSTLRTLDLNNNYVQ------ELLVGPSIETLHAANNNISR---VSCSRGQGKKN 124

Query: 180 LDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTK 239
           + L+   ++     +  L        +++LDL    +   +   L  +   +L+ L L  
Sbjct: 125 IYLANNKIT----MLRDLD-EGCRSRVQYLDLKLNEIDTVNFAELAAS-SDTLEHLNLQY 178

Query: 240 CQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPI 299
             +          F+ LK L L+     N L   G        + +I L +N+    I  
Sbjct: 179 NFIYDVKGQ--VVFAKLKTLDLS----SNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEK 231

Query: 300 GLRNLTSLRHLDLRFNYFNSTT-PGWLSKFNDLEFLS 335
            LR   +L H DLR N F+  T   + SK   ++ ++
Sbjct: 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA 268

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  112 bits (281), Expect = 2e-26
 Identities = 82/403 (20%), Positives = 153/403 (37%), Gaps = 21/403 (5%)

Query: 125 LKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQ-YLDLS 183
             +L HLDLS N F+ + I K  G++  L++L LS         L + +L+  +  L L 
Sbjct: 89  TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLG 148

Query: 184 GTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLK-VLKLTKCQL 242
            T+    D           L+++   +     +   S   +    L ++K VL+  KC  
Sbjct: 149 ETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSY 208

Query: 243 CHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQI----- 297
                        L  L L       + F     +     + +  +S+ + QGQ+     
Sbjct: 209 FLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDF 268

Query: 298 PIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIE 357
                +L +L    +  + F          F+++   +   +  +  +  +    ++   
Sbjct: 269 DYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTR-MVHMLCPSKISPFL 327

Query: 358 TLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLS--QDFSQVLDTFSSCGAYALESLDL 415
            LD S N  L   +  +   L +L ++ L +  L      +++     S     L+ LD+
Sbjct: 328 HLDFSNN-LLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKS-----LQQLDI 381

Query: 416 SICQISGHLTNQLLQF-KSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPL 474
           S   +S         + KSL +L +  N L   +   L     +K LDL +N +   IP 
Sbjct: 382 SQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SIPK 438

Query: 475 SLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSL 517
            + KL  L+ L++++N+L  S+ +  F  LT L       N  
Sbjct: 439 QVVKLEALQELNVASNQL-KSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  100 bits (250), Expect = 1e-22
 Identities = 70/421 (16%), Positives = 126/421 (29%), Gaps = 33/421 (7%)

Query: 124 DLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLS 183
            L  L  L +S N  + +         + L YL+LS  K      +      NL++LDLS
Sbjct: 43  SLSKLRILIISHNRIQYLD-ISVFKFNQELEYLDLSHNKLVK---ISCHPTVNLKHLDLS 98

Query: 184 GTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLC 243
                N    +        +  L+ L LS  +L K+S   +    L   KVL +      
Sbjct: 99  ----FNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPI--AHLNISKVLLVLGETYG 152

Query: 244 HFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRN 303
                            L I    N  F              +D+S           ++ 
Sbjct: 153 EKEDPEG--LQDFNTESLHIVFPTNKEFH-----------FILDVSVKTVANLELSNIKC 199

Query: 304 LTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSG 363
           +          +               L  +   WNS    +  V    +      ++  
Sbjct: 200 VLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKL 259

Query: 364 NSKLGG-KIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISG 422
             +L       S   L  L+   +         S + + FS+     +   + ++     
Sbjct: 260 QGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSN-----MNIKNFTVSGTRM 314

Query: 423 HLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLS--LGKLS 480
                  +      L+  +N L   +    G L+ L+ L L  N L     ++    ++ 
Sbjct: 315 VHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMK 374

Query: 481 HLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCH 540
            L+ LD+S N ++    +        L   + S N   L        P +++ L L S  
Sbjct: 375 SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI--LTDTIFRCLPPRIKVLDLHSNK 432

Query: 541 L 541
           +
Sbjct: 433 I 433

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 97.2 bits (242), Expect = 1e-21
 Identities = 72/418 (17%), Positives = 135/418 (32%), Gaps = 37/418 (8%)

Query: 130 HLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSN 189
            L++S N    +     + SL  LR L +S  +   +          L+YLDLS   L  
Sbjct: 25  ILNISQNYISELW-TSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK 83

Query: 190 YDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLL 249
              H            L+HLDLS  N   A        ++  LK L L+   L       
Sbjct: 84  ISCH--------PTVNLKHLDLSF-NAFDALPICKEFGNMSQLKFLGLSTTHLEKSSV-- 132

Query: 250 SANFSSLKALHLAINNFDNSLFQYGSWVF---GLRNLVFIDLSSNQFQGQIPIGLRNLTS 306
               + L    + +   +    +            +L  +  ++ +F   + + ++ + +
Sbjct: 133 -LPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVAN 191

Query: 307 LRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSK 366
           L   +++    ++    +LS    L+      N               ++  ++ + NS 
Sbjct: 192 LELSNIKCVLEDNKCSYFLSILAKLQTNPKLSN--------------LTLNNIETTWNSF 237

Query: 367 LGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTN 426
           +             +    +S + L          +S     AL    +         + 
Sbjct: 238 IR---ILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSY 294

Query: 427 QLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLD 486
               F +++      +           ++S    LD SNN+L   +  + G L+ LE L 
Sbjct: 295 IYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLI 354

Query: 487 LSNNKLNASLSEIH--FVNLTKLTWFSASGNSLILKFNPN-WVPPFQLETLQLRSCHL 541
           L  N+L   LS+I      +  L     S NS+              L +L + S  L
Sbjct: 355 LQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNIL 411

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 52.9 bits (127), Expect = 2e-07
 Identities = 42/256 (16%), Positives = 79/256 (30%), Gaps = 19/256 (7%)

Query: 282 NLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSL 341
           +   +D S N     +P  L        L++  NY +      +   + L  L ++ N +
Sbjct: 1   SEFLVDRSKNGLI-HVPKDL--SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRI 57

Query: 342 QGTISSVGLENLTSIETLDLSGN--SKLGGKIPTSFARLCKLTSVDLSLIDL-SQDFSQV 398
           Q  +     +    +E LDLS N   K+      S      L  +DLS     +    + 
Sbjct: 58  Q-YLDISVFKFNQELEYLDLSHNKLVKI------SCHPTVNLKHLDLSFNAFDALPICKE 110

Query: 399 LDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSL 458
               S      L+ L LS   +       +        L +   +      P   +  + 
Sbjct: 111 FGNMSQ-----LKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNT 165

Query: 459 KKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLI 518
           + L +       F  +    +  +  L+LSN K     ++  +  L+ L     +     
Sbjct: 166 ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSY-FLSILAKLQTNPKLSN 224

Query: 519 LKFNPNWVPPFQLETL 534
           L  N           +
Sbjct: 225 LTLNNIETTWNSFIRI 240

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  112 bits (281), Expect = 2e-26
 Identities = 87/408 (21%), Positives = 162/408 (39%), Gaps = 37/408 (9%)

Query: 125 LKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSG 184
           +  L HLDLS NDF+ + + K  G+L  L +L LS AKF     L L  +++L    +  
Sbjct: 120 MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSCILL 176

Query: 185 TFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKV--LKLTKCQL 242
             +S +    ++ S       + HL     N   +    +  N+L  L++  +KL     
Sbjct: 177 DLVSYHIKGGETESLQIPNTTVLHLVFHP-NSLFSVQVNMSVNALGHLQLSNIKLNDENC 235

Query: 243 CHFPPLLSANFSSLKALHLAINNFDNSLFQYGS-----WVFGLRNLVFID--LSSNQFQG 295
                 LS        L++ + + + +           W   +  L   +  ++    + 
Sbjct: 236 QRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDRE 295

Query: 296 QIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTS 355
           +       L SL    ++   F  +     S F ++    ++ +     I  V   + +S
Sbjct: 296 EFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTP-FIHMVCPPSPSS 354

Query: 356 IETLDLSGNSKLGGKIPTSFARLCKLTSVDLS---LIDLSQDFSQVLDTFSSCGAYALES 412
              L+ + N      +    + L +L ++ L    L +  +      +  S      LE+
Sbjct: 355 FTFLNFTQN-VFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSS------LET 407

Query: 413 LDLSICQISGHLTNQLLQF-KSLHTLELGHNSL----FGPLPPALGELSSLKKLDLSNNM 467
           LD+S+  ++ H  ++   + +S+  L L  N L    F  LPP       +K LDL NN 
Sbjct: 408 LDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP------KVKVLDLHNNR 461

Query: 468 LNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGN 515
           +   IP  +  L  L+ L++++N+L  S+ +  F  LT L +     N
Sbjct: 462 IMS-IPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 91.1 bits (226), Expect = 1e-19
 Identities = 64/414 (15%), Positives = 122/414 (29%), Gaps = 33/414 (7%)

Query: 131 LDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNY 190
           L LS N    ++    +  L  LR L LS  +   +         +L+YLD+S   L   
Sbjct: 57  LSLSQNSISELR-MPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-- 113

Query: 191 DLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLS 250
                ++S    +  L HLDLS  N            +L  L  L L+  +         
Sbjct: 114 -----NISC-CPMASLRHLDLSF-NDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDL--- 163

Query: 251 ANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHL 310
              + L    + ++     +    +    + N   + L  +           ++ +L HL
Sbjct: 164 LPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHL 223

Query: 311 DLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGK 370
            L     N      L  F           ++         +    +              
Sbjct: 224 QLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKL-------------- 269

Query: 371 IPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQ 430
               F     +  +++  + +++   +   T+S     +L    +               
Sbjct: 270 --FQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSV 327

Query: 431 FKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNN 490
           F  ++   L  +             SS   L+ + N+    +      L  L+ L L  N
Sbjct: 328 FAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN 387

Query: 491 KLNASLSEI--HFVNLTKLTWFSASGNSL-ILKFNPNWVPPFQLETLQLRSCHL 541
            L  +  ++     N++ L     S NSL    ++        +  L L S  L
Sbjct: 388 GL-KNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML 440

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 53.3 bits (128), Expect = 1e-07
 Identities = 47/268 (17%), Positives = 85/268 (31%), Gaps = 25/268 (9%)

Query: 285 FIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGT 344
            +D S+      +P  L      + L L  N  +      +S  ++L  L ++ N ++ +
Sbjct: 35  MVDYSNRNLT-HVPKDL--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-S 90

Query: 345 ISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQ-DFSQVLDTFS 403
           +          +E LD+S N +L   I      +  L  +DLS  D       +     +
Sbjct: 91  LDFHVFLFNQDLEYLDVSHN-RL-QNIS--CCPMASLRHLDLSFNDFDVLPVCKEFGNLT 146

Query: 404 SCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGP-LPPALGELSSLKKLD 462
                 L  L LS  +    L    +    L  + L   S           ++ +   L 
Sbjct: 147 K-----LTFLGLSAAKFR-QLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLH 200

Query: 463 LSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNA---------SLSEIHFVNLTKLTWFSAS 513
           L  +  + F       ++ L +L LSN KLN                   L  +T     
Sbjct: 201 LVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIE 260

Query: 514 GNSLILKFNPNWVPPFQLETLQLRSCHL 541
                      +  P  +E L + +  +
Sbjct: 261 TTWKCSVKLFQFFWPRPVEYLNIYNLTI 288

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 27/162 (16%), Positives = 53/162 (32%), Gaps = 22/162 (13%)

Query: 125 LKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSG 184
                 L+ + N F    + +   +L+ L+ L L                 N+  L+   
Sbjct: 352 PSSFTFLNFTQNVFTDS-VFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLD 409

Query: 185 TFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTN----------------- 227
             L++ + H    +  +    +  L+LS   L+ +    L                    
Sbjct: 410 VSLNSLNSHAYDRT-CAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKD 468

Query: 228 --SLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFD 267
              L +L+ L +   QL   P  +    +SL+ + L  N +D
Sbjct: 469 VTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWD 510

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  103 bits (259), Expect = 2e-24
 Identities = 59/331 (17%), Positives = 114/331 (34%), Gaps = 66/331 (19%)

Query: 175 SNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKV 234
            +   LDL    ++   +          L  L  L L    +SK S        L  L+ 
Sbjct: 52  PDTALLDLQNNKITE--IKDGDFK---NLKNLHTLILINNKISKISPGAF--APLVKLER 104

Query: 235 LKLTKCQLCHFPPLLSANFSSLKALHLAINNF---DNSLFQYGSWVFGLRNLVFIDLSSN 291
           L L+K QL   P  +     +L+ L +  N       S+F       GL  ++ ++L +N
Sbjct: 105 LYLSKNQLKELPEKM---PKTLQELRVHENEITKVRKSVFN------GLNQMIVVELGTN 155

Query: 292 QFQ-GQIPIG-LRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVG 349
             +   I  G  + +  L ++ +      +   G       L  L +  N +   + +  
Sbjct: 156 PLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPS---LTELHLDGNKIT-KVDAAS 211

Query: 350 LENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYA 409
           L+ L ++  L LS N                +++VD               + ++     
Sbjct: 212 LKGLNNLAKLGLSFN---------------SISAVDN-------------GSLANTPH-- 241

Query: 410 LESLDLSICQISGHLTNQLLQFKSLHTLELGHNSL-------FGPLPPALGELSSLKKLD 462
           L  L L+  ++   +   L   K +  + L +N++       F P P    + +S   + 
Sbjct: 242 LRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCP-PGYNTKKASYSGVS 299

Query: 463 LSNNMLNGFI--PLSLGKLSHLEYLDLSNNK 491
           L +N +  +   P +   +     + L N K
Sbjct: 300 LFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 95.1 bits (237), Expect = 1e-21
 Identities = 58/299 (19%), Positives = 100/299 (33%), Gaps = 37/299 (12%)

Query: 231 SLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNF---DNSLFQYGSWVFGLRNLVFID 287
            L+V++ +   L   P  L  +      L L  N      +  F+       L+NL  + 
Sbjct: 32  HLRVVQCSDLGLEKVPKDLPPD---TALLDLQNNKITEIKDGDFK------NLKNLHTLI 82

Query: 288 LSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISS 347
           L +N+     P     L  L  L L  N               L+ L V  N +   +  
Sbjct: 83  LINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM---PKTLQELRVHENEIT-KVRK 138

Query: 348 VGLENLTSIETLDLSGNSKLGGKIP-TSFARLCKLTSVDLS---LIDLSQDFSQVLDTFS 403
                L  +  ++L  N      I   +F  + KL+ + ++   +  + Q          
Sbjct: 139 SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG------LPP 192

Query: 404 SCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDL 463
           S     L  L L   +I+      L    +L  L L  NS+      +L     L++L L
Sbjct: 193 S-----LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL 247

Query: 464 SNNMLNGFIPLSLGKLSHLEYLDLSNNKL-----NASLSEIHFVNLTKLTWFSASGNSL 517
           +NN L   +P  L    +++ + L NN +     N      +       +  S   N +
Sbjct: 248 NNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 92.4 bits (230), Expect = 9e-21
 Identities = 58/276 (21%), Positives = 91/276 (32%), Gaps = 28/276 (10%)

Query: 121 SLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYL 180
              +LK+L  L L  N    I  P     L  L  L LS  +      L       LQ L
Sbjct: 71  DFKNLKNLHTLILINNKISKIS-PGAFAPLVKLERLYLSKNQLKE---LPEKMPKTLQEL 126

Query: 181 DLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKC 240
            +    ++   +        +GL  +  ++L    L  +         +  L  +++   
Sbjct: 127 RVHENEITK--VRKSV---FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT 181

Query: 241 QLCHFPPLLSANFSSLKALHLAINNF---DNSLFQYGSWVFGLRNLVFIDLSSNQFQGQI 297
            +   P  L     SL  LHL  N     D +  +      GL NL  + LS N      
Sbjct: 182 NITTIPQGL---PPSLTELHLDGNKITKVDAASLK------GLNNLAKLGLSFNSISAVD 232

Query: 298 PIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQ----GTISSVG-LEN 352
              L N   LR L L  N      PG L+    ++ + +  N++           G    
Sbjct: 233 NGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTK 291

Query: 353 LTSIETLDLSGNSKLGGKI-PTSFARLCKLTSVDLS 387
             S   + L  N     +I P++F  +    +V L 
Sbjct: 292 KASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLG 327

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 80.0 bits (198), Expect = 1e-16
 Identities = 39/201 (19%), Positives = 73/201 (36%), Gaps = 17/201 (8%)

Query: 121 SLVDLKHLIHLDLSGNDFEGIQIPK-YLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQY 179
               L  +I ++L  N  +   I       ++ L Y+ ++         +  G   +L  
Sbjct: 140 VFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT---IPQGLPPSLTE 196

Query: 180 LDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTK 239
           L L G  ++  D        L GL  L  L LS  ++S   +  L   + P L+ L L  
Sbjct: 197 LHLDGNKITKVDAAS-----LKGLNNLAKLGLSFNSISAVDNGSL--ANTPHLRELHLNN 249

Query: 240 CQLCHFPPLLSANFSSLKALHLA---INNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQ-G 295
            +L   P  L+ +   ++ ++L    I+   ++ F    +     +   + L SN  Q  
Sbjct: 250 NKLVKVPGGLA-DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW 308

Query: 296 QIPIGL-RNLTSLRHLDLRFN 315
           +I     R +     + L   
Sbjct: 309 EIQPSTFRCVYVRAAVQLGNY 329

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  105 bits (263), Expect = 2e-24
 Identities = 85/402 (21%), Positives = 131/402 (32%), Gaps = 36/402 (8%)

Query: 127 HLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQL-GNLSNLQYLDLSGT 185
           H+ ++DLS N    +        L++L++L +       +I       LS+L  L L   
Sbjct: 31  HVNYVDLSLNSIAELN-ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 186 FLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHF 245
                +         +GL  LE L L+Q NL  A         L SL++L L    +   
Sbjct: 90  QFLQLETGA-----FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKI 144

Query: 246 PP-LLSANFSSLKALHLAINNFDN-------SLFQYGSWVFGLRNLVFIDLSSNQFQGQI 297
            P     N      L L  N   +       +       +  L ++   D++      + 
Sbjct: 145 QPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEK 204

Query: 298 PIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAW-NSLQGTISSVGLENLTSI 356
                  TS+  LDL  N F  +             +     ++     SS G  N    
Sbjct: 205 CGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDP 264

Query: 357 ETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLS 416
           +     G                 + + DLS   +      V   F+      LE L L+
Sbjct: 265 DNFTFKGLEAS------------GVKTCDLSKSKIFALLKSVFSHFTD-----LEQLTLA 307

Query: 417 ICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPP-ALGELSSLKKLDLSNNMLNGFIPLS 475
             +I+    N       L  L L  N L G +       L  L+ LDLS N +      S
Sbjct: 308 QNEINKIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRALGDQS 366

Query: 476 LGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSL 517
              L +L+ L L  N+L  S+ +  F  LT L       N  
Sbjct: 367 FLGLPNLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 98.7 bits (246), Expect = 3e-22
 Identities = 61/335 (18%), Positives = 109/335 (32%), Gaps = 52/335 (15%)

Query: 230 PSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVF-GLRNLVFIDL 288
             +  + L+   +        +    L+ L +        +    +  F GL +L+ + L
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVI---RNNTFRGLSSLIILKL 86

Query: 289 SSNQFQGQIPIG-LRNLTSLRHLDLRFNYFNSTT--PGWLSKFNDLEFLSVAWNSLQGTI 345
             NQF  Q+  G    L +L  L L     +       +      LE L +  N+++   
Sbjct: 87  DYNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQ 145

Query: 346 SSVGLENLTSIETLDLSGN---------------------------------SKLGGKIP 372
            +    N+     LDL+ N                                   LG +  
Sbjct: 146 PASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKC 205

Query: 373 TSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQL---- 428
            +  +   +T++DLS     +  ++      +        L  S    S           
Sbjct: 206 GNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPD 265

Query: 429 ------LQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHL 482
                 L+   + T +L  + +F  L       + L++L L+ N +N     +   L+HL
Sbjct: 266 NFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL 325

Query: 483 EYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSL 517
             L+LS N L  S+    F NL KL     S N +
Sbjct: 326 LKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHI 359

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 77.5 bits (191), Expect = 3e-15
 Identities = 53/285 (18%), Positives = 98/285 (34%), Gaps = 29/285 (10%)

Query: 124 DLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLS 183
            L  L  L L  N+ + IQ   +  ++     L+L+  K   +    L N     +  L 
Sbjct: 127 PLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLR 186

Query: 184 GTFLSNYDLHVDSLSWLS-----GLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLT 238
            + ++  D++   L W           +  LDLS     ++       +++   K+  L 
Sbjct: 187 LSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRF-FDAIAGTKIQSLI 245

Query: 239 KCQLCHFPPLLSAN--------------FSSLKALHLAINNFDNSLFQYGSWVF-GLRNL 283
                +                       S +K   L+     + +F     VF    +L
Sbjct: 246 LSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLS----KSKIFALLKSVFSHFTDL 301

Query: 284 VFIDLSSNQFQGQIPIG-LRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQ 342
             + L+ N+   +I       LT L  L+L  N+  S         + LE L +++N ++
Sbjct: 302 EQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR 360

Query: 343 GTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLS 387
             +       L +++ L L  N +L       F RL  L  + L 
Sbjct: 361 -ALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLH 403

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 35/141 (24%), Positives = 55/141 (39%), Gaps = 8/141 (5%)

Query: 127 HLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTF 186
            +   DLS +    +          +L  L L+  +   +       L++L  L+LS  F
Sbjct: 276 GVKTCDLSKSKIFALL-KSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF 334

Query: 187 LSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFP 246
           L +  +       L  L   E LDLS  ++    D       LP+LK L L   QL   P
Sbjct: 335 LGS--IDSRMFENLDKL---EVLDLSYNHIRALGDQSF--LGLPNLKELALDTNQLKSVP 387

Query: 247 PLLSANFSSLKALHLAINNFD 267
             +    +SL+ + L  N +D
Sbjct: 388 DGIFDRLTSLQKIWLHTNPWD 408

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  103 bits (258), Expect = 1e-23
 Identities = 69/400 (17%), Positives = 129/400 (32%), Gaps = 73/400 (18%)

Query: 118 VNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNL 177
           +NP  V    L       ++    ++P    ++++      + +++    P   G    +
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT--EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM 60

Query: 178 QYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKL 237
               L                          L+L+ + LS       +    P L+ L  
Sbjct: 61  AVSRLRDCLDRQ----------------AHELELNNLGLSS------LPELPPHLESLVA 98

Query: 238 TKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQI 297
           +   L   P L   +  SL   +  +    +              L ++ +S+NQ +   
Sbjct: 99  SCNSLTELPELPQ-SLKSLLVDNNNLKALSDL----------PPLLEYLGVSNNQLEKLP 147

Query: 298 PIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIE 357
            +   N + L+ +D+  N      P        LEF++   N L+  +  +   NL  + 
Sbjct: 148 ELQ--NSSFLKIIDVDNNSL-KKLPDLPPS---LEFIAAGNNQLE-ELPELQ--NLPFLT 198

Query: 358 TLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSI 417
            +    N      +         L S+      L +     L    +     L ++    
Sbjct: 199 AIYADNN-----SLKKLPDLPLSLESIVAGNNILEE-----LPELQNL--PFLTTIYADN 246

Query: 418 CQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLG 477
             +   L +      SL  L +  N L   LP       SL  LD+S N+ +G   L   
Sbjct: 247 NLLK-TLPDLP---PSLEALNVRDNYL-TDLPE---LPQSLTFLDVSENIFSGLSEL--- 295

Query: 478 KLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSL 517
              +L YL+ S+N++  SL +        L   + S N L
Sbjct: 296 -PPNLYYLNASSNEIR-SLCD----LPPSLEELNVSNNKL 329

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 98.1 bits (245), Expect = 5e-22
 Identities = 80/423 (18%), Positives = 138/423 (32%), Gaps = 92/423 (21%)

Query: 124 DLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLS 183
              HL  L  S N     ++P+   SL++L   N +    + + P        L+YL +S
Sbjct: 89  LPPHLESLVASCNSLT--ELPELPQSLKSLLVDNNNLKALSDLPP-------LLEYLGVS 139

Query: 184 GTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLC 243
              L         L  L     L+ +D+   +L K      + +  PSL+ +     QL 
Sbjct: 140 NNQLE-------KLPELQNSSFLKIIDVDNNSLKK------LPDLPPSLEFIAAGNNQLE 186

Query: 244 HFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRN 303
             P L   N   L A++   N+    L           +L  I   +N  +      L+N
Sbjct: 187 ELPEL--QNLPFLTAIYADNNSL-KKLPD------LPLSLESIVAGNNILE--ELPELQN 235

Query: 304 LTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSG 363
           L  L  +    N    T P        LE L+V  N L         ++LT ++  +   
Sbjct: 236 LPFLTTIYADNNLL-KTLPDLPPS---LEALNVRDNYLTDLPEL--PQSLTFLDVSENIF 289

Query: 364 NSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQIS-- 421
           +      +      L  L +    +  L                  LE L++S  ++   
Sbjct: 290 SG-----LSELPPNLYYLNASSNEIRSLCDLPPS------------LEELNVSNNKLIEL 332

Query: 422 ----GHLT------NQL----LQFKSLHTLELGHNSL--FGPLPPALGEL---------- 455
                 L       N L       ++L  L + +N L  F  +P ++ +L          
Sbjct: 333 PALPPRLERLIASFNHLAEVPELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVP 392

Query: 456 ---SSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSA 512
               +LK+L +  N L    P     +   E L +++ ++     E       KL     
Sbjct: 393 ELPQNLKQLHVETNPLR-EFPDIPESV---EDLRMNSERVV-DPYEFAHETTDKLEDDVF 447

Query: 513 SGN 515
             +
Sbjct: 448 EHH 450

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  101 bits (254), Expect = 3e-23
 Identities = 53/237 (22%), Positives = 87/237 (36%), Gaps = 9/237 (3%)

Query: 281 RNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNS 340
            N   ++L  NQ Q       ++L  L  L L  N+  +   G  +   +L  L +  N 
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123

Query: 341 LQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLD 400
           L  TI +     L+ ++ L L  N  +      +F R+  L  +DL  +      S+   
Sbjct: 124 LT-TIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSYISE--G 179

Query: 401 TFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKK 460
            F       L  L+L++C +       L     L  L+L  N L    P +   L  L+K
Sbjct: 180 AFEGLSN--LRYLNLAMCNLRE--IPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQK 235

Query: 461 LDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSL 517
           L +  + +      +   L  L  ++L++N L   L    F  L  L       N  
Sbjct: 236 LWMIQSQIQVIERNAFDNLQSLVEINLAHNNL-TLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 93.7 bits (233), Expect = 1e-20
 Identities = 57/241 (23%), Positives = 92/241 (38%), Gaps = 21/241 (8%)

Query: 151 ENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLD 210
            N R LNL   +   +      +L +L+ L LS   +    + + +    +GL  L  L+
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRT--IEIGA---FNGLANLNTLE 118

Query: 211 LSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINN----F 266
           L    L+   +       L  LK L L    +   P        SL+ L L         
Sbjct: 119 LFDNRLTTIPNGAF--VYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYI 176

Query: 267 DNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLS 326
               F+      GL NL +++L+    + +IP  L  L  L  LDL  N+ ++  PG   
Sbjct: 177 SEGAFE------GLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQ 228

Query: 327 KFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDL 386
               L+ L +  + +Q  I     +NL S+  ++L+ N  L       F  L  L  + L
Sbjct: 229 GLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHL 286

Query: 387 S 387
            
Sbjct: 287 H 287

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 86.0 bits (213), Expect = 4e-18
 Identities = 59/245 (24%), Positives = 93/245 (37%), Gaps = 21/245 (8%)

Query: 230 PSLKVLKLTKCQLCHFPPLLSANFSSLKALHLA---INNFDNSLFQYGSWVFGLRNLVFI 286
            + ++L L + Q+         +   L+ L L+   I   +   F       GL NL  +
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFN------GLANLNTL 117

Query: 287 DLSSNQFQGQIPIG-LRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVA-WNSLQGT 344
           +L  N+    IP G    L+ L+ L LR N   S      ++   L  L +     L   
Sbjct: 118 ELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLS-Y 175

Query: 345 ISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSS 404
           IS    E L+++  L+L+  +    +IP     L KL  +DLS   LS            
Sbjct: 176 ISEGAFEGLSNLRYLNLAMCN--LREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMH 232

Query: 405 CGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLS 464
                L+ L +   QI     N     +SL  + L HN+L          L  L+++ L 
Sbjct: 233 -----LQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLH 287

Query: 465 NNMLN 469
           +N  N
Sbjct: 288 HNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 84.8 bits (210), Expect = 9e-18
 Identities = 55/227 (24%), Positives = 81/227 (35%), Gaps = 22/227 (9%)

Query: 121 SLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYL 180
           S   L+HL  L LS N    I+       L NL  L L   +   +       LS L+ L
Sbjct: 83  SFKHLRHLEILQLSRNHIRTIE-IGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKEL 141

Query: 181 DLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMN-LSKASDWLLVTNSLPSLKVLKLTK 239
            L    + +           + +  L  LDL ++  LS  S+       L +L+ L L  
Sbjct: 142 WLRNNPIESI-----PSYAFNRIPSLRRLDLGELKRLSYISEGAF--EGLSNLRYLNLAM 194

Query: 240 CQLCHFPPLLSANFSSLKALHLAINNF---DNSLFQYGSWVFGLRNLVFIDLSSNQFQGQ 296
           C L   P L       L  L L+ N+        FQ      GL +L  + +  +Q Q  
Sbjct: 195 CNLREIPNL--TPLIKLDELDLSGNHLSAIRPGSFQ------GLMHLQKLWMIQSQIQ-V 245

Query: 297 IPIG-LRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQ 342
           I      NL SL  ++L  N          +  + LE + +  N   
Sbjct: 246 IERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 59.8 bits (145), Expect = 1e-09
 Identities = 32/136 (23%), Positives = 49/136 (36%), Gaps = 8/136 (5%)

Query: 410 LESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLN 469
              L+L   QI     N     + L  L+L  N +      A   L++L  L+L +N L 
Sbjct: 66  TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT 125

Query: 470 GFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPF 529
                +   LS L+ L L NN +  S+    F  +  L          +   +      F
Sbjct: 126 TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGA---F 181

Query: 530 Q----LETLQLRSCHL 541
           +    L  L L  C+L
Sbjct: 182 EGLSNLRYLNLAMCNL 197

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 55.5 bits (134), Expect = 2e-08
 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 1/87 (1%)

Query: 431 FKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNN 490
             +   L L  N +      +   L  L+ L LS N +      +   L++L  L+L +N
Sbjct: 63  STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122

Query: 491 KLNASLSEIHFVNLTKLTWFSASGNSL 517
           +L  ++    FV L+KL       N +
Sbjct: 123 RL-TTIPNGAFVYLSKLKELWLRNNPI 148

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 45.1 bits (107), Expect = 4e-05
 Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 6/93 (6%)

Query: 120 PSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQY 179
           P+L  L  L  LDLSGN    I+ P     L +L+ L +  ++   +      NL +L  
Sbjct: 201 PNLTPLIKLDELDLSGNHLSAIR-PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVE 259

Query: 180 LDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLS 212
           ++L+   L+   L  D     + L+ LE + L 
Sbjct: 260 INLAHNNLTL--LPHDL---FTPLHHLERIHLH 287

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  100 bits (252), Expect = 5e-23
 Identities = 64/292 (21%), Positives = 104/292 (35%), Gaps = 47/292 (16%)

Query: 230 PSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDN---SLFQYGSWVFGLRNLVFI 286
                +  T+  L   P  +    S+ + L+L  NN        F+       L +L  +
Sbjct: 54  NQFSKVVCTRRGLSEVPQGI---PSNTRYLNLMENNIQMIQADTFR------HLHHLEVL 104

Query: 287 DLSSNQFQGQIPIG-LRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTI 345
            L  N  + QI +G    L SL  L+L  N+      G     + L  L +  N ++ +I
Sbjct: 105 QLGRNSIR-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SI 162

Query: 346 SSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSC 405
            S     + S+  LDL    KL      +F  L  L  ++L + ++       +   +  
Sbjct: 163 PSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-----MPNLT-- 215

Query: 406 GAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSN 465
                             L         L  LE+  N      P +   LSSLKKL + N
Sbjct: 216 -----------------PLVG-------LEELEMSGNHFPEIRPGSFHGLSSLKKLWVMN 251

Query: 466 NMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSL 517
           + ++     +   L+ L  L+L++N L +SL    F  L  L       N  
Sbjct: 252 SQVSLIERNAFDGLASLVELNLAHNNL-SSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 92.9 bits (231), Expect = 2e-20
 Identities = 56/265 (21%), Positives = 92/265 (34%), Gaps = 25/265 (9%)

Query: 127 HLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTF 186
               +  +       ++P+ +    N RYLNL       +      +L +L+ L L    
Sbjct: 55  QFSKVVCTRRGLS--EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS 110

Query: 187 LSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFP 246
           +    + V +    +GL  L  L+L    L+           L  L+ L L    +   P
Sbjct: 111 IRQ--IEVGA---FNGLASLNTLELFDNWLTVIPSGAF--EYLSKLRELWLRNNPIESIP 163

Query: 247 PLLSANFSSLKALHLAINN----FDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLR 302
                   SL  L L             F+      GL NL +++L     +  +P  L 
Sbjct: 164 SYAFNRVPSLMRLDLGELKKLEYISEGAFE------GLFNLKYLNLGMCNIK-DMP-NLT 215

Query: 303 NLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLS 362
            L  L  L++  N+F    PG     + L+ L V  + +   I     + L S+  L+L+
Sbjct: 216 PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLA 274

Query: 363 GNSKLGGKIPTSFARLCKLTSVDLS 387
            N  L       F  L  L  + L 
Sbjct: 275 HN-NLSSLPHDLFTPLRYLVELHLH 298

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 85.6 bits (212), Expect = 6e-18
 Identities = 56/245 (22%), Positives = 87/245 (35%), Gaps = 21/245 (8%)

Query: 230 PSLKVLKLTKCQLCHFPPLLSANFSSLKALHLA---INNFDNSLFQYGSWVFGLRNLVFI 286
            + + L L +  +         +   L+ L L    I   +   F       GL +L  +
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFN------GLASLNTL 128

Query: 287 DLSSNQFQGQIPIG-LRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVA-WNSLQGT 344
           +L  N     IP G    L+ LR L LR N   S      ++   L  L +     L+  
Sbjct: 129 ELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLE-Y 186

Query: 345 ISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSS 404
           IS    E L +++ L+L   +     +P     L  L  +++S     +         SS
Sbjct: 187 ISEGAFEGLFNLKYLNLGMCNIK--DMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSS 243

Query: 405 CGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLS 464
                L+ L +   Q+S    N      SL  L L HN+L          L  L +L L 
Sbjct: 244 -----LKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLH 298

Query: 465 NNMLN 469
           +N  N
Sbjct: 299 HNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 82.9 bits (205), Expect = 4e-17
 Identities = 50/227 (22%), Positives = 77/227 (33%), Gaps = 22/227 (9%)

Query: 121 SLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYL 180
           +   L HL  L L  N    I+       L +L  L L       +       LS L+ L
Sbjct: 94  TFRHLHHLEVLQLGRNSIRQIE-VGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLREL 152

Query: 181 DLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMN-LSKASDWLLVTNSLPSLKVLKLTK 239
            L    + +           + +  L  LDL ++  L   S+       L +LK L L  
Sbjct: 153 WLRNNPIESI-----PSYAFNRVPSLMRLDLGELKKLEYISEGAF--EGLFNLKYLNLGM 205

Query: 240 CQLCHFPPLLSANFSSLKALHLAINNF---DNSLFQYGSWVFGLRNLVFIDLSSNQFQGQ 296
           C +   P L       L+ L ++ N+F       F       GL +L  + + ++Q    
Sbjct: 206 CNIKDMPNL--TPLVGLEELEMSGNHFPEIRPGSFH------GLSSLKKLWVMNSQVS-L 256

Query: 297 IPIG-LRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQ 342
           I       L SL  L+L  N  +S      +    L  L +  N   
Sbjct: 257 IERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 61.7 bits (150), Expect = 2e-10
 Identities = 41/159 (25%), Positives = 64/159 (40%), Gaps = 2/159 (1%)

Query: 383 SVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHN 442
             +   ++L ++  Q++   +    + LE L L    I            SL+TLEL  N
Sbjct: 74  PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133

Query: 443 SLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFV 502
            L      A   LS L++L L NN +      +  ++  L  LDL   K    +SE  F 
Sbjct: 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFE 193

Query: 503 NLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHL 541
            L  L + +    +  +K  PN  P   LE L++   H 
Sbjct: 194 GLFNLKYLNLGMCN--IKDMPNLTPLVGLEELEMSGNHF 230

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 6/93 (6%)

Query: 120 PSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQY 179
           P+L  L  L  L++SGN F  I+ P     L +L+ L +  ++ + +       L++L  
Sbjct: 212 PNLTPLVGLEELEMSGNHFPEIR-PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVE 270

Query: 180 LDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLS 212
           L+L+   LS+  L  D     + L  L  L L 
Sbjct: 271 LNLAHNNLSS--LPHDL---FTPLRYLVELHLH 298

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 98.3 bits (245), Expect = 1e-22
 Identities = 59/272 (21%), Positives = 104/272 (38%), Gaps = 17/272 (6%)

Query: 230 PSLKVLKLTKCQLCHFPPLLSANFSSLKALHLA---INNFDNSLFQYGSWVFGLRNLVFI 286
            ++K L L+  ++ +          +L+AL L    IN  +   F        L +L  +
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFS------SLGSLEHL 105

Query: 287 DLSSNQFQGQIPIGL-RNLTSLRHLDLRFNYFNSTTP-GWLSKFNDLEFLSVAWNSLQGT 344
           DLS N     +     + L+SL  L+L  N + +       S    L+ L V        
Sbjct: 106 DLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTK 164

Query: 345 ISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSS 404
           I       LT +E L++  +  L    P S   +  ++ + L +          +D  SS
Sbjct: 165 IQRKDFAGLTFLEELEIDAS-DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSS 223

Query: 405 CGAYALESLDLSICQ---ISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKL 461
                L   DL       +S   TN L++  +   +++   SLF  +   L ++S L +L
Sbjct: 224 VECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLEL 282

Query: 462 DLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLN 493
           + S N L         +L+ L+ + L  N  +
Sbjct: 283 EFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 80.2 bits (198), Expect = 2e-16
 Identities = 54/264 (20%), Positives = 93/264 (35%), Gaps = 16/264 (6%)

Query: 285 FIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGT 344
               SS      IP GL    +++ LDL  N     +   L +  +L+ L +  N +  T
Sbjct: 35  ICKGSSGSLN-SIPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-T 90

Query: 345 ISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSS 404
           I      +L S+E LDLS N  L     + F  L  LT ++L        +  + +T   
Sbjct: 91  IEEDSFSSLGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLNLL----GNPYKTLGETSLF 145

Query: 405 CGAYALESLDLSICQISGHLTNQLLQ-FKSLHTLELGHNSLFGPLPPALGELSSLKKLDL 463
                L+ L +        +  +       L  LE+  + L    P +L  + ++  L L
Sbjct: 146 SHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL 205

Query: 464 SNNMLNGFIPLSLGKLSHLEYLDLSNNKLNA----SLSEIHFVNLTKLTWFSASGNSL-- 517
                   + + +   S +E L+L +  L+      LS     +L K   F     +   
Sbjct: 206 HMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDES 265

Query: 518 ILKFNPNWVPPFQLETLQLRSCHL 541
           + +          L  L+     L
Sbjct: 266 LFQVMKLLNQISGLLELEFSRNQL 289

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 75.5 bits (186), Expect = 5e-15
 Identities = 46/253 (18%), Positives = 91/253 (35%), Gaps = 23/253 (9%)

Query: 122 LVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLD 181
           L    +L  L L+ N    I+      SL +L +L+LS    + +       LS+L +L+
Sbjct: 72  LQRCVNLQALVLTSNGINTIE-EDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN 130

Query: 182 LSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMN-LSKASDWLLVTNSLPSLKVLKLTKC 240
           L G         +   S  S L  L+ L +  M+  +K          L  L+ L++   
Sbjct: 131 LLGNPYKT----LGETSLFSHLTKLQILRVGNMDTFTKIQRKDF--AGLTFLEELEIDAS 184

Query: 241 QLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVF-GLRNLVFIDLSSNQFQG---- 295
            L  + P    +  ++  L L +                   ++  ++L           
Sbjct: 185 DLQSYEPKSLKSIQNVSHLILHMKQHIL----LLEIFVDVTSSVECLELRDTDLDTFHFS 240

Query: 296 QIPIG----LRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLE 351
           ++  G    L    + R++ +            L++ + L  L  + N L+ ++     +
Sbjct: 241 ELSTGETNSLIKKFTFRNVKITDESLFQ-VMKLLNQISGLLELEFSRNQLK-SVPDGIFD 298

Query: 352 NLTSIETLDLSGN 364
            LTS++ + L  N
Sbjct: 299 RLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 58.6 bits (142), Expect = 2e-09
 Identities = 30/149 (20%), Positives = 68/149 (45%), Gaps = 7/149 (4%)

Query: 122 LVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLD 181
              L  L  L++  +D +  + PK L S++N+ +L L   +   ++ + +   S+++ L+
Sbjct: 170 FAGLTFLEELEIDASDLQSYE-PKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLE 228

Query: 182 LSGTFLSNY---DLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLT 238
           L  T L  +   +L     + L   +   ++ ++  +L      + + N +  L  L+ +
Sbjct: 229 LRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL---FQVMKLLNQISGLLELEFS 285

Query: 239 KCQLCHFPPLLSANFSSLKALHLAINNFD 267
           + QL   P  +    +SL+ + L  N +D
Sbjct: 286 RNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 96.6 bits (241), Expect = 2e-22
 Identities = 62/271 (22%), Positives = 95/271 (35%), Gaps = 36/271 (13%)

Query: 226 TNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVF 285
           T    S   L+L   +L   P  +    + L  L L+ N          S  FG  +L +
Sbjct: 24  TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD-FGTTSLKY 82

Query: 286 IDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTP-GWLSKFNDLEFLSVAWNSLQGT 344
           +DLS N     +      L  L HLD + +     +         +L +L ++    +  
Sbjct: 83  LDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-V 140

Query: 345 ISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSS 404
             +     L+S+E L ++GNS     +P  F  L                          
Sbjct: 141 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL-------------------------- 174

Query: 405 CGAYALESLDLSICQISGHLTNQLLQF-KSLHTLELGHNSLFGPLPPALGELSSLKKLDL 463
                L  LDLS CQ+   L+        SL  L + HN+ F         L+SL+ LD 
Sbjct: 175 ---RNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 230

Query: 464 SNNMLNGFIPLSLGKL-SHLEYLDLSNNKLN 493
           S N +       L    S L +L+L+ N   
Sbjct: 231 SLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 91.2 bits (227), Expect = 2e-20
 Identities = 60/247 (24%), Positives = 93/247 (37%), Gaps = 38/247 (15%)

Query: 121 SLVDLKHLIHLDLSGNDFEGIQIPKY-LGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQY 179
               L  L  L LS N                +L+YL+LS       +      L  L++
Sbjct: 47  VFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEH 105

Query: 180 LDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTK 239
           LD   + L      +   S    L  L +LD+S  +   A + +   N L SL+VLK+  
Sbjct: 106 LDFQHSNLK----QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF--NGLSSLEVLKMAG 159

Query: 240 CQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPI 299
                                    NF   +F        LRNL F+DLS  Q + Q+  
Sbjct: 160 NSF--------------------QENFLPDIFT------ELRNLTFLDLSQCQLE-QLSP 192

Query: 300 G-LRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENL-TSIE 357
               +L+SL+ L++  N F S         N L+ L  + N +  T     L++  +S+ 
Sbjct: 193 TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLA 251

Query: 358 TLDLSGN 364
            L+L+ N
Sbjct: 252 FLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 91.2 bits (227), Expect = 2e-20
 Identities = 48/241 (19%), Positives = 84/241 (34%), Gaps = 22/241 (9%)

Query: 130 HLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSN 189
            +  +        +P  +    +   L L   K   +       L+ L  L LS   LS 
Sbjct: 11  EIRCNSKGLT--SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF 66

Query: 190 YDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLL 249
                 S     G   L++LDLS   +   S        L  L+ L      L       
Sbjct: 67  KGCCSQS---DFGTTSLKYLDLSFNGVITMSS---NFLGLEQLEHLDFQHSNLKQMSEFS 120

Query: 250 S-ANFSSLKALHLAINN---FDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIG-LRNL 304
              +  +L  L ++  +     N +F       GL +L  + ++ N FQ          L
Sbjct: 121 VFLSLRNLIYLDISHTHTRVAFNGIFN------GLSSLEVLKMAGNSFQENFLPDIFTEL 174

Query: 305 TSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGN 364
            +L  LDL        +P   +  + L+ L+++ N+   ++ +   + L S++ LD S N
Sbjct: 175 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLN 233

Query: 365 S 365
            
Sbjct: 234 H 234

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 77.0 bits (190), Expect = 1e-15
 Identities = 52/202 (25%), Positives = 84/202 (41%), Gaps = 19/202 (9%)

Query: 119 NPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQL-GNLSNL 177
           + S      L +LDLS N    I +      LE L +L+   +    M    +  +L NL
Sbjct: 71  SQSDFGTTSLKYLDLSFNGV--ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 128

Query: 178 QYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKL 237
            YLD+S T        V      +GL  LE L ++  +  +     + T  L +L  L L
Sbjct: 129 IYLDISHT-----HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE-LRNLTFLDL 182

Query: 238 TKCQLCHFPPLLSANFSSLKALHLA---INNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQ 294
           ++CQL    P    + SSL+ L+++     + D   ++       L +L  +D S N   
Sbjct: 183 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK------CLNSLQVLDYSLNHIM 236

Query: 295 GQIPIGLRNL-TSLRHLDLRFN 315
                 L++  +SL  L+L  N
Sbjct: 237 TSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 76.6 bits (189), Expect = 2e-15
 Identities = 43/165 (26%), Positives = 67/165 (40%), Gaps = 6/165 (3%)

Query: 354 TSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESL 413
           +S   L+L  N KL       F +L +LT + LS   LS    +   + S  G  +L+ L
Sbjct: 28  SSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSNGLS---FKGCCSQSDFGTTSLKYL 83

Query: 414 DLSICQISGHLTNQLLQFKSLHTLELGHNSLFG-PLPPALGELSSLKKLDLSNNMLNGFI 472
           DLS   +   +++  L  + L  L+  H++L           L +L  LD+S+       
Sbjct: 84  DLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 142

Query: 473 PLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSL 517
                 LS LE L ++ N    +     F  L  LT+   S   L
Sbjct: 143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 71.6 bits (176), Expect = 8e-14
 Identities = 43/177 (24%), Positives = 73/177 (41%), Gaps = 8/177 (4%)

Query: 118 VNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNL 177
           ++ + + L+ L HLD   ++ + +       SL NL YL++S              LS+L
Sbjct: 93  MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 152

Query: 178 QYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKL 237
           + L ++G    N           + L  L  LDLSQ  L + S      NSL SL+VL +
Sbjct: 153 EVLKMAG----NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF--NSLSSLQVLNM 206

Query: 238 TKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQ 294
           +               +SL+ L  ++N+      +         +L F++L+ N F 
Sbjct: 207 SHNNFFSLDTFPYKCLNSLQVLDYSLNHI--MTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 34/137 (24%), Positives = 55/137 (40%), Gaps = 12/137 (8%)

Query: 122 LVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLD 181
              L  L  L ++GN F+   +P     L NL +L+LS  +   + P    +LS+LQ L+
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205

Query: 182 LSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTK-- 239
           +S     + D           L  L+ LD S  ++  +    L  +   SL  L LT+  
Sbjct: 206 MSHNNFFSLDTFP-----YKCLNSLQVLDYSLNHIMTSKKQEL-QHFPSSLAFLNLTQND 259

Query: 240 ----CQLCHFPPLLSAN 252
               C+   F   +   
Sbjct: 260 FACTCEHQSFLQWIKDQ 276

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 95.1 bits (237), Expect = 1e-21
 Identities = 67/367 (18%), Positives = 128/367 (34%), Gaps = 71/367 (19%)

Query: 127 HLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTF 186
           HL  +  S        +PK +    +   L+L     + +       L +L  L L    
Sbjct: 34  HLRVVQCSDLGL--KAVPKEISP--DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK 89

Query: 187 LSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFP 246
           +S   +H  + S    L  L+ L +S+ +L +     +  N   SL  L++   ++   P
Sbjct: 90  ISK--IHEKAFS---PLRKLQKLYISKNHLVE-----IPPNLPSSLVELRIHDNRIRKVP 139

Query: 247 PLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTS 306
             + +   ++  + +  N  +NS F+ G   F    L ++ +S  +    IP  L    +
Sbjct: 140 KGVFSGLRNMNCIEMGGNPLENSGFEPG--AFDGLKLNYLRISEAKLT-GIPKDL--PET 194

Query: 307 LRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSK 366
           L  L L  N   +     L +++ L  L +  N ++  I +  L  L ++  L L  N  
Sbjct: 195 LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNN-- 251

Query: 367 LGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTN 426
                        KL+ V   L DL                  L+ + L         TN
Sbjct: 252 -------------KLSRVPAGLPDLKL----------------LQVVYLH--------TN 274

Query: 427 QLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFI--PLSLGKLSHLEY 484
            + +            + F P+   + + +    + L NN +  +   P +   ++    
Sbjct: 275 NITKV---------GVNDFCPVGFGV-KRAYYNGISLFNNPVPYWEVQPATFRCVTDRLA 324

Query: 485 LDLSNNK 491
           +   N K
Sbjct: 325 IQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 89.3 bits (222), Expect = 1e-19
 Identities = 43/256 (16%), Positives = 81/256 (31%), Gaps = 30/256 (11%)

Query: 121 SLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYL 180
           +   L+ L  L +S N    I          +L  L +   +   +       L N+  +
Sbjct: 97  AFSPLRKLQKLYISKNHLVEIP----PNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCI 152

Query: 181 DLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKC 240
           ++ G  L N      +   L     L +L +S+  L+      +  +   +L  L L   
Sbjct: 153 EMGGNPLENSGFEPGAFDGLK----LNYLRISEAKLTG-----IPKDLPETLNELHLDHN 203

Query: 241 QLCHFPPLLSANFSSLKALHLA---INNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQI 297
           ++          +S L  L L    I   +N           L  L  + L +N+   ++
Sbjct: 204 KIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS------FLPTLRELHLDNNKLS-RV 256

Query: 298 PIGLRNLTSLRHLDLRFNYFNSTTPG------WLSKFNDLEFLSVAWNSLQ-GTISSVGL 350
           P GL +L  L+ + L  N              +  K      +S+  N +    +     
Sbjct: 257 PAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATF 316

Query: 351 ENLTSIETLDLSGNSK 366
             +T    +      K
Sbjct: 317 RCVTDRLAIQFGNYKK 332

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 83.9 bits (208), Expect = 7e-18
 Identities = 55/290 (18%), Positives = 99/290 (34%), Gaps = 50/290 (17%)

Query: 231 SLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNF---DNSLFQYGSWVFGLRNLVFID 287
            L+V++ +   L   P  +S +      L L  N+        F+      GL++L  + 
Sbjct: 34  HLRVVQCSDLGLKAVPKEISPD---TTLLDLQNNDISELRKDDFK------GLQHLYALV 84

Query: 288 LSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISS 347
           L +N+           L  L+ L +  N+     P      + L  L +  N ++  +  
Sbjct: 85  LVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPN---LPSSLVELRIHDNRIR-KVPK 140

Query: 348 VGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGA 407
                L ++  +++ GN                L +                  F     
Sbjct: 141 GVFSGLRNMNCIEMGGN---------------PLENSGFEP-----------GAFDGL-- 172

Query: 408 YALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNM 467
             L  L +S  +++  +   L   ++L+ L L HN +       L   S L +L L +N 
Sbjct: 173 -KLNYLRISEAKLT-GIPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ 228

Query: 468 LNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSL 517
           +      SL  L  L  L L NNKL + +      +L  L       N++
Sbjct: 229 IRMIENGSLSFLPTLRELHLDNNKL-SRVPA-GLPDLKLLQVVYLHTNNI 276

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 90.8 bits (226), Expect = 2e-20
 Identities = 46/238 (19%), Positives = 69/238 (28%), Gaps = 33/238 (13%)

Query: 281 RNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNS 340
                I L  N+         R   +L  L L  N          +    LE L ++ N+
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 341 LQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLD 400
              ++       L  + TL L                   L  +                
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRC---------------GLQELG-------------PG 123

Query: 401 TFSSCGAYALESLDLSICQISGHLTNQLLQF-KSLHTLELGHNSLFGPLPPALGELSSLK 459
            F   G  AL+ L L    +   L +   +   +L  L L  N +      A   L SL 
Sbjct: 124 LFR--GLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD 180

Query: 460 KLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSL 517
           +L L  N +    P +   L  L  L L  N L ++L       L  L +   + N  
Sbjct: 181 RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL-SALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 83.5 bits (207), Expect = 5e-18
 Identities = 52/218 (23%), Positives = 80/218 (36%), Gaps = 20/218 (9%)

Query: 152 NLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDL 211
             + + L G + + +         NL  L L    L+  D         +GL +LE LDL
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA-----FTGLALLEQLDL 87

Query: 212 SQ-MNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLA---INNFD 267
           S    L          + L  L  L L +C L    P L    ++L+ L+L    +    
Sbjct: 88  SDNAQLRSVDPATF--HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP 145

Query: 268 NSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIG-LRNLTSLRHLDLRFNYFNSTTPGWLS 326
           +  F+       L NL  + L  N+    +P    R L SL  L L  N      P    
Sbjct: 146 DDTFR------DLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR 198

Query: 327 KFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGN 364
               L  L +  N+L   + +  L  L +++ L L+ N
Sbjct: 199 DLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 69.6 bits (171), Expect = 2e-13
 Identities = 45/198 (22%), Positives = 63/198 (31%), Gaps = 16/198 (8%)

Query: 121 SLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQ-LGNLSNLQY 179
           S    ++L  L L  N    I        L  L  L+LS       +       L  L  
Sbjct: 51  SFRACRNLTILWLHSNVLARID-AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109

Query: 180 LDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTK 239
           L L    L      +       GL  L++L L    L    D       L +L  L L  
Sbjct: 110 LHLDRCGLQ----ELGP-GLFRGLAALQYLYLQDNALQALPDDTF--RDLGNLTHLFLHG 162

Query: 240 CQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVF-GLRNLVFIDLSSNQFQGQIP 298
            ++   P        SL  L L      N +       F  L  L+ + L +N     +P
Sbjct: 163 NRISSVPERAFRGLHSLDRLLLH----QNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALP 217

Query: 299 IG-LRNLTSLRHLDLRFN 315
              L  L +L++L L  N
Sbjct: 218 TEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 34/144 (23%), Positives = 49/144 (34%), Gaps = 8/144 (5%)

Query: 124 DLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLS 183
            L  L  L L     + +  P     L  L+YL L       +      +L NL +L L 
Sbjct: 103 GLGRLHTLHLDRCGLQELG-PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLH 161

Query: 184 GTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLC 243
           G  +S+            GL+ L+ L L Q  ++           L  L  L L    L 
Sbjct: 162 GNRISSVPERA-----FRGLHSLDRLLLHQNRVAHVHPHAF--RDLGRLMTLYLFANNLS 214

Query: 244 HFPPLLSANFSSLKALHLAINNFD 267
             P    A   +L+ L L  N + 
Sbjct: 215 ALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 20/87 (22%), Positives = 32/87 (36%)

Query: 431 FKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNN 490
             +   + L  N +      +     +L  L L +N+L      +   L+ LE LDLS+N
Sbjct: 31  PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 491 KLNASLSEIHFVNLTKLTWFSASGNSL 517
               S+    F  L +L         L
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGL 117

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 91.2 bits (227), Expect = 9e-20
 Identities = 79/439 (17%), Positives = 145/439 (33%), Gaps = 49/439 (11%)

Query: 126 KHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLS----GAKFAGMIPLQLGNLSNLQYLD 181
             +  LD+   +    +  + L  L+  + + L            I   L     L  L+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 182 LSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVT--NSLPSLKVLKLTK 239
           L    L +  +H       +    ++ L L    L+ A   +L +   +LP+L+ L L+ 
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 240 CQLC-----HFPPLLSANFSSLKALHLAINNFDNSLFQY-GSWVFGLRNLVFIDLSSNQF 293
             L           L      L+ L L   +   +  +   S +    +   + +S+N  
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182

Query: 294 QGQ----IPIGLRNLT-SLRHLDLRFNYFNSTTPGW------LSKFNDLEFLSVAWNSLQ 342
                  +  GL++    L  L L       T+         ++    L  L++  N L 
Sbjct: 183 NEAGVRVLCQGLKDSPCQLEALKLESCGV--TSDNCRDLCGIVASKASLRELALGSNKLG 240

Query: 343 GT----ISSVGLENLTSIETLDLSGNS---KLGGKIPTSFARLCKLTSVDLSLIDLSQDF 395
                 +    L   + + TL +       K  G +         L  + L+  +L  + 
Sbjct: 241 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG 300

Query: 396 SQVLDTFSSCGAYALESLDLSICQISG----HLTNQLLQFKSLHTLELGHNSLFGPLPPA 451
           +++L          LESL +  C  +     H ++ L Q + L  L++ +N L       
Sbjct: 301 ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE 360

Query: 452 LGEL-----SSLKKLDLSNNML--NGFIPLS--LGKLSHLEYLDLSNNKLNAS----LSE 498
           L +      S L+ L L++  +  +    L+  L     L  LDLSNN L  +    L E
Sbjct: 361 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE 420

Query: 499 IHFVNLTKLTWFSASGNSL 517
                   L          
Sbjct: 421 SVRQPGCLLEQLVLYDIYW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 53.0 bits (128), Expect = 1e-07
 Identities = 48/323 (14%), Positives = 84/323 (26%), Gaps = 71/323 (21%)

Query: 122 LVDLKHLIHLDLSGNDF--EGIQ-IPKYLGSLE-NLRYLNLS----GAKFAGMIPLQLGN 173
           L        L +S ND    G++ + + L      L  L L      +     +   + +
Sbjct: 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVAS 225

Query: 174 LSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVT--NSLPS 231
            ++L+ L L    L +  +       L     L  L + +  ++      L     +  S
Sbjct: 226 KASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKES 285

Query: 232 LKVLKLTKCQL-----CHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFI 286
           LK L L   +L           L      L++L +   +F  +                 
Sbjct: 286 LKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCS-------------- 331

Query: 287 DLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGT-- 344
             SS          L     L  L +                          N L+    
Sbjct: 332 HFSS---------VLAQNRFLLELQIS------------------------NNRLEDAGV 358

Query: 345 --ISSVGLENLTSIETLDLSGNSKLGGK----IPTSFARLCKLTSVDLSLIDLSQDFSQV 398
             +     +  + +  L L+    +       +  +      L  +DLS   L       
Sbjct: 359 RELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQ 417

Query: 399 LDTFSSCGAYALESLDLSICQIS 421
           L          LE L L     S
Sbjct: 418 LVESVRQPGCLLEQLVLYDIYWS 440

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 91.3 bits (226), Expect = 1e-19
 Identities = 49/258 (18%), Positives = 83/258 (32%), Gaps = 48/258 (18%)

Query: 279 GLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAW 338
                +  +L          +    L S+  +    +   S     +    ++  L +  
Sbjct: 19  AFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNG 74

Query: 339 NSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQV 398
           N L   I    L NL ++  L L  N     KI    + L  L                 
Sbjct: 75  NKLT-DIK--PLTNLKNLGWLFLDEN-----KI-KDLSSLKDLKK--------------- 110

Query: 399 LDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSL 458
                      L+SL L    IS  +   L+    L +L LG+N +       L  L+ L
Sbjct: 111 -----------LKSLSLEHNGIS-DING-LVHLPQLESLYLGNNKITDI--TVLSRLTKL 155

Query: 459 KKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLI 518
             L L +N ++  +PL+   L+ L+ L LS N + + L  +    L  L          +
Sbjct: 156 DTLSLEDNQISDIVPLA--GLTKLQNLYLSKNHI-SDLRALA--GLKNLDVLELFSQECL 210

Query: 519 LKFNPNWVPPFQLETLQL 536
            K   +        T++ 
Sbjct: 211 NKPINHQSNLVVPNTVKN 228

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 84.0 bits (207), Expect = 3e-17
 Identities = 46/244 (18%), Positives = 81/244 (33%), Gaps = 28/244 (11%)

Query: 122 LVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLD 181
                  I  +L                L ++  +  + +    +  +Q   L N+  L 
Sbjct: 17  DDAFAETIKDNLKKKSVTDA---VTQNELNSIDQIIANNSDIKSVQGIQ--YLPNVTKLF 71

Query: 182 LSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQ 241
           L+G  L++       +  L+ L  L  L L +  +   S        L  LK L L    
Sbjct: 72  LNGNKLTD-------IKPLTNLKNLGWLFLDENKIKDLSS----LKDLKKLKSLSLEHNG 120

Query: 242 LCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGL 301
           +     L   +   L++L+L  N   +      + +  L  L  + L  NQ    I   L
Sbjct: 121 ISDINGL--VHLPQLESLYLGNNKITDI-----TVLSRLTKLDTLSLEDNQIS-DIV-PL 171

Query: 302 RNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDL 361
             LT L++L L  N+ +      L+   +L+ L +               NL    T+  
Sbjct: 172 AGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECL-NKPINHQSNLVVPNTVKN 228

Query: 362 SGNS 365
           +  S
Sbjct: 229 TDGS 232

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 80.5 bits (198), Expect = 4e-16
 Identities = 47/260 (18%), Positives = 93/260 (35%), Gaps = 30/260 (11%)

Query: 251 ANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHL 310
             F+     +L   +  +++ Q       L ++  I  +++  +  +  G++ L ++  L
Sbjct: 18  DAFAETIKDNLKKKSVTDAVTQNE-----LNSIDQIIANNSDIK-SVQ-GIQYLPNVTKL 70

Query: 311 DLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGN--SKLG 368
            L  N      P  L+   +L +L +  N ++  +S   L++L  +++L L  N  S + 
Sbjct: 71  FLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLS--SLKDLKKLKSLSLEHNGISDI- 124

Query: 369 GKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQL 428
                    L +L S+ L    ++      +   S      L++L L   QIS  +   L
Sbjct: 125 ----NGLVHLPQLESLYLGNNKITD-----ITVLSRL--TKLDTLSLEDNQIS-DIVP-L 171

Query: 429 LQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLS 488
                L  L L  N +      AL  L +L  L+L +             L     +  +
Sbjct: 172 AGLTKLQNLYLSKNHI--SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNT 229

Query: 489 NNKLNASLSEIHFVNLTKLT 508
           +  L          +  K  
Sbjct: 230 DGSLVTPEIISDDGDYEKPN 249

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 77.8 bits (191), Expect = 3e-15
 Identities = 48/239 (20%), Positives = 89/239 (37%), Gaps = 41/239 (17%)

Query: 120 PSLVDLKHLIHLDLSGN---DFEGIQIPKYL----------------GSLENLRYLNLSG 160
            +  +L  +  +  + +     +GIQ    +                 +L+NL +L L  
Sbjct: 37  VTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDE 96

Query: 161 AKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKAS 220
            K   +  L+  +L  L+ L L    +S+       ++ L  L  LE L L    ++  +
Sbjct: 97  NKIKDLSSLK--DLKKLKSLSLEHNGISD-------INGLVHLPQLESLYLGNNKITDIT 147

Query: 221 DWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGL 280
                 + L  L  L L   Q+    PL  A  + L+ L+L+ N+  +        + GL
Sbjct: 148 V----LSRLTKLDTLSLEDNQISDIVPL--AGLTKLQNLYLSKNHISDL-----RALAGL 196

Query: 281 RNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWN 339
           +NL  ++L S +   +      NL     +        +  P  +S   D E  +V W+
Sbjct: 197 KNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT--PEIISDDGDYEKPNVKWH 253

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 91.1 bits (226), Expect = 2e-19
 Identities = 61/383 (15%), Positives = 119/383 (31%), Gaps = 72/383 (18%)

Query: 169 LQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNS 228
           ++    +    L++  + L+   L     + +        L +   NL+       +   
Sbjct: 34  MRACLNNGNAVLNVGESGLT--TLPDCLPAHI------TTLVIPDNNLTS------LPAL 79

Query: 229 LPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDL 288
            P L+ L+++  QL   P L       L      + +                 L  + +
Sbjct: 80  PPELRTLEVSGNQLTSLPVLPP-GLLELSIFSNPLTHLPALP----------SGLCKLWI 128

Query: 289 SSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSV 348
             NQ    +P        L+ L +  N   S         ++L  L    N L  ++   
Sbjct: 129 FGNQLT-SLP---VLPPGLQELSVSDNQLASLPAL----PSELCKLWAYNNQLT-SLP-- 177

Query: 349 GLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAY 408
                + ++ L +S N +L   +PT  + L KL + +  L  L    S            
Sbjct: 178 --MLPSGLQELSVSDN-QLA-SLPTLPSELYKLWAYNNRLTSLPALPSG----------- 222

Query: 409 ALESLDLSICQIS------GHLT------NQLLQF----KSLHTLELGHNSLFGPLPPAL 452
            L+ L +S  +++        L       N+L         L +L +  N L   LP +L
Sbjct: 223 -LKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQL-TRLPESL 280

Query: 453 GELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSA 512
             LSS   ++L  N L+     +L +++        +  +                   A
Sbjct: 281 IHLSSETTVNLEGNPLSERTLQALREITSAP---GYSGPIIRFDMAGASAPRETRALHLA 337

Query: 513 SGNSLILKFNPNWVPPFQLETLQ 535
           + + L+        P  +     
Sbjct: 338 AADWLVPAREGEPAPADRWHMFG 360

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 76.1 bits (187), Expect = 9e-15
 Identities = 54/325 (16%), Positives = 94/325 (28%), Gaps = 58/325 (17%)

Query: 120 PSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQY 179
                L  L            +           L  L + G +    +P+       LQ 
Sbjct: 98  VLPPGLLELSIFSNPLTHLPAL--------PSGLCKLWIFGNQLTS-LPVLPP---GLQE 145

Query: 180 LDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTK 239
           L +S   L+         S  +    L  L      L+       +      L+ L ++ 
Sbjct: 146 LSVSDNQLA---------SLPALPSELCKLWAYNNQLTS------LPMLPSGLQELSVSD 190

Query: 240 CQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPI 299
            QL   P L S     L A +  + +                 L  + +S N+    +P 
Sbjct: 191 NQLASLPTLPS-ELYKLWAYNNRLTSLPAL----------PSGLKELIVSGNRLT-SLP- 237

Query: 300 GLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETL 359
                + L+ L +  N   ++ P   S    L  LSV  N L   +    L +L+S  T+
Sbjct: 238 --VLPSELKELMVSGNRL-TSLPMLPSG---LLSLSVYRNQLT-RLPE-SLIHLSSETTV 289

Query: 360 DLSGNSKLGGKIPT-SFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSIC 418
           +L GN      +   +   L ++TS       + +             A  L + D    
Sbjct: 290 NLEGN-----PLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADW--- 341

Query: 419 QISGHLTNQLLQFKSLHTLELGHNS 443
            +      +       H      N+
Sbjct: 342 -LVPAREGEPAPADRWHMFGQEDNA 365

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 82.0 bits (203), Expect = 2e-17
 Identities = 56/244 (22%), Positives = 98/244 (40%), Gaps = 32/244 (13%)

Query: 122 LVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLD 181
              L + I +    ++            L+ +  L+  G     +  +Q   L+NL  L+
Sbjct: 15  DPALANAIKIAAGKSNVTDT---VTQADLDGITTLSAFGTGVTTIEGVQ--YLNNLIGLE 69

Query: 182 LSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQ 241
           L    +++       L+ L  L  +  L+LS   L      +     L S+K L LT  Q
Sbjct: 70  LKDNQITD-------LAPLKNLTKITELELSGNPLKN----VSAIAGLQSIKTLDLTSTQ 118

Query: 242 LCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGL 301
           +    PL  A  S+L+ L+L +N   N      S + GL NL ++ + + Q    +   L
Sbjct: 119 ITDVTPL--AGLSNLQVLYLDLNQITNI-----SPLAGLTNLQYLSIGNAQVS-DLT-PL 169

Query: 302 RNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSV-GLENLTSIETLD 360
            NL+ L  L    N  +  +P  L+   +L  + +  N     IS V  L N +++  + 
Sbjct: 170 ANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQ----ISDVSPLANTSNLFIVT 223

Query: 361 LSGN 364
           L+  
Sbjct: 224 LTNQ 227

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 77.0 bits (190), Expect = 1e-15
 Identities = 46/219 (21%), Positives = 89/219 (40%), Gaps = 24/219 (10%)

Query: 299 IGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIET 358
                L +   +    +    T     +  + +  LS     +  TI   G++ L ++  
Sbjct: 13  FPDPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIE--GVQYLNNLIG 67

Query: 359 LDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSIC 418
           L+L  N     +I T  A L  LT   ++ ++LS +  + +   +     ++++LDL+  
Sbjct: 68  LELKDN-----QI-TDLAPLKNLTK--ITELELSGNPLKNVSAIAGLQ--SIKTLDLTST 117

Query: 419 QISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGK 478
           QI+      L    +L  L L  N +       L  L++L+ L + N  ++   PL+   
Sbjct: 118 QITD--VTPLAGLSNLQVLYLDLNQITN--ISPLAGLTNLQYLSIGNAQVSDLTPLA--N 171

Query: 479 LSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSL 517
           LS L  L   +NK++  +S +   +L  L       N +
Sbjct: 172 LSKLTTLKADDNKIS-DISPLA--SLPNLIEVHLKNNQI 207

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 74.3 bits (183), Expect = 9e-15
 Identities = 51/245 (20%), Positives = 97/245 (39%), Gaps = 27/245 (11%)

Query: 120 PSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQY 179
            +  DL  +  L   G     I+    +  L NL  L L   +   + P  L NL+ +  
Sbjct: 35  VTQADLDGITTLSAFGTGVTTIEG---VQYLNNLIGLELKDNQITDLAP--LKNLTKITE 89

Query: 180 LDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTK 239
           L+LSG  L N       +S ++GL  ++ LDL+   ++  +        L +L+VL L  
Sbjct: 90  LELSGNPLKN-------VSAIAGLQSIKTLDLTSTQITDVTP----LAGLSNLQVLYLDL 138

Query: 240 CQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPI 299
            Q+ +  PL  A  ++L+ L +      +      + +  L  L  +    N+    I  
Sbjct: 139 NQITNISPL--AGLTNLQYLSIGNAQVSDL-----TPLANLSKLTTLKADDNKIS-DIS- 189

Query: 300 GLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETL 359
            L +L +L  + L+ N  +  +P  L+  ++L  +++   ++           +      
Sbjct: 190 PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVK 247

Query: 360 DLSGN 364
             SG 
Sbjct: 248 GPSGA 252

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 71.3 bits (175), Expect = 1e-13
 Identities = 46/266 (17%), Positives = 91/266 (34%), Gaps = 30/266 (11%)

Query: 228 SLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDN-SLFQYGSWVFGLRNLVFI 286
           +L +   +   K  +        A+   +  L             QY      L NL+ +
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQ--ADLDGITTLSAFGTGVTTIEGVQY------LNNLIGL 68

Query: 287 DLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTIS 346
           +L  NQ     P+   NLT +  L+L  N   + +   ++    ++ L +    +     
Sbjct: 69  ELKDNQITDLAPLK--NLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVT- 123

Query: 347 SVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCG 406
              L  L++++ L L  N     +I T+ + L  LT+  L  + +       L   ++  
Sbjct: 124 --PLAGLSNLQVLYLDLN-----QI-TNISPLAGLTN--LQYLSIGNAQVSDLTPLANLS 173

Query: 407 AYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNN 466
              L +L     +IS    + L    +L  + L +N +       L   S+L  + L+N 
Sbjct: 174 K--LTTLKADDNKISD--ISPLASLPNLIEVHLKNNQISDV--SPLANTSNLFIVTLTNQ 227

Query: 467 MLNGFIPLSLGKLSHLEYLDLSNNKL 492
            +          L     +   +   
Sbjct: 228 TITNQPVFYNNNLVVPNVVKGPSGAP 253

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 81.8 bits (202), Expect = 5e-17
 Identities = 49/259 (18%), Positives = 89/259 (34%), Gaps = 20/259 (7%)

Query: 131 LDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNY 190
                +     +IP  L    N   L     K   +         +L+ +++S     N 
Sbjct: 14  FLCQESKVT--EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEIS----QND 65

Query: 191 DLHVDSLSWLSGLYMLEHLDLSQMN-LSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLL 249
            L V      S L  L  + + + N L   +       +LP+L+ L ++   + H P + 
Sbjct: 66  VLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAF--QNLPNLQYLLISNTGIKHLPDVH 123

Query: 250 SANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRH 309
             +      L +  N   +++ +  S+V      V + L+ N  Q +I     N T L  
Sbjct: 124 KIHSLQKVLLDIQDNINIHTI-ERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDE 181

Query: 310 LDL-RFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLG 368
           L+L   N             +    L ++   +  ++ S GLENL  +         KL 
Sbjct: 182 LNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLKKLP 240

Query: 369 GKIPTSFARLCKLTSVDLS 387
                +  +L  L    L+
Sbjct: 241 -----TLEKLVALMEASLT 254

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 72.6 bits (178), Expect = 4e-14
 Identities = 44/242 (18%), Positives = 72/242 (29%), Gaps = 15/242 (6%)

Query: 286 IDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTI 345
                ++   +IP  L    +   L            G  S F DLE + ++ N +   I
Sbjct: 14  FLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 70

Query: 346 SSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSC 405
            +    NL  +  + +   + L    P +F  L  L  + +S   +     + L      
Sbjct: 71  EADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGI-----KHLPDVHKI 125

Query: 406 GAYALESLDLS----ICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKL 461
            +     LD+     I  I  +    L        L L  N +      A       +  
Sbjct: 126 HSLQKVLLDIQDNINIHTIERNSFVGLSF--ESVILWLNKNGIQEIHNSAFNGTQLDELN 183

Query: 462 DLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKF 521
              NN L           S    LD+S  +++ SL      NL KL   S      +   
Sbjct: 184 LSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLKKLPTL 242

Query: 522 NP 523
             
Sbjct: 243 EK 244

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 61.8 bits (150), Expect = 1e-10
 Identities = 40/247 (16%), Positives = 77/247 (31%), Gaps = 28/247 (11%)

Query: 253 FSSLKALHLAINNF---DNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIG-LRNLTSLR 308
             +   L   +          F       G  +L  I++S N     I      NL  L 
Sbjct: 29  PRNAIELRFVLTKLRVIQKGAFS------GFGDLEKIEISQNDVLEVIEADVFSNLPKLH 82

Query: 309 HLDL-RFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKL 367
            + + + N      P       +L++L ++   ++  +  V   +      LD+  N  +
Sbjct: 83  EIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINI 141

Query: 368 GGKIPTSFARLCKLTSVDLSLIDLSQDFSQVL--DTFSSCGAYALESLDL-SICQISGHL 424
                 SF  L         ++ L+++  Q +    F+      L   D  ++ ++   +
Sbjct: 142 HTIERNSFVGLSFE----SVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDV 197

Query: 425 TNQLLQFKSLHTLELGHNSLFGPLPP-ALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLE 483
            +          L++    +   LP   L  L  L+     N  L     L   KL  L 
Sbjct: 198 FHGA---SGPVILDISRTRI-HSLPSYGLENLKKLRARSTYN--LKKLPTLE--KLVALM 249

Query: 484 YLDLSNN 490
              L+  
Sbjct: 250 EASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 53.7 bits (129), Expect = 7e-08
 Identities = 40/237 (16%), Positives = 77/237 (32%), Gaps = 33/237 (13%)

Query: 121 SLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQ-LGNLSNLQY 179
           +      L  +++S ND   +       +L  L  + +  A     I  +   NL NLQY
Sbjct: 49  AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY 108

Query: 180 LDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTK 239
           L +S T +     H+  +  +        LD+         +            +L L K
Sbjct: 109 LLISNTGIK----HLPDVHKI-HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK 163

Query: 240 CQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVF-GLRNLVFIDLSSNQFQGQIP 298
             +          F+  +   L +++ +N+L +  + VF G    V +D+S  +    +P
Sbjct: 164 NGIQEIHNSA---FNGTQLDELNLSD-NNNLEELPNDVFHGASGPVILDISRTRIH-SLP 218

Query: 299 IG---------------------LRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFL 334
                                  L  L +L    L +         W  + ++L  +
Sbjct: 219 SYGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTYPSHCCAFANWRRQISELHPI 275

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 77.2 bits (190), Expect = 9e-16
 Identities = 51/255 (20%), Positives = 82/255 (32%), Gaps = 18/255 (7%)

Query: 120 PSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLE--NLRYLNLSGAKFAGMIPLQLGNL--S 175
             ++    L  L +         +   L  L    L+ L L   +  G  P  L      
Sbjct: 62  TDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGP 121

Query: 176 NLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVL 235
           +L  L+L     +  D  +  L        L+ L ++Q +    S   +     P+L  L
Sbjct: 122 DLNILNLRNVSWATRDAWLAELQQWLKPG-LKVLSIAQAHSLNFSCEQV--RVFPALSTL 178

Query: 236 KLTKCQLCHFPPLLSA----NFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSN 291
            L+         L+SA     F +L+ L L     +       +       L  +DLS N
Sbjct: 179 DLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHN 238

Query: 292 QFQGQIP-IGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGL 350
             +           + L  L+L F        G  +K   L  L +++N L    S   L
Sbjct: 239 SLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAK---LSVLDLSYNRLDRNPSPDEL 295

Query: 351 ENLTSIETLDLSGNS 365
             +     L L GN 
Sbjct: 296 PQVG---NLSLKGNP 307

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 72.6 bits (178), Expect = 3e-14
 Identities = 42/232 (18%), Positives = 78/232 (33%), Gaps = 13/232 (5%)

Query: 296 QIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSL--QGTISSVGLENL 353
           ++  G R+L  L  L       +      + K   L+ L+V    +  +    ++ +  +
Sbjct: 37  ELYGGGRSLEYL--LKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGI 94

Query: 354 TSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLS-QDFSQVLDTFSSCGAYALES 412
           + ++ L L     + G  P             L+L ++S       L          L+ 
Sbjct: 95  SGLQELTLENLE-VTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKV 153

Query: 413 LDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLP----PALGELSSLKKLDLSNNML 468
           L ++          Q+  F +L TL+L  N   G           +  +L+ L L N  +
Sbjct: 154 LSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM 213

Query: 469 N---GFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSL 517
               G           L+ LDLS+N L  +         ++L   + S   L
Sbjct: 214 ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL 265

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 72.2 bits (177), Expect = 4e-14
 Identities = 67/300 (22%), Positives = 105/300 (35%), Gaps = 39/300 (13%)

Query: 226 TNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVF 285
             SL  L     T+  L  F  ++ +   SLK L +      + +      V G+  L  
Sbjct: 42  GRSLEYLLKRVDTEADLGQFTDIIKS--LSLKRLTVRAARIPSRILFGALRVLGISGLQE 99

Query: 286 IDLSSNQFQGQIP--IGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQG 343
           + L + +  G  P  +       L  L+LR N   +T   WL++        +   S+  
Sbjct: 100 LTLENLEVTGTAPPPLLEATGPDLNILNLR-NVSWATRDAWLAELQQWLKPGLKVLSIAQ 158

Query: 344 ----TISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVL 399
                 S   +    ++ TLDLS N +LG       + LC L    L ++ L        
Sbjct: 159 AHSLNFSCEQVRVFPALSTLDLSDNPELGE--RGLISALCPLKFPTLQVLALR------- 209

Query: 400 DTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGE-LSSL 458
                         +  +   SG  +        L  L+L HNSL         +  S L
Sbjct: 210 --------------NAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQL 255

Query: 459 KKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLI 518
             L+LS   L     +  G  + L  LDLS N+L+ + S      +  L   S  GN  +
Sbjct: 256 NSLNLSFTGLKQ---VPKGLPAKLSVLDLSYNRLDRNPSPDELPQVGNL---SLKGNPFL 309

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 66.1 bits (161), Expect = 5e-12
 Identities = 38/202 (18%), Positives = 66/202 (32%), Gaps = 11/202 (5%)

Query: 118 VNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNL 177
           +  +  DL  L   ++S    +             L+ L+++ A        Q+     L
Sbjct: 116 LEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPAL 175

Query: 178 QYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWL-LVTNSLPSLKVLK 236
             LDLS       +  + S         L+ L L    +   S     +  +   L+ L 
Sbjct: 176 STLDLSDNPELG-ERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLD 234

Query: 237 LTKCQLCHFPPLLS-ANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQG 295
           L+   L       S    S L +L+L+       + +          L  +DLS N+   
Sbjct: 235 LSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP-----AKLSVLDLSYNRLDR 288

Query: 296 QIPIGLRNLTSLRHLDLRFNYF 317
             P     L  + +L L+ N F
Sbjct: 289 -NPSPDE-LPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 43.7 bits (103), Expect = 8e-05
 Identities = 23/106 (21%), Positives = 28/106 (26%), Gaps = 10/106 (9%)

Query: 107 SNYERSKLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGM 166
            N       G  +        L  LDLS N                L  LNLS      +
Sbjct: 209 RNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV 268

Query: 167 IPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLS 212
                G  + L  LDLS   L               L  + +L L 
Sbjct: 269 PK---GLPAKLSVLDLSYNRLD-------RNPSPDELPQVGNLSLK 304

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 72.3 bits (178), Expect = 7e-15
 Identities = 29/176 (16%), Positives = 62/176 (35%), Gaps = 18/176 (10%)

Query: 342 QGTISSVGLENLTSIETLDLSGN--SKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVL 399
           Q + +++    + S+  + L+    + L     T       +  + ++ I  +       
Sbjct: 32  QSSTANITEAQMNSLTYITLANINVTDL-----TGIEYAHNIKDLTINNIHATN-----Y 81

Query: 400 DTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLK 459
           +  S      LE L +    ++      L    SL  L++ H++    +   +  L  + 
Sbjct: 82  NPISGLSN--LERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVN 139

Query: 460 KLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGN 515
            +DLS N     I   L  L  L+ L++  + ++     I   +  KL    A   
Sbjct: 140 SIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH-DYRGIE--DFPKLNQLYAFSQ 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 65.0 bits (159), Expect = 2e-12
 Identities = 26/175 (14%), Positives = 60/175 (34%), Gaps = 16/175 (9%)

Query: 215 NLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYG 274
            L ++S   +    + SL  + L    +     +      ++K L +   +  N      
Sbjct: 29  LLGQSSTANITEAQMNSLTYITLANINVTDLTGI--EYAHNIKDLTINNIHATNY----- 81

Query: 275 SWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFL 334
           + + GL NL  + +            L  LTSL  LD+  +  + +    ++    +  +
Sbjct: 82  NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSI 141

Query: 335 SVAWNSLQGTISSVGLENLTSIETLDLSGN--SKLGGKIPTSFARLCKLTSVDLS 387
            +++N     I    L+ L  +++L++  +                 KL  +   
Sbjct: 142 DLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDY-----RGIEDFPKLNQLYAF 189

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 64.2 bits (157), Expect = 5e-12
 Identities = 26/144 (18%), Positives = 50/144 (34%), Gaps = 13/144 (9%)

Query: 122 LVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLD 181
           +    ++  L ++            +  L NL  L + G          L  L++L  LD
Sbjct: 62  IEYAHNIKDLTINNIHATNY---NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118

Query: 182 LSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQ 241
           +S +   +       L+ ++ L  +  +DLS          L    +LP LK L +    
Sbjct: 119 ISHSAHDDSI-----LTKINTLPKVNSIDLSYNGAITDIMPL---KTLPELKSLNIQFDG 170

Query: 242 LCHFPPLLSANFSSLKALHLAINN 265
           +  +  +   +F  L  L+     
Sbjct: 171 VHDYRGI--EDFPKLNQLYAFSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 60.4 bits (147), Expect = 1e-10
 Identities = 28/199 (14%), Positives = 63/199 (31%), Gaps = 42/199 (21%)

Query: 121 SLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYL 180
           +   +  L ++ L+  +   +     +    N++ L ++        P  +  LSNL+ L
Sbjct: 39  TEAQMNSLTYITLANINVTDL---TGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERL 93

Query: 181 DLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKC 240
            + G  +++     D +  LSGL  L  LD+S              ++     + K+   
Sbjct: 94  RIMGKDVTS-----DKIPNLSGLTSLTLLDISH-------------SAHDDSILTKI--- 132

Query: 241 QLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIG 300
                          + ++ L+ N     +      +  L  L  +++  +       I 
Sbjct: 133 ----------NTLPKVNSIDLSYNGAITDI----MPLKTLPELKSLNIQFDGVHDYRGIE 178

Query: 301 LRNLTSLRHLDLRFNYFNS 319
             +   L  L         
Sbjct: 179 --DFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 60.0 bits (146), Expect = 1e-10
 Identities = 27/215 (12%), Positives = 72/215 (33%), Gaps = 44/215 (20%)

Query: 151 ENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLD 210
              +         +    +    +++L Y+ L+   +++          L+G+       
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTD----------LTGI------- 62

Query: 211 LSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSL 270
                               ++K L +      ++ P+  +  S+L+ L +   +  +  
Sbjct: 63  ----------------EYAHNIKDLTINNIHATNYNPI--SGLSNLERLRIMGKDVTSDK 104

Query: 271 FQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFND 330
                 + GL +L  +D+S +     I   +  L  +  +DL +N   +     L    +
Sbjct: 105 I---PNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPE 160

Query: 331 LEFLSVAWNSLQGTISSV-GLENLTSIETLDLSGN 364
           L+ L++ ++     +    G+E+   +  L     
Sbjct: 161 LKSLNIQFDG----VHDYRGIEDFPKLNQLYAFSQ 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 9/93 (9%)

Query: 120 PSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQY 179
           P+L  L  L  LD+S +  +   + K + +L  +  ++LS       I   L  L  L+ 
Sbjct: 106 PNLSGLTSLTLLDISHSAHDDSILTK-INTLPKVNSIDLSYNGAITDIM-PLKTLPELKS 163

Query: 180 LDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLS 212
           L++           V     +     L  L   
Sbjct: 164 LNIQFD-------GVHDYRGIEDFPKLNQLYAF 189

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 13/77 (16%), Positives = 24/77 (31%), Gaps = 4/77 (5%)

Query: 113 KLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLG 172
                +   +  L  +  +DLS N    I     L +L  L+ LN+          ++  
Sbjct: 123 AHDDSILTKINTLPKVNSIDLSYNG--AITDIMPLKTLPELKSLNIQFDGVHDYRGIE-- 178

Query: 173 NLSNLQYLDLSGTFLSN 189
           +   L  L      +  
Sbjct: 179 DFPKLNQLYAFSQTIGG 195

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 76.2 bits (187), Expect = 9e-15
 Identities = 42/250 (16%), Positives = 76/250 (30%), Gaps = 38/250 (15%)

Query: 125 LKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSG 184
           +     L L+  +     +P  L     +  L ++       +P       +L+YLD   
Sbjct: 58  INQFSELQLNRLNLS--SLPDNLPP--QITVLEITQNAL-ISLPELPA---SLEYLDACD 109

Query: 185 TFLSNYDLHVDSLSWL-----------SGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLK 233
             LS       SL  L               +LE+++     L+       +     SL+
Sbjct: 110 NRLSTLPELPASLKHLDVDNNQLTMLPELPALLEYINADNNQLTM------LPELPTSLE 163

Query: 234 VLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNL----VFIDLS 289
           VL +   QL   P L      SL+AL ++     N L    +      +     +F    
Sbjct: 164 VLSVRNNQLTFLPELP----ESLEALDVS----TNLLESLPAVPVRNHHSEETEIFFRCR 215

Query: 290 SNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVG 349
            N+    IP  + +L     + L  N  +S     LS+                +     
Sbjct: 216 ENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQN 274

Query: 350 LENLTSIETL 359
             +    + +
Sbjct: 275 TLHRPLADAV 284

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 69.2 bits (169), Expect = 1e-12
 Identities = 62/381 (16%), Positives = 112/381 (29%), Gaps = 66/381 (17%)

Query: 167 IPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVT 226
           I L + N  +L   +     +S    + D  S             ++         LL  
Sbjct: 3   IMLPINNNFSLS-QNSFYNTISG--TYADYFSAWDKWEKQALPGENRNEAVS----LLKE 55

Query: 227 NSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFI 286
             +     L+L +  L   P  L      +  L +  N   +             +L ++
Sbjct: 56  CLINQFSELQLNRLNLSSLPDNL---PPQITVLEITQNALISLPEL-------PASLEYL 105

Query: 287 DLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTIS 346
           D   N+    +P       SL+HLD+  N   +  P   +    LE+++   N L     
Sbjct: 106 DACDNRLS-TLP---ELPASLKHLDVDNNQL-TMLPELPAL---LEYINADNNQLTML-- 155

Query: 347 SVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCG 406
               E  TS+E L +  N +L   +P     L  L        D+S +            
Sbjct: 156 ---PELPTSLEVLSVRNN-QLT-FLPELPESLEAL--------DVSTNL----------- 191

Query: 407 AYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNN 466
              LESL     +             +        N +   +P  +  L     + L +N
Sbjct: 192 ---LESLPAVPVRNHHSEE-------TEIFFRCRENRI-THIPENILSLDPTCTIILEDN 240

Query: 467 MLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLT----KLTWFSASGNSLILKFN 522
            L+  I  SL + +            + S  + + ++         WF  +  S + +  
Sbjct: 241 PLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIW 300

Query: 523 PNWVPPFQLETLQLRSCHLGP 543
             +       T       L  
Sbjct: 301 HAFEHEEHANTFSAFLDRLSD 321

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 73.9 bits (182), Expect = 9e-15
 Identities = 49/238 (20%), Positives = 91/238 (38%), Gaps = 24/238 (10%)

Query: 299 IGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIET 358
                       +L+            ++ N ++ +    + ++ ++   G++ L ++  
Sbjct: 18  FSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQ--GIQYLPNVTK 72

Query: 359 LDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSIC 418
           L L+GN     K+ T    L  L +    L  L  D ++V D  S      L+SL L   
Sbjct: 73  LFLNGN-----KL-TDIKPLANLKN----LGWLFLDENKVKDLSSLKDLKKLKSLSLEHN 122

Query: 419 QISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGK 478
            IS  +   L+    L +L LG+N +       L  L+ L  L L +N ++  +PL+   
Sbjct: 123 GIS-DING-LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVPLA--G 176

Query: 479 LSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQL 536
           L+ L+ L LS N ++  L  +    L  L          + K   +        T++ 
Sbjct: 177 LTKLQNLYLSKNHIS-DLRALA--GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKN 231

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 72.0 bits (177), Expect = 4e-14
 Identities = 46/246 (18%), Positives = 82/246 (33%), Gaps = 28/246 (11%)

Query: 122 LVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLD 181
                  I  +L                L ++  +  + +    +  +Q   L N+  L 
Sbjct: 20  DDAFAETIKDNLKKKSVTDA---VTQNELNSIDQIIANNSDIKSVQGIQ--YLPNVTKLF 74

Query: 182 LSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQ 241
           L+G  L++       +  L+ L  L  L L +  +   S        L  LK L L    
Sbjct: 75  LNGNKLTD-------IKPLANLKNLGWLFLDENKVKDLSS----LKDLKKLKSLSLEHNG 123

Query: 242 LCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGL 301
           +     L   +   L++L+L  N   +      + +  L  L  + L  NQ    I   L
Sbjct: 124 ISDINGL--VHLPQLESLYLGNNKITDI-----TVLSRLTKLDTLSLEDNQIS-DIV-PL 174

Query: 302 RNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDL 361
             LT L++L L  N+ +      L+   +L+ L +               NL    T+  
Sbjct: 175 AGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECL-NKPINHQSNLVVPNTVKN 231

Query: 362 SGNSKL 367
           +  S +
Sbjct: 232 TDGSLV 237

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 69.3 bits (170), Expect = 3e-13
 Identities = 49/277 (17%), Positives = 97/277 (35%), Gaps = 33/277 (11%)

Query: 251 ANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHL 310
             F+     +L   +  +++ Q       L ++  I  +++  +  +  G++ L ++  L
Sbjct: 21  DAFAETIKDNLKKKSVTDAVTQNE-----LNSIDQIIANNSDIK-SVQ-GIQYLPNVTKL 73

Query: 311 DLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGN--SKLG 368
            L  N      P  L+   +L +L +  N ++       L++L  +++L L  N  S + 
Sbjct: 74  FLNGNKLTDIKP--LANLKNLGWLFLDENKVK---DLSSLKDLKKLKSLSLEHNGISDI- 127

Query: 369 GKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQL 428
                    L +L S+ L    ++      +   S      L++L L   QIS  +   L
Sbjct: 128 ----NGLVHLPQLESLYLGNNKITD-----ITVLSRL--TKLDTLSLEDNQIS-DIVP-L 174

Query: 429 LQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLS 488
                L  L L  N +      AL  L +L  L+L +             L     +  +
Sbjct: 175 AGLTKLQNLYLSKNHI--SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNT 232

Query: 489 NNKLNA--SLSEIHFVNLTKLTW-FSASGNSLILKFN 522
           +  L     +S+        + W      N +   F 
Sbjct: 233 DGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFY 269

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 68.5 bits (168), Expect = 6e-13
 Identities = 51/244 (20%), Positives = 93/244 (38%), Gaps = 41/244 (16%)

Query: 120 PSLVDLKHLIHLDLSGN---DFEGIQIPKYL----------------GSLENLRYLNLSG 160
            +  +L  +  +  + +     +GIQ    +                 +L+NL +L L  
Sbjct: 40  VTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDE 99

Query: 161 AKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKAS 220
            K   +  L+  +L  L+ L L    +S+       ++ L  L  LE L L    ++  +
Sbjct: 100 NKVKDLSSLK--DLKKLKSLSLEHNGISD-------INGLVHLPQLESLYLGNNKITDIT 150

Query: 221 DWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGL 280
               V + L  L  L L   Q+    PL  A  + L+ L+L+ N+  +        + GL
Sbjct: 151 ----VLSRLTKLDTLSLEDNQISDIVPL--AGLTKLQNLYLSKNHISDL-----RALAGL 199

Query: 281 RNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNS 340
           +NL  ++L S +   +      NL     +       +  TP  +S   D E  +V W+ 
Sbjct: 200 KNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG--SLVTPEIISDDGDYEKPNVKWHL 257

Query: 341 LQGT 344
            + T
Sbjct: 258 PEFT 261

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 74.0 bits (181), Expect = 4e-14
 Identities = 47/252 (18%), Positives = 83/252 (32%), Gaps = 18/252 (7%)

Query: 267 DNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLS 326
           D         ++   +     +                  L   +L     ++     L 
Sbjct: 311 DQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVE-KSTVLQSELE 369

Query: 327 KFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDL 386
              +L+ L                  LT I  +          +    F+ L  +  +  
Sbjct: 370 SCKELQELEP----------ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRA 419

Query: 387 SLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFG 446
           + +D  +    + ++        +  L L+   ++  L + L Q   +  L+L HN L  
Sbjct: 420 AYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLRA 477

Query: 447 PLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEI-HFVNLT 505
            LPPAL  L  L+ L  S+N L       +  L  L+ L L NN+L    + I   V+  
Sbjct: 478 -LPPALAALRCLEVLQASDNALENV--DGVANLPRLQELLLCNNRLQ-QSAAIQPLVSCP 533

Query: 506 KLTWFSASGNSL 517
           +L   +  GNSL
Sbjct: 534 RLVLLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 58.6 bits (141), Expect = 3e-09
 Identities = 33/159 (20%), Positives = 63/159 (39%), Gaps = 15/159 (9%)

Query: 104 KAGSNYERSKLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKF 163
            A  +  RSK   + +   ++   +  L L+  D   +    +L  L  + +L+LS  + 
Sbjct: 419 AAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL---CHLEQLLLVTHLDLSHNRL 475

Query: 164 AGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWL 223
              +P  L  L  L+ L  S   L        ++  ++ L  L+ L L    L +++  +
Sbjct: 476 RA-LPPALAALRCLEVLQASDNALE-------NVDGVANLPRLQELLLCNNRLQQSAA-I 526

Query: 224 LVTNSLPSLKVLKLTKCQLCHFPPL---LSANFSSLKAL 259
               S P L +L L    LC    +   L+    S+ ++
Sbjct: 527 QPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 41.7 bits (97), Expect = 5e-04
 Identities = 30/162 (18%), Positives = 52/162 (32%), Gaps = 17/162 (10%)

Query: 108 NYERSKLGGKVNPSLVDLKHLIHLDLSGNDFE----GIQIPKYLGSLENLRYLNLSGAKF 163
             +      +       LK +  +  +  D       ++         ++R L+L+    
Sbjct: 394 ALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL 453

Query: 164 AGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWL 223
             +  L+   L  + +LDLS   L            L+ L  LE L  S   L       
Sbjct: 454 TVLCHLE--QLLLVTHLDLSHNRLR------ALPPALAALRCLEVLQASDNALENVDG-- 503

Query: 224 LVTNSLPSLKVLKLTKCQLCHFPPLLS-ANFSSLKALHLAIN 264
               +LP L+ L L   +L     +    +   L  L+L  N
Sbjct: 504 --VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 68.8 bits (169), Expect = 5e-13
 Identities = 56/232 (24%), Positives = 91/232 (39%), Gaps = 32/232 (13%)

Query: 297 IPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSI 356
           IP  L    S ++LDL FN            F +L+ L ++   +Q TI     ++L+ +
Sbjct: 22  IPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHL 78

Query: 357 ETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLS 416
            TL L+GN  +      +F+ L  L  +     +L+      L+ F       L+ L+++
Sbjct: 79  STLILTGN-PIQSLALGAFSGLSSLQKLVAVETNLAS-----LENFPIGHLKTLKELNVA 132

Query: 417 ICQISGHLTNQLLQFKS---------LHTLELGHNSLFGPLPPALGELSSLK----KLDL 463
                    N +  FK          L  L+L  N +       L  L  +      LDL
Sbjct: 133 --------HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184

Query: 464 SNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGN 515
           S N +N   P +  ++  L+ L L  N+L  S+ +  F  LT L       N
Sbjct: 185 SLNPMNFIQPGAFKEI-RLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 67.7 bits (166), Expect = 9e-13
 Identities = 54/219 (24%), Positives = 85/219 (38%), Gaps = 19/219 (8%)

Query: 152 NLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDL 211
           + + L+LS      +      +   LQ LDLS   +   +           L  L  L L
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA-----YQSLSHLSTLIL 83

Query: 212 SQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLF 271
           +   +   +      + L SL+ L   +  L         +  +LK L++A N    S  
Sbjct: 84  TGNPIQSLAL--GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI-QSFK 140

Query: 272 QYGSWVF-GLRNLVFIDLSSNQFQGQIPIG-LRNLTSLR----HLDLRFNYFNSTTPGWL 325
                 F  L NL  +DLSSN+ Q  I    LR L  +      LDL  N  N   PG  
Sbjct: 141 LPE--YFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 197

Query: 326 SKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGN 364
            +   L+ L++  N L+ ++     + LTS++ + L  N
Sbjct: 198 KEIR-LKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 67.3 bits (165), Expect = 1e-12
 Identities = 56/247 (22%), Positives = 94/247 (38%), Gaps = 48/247 (19%)

Query: 253 FSSLKALHLAINNFDNSLFQYGSWVF-GLRNLVFIDLSSNQFQGQIPIGL-RNLTSLRHL 310
             S K L L      N L   GS+ F     L  +DLS  + Q  I  G  ++L+ L  L
Sbjct: 27  PFSTKNLDL----SFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTL 81

Query: 311 DLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGK 370
            L  N   S   G  S  + L+ L     +L  ++ +  + +L +++ L+++ N      
Sbjct: 82  ILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHN------ 134

Query: 371 IPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQIS-------GH 423
                     + S             ++ + FS+     LE LDLS  +I          
Sbjct: 135 ---------LIQSF------------KLPEYFSNLTN--LEHLDLSSNKIQSIYCTDLRV 171

Query: 424 LTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLE 483
           L    +   +L +L+L  N +   + P   +   LK+L L  N L         +L+ L+
Sbjct: 172 LHQ--MPLLNL-SLDLSLNPM-NFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQ 227

Query: 484 YLDLSNN 490
            + L  N
Sbjct: 228 KIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 65.4 bits (160), Expect = 6e-12
 Identities = 56/239 (23%), Positives = 88/239 (36%), Gaps = 34/239 (14%)

Query: 230 PSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVF-GLRNLVFIDL 288
            S K L L+   L H       +F  L+ L L+       +       +  L +L  + L
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLS----RCEIQTIEDGAYQSLSHLSTLIL 83

Query: 289 SSNQFQGQIPIGL-RNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISS 347
           + N  Q  + +G    L+SL+ L        S     +     L+ L+VA N +Q     
Sbjct: 84  TGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 142

Query: 348 VGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGA 407
               NLT++E LDLS N K+     T    L ++  ++L                     
Sbjct: 143 EYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNL--------------------- 180

Query: 408 YALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNN 466
               SLDLS+  ++  +     +   L  L L  N L          L+SL+K+ L  N
Sbjct: 181 ----SLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 58.4 bits (142), Expect = 1e-09
 Identities = 42/192 (21%), Positives = 77/192 (40%), Gaps = 9/192 (4%)

Query: 125 LKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSG 184
              L  LDLS  + + I+      SL +L  L L+G     +       LS+LQ L    
Sbjct: 51  FPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109

Query: 185 TFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCH 244
           T L++ +        +  L  L+ L+++   +          ++L +L+ L L+  ++  
Sbjct: 110 TNLASLENFP-----IGHLKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSNKIQS 163

Query: 245 FPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIG-LRN 303
                      +  L+L+++   N +       F    L  + L +NQ +  +P G    
Sbjct: 164 IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLK-SVPDGIFDR 222

Query: 304 LTSLRHLDLRFN 315
           LTSL+ + L  N
Sbjct: 223 LTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 33/110 (30%), Positives = 47/110 (42%), Gaps = 2/110 (1%)

Query: 409 ALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPP-ALGELSSLKKLDLSNNM 467
            L+ LDLS C+I             L TL L  N +   L   A   LSSL+KL      
Sbjct: 53  ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI-QSLALGAFSGLSSLQKLVAVETN 111

Query: 468 LNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSL 517
           L       +G L  L+ L++++N + +     +F NLT L     S N +
Sbjct: 112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 43.8 bits (104), Expect = 6e-05
 Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 5/88 (5%)

Query: 456 SSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGN 515
            S K LDLS N L      S      L+ LDLS  ++  ++ +  + +L+ L+    +GN
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGN 86

Query: 516 SLILKFNPNWVP--PFQLETLQLRSCHL 541
            +  +            L+ L     +L
Sbjct: 87  PI--QSLALGAFSGLSSLQKLVAVETNL 112

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 67.4 bits (165), Expect = 1e-12
 Identities = 45/229 (19%), Positives = 87/229 (37%), Gaps = 47/229 (20%)

Query: 279 GLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAW 338
           GL N V  +L        +    + L+ +++ +   +   S     +  F +L+ L ++ 
Sbjct: 17  GLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSH 72

Query: 339 NSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQV 398
           N +   +S   L++LT +E L ++ N               +L   +L+ I  +      
Sbjct: 73  NQIS-DLS--PLKDLTKLEELSVNRN---------------RLK--NLNGIPSAC----- 107

Query: 399 LDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSL 458
                      L  L L   ++     + L+  K+L  L + +N L       LG LS L
Sbjct: 108 -----------LSRLFLDNNELR-DTDS-LIHLKNLEILSIRNNKLKSI--VMLGFLSKL 152

Query: 459 KKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKL 507
           + LDL  N +     L+  +L  + ++DL+  K   +    +   L   
Sbjct: 153 EVLDLHGNEITNTGGLT--RLKKVNWIDLTGQKCV-NEPVKYQPELYIT 198

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 63.1 bits (154), Expect = 3e-11
 Identities = 42/243 (17%), Positives = 76/243 (31%), Gaps = 29/243 (11%)

Query: 122 LVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLD 181
              L + +  +L       +        L  ++  N   +    +  +Q    +NL+ L 
Sbjct: 15  DPGLANAVKQNLGKQSVTDL---VSQKELSGVQNFNGDNSNIQSLAGMQ--FFTNLKELH 69

Query: 182 LSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQ 241
           LS   +S+       LS L  L  LE L +++  L       L       L  L L   +
Sbjct: 70  LSHNQISD-------LSPLKDLTKLEELSVNRNRLKN-----LNGIPSACLSRLFLDNNE 117

Query: 242 LCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGL 301
           L     L   +  +L+ L +  N   +        +  L  L  +DL  N+        L
Sbjct: 118 LRDTDSL--IHLKNLEILSIRNNKLKSI-----VMLGFLSKLEVLDLHGNEITNTGG--L 168

Query: 302 RNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDL 361
             L  +  +DL      +     +    +L   +   +     IS   + N  S     +
Sbjct: 169 TRLKKVNWIDLTGQKCVNEP---VKYQPELYITNTVKDPDGRWISPYYISNGGSYVDGCV 225

Query: 362 SGN 364
              
Sbjct: 226 LWE 228

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 62.0 bits (151), Expect = 6e-11
 Identities = 39/225 (17%), Positives = 81/225 (36%), Gaps = 26/225 (11%)

Query: 120 PSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQY 179
            S  +L  + + +   ++ + +     +    NL+ L+LS  + + + PL+  +L+ L+ 
Sbjct: 35  VSQKELSGVQNFNGDNSNIQSL---AGMQFFTNLKELHLSHNQISDLSPLK--DLTKLEE 89

Query: 180 LDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTK 239
           L ++   L N    ++ +        L  L L    L            L +L++L +  
Sbjct: 90  LSVNRNRLKN----LNGIPSAC----LSRLFLDNNELRDTDSL----IHLKNLEILSIRN 137

Query: 240 CQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPI 299
            +L     L     S L+ L L  N   N+       +  L+ + +IDL+  +   +   
Sbjct: 138 NKLKSIVML--GFLSKLEVLDLHGNEITNT-----GGLTRLKKVNWIDLTGQKCVNEPVK 190

Query: 300 GLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGT 344
               L       ++       +P ++S         V W     T
Sbjct: 191 YQPELYIT--NTVKDPDGRWISPYYISNGGSYVDGCVLWELPVYT 233

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 29/127 (22%), Positives = 49/127 (38%), Gaps = 26/127 (20%)

Query: 410 LESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLN 469
           +++ +     I   L   +  F +L  L L HN +       L +L+ L++L ++ N L 
Sbjct: 43  VQNFNGDNSNIQ-SLAG-MQFFTNLKELHLSHNQI--SDLSPLKDLTKLEELSVNRNRLK 98

Query: 470 GFIPLS-------------------LGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWF 510
               +                    L  L +LE L + NNKL  S+  +    L+KL   
Sbjct: 99  NLNGIPSACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLK-SIVMLG--FLSKLEVL 155

Query: 511 SASGNSL 517
              GN +
Sbjct: 156 DLHGNEI 162

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 68.2 bits (167), Expect = 2e-12
 Identities = 52/318 (16%), Positives = 95/318 (29%), Gaps = 55/318 (17%)

Query: 251 ANFSSLKALHLAINNFDNSLFQY-GSWVFGLRNLVFIDLSSNQFQGQ----IPIGLRNLT 305
           A FS ++   L ++       +   + +    ++  I LS N    +    +   + +  
Sbjct: 2   ARFS-IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKK 60

Query: 306 SLRHLDLRFNYFNSTTPGW----------LSKFNDLEFLSVAWNSL--QGTIS-SVGLEN 352
            L   +    +                  L K   L  + ++ N+            L  
Sbjct: 61  DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSK 120

Query: 353 LTSIETLDLSGN--SKLGGKI----------PTSFARLCKLTSVDLSLIDLSQDFSQVL- 399
            T +E L L  N      G                     L S+      L     +   
Sbjct: 121 HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 180

Query: 400 DTFSSCGAYALESLDLSICQI-----SGHLTNQLLQFKSLHTLELGHNSLFGP-----LP 449
            TF S     L ++ +    I        L   L   + L  L+L  N+ F       L 
Sbjct: 181 KTFQSHRL--LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALA 237

Query: 450 PALGELSSLKKLDLSNNML--NGFIP----LSLGKLSHLEYLDLSNNKLNA----SLSEI 499
            AL    +L++L L++ +L   G        S  +   L+ L L  N++      +L  +
Sbjct: 238 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTV 297

Query: 500 HFVNLTKLTWFSASGNSL 517
               +  L +   +GN  
Sbjct: 298 IDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 58.6 bits (142), Expect = 2e-09
 Identities = 56/344 (16%), Positives = 108/344 (31%), Gaps = 65/344 (18%)

Query: 128 LIHLDLSGNDF--EGIQ-IPKYLGSLENLRYLNLSGAKF--AGMIPL--QLGNLSNLQYL 180
           +    L  +    E  + +   L   ++++ + LSG          L   + +  +L+  
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 181 DLSGTFLSNYDLHVDS-----LSWLSGLYMLEHLDLSQMNLSKASDWLLVT--NSLPSLK 233
           + S  F       +       L  L     L  + LS       +   L+   +    L+
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 125

Query: 234 VLKLTKCQL--------------CHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFG 279
            L L    L                           L+++    N  +N   +  +  F 
Sbjct: 126 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNA-PPLRSIICGRNRLENGSMKEWAKTFQ 184

Query: 280 L-RNLVFIDLSSNQF-----QGQIPIGLRNLTSLRHLDLRFNYFNSTTPGW------LSK 327
             R L  + +  N       +  +  GL     L+ LDL+ N F  T  G       L  
Sbjct: 185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF--THLGSSALAIALKS 242

Query: 328 FNDLEFLSVAWNSLQGTISSVGLENL---------TSIETLDLSGNSKLGGKIPTSFAR- 377
           + +L  L +        +S+ G   +           ++TL L  N ++      +    
Sbjct: 243 WPNLRELGLNDCL----LSARGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTV 297

Query: 378 ----LCKLTSVDLSLIDLSQDFSQVL---DTFSSCGAYALESLD 414
               +  L  ++L+    S++   V    + FS+ G   L+ LD
Sbjct: 298 IDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELD 341

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 50.5 bits (121), Expect = 8e-07
 Identities = 40/232 (17%), Positives = 69/232 (29%), Gaps = 65/232 (28%)

Query: 349 GLENLTSIETLDLSGNSKLGGK----IPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSS 404
            L    S++ + LSGN+ +G +    +  + A    L   + S I   +   ++ +    
Sbjct: 27  VLLEDDSVKEIVLSGNT-IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALR- 84

Query: 405 CGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGP-----LPPALGELSSLK 459
                              L   LL+   LHT+ L  N+ FGP     L   L + + L+
Sbjct: 85  ------------------LLLQALLKCPKLHTVRLSDNA-FGPTAQEPLIDFLSKHTPLE 125

Query: 460 KLDLSNNML-------------NGFIPLSLGKLSHLEYLDLSNNKLNA----SLSEIHFV 502
            L L NN L                +         L  +    N+L        ++  F 
Sbjct: 126 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT-FQ 184

Query: 503 NLTKLTWFSASGNSL-----------ILKFNPNWVPPFQLETLQLRSCHLGP 543
           +   L       N +            L +         L+ L L+      
Sbjct: 185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQE------LKVLDLQDNTFTH 230

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 47.4 bits (113), Expect = 7e-06
 Identities = 45/283 (15%), Positives = 79/283 (27%), Gaps = 65/283 (22%)

Query: 122 LVDLKHLIHLDLSGND--------FEGIQ-IPKYLGSLENLRYLNLSGAKF--AGMIPL- 169
           +   K L   + S            E ++ + + L     L  + LS   F      PL 
Sbjct: 56  IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLI 115

Query: 170 -QLGNLSNLQYLDLS--------GTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSK-- 218
             L   + L++L L         G  ++     +           L  +   +  L    
Sbjct: 116 DFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS 175

Query: 219 ASDWLLVTNSLPSLKVLKLTKCQLCH------FPPLLSANFSSLKALHLAINNFDNSLFQ 272
             +W     S   L  +K+ +  +            L+     LK L L  N F +    
Sbjct: 176 MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC-QELKVLDLQDNTFTHL--- 231

Query: 273 YGSWVFG-----LRNLVFIDLSSNQFQGQ----IPIGLRNL--TSLRHLDLRFNYFNSTT 321
            GS           NL  + L+      +    +      L    L+ L L++N      
Sbjct: 232 -GSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDA 290

Query: 322 PGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGN 364
              L               +         E +  +  L+L+GN
Sbjct: 291 VRTLKT------------VID--------EKMPDLLFLELNGN 313

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 26/156 (16%), Positives = 48/156 (30%), Gaps = 41/156 (26%)

Query: 408 YALESLDLSICQISG----HLTNQLLQFKSLHTLELGHNSLFGP-----LPPALGELSSL 458
           +++E   L +  I+      +   LL+  S+  + L  N++ G      L   +     L
Sbjct: 4   FSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTI-GTEAARWLSENIASKKDL 62

Query: 459 KKLDLSNNMLNGFIPL----------SLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLT 508
           +  + S+                   +L K   L  + LS+N    +             
Sbjct: 63  EIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT------------- 109

Query: 509 WFSASGNSLILKFNPNWVPPFQLETLQLRSCHLGPH 544
             +       L  +        LE L L +  LGP 
Sbjct: 110 --AQEPLIDFLSKHTP------LEHLYLHNNGLGPQ 137

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 66.3 bits (162), Expect = 4e-12
 Identities = 46/165 (27%), Positives = 59/165 (35%), Gaps = 12/165 (7%)

Query: 354 TSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESL 413
                L LS N  L      +     +LT ++L   +L       L          L +L
Sbjct: 31  KDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAEL-----TKLQVDG--TLPVLGTL 82

Query: 414 DLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPP-ALGELSSLKKLDLSNNMLNGFI 472
           DLS  Q+   L        +L  L++  N L   LP  AL  L  L++L L  N L    
Sbjct: 83  DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL-TSLPLGALRGLGELQELYLKGNELKTLP 140

Query: 473 PLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSL 517
           P  L     LE L L+NN L   L       L  L       NSL
Sbjct: 141 PGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 61.3 bits (149), Expect = 2e-10
 Identities = 52/192 (27%), Positives = 71/192 (36%), Gaps = 19/192 (9%)

Query: 175 SNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKV 234
            +   L LS   L  + L       L     L  L+L +  L+K    L V  +LP L  
Sbjct: 31  KDTTILHLSENLLYTFSLAT-----LMPYTRLTQLNLDRAELTK----LQVDGTLPVLGT 81

Query: 235 LKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVF-GLRNLVFIDLSSNQF 293
           L L+  QL   P L      +L  L ++ N    SL         GL  L  + L  N+ 
Sbjct: 82  LDLSHNQLQSLPLLG-QTLPALTVLDVSFNRL-TSL---PLGALRGLGELQELYLKGNEL 136

Query: 294 QGQIPIGL-RNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLEN 352
           +  +P GL      L  L L  N       G L+   +L+ L +  NSL  TI   G   
Sbjct: 137 K-TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPK-GFFG 193

Query: 353 LTSIETLDLSGN 364
              +    L GN
Sbjct: 194 SHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 60.9 bits (148), Expect = 2e-10
 Identities = 39/159 (24%), Positives = 61/159 (38%), Gaps = 10/159 (6%)

Query: 230 PSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDN-SLFQYGSWVFGLRNLVFIDL 288
               +L L++  L  F       ++ L  L+L         +         L  L  +DL
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG------TLPVLGTLDL 84

Query: 289 SSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSV 348
           S NQ Q  +P+  + L +L  LD+ FN   S   G L    +L+ L +  N L+ T+   
Sbjct: 85  SHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPG 142

Query: 349 GLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLS 387
            L     +E L L+ N  L          L  L ++ L 
Sbjct: 143 LLTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQ 180

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 58.2 bits (141), Expect = 2e-09
 Identities = 35/145 (24%), Positives = 51/145 (35%), Gaps = 14/145 (9%)

Query: 374 SFARLCKLTSVDLSLIDLSQDFSQV-LDTFSSCGAYALESLDLSICQISGHLTNQLLQFK 432
             +++     V+       ++ + +  D            L LS   +       L+ + 
Sbjct: 5   EVSKVASHLEVNCD----KRNLTALPPDLPKD-----TTILHLSENLLYTFSLATLMPYT 55

Query: 433 SLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKL 492
            L  L L    L        G L  L  LDLS+N L   +PL    L  L  LD+S N+L
Sbjct: 56  RLTQLNLDRAEL--TKLQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRL 112

Query: 493 NASLSEIHFVNLTKLTWFSASGNSL 517
             SL       L +L      GN L
Sbjct: 113 -TSLPLGALRGLGELQELYLKGNEL 136

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 48/194 (24%), Positives = 62/194 (31%), Gaps = 45/194 (23%)

Query: 125 LKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSG 184
              L  L+L   +   +Q+    G+L  L  L+LS  +    +PL    L  L  LD+S 
Sbjct: 54  YTRLTQLNLDRAELTKLQV---DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSF 109

Query: 185 TFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCH 244
             L+       SL    G                          L  L+ L L   +L  
Sbjct: 110 NRLT-------SLP--LG----------------------ALRGLGELQELYLKGNELKT 138

Query: 245 FPPLLSANFSSLKALHLAINNFD---NSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGL 301
            PP L      L+ L LA NN       L        GL NL  + L  N     IP G 
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLN------GLENLDTLLLQENSLYT-IPKGF 191

Query: 302 RNLTSLRHLDLRFN 315
                L    L  N
Sbjct: 192 FGSHLLPFAFLHGN 205

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 62.2 bits (151), Expect = 1e-10
 Identities = 31/110 (28%), Positives = 46/110 (41%), Gaps = 4/110 (3%)

Query: 410 LESLDLSICQISGHLTNQLLQ-FKSLHTLELGHNSLFGPLPP-ALGELSSLKKLDLSNNM 467
              LDLS   +S            +LH+L L HN L   +   A   + +L+ LDLS+N 
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL-NFISSEAFVPVPNLRYLDLSSNH 99

Query: 468 LNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSL 517
           L+         L  LE L L NN +   +    F ++ +L     S N +
Sbjct: 100 LHTLDEFLFSDLQALEVLLLYNNHI-VVVDRNAFEDMAQLQKLYLSQNQI 148

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 61.0 bits (148), Expect = 3e-10
 Identities = 40/169 (23%), Positives = 60/169 (35%), Gaps = 20/169 (11%)

Query: 175 SNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKV 234
           S    LDLS   LS     + +    + L  L  L LS  +L+  S        +P+L+ 
Sbjct: 39  SYTALLDLSHNNLSR----LRAEWTPTRLTNLHSLLLSHNHLNFISSEAF--VPVPNLRY 92

Query: 235 LKLTKCQLCHFPPLLSANFSSLKALHLA---INNFDNSLFQYGSWVFGLRNLVFIDLSSN 291
           L L+   L      L ++  +L+ L L    I   D + F+       +  L  + LS N
Sbjct: 93  LDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFE------DMAQLQKLYLSQN 146

Query: 292 QFQGQIPIG----LRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSV 336
           Q   + P+        L  L  LDL  N         L K        +
Sbjct: 147 QIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGL 194

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 57.2 bits (138), Expect = 5e-09
 Identities = 51/204 (25%), Positives = 67/204 (32%), Gaps = 41/204 (20%)

Query: 297 IPIGLRNLTSLRHLDLRFNYFNSTTPGW-LSKFNDLEFLSVAWNSLQGTISSVGLENLTS 355
           +P  L   +    LDL  N  +     W  ++  +L  L ++ N L   ISS     + +
Sbjct: 33  VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPN 89

Query: 356 IETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDL 415
           +  LDLS N                L ++D                FS   A  LE L L
Sbjct: 90  LRYLDLSSN---------------HLHTLDE-------------FLFSDLQA--LEVLLL 119

Query: 416 SICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPP----ALGELSSLKKLDLSNNMLNGF 471
               I     N       L  L L  N +    P        +L  L  LDLS+N L   
Sbjct: 120 YNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNKLKKL 178

Query: 472 IPLSLGKLSHL--EYLDLSNNKLN 493
               L KL       L L NN L 
Sbjct: 179 PLTDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 57.2 bits (138), Expect = 6e-09
 Identities = 44/185 (23%), Positives = 66/185 (35%), Gaps = 31/185 (16%)

Query: 131 LDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNY 190
           LDLS N+   ++       L NL  L LS      +       + NL+YLDLS   L   
Sbjct: 44  LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL 103

Query: 191 DLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLS 250
           D  +      S L  LE L L   ++            +  L+ L L++ Q+  FP  L 
Sbjct: 104 DEFL-----FSDLQALEVLLLYNNHIVVVDR--NAFEDMAQLQKLYLSQNQISRFPVELI 156

Query: 251 ANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHL 310
            + + L  L L                        +DLSSN+ +      L+ L +    
Sbjct: 157 KDGNKLPKLML------------------------LDLSSNKLKKLPLTDLQKLPAWVKN 192

Query: 311 DLRFN 315
            L  +
Sbjct: 193 GLYLH 197

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 56.8 bits (137), Expect = 7e-09
 Identities = 46/202 (22%), Positives = 72/202 (35%), Gaps = 16/202 (7%)

Query: 119 NPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQ 178
             +   L +L  L LS N    I   +    + NLRYL+LS      +      +L  L+
Sbjct: 57  EWTPTRLTNLHSLLLSHNHLNFIS-SEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALE 115

Query: 179 YLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVT-NSLPSLKVLKL 237
            L L    +   D +         +  L+ L LSQ  +S+    L+   N LP L +L L
Sbjct: 116 VLLLYNNHIVVVDRNA-----FEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDL 170

Query: 238 TKCQLCHFPPLLSANFSSLKALHLAINNFDN------SLFQYGSWVFGLRNLVFIDLSSN 291
           +  +L   P        +     L ++N  N       L+Q  S  +  R L  +     
Sbjct: 171 SSNKLKKLPLTDLQKLPAWVKNGLYLHN--NPLECDCKLYQLFSH-WQYRQLSSVMDFQE 227

Query: 292 QFQGQIPIGLRNLTSLRHLDLR 313
                    L N+ SL   +  
Sbjct: 228 DLYCMHSKKLHNIFSLDFFNCS 249

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 44/249 (17%), Positives = 87/249 (34%), Gaps = 36/249 (14%)

Query: 282 NLVFIDLSSNQFQGQIPIGL-----RNLTSLRHLDLRFNYFNSTTPGWLSKF-----NDL 331
           ++  ++LS N    +    L         ++  L+L  N+ +  +   L K        +
Sbjct: 52  SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTI 111

Query: 332 EFLSVAWNSLQGT----ISSVGLENLTSIETLDLSGNSKLGGKIPTSFARL-----CKLT 382
             L + WN                   SI +L+L GN  LG K      ++       + 
Sbjct: 112 TVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQILAAIPANVN 170

Query: 383 SVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQF-----KSLHTL 437
           S++L   +L+      L  F +    ++ SLDLS   +      +L          + +L
Sbjct: 171 SLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSL 230

Query: 438 ELGHNSLFGP----LPPALGELSSLKKLDLSNNMLNGF-------IPLSLGKLSHLEYLD 486
            L  N L GP    L      L  L+ + L  +++          +  +   +  +  +D
Sbjct: 231 NLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVD 290

Query: 487 LSNNKLNAS 495
            +  +++ S
Sbjct: 291 KNGKEIHPS 299

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 56.6 bits (137), Expect = 9e-09
 Identities = 56/337 (16%), Positives = 106/337 (31%), Gaps = 56/337 (16%)

Query: 206 LEHLDLSQMNLSKASDWLLVT---NSLPSLKVLKLTKCQL-----CHFPPLLSANFSSLK 257
           +  LDLS  NL   S   L+    N+  S+  L L+   L          +L+A  +++ 
Sbjct: 24  VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83

Query: 258 ALHLAINNFDNSLFQYGSWVFGLRN--LVFIDLSSNQFQGQ----IPIGLRNL-TSLRHL 310
           +L+L+ N                    +  +DL  N F  +          NL  S+  L
Sbjct: 84  SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSL 143

Query: 311 DLRFNYFNSTTPGWLSKF-----NDLEFLSVAWNSLQGT----ISSVGLENLTSIETLDL 361
           +LR N     +   L +       ++  L++  N+L       ++        S+ +LDL
Sbjct: 144 NLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDL 203

Query: 362 SGNSKLGGKIPTSFARLCKLTSVDLSLIDLS---------QDFSQVLDTFSSCGAYALES 412
           S N  LG K     A +       +  ++L          ++   + D+        L++
Sbjct: 204 SAN-LLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKH-----LQT 257

Query: 413 LDLS---ICQISG----HLTNQLLQFKSLHTLELGHNSLFGPLPPALGEL-----SSLKK 460
           + L    +  +S      L       + +  ++     +       +  L          
Sbjct: 258 VYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADV 317

Query: 461 LDLSNNML-----NGFIPLSLGKLSHLEYLDLSNNKL 492
             L N  L     +      L     L     +   L
Sbjct: 318 PSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 61/376 (16%), Positives = 118/376 (31%), Gaps = 76/376 (20%)

Query: 126 KHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGT 185
             +  LDLS N                    NL       +I       +++  L+LSG 
Sbjct: 22  HGVTSLDLSLN--------------------NLYSISTVELIQAFANTPASVTSLNLSGN 61

Query: 186 FLSNYDLHVDSLSWL--SGLYMLEHLDLSQMNLSKA-----SDWLLVTNSLPSLKVLKLT 238
            L     + D L  +  +    +  L+LS   LS          L       ++ VL L 
Sbjct: 62  SLG--FKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPF--TITVLDLG 117

Query: 239 KCQLC-----HFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRN--LVFIDLSSN 291
                      F    S   +S+ +L+L  N+           +       +  ++L  N
Sbjct: 118 WNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN 177

Query: 292 QFQ----GQIPIGLRNL-TSLRHLDLRFNYFNSTTPGWLSKF-----NDLEFLSVAWNSL 341
                   ++   L ++  S+  LDL  N     +   L+       N +  L++  N L
Sbjct: 178 NLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCL 237

Query: 342 QGTIS---SVGLENLTSIETLDLSGNS--KLGGK----IPTSFARLCKLTSVDLSLIDLS 392
            G       +  ++L  ++T+ L  +    +  +    +  +F  + K+  VD +  ++ 
Sbjct: 238 HGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297

Query: 393 QDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPAL 452
              S  +       +  +  L          L NQ L F   H   +   ++        
Sbjct: 298 PSHSIPI-------SNLIRELSGKADVP--SLLNQCLIFAQKHQTNIEDLNI-------- 340

Query: 453 GELSSLKKLDLSNNML 468
                L++   +   L
Sbjct: 341 --PDELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 44/231 (19%), Positives = 78/231 (33%), Gaps = 40/231 (17%)

Query: 347 SVGLENLTSIETLDLSGNSKLGGKIPTSFARL-----CKLTSVDLSLIDLSQDFSQVLDT 401
                    + +LDLS N  L         +        +TS++LS   L    S  L  
Sbjct: 15  EEFTSIPHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQ 73

Query: 402 FSSCGAYALESLDLSICQISGHLTNQLLQF-----KSLHTLELGHNSLFGPLPPALGEL- 455
             +     + SL+LS   +S   +++L++       ++  L+LG N           +  
Sbjct: 74  ILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAF 133

Query: 456 ----SSLKKLDLSNNMLNGFIPLSLGKL-----SHLEYLDLSNNKLNAS----LSEIHFV 502
               +S+  L+L  N L       L ++     +++  L+L  N L +     L++    
Sbjct: 134 SNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLAS 193

Query: 503 NLTKLTWFSASGNSL----------ILKFNPNWVPPFQLETLQLRSCHLGP 543
               +T    S N L          I    PN      + +L L    L  
Sbjct: 194 IPASVTSLDLSANLLGLKSYAELAYIFSSIPN-----HVVSLNLCLNCLHG 239

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 58.6 bits (141), Expect = 2e-09
 Identities = 27/110 (24%), Positives = 40/110 (36%), Gaps = 3/110 (2%)

Query: 432 KSLHTLELGHNSLFGPLPP-ALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNN 490
           ++L  L + +      L    L  L  L+ L +  + L    P +      L  L+LS N
Sbjct: 31  ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90

Query: 491 KLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCH 540
            L  SLS      L+ L     SGN L       W+  ++ E L      
Sbjct: 91  AL-ESLSWKTVQGLS-LQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQ 138

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.4 bits (112), Expect = 6e-06
 Identities = 23/123 (18%), Positives = 37/123 (30%), Gaps = 15/123 (12%)

Query: 141 IQIPKYLGSLENLRYLNLSGAKFAGMIPLQ-LGNLSNLQYLDLSGTFLSNYDLHVDSLSW 199
           +    +L   ENL  L +   +    + L+ L  L  L+ L +  + L            
Sbjct: 21  LDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA----- 75

Query: 200 LSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTK------CQLCHFPPLLSANF 253
                 L  L+LS   L   S   +      SL+ L L+       C L           
Sbjct: 76  FHFTPRLSRLNLSFNALESLSWKTV---QGLSLQELVLSGNPLHCSCALRWLQRWEEEGL 132

Query: 254 SSL 256
             +
Sbjct: 133 GGV 135

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.9 bits (108), Expect = 2e-05
 Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 3/88 (3%)

Query: 279 GLRNLVFIDLSSNQFQGQIPIG-LRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVA 337
           G  NL  + + + Q    + +  LR L  LR+L +  +      P        L  L+++
Sbjct: 29  GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88

Query: 338 WNSLQGTISSVGLENLTSIETLDLSGNS 365
           +N+L+ ++S   ++ L S++ L LSGN 
Sbjct: 89  FNALE-SLSWKTVQGL-SLQELVLSGNP 114

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.1 bits (106), Expect = 3e-05
 Identities = 22/97 (22%), Positives = 36/97 (37%), Gaps = 10/97 (10%)

Query: 118 VNPSLVDLKHLIHLDLSGNDFEGIQ-IPKY-LGSLENLRYLNLSGAKFAGMIPLQLGNLS 175
               L   ++L  L +     + +Q +    L  L  LR L +  +    + P       
Sbjct: 23  SLHHLPGAENLTELYIENQ--QHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTP 80

Query: 176 NLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLS 212
            L  L+LS   L +  L   ++  LS    L+ L LS
Sbjct: 81  RLSRLNLSFNALES--LSWKTVQGLS----LQELVLS 111

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.6 bits (102), Expect = 1e-04
 Identities = 25/130 (19%), Positives = 38/130 (29%), Gaps = 29/130 (22%)

Query: 189 NYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPL 248
             D  +DSL  L G   L  L +      +  +   +   L  L+ L + K  L    P 
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRG-LGELRNLTIVKSGLRFVAP- 73

Query: 249 LSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLR 308
                    A H                      L  ++LS N  +  +        SL+
Sbjct: 74  --------DAFH------------------FTPRLSRLNLSFNALE-SLSWKTVQGLSLQ 106

Query: 309 HLDLRFNYFN 318
            L L  N  +
Sbjct: 107 ELVLSGNPLH 116

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 32/209 (15%), Positives = 64/209 (30%), Gaps = 10/209 (4%)

Query: 304 LTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSG 363
             S + L L   +  +      S   ++  + V+ +     + S    NL+ +  +++  
Sbjct: 30  PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 364 NSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGH 423
              L    P +   L  L  + +    L        D            L+++       
Sbjct: 90  TRNLTYIDPDALKELPLLKFLGIFNTGL----KMFPDLTKVYSTDIFFILEITDNPYMTS 145

Query: 424 LTNQLLQ--FKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSL--GKL 479
           +     Q       TL+L +N     +       + L  + L+ N     I      G  
Sbjct: 146 IPVNAFQGLCNETLTLKLYNNGF-TSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVY 204

Query: 480 SHLEYLDLSNNKLNASLSEIHFVNLTKLT 508
           S    LD+S   +  +L      +L +L 
Sbjct: 205 SGPSLLDVSQTSV-TALPSKGLEHLKELI 232

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 54.2 bits (131), Expect = 2e-08
 Identities = 41/269 (15%), Positives = 76/269 (28%), Gaps = 60/269 (22%)

Query: 225 VTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVF-GLRNL 283
           + +  PS + LKL +  L   P    +N  ++  ++++I+     L    S  F  L  +
Sbjct: 26  IPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQL---ESHSFYNLSKV 82

Query: 284 VFIDLSSNQFQGQIPIG-LRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQ 342
             I++ + +    I    L+ L  L+ L +            L  F DL  +        
Sbjct: 83  THIEIRNTRNLTYIDPDALKELPLLKFLGIFNT--------GLKMFPDLTKVY------- 127

Query: 343 GTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTF 402
                    +      L+++ N  +      +F  LC                       
Sbjct: 128 ---------STDIFFILEITDNPYMTSIPVNAFQGLCNE--------------------- 157

Query: 403 SSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPAL--GELSSLKK 460
                    +L L     +  +         L  + L  N     +      G  S    
Sbjct: 158 -------TLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSL 209

Query: 461 LDLSNNMLNGFIPLSLGKLSHLEYLDLSN 489
           LD+S   +       L  L  L   +   
Sbjct: 210 LDVSQTSVTALPSKGLEHLKELIARNTWT 238

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 18/136 (13%), Positives = 44/136 (32%), Gaps = 4/136 (2%)

Query: 410 LESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPP-ALGELSSLKKLDLSNNML 468
            ++L L    +    ++      ++  + +  +     L   +   LS +  +++ N   
Sbjct: 33  TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN 92

Query: 469 NGFIPLS-LGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVP 527
             +I    L +L  L++L + N  L          +         + N  +     N   
Sbjct: 93  LTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQ 152

Query: 528 --PFQLETLQLRSCHL 541
               +  TL+L +   
Sbjct: 153 GLCNETLTLKLYNNGF 168

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 35/212 (16%), Positives = 66/212 (31%), Gaps = 13/212 (6%)

Query: 128 LIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQL-GNLSNLQYLDLSGTF 186
              L L       I       +L N+  + +S       +      NLS + ++++    
Sbjct: 33  TQTLKLIETHLRTIP-SHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN-- 89

Query: 187 LSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTK-CQLCHF 245
               +L       L  L +L+ L +    L    D L    S     +L++T    +   
Sbjct: 90  --TRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSI 146

Query: 246 PPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIG-LRNL 304
           P      F  L    L +  ++N       + F    L  + L+ N++   I       +
Sbjct: 147 PVNA---FQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGV 203

Query: 305 TS-LRHLDLRFNYFNSTTPGWLSKFNDLEFLS 335
            S    LD+      +     L    +L   +
Sbjct: 204 YSGPSLLDVSQTSVTALPSKGLEHLKELIARN 235

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 55.5 bits (134), Expect = 2e-09
 Identities = 33/121 (27%), Positives = 50/121 (41%), Gaps = 8/121 (6%)

Query: 116 GKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLS 175
           GK+     +  +L  L L       +     L  L  L+ L LS  +  G + +    L 
Sbjct: 39  GKIEGLTAEFVNLEFLSLINVGLISVSN---LPKLPKLKKLELSENRIFGGLDMLAEKLP 95

Query: 176 NLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASD-WLLVTNSLPSLKV 234
           NL +L+LSG  L +    + +L  L  L  L+ LDL    ++  +D    V   LP L  
Sbjct: 96  NLTHLNLSGNKLKD----ISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTY 151

Query: 235 L 235
           L
Sbjct: 152 L 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 51.3 bits (123), Expect = 8e-08
 Identities = 38/147 (25%), Positives = 52/147 (35%), Gaps = 13/147 (8%)

Query: 352 NLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALE 411
              ++  L L       GKI    A    L  + L  + L       +          L+
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-----VSNLPKL--PKLK 74

Query: 412 SLDLSICQISGHLTNQLLQFKSLHTLELGHNSL--FGPLPPALGELSSLKKLDLSNN--- 466
            L+LS  +I G L     +  +L  L L  N L     L P L +L  LK LDL N    
Sbjct: 75  KLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEP-LKKLECLKSLDLFNCEVT 133

Query: 467 MLNGFIPLSLGKLSHLEYLDLSNNKLN 493
            LN +       L  L YLD  + +  
Sbjct: 134 NLNDYRESVFKLLPQLTYLDGYDREDQ 160

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 50.5 bits (121), Expect = 1e-07
 Identities = 36/119 (30%), Positives = 52/119 (43%), Gaps = 16/119 (13%)

Query: 409 ALESLDLSICQIS-GHLTNQLLQFKSLHTLELGHNSL--FGPLPPALGELSSLKKLDLSN 465
           A+  L L  C+ + G +     +F +L  L L +  L     LP     L  LKKL+LS 
Sbjct: 25  AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPK----LPKLKKLELSE 80

Query: 466 NMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEI-HFVNLTKLTWFSASGNSLILKFNP 523
           N + G + +   KL +L +L+LS NKL   +S +     L  L        SL L    
Sbjct: 81  NRIFGGLDMLAEKLPNLTHLNLSGNKLK-DISTLEPLKKLECLK-------SLDLFNCE 131

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 43.6 bits (103), Expect = 3e-05
 Identities = 28/116 (24%), Positives = 40/116 (34%), Gaps = 8/116 (6%)

Query: 131 LDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNY 190
           L L        +I        NL +L+L       +  L    L  L+ L+LS   +   
Sbjct: 29  LVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLP--KLPKLKKLELSENRIFGG 86

Query: 191 DLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFP 246
              +        L  L HL+LS   L   S  L     L  LK L L  C++ +  
Sbjct: 87  LDMLA-----EKLPNLTHLNLSGNKLKDIST-LEPLKKLECLKSLDLFNCEVTNLN 136

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 58.0 bits (140), Expect = 3e-09
 Identities = 51/252 (20%), Positives = 88/252 (34%), Gaps = 14/252 (5%)

Query: 69  CCKWAGVFCSNITGHVLQLSLQNPFSYLGGDLREVKAGSNYERSKLGGKVNPSLVDLKHL 128
           C +W  +         L L+ +N    + G L      +         +          +
Sbjct: 36  CKRWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRV 95

Query: 129 IHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLS 188
            H+DLS +  E   +   L     L+ L+L G + +  I   L   SNL  L+LSG    
Sbjct: 96  QHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC--- 152

Query: 189 NYDLHVDSLSWL-SGLYMLEHLDLSQ-MNLSKASDWLLVTNSLPSLKVLKLTKCQLC--- 243
                  +L  L S    L+ L+LS   + ++    + V +   ++  L L+  +     
Sbjct: 153 -SGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK 211

Query: 244 HFPPLLSANFSSLKALHLA-INNFDNSLFQYGSWVFGLRNLVFIDLSS-NQFQGQIPIGL 301
                L     +L  L L+      N  FQ     F L  L  + LS       +  + L
Sbjct: 212 SDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE---FFQLNYLQHLSLSRCYDIIPETLLEL 268

Query: 302 RNLTSLRHLDLR 313
             + +L+ L + 
Sbjct: 269 GEIPTLKTLQVF 280

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 49.9 bits (119), Expect = 1e-06
 Identities = 48/272 (17%), Positives = 91/272 (33%), Gaps = 40/272 (14%)

Query: 238 TKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQF-QGQ 296
               L             L    +A     + + Q  +  F    +  +DLS++      
Sbjct: 50  QTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVST 109

Query: 297 IPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGL----EN 352
           +   L   + L++L L     +      L+K ++L  L+++  S     S   L     +
Sbjct: 110 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS---GFSEFALQTLLSS 166

Query: 353 LTSIETLDLSGNSKLGGK-IPTSFARLCK-LTSVDLSLIDLSQDFSQVLDTFSSCGAYAL 410
            + ++ L+LS       K +  + A + + +T ++LS    +   S +      C    L
Sbjct: 167 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPN--L 224

Query: 411 ESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNML-- 468
             LDLS       L N   Q                       +L+ L+ L LS      
Sbjct: 225 VHLDLSDSV---MLKNDCFQ--------------------EFFQLNYLQHLSLSRCYDII 261

Query: 469 -NGFIPLSLGKLSHLEYLDLSNNKLNASLSEI 499
                 L LG++  L+ L +     + +L  +
Sbjct: 262 PETL--LELGEIPTLKTLQVFGIVPDGTLQLL 291

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 45/279 (16%), Positives = 82/279 (29%), Gaps = 61/279 (21%)

Query: 144 PKYLGSLENLRYLNLSGAKFAGMIPL-QLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSG 202
           P   G L +   +     +     PL +  +   +Q++DLS + +    LH      LS 
Sbjct: 61  PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLH----GILSQ 116

Query: 203 LYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLA 262
              L++L L  + LS     +       +L  L L+ C            FS        
Sbjct: 117 CSKLQNLSLEGLRLSDPI--VNTLAKNSNLVRLNLSGCS----------GFS-------- 156

Query: 263 INNFDNSLFQYGSWVFGLRNLVFIDLSSNQF---QGQIPIGLRNLTSLRHLDLRFNYFNS 319
               + +L    S       L  ++LS       +           ++  L+L       
Sbjct: 157 ----EFALQTLLS---SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS------ 203

Query: 320 TTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLC 379
              G+       +  ++                  ++  LDLS +  L       F +L 
Sbjct: 204 ---GYRKNLQKSDLSTLV-------------RRCPNLVHLDLSDSVMLKNDCFQEFFQLN 247

Query: 380 KLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSIC 418
            L  + LS        +  L          L++L +   
Sbjct: 248 YLQHLSLSRCYDIIPET--LLELGEI--PTLKTLQVFGI 282

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 54.3 bits (131), Expect = 5e-09
 Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 8/115 (6%)

Query: 122 LVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLD 181
             + + L  L         I     L  L  L+ L LS  + +G + +      NL +L+
Sbjct: 38  TDEFEELEFLSTINVGLTSIAN---LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94

Query: 182 LSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASD-WLLVTNSLPSLKVL 235
           LSG  + +    + ++  L  L  L+ LDL    ++  +D    V   LP L  L
Sbjct: 95  LSGNKIKD----LSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYL 145

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.5 bits (116), Expect = 5e-07
 Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 16/119 (13%)

Query: 409 ALESLDLSICQIS-GHLTNQLLQFKSLHTLELGHNSL--FGPLPPALGELSSLKKLDLSN 465
            ++ L L   + + G L     +F+ L  L   +  L     LP    +L+ LKKL+LS+
Sbjct: 18  DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLP----KLNKLKKLELSD 73

Query: 466 NMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEI-HFVNLTKLTWFSASGNSLILKFNP 523
           N ++G + +   K  +L +L+LS NK+   LS I     L  L        SL L    
Sbjct: 74  NRVSGGLEVLAEKCPNLTHLNLSGNKIK-DLSTIEPLKKLENLK-------SLDLFNCE 124

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 29/144 (20%), Positives = 48/144 (33%), Gaps = 32/144 (22%)

Query: 348 VGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGA 407
           +     + ++ L L  +    GK+        +                           
Sbjct: 11  LRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEE--------------------------- 43

Query: 408 YALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNM 467
             LE L      ++  + N L +   L  LEL  N + G L     +  +L  L+LS N 
Sbjct: 44  --LEFLSTINVGLT-SIAN-LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNK 99

Query: 468 LNGFIPLS-LGKLSHLEYLDLSNN 490
           +     +  L KL +L+ LDL N 
Sbjct: 100 IKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.4 bits (100), Expect = 7e-05
 Identities = 24/123 (19%), Positives = 43/123 (34%), Gaps = 8/123 (6%)

Query: 124 DLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLS 183
               +  L L  +     ++       E L +L+        +  L    L+ L+ L+LS
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLP--KLNKLKKLELS 72

Query: 184 GTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLC 243
              +S     +           L HL+LS   +   S  +     L +LK L L  C++ 
Sbjct: 73  DNRVSGGLEVLA-----EKCPNLTHLNLSGNKIKDLST-IEPLKKLENLKSLDLFNCEVT 126

Query: 244 HFP 246
           +  
Sbjct: 127 NLN 129

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 55.4 bits (134), Expect = 6e-09
 Identities = 35/138 (25%), Positives = 50/138 (36%), Gaps = 9/138 (6%)

Query: 411 ESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPP-ALGELSSLKKLDLSNNMLN 469
             + L    I          +K L  ++L +N +   L P A   L SL  L L  N + 
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQI-SELAPDAFQGLRSLNSLVLYGNKIT 93

Query: 470 GFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPF 529
                    L  L+ L L+ NK+N  L    F +L  L   S   N L       + P  
Sbjct: 94  ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR 152

Query: 530 QLETLQLR------SCHL 541
            ++T+ L        CHL
Sbjct: 153 AIQTMHLAQNPFICDCHL 170

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 29/137 (21%), Positives = 54/137 (39%), Gaps = 8/137 (5%)

Query: 131 LDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNY 190
           + L  N  + I  P      + LR ++LS  + + + P     L +L  L L G  ++  
Sbjct: 37  IRLEQNTIKVIP-PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL 95

Query: 191 DLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLS 250
              +       GL+ L+ L L+   ++           L +L +L L   +L        
Sbjct: 96  PKSL-----FEGLFSLQLLLLNANKINCLRVDAF--QDLHNLNLLSLYDNKLQTIAKGTF 148

Query: 251 ANFSSLKALHLAINNFD 267
           +   +++ +HLA N F 
Sbjct: 149 SPLRAIQTMHLAQNPFI 165

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 33/145 (22%), Positives = 54/145 (37%), Gaps = 22/145 (15%)

Query: 354 TSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESL 413
            +I  + L  N  +    P +F+   KL  +DLS   +S+            G  +L SL
Sbjct: 32  ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQ-----GLRSLNSL 85

Query: 414 DLSICQIS-------GHLTNQLLQFKSLHTLELGHNSLFGPLPP-ALGELSSLKKLDLSN 465
            L   +I+         L +       L  L L  N +   L   A  +L +L  L L +
Sbjct: 86  VLYGNKITELPKSLFEGLFS-------LQLLLLNANKI-NCLRVDAFQDLHNLNLLSLYD 137

Query: 466 NMLNGFIPLSLGKLSHLEYLDLSNN 490
           N L      +   L  ++ + L+ N
Sbjct: 138 NKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 25/102 (24%), Positives = 37/102 (36%), Gaps = 2/102 (1%)

Query: 286 IDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTI 345
           I L  N  +   P        LR +DL  N  +   P        L  L +  N +    
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELP 96

Query: 346 SSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLS 387
            S+  E L S++ L L+ N K+      +F  L  L  + L 
Sbjct: 97  KSL-FEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLY 136

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 40.4 bits (95), Expect = 7e-04
 Identities = 28/138 (20%), Positives = 46/138 (33%), Gaps = 26/138 (18%)

Query: 191 DLHVDSLSWLS-----GLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHF 245
            L  +++  +          L  +DLS   +S+ +        L SL  L L   ++   
Sbjct: 38  RLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAF--QGLRSLNSLVLYGNKITEL 95

Query: 246 PPLLSANFSSLKALHLAINN--------FDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQI 297
           P  L     SL+ L L  N         F +           L NL  + L  N+ Q   
Sbjct: 96  PKSLFEGLFSLQLLLLNANKINCLRVDAFQD-----------LHNLNLLSLYDNKLQTIA 144

Query: 298 PIGLRNLTSLRHLDLRFN 315
                 L +++ + L  N
Sbjct: 145 KGTFSPLRAIQTMHLAQN 162

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 57.6 bits (139), Expect = 6e-09
 Identities = 67/422 (15%), Positives = 123/422 (29%), Gaps = 61/422 (14%)

Query: 125 LKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKF---AGMIPLQLGNLSNLQYLD 181
              L  + L         +     S +N + L LS  +     G+  +      NL+ LD
Sbjct: 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAI-AATCRNLKELD 162

Query: 182 LSGTFLSNYDLHVDSLSWLS-GLYMLEHLDLSQM-NLSKASDWLLVTNSLPSLKVLKLTK 239
           L  + +   D+    LS        L  L++S + +    S    +    P+LK LKL +
Sbjct: 163 LRESDVD--DVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNR 220

Query: 240 C------------------------------QLCHFPPLLSANFSSLKALHLAINNFDNS 269
                                           +     +  +    L+ L    +     
Sbjct: 221 AVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAY 280

Query: 270 LFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGL-RNLTSLRHLDLRFNYFNSTTPGWLSKF 328
           L    S       L  ++LS    Q    + L      L+ L +     ++      S  
Sbjct: 281 LPAVYS---VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTC 337

Query: 329 NDLEFLSVAW-----NSLQGTISSVGLE----NLTSIETLDLSGNSKLGGKIPTSFARLC 379
            DL  L V             ++  GL         +E++ L    ++      + AR  
Sbjct: 338 KDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESV-LYFCRQMTNAALITIARNR 396

Query: 380 -KLTSVDLSLIDLSQDFS---QVLD---TFSSCGAYALESLDLSICQISGHLTNQLLQFK 432
             +T   L +I+         + LD            L  L LS               K
Sbjct: 397 PNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAK 456

Query: 433 SLHTLELGHNSLFGPLPPALGE-LSSLKKLDLSN-NMLNGFIPLSLGKLSHLEYLDLSNN 490
            +  L +            +     SL+KL++ +    +  +  +  KL  +  L +S+ 
Sbjct: 457 KMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSC 516

Query: 491 KL 492
            +
Sbjct: 517 SV 518

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 54.1 bits (130), Expect = 8e-08
 Identities = 51/278 (18%), Positives = 92/278 (33%), Gaps = 31/278 (11%)

Query: 245 FPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNL 304
            P  +   F  ++++ L            G   F   NLV        +   I     + 
Sbjct: 57  SPATVIRRFPKVRSVEL-----------KGKPHFADFNLVPDGWGGYVYPW-IEAMSSSY 104

Query: 305 TSLRHLDLRFNYFNSTTPGWLSK-FNDLEFLSVAWNSLQGTISSVGL----ENLTSIETL 359
           T L  + L+           ++K F + + L ++        S+ GL        +++ L
Sbjct: 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE---GFSTDGLAAIAATCRNLKEL 161

Query: 360 DLSGN--SKLGGKIPTSFARLC-KLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLS 416
           DL  +    + G   + F      L S+++S +     FS +    + C    L+SL L+
Sbjct: 162 DLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPN--LKSLKLN 219

Query: 417 ICQISGHLTNQLLQFKSLHTLELG------HNSLFGPLPPALGELSSLKKLDLSNNMLNG 470
                  L   L +   L  L  G         ++  L  AL     L+ L    + +  
Sbjct: 220 RAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPA 279

Query: 471 FIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLT 508
           ++P      S L  L+LS   + +           KL 
Sbjct: 280 YLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQ 317

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 53.4 bits (128), Expect = 1e-07
 Identities = 52/321 (16%), Positives = 107/321 (33%), Gaps = 41/321 (12%)

Query: 152 NLRYLNLSGAKFAGMIPLQ---------------LGNLSNLQYLDLSGTFLSNYDLHVDS 196
            +R + L G        L                  + + L+ + L    +++     D 
Sbjct: 67  KVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTD-----DC 121

Query: 197 LSWLS-GLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQL----CHFPPLLSA 251
           L  ++      + L LS            +  +  +LK L L +  +     H+      
Sbjct: 122 LELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181

Query: 252 NFSSLKALHLAI--NNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRH 309
            ++SL +L+++   +    S  +    V    NL  + L+      ++   L+    L  
Sbjct: 182 TYTSLVSLNISCLASEVSFSALE--RLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEE 239

Query: 310 LDLRFNYFNSTTPGW------LSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSG 363
           L             +      LS   +L  LS  W+++   + +V     + + TL+LS 
Sbjct: 240 LGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAV-YSVCSRLTTLNLSY 298

Query: 364 NSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGH 423
            +     +     +  KL    L ++D  +D    L+  +S     L  L +   +    
Sbjct: 299 ATVQSYDLVKLLCQCPKLQR--LWVLDYIEDAG--LEVLASTCK-DLRELRVFPSEPFVM 353

Query: 424 LTNQLLQFKSLHTLELGHNSL 444
             N  L  + L ++ +G   L
Sbjct: 354 EPNVALTEQGLVSVSMGCPKL 374

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 44.9 bits (106), Expect = 5e-05
 Identities = 50/328 (15%), Positives = 100/328 (30%), Gaps = 47/328 (14%)

Query: 120 PSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQY 179
           P L +L                 +   L   + LR L+         +P      S L  
Sbjct: 235 PQLEELG-TGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTT 293

Query: 180 LDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTK 239
           L+LS   + +YDL    +  L     L+ L +    +  A    ++ ++   L+ L++  
Sbjct: 294 LNLSYATVQSYDL----VKLLCQCPKLQRLWVLD-YIEDAG-LEVLASTCKDLRELRVFP 347

Query: 240 CQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPI 299
            +     P ++     L ++                   G   L  +     Q      I
Sbjct: 348 SEPFVMEPNVALTEQGLVSV-----------------SMGCPKLESVLYFCRQMTNAALI 390

Query: 300 GL-RNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIET 358
            + RN  ++                 L          +    L     ++ +E+   +  
Sbjct: 391 TIARNRPNMTRFR-------------LCIIEPKAPDYLTLEPLDIGFGAI-VEHCKDLRR 436

Query: 359 LDLSGNSKLGGKIPTSFARLCK-LTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSI 417
           L LSG   L  K+        K +  + ++    S D   +    S C   +L  L++  
Sbjct: 437 LSLSGL--LTDKVFEYIGTYAKKMEMLSVAFAGDS-DLG-MHHVLSGCD--SLRKLEIRD 490

Query: 418 CQISG-HLTNQLLQFKSLHTLELGHNSL 444
           C      L     + +++ +L +   S+
Sbjct: 491 CPFGDKALLANASKLETMRSLWMSSCSV 518

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 56.5 bits (136), Expect = 1e-08
 Identities = 64/379 (16%), Positives = 114/379 (30%), Gaps = 67/379 (17%)

Query: 175 SNLQYLDLSG------TFLSNYDLHVDSLSWL----SGLYMLEHLDLSQMNLSKASDWLL 224
            NL+ L L G        L   +       W+    + L  L+ +   +M +S      L
Sbjct: 73  PNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRL 132

Query: 225 VTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLV 284
                  L+ LKL KC            F++   L +  +                R + 
Sbjct: 133 AKARADDLETLKLDKCS----------GFTTDGLLSIVTH---------------CRKIK 167

Query: 285 FIDLSSNQFQGQIPIGL----RNLTSLRHLDLRFNYFNSTTPGWLSKF----NDLEFLSV 336
            + +  + F  +    L    ++ TSL  L+     F   +P  L         L  + V
Sbjct: 168 TLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKV 227

Query: 337 AWNSLQGTISSVGL-ENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDF 395
               +   +  VG  +   ++E       ++  G        +       L L  +  + 
Sbjct: 228 GDFEI---LELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNE 284

Query: 396 SQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQ-FKSLHTLELGHNSLFGPLPPALGE 454
             +L  F++     +  LDL    +       L+Q   +L  LE  +      L      
Sbjct: 285 MPILFPFAA----QIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQY 340

Query: 455 LSSLKKLDLSNNMLNGFIPLSLGKLS------------HLEYLDLSNNKL-NASLSEI-- 499
              LK+L +        +    G +S             LEY+ +  + + N SL  I  
Sbjct: 341 CKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGT 400

Query: 500 HFVNLTKLTWFSASGNSLI 518
           +  NL             I
Sbjct: 401 YLKNLCDFRLVLLDREERI 419

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 54.2 bits (130), Expect = 7e-08
 Identities = 70/475 (14%), Positives = 134/475 (28%), Gaps = 83/475 (17%)

Query: 127 HLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTF 186
           +L  L L G         K   ++ NL   N  G     +  +   NL  L+ +      
Sbjct: 74  NLRSLKLKG---------KPRAAMFNLIPENWGGYVTPWVTEI-SNNLRQLKSVHFRRMI 123

Query: 187 LSNYDLHVDSLSWLSGL-----------------------YMLEHLDLSQMNLSKASDWL 223
           +S+ DL   + +    L                         ++ L + + + S+     
Sbjct: 124 VSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKW 183

Query: 224 LVT--NSLPSLKVLKLTKCQLCHFPP----LLSANFSSLKALHLAINNF--DNSLFQYGS 275
           L        SL+VL     +     P     ++ N  SL ++ +           F+  +
Sbjct: 184 LHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAA 243

Query: 276 WVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLS 335
               L       L+ +    +  + L     L  L L      +  P        +  L 
Sbjct: 244 ---NLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLS-YMGPNEMPILFPFAAQIRKLD 299

Query: 336 VAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCK-LTSVDLSLIDLSQD 394
           + +  L+       ++   ++E L+      +G +     A+ CK L  + +      Q 
Sbjct: 300 LLYALLETEDHCTLIQKCPNLEVLETRNV--IGDRGLEVLAQYCKQLKRLRIERGADEQG 357

Query: 395 FSQVLDTFSSCGAYA-------LESLDLSICQIS----GHLTNQLLQFKSLHTLELGHNS 443
                   S  G  A       LE + + +  I+      +   L        + L    
Sbjct: 358 MEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREE 417

Query: 444 LFGPLPPALG------ELSSLKKLDLSNNMLN----GFIPLSLGKLSHLEYLDLSNNKL- 492
               LP   G          L++             G   +      ++ ++ L      
Sbjct: 418 RITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQY-SPNVRWMLLGYVGES 476

Query: 493 NASLSEI--HFVNLTKL----TWFSASGNSLILKFNPNWVPPFQLETLQLRSCHL 541
           +  L E      NL KL      FS    +  +   P+      L  L ++    
Sbjct: 477 DEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPS------LRYLWVQGYRA 525

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 45.7 bits (108), Expect = 3e-05
 Identities = 45/338 (13%), Positives = 86/338 (25%), Gaps = 67/338 (19%)

Query: 125 LKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGA-KFAGMIPLQLGNLSNLQYLDLS 183
              +  LDL     E       +    NL  L         G+  L       L+ L + 
Sbjct: 292 AAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVL-AQYCKQLKRLRIE 350

Query: 184 GTFLSNYDLHVDSLSWLSGLY-------MLEHLDLSQMNLSKASDWLLVTNSLPSLKVLK 236
                      + L    GL         LE++ +   +++  S   + T  L +L   +
Sbjct: 351 RGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTY-LKNLCDFR 409

Query: 237 LTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQ-- 294
           L                       +     DN +        G + L        Q    
Sbjct: 410 LVLLDREE---------------RITDLPLDNGVRSLLI---GCKKLRRFAFYLRQGGLT 451

Query: 295 --GQIPIGLRNLTSLRHLDLRFNYFNSTTPGW---LSKFNDLEFLSVAWNSLQGTISSVG 349
             G   IG +   ++R + L +     +  G         +L+ L +          +  
Sbjct: 452 DLGLSYIG-QYSPNVRWMLLGYV--GESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAA 508

Query: 350 LENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYA 409
           +  L S+  L + G                + +     L+ +++ +              
Sbjct: 509 VTKLPSLRYLWVQG---------------YRASMTGQDLMQMARPYWN------------ 541

Query: 410 LESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGP 447
           +E +                     H L   + SL G 
Sbjct: 542 IELIPSRRVPEVNQQGEIREMEHPAHILA--YYSLAGQ 577

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 53.5 bits (129), Expect = 2e-08
 Identities = 22/112 (19%), Positives = 42/112 (37%), Gaps = 8/112 (7%)

Query: 125 LKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSG 184
           L     +D S N+   +        L  L+ L ++  +   +       L +L  L L+ 
Sbjct: 41  LDQFDAIDFSDNEIRKLD---GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTN 97

Query: 185 TFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASD-WLLVTNSLPSLKVL 235
             L      +  L  L+ L  L +L + +  ++      L V   +P ++VL
Sbjct: 98  NSLVE----LGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVL 145

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 25/109 (22%), Positives = 38/109 (34%), Gaps = 9/109 (8%)

Query: 410 LESLDLSICQISGHLTNQLLQFKSLHTLELGHNSL--FGPLPPALGELSSLKKLDLSNNM 467
              LDL   +I   + N          ++   N +      P     L  LK L ++NN 
Sbjct: 21  DRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFPL----LRRLKTLLVNNNR 75

Query: 468 LNGFIPLSLGKLSHLEYLDLSNNKLNASLSEI-HFVNLTKLTWFSASGN 515
           +          L  L  L L+NN L   L ++    +L  LT+     N
Sbjct: 76  ICRIGEGLDQALPDLTELILTNNSL-VELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 37/150 (24%), Positives = 52/150 (34%), Gaps = 19/150 (12%)

Query: 349 GLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTS--VDLSLIDLSQDFSQVLDTFSSCG 406
              N      LDL G      KIP     +  L +       ID S +  + LD F    
Sbjct: 14  QYTNAVRDRELDLRGY-----KIP----VIENLGATLDQFDAIDFSDNEIRKLDGFPLL- 63

Query: 407 AYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSL--FGPLPPALGELSSLKKLDLS 464
              L++L ++  +I             L  L L +NSL   G L P L  L SL  L + 
Sbjct: 64  -RRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDP-LASLKSLTYLCIL 121

Query: 465 NN---MLNGFIPLSLGKLSHLEYLDLSNNK 491
            N       +    + K+  +  LD    K
Sbjct: 122 RNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 54.2 bits (131), Expect = 3e-08
 Identities = 56/222 (25%), Positives = 88/222 (39%), Gaps = 26/222 (11%)

Query: 286 IDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTI 345
           +D SS +    IP  +      + LDL+ N  +S       +   L  L +  N LQ T+
Sbjct: 21  VDCSSKKLT-AIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TL 76

Query: 346 SSVGLENLTSIETLDLSGNSKLGGKIPTS-FARLCKLTSVDLSLIDLSQDFSQVLDTFSS 404
            +   + L ++ETL ++ N KL   +P   F +L  L  + L    L     +V D+ + 
Sbjct: 77  PAGIFKELKNLETLWVTDN-KLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT- 133

Query: 405 CGAYALESLDLSICQISG-------HLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSS 457
                L  L L   ++          LT+       L  L L +N L      A  +L+ 
Sbjct: 134 ----KLTYLSLGYNELQSLPKGVFDKLTS-------LKELRLYNNQLKRVPEGAFDKLTE 182

Query: 458 LKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEI 499
           LK L L NN L      +   L  L+ L L  N  + + + I
Sbjct: 183 LKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGI 224

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 52.7 bits (127), Expect = 8e-08
 Identities = 48/215 (22%), Positives = 80/215 (37%), Gaps = 39/215 (18%)

Query: 152 NLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDL 211
           + + L+L   K + +       L+ L+ L L+   L        +L   +G         
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-------TLP--AG--------- 79

Query: 212 SQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLF 271
                        +   L +L+ L +T  +L   P  +     +L  L L  N    SL 
Sbjct: 80  -------------IFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQL-KSL- 124

Query: 272 QYGSWVF-GLRNLVFIDLSSNQFQGQIPIGL-RNLTSLRHLDLRFNYFNSTTPGWLSKFN 329
                VF  L  L ++ L  N+ Q  +P G+   LTSL+ L L  N       G   K  
Sbjct: 125 --PPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLT 181

Query: 330 DLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGN 364
           +L+ L +  N L+  +     ++L  ++ L L  N
Sbjct: 182 ELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 46/165 (27%), Positives = 64/165 (38%), Gaps = 9/165 (5%)

Query: 354 TSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESL 413
              + LDL  N KL      +F RL KL  + L+   L    + +           LE+L
Sbjct: 37  ADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELK-----NLETL 90

Query: 414 DLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPP-ALGELSSLKKLDLSNNMLNGFI 472
            ++  ++         Q  +L  L L  N L   LPP     L+ L  L L  N L    
Sbjct: 91  WVTDNKLQALPIGVFDQLVNLAELRLDRNQL-KSLPPRVFDSLTKLTYLSLGYNELQSLP 149

Query: 473 PLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSL 517
                KL+ L+ L L NN+L   + E  F  LT+L       N L
Sbjct: 150 KGVFDKLTSLKELRLYNNQL-KRVPEGAFDKLTELKTLKLDNNQL 193

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 48/186 (25%), Positives = 69/186 (37%), Gaps = 13/186 (6%)

Query: 131 LDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNY 190
           LDL  N    +   K    L  LR L L+  K   +       L NL+ L ++   L   
Sbjct: 42  LDLQSNKLSSLP-SKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL 100

Query: 191 DLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLS 250
            + V        L  L  L L +  L        V +SL  L  L L   +L   P  + 
Sbjct: 101 PIGV-----FDQLVNLAELRLDRNQLKSLPPR--VFDSLTKLTYLSLGYNELQSLPKGVF 153

Query: 251 ANFSSLKALHLAINNFDNSLFQYGSWVF-GLRNLVFIDLSSNQFQGQIPIGLRNLTSLRH 309
              +SLK L L    ++N L +     F  L  L  + L +NQ +        +L  L+ 
Sbjct: 154 DKLTSLKELRL----YNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKM 209

Query: 310 LDLRFN 315
           L L+ N
Sbjct: 210 LQLQEN 215

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 52.0 bits (125), Expect = 6e-08
 Identities = 26/107 (24%), Positives = 47/107 (43%), Gaps = 12/107 (11%)

Query: 259 LHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFN 318
           LH  I   +       + +  L+    + LS+N  + +I   L  + +LR L L  N   
Sbjct: 30  LHGMIPPIEKM----DATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNLI- 82

Query: 319 STTPGWLSKFNDLEFLSVAWNSLQGTISSV-GLENLTSIETLDLSGN 364
                  +  + LE L +++N     I+S+ G+E L ++  L +S N
Sbjct: 83  KKIENLDAVADTLEELWISYNQ----IASLSGIEKLVNLRVLYMSNN 125

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 35/135 (25%), Positives = 56/135 (41%), Gaps = 12/135 (8%)

Query: 117 KVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSN 176
           K++ +L  LK   HL LS N+ E I     L  +ENLR L+L       +  L       
Sbjct: 39  KMDATLSTLKACKHLALSTNNIEKIS---SLSGMENLRILSLGRNLIKKIENLD-AVADT 94

Query: 177 LQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLK 236
           L+ L +S   ++       SLS +  L  L  L +S   ++   + +    +L  L+ L 
Sbjct: 95  LEELWISYNQIA-------SLSGIEKLVNLRVLYMSNNKITNWGE-IDKLAALDKLEDLL 146

Query: 237 LTKCQLCHFPPLLSA 251
           L    L +     +A
Sbjct: 147 LAGNPLYNDYKENNA 161

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 36/159 (22%), Positives = 62/159 (38%), Gaps = 14/159 (8%)

Query: 375 FARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAY-ALESLDLS---ICQISGHLTNQLLQ 430
           F     + + +   ++L      +    ++     A + L LS   I +IS      L  
Sbjct: 14  FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS-----LSG 68

Query: 431 FKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNN 490
            ++L  L LG N +   +        +L++L +S N +     +   KL +L  L +SNN
Sbjct: 69  MENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIASLSGIE--KLVNLRVLYMSNN 125

Query: 491 KLNASLSEI-HFVNLTKLTWFSASGNSLILKFNPNWVPP 528
           K+  +  EI     L KL     +GN L   +  N    
Sbjct: 126 KI-TNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATS 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 19/109 (17%), Positives = 41/109 (37%), Gaps = 4/109 (3%)

Query: 411 ESLDLSICQISG-HLTNQLLQFKSLHTLELGHNSLFGPLPP-ALGELSSLKKLDLSNNML 468
             L L+  + +    T    +   L  +   +N +   +   A    S + ++ L++N L
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKI-TDIEEGAFEGASGVNEILLTSNRL 93

Query: 469 NGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSL 517
                     L  L+ L L +N++   +    F+ L+ +   S   N +
Sbjct: 94  ENVQHKMFKGLESLKTLMLRSNRI-TCVGNDSFIGLSSVRLLSLYDNQI 141

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 31/137 (22%), Positives = 53/137 (38%), Gaps = 7/137 (5%)

Query: 230 PSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVF-GLRNLVFIDL 288
                L+L   +        +  F  L  L   IN  +N +       F G   +  I L
Sbjct: 32  QYTAELRLNNNEFTVLEA--TGIFKKLPQLRK-INFSNNKITDIEEGAFEGASGVNEILL 88

Query: 289 SSNQFQGQIPIGL-RNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISS 347
           +SN+ +  +   + + L SL+ L LR N             + +  LS+  N +  T++ 
Sbjct: 89  TSNRLEN-VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT-TVAP 146

Query: 348 VGLENLTSIETLDLSGN 364
              + L S+ TL+L  N
Sbjct: 147 GAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 47.0 bits (112), Expect = 5e-06
 Identities = 31/137 (22%), Positives = 51/137 (37%), Gaps = 7/137 (5%)

Query: 131 LDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNY 190
           L L+ N+F  ++       L  LR +N S  K   +        S +  + L+   L N 
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENV 96

Query: 191 DLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLS 250
              +       GL  L+ L L    ++   +       L S+++L L   Q+    P   
Sbjct: 97  QHKM-----FKGLESLKTLMLRSNRITCVGN--DSFIGLSSVRLLSLYDNQITTVAPGAF 149

Query: 251 ANFSSLKALHLAINNFD 267
               SL  L+L  N F+
Sbjct: 150 DTLHSLSTLNLLANPFN 166

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 2/81 (2%)

Query: 437 LELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASL 496
           L L  N     +P  L     L  +DLSNN ++     S   ++ L  L LS N+L   +
Sbjct: 36  LYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL-RCI 93

Query: 497 SEIHFVNLTKLTWFSASGNSL 517
               F  L  L   S  GN +
Sbjct: 94  PPRTFDGLKSLRLLSLHGNDI 114

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 459 KKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSL 517
            +L L  N     +P  L    HL  +DLSNN++ ++LS   F N+T+L     S N L
Sbjct: 34  TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRI-STLSNQSFSNMTQLLTLILSYNRL 90

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 3/87 (3%)

Query: 279 GLRNLVFIDLSSNQFQGQIPIGL-RNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVA 337
             ++L  IDLS+N+    +      N+T L  L L +N      P        L  LS+ 
Sbjct: 52  NYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110

Query: 338 WNSLQGTISSVGLENLTSIETLDLSGN 364
            N +   +      +L+++  L +  N
Sbjct: 111 GNDIS-VVPEGAFNDLSALSHLAIGAN 136

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 50/216 (23%), Positives = 80/216 (37%), Gaps = 44/216 (20%)

Query: 305 TSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGN 364
                 +L+            ++ N ++ +    + ++   S  G++ L ++  L L GN
Sbjct: 19  AETIKANLKKKSVTDAVTQ--NELNSIDQIIANNSDIK---SVQGIQYLPNVRYLALGGN 73

Query: 365 --SKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISG 422
               +      +   L  LT + L+   L    + V D                      
Sbjct: 74  KLHDIS-----ALKELTNLTYLILTGNQLQSLPNGVFD---------------------- 106

Query: 423 HLTNQLLQFKSLHTLELGHNSLFGPLPPAL-GELSSLKKLDLSNNMLNGFIPLSLGKLSH 481
            LTN       L  L L  N L   LP  +  +L++L  L+L++N L         KL++
Sbjct: 107 KLTN-------LKELVLVENQL-QSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTN 158

Query: 482 LEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSL 517
           L  LDLS N+L  SL E  F  LT+L       N L
Sbjct: 159 LTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQL 193

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 43.9 bits (104), Expect = 7e-05
 Identities = 54/216 (25%), Positives = 87/216 (40%), Gaps = 27/216 (12%)

Query: 154 RYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQ 213
              NL        +      L+++  +  + + +        S+  +  L  + +L L  
Sbjct: 22  IKANLKKKSVTDAVTQN--ELNSIDQIIANNSDIK-------SVQGIQYLPNVRYLALGG 72

Query: 214 MNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQY 273
             L      +     L +L  L LT  QL   P  +    ++LK L L     +N L   
Sbjct: 73  NKLHD----ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV----ENQLQSL 124

Query: 274 GSWVF-GLRNLVFIDLSSNQFQGQIPIGL-RNLTSLRHLDLRFNYFNSTTPGWLSKFNDL 331
              VF  L NL +++L+ NQ Q  +P G+   LT+L  LDL +N   S   G   K   L
Sbjct: 125 PDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQL 183

Query: 332 EFLSVAWNSLQGTISSV---GLENLTSIETLDLSGN 364
           + L +  N L+    SV     + LTS++ + L  N
Sbjct: 184 KDLRLYQNQLK----SVPDGVFDRLTSLQYIWLHDN 215

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 50.0 bits (118), Expect = 1e-06
 Identities = 31/167 (18%), Positives = 59/167 (35%), Gaps = 24/167 (14%)

Query: 342 QGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDT 401
           Q  +S V L+ +  +  L + G + L             L S+++    L      V++ 
Sbjct: 161 QVDLSPV-LDAMPLLNNLKIKGTNNLS----IGKKPRPNLKSLEIISGGLP---DSVVED 212

Query: 402 FSSCGAYALESLDLSICQ--ISGHLTNQLLQ-------FKSLHTLELGHNSLFGPLPPAL 452
                   LE L L +            + +       F +L  L +        +    
Sbjct: 213 ILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMF 272

Query: 453 GE---LSSLKKLDLSNNML--NGFIPL--SLGKLSHLEYLDLSNNKL 492
            E   L  L+ +D+S  +L   G   L   + K+ HL+++++  N L
Sbjct: 273 LESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 46.5 bits (109), Expect = 1e-05
 Identities = 39/216 (18%), Positives = 80/216 (37%), Gaps = 21/216 (9%)

Query: 123 VDLKHLIHLDLSGNDFEGIQIPKYLGSL-ENLRYLNLSGAKFAGMIPLQLGNLSNLQYLD 181
             L  L  + +    +EG         + EN          F G I  +   +S ++ +D
Sbjct: 104 KKLPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVD 163

Query: 182 LSGTFLSNYDLHVDSLSWLSGLYM-------LEHLDLSQMNLSKASDWLLVTNSLPSLKV 234
           LS    +   L+   +   + L +       L+ L++    L  +    ++ + LP+L+ 
Sbjct: 164 LSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEK 223

Query: 235 LKLTK--------CQLCHFPPLLSAN-FSSLKALHLAINNFDNSLFQYGSWVFGLRNLVF 285
           L L            +  F PL S + F +LK L +      N + +       L  L  
Sbjct: 224 LVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLET 283

Query: 286 IDLSSNQFQG----QIPIGLRNLTSLRHLDLRFNYF 317
           +D+S+          +   +  +  L+ +++++NY 
Sbjct: 284 MDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 48/160 (30%), Positives = 68/160 (42%), Gaps = 10/160 (6%)

Query: 207 EHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNF 266
           E LDL    L+  SD       L  L  L L   QL      +  + + L  L LA    
Sbjct: 38  EKLDLQSTGLATLSD--ATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA---- 91

Query: 267 DNSLFQYGSWVF-GLRNLVFIDLSSNQFQGQIPIGL-RNLTSLRHLDLRFNYFNSTTPGW 324
           +N L      VF  L  L  + L  NQ +  +P G+   LT L+ L L  N   S   G 
Sbjct: 92  NNQLASLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQSIPAGA 150

Query: 325 LSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGN 364
             K  +L+ LS++ N LQ ++     + L  ++T+ L GN
Sbjct: 151 FDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 55/213 (25%), Positives = 80/213 (37%), Gaps = 60/213 (28%)

Query: 305 TSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGN 364
                LDL+     + +         L +L++ +N LQ T+S+   ++LT + TL L+ N
Sbjct: 35  ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANN 93

Query: 365 SKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHL 424
                          +L S+ L + D                                HL
Sbjct: 94  ---------------QLASLPLGVFD--------------------------------HL 106

Query: 425 TNQLLQFKSLHTLELGHNSLFGPLPP-ALGELSSLKKLDLSNNMLNGFIPLSL-GKLSHL 482
           T        L  L LG N L   LP      L+ LK+L L+ N L   IP     KL++L
Sbjct: 107 TQ-------LDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQS-IPAGAFDKLTNL 157

Query: 483 EYLDLSNNKLNASLSEIHFVNLTKLTWFSASGN 515
           + L LS N+L  S+    F  L KL   +  GN
Sbjct: 158 QTLSLSTNQL-QSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 26/81 (32%), Positives = 34/81 (41%), Gaps = 1/81 (1%)

Query: 437 LELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASL 496
           L+L    L          L+ L  L+L  N L          L+ L  L L+NN+L ASL
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASL 98

Query: 497 SEIHFVNLTKLTWFSASGNSL 517
               F +LT+L      GN L
Sbjct: 99  PLGVFDHLTQLDKLYLGGNQL 119

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 4/83 (4%)

Query: 437 LELGHNSLFGPLPPA--LGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNA 494
           L L  N L G +      G L  L KL+L  N L G  P +    SH++ L L  NK+  
Sbjct: 34  LLLNDNEL-GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK- 91

Query: 495 SLSEIHFVNLTKLTWFSASGNSL 517
            +S   F+ L +L   +   N +
Sbjct: 92  EISNKMFLGLHQLKTLNLYDNQI 114

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 3/87 (3%)

Query: 279 GLRNLVFIDLSSNQFQGQIPIGL-RNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVA 337
            L +LV ++L  NQ  G I        + ++ L L  N     +       + L+ L++ 
Sbjct: 52  RLPHLVKLELKRNQLTG-IEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLY 110

Query: 338 WNSLQGTISSVGLENLTSIETLDLSGN 364
            N +   +     E+L S+ +L+L+ N
Sbjct: 111 DNQIS-CVMPGSFEHLNSLTSLNLASN 136

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 38/124 (30%), Positives = 53/124 (42%), Gaps = 10/124 (8%)

Query: 267 DNSLFQYGSWVF-GLRNLVFIDLSSNQFQGQIPIGL-RNLTSLRHLDLRFNYFNSTTPGW 324
           DN + +    VF  L NL  + L SNQ    +P+G+  +LT L  LDL  N         
Sbjct: 49  DNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLTVLPSAV 107

Query: 325 LSKFNDLEFLSVAWNSLQGTISSV--GLENLTSIETLDLSGNSKLGGKIPTSFARLCKLT 382
             +   L+ L +  N L      +  G+E LT +  L L  N +L      +F RL  LT
Sbjct: 108 FDRLVHLKELFMCCNKLT----ELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLT 162

Query: 383 SVDL 386
              L
Sbjct: 163 HAYL 166

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 34/108 (31%), Positives = 43/108 (39%), Gaps = 4/108 (3%)

Query: 411 ESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPAL-GELSSLKKLDLSNNMLN 469
           + L L   QI+           +L  L LG N L G LP  +   L+ L  LDL  N L 
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT 101

Query: 470 GFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSL 517
                   +L HL+ L +  NKL   L       LT LT  +   N L
Sbjct: 102 VLPSAVFDRLVHLKELFMCCNKLT-ELPR-GIERLTHLTHLALDQNQL 147

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 40.4 bits (95), Expect = 7e-04
 Identities = 37/140 (26%), Positives = 54/140 (38%), Gaps = 25/140 (17%)

Query: 207 EHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINN- 265
           + L L    ++K      V +SL +LK L L   QL   P  +  + + L  L L  N  
Sbjct: 43  QILYLHDNQITKLEPG--VFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL 100

Query: 266 -------FDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFN 318
                  FD            L +L  + +  N+    +P G+  LT L HL L  N   
Sbjct: 101 TVLPSAVFDR-----------LVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLK 148

Query: 319 STTPGWLSKFNDLEFLSVAW 338
           S   G    F+ L  L+ A+
Sbjct: 149 SIPHG---AFDRLSSLTHAY 165

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 35/108 (32%), Positives = 47/108 (43%), Gaps = 3/108 (2%)

Query: 411 ESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPAL-GELSSLKKLDLSNNMLN 469
             LDL    +         +  SL  L LG N L   LP  +  +L+SL  L+LS N L 
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKL-QSLPNGVFNKLTSLTYLNLSTNQLQ 89

Query: 470 GFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSL 517
                   KL+ L+ L L+ N+L  SL +  F  LT+L       N L
Sbjct: 90  SLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQL 136

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 42.6 bits (101), Expect = 7e-05
 Identities = 28/81 (34%), Positives = 34/81 (41%), Gaps = 1/81 (1%)

Query: 437 LELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASL 496
           LEL  N L         +L+ L KL LS N +         KL+ L  L L  NKL  SL
Sbjct: 33  LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ-SL 91

Query: 497 SEIHFVNLTKLTWFSASGNSL 517
               F  LT+L   +   N L
Sbjct: 92  PNGVFDKLTQLKELALDTNQL 112

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 8e-05
 Identities = 78/526 (14%), Positives = 150/526 (28%), Gaps = 173/526 (32%)

Query: 42  REALLKLKQDLIDPSNRLASWNTGDGDCCKW--AGVFCSNITGHVLQLSLQNPFSYLGGD 99
           R+ALL+L+     P+  +     G     K   A   C +   + +Q  +     +L   
Sbjct: 141 RQALLELR-----PAKNVLID--GVLGSGKTWVALDVCLS---YKVQCKMDFKIFWL--- 187

Query: 100 LREVKAGSNYERSKLGGKVNPS-----LVDLKHLIHLDLSGNDFEGIQIPKYLGSLEN-L 153
                         L    +P      L  L + I  + +        I   + S++  L
Sbjct: 188 -------------NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234

Query: 154 RYLNLSGAKFAGMIPLQLGNLSN---LQYLDLSGTFL-------------SNYDLHVDSL 197
           R L L    +   + L L N+ N       +LS   L             +    H+   
Sbjct: 235 RRL-LKSKPYENCL-LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292

Query: 198 SWLSGLYMLEHLDLSQMNLSKASDWLLV-TNSLPSLKVLKLTKCQLCHFPPLLSANFSSL 256
                L   E   L    L K   +L      LP          ++    P   +  +  
Sbjct: 293 HHSMTLTPDEVKSL----LLK---YLDCRPQDLPR---------EVLTTNPRRLSIIAES 336

Query: 257 KALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNY 316
             +   +  +DN  +++              ++ ++    I   L  L      + R   
Sbjct: 337 --IRDGLATWDN--WKH--------------VNCDKLTTIIESSLNVLEP---AEYR-KM 374

Query: 317 FNSTTPGWLSKFND-----LEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKI 371
           F+      LS F          LS+ W             ++   + + +          
Sbjct: 375 FDR-----LSVFPPSAHIPTILLSLIWF------------DVIKSDVMVV---------- 407

Query: 372 PTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQF 431
                 + KL     SL++  +   +           ++ S+ L +      L N+    
Sbjct: 408 ------VNKL--HKYSLVE--KQPKE--------STISIPSIYLELKV---KLENE---- 442

Query: 432 KSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEY-LDLSNN 490
            +LH   + H ++            +    DL    L+ +        SH+ + L    +
Sbjct: 443 YALHRSIVDHYNI----------PKTFDSDDLIPPYLDQYF------YSHIGHHLKNIEH 486

Query: 491 KLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQ-LETLQ 535
               +L  + F++     +        I   +  W      L TLQ
Sbjct: 487 PERMTLFRMVFLD---FRFLEQK----IRHDSTAWNASGSILNTLQ 525

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 40/219 (18%), Positives = 70/219 (31%), Gaps = 52/219 (23%)

Query: 347 SVGLENLTSIETLDLSGNSKLGGKIPTSFARL-----CKLTSVDLSLIDLS----QDFSQ 397
               E L+S+  L+L+G  ++     T  A +       L  V+L+   L     +    
Sbjct: 65  RFSAEVLSSLRQLNLAGV-RMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLP 123

Query: 398 VLDTFSSCGAYALESLDLSICQIS----GHLTNQLLQFKS-LHTLELGHNSL----FGPL 448
           V              L L +  +       L + LL  +  + TL L +N L       L
Sbjct: 124 VFLR--------ARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVL 175

Query: 449 PPALGELSSLKKLDLSNNMLN----GFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNL 504
              L   +S+  L L +  L       +   L +   L+ L+++ N              
Sbjct: 176 MEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN-------------- 221

Query: 505 TKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLGP 543
                 +A   +   + +P+      LE L L    L  
Sbjct: 222 -GAGDTAALALARAAREHPS------LELLHLYFNELSS 253

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 40.9 bits (96), Expect = 9e-04
 Identities = 47/290 (16%), Positives = 89/290 (30%), Gaps = 45/290 (15%)

Query: 206 LEHLDLSQMNLSKASDWLLV---TNSLPSLKVLKLTKCQLCH--FPPLLSANFSSLKALH 260
           L  L+L+ + ++     ++     +   +L  + L  CQL       LL       + L 
Sbjct: 74  LRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVF-LRARKLG 132

Query: 261 LAINNFDNS--------LFQYGSWVFGLRNLVFIDLSSNQFQGQ----IPIGLRNLTSLR 308
           L +N+            L            +  + LS+N         +  GL   TS+ 
Sbjct: 133 LQLNSLGPEACKDLRDLLLHDQC------QITTLRLSNNPLTAAGVAVLMEGLAGNTSVT 186

Query: 309 HLDLRFNYFNSTTPGWLS---KFND-LEFLSVAWNSLQGT----ISSVGLENLTSIETLD 360
           HL L            L+     N  L+ L+VA+N    T    ++        S+E L 
Sbjct: 187 HLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA-AREHPSLELLH 245

Query: 361 LSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQI 420
           L  N +L  +       L         ++    + +      S   +  L  +  ++   
Sbjct: 246 LYFN-ELSSEGRQVLRDLGGAAEGGARVVVSLTEGTA----VSEYWSVILSEVQRNLNSW 300

Query: 421 SGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGEL----SSLKKLDLSNN 466
                 + L+   L   +L  +      P    +L      ++ L     
Sbjct: 301 DRARVQRHLE---LLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLG 347

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 41.5 bits (97), Expect = 4e-04
 Identities = 32/133 (24%), Positives = 50/133 (37%), Gaps = 8/133 (6%)

Query: 392 SQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPA 451
            +   Q+    S     + ++LDL   + S            L+       +L       
Sbjct: 111 PEQVEQLKLIMSKRYDGSQQALDLKGLR-SDPDLVAQNIDVVLNRRSCMAATLRI----I 165

Query: 452 LGELSSLKKLDLSNNMLNGFIPLS--LGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTW 509
              +  L  L+LSNN L     +S  + K  +L+ L+LS N+L  S  E+  +   KL  
Sbjct: 166 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SERELDKIKGLKLEE 224

Query: 510 FSASGNSLILKFN 522
               GNSL   F 
Sbjct: 225 LWLDGNSLCDTFR 237

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 40.6 bits (95), Expect = 4e-04
 Identities = 20/116 (17%), Positives = 45/116 (38%), Gaps = 16/116 (13%)

Query: 128 LIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKF---AGMIPL-QLGNLS-NLQYLDL 182
           +  +D + +    I    ++  L+ +  + L    +     +  L QL NL  ++  +++
Sbjct: 63  IQAIDATDSCIMSIGF-DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEI 121

Query: 183 SGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDW----LLVTNSLPSLKV 234
                   ++    +  L     L++L LS  +L    +          SLPSL++
Sbjct: 122 IS----CGNVTDKGIIALHHFRNLKYLFLS--DLPGVKEKEKIVQAFKTSLPSLEL 171

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	552
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	100.0
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.98
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.94
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.88
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.88
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.88
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.87
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.87
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.87
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.86
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.86
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.85
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.84
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.83
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.82
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.81
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.8
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.79
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.79
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.77
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.76
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.76
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.74
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.74
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.73
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.72
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.72
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.72
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.72
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.71
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.71
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.7
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.69
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.69
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.67
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.66
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.66
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.64
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.63
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.63
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.62
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.59
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.57
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.56
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.54
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.51
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.49
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.45
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.45
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.43
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.43
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.42
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.4
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.39
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.37
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.37
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.35
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.34
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.23
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.21
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.15
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.11
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.11
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.08
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.94
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.79
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.78
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.71
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.52
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.46
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.35
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.24
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.15
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.14
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.38
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.87
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.33
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.93

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=3e-62  Score=535.30  Aligned_cols=504  Identities=26%  Similarity=0.312  Sum_probs=389.6

Q ss_pred             CCCCCCcHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCcccCceEecCCCCcEEEEEcCCCCccCC-----CCchhhccc
Q 047285           32 NSYVGCIDSEREALLKLKQDLIDPSNRLASWNTGDGDCCKWAGVFCSNITGHVLQLSLQNPFSYLG-----GDLREVKAG  106 (552)
Q Consensus        32 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~W~~~~~~~c~w~gv~c~~~~~~v~~L~l~~~~~~~~-----~~l~~l~~~  106 (552)
                      +++.++.++|++||++||+++.||. .+++|+. +.+||.|.||+|+  .|+|+.|++++......     ..+..+.. 
T Consensus         4 ~~~~~~~~~~~~all~~k~~~~~~~-~l~~W~~-~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~-   78 (768)
T 3rgz_A            4 ASPSQSLYREIHQLISFKDVLPDKN-LLPDWSS-NKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTG-   78 (768)
T ss_dssp             ----CCHHHHHHHHHHHHTTCSCTT-SSTTCCT-TSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTT-
T ss_pred             CccccCCHHHHHHHHHHHhhCCCcc-cccCCCC-CCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCc-
Confidence            3444557899999999999999888 8999985 6799999999998  79999999998654321     11111111 


Q ss_pred             CccccCccccc--cCccccCCCCCCEEeCCCCcCCCCccCc--ccCCCCCCCEEeCCCCcCCCCCcccc-CCCCCCCEEe
Q 047285          107 SNYERSKLGGK--VNPSLVDLKHLIHLDLSGNDFEGIQIPK--YLGSLENLRYLNLSGAKFAGMIPLQL-GNLSNLQYLD  181 (552)
Q Consensus       107 ~~~~~~~~~~~--~~~~l~~l~~L~~L~Ls~n~~~~~~~p~--~~~~l~~L~~L~L~~~~~~~~lp~~l-~~l~~L~~L~  181 (552)
                      ....++...+.  +|+.++++++|++|+|++|.+.+ .+|.  .++++++|++|++++|.+.+.+|..+ .++++|++|+
T Consensus        79 L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~  157 (768)
T 3rgz_A           79 LESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSG-PVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLD  157 (768)
T ss_dssp             CCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEE-EGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEE
T ss_pred             ccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCC-cCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEE
Confidence            11111222222  23566667777777777776665 3555  66666677777777666666666554 5666666666


Q ss_pred             ccCCCCCCCcccc----C----------------CccccCCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCC
Q 047285          182 LSGTFLSNYDLHV----D----------------SLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQ  241 (552)
Q Consensus       182 l~~n~l~~~~~~~----~----------------~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~  241 (552)
                      +++|.++......    .                ....+..+++|++|++++|.+.+.  ++. +.++++|++|++++|.
T Consensus       158 Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~-l~~l~~L~~L~Ls~n~  234 (768)
T 3rgz_A          158 LSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTG--IPF-LGDCSALQHLDISGNK  234 (768)
T ss_dssp             CCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSC--CCB-CTTCCSCCEEECCSSC
T ss_pred             CCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCC--Ccc-cccCCCCCEEECcCCc
Confidence            6666554321100    0                001135677788888888877662  333 6778888888888888


Q ss_pred             CCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCCccEEeccCccccccCchhhhcc-cCCcEEeccCCCCCCC
Q 047285          242 LCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNL-TSLRHLDLRFNYFNST  320 (552)
Q Consensus       242 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l-~~L~~L~l~~n~l~~~  320 (552)
                      +.+..|..+.++++|++|++++|.+.+.++.   .  .+++|++|++++|.+++.+|..+... ++|++|++++|.+++.
T Consensus       235 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~---~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~  309 (768)
T 3rgz_A          235 LSGDFSRAISTCTELKLLNISSNQFVGPIPP---L--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA  309 (768)
T ss_dssp             CCSCHHHHTTTCSSCCEEECCSSCCEESCCC---C--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEEC
T ss_pred             CCCcccHHHhcCCCCCEEECCCCcccCccCc---c--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCc
Confidence            8877777788888888888888888776665   2  67888888888888888888877664 8899999999999888


Q ss_pred             CCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCCCCCCCCCchhHhhcc-cCceeecccccCCCCCcc--
Q 047285          321 TPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLC-KLTSVDLSLIDLSQDFSQ--  397 (552)
Q Consensus       321 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~-~L~~l~l~~~~~~~~~~~--  397 (552)
                      +|..+.++++|++|++++|.++|.+|...+..+++|++|++++|. +++.+|..+..++ +|+.++++.+.......+  
T Consensus       310 ~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~  388 (768)
T 3rgz_A          310 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE-FSGELPESLTNLSASLLTLDLSSNNFSGPILPNL  388 (768)
T ss_dssp             CCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSE-EEECCCTTHHHHTTTCSEEECCSSEEEEECCTTT
T ss_pred             cchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCc-cCccccHHHHhhhcCCcEEEccCCCcCCCcChhh
Confidence            888899999999999999999888887768889999999999998 8888899888887 888888876543211000  


Q ss_pred             -------------------ccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCC
Q 047285          398 -------------------VLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSL  458 (552)
Q Consensus       398 -------------------~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  458 (552)
                                         ...+..+..+++|++|++++|.+++.+|..+..+++|+.|++++|++.+.+|..+..+++|
T Consensus       389 ~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L  468 (768)
T 3rgz_A          389 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL  468 (768)
T ss_dssp             TCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred             hhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCc
Confidence                               0122346678899999999999999999999999999999999999999999999999999


Q ss_pred             CEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcccccEEecCC
Q 047285          459 KKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRS  538 (552)
Q Consensus       459 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~  538 (552)
                      ++|++++|.+++.+|..+.++++|++|++++|++++.+|. .+..+++|++|++++|++.+.+|..+..+++|+.|++++
T Consensus       469 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~  547 (768)
T 3rgz_A          469 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK-WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT  547 (768)
T ss_dssp             CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCG-GGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCS
T ss_pred             eEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCCh-HHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCC
Confidence            9999999999999999999999999999999999999998 799999999999999999999999999999999999999


Q ss_pred             CCCCCCCCccccc
Q 047285          539 CHLGPHFPSWLHS  551 (552)
Q Consensus       539 n~~~~~iP~~l~~  551 (552)
                      |+++|.+|.++.+
T Consensus       548 N~l~g~ip~~~~~  560 (768)
T 3rgz_A          548 NLFNGTIPAAMFK  560 (768)
T ss_dssp             SEEESBCCGGGGT
T ss_pred             CccCCcCChHHhc
Confidence            9999999988754

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=8.3e-52  Score=442.62  Aligned_cols=439  Identities=19%  Similarity=0.241  Sum_probs=273.5

Q ss_pred             CCCcHHHHHHHHHhHhcCCCCC-C-------CCCCCCCCCCCCccc---CceEecCCCCcEEEEEcCCCCccCCCCchhh
Q 047285           35 VGCIDSEREALLKLKQDLIDPS-N-------RLASWNTGDGDCCKW---AGVFCSNITGHVLQLSLQNPFSYLGGDLREV  103 (552)
Q Consensus        35 ~~~~~~~~~~l~~~~~~~~~~~-~-------~~~~W~~~~~~~c~w---~gv~c~~~~~~v~~L~l~~~~~~~~~~l~~l  103 (552)
                      .+...+|++||.++++++.++. .       ...+|+. +.+||.|   .||+|+. .|||++|+|++            
T Consensus        25 ~~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~-~~~~c~w~~~~GV~C~~-~~~V~~L~L~~------------   90 (636)
T 4eco_A           25 TAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNF-NKELDMWGAQPGVSLNS-NGRVTGLSLEG------------   90 (636)
T ss_dssp             CCHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCC-SSCGGGTTCCTTEEECT-TCCEEEEECTT------------
T ss_pred             hhhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCC-CCCcccccCCCCeEEcC-CCCEEEEEecC------------
Confidence            3445679999999999986442 1       2348987 6899999   9999975 49999999998            


Q ss_pred             cccCccccCccccccCccccCCCCCCEEeCCCCcC------CC-------------------------------------
Q 047285          104 KAGSNYERSKLGGKVNPSLVDLKHLIHLDLSGNDF------EG-------------------------------------  140 (552)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~------~~-------------------------------------  140 (552)
                              +++.|.+|++++++++|++|+|++|.+      .+                                     
T Consensus        91 --------~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~  162 (636)
T 4eco_A           91 --------FGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLI  162 (636)
T ss_dssp             --------SCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHH
T ss_pred             --------cccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHH
Confidence                    488999999999999999999999954      10                                     


Q ss_pred             ---------------------------------CccCcccCCCCCCCEEeCCCCcCCCC-----------------Cccc
Q 047285          141 ---------------------------------IQIPKYLGSLENLRYLNLSGAKFAGM-----------------IPLQ  170 (552)
Q Consensus       141 ---------------------------------~~~p~~~~~l~~L~~L~L~~~~~~~~-----------------lp~~  170 (552)
                                                       ..+|+.++++++|++|+|++|++++.                 +|..
T Consensus       163 ~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~  242 (636)
T 4eco_A          163 KDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED  242 (636)
T ss_dssp             HHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC
T ss_pred             HHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchh
Confidence                                             01566677777777777777777764                 7777


Q ss_pred             cC--CCCCCCEEeccCCCCCC-CccccCCccccCCCCCCCEEeCCCCc-CCCCcchhhhcCCC------CCCCEEEcCCC
Q 047285          171 LG--NLSNLQYLDLSGTFLSN-YDLHVDSLSWLSGLYMLEHLDLSQMN-LSKASDWLLVTNSL------PSLKVLKLTKC  240 (552)
Q Consensus       171 l~--~l~~L~~L~l~~n~l~~-~~~~~~~~~~l~~l~~L~~L~ls~n~-~~~~~~~~~~~~~~------~~L~~L~l~~n  240 (552)
                      ++  ++++|++|++++|.+.. +|      +.+.++++|++|++++|. +++. .+|..+..+      ++|++|++++|
T Consensus       243 l~~~~l~~L~~L~L~~n~l~~~~p------~~l~~l~~L~~L~Ls~n~~l~~~-~lp~~~~~L~~~~~l~~L~~L~L~~n  315 (636)
T 4eco_A          243 LKWDNLKDLTDVEVYNCPNLTKLP------TFLKALPEMQLINVACNRGISGE-QLKDDWQALADAPVGEKIQIIYIGYN  315 (636)
T ss_dssp             CCGGGCTTCCEEEEECCTTCSSCC------TTTTTCSSCCEEECTTCTTSCHH-HHHHHHHHHHHSGGGGTCCEEECCSS
T ss_pred             hhhcccCCCCEEEecCCcCCccCh------HHHhcCCCCCEEECcCCCCCccc-cchHHHHhhhccccCCCCCEEECCCC
Confidence            77  77777777777775432 22      136677777777777776 5530 134434333      77777777777


Q ss_pred             CCCCCCCC--cccCCCCCceeecCCCCCCCCCccccccccCCCCccEEeccCccccccCchhhhcccC-CcEEeccCCCC
Q 047285          241 QLCHFPPL--LSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTS-LRHLDLRFNYF  317 (552)
Q Consensus       241 ~~~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~-L~~L~l~~n~l  317 (552)
                      .++ .+|.  .+.++++|+.|++++|.+.|.+|    .+..+++|++|++++|.++ .+|..+..+++ |++|++++|.+
T Consensus       316 ~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip----~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l  389 (636)
T 4eco_A          316 NLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP----AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKL  389 (636)
T ss_dssp             CCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC----CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCC
T ss_pred             cCC-ccCchhhhccCCCCCEEeCcCCcCccchh----hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcC
Confidence            777 4555  67777777777777777776655    3455677777777777776 66666777777 77777777777


Q ss_pred             CCCCCccCCCCC--CCCEEEccCccceeecCccccC-------CCCccCEEeCCCCCCCCCCCchh-HhhcccCceeecc
Q 047285          318 NSTTPGWLSKFN--DLEFLSVAWNSLQGTISSVGLE-------NLTSIETLDLSGNSKLGGKIPTS-FARLCKLTSVDLS  387 (552)
Q Consensus       318 ~~~~~~~l~~l~--~L~~L~l~~n~l~~~~~~~~l~-------~l~~L~~L~l~~n~~l~~~~~~~-~~~l~~L~~l~l~  387 (552)
                      + .+|..+...+  +|++|++++|.+++.+|.. +.       .+++|+.|++++|. ++ .+|.. +..+++|+.++++
T Consensus       390 ~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~~~~~~~~~~~L~~L~Ls~N~-l~-~lp~~~~~~l~~L~~L~Ls  465 (636)
T 4eco_A          390 K-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN-FDPLDPTPFKGINVSSINLSNNQ-IS-KFPKELFSTGSPLSSINLM  465 (636)
T ss_dssp             S-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCS-SCTTCSSCCCCCCEEEEECCSSC-CC-SCCTHHHHTTCCCSEEECC
T ss_pred             c-ccchhhhhcccCccCEEECcCCcCCCcchhh-hcccccccccCCCCCEEECcCCc-cC-cCCHHHHccCCCCCEEECC
Confidence            6 5566555543  6777777777777666554 55       56677777777776 55 34433 3446655555544


Q ss_pred             cccCCCCCccccccc---cccCCCCCCEEEccCCcCcccCchhhc--CCCCCcEEECCCCcccCCCcccccCCCCCCEEe
Q 047285          388 LIDLSQDFSQVLDTF---SSCGAYALESLDLSICQISGHLTNQLL--QFKSLHTLELGHNSLFGPLPPALGELSSLKKLD  462 (552)
Q Consensus       388 ~~~~~~~~~~~~~~~---~~~~~~~L~~L~ls~n~~~~~~~~~l~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  462 (552)
                      .+.... ........   ...++++|++|++++|.++ .+|..+.  .+++|+.|++++|++++ +|..+..+++|++|+
T Consensus       466 ~N~l~~-i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~  542 (636)
T 4eco_A          466 GNMLTE-IPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFG  542 (636)
T ss_dssp             SSCCSB-CCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEE
T ss_pred             CCCCCC-cCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEE
Confidence            433321 00000000   0111224555555555555 3444443  45555555555555553 455555555555555


Q ss_pred             C------CCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeE
Q 047285          463 L------SNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLIL  519 (552)
Q Consensus       463 L------~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~  519 (552)
                      +      ++|.+.+.+|..+..+++|++|++++|++ +.+|. .+.  ++|++|++++|++..
T Consensus       543 Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~-~~~--~~L~~L~Ls~N~l~~  601 (636)
T 4eco_A          543 IRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNE-KIT--PNISVLDIKDNPNIS  601 (636)
T ss_dssp             CCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCS-CCC--TTCCEEECCSCTTCE
T ss_pred             CCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCH-hHh--CcCCEEECcCCCCcc
Confidence            5      23444445555555555555555555555 44444 222  455555555555443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.2e-50  Score=440.49  Aligned_cols=457  Identities=18%  Similarity=0.205  Sum_probs=301.4

Q ss_pred             CCCCCcHHHHHHHHHhHhcCCCCCCCCCCCCCCC----CCC--ccc------------CceEecCCCCcEEEEEcCCCCc
Q 047285           33 SYVGCIDSEREALLKLKQDLIDPSNRLASWNTGD----GDC--CKW------------AGVFCSNITGHVLQLSLQNPFS   94 (552)
Q Consensus        33 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~W~~~~----~~~--c~w------------~gv~c~~~~~~v~~L~l~~~~~   94 (552)
                      .+.++..+|++||++||+++.+|     +|+..+    .+|  |.|            .||+|+. .+||+.|+|++   
T Consensus       262 ~~~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~---  332 (876)
T 4ecn_A          262 KETAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAG---  332 (876)
T ss_dssp             CCCCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTT---
T ss_pred             cccccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECcc---
Confidence            44556788999999999999765     675432    345  999            9999986 79999999998   


Q ss_pred             cCCCCchhhcccCccccCccccccCccccCCCCCCEEeC-CCCcCCCC--------------------------------
Q 047285           95 YLGGDLREVKAGSNYERSKLGGKVNPSLVDLKHLIHLDL-SGNDFEGI--------------------------------  141 (552)
Q Consensus        95 ~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L-s~n~~~~~--------------------------------  141 (552)
                                       +++.|.+|++++++++|++|+| ++|.+.|.                                
T Consensus       333 -----------------~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~  395 (876)
T 4ecn_A          333 -----------------FGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYD  395 (876)
T ss_dssp             -----------------TCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCC
T ss_pred             -----------------CCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccC
Confidence                             4899999999999999999999 77754321                                


Q ss_pred             -------------------------------------------ccCcccCCCCCCCEEeCCCCcCCC-------------
Q 047285          142 -------------------------------------------QIPKYLGSLENLRYLNLSGAKFAG-------------  165 (552)
Q Consensus       142 -------------------------------------------~~p~~~~~l~~L~~L~L~~~~~~~-------------  165 (552)
                                                                 .+|..++++++|++|+|++|++++             
T Consensus       396 ~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n  475 (876)
T 4ecn_A          396 QRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSD  475 (876)
T ss_dssp             GGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSH
T ss_pred             cchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccc
Confidence                                                       066777788888888888888876             


Q ss_pred             ----CCccccC--CCCCCCEEeccCCCCC-CCccccCCccccCCCCCCCEEeCCCCc-CCCCcchhh-------hcCCCC
Q 047285          166 ----MIPLQLG--NLSNLQYLDLSGTFLS-NYDLHVDSLSWLSGLYMLEHLDLSQMN-LSKASDWLL-------VTNSLP  230 (552)
Q Consensus       166 ----~lp~~l~--~l~~L~~L~l~~n~l~-~~~~~~~~~~~l~~l~~L~~L~ls~n~-~~~~~~~~~-------~~~~~~  230 (552)
                          .+|..++  ++++|++|++++|.+. .+|      +.+.++++|++|++++|. +++. .+|.       .+..++
T Consensus       476 ~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP------~~l~~L~~L~~L~Ls~N~~lsg~-~iP~~i~~L~~~~~~l~  548 (876)
T 4ecn_A          476 YAKQYENEELSWSNLKDLTDVELYNCPNMTQLP------DFLYDLPELQSLNIACNRGISAA-QLKADWTRLADDEDTGP  548 (876)
T ss_dssp             HHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCC------GGGGGCSSCCEEECTTCTTSCHH-HHHHHHHHHHHCTTTTT
T ss_pred             cccccCChhhhhccCCCCCEEECcCCCCCccCh------HHHhCCCCCCEEECcCCCCcccc-cchHHHHhhhhcccccC
Confidence                3777777  8888888888877643 223      236778888888888886 6540 1222       234556


Q ss_pred             CCCEEEcCCCCCCCCCCC--cccCCCCCceeecCCCCCCCCCccccccccCCCCccEEeccCccccccCchhhhcccC-C
Q 047285          231 SLKVLKLTKCQLCHFPPL--LSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTS-L  307 (552)
Q Consensus       231 ~L~~L~l~~n~~~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~-L  307 (552)
                      +|++|++++|.+. .+|.  .+.++++|+.|++++|.+. .+|    .+..+++|++|++++|.+. .+|..+..+++ |
T Consensus       549 ~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp----~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L  621 (876)
T 4ecn_A          549 KIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE----AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQV  621 (876)
T ss_dssp             TCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC----CCCTTSEESEEECCSSCCS-CCCTTSCEECTTC
T ss_pred             CccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch----hhcCCCcceEEECcCCccc-cchHHHhhccccC
Confidence            8888888888887 5555  7778888888888888777 444    4667788888888888877 67777777877 8


Q ss_pred             cEEeccCCCCCCCCCccCCCCCC--CCEEEccCccceeecCccc--cC--CCCccCEEeCCCCCCCCCCCchhH-hhccc
Q 047285          308 RHLDLRFNYFNSTTPGWLSKFND--LEFLSVAWNSLQGTISSVG--LE--NLTSIETLDLSGNSKLGGKIPTSF-ARLCK  380 (552)
Q Consensus       308 ~~L~l~~n~l~~~~~~~l~~l~~--L~~L~l~~n~l~~~~~~~~--l~--~l~~L~~L~l~~n~~l~~~~~~~~-~~l~~  380 (552)
                      ++|++++|.++ .+|..+...+.  |+.|++++|.+.+.+|...  +.  .+++|+.|++++|. ++ .+|..+ ..+++
T Consensus       622 ~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~-L~-~lp~~~~~~l~~  698 (876)
T 4ecn_A          622 EGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE-IQ-KFPTELFATGSP  698 (876)
T ss_dssp             CEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC-CC-SCCHHHHHTTCC
T ss_pred             CEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCc-CC-ccCHHHHccCCC
Confidence            88888888877 56666665543  8888888888876554321  12  33478888888887 66 455544 35666


Q ss_pred             CceeecccccCCCCCccccccc---cccCCCCCCEEEccCCcCcccCchhhc--CCCCCcEEECCCCcccCCCcccccCC
Q 047285          381 LTSVDLSLIDLSQDFSQVLDTF---SSCGAYALESLDLSICQISGHLTNQLL--QFKSLHTLELGHNSLFGPLPPALGEL  455 (552)
Q Consensus       381 L~~l~l~~~~~~~~~~~~~~~~---~~~~~~~L~~L~ls~n~~~~~~~~~l~--~l~~L~~L~L~~n~l~~~~~~~l~~l  455 (552)
                      |+.++++.+.... ........   ...++++|++|++++|+++ .+|..+.  .+++|+.|+|++|++++ +|..+..+
T Consensus       699 L~~L~Ls~N~L~~-ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L  775 (876)
T 4ecn_A          699 ISTIILSNNLMTS-IPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNS  775 (876)
T ss_dssp             CSEEECCSCCCSC-CCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGC
T ss_pred             CCEEECCCCcCCc-cChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcC
Confidence            6666555443331 00000000   0112235666666666666 4555554  56666666666666664 55566666


Q ss_pred             CCCCEEeCCC------CcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcc
Q 047285          456 SSLKKLDLSN------NMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPF  529 (552)
Q Consensus       456 ~~L~~L~L~~------n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~  529 (552)
                      ++|+.|++++      |.+.+.+|..+.++++|+.|+|++|++ +.+|. .+.  ++|+.|+|++|++...-+..+....
T Consensus       776 ~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~-~l~--~~L~~LdLs~N~l~~i~~~~~~~~~  851 (876)
T 4ecn_A          776 SQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDE-KLT--PQLYILDIADNPNISIDVTSVCPYI  851 (876)
T ss_dssp             TTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCS-CCC--SSSCEEECCSCTTCEEECGGGHHHH
T ss_pred             CCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCH-hhc--CCCCEEECCCCCCCccChHHccccc
Confidence            6666666654      555555666666666666666666666 55555 222  4666666666665544444443333


Q ss_pred             cccEEecCCC
Q 047285          530 QLETLQLRSC  539 (552)
Q Consensus       530 ~L~~L~l~~n  539 (552)
                      .+..+.+.+|
T Consensus       852 ~~~~~~L~~n  861 (876)
T 4ecn_A          852 EAGMYVLLYD  861 (876)
T ss_dssp             HTTCCEEECC
T ss_pred             cchheeecCC
Confidence            3333444433

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=2.3e-51  Score=449.13  Aligned_cols=445  Identities=30%  Similarity=0.390  Sum_probs=363.4

Q ss_pred             CcEEEEEcCCCCccCC----CCchhhcccCccccCccccccCccccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEe
Q 047285           82 GHVLQLSLQNPFSYLG----GDLREVKAGSNYERSKLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLN  157 (552)
Q Consensus        82 ~~v~~L~l~~~~~~~~----~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~  157 (552)
                      .+++.|++++......    +.++.++.+ +...+.+.+.+|..+.++++|++|++++|.+.+ .+|..  .+++|++|+
T Consensus       200 ~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L-~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~--~l~~L~~L~  275 (768)
T 3rgz_A          200 VNLEFLDVSSNNFSTGIPFLGDCSALQHL-DISGNKLSGDFSRAISTCTELKLLNISSNQFVG-PIPPL--PLKSLQYLS  275 (768)
T ss_dssp             TTCCEEECCSSCCCSCCCBCTTCCSCCEE-ECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEE-SCCCC--CCTTCCEEE
T ss_pred             CcCCEEECcCCcCCCCCcccccCCCCCEE-ECcCCcCCCcccHHHhcCCCCCEEECCCCcccC-ccCcc--ccCCCCEEE
Confidence            4677888877543221    111222211 233456666666677777777777777777665 24443  667777777


Q ss_pred             CCCCcCCCCCccccCCC-CCCCEEeccCCCCCCCccccCCccccCCCCCCCEEeCCCCcCCCCcchhhh-cCCCCCCCEE
Q 047285          158 LSGAKFAGMIPLQLGNL-SNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLV-TNSLPSLKVL  235 (552)
Q Consensus       158 L~~~~~~~~lp~~l~~l-~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~-~~~~~~L~~L  235 (552)
                      +++|++++.+|..+.+. ++|++|++++|.++...     .+.+..+++|++|++++|.+.+  .++.. +..+++|++|
T Consensus       276 L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~-----p~~~~~l~~L~~L~L~~n~l~~--~ip~~~l~~l~~L~~L  348 (768)
T 3rgz_A          276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV-----PPFFGSCSLLESLALSSNNFSG--ELPMDTLLKMRGLKVL  348 (768)
T ss_dssp             CCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECC-----CGGGGGCTTCCEEECCSSEEEE--ECCHHHHTTCTTCCEE
T ss_pred             CcCCccCCccCHHHHhhcCcCCEEECcCCcCCCcc-----chHHhcCCCccEEECCCCcccC--cCCHHHHhcCCCCCEE
Confidence            77777777777777664 77777777777654211     1237788888999999888874  34443 7788899999


Q ss_pred             EcCCCCCCCCCCCcccCCC-CCceeecCCCCCCCCCccccccccC--CCCccEEeccCccccccCchhhhcccCCcEEec
Q 047285          236 KLTKCQLCHFPPLLSANFS-SLKALHLAINNFDNSLFQYGSWVFG--LRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDL  312 (552)
Q Consensus       236 ~l~~n~~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~~~--l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l  312 (552)
                      ++++|.+.+..|..+.+++ +|+.|++++|.+.+.++.   .+..  +++|++|++++|.+++.+|..+..+++|++|++
T Consensus       349 ~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~---~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  425 (768)
T 3rgz_A          349 DLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP---NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHL  425 (768)
T ss_dssp             ECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCT---TTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEEC
T ss_pred             eCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcCh---hhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEEC
Confidence            9999988888888888887 899999999988887776   5554  788999999999999999999999999999999


Q ss_pred             cCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCCCCCCCCCchhHhhcccCceeecccccCC
Q 047285          313 RFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLS  392 (552)
Q Consensus       313 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~  392 (552)
                      ++|.+++..|..+..+++|++|++++|.+.+.+|.. +..+++|++|++++|. +++.+|..+..+++|+.++++.+...
T Consensus       426 s~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~L~~L~L~~N~l~  503 (768)
T 3rgz_A          426 SFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE-LMYVKTLETLILDFND-LTGEIPSGLSNCTNLNWISLSNNRLT  503 (768)
T ss_dssp             CSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSC-CCSCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             cCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHH-HcCCCCceEEEecCCc-ccCcCCHHHhcCCCCCEEEccCCccC
Confidence            999999999999999999999999999999888887 8899999999999998 89999999999999999888876655


Q ss_pred             CCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccc--------------------
Q 047285          393 QDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPAL--------------------  452 (552)
Q Consensus       393 ~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l--------------------  452 (552)
                      ....     ..+..+++|++|++++|.+++.+|..+..+++|+.|++++|+++|.+|..+                    
T Consensus       504 ~~~p-----~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~  578 (768)
T 3rgz_A          504 GEIP-----KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYI  578 (768)
T ss_dssp             SCCC-----GGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEE
T ss_pred             CcCC-----hHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccc
Confidence            3222     234567899999999999999999999999999999999999988777644                    


Q ss_pred             --------------------------------------------------cCCCCCCEEeCCCCcCCccCcccccCCCCC
Q 047285          453 --------------------------------------------------GELSSLKKLDLSNNMLNGFIPLSLGKLSHL  482 (552)
Q Consensus       453 --------------------------------------------------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  482 (552)
                                                                        ..+++|+.|++++|+++|.+|..++++++|
T Consensus       579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L  658 (768)
T 3rgz_A          579 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYL  658 (768)
T ss_dssp             ECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTC
T ss_pred             ccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccC
Confidence                                                              335789999999999999999999999999


Q ss_pred             CeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcccccEEecCCCCCCCCCCcc
Q 047285          483 EYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLGPHFPSW  548 (552)
Q Consensus       483 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~iP~~  548 (552)
                      +.|+|++|+++|.+|. .++++++|++|+|++|+++|.+|..+..+.+|+.||+++|+++|.||+.
T Consensus       659 ~~L~Ls~N~l~g~ip~-~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~  723 (768)
T 3rgz_A          659 FILNLGHNDISGSIPD-EVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM  723 (768)
T ss_dssp             CEEECCSSCCCSCCCG-GGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred             CEEeCcCCccCCCCCh-HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence            9999999999999999 8999999999999999999999999999999999999999999999964

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=5.9e-47  Score=405.12  Aligned_cols=432  Identities=20%  Similarity=0.150  Sum_probs=200.8

Q ss_pred             CcEEEEEcCCCCccCCCCchhhcccCccccCccccccCccccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCC
Q 047285           82 GHVLQLSLQNPFSYLGGDLREVKAGSNYERSKLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGA  161 (552)
Q Consensus        82 ~~v~~L~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~  161 (552)
                      ..++.|++++.                    .+++..|..|.++++|++|++++|.+.+. .|+.|+++++|++|++++|
T Consensus        33 ~~l~~L~Ls~n--------------------~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n   91 (606)
T 3t6q_A           33 NSTECLEFSFN--------------------VLPTIQNTTFSRLINLTFLDLTRCQIYWI-HEDTFQSQHRLDTLVLTAN   91 (606)
T ss_dssp             TTCCEEECTTC--------------------CCSEECTTTSTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTC
T ss_pred             CcCcEEEccCC--------------------ccCcCChhHhccCccceEEECCCCcccee-ChhhccCccccCeeeCCCC
Confidence            46777888774                    55555555666666666666666666642 4566666666666666666


Q ss_pred             cCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCC
Q 047285          162 KFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQ  241 (552)
Q Consensus       162 ~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~  241 (552)
                      ++++..|..++++++|++|++++|.++.++...     +..+++|++|++++|.+.+.. .+. +..+++|++|++++|.
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~-----~~~l~~L~~L~L~~n~l~~~~-~~~-~~~l~~L~~L~L~~n~  164 (606)
T 3t6q_A           92 PLIFMAETALSGPKALKHLFFIQTGISSIDFIP-----LHNQKTLESLYLGSNHISSIK-LPK-GFPTEKLKVLDFQNNA  164 (606)
T ss_dssp             CCSEECTTTTSSCTTCCEEECTTSCCSCGGGSC-----CTTCTTCCEEECCSSCCCCCC-CCT-TCCCTTCCEEECCSSC
T ss_pred             cccccChhhhcccccccEeeccccCcccCCcch-----hccCCcccEEECCCCcccccC-ccc-ccCCcccCEEEcccCc
Confidence            666555666666666666666666655542211     455566666666666555421 111 1225556666666555


Q ss_pred             CCCCCCCcccCCCCCc--eeecCCCCCCCCCcccccc-------------------------------------------
Q 047285          242 LCHFPPLLSANFSSLK--ALHLAINNFDNSLFQYGSW-------------------------------------------  276 (552)
Q Consensus       242 ~~~~~~~~~~~l~~L~--~L~l~~n~~~~~~~~~~~~-------------------------------------------  276 (552)
                      +.+..+..+..+++|+  .|++++|.+.+..+.....                                           
T Consensus       165 l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~  244 (606)
T 3t6q_A          165 IHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDIS  244 (606)
T ss_dssp             CCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCC
T ss_pred             ccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccC
Confidence            5555555555555555  4555555544433321100                                           


Q ss_pred             ---ccCC--CCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccC
Q 047285          277 ---VFGL--RNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLE  351 (552)
Q Consensus       277 ---~~~l--~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~  351 (552)
                         +..+  .+|+.|++++|.+++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..+.. +.
T Consensus       245 ~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~-~~  322 (606)
T 3t6q_A          245 PAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQIS-AS  322 (606)
T ss_dssp             GGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGC-GG
T ss_pred             hhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhh-hh
Confidence               0000  03444444444444444444444555555555555444 33444444455555555555444322222 44


Q ss_pred             CCCccCEEeCCCCCCCCCCCch-hHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcC
Q 047285          352 NLTSIETLDLSGNSKLGGKIPT-SFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQ  430 (552)
Q Consensus       352 ~l~~L~~L~l~~n~~l~~~~~~-~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~  430 (552)
                      .+++|+.|++++|. +.+.++. .+..+++|+.++++........   ..+..+..+++|++|++++|.+++..+..+..
T Consensus       323 ~l~~L~~L~l~~n~-~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  398 (606)
T 3t6q_A          323 NFPSLTHLSIKGNT-KRLELGTGCLENLENLRELDLSHDDIETSD---CCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKE  398 (606)
T ss_dssp             GCTTCSEEECCSCS-SCCBCCSSTTTTCTTCCEEECCSSCCCEEE---ESTTTTTTCTTCCEEECCSCSCEEECTTTTTT
T ss_pred             ccCcCCEEECCCCC-cccccchhhhhccCcCCEEECCCCcccccc---CcchhcccCCCCCEEECCCCcCCcCCHHHhcC
Confidence            44455555555544 3333322 2444444444444433221100   00111223334444444444444444444444


Q ss_pred             CCCCcEEECCCCcccCCCcc-cccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCccccee-cCH-HhhhcCCCC
Q 047285          431 FKSLHTLELGHNSLFGPLPP-ALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNAS-LSE-IHFVNLTKL  507 (552)
Q Consensus       431 l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~-~~~~~l~~L  507 (552)
                      +++|+.|++++|++.+..+. .+..+++|++|++++|.+++..|..+..+++|++|++++|++++. ++. ..+..+++|
T Consensus       399 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L  478 (606)
T 3t6q_A          399 CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRL  478 (606)
T ss_dssp             CTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTC
T ss_pred             CccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCc
Confidence            44444444444444433222 134444444444444444433344444444444444444444331 110 123344444


Q ss_pred             CEEEccCCeeeEEcCCCCcCcccccEEecCCCCCCCCCCc
Q 047285          508 TWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLGPHFPS  547 (552)
Q Consensus       508 ~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~iP~  547 (552)
                      ++|++++|++.+..|..+..+++|+.|++++|++++..|+
T Consensus       479 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  518 (606)
T 3t6q_A          479 EILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIE  518 (606)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGG
T ss_pred             cEEECCCCccCccChhhhccccCCCEEECCCCccCcCChh
Confidence            4444444444444444444444444444444444443333

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.5e-45  Score=394.13  Aligned_cols=423  Identities=19%  Similarity=0.166  Sum_probs=253.8

Q ss_pred             CcEEEEEcCCCCccCCCCchhhcccCccccCccccccCccccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCC
Q 047285           82 GHVLQLSLQNPFSYLGGDLREVKAGSNYERSKLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGA  161 (552)
Q Consensus        82 ~~v~~L~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~  161 (552)
                      .+++.|++++                    +.+.+..+..|.++++|++|++++|.+++. .|..|+++++|++|++++|
T Consensus        32 ~~l~~L~Ls~--------------------n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i-~~~~~~~l~~L~~L~Ls~n   90 (606)
T 3vq2_A           32 SSTKNIDLSF--------------------NPLKILKSYSFSNFSELQWLDLSRCEIETI-EDKAWHGLHHLSNLILTGN   90 (606)
T ss_dssp             TTCCEEECTT--------------------SCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTC
T ss_pred             CCcCEEECCC--------------------CCcCEeChhhccCCccCcEEeCCCCccccc-CHHHhhchhhcCEeECCCC
Confidence            4678888877                    466666666778888888888888877753 4667778888888888888


Q ss_pred             cCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCC
Q 047285          162 KFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQ  241 (552)
Q Consensus       162 ~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~  241 (552)
                      ++++..|..++++++|++|++++|.+..++...     +.++++|++|++++|.+.+. .++..+.++++|++|++++|.
T Consensus        91 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~-----~~~l~~L~~L~L~~n~l~~~-~lp~~~~~l~~L~~L~Ls~n~  164 (606)
T 3vq2_A           91 PIQSFSPGSFSGLTSLENLVAVETKLASLESFP-----IGQLITLKKLNVAHNFIHSC-KLPAYFSNLTNLVHVDLSYNY  164 (606)
T ss_dssp             CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSC-----CTTCTTCCEEECCSSCCCCC-CCCGGGGTCTTCCEEECCSSC
T ss_pred             cccccChhhcCCcccCCEEEccCCccccccccc-----cCCCCCCCEEeCCCCcccce-echHhHhhcCCCCEEEccCCc
Confidence            887766777888888888888888776655322     67777888888888877653 245667777888888888887


Q ss_pred             CCCCCCCcccCCCCCc----eeecCCCCCCCCCcccc-------------------------------------------
Q 047285          242 LCHFPPLLSANFSSLK----ALHLAINNFDNSLFQYG-------------------------------------------  274 (552)
Q Consensus       242 ~~~~~~~~~~~l~~L~----~L~l~~n~~~~~~~~~~-------------------------------------------  274 (552)
                      +.+..+..+..+++|+    .|++++|.+++..+...                                           
T Consensus       165 l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~  244 (606)
T 3vq2_A          165 IQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDE  244 (606)
T ss_dssp             CCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTS
T ss_pred             ceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccC
Confidence            7777666665555443    45555555443222200                                           


Q ss_pred             ----------------------------------ccccCCCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCC
Q 047285          275 ----------------------------------SWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNST  320 (552)
Q Consensus       275 ----------------------------------~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~  320 (552)
                                                        ..+..+++|+.|++++|.+. .+| .+..+++|++|++++|.+ +.
T Consensus       245 ~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~  321 (606)
T 3vq2_A          245 RNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQ  321 (606)
T ss_dssp             CCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SS
T ss_pred             CcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccC-cc
Confidence                                              01223445555555555553 233 455566677777777776 45


Q ss_pred             CCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCCCCCCCC--CchhHhhcccCceeecccccCCCCCccc
Q 047285          321 TPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGK--IPTSFARLCKLTSVDLSLIDLSQDFSQV  398 (552)
Q Consensus       321 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~--~~~~~~~l~~L~~l~l~~~~~~~~~~~~  398 (552)
                      +|. + .+++|++|++++|...+.+   .+..+++|+.|++++|. +++.  ++..+..+++|+.++++.+......   
T Consensus       322 lp~-~-~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~---  392 (606)
T 3vq2_A          322 FPT-L-DLPFLKSLTLTMNKGSISF---KKVALPSLSYLDLSRNA-LSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS---  392 (606)
T ss_dssp             CCC-C-CCSSCCEEEEESCSSCEEC---CCCCCTTCCEEECCSSC-EEEEEECCHHHHCCSCCCEEECCSCSEEEEC---
T ss_pred             ccc-C-CCCccceeeccCCcCccch---hhccCCCCCEEECcCCc-cCCCcchhhhhccCCcccEeECCCCccccch---
Confidence            553 3 6667777777766544333   25567777777777776 5544  3677777777777777654422200   


Q ss_pred             cccccccCCCCCCEEEccCCcCcccCc-hhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCc-cCcccc
Q 047285          399 LDTFSSCGAYALESLDLSICQISGHLT-NQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNG-FIPLSL  476 (552)
Q Consensus       399 ~~~~~~~~~~~L~~L~ls~n~~~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~  476 (552)
                         ..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|++++..|..+..+++|++|++++|.+++ .+|..+
T Consensus       393 ---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  469 (606)
T 3vq2_A          393 ---ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVF  469 (606)
T ss_dssp             ---CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCC
T ss_pred             ---hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhh
Confidence               123334455555555555554444 344555555555555555555455555555555555555555544 244445


Q ss_pred             cCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcccccEEecCCCCCCCCCCcc
Q 047285          477 GKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLGPHFPSW  548 (552)
Q Consensus       477 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~iP~~  548 (552)
                      ..+++|++|++++|++++..|. .+.++++|++|++++|++.+..|..+..+++|+.|++++|+++ .+|..
T Consensus       470 ~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~  539 (606)
T 3vq2_A          470 ANTTNLTFLDLSKCQLEQISWG-VFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGI  539 (606)
T ss_dssp             TTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESC
T ss_pred             ccCCCCCEEECCCCcCCccChh-hhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHh
Confidence            5555555555555555444444 4455555555555555555554555555555555555555555 44443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=8.7e-45  Score=388.29  Aligned_cols=415  Identities=21%  Similarity=0.179  Sum_probs=257.3

Q ss_pred             CccccccCccccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCc
Q 047285          112 SKLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYD  191 (552)
Q Consensus       112 ~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~  191 (552)
                      +.+.+..|..|.++++|++|++++|.+.+ ..|..|+.+++|++|++++|++++..|..++++++|++|++++|.+..++
T Consensus        67 n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~  145 (606)
T 3t6q_A           67 CQIYWIHEDTFQSQHRLDTLVLTANPLIF-MAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIK  145 (606)
T ss_dssp             CCCCEECTTTTTTCTTCCEEECTTCCCSE-ECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCC
T ss_pred             CccceeChhhccCccccCeeeCCCCcccc-cChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccC
Confidence            35666666677777777777777777765 25667777777777777777777555666777777777777777666543


Q ss_pred             cccCCccccCCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCC--------------------------------------
Q 047285          192 LHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLK--------------------------------------  233 (552)
Q Consensus       192 ~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~--------------------------------------  233 (552)
                      .     +.+..+++|++|++++|.+...  .+..+..+++|+                                      
T Consensus       146 ~-----~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~  218 (606)
T 3t6q_A          146 L-----PKGFPTEKLKVLDFQNNAIHYL--SKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVI  218 (606)
T ss_dssp             C-----CTTCCCTTCCEEECCSSCCCEE--CHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHH
T ss_pred             c-----ccccCCcccCEEEcccCccccc--ChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHH
Confidence            2     1133456666666666655542  223333444444                                      


Q ss_pred             ---------------------------------------EEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCcccc
Q 047285          234 ---------------------------------------VLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYG  274 (552)
Q Consensus       234 ---------------------------------------~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~  274 (552)
                                                             +|++++|.+.+.++..+..+++|++|++++|.++ .+|.  
T Consensus       219 ~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~--  295 (606)
T 3t6q_A          219 FKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPS--  295 (606)
T ss_dssp             HHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCS--
T ss_pred             hhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCCh--
Confidence                                                   4444445555555555556666666666666655 3333  


Q ss_pred             ccccCCCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCc-cCCCCCCCCEEEccCccceeec--CccccC
Q 047285          275 SWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPG-WLSKFNDLEFLSVAWNSLQGTI--SSVGLE  351 (552)
Q Consensus       275 ~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~l~~~~--~~~~l~  351 (552)
                       .+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.++. .+..+++|++|++++|.+++..  +.. +.
T Consensus       296 -~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~  373 (606)
T 3t6q_A          296 -GLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQ-LR  373 (606)
T ss_dssp             -SCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTT-TT
T ss_pred             -hhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchh-cc
Confidence             455566666666666666655555666666666666666666544433 3566666666666666665433  333 56


Q ss_pred             CCCccCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCC
Q 047285          352 NLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQF  431 (552)
Q Consensus       352 ~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l  431 (552)
                      .+++|++|++++|. +.+..|..+..+++|+.++++.........    ...+..+++|++|++++|.+++..+..+..+
T Consensus       374 ~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  448 (606)
T 3t6q_A          374 NLSHLQSLNLSYNE-PLSLKTEAFKECPQLELLDLAFTRLKVKDA----QSPFQNLHLLKVLNLSHSLLDISSEQLFDGL  448 (606)
T ss_dssp             TCTTCCEEECCSCS-CEEECTTTTTTCTTCSEEECTTCCEECCTT----CCTTTTCTTCCEEECTTCCCBTTCTTTTTTC
T ss_pred             cCCCCCEEECCCCc-CCcCCHHHhcCCccCCeEECCCCcCCCccc----chhhhCcccCCEEECCCCccCCcCHHHHhCC
Confidence            66666666666665 555556666666666666665444332111    1123445667777777777766666666677


Q ss_pred             CCCcEEECCCCcccC---CCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCC
Q 047285          432 KSLHTLELGHNSLFG---PLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLT  508 (552)
Q Consensus       432 ~~L~~L~L~~n~l~~---~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~  508 (552)
                      ++|++|++++|++++   ..+..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..|. .+.+++.| 
T Consensus       449 ~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~l~~l~~L-  526 (606)
T 3t6q_A          449 PALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIE-ALSHLKGI-  526 (606)
T ss_dssp             TTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGG-GGTTCCSC-
T ss_pred             CCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChh-HhCccccc-
Confidence            777777777777664   2234566677777777777777766666677777777777777777666665 66677777 


Q ss_pred             EEEccCCeeeEEcCCCCcCcccccEEecCCCCCCCCCC
Q 047285          509 WFSASGNSLILKFNPNWVPPFQLETLQLRSCHLGPHFP  546 (552)
Q Consensus       509 ~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~iP  546 (552)
                      +|++++|++++..|..+..+.+|+.|++++|++....+
T Consensus       527 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          527 YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence            77777777776655556666677777777777765544

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=2.8e-43  Score=381.63  Aligned_cols=453  Identities=21%  Similarity=0.194  Sum_probs=331.9

Q ss_pred             CcEEEEEcCCCCccCCC--Cchhhccc--CccccCccccccCccccCCCCCCEEeCCCCcCCCCccCc-ccCCCCCCCEE
Q 047285           82 GHVLQLSLQNPFSYLGG--DLREVKAG--SNYERSKLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPK-YLGSLENLRYL  156 (552)
Q Consensus        82 ~~v~~L~l~~~~~~~~~--~l~~l~~~--~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~-~~~~l~~L~~L  156 (552)
                      .+++.|++++..+....  .+..+..+  .+...+.+.+..|..++++++|++|++++|.+++  +|. .|+.+++|++|
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~~~~~~l~~L~~L  102 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ--LSDKTFAFCTNLTEL  102 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCC--CCTTTTTTCTTCSEE
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCc--cChhhhccCCCCCEE
Confidence            57899999886543321  12222221  2334467777777788888888888888888884  454 68888888888


Q ss_pred             eCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEE
Q 047285          157 NLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLK  236 (552)
Q Consensus       157 ~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~  236 (552)
                      ++++|++++..|..++++++|++|++++|.++..+..     .+..+++|++|++++|.+++..........+++|++|+
T Consensus       103 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-----~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~  177 (680)
T 1ziw_A          103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG-----TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLE  177 (680)
T ss_dssp             ECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCC-----SSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEE
T ss_pred             ECCCCccCccChhHccccCCCCEEECCCCcccccCch-----hhcccccCCEEEccCCcccccCHHHhhccccccccEEE
Confidence            8888888876667788888888888888877664332     26778889999999888877533222234568889999


Q ss_pred             cCCCCCCCCCCCcccCC---------------------------CCCceeecCCCCCCCCCccccccccCCC--CccEEe
Q 047285          237 LTKCQLCHFPPLLSANF---------------------------SSLKALHLAINNFDNSLFQYGSWVFGLR--NLVFID  287 (552)
Q Consensus       237 l~~n~~~~~~~~~~~~l---------------------------~~L~~L~l~~n~~~~~~~~~~~~~~~l~--~L~~L~  287 (552)
                      +++|.+.+..+..+..+                           ++|+.|++++|.+.+..+.   ++..++  +|++|+
T Consensus       178 L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~---~~~~l~~~~L~~L~  254 (680)
T 1ziw_A          178 LSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT---TFLGLKWTNLTMLD  254 (680)
T ss_dssp             CTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTT---TTGGGGGSCCCEEE
T ss_pred             CCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChh---HhhccCcCCCCEEE
Confidence            99888888877766554                           4456666777777666665   555554  489999


Q ss_pred             ccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceee--------cCccccCCCCccCEE
Q 047285          288 LSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGT--------ISSVGLENLTSIETL  359 (552)
Q Consensus       288 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~--------~~~~~l~~l~~L~~L  359 (552)
                      +++|.+.+..+..+..+++|++|++++|.+++..|..+..+++|++|++++|...+.        +....+..+++|+.|
T Consensus       255 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L  334 (680)
T 1ziw_A          255 LSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHL  334 (680)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEE
T ss_pred             CCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEE
Confidence            999988877778888889999999999988888888888888999998887654432        222247788999999


Q ss_pred             eCCCCCCCCCCCchhHhhcccCceeecccccCCCCC-----------------------ccccccccccCCCCCCEEEcc
Q 047285          360 DLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDF-----------------------SQVLDTFSSCGAYALESLDLS  416 (552)
Q Consensus       360 ~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~-----------------------~~~~~~~~~~~~~~L~~L~ls  416 (552)
                      ++++|. +.+..+..+..+++|+.++++.+......                       .....+..+..+++|++|+++
T Consensus       335 ~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  413 (680)
T 1ziw_A          335 NMEDND-IPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLG  413 (680)
T ss_dssp             ECCSCC-BCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             ECCCCc-cCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCC
Confidence            999998 88888888999999998888754322111                       111122334556677777777


Q ss_pred             CCcCcccCc-hhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCC--ccCcccccCCCCCCeeeCCCcccc
Q 047285          417 ICQISGHLT-NQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLN--GFIPLSLGKLSHLEYLDLSNNKLN  493 (552)
Q Consensus       417 ~n~~~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~  493 (552)
                      +|.+++.++ ..+..+++|++|++++|++.+..+..+..+++|++|++++|.+.  +.+|..+.++++|++|++++|+++
T Consensus       414 ~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~  493 (680)
T 1ziw_A          414 LNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA  493 (680)
T ss_dssp             SSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCC
T ss_pred             CCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCC
Confidence            777766544 56667777777777777777666667777777777777777765  567888888999999999999997


Q ss_pred             eecCHHhhhcCCCCCEEEccCCeeeEEcC--------CCCcCcccccEEecCCCCCCCCCCc
Q 047285          494 ASLSEIHFVNLTKLTWFSASGNSLILKFN--------PNWVPPFQLETLQLRSCHLGPHFPS  547 (552)
Q Consensus       494 ~~~~~~~~~~l~~L~~L~L~~n~~~~~~~--------~~~~~~~~L~~L~l~~n~~~~~iP~  547 (552)
                      +..+. .+.++++|++|++++|++.+..+        ..+..+.+|+.|++++|+++ .+|.
T Consensus       494 ~i~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~  553 (680)
T 1ziw_A          494 NINDD-MLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPV  553 (680)
T ss_dssp             CCCTT-TTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-CCCT
T ss_pred             cCChh-hhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC-CCCH
Confidence            65554 78889999999999999875422        23677889999999999998 6775

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=9.7e-44  Score=377.56  Aligned_cols=423  Identities=22%  Similarity=0.207  Sum_probs=323.0

Q ss_pred             CcEEEEEcCCCCccCCCCchhhcccCccccCccccccCccccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCC
Q 047285           82 GHVLQLSLQNPFSYLGGDLREVKAGSNYERSKLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGA  161 (552)
Q Consensus        82 ~~v~~L~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~  161 (552)
                      .+++.|++++                    +.+++..+..|.++++|++|++++|.+++. .|+.|+++++|++|++++|
T Consensus        28 ~~l~~L~Ls~--------------------n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i-~~~~~~~l~~L~~L~L~~n   86 (570)
T 2z63_A           28 FSTKNLDLSF--------------------NPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGN   86 (570)
T ss_dssp             SSCCEEECCS--------------------CCCCEECTTTTTTCSSCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTC
T ss_pred             ccccEEEccC--------------------CccCccChhHhhCCCCceEEECCCCcCCcc-CcccccCchhCCEEeCcCC
Confidence            4678888877                    467766677888899999999999988863 5677888999999999999


Q ss_pred             cCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCC
Q 047285          162 KFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQ  241 (552)
Q Consensus       162 ~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~  241 (552)
                      ++++..|..++++++|++|++++|.++.++...     +..+++|++|++++|.+... .++..+.++++|++|++++|.
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~-----~~~l~~L~~L~L~~n~l~~~-~lp~~~~~l~~L~~L~l~~n~  160 (570)
T 2z63_A           87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFP-----IGHLKTLKELNVAHNLIQSF-KLPEYFSNLTNLEHLDLSSNK  160 (570)
T ss_dssp             CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCS-----CTTCTTCCEEECCSSCCCCC-CCCGGGGGCTTCCEEECTTSC
T ss_pred             cCCccCHhhhcCccccccccccccccccCCCcc-----ccccccccEEecCCCcccee-cChhhhcccCCCCEEeCcCCc
Confidence            888777778888999999999988887765422     77888899999998888763 346667788889999999888


Q ss_pred             CCCCCCCcccCCCCC----ceeecCCCCCCCCCcccc-------------------------------------------
Q 047285          242 LCHFPPLLSANFSSL----KALHLAINNFDNSLFQYG-------------------------------------------  274 (552)
Q Consensus       242 ~~~~~~~~~~~l~~L----~~L~l~~n~~~~~~~~~~-------------------------------------------  274 (552)
                      +.+..+..+..+++|    +.+++++|.+.+..+...                                           
T Consensus       161 l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~  240 (570)
T 2z63_A          161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE  240 (570)
T ss_dssp             CCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCC
T ss_pred             cceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCc
Confidence            888877777777777    777887777665443310                                           


Q ss_pred             -----------------------------------ccccCCCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCC
Q 047285          275 -----------------------------------SWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNS  319 (552)
Q Consensus       275 -----------------------------------~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~  319 (552)
                                                         ..+..+++|++|++++|.+. .+|..+..+ +|++|++++|.+. 
T Consensus       241 ~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-  317 (570)
T 2z63_A          241 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-  317 (570)
T ss_dssp             SSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-
T ss_pred             hhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-
Confidence                                               01223344455555555444 344444444 5555555555544 


Q ss_pred             CCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCCCCCCCCC--chhHhhcccCceeecccccCCCCCcc
Q 047285          320 TTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKI--PTSFARLCKLTSVDLSLIDLSQDFSQ  397 (552)
Q Consensus       320 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~--~~~~~~l~~L~~l~l~~~~~~~~~~~  397 (552)
                      .+|.  ..+++|+.|++++|.+.+..+.   ..+++|+.|++++|. +++..  +..+..+++|+.++++......    
T Consensus       318 ~l~~--~~l~~L~~L~l~~n~~~~~~~~---~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~n~l~~----  387 (570)
T 2z63_A          318 QFPT--LKLKSLKRLTFTSNKGGNAFSE---VDLPSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYLDLSFNGVIT----  387 (570)
T ss_dssp             SCCB--CBCSSCCEEEEESCBSCCBCCC---CBCTTCCEEECCSSC-CBEEEEEEHHHHTCSCCCEEECCSCSEEE----
T ss_pred             ccCc--ccccccCEEeCcCCcccccccc---ccCCCCCEEeCcCCc-cCccccccccccccCccCEEECCCCcccc----
Confidence            2222  2445556666665555443332   567888999999987 66543  7788889988888887654332    


Q ss_pred             ccccccccCCCCCCEEEccCCcCcccCc-hhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCC-ccCccc
Q 047285          398 VLDTFSSCGAYALESLDLSICQISGHLT-NQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLN-GFIPLS  475 (552)
Q Consensus       398 ~~~~~~~~~~~~L~~L~ls~n~~~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~  475 (552)
                       ... .+..+++|++|++++|.+++..+ ..+..+++|++|++++|++.+..|..+..+++|++|++++|.++ +.+|..
T Consensus       388 -~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~  465 (570)
T 2z63_A          388 -MSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI  465 (570)
T ss_dssp             -EEE-EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC
T ss_pred             -ccc-cccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhh
Confidence             111 15567899999999999987766 56889999999999999999889999999999999999999997 578999


Q ss_pred             ccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcccccEEecCCCCCCCCCCc
Q 047285          476 LGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLGPHFPS  547 (552)
Q Consensus       476 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~iP~  547 (552)
                      +..+++|++|++++|++++..|. .+..+++|++|++++|++.+..|..+..+++|+.|++++|++++..|.
T Consensus       466 ~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          466 FTELRNLTFLDLSQCQLEQLSPT-AFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             CTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             hhcccCCCEEECCCCccccCChh-hhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            99999999999999999888787 799999999999999999988888889999999999999999998883

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.5e-43  Score=391.20  Aligned_cols=466  Identities=21%  Similarity=0.191  Sum_probs=281.6

Q ss_pred             cccCceEecCCCCcEEEEEcCCCCccCC--CCc---hhhcccCccccCcccccc-CccccCCCCCCEEeCCCCcCCCCcc
Q 047285           70 CKWAGVFCSNITGHVLQLSLQNPFSYLG--GDL---REVKAGSNYERSKLGGKV-NPSLVDLKHLIHLDLSGNDFEGIQI  143 (552)
Q Consensus        70 c~w~gv~c~~~~~~v~~L~l~~~~~~~~--~~l---~~l~~~~~~~~~~~~~~~-~~~l~~l~~L~~L~Ls~n~~~~~~~  143 (552)
                      |.|..|.+  ...+++.|+|++..+...  ..+   +.++.+ +...+...+.+ |..|.++++|++|+|++|.+.+. .
T Consensus        14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~L-dLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~-~   89 (844)
T 3j0a_A           14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLL-ELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFL-H   89 (844)
T ss_dssp             CCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEE-EECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEE-C
T ss_pred             CCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEE-eCCCCCCccccCHHHhcCCCCCCEEECCCCcCccc-C
Confidence            56777766  457889999988532211  111   111111 11222233333 34455555555555555555542 4


Q ss_pred             CcccCCCCCCCEEeCCCCcCCCCCccc--cCCCCCCCEEeccCCCCCCCccccCCccccCCCCCCCEEeCCCCcCCCCcc
Q 047285          144 PKYLGSLENLRYLNLSGAKFAGMIPLQ--LGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASD  221 (552)
Q Consensus       144 p~~~~~l~~L~~L~L~~~~~~~~lp~~--l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~  221 (552)
                      |+.|+++++|++|+|++|.+++.+|..  ++++++|++|++++|.+...+..    +.+.++++|++|++++|.+.+.  
T Consensus        90 p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~----~~~~~L~~L~~L~Ls~N~i~~~--  163 (844)
T 3j0a_A           90 PDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH----PSFGKLNSLKSIDFSSNQIFLV--  163 (844)
T ss_dssp             TTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCC----GGGGTCSSCCEEEEESSCCCCC--
T ss_pred             HhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccc----hhHhhCCCCCEEECCCCcCCee--
Confidence            555555555555555555555444433  55555555555555554433210    1245555555555555555442  


Q ss_pred             hhhhcCCC--CCCCEEEcCCCCCCCCCCCcccCCCC------CceeecCCCCCCCCCcccccc-----------------
Q 047285          222 WLLVTNSL--PSLKVLKLTKCQLCHFPPLLSANFSS------LKALHLAINNFDNSLFQYGSW-----------------  276 (552)
Q Consensus       222 ~~~~~~~~--~~L~~L~l~~n~~~~~~~~~~~~l~~------L~~L~l~~n~~~~~~~~~~~~-----------------  276 (552)
                      .+..+..+  ++|+.|++++|.+.+..+..+..+++      |+.|++++|.+.+..+.....                 
T Consensus       164 ~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~  243 (844)
T 3j0a_A          164 CEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIM  243 (844)
T ss_dssp             CSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCC
T ss_pred             CHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccc
Confidence            12222222  45555666666555555554444443      677777777655443321100                 


Q ss_pred             ----------------ccC--CCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccC
Q 047285          277 ----------------VFG--LRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAW  338 (552)
Q Consensus       277 ----------------~~~--l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~  338 (552)
                                      +..  .++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|++|++++
T Consensus       244 ~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~  323 (844)
T 3j0a_A          244 GAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY  323 (844)
T ss_dssp             BCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEES
T ss_pred             cccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCC
Confidence                            011  25677777777777766677777778888888888887777777777778888888888


Q ss_pred             ccceeecCccccCCCCccCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCC-CCcccccccc---------ccCCC
Q 047285          339 NSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQ-DFSQVLDTFS---------SCGAY  408 (552)
Q Consensus       339 n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~-~~~~~~~~~~---------~~~~~  408 (552)
                      |.+++..+.. +..+++|+.|++++|. +.+..+..|..+++|+.++++.+.... ...+.+....         -....
T Consensus       324 N~l~~~~~~~-~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~  401 (844)
T 3j0a_A          324 NLLGELYSSN-FYGLPKVAYIDLQKNH-IAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINL  401 (844)
T ss_dssp             CCCSCCCSCS-CSSCTTCCEEECCSCC-CCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCT
T ss_pred             CCCCccCHHH-hcCCCCCCEEECCCCC-CCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCccccccccc
Confidence            8777544544 7777888888888886 666666677777777777776654432 1110000000         00122


Q ss_pred             CCCEEEccCCcCcccC-chhhcCCCCCcEEECCCCcccCCCcc-cccCCCCCCEEeCCCCcCC-----ccCcccccCCCC
Q 047285          409 ALESLDLSICQISGHL-TNQLLQFKSLHTLELGHNSLFGPLPP-ALGELSSLKKLDLSNNMLN-----GFIPLSLGKLSH  481 (552)
Q Consensus       409 ~L~~L~ls~n~~~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~-----~~~~~~~~~l~~  481 (552)
                      +++.|++++|.+++.. +..+..+++|+.|++++|++++..+. .+..+++|+.|++++|.++     +..+..+.++++
T Consensus       402 ~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~  481 (844)
T 3j0a_A          402 TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSH  481 (844)
T ss_dssp             TCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCC
T ss_pred             ccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCccc
Confidence            3455555555554322 22345778888888888888754332 3456788888888888876     334456778888


Q ss_pred             CCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcccccEEecCCCCCCCCCCcccc
Q 047285          482 LEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLGPHFPSWLH  550 (552)
Q Consensus       482 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~iP~~l~  550 (552)
                      |++|+|++|++++..|. .+.++++|++|+|++|++++..+..+.  .+|+.|++++|++++.+|+.+.
T Consensus       482 L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~  547 (844)
T 3j0a_A          482 LQVLYLNHNYLNSLPPG-VFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV  547 (844)
T ss_dssp             EECCCCCHHHHTTCCTT-SSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS
T ss_pred             ccEEECCCCcccccChh-HccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC
Confidence            99999999988776666 688889999999999988865554444  6888999999999888887654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=5e-42  Score=371.84  Aligned_cols=417  Identities=23%  Similarity=0.212  Sum_probs=301.4

Q ss_pred             ccccCccccccCccccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCC
Q 047285          108 NYERSKLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFL  187 (552)
Q Consensus       108 ~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l  187 (552)
                      +...+.+.+..+..+.++++|++|++++|.+++. .|+.++++++|++|++++|++++..+..++++++|++|++++|.+
T Consensus        31 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l  109 (680)
T 1ziw_A           31 NLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKL-EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSI  109 (680)
T ss_dssp             ECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCC-CTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC
T ss_pred             ECCCCCCCCcCHHHHhCCCcCcEEECCCCccCcc-CHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCcc
Confidence            4455677776667799999999999999999874 688899999999999999999865555799999999999999988


Q ss_pred             CCCccccCCccccCCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCccc--CCCCCceeecCCCC
Q 047285          188 SNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSA--NFSSLKALHLAINN  265 (552)
Q Consensus       188 ~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~--~l~~L~~L~l~~n~  265 (552)
                      +.++..     .+.++++|++|++++|.+.+.  .+..+.++++|++|++++|.+++..+..+.  .+++|+.|++++|.
T Consensus       110 ~~~~~~-----~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~  182 (680)
T 1ziw_A          110 QKIKNN-----PFVKQKNLITLDLSHNGLSST--KLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ  182 (680)
T ss_dssp             CCCCSC-----TTTTCTTCCEEECCSSCCSCC--CCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred             CccChh-----HccccCCCCEEECCCCccccc--CchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc
Confidence            776533     278899999999999988773  455677899999999999999888776554  45889999999999


Q ss_pred             CCCCCccccccccCC---------------------------CCccEEeccCccccccCchhhhcccC--CcEEeccCCC
Q 047285          266 FDNSLFQYGSWVFGL---------------------------RNLVFIDLSSNQFQGQIPIGLRNLTS--LRHLDLRFNY  316 (552)
Q Consensus       266 ~~~~~~~~~~~~~~l---------------------------~~L~~L~L~~n~~~~~~~~~l~~l~~--L~~L~l~~n~  316 (552)
                      +.+..+.   .+..+                           ++|+.|++++|.+.+..|..+..++.  |++|++++|.
T Consensus       183 l~~~~~~---~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~  259 (680)
T 1ziw_A          183 IKEFSPG---CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN  259 (680)
T ss_dssp             CCCBCTT---GGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSC
T ss_pred             ccccChh---hhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCC
Confidence            8887665   33333                           56677777777777777777776654  8888888888


Q ss_pred             CCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCCCCCCC-----CCch----hHhhcccCceeecc
Q 047285          317 FNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGG-----KIPT----SFARLCKLTSVDLS  387 (552)
Q Consensus       317 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~-----~~~~----~~~~l~~L~~l~l~  387 (552)
                      +++..+..+..+++|++|++++|.+.+..+.. +..+++|+.|++++|. ..+     .+|.    .+..+++|+.++++
T Consensus       260 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~~~-~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~  337 (680)
T 1ziw_A          260 LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHS-LHGLFNVRYLNLKRSF-TKQSISLASLPKIDDFSFQWLKCLEHLNME  337 (680)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSCCBSEECTTT-TTTCTTCCEEECTTCB-CCC------CCEECTTTTTTCTTCCEEECC
T ss_pred             cCccCcccccCcccccEeeCCCCccCccChhh-hcCCCCccEEeccchh-hhcccccccccccChhhcccCCCCCEEECC
Confidence            87777777888888888888888887665555 7788888888887764 322     2332    56677777777776


Q ss_pred             cccCCCCCccccccccccCC----------------------------CCCCEEEccCCcCcccCchhhcCCCCCcEEEC
Q 047285          388 LIDLSQDFSQVLDTFSSCGA----------------------------YALESLDLSICQISGHLTNQLLQFKSLHTLEL  439 (552)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~----------------------------~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L  439 (552)
                      .........     ..+.++                            ++|++|++++|.+++..|..+..+++|+.|++
T Consensus       338 ~n~l~~~~~-----~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  412 (680)
T 1ziw_A          338 DNDIPGIKS-----NMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDL  412 (680)
T ss_dssp             SCCBCCCCT-----TTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccCCCCh-----hHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeC
Confidence            554433111     111222                            24555555556666555666666666667777


Q ss_pred             CCCcccCCCc-ccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccc--eecCHHhhhcCCCCCEEEccCCe
Q 047285          440 GHNSLFGPLP-PALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLN--ASLSEIHFVNLTKLTWFSASGNS  516 (552)
Q Consensus       440 ~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~~l~~L~~L~L~~n~  516 (552)
                      ++|++++.+| ..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.  +.+|. .+.++++|++|++++|+
T Consensus       413 ~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~-~~~~l~~L~~L~Ls~N~  491 (680)
T 1ziw_A          413 GLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPS-PFQPLRNLTILDLSNNN  491 (680)
T ss_dssp             CSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSC-TTTTCTTCCEEECCSSC
T ss_pred             CCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCc-ccccCCCCCEEECCCCC
Confidence            6666665444 45666666777777777666555666666677777777776664  34555 57777777778887777


Q ss_pred             eeEEcCCCCcCcccccEEecCCCCCCC
Q 047285          517 LILKFNPNWVPPFQLETLQLRSCHLGP  543 (552)
Q Consensus       517 ~~~~~~~~~~~~~~L~~L~l~~n~~~~  543 (552)
                      +.+..+..+..+.+|+.|++++|++++
T Consensus       492 l~~i~~~~~~~l~~L~~L~Ls~N~l~~  518 (680)
T 1ziw_A          492 IANINDDMLEGLEKLEILDLQHNNLAR  518 (680)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCGG
T ss_pred             CCcCChhhhccccccCEEeCCCCCccc
Confidence            776666667777778888888877764

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=2.7e-42  Score=368.96  Aligned_cols=419  Identities=22%  Similarity=0.189  Sum_probs=319.8

Q ss_pred             CcEEEEEcCCCCccCCCCchhhcccCccccCccccccCccccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCC
Q 047285           82 GHVLQLSLQNPFSYLGGDLREVKAGSNYERSKLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGA  161 (552)
Q Consensus        82 ~~v~~L~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~  161 (552)
                      .+++.|++++.                    .+.+..|..|.++++|++|++++|.+++. .|+.|+++++|++|++++|
T Consensus        56 ~~L~~L~Ls~n--------------------~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~L~~n  114 (606)
T 3vq2_A           56 SELQWLDLSRC--------------------EIETIEDKAWHGLHHLSNLILTGNPIQSF-SPGSFSGLTSLENLVAVET  114 (606)
T ss_dssp             TTCCEEECTTC--------------------CCCEECTTTTTTCTTCCEEECTTCCCCCC-CTTSSTTCTTCCEEECTTS
T ss_pred             ccCcEEeCCCC--------------------cccccCHHHhhchhhcCEeECCCCccccc-ChhhcCCcccCCEEEccCC
Confidence            46777888763                    56666666777777777777777777753 5777777777777777777


Q ss_pred             cCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCCCCCCEEeCCCCcCCCCcchhhhcCCCCC----CCEEEc
Q 047285          162 KFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPS----LKVLKL  237 (552)
Q Consensus       162 ~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~----L~~L~l  237 (552)
                      ++++..|..++++++|++|++++|.+.....    ...+.++++|++|++++|.+.+..  +..+..+++    +++|++
T Consensus       115 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~l----p~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~~l~~L~l  188 (606)
T 3vq2_A          115 KLASLESFPIGQLITLKKLNVAHNFIHSCKL----PAYFSNLTNLVHVDLSYNYIQTIT--VNDLQFLRENPQVNLSLDM  188 (606)
T ss_dssp             CCCCSSSSCCTTCTTCCEEECCSSCCCCCCC----CGGGGTCTTCCEEECCSSCCCEEC--TTTTHHHHHCTTCCCEEEC
T ss_pred             ccccccccccCCCCCCCEEeCCCCcccceec----hHhHhhcCCCCEEEccCCcceecC--hhhhhhhhccccccceeec
Confidence            7776555667777777777777777654221    012667777777777777666531  111111111    224444


Q ss_pred             CCCCCCCCCCCc--------------------------------------------------------------------
Q 047285          238 TKCQLCHFPPLL--------------------------------------------------------------------  249 (552)
Q Consensus       238 ~~n~~~~~~~~~--------------------------------------------------------------------  249 (552)
                      ++|.+.+.++..                                                                    
T Consensus       189 ~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l  268 (606)
T 3vq2_A          189 SLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRL  268 (606)
T ss_dssp             TTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEE
T ss_pred             cCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheec
Confidence            444443333322                                                                    


Q ss_pred             ------------ccCCCCCceeecCCCCCCCCCccccccccCCCCccEEeccCccccccCchhhhcccCCcEEeccCCCC
Q 047285          250 ------------SANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYF  317 (552)
Q Consensus       250 ------------~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l  317 (552)
                                  +..+++|+.|+++++.+... +    .+..+++|++|++++|.+ +.+| .+ .+++|++|++++|..
T Consensus       269 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~----~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~  340 (606)
T 3vq2_A          269 TYTNDFSDDIVKFHCLANVSAMSLAGVSIKYL-E----DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKG  340 (606)
T ss_dssp             CCCTTCCGGGGSCGGGTTCSEEEEESCCCCCC-C----CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSS
T ss_pred             cccccccccccccccCCCCCEEEecCccchhh-h----hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcC
Confidence                        33445666666666655332 1    567789999999999999 5788 45 899999999999966


Q ss_pred             CCCCCccCCCCCCCCEEEccCccceeec--CccccCCCCccCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCC
Q 047285          318 NSTTPGWLSKFNDLEFLSVAWNSLQGTI--SSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDF  395 (552)
Q Consensus       318 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~--~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~  395 (552)
                      .+..  .+..+++|++|++++|.+++..  +.. +..+++|++|++++|. +++ +|..+..+++|+.++++........
T Consensus       341 ~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~-~~~~~~L~~L~L~~n~-l~~-~~~~~~~l~~L~~L~l~~n~l~~~~  415 (606)
T 3vq2_A          341 SISF--KKVALPSLSYLDLSRNALSFSGCCSYS-DLGTNSLRHLDLSFNG-AII-MSANFMGLEELQHLDFQHSTLKRVT  415 (606)
T ss_dssp             CEEC--CCCCCTTCCEEECCSSCEEEEEECCHH-HHCCSCCCEEECCSCS-EEE-ECCCCTTCTTCCEEECTTSEEESTT
T ss_pred             ccch--hhccCCCCCEEECcCCccCCCcchhhh-hccCCcccEeECCCCc-ccc-chhhccCCCCCCeeECCCCccCCcc
Confidence            5544  5678999999999999998653  555 8889999999999998 664 6688999999999998876544321


Q ss_pred             ccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccC-CCcccccCCCCCCEEeCCCCcCCccCcc
Q 047285          396 SQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFG-PLPPALGELSSLKKLDLSNNMLNGFIPL  474 (552)
Q Consensus       396 ~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~  474 (552)
                      .    ...+..+++|++|++++|.+++..|..+..+++|++|++++|++++ .+|..+..+++|++|++++|.+++..|.
T Consensus       416 ~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  491 (606)
T 3vq2_A          416 E----FSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWG  491 (606)
T ss_dssp             T----TTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT
T ss_pred             C----hhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChh
Confidence            1    1234567899999999999999999999999999999999999997 4788999999999999999999988899


Q ss_pred             cccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcc-cccEEecCCCCCCCCCC
Q 047285          475 SLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPF-QLETLQLRSCHLGPHFP  546 (552)
Q Consensus       475 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~-~L~~L~l~~n~~~~~iP  546 (552)
                      .+.++++|++|++++|++++..|. .+.++++|++|++++|+++ .+|..+..+. +|+.|++++|++....|
T Consensus       492 ~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~  562 (606)
T 3vq2_A          492 VFDTLHRLQLLNMSHNNLLFLDSS-HYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE  562 (606)
T ss_dssp             TTTTCTTCCEEECCSSCCSCEEGG-GTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred             hhcccccCCEEECCCCcCCCcCHH-HccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence            999999999999999999988887 7999999999999999998 6677787776 69999999999997655

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.7e-42  Score=366.24  Aligned_cols=431  Identities=21%  Similarity=0.195  Sum_probs=326.6

Q ss_pred             CcccCceEecCCC-----------CcEEEEEcCCCCccCCCCchhhcccCccccCccccccCccccCCCCCCEEeCCCCc
Q 047285           69 CCKWAGVFCSNIT-----------GHVLQLSLQNPFSYLGGDLREVKAGSNYERSKLGGKVNPSLVDLKHLIHLDLSGND  137 (552)
Q Consensus        69 ~c~w~gv~c~~~~-----------~~v~~L~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~  137 (552)
                      .|.|.|+ |+...           .+++.|++++                    +.+.+..|..+.++++|++|++++|.
T Consensus         3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~--------------------n~l~~~~~~~~~~l~~L~~L~Ls~n~   61 (549)
T 2z81_A            3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSF--------------------NKITYIGHGDLRACANLQVLILKSSR   61 (549)
T ss_dssp             EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCS--------------------SCCCEECSSTTSSCTTCCEEECTTSC
T ss_pred             cCCCCce-EECCCCccccccccCCCCccEEECcC--------------------CccCccChhhhhcCCcccEEECCCCC
Confidence            4889888 86432           2566666665                    57777778889999999999999999


Q ss_pred             CCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCCCCCCEEeCCCCcCC
Q 047285          138 FEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLS  217 (552)
Q Consensus       138 ~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~  217 (552)
                      +++. .|+.|+.+++|++|++++|++++..|..++++++|++|++++|.++.++..    +.+..+++|++|++++|.+.
T Consensus        62 i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~~l~~L~~L~L~~n~~~  136 (549)
T 2z81_A           62 INTI-EGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVT----SLFPNLTNLQTLRIGNVETF  136 (549)
T ss_dssp             CCEE-CTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSS----CSCTTCTTCCEEEEEESSSC
T ss_pred             cCcc-ChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchh----hhhhccCCccEEECCCCccc
Confidence            9963 668899999999999999999987777799999999999999988754321    23788999999999999854


Q ss_pred             CCcchh-hhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCCccEEeccCcccccc
Q 047285          218 KASDWL-LVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQ  296 (552)
Q Consensus       218 ~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~  296 (552)
                      +  .++ ..+..+++|++|++++|.+.+..|..+..+++|+.|+++.|.+......   .+..+++|++|++++|.+++.
T Consensus       137 ~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~---~~~~l~~L~~L~L~~n~l~~~  211 (549)
T 2z81_A          137 S--EIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEI---FADILSSVRYLELRDTNLARF  211 (549)
T ss_dssp             C--EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHH---HHHSTTTBSEEEEESCBCTTC
T ss_pred             c--ccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchh---hHhhcccccEEEccCCccccc
Confidence            4  233 4678899999999999999888888887777777777666654322111   223455566666666555542


Q ss_pred             ---------------------------Cc----hhhhcccCCcEEeccCCCCCCCCC---------cc------------
Q 047285          297 ---------------------------IP----IGLRNLTSLRHLDLRFNYFNSTTP---------GW------------  324 (552)
Q Consensus       297 ---------------------------~~----~~l~~l~~L~~L~l~~n~l~~~~~---------~~------------  324 (552)
                                                 .+    ..+..+++|+.+++++|.+.+...         ..            
T Consensus       212 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~  291 (549)
T 2z81_A          212 QFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRL  291 (549)
T ss_dssp             CCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESC
T ss_pred             cccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhccccccccccc
Confidence                                       11    122344566666666665543210         00            


Q ss_pred             --------------CCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCCCCCCCCCchh---HhhcccCceeecc
Q 047285          325 --------------LSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTS---FARLCKLTSVDLS  387 (552)
Q Consensus       325 --------------l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~---~~~l~~L~~l~l~  387 (552)
                                    +...++|+.|++++|.+. .+|...+..+++|++|++++|. +++.+|..   ++.+++|+.++++
T Consensus       292 ~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~l~~L~~L~Ls  369 (549)
T 2z81_A          292 HIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENL-MVEEYLKNSACKGAWPSLQTLVLS  369 (549)
T ss_dssp             BCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSC-CCHHHHHHHTCTTSSTTCCEEECT
T ss_pred             ccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCc-cccccccchhhhhccccCcEEEcc
Confidence                          112357999999999987 7777644679999999999998 87776543   6778888888888


Q ss_pred             cccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCc
Q 047285          388 LIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNM  467 (552)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  467 (552)
                      .+....  .+. ....+..+++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|..+  .++|++|++++|+
T Consensus       370 ~N~l~~--~~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~  442 (549)
T 2z81_A          370 QNHLRS--MQK-TGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNN  442 (549)
T ss_dssp             TSCCCC--HHH-HHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTS--CTTCSEEECCSSC
T ss_pred             CCcccc--ccc-chhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchh--cCCceEEECCCCC
Confidence            765432  110 0112456789999999999998 57888889999999999999997 455443  3689999999999


Q ss_pred             CCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcccccEEecCCCCCCCCCC
Q 047285          468 LNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLGPHFP  546 (552)
Q Consensus       468 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~iP  546 (552)
                      +++.+    ..+++|++|++++|+++ .+|.  ...+++|++|++++|++++..|..+..+.+|+.|++++|++.+..|
T Consensus       443 l~~~~----~~l~~L~~L~Ls~N~l~-~ip~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          443 LDSFS----LFLPRLQELYISRNKLK-TLPD--ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             CSCCC----CCCTTCCEEECCSSCCS-SCCC--GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             hhhhc----ccCChhcEEECCCCccC-cCCC--cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            98643    47899999999999996 6886  4679999999999999998888788999999999999999999988

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=4e-43  Score=375.41  Aligned_cols=388  Identities=19%  Similarity=0.238  Sum_probs=311.2

Q ss_pred             CCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcC------------------------------------------
Q 047285          126 KHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKF------------------------------------------  163 (552)
Q Consensus       126 ~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~------------------------------------------  163 (552)
                      .+++.|+|+++.+.| .+|..++++++|++|+|++|.+                                          
T Consensus        81 ~~V~~L~L~~~~l~g-~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~  159 (636)
T 4eco_A           81 GRVTGLSLEGFGASG-RVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS  159 (636)
T ss_dssp             CCEEEEECTTSCCEE-EECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred             CCEEEEEecCcccCC-cCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHH
Confidence            578999999999999 6999999999999999998843                                          


Q ss_pred             ------------------------------------CCCCccccCCCCCCCEEeccCCCCCC------------------
Q 047285          164 ------------------------------------AGMIPLQLGNLSNLQYLDLSGTFLSN------------------  189 (552)
Q Consensus       164 ------------------------------------~~~lp~~l~~l~~L~~L~l~~n~l~~------------------  189 (552)
                                                          ++ +|..++++++|++|++++|.++.                  
T Consensus       160 ~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~  238 (636)
T 4eco_A          160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY  238 (636)
T ss_dssp             HHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred             HHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhccc
Confidence                                                34 78888889999999999988776                  


Q ss_pred             CccccCCccccC--CCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCC-CCC-CCCCcccCC------CCCcee
Q 047285          190 YDLHVDSLSWLS--GLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQ-LCH-FPPLLSANF------SSLKAL  259 (552)
Q Consensus       190 ~~~~~~~~~~l~--~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~-~~~-~~~~~~~~l------~~L~~L  259 (552)
                      +|.      .+.  ++++|++|++++|.+.+  .+|..+.++++|++|++++|. +++ ..|..+..+      ++|++|
T Consensus       239 ip~------~l~~~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L  310 (636)
T 4eco_A          239 KTE------DLKWDNLKDLTDVEVYNCPNLT--KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQII  310 (636)
T ss_dssp             TTS------CCCGGGCTTCCEEEEECCTTCS--SCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEE
T ss_pred             Cch------hhhhcccCCCCEEEecCCcCCc--cChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEE
Confidence            443      256  88899999999998877  577788889999999999998 877 677666665      889999


Q ss_pred             ecCCCCCCCCCccccccccCCCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCC-CCEEEccC
Q 047285          260 HLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFND-LEFLSVAW  338 (552)
Q Consensus       260 ~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~l~~  338 (552)
                      ++++|.++ .+|.. ..+..+++|++|++++|.+.|.+| .+..+++|++|++++|.++ .+|..+..+++ |++|++++
T Consensus       311 ~L~~n~l~-~ip~~-~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~  386 (636)
T 4eco_A          311 YIGYNNLK-TFPVE-TSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAH  386 (636)
T ss_dssp             ECCSSCCS-SCCCH-HHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCS
T ss_pred             ECCCCcCC-ccCch-hhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccC
Confidence            99999888 44320 046788899999999999988888 8888899999999999888 67777888888 99999999


Q ss_pred             ccceeecCccccCCCC--ccCEEeCCCCCCCCCCCchhHh-------hcccCceeecccccCCCCCccccccccccCCCC
Q 047285          339 NSLQGTISSVGLENLT--SIETLDLSGNSKLGGKIPTSFA-------RLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYA  409 (552)
Q Consensus       339 n~l~~~~~~~~l~~l~--~L~~L~l~~n~~l~~~~~~~~~-------~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~  409 (552)
                      |.++ .+|.. +...+  +|+.|++++|. +++.+|..+.       .+++|+.++++.+....     ++...+..+++
T Consensus       387 N~l~-~lp~~-~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~-----lp~~~~~~l~~  458 (636)
T 4eco_A          387 NKLK-YIPNI-FDAKSVSVMSAIDFSYNE-IGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK-----FPKELFSTGSP  458 (636)
T ss_dssp             SCCS-SCCSC-CCTTCSSCEEEEECCSSC-TTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCS-----CCTHHHHTTCC
T ss_pred             CcCc-ccchh-hhhcccCccCEEECcCCc-CCCcchhhhcccccccccCCCCCEEECcCCccCc-----CCHHHHccCCC
Confidence            9888 77765 55544  89999999998 8888888777       66777777776655442     12222334678


Q ss_pred             CCEEEccCCcCcccCchh-hcCC-------CCCcEEECCCCcccCCCccccc--CCCCCCEEeCCCCcCCccCcccccCC
Q 047285          410 LESLDLSICQISGHLTNQ-LLQF-------KSLHTLELGHNSLFGPLPPALG--ELSSLKKLDLSNNMLNGFIPLSLGKL  479 (552)
Q Consensus       410 L~~L~ls~n~~~~~~~~~-l~~l-------~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~L~~n~l~~~~~~~~~~l  479 (552)
                      |++|++++|.++ .+|.. +...       ++|+.|++++|+++ .+|..+.  .+++|++|++++|++++ +|..+.++
T Consensus       459 L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l  535 (636)
T 4eco_A          459 LSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNS  535 (636)
T ss_dssp             CSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGC
T ss_pred             CCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcC
Confidence            999999999888 44443 3322       28999999999988 7888776  88999999999999986 88888889


Q ss_pred             CCCCeeeC------CCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcccccEEecCCCCCC
Q 047285          480 SHLEYLDL------SNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLG  542 (552)
Q Consensus       480 ~~L~~L~L------~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~  542 (552)
                      ++|++|++      ++|++.+.+|. .+..+++|++|+|++|++ +.+|..+.  ++|+.|++++|++.
T Consensus       536 ~~L~~L~Ls~N~~ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~  600 (636)
T 4eco_A          536 STLKGFGIRNQRDAQGNRTLREWPE-GITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNI  600 (636)
T ss_dssp             SSCCEEECCSCBCTTCCBCCCCCCT-TGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTC
T ss_pred             CCCCEEECCCCcccccCcccccChH-HHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCc
Confidence            99999998      45777888887 788899999999999998 67777665  68999999999765

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=4.9e-41  Score=356.71  Aligned_cols=403  Identities=24%  Similarity=0.257  Sum_probs=303.3

Q ss_pred             CCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCCCC
Q 047285          126 KHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYM  205 (552)
Q Consensus       126 ~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~  205 (552)
                      +++++|++++|.+++. .+..|..+++|++|++++|++++..|..++++++|++|++++|.++.++..     .+..+++
T Consensus        28 ~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~-----~~~~l~~  101 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG-----AFSGLSS  101 (570)
T ss_dssp             SSCCEEECCSCCCCEE-CTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT-----TTTTCTT
T ss_pred             ccccEEEccCCccCcc-ChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHh-----hhcCccc
Confidence            5799999999999963 567899999999999999999987778899999999999999988776543     3889999


Q ss_pred             CCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCC-CCCcccCCCCCceeecCCCCCCCCCccccccccCCCCc-
Q 047285          206 LEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHF-PPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNL-  283 (552)
Q Consensus       206 L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L-  283 (552)
                      |++|++++|.+...+..  .++.+++|++|++++|.+.+. .|..+.++++|+.|++++|.+++..+.   .+..+++| 
T Consensus       102 L~~L~L~~n~l~~l~~~--~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~  176 (570)
T 2z63_A          102 LQKLVAVETNLASLENF--PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT---DLRVLHQMP  176 (570)
T ss_dssp             CCEEECTTSCCCCSTTC--SCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGG---GGHHHHTCT
T ss_pred             cccccccccccccCCCc--cccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHH---Hccchhccc
Confidence            99999999999885432  478999999999999999874 588899999999999999999887666   55556666 


Q ss_pred             ---cEEeccCccccccCchhhhcccCCcEEeccCC---------------------------------------------
Q 047285          284 ---VFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFN---------------------------------------------  315 (552)
Q Consensus       284 ---~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n---------------------------------------------  315 (552)
                         +.+++++|.+.+..+..+... +|++|++++|                                             
T Consensus       177 ~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~  255 (570)
T 2z63_A          177 LLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLC  255 (570)
T ss_dssp             TCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGG
T ss_pred             hhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhcccc
Confidence               677777777665544444332 3444444443                                             


Q ss_pred             -------------CCCCCCCccCCCCCCCCEEEccCccceeecCccccCC--------------------CCccCEEeCC
Q 047285          316 -------------YFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLEN--------------------LTSIETLDLS  362 (552)
Q Consensus       316 -------------~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~--------------------l~~L~~L~l~  362 (552)
                                   .+.+..+..+..+++|++|++++|.+. .+|.. +..                    +++|+.|+++
T Consensus       256 ~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~-~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~  333 (570)
T 2z63_A          256 NLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDF-SYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFT  333 (570)
T ss_dssp             GSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBC-CSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEE
T ss_pred             ccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhh-hccCCccEEeeccCcccccCcccccccCEEeCc
Confidence                         112223333444455555555555544 34433 333                    3444444444


Q ss_pred             CCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCC
Q 047285          363 GNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHN  442 (552)
Q Consensus       363 ~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n  442 (552)
                      +|. ..+..+.  ..+++|+.++++........   ..+..+..+++|++|++++|.+++..+. +..+++|+.|++++|
T Consensus       334 ~n~-~~~~~~~--~~~~~L~~L~l~~n~l~~~~---~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n  406 (570)
T 2z63_A          334 SNK-GGNAFSE--VDLPSLEFLDLSRNGLSFKG---CCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHS  406 (570)
T ss_dssp             SCB-SCCBCCC--CBCTTCCEEECCSSCCBEEE---EEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTS
T ss_pred             CCc-ccccccc--ccCCCCCEEeCcCCccCccc---cccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCC
Confidence            444 3333332  44555555555543322110   0012344667889999999888865554 888999999999999


Q ss_pred             cccCCCc-ccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccc-eecCHHhhhcCCCCCEEEccCCeeeEE
Q 047285          443 SLFGPLP-PALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLN-ASLSEIHFVNLTKLTWFSASGNSLILK  520 (552)
Q Consensus       443 ~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~l~~L~~L~L~~n~~~~~  520 (552)
                      ++.+..+ ..+..+++|++|++++|.+.+..|..+.++++|++|++++|+++ +.+|. .+..+++|++|++++|++.+.
T Consensus       407 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~-~~~~l~~L~~L~l~~n~l~~~  485 (570)
T 2z63_A          407 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD-IFTELRNLTFLDLSQCQLEQL  485 (570)
T ss_dssp             EEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS-CCTTCTTCCEEECTTSCCCEE
T ss_pred             ccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchh-hhhcccCCCEEECCCCccccC
Confidence            9987655 56889999999999999999888999999999999999999997 57887 789999999999999999999


Q ss_pred             cCCCCcCcccccEEecCCCCCCCCCCcccc
Q 047285          521 FNPNWVPPFQLETLQLRSCHLGPHFPSWLH  550 (552)
Q Consensus       521 ~~~~~~~~~~L~~L~l~~n~~~~~iP~~l~  550 (552)
                      .|..+..+++|+.|++++|++++..|+.+.
T Consensus       486 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  515 (570)
T 2z63_A          486 SPTAFNSLSSLQVLNMASNQLKSVPDGIFD  515 (570)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred             ChhhhhcccCCCEEeCCCCcCCCCCHHHhh
Confidence            899999999999999999999987776654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.6e-41  Score=375.16  Aligned_cols=440  Identities=20%  Similarity=0.169  Sum_probs=346.1

Q ss_pred             CcEEEEEcCCCCccC---C---CCchhhcccCccccCccccccCccccCCCCCCEEeCCCCcCCCCccCcc--cCCCCCC
Q 047285           82 GHVLQLSLQNPFSYL---G---GDLREVKAGSNYERSKLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKY--LGSLENL  153 (552)
Q Consensus        82 ~~v~~L~l~~~~~~~---~---~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~--~~~l~~L  153 (552)
                      .+++.|++++.....   +   +.++.++. .+...|.+.+..|..|.++++|++|+|++|.+.+ ..|..  ++.+++|
T Consensus        48 ~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~-L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~~~L~~L  125 (844)
T 3j0a_A           48 EQLQLLELGSQYTPLTIDKEAFRNLPNLRI-LDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSD-AVLKDGYFRNLKAL  125 (844)
T ss_dssp             CSCSEEEECTTCCCCEECTTTTSSCTTCCE-EECTTCCCCEECTTSSCSCSSCCCEECTTCCCSS-CCSTTCCCSSCSSC
T ss_pred             ccCeEEeCCCCCCccccCHHHhcCCCCCCE-EECCCCcCcccCHhHccCCcccCEeeCcCCCCCc-ccccCccccccCCC
Confidence            467889998763211   1   22333333 2345578888889999999999999999999987 35554  8999999


Q ss_pred             CEEeCCCCcCCCCCc-cccCCCCCCCEEeccCCCCCCCccccCCccccCCC--CCCCEEeCCCCcCCCCcchhhhcCCCC
Q 047285          154 RYLNLSGAKFAGMIP-LQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGL--YMLEHLDLSQMNLSKASDWLLVTNSLP  230 (552)
Q Consensus       154 ~~L~L~~~~~~~~lp-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l--~~L~~L~ls~n~~~~~~~~~~~~~~~~  230 (552)
                      ++|++++|.+++..| ..++++++|++|++++|.++.....     .+..+  ++|+.|+++.|.+.+  ..+..+..++
T Consensus       126 ~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~-----~l~~l~~~~L~~L~L~~n~l~~--~~~~~~~~~~  198 (844)
T 3j0a_A          126 TRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEH-----ELEPLQGKTLSFFSLAANSLYS--RVSVDWGKCM  198 (844)
T ss_dssp             CEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSG-----GGHHHHHCSSCCCEECCSBSCC--CCCCCCCSSS
T ss_pred             CEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHH-----HcccccCCccceEECCCCcccc--ccccchhhcC
Confidence            999999999987655 5799999999999999988764322     24444  899999999999887  3444444444


Q ss_pred             C------CCEEEcCCCCCCCCCCCcccC--------------------------------------CCCCceeecCCCCC
Q 047285          231 S------LKVLKLTKCQLCHFPPLLSAN--------------------------------------FSSLKALHLAINNF  266 (552)
Q Consensus       231 ~------L~~L~l~~n~~~~~~~~~~~~--------------------------------------l~~L~~L~l~~n~~  266 (552)
                      +      |++|++++|.+.+..+..+..                                      .++|+.|++++|.+
T Consensus       199 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l  278 (844)
T 3j0a_A          199 NPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFV  278 (844)
T ss_dssp             CTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCC
T ss_pred             CccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcc
Confidence            4      999999999876555433221                                      26899999999999


Q ss_pred             CCCCccccccccCCCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecC
Q 047285          267 DNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTIS  346 (552)
Q Consensus       267 ~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~  346 (552)
                      .+..+.   .+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+ ++
T Consensus       279 ~~~~~~---~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~  354 (844)
T 3j0a_A          279 FSLNSR---VFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAI-IQ  354 (844)
T ss_dssp             CEECSC---CSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCC-CC
T ss_pred             cccChh---hhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCc-cC
Confidence            887777   78899999999999999998888899999999999999999999989999999999999999999974 44


Q ss_pred             ccccCCCCccCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCcc---------------cc-ccccccCCCCC
Q 047285          347 SVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQ---------------VL-DTFSSCGAYAL  410 (552)
Q Consensus       347 ~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~---------------~~-~~~~~~~~~~L  410 (552)
                      ...+..+++|+.|++++|. +++. +    .+++|+.+++..+....-...               .+ .......+++|
T Consensus       355 ~~~~~~l~~L~~L~Ls~N~-l~~i-~----~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L  428 (844)
T 3j0a_A          355 DQTFKFLEKLQTLDLRDNA-LTTI-H----FIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHL  428 (844)
T ss_dssp             SSCSCSCCCCCEEEEETCC-SCCC-S----SCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTC
T ss_pred             hhhhcCCCCCCEEECCCCC-CCcc-c----CCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCcc
Confidence            4448999999999999998 6532 2    256666666654433210000               00 00113367899


Q ss_pred             CEEEccCCcCcccCch-hhcCCCCCcEEECCCCccc-----CCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCe
Q 047285          411 ESLDLSICQISGHLTN-QLLQFKSLHTLELGHNSLF-----GPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEY  484 (552)
Q Consensus       411 ~~L~ls~n~~~~~~~~-~l~~l~~L~~L~L~~n~l~-----~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  484 (552)
                      ++|++++|.+++..+. .+..+++|+.|++++|.++     +..+..+..+++|++|+|++|.+++..|..+..+++|+.
T Consensus       429 ~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  508 (844)
T 3j0a_A          429 QILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRG  508 (844)
T ss_dssp             CEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSE
T ss_pred             ceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhhe
Confidence            9999999999865443 4566899999999999997     444567889999999999999999888888999999999


Q ss_pred             eeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcccccEEecCCCCCCCCCC
Q 047285          485 LDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLGPHFP  546 (552)
Q Consensus       485 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~iP  546 (552)
                      |+|++|++++..+. .+.  ++|++|++++|++++..|..+.   +|+.|++++|++....+
T Consensus       509 L~Ls~N~l~~l~~~-~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~  564 (844)
T 3j0a_A          509 LSLNSNRLTVLSHN-DLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECE  564 (844)
T ss_dssp             EEEESCCCSSCCCC-CCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSS
T ss_pred             eECCCCCCCccChh-hhh--ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCcccccc
Confidence            99999999775554 444  8999999999999998887654   79999999999876443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.6e-41  Score=368.99  Aligned_cols=394  Identities=18%  Similarity=0.226  Sum_probs=241.6

Q ss_pred             CCCCEEeCCCCcCCCCccCcccCCCCCCCEEeC-CCCcCCCC--------------------------------------
Q 047285          126 KHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNL-SGAKFAGM--------------------------------------  166 (552)
Q Consensus       126 ~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L-~~~~~~~~--------------------------------------  166 (552)
                      .+++.|+|+++.+.| .+|..++++++|++|+| ++|.+.|.                                      
T Consensus       323 ~~V~~L~Ls~~~L~G-~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s  401 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKG-RVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS  401 (876)
T ss_dssp             SCEEEEECTTTCCEE-EECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred             CCEEEEECccCCCCC-cCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence            579999999999999 59999999999999999 77755443                                      


Q ss_pred             --------------------------------------CccccCCCCCCCEEeccCCCCCCC--ccccC---------Cc
Q 047285          167 --------------------------------------IPLQLGNLSNLQYLDLSGTFLSNY--DLHVD---------SL  197 (552)
Q Consensus       167 --------------------------------------lp~~l~~l~~L~~L~l~~n~l~~~--~~~~~---------~~  197 (552)
                                                            +|..++++++|++|++++|.++..  +....         .+
T Consensus       402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i  481 (876)
T 4ecn_A          402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE  481 (876)
T ss_dssp             HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred             HHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence                                                  566666666677777766666540  00000         01


Q ss_pred             c-ccC--CCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCC-CCC-CCCCcccCC-------CCCceeecCCCC
Q 047285          198 S-WLS--GLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQ-LCH-FPPLLSANF-------SSLKALHLAINN  265 (552)
Q Consensus       198 ~-~l~--~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~-~~~-~~~~~~~~l-------~~L~~L~l~~n~  265 (552)
                      | .+.  ++++|++|++++|.+.+  .+|..+.++++|++|++++|. +++ ..|..+.++       ++|+.|++++|.
T Consensus       482 P~~l~f~~L~~L~~L~Ls~N~l~~--~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~  559 (876)
T 4ecn_A          482 NEELSWSNLKDLTDVELYNCPNMT--QLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN  559 (876)
T ss_dssp             TSCCCGGGCTTCCEEEEESCTTCC--SCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred             ChhhhhccCCCCCEEECcCCCCCc--cChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence            1 133  66666666666666655  455566666666666666666 555 444433333       366666666666


Q ss_pred             CCCCCccccccccCCCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCC-CCEEEccCccceee
Q 047285          266 FDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFND-LEFLSVAWNSLQGT  344 (552)
Q Consensus       266 ~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~l~~n~l~~~  344 (552)
                      +. .+|.. ..+..+++|++|++++|.++ .+| .++.+++|+.|++++|.++ .+|..+..+++ |+.|++++|.++ .
T Consensus       560 L~-~ip~~-~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~  633 (876)
T 4ecn_A          560 LE-EFPAS-ASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-Y  633 (876)
T ss_dssp             CC-BCCCH-HHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-S
T ss_pred             CC-ccCCh-hhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-c
Confidence            66 33220 03556666666666666666 555 5666666666666666666 55656666666 666666666666 5


Q ss_pred             cCccccCCCC--ccCEEeCCCCCCCCCCCchhH---h--hcccCceeecccccCCCCCccccccccccCCCCCCEEEccC
Q 047285          345 ISSVGLENLT--SIETLDLSGNSKLGGKIPTSF---A--RLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSI  417 (552)
Q Consensus       345 ~~~~~l~~l~--~L~~L~l~~n~~l~~~~~~~~---~--~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~  417 (552)
                      +|.. +..++  +|+.|++++|. +.+.+|...   .  .+++|+.++++.+...  .   ++...+..+++|+.|++++
T Consensus       634 lp~~-~~~~~~~~L~~L~Ls~N~-l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~--~---lp~~~~~~l~~L~~L~Ls~  706 (876)
T 4ecn_A          634 IPNI-FNAKSVYVMGSVDFSYNK-IGSEGRNISCSMDDYKGINASTVTLSYNEIQ--K---FPTELFATGSPISTIILSN  706 (876)
T ss_dssp             CCSC-CCTTCSSCEEEEECCSSC-TTTTSSSCSSCTTTCCCCCEEEEECCSSCCC--S---CCHHHHHTTCCCSEEECCS
T ss_pred             Cchh-hhccccCCCCEEECcCCc-CCCccccchhhhccccCCCcCEEEccCCcCC--c---cCHHHHccCCCCCEEECCC
Confidence            5543 44443  36666666666 555444221   1  1224444444433332  1   1111222455677777777


Q ss_pred             CcCcccCchhhcCC--------CCCcEEECCCCcccCCCccccc--CCCCCCEEeCCCCcCCccCcccccCCCCCCeeeC
Q 047285          418 CQISGHLTNQLLQF--------KSLHTLELGHNSLFGPLPPALG--ELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDL  487 (552)
Q Consensus       418 n~~~~~~~~~l~~l--------~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  487 (552)
                      |.++ .+|..+...        ++|+.|+|++|+++ .+|..+.  .+++|+.|++++|.+++ +|..+..+++|+.|+|
T Consensus       707 N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~L  783 (876)
T 4ecn_A          707 NLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGI  783 (876)
T ss_dssp             CCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEEC
T ss_pred             CcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEEC
Confidence            7666 344333322        26777777777766 5666665  67777777777777765 6666667777777777


Q ss_pred             CC------cccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcccccEEecCCCCCC
Q 047285          488 SN------NKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLG  542 (552)
Q Consensus       488 ~~------n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~  542 (552)
                      ++      |++.+.+|. .+.++++|++|+|++|++ +.+|..+.  ++|+.|++++|++.
T Consensus       784 s~N~~ls~N~l~~~ip~-~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~  840 (876)
T 4ecn_A          784 RHQRDAEGNRILRQWPT-GITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNI  840 (876)
T ss_dssp             CCCBCTTCCBCCCCCCT-TGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTC
T ss_pred             CCCCCcccccccccChH-HHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCC
Confidence            54      556666666 566677777777777777 56666544  46777777777665

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=9.1e-41  Score=350.39  Aligned_cols=399  Identities=19%  Similarity=0.161  Sum_probs=270.7

Q ss_pred             cCccccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCc
Q 047285          118 VNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSL  197 (552)
Q Consensus       118 ~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~  197 (552)
                      +|..+.  ++|++|++++|.+++. .|..|..+++|++|++++|++++..|..++++++|++|++++|.++.+|.     
T Consensus        15 ip~~~~--~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~-----   86 (520)
T 2z7x_B           15 VPKDLS--QKTTILNISQNYISEL-WTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISC-----   86 (520)
T ss_dssp             CCCSCC--TTCSEEECCSSCCCCC-CHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEEC-----
T ss_pred             cccccc--ccccEEECCCCccccc-ChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCc-----
Confidence            444443  5666666666666542 34556666666666666666665555566666666666666665554432     


Q ss_pred             cccCCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCC--ceeecCCCCC--CCCCccc
Q 047285          198 SWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSL--KALHLAINNF--DNSLFQY  273 (552)
Q Consensus       198 ~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L--~~L~l~~n~~--~~~~~~~  273 (552)
                        . .+++|++|++++|.+.+. .++..++.+++|++|++++|.+.+   ..+..+++|  +.|++++|.+  .+..+..
T Consensus        87 --~-~l~~L~~L~L~~N~l~~~-~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~  159 (520)
T 2z7x_B           87 --H-PTVNLKHLDLSFNAFDAL-PICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEG  159 (520)
T ss_dssp             --C-CCCCCSEEECCSSCCSSC-CCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTT
T ss_pred             --c-ccCCccEEeccCCccccc-cchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccccccccc
Confidence              1 455666666666665542 233445556666666666665544   234444444  5555555555  3322221


Q ss_pred             cc-----------------------------------------------------cccCCCCccEEeccCccccccCchh
Q 047285          274 GS-----------------------------------------------------WVFGLRNLVFIDLSSNQFQGQIPIG  300 (552)
Q Consensus       274 ~~-----------------------------------------------------~~~~l~~L~~L~L~~n~~~~~~~~~  300 (552)
                      ..                                                     .+..+++|+.|++++|.+.+..+..
T Consensus       160 l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~  239 (520)
T 2z7x_B          160 LQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIR  239 (520)
T ss_dssp             TTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHH
T ss_pred             ccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHH
Confidence            10                                                     1223344444444444444322211


Q ss_pred             hh---cccCCcEEeccCCCCCCCCCccC-----CCCCCCCEEEccCccceeecCccccCCC---CccCEEeCCCCCCCCC
Q 047285          301 LR---NLTSLRHLDLRFNYFNSTTPGWL-----SKFNDLEFLSVAWNSLQGTISSVGLENL---TSIETLDLSGNSKLGG  369 (552)
Q Consensus       301 l~---~l~~L~~L~l~~n~l~~~~~~~l-----~~l~~L~~L~l~~n~l~~~~~~~~l~~l---~~L~~L~l~~n~~l~~  369 (552)
                      +.   ..++|++|++++|.+++.+|..+     ..+++|+.+++++|.+  .+|...+..+   .+|+.|++++|. +..
T Consensus       240 ~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~-l~~  316 (520)
T 2z7x_B          240 ILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTR-MVH  316 (520)
T ss_dssp             HHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSC-CCC
T ss_pred             HHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCc-ccc
Confidence            11   13588999999999998888888     8899999999999888  5553223333   578999999987 543


Q ss_pred             CCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcc--cCchhhcCCCCCcEEECCCCcccCC
Q 047285          370 KIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISG--HLTNQLLQFKSLHTLELGHNSLFGP  447 (552)
Q Consensus       370 ~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~--~~~~~l~~l~~L~~L~L~~n~l~~~  447 (552)
                      ..  .+..+++|+.++++.........     ..+..+++|++|++++|.+++  .+|..+..+++|++|++++|++++.
T Consensus       317 ~~--~~~~l~~L~~L~Ls~n~l~~~~~-----~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~  389 (520)
T 2z7x_B          317 ML--CPSKISPFLHLDFSNNLLTDTVF-----ENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYD  389 (520)
T ss_dssp             CC--CCSSCCCCCEEECCSSCCCTTTT-----TTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCC
T ss_pred             cc--chhhCCcccEEEeECCccChhhh-----hhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcc
Confidence            22  12567778888877665443222     234567799999999999997  5667899999999999999999976


Q ss_pred             Cccc-ccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCC-C
Q 047285          448 LPPA-LGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPN-W  525 (552)
Q Consensus       448 ~~~~-l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~-~  525 (552)
                      +|.. +..+++|++|++++|.+++.+|..+.  ++|++|++++|+++ .+|. .+..+++|++|++++|++. .+|.. +
T Consensus       390 l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~-~~~~l~~L~~L~L~~N~l~-~l~~~~~  464 (520)
T 2z7x_B          390 EKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPK-QVVKLEALQELNVASNQLK-SVPDGIF  464 (520)
T ss_dssp             GGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCG-GGGGCTTCCEEECCSSCCC-CCCTTTT
T ss_pred             cccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccch-hhhcCCCCCEEECCCCcCC-ccCHHHh
Confidence            7764 78899999999999999888887664  79999999999996 7887 5669999999999999999 56665 8


Q ss_pred             cCcccccEEecCCCCCCCCCC
Q 047285          526 VPPFQLETLQLRSCHLGPHFP  546 (552)
Q Consensus       526 ~~~~~L~~L~l~~n~~~~~iP  546 (552)
                      ..+.+|+.|++++|++++..+
T Consensus       465 ~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          465 DRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             TTCTTCCEEECCSSCBCCCHH
T ss_pred             ccCCcccEEECcCCCCcccCC
Confidence            889999999999999998765

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=8.4e-40  Score=337.30  Aligned_cols=367  Identities=24%  Similarity=0.246  Sum_probs=238.7

Q ss_pred             CCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCC-ccccCCCCCCCEEeccCCCCCCCccccCCccccCCCC
Q 047285          126 KHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMI-PLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLY  204 (552)
Q Consensus       126 ~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l-p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~  204 (552)
                      ++|++|++++|.+++. .|..++++++|++|++++|.+.+.+ |..+.++++|++|++++|.++.....     .+..++
T Consensus        30 ~~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~-----~~~~l~  103 (455)
T 3v47_A           30 AHVNYVDLSLNSIAEL-NETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETG-----AFNGLA  103 (455)
T ss_dssp             TTCCEEECCSSCCCEE-CTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTT-----TTTTCT
T ss_pred             CccCEEEecCCccCcC-ChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChh-----hccCcc
Confidence            5666777776666642 4566666667777777666665444 34566666666666666665443211     145555


Q ss_pred             CCCEEeCCCCcCCCCcchhhh--cCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCC
Q 047285          205 MLEHLDLSQMNLSKASDWLLV--TNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRN  282 (552)
Q Consensus       205 ~L~~L~ls~n~~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~  282 (552)
                      +|++|++++|.+.+  ..+..  +..+++|++|++++|.+.+..|..                          .+..+++
T Consensus       104 ~L~~L~L~~n~l~~--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--------------------------~~~~l~~  155 (455)
T 3v47_A          104 NLEVLTLTQCNLDG--AVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS--------------------------FFLNMRR  155 (455)
T ss_dssp             TCCEEECTTSCCBT--HHHHSSTTTTCTTCCEEECCSSBCCSCCCCG--------------------------GGGGCTT
T ss_pred             cCCEEeCCCCCCCc--cccCcccccCcccCCEEECCCCccCccCccc--------------------------ccCCCCc
Confidence            55555555555544  12221  444555555555555554444332                          1334444


Q ss_pred             ccEEeccCccccccCchhhhcc--cCCcEEeccCCCCCCCCCcc--------CCCCCCCCEEEccCccceeecCccccC-
Q 047285          283 LVFIDLSSNQFQGQIPIGLRNL--TSLRHLDLRFNYFNSTTPGW--------LSKFNDLEFLSVAWNSLQGTISSVGLE-  351 (552)
Q Consensus       283 L~~L~L~~n~~~~~~~~~l~~l--~~L~~L~l~~n~l~~~~~~~--------l~~l~~L~~L~l~~n~l~~~~~~~~l~-  351 (552)
                      |++|++++|.+.+..+..+..+  .+|+.|++++|.+.+..+..        +..+++|++|++++|.+++..+.. +. 
T Consensus       156 L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~-~~~  234 (455)
T 3v47_A          156 FHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKR-FFD  234 (455)
T ss_dssp             CCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHH-HHH
T ss_pred             ccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhh-hhc
Confidence            4444444444444444444333  44555555555554433322        224456666666666666544443 22 


Q ss_pred             --CCCccCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhc
Q 047285          352 --NLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLL  429 (552)
Q Consensus       352 --~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~  429 (552)
                        ..++|+.|++++|. ..+.... ...++.+..                ........++|++|++++|.+++..|..+.
T Consensus       235 ~~~~~~L~~L~l~~~~-~~~~~~~-~~~~~~~~~----------------~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  296 (455)
T 3v47_A          235 AIAGTKIQSLILSNSY-NMGSSFG-HTNFKDPDN----------------FTFKGLEASGVKTCDLSKSKIFALLKSVFS  296 (455)
T ss_dssp             HTTTCCEEEEECTTCT-TTSCCTT-CCSSCCCCT----------------TTTGGGTTSCCCEEECCSSCCCEECTTTTT
T ss_pred             cccccceeeEeecccc-ccccccc-hhhhccCcc----------------cccccccccCceEEEecCccccccchhhcc
Confidence              22567777777765 3221100 000000000                000111235899999999999999999999


Q ss_pred             CCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCE
Q 047285          430 QFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTW  509 (552)
Q Consensus       430 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~  509 (552)
                      .+++|++|++++|++++..|..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..|. .+..+++|++
T Consensus       297 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~  375 (455)
T 3v47_A          297 HFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQ-SFLGLPNLKE  375 (455)
T ss_dssp             TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTT-TTTTCTTCCE
T ss_pred             cCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChh-hccccccccE
Confidence            999999999999999988888999999999999999999888888899999999999999999887777 7899999999


Q ss_pred             EEccCCeeeEEcCCCCcCcccccEEecCCCCCCCCCC
Q 047285          510 FSASGNSLILKFNPNWVPPFQLETLQLRSCHLGPHFP  546 (552)
Q Consensus       510 L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~iP  546 (552)
                      |++++|++.+..+..+..+++|+.|++++|++++.+|
T Consensus       376 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          376 LALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             EECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            9999999997666667889999999999999999998

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=2.5e-41  Score=329.92  Aligned_cols=296  Identities=28%  Similarity=0.381  Sum_probs=251.4

Q ss_pred             CCcHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCcc--cCceEecCCC--CcEEEEEcCCCCccCCCCchhhcccCcccc
Q 047285           36 GCIDSEREALLKLKQDLIDPSNRLASWNTGDGDCCK--WAGVFCSNIT--GHVLQLSLQNPFSYLGGDLREVKAGSNYER  111 (552)
Q Consensus        36 ~~~~~~~~~l~~~~~~~~~~~~~~~~W~~~~~~~c~--w~gv~c~~~~--~~v~~L~l~~~~~~~~~~l~~l~~~~~~~~  111 (552)
                      .|.++|++||++||+++.+|. .+++|+. +.+||.  |.||+|+...  ++|+.|++++                    
T Consensus         2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~-~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~--------------------   59 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLGNPT-TLSSWLP-TTDCCNRTWLGVLCDTDTQTYRVNNLDLSG--------------------   59 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-GGTTCCT-TSCTTTTCSTTEEECCSSSCCCEEEEEEEC--------------------
T ss_pred             CCCHHHHHHHHHHHHhcCCcc-cccCCCC-CCCCCcCCCcceEeCCCCCCceEEEEECCC--------------------
Confidence            599999999999999998876 6889986 678998  9999998654  8999999998                    


Q ss_pred             Ccccc--ccCccccCCCCCCEEeCCC-CcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCC
Q 047285          112 SKLGG--KVNPSLVDLKHLIHLDLSG-NDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLS  188 (552)
Q Consensus       112 ~~~~~--~~~~~l~~l~~L~~L~Ls~-n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~  188 (552)
                      +.+.+  .+|+.+.++++|++|++++ |.+.+ .+|..++++++|++|++++|++++.+|..++++++|++|++++|.+.
T Consensus        60 ~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~  138 (313)
T 1ogq_A           60 LNLPKPYPIPSSLANLPYLNFLYIGGINNLVG-PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS  138 (313)
T ss_dssp             CCCSSCEECCGGGGGCTTCSEEEEEEETTEES-CCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred             CCccCCcccChhHhCCCCCCeeeCCCCCcccc-cCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccC
Confidence            47888  8999999999999999995 88888 58999999999999999999999999999999999999999999876


Q ss_pred             C-CccccCCccccCCCCCCCEEeCCCCcCCCCcchhhhcCCCC-CCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCC
Q 047285          189 N-YDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLP-SLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNF  266 (552)
Q Consensus       189 ~-~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~  266 (552)
                      . +|.      .+..+++|++|++++|.+++  .++..+..++ +|++|++++|.+.+..|..+..++ |+.|++++|.+
T Consensus       139 ~~~p~------~~~~l~~L~~L~L~~N~l~~--~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l  209 (313)
T 1ogq_A          139 GTLPP------SISSLPNLVGITFDGNRISG--AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML  209 (313)
T ss_dssp             SCCCG------GGGGCTTCCEEECCSSCCEE--ECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred             CcCCh------HHhcCCCCCeEECcCCcccC--cCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence            3 332      37788899999999998875  4566677777 889999999888888888888776 88888888888


Q ss_pred             CCCCccccccccCCCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecC
Q 047285          267 DNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTIS  346 (552)
Q Consensus       267 ~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~  346 (552)
                      ++..+.   .+..+++|++|++++|.+++.++. +..+++|++|++++|.+++.+|..+..+++|++|++++|+++|.+|
T Consensus       210 ~~~~~~---~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip  285 (313)
T 1ogq_A          210 EGDASV---LFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP  285 (313)
T ss_dssp             EECCGG---GCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred             cCcCCH---HHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCC
Confidence            877776   777888888888888888866654 7778888888888888888888888888888888888888888887


Q ss_pred             ccccCCCCccCEEeCCCCCCCCC
Q 047285          347 SVGLENLTSIETLDLSGNSKLGG  369 (552)
Q Consensus       347 ~~~l~~l~~L~~L~l~~n~~l~~  369 (552)
                      ..  ..+++|+.+++++|+.+.|
T Consensus       286 ~~--~~l~~L~~l~l~~N~~lc~  306 (313)
T 1ogq_A          286 QG--GNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             CS--TTGGGSCGGGTCSSSEEES
T ss_pred             CC--ccccccChHHhcCCCCccC
Confidence            74  6788888888888874444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=5.2e-40  Score=347.17  Aligned_cols=406  Identities=21%  Similarity=0.217  Sum_probs=312.8

Q ss_pred             ccCccccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCC
Q 047285          117 KVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDS  196 (552)
Q Consensus       117 ~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~  196 (552)
                      .+|+.+.  ++|++|++++|.+++. .|..|+.+++|++|++++|++++..|..++++++|++|++++|.++..+..   
T Consensus        19 ~ip~~~~--~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---   92 (549)
T 2z81_A           19 SIPSGLT--AAMKSLDLSFNKITYI-GHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSS---   92 (549)
T ss_dssp             SCCSCCC--TTCCEEECCSSCCCEE-CSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHH---
T ss_pred             cccccCC--CCccEEECcCCccCcc-ChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHH---
Confidence            4566554  7999999999999973 678899999999999999999988888999999999999999988775532   


Q ss_pred             ccccCCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCC-CCCCCCCcccCCCCCceeecCCCCCCCCCccccc
Q 047285          197 LSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQ-LCHFPPLLSANFSSLKALHLAINNFDNSLFQYGS  275 (552)
Q Consensus       197 ~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~  275 (552)
                        .+..+++|++|++++|.+.+. ..+..+.++++|++|++++|. +...++..+.++++|++|++++|.+.+..+.   
T Consensus        93 --~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---  166 (549)
T 2z81_A           93 --WFGPLSSLKYLNLMGNPYQTL-GVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ---  166 (549)
T ss_dssp             --HHTTCTTCCEEECTTCCCSSS-CSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT---
T ss_pred             --HhccCCCCcEEECCCCccccc-chhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChh---
Confidence              278999999999999998864 234567899999999999998 5556667899999999999999999998887   


Q ss_pred             cccCCCCccEEeccCccccccCchh-hhcccCCcEEeccCCCCCCCC--C-ccCCCCCCCCEEEccCccceeecCcc---
Q 047285          276 WVFGLRNLVFIDLSSNQFQGQIPIG-LRNLTSLRHLDLRFNYFNSTT--P-GWLSKFNDLEFLSVAWNSLQGTISSV---  348 (552)
Q Consensus       276 ~~~~l~~L~~L~L~~n~~~~~~~~~-l~~l~~L~~L~l~~n~l~~~~--~-~~l~~l~~L~~L~l~~n~l~~~~~~~---  348 (552)
                      .+..+++|++|++++|.+. .+|.. +..+++|++|++++|.+++..  + .....+++|+.|++++|.+++..+..   
T Consensus       167 ~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~  245 (549)
T 2z81_A          167 SLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLK  245 (549)
T ss_dssp             TTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHG
T ss_pred             hhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHH
Confidence            8889999999999999886 34444 456899999999999998752  1 12234556666666666554321100   


Q ss_pred             ------------------------------ccCC-----------------------------CCccCEEeCCCCCCCCC
Q 047285          349 ------------------------------GLEN-----------------------------LTSIETLDLSGNSKLGG  369 (552)
Q Consensus       349 ------------------------------~l~~-----------------------------l~~L~~L~l~~n~~l~~  369 (552)
                                                    .+..                             .++|+.|++++|. +. 
T Consensus       246 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~-l~-  323 (549)
T 2z81_A          246 LLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VF-  323 (549)
T ss_dssp             GGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC-CC-
T ss_pred             HhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCc-cc-
Confidence                                          0111                             2356666777665 44 


Q ss_pred             CCchhH-hhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCc--hhhcCCCCCcEEECCCCcccC
Q 047285          370 KIPTSF-ARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLT--NQLLQFKSLHTLELGHNSLFG  446 (552)
Q Consensus       370 ~~~~~~-~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~--~~l~~l~~L~~L~L~~n~l~~  446 (552)
                      .+|..+ ..+++|+.++++.+.........  ...+..+++|++|++++|++++..+  ..+..+++|++|++++|+++ 
T Consensus       324 ~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-  400 (549)
T 2z81_A          324 LVPCSFSQHLKSLEFLDLSENLMVEEYLKN--SACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-  400 (549)
T ss_dssp             CCCHHHHHHCTTCCEEECCSSCCCHHHHHH--HTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-
T ss_pred             cCCHHHHhcCccccEEEccCCccccccccc--hhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-
Confidence            566665 46888888777765543211100  1123456789999999998876543  45788899999999999888 


Q ss_pred             CCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCc
Q 047285          447 PLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWV  526 (552)
Q Consensus       447 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~  526 (552)
                      .+|..+..+++|++|++++|.++ .+|..+  .++|++|++++|++++.+     ..+++|++|++++|++. .+|. ..
T Consensus       401 ~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~~~-----~~l~~L~~L~Ls~N~l~-~ip~-~~  470 (549)
T 2z81_A          401 PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSFS-----LFLPRLQELYISRNKLK-TLPD-AS  470 (549)
T ss_dssp             CCCSCCCCCTTCCEEECTTSCCS-CCCTTS--CTTCSEEECCSSCCSCCC-----CCCTTCCEEECCSSCCS-SCCC-GG
T ss_pred             cCChhhcccccccEEECCCCCcc-cccchh--cCCceEEECCCCChhhhc-----ccCChhcEEECCCCccC-cCCC-cc
Confidence            67888888889999999999887 455443  368999999999887632     47899999999999998 6665 56


Q ss_pred             CcccccEEecCCCCCCCCCCcccc
Q 047285          527 PPFQLETLQLRSCHLGPHFPSWLH  550 (552)
Q Consensus       527 ~~~~L~~L~l~~n~~~~~iP~~l~  550 (552)
                      .+++|+.|++++|++++..|+++.
T Consensus       471 ~l~~L~~L~Ls~N~l~~~~~~~~~  494 (549)
T 2z81_A          471 LFPVLLVMKISRNQLKSVPDGIFD  494 (549)
T ss_dssp             GCTTCCEEECCSSCCCCCCTTGGG
T ss_pred             cCccCCEEecCCCccCCcCHHHHh
Confidence            788999999999999988887665

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=3.5e-39  Score=332.63  Aligned_cols=384  Identities=22%  Similarity=0.217  Sum_probs=268.4

Q ss_pred             CCcccCc--eEecCCC--------CcEEEEEcCCCCccCCCCchhhcccCccccCccccccCccccCCCCCCEEeCCCCc
Q 047285           68 DCCKWAG--VFCSNIT--------GHVLQLSLQNPFSYLGGDLREVKAGSNYERSKLGGKVNPSLVDLKHLIHLDLSGND  137 (552)
Q Consensus        68 ~~c~w~g--v~c~~~~--------~~v~~L~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~  137 (552)
                      ..|.|.+  +.|+...        .+++.|++++                    +.+.+..|..+.++++|++|++++|.
T Consensus         6 ~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~--------------------n~i~~~~~~~~~~l~~L~~L~L~~n~   65 (455)
T 3v47_A            6 SECSVIGYNAICINRGLHQVPELPAHVNYVDLSL--------------------NSIAELNETSFSRLQDLQFLKVEQQT   65 (455)
T ss_dssp             -CCEEETTEEECCSSCCSSCCCCCTTCCEEECCS--------------------SCCCEECTTTTSSCTTCCEEECCCCS
T ss_pred             ceeEEEccccCcCCCCcccCCCCCCccCEEEecC--------------------CccCcCChhHhccCccccEEECcCCc
Confidence            4455555  7776422        4678888877                    47888778899999999999999999


Q ss_pred             CCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCCCCCCEEeCCCCcCC
Q 047285          138 FEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLS  217 (552)
Q Consensus       138 ~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~  217 (552)
                      +.+.-.+..|+.+++|++|++++|++++..|..++++++|++|++++|.++......   ..+..+++|++|++++|.+.
T Consensus        66 ~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~~~l~~L~~L~L~~n~l~  142 (455)
T 3v47_A           66 PGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSG---NFFKPLTSLEMLVLRDNNIK  142 (455)
T ss_dssp             TTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHS---STTTTCTTCCEEECCSSBCC
T ss_pred             ccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCc---ccccCcccCCEEECCCCccC
Confidence            876323677999999999999999999888999999999999999999876521111   12778999999999999998


Q ss_pred             CCcchhhh-cCCCCCCCEEEcCCCCCCCCCCCcccCC--CCCceeecCCCCCCCCCccccc-----cccCCCCccEEecc
Q 047285          218 KASDWLLV-TNSLPSLKVLKLTKCQLCHFPPLLSANF--SSLKALHLAINNFDNSLFQYGS-----WVFGLRNLVFIDLS  289 (552)
Q Consensus       218 ~~~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~l--~~L~~L~l~~n~~~~~~~~~~~-----~~~~l~~L~~L~L~  289 (552)
                      +.  .+.. +..+++|++|++++|.+.+..+..+..+  .+|+.|++++|.+.+..+....     .+..+++|++|+++
T Consensus       143 ~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls  220 (455)
T 3v47_A          143 KI--QPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLS  220 (455)
T ss_dssp             SC--CCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECT
T ss_pred             cc--CcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecC
Confidence            74  2333 6789999999999999999999888876  6899999999998876544211     13356899999999


Q ss_pred             CccccccCchhhhcc---cCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccC--CCCccCEEeCCCC
Q 047285          290 SNQFQGQIPIGLRNL---TSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLE--NLTSIETLDLSGN  364 (552)
Q Consensus       290 ~n~~~~~~~~~l~~l---~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~--~l~~L~~L~l~~n  364 (552)
                      +|.+.+..|..+...   ++|+.|++++|...+..... ..++.+             .... +.  ..++|+.|++++|
T Consensus       221 ~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~-------------~~~~-~~~~~~~~L~~L~l~~n  285 (455)
T 3v47_A          221 GNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH-TNFKDP-------------DNFT-FKGLEASGVKTCDLSKS  285 (455)
T ss_dssp             TSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTC-CSSCCC-------------CTTT-TGGGTTSCCCEEECCSS
T ss_pred             CCcccccchhhhhccccccceeeEeeccccccccccch-hhhccC-------------cccc-cccccccCceEEEecCc
Confidence            999998888777655   88999999998765532110 001000             0000 11  1245666666666


Q ss_pred             CCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcc
Q 047285          365 SKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSL  444 (552)
Q Consensus       365 ~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l  444 (552)
                      . +.+..|..+..++                             +|++|++++|.+++..+..+..+++|++|++++|++
T Consensus       286 ~-l~~~~~~~~~~l~-----------------------------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l  335 (455)
T 3v47_A          286 K-IFALLKSVFSHFT-----------------------------DLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL  335 (455)
T ss_dssp             C-CCEECTTTTTTCT-----------------------------TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             c-ccccchhhcccCC-----------------------------CCCEEECCCCcccccChhHhcCcccCCEEECCCCcc
Confidence            5 5555554444443                             566666666666655555666666666666666666


Q ss_pred             cCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcC
Q 047285          445 FGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFN  522 (552)
Q Consensus       445 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~  522 (552)
                      ++..|..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..+. .+..+++|++|++++|++.+.+|
T Consensus       336 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          336 GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDG-IFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             CEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT-TTTTCTTCCEEECCSSCBCCCTT
T ss_pred             CCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHh-HhccCCcccEEEccCCCcccCCC
Confidence            655555666666666666666666655566666666666666666666543332 45566666666666666666655

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=5.8e-40  Score=344.29  Aligned_cols=383  Identities=20%  Similarity=0.204  Sum_probs=301.3

Q ss_pred             CEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCCCCCCE
Q 047285          129 IHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEH  208 (552)
Q Consensus       129 ~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~  208 (552)
                      ++|++++|.++  .+|..+.  ++|++|++++|++++..|..+.++++|++|++++|.++.++..     .+..+++|++
T Consensus         3 ~~l~ls~n~l~--~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-----~~~~l~~L~~   73 (520)
T 2z7x_B            3 FLVDRSKNGLI--HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDIS-----VFKFNQELEY   73 (520)
T ss_dssp             CEEECTTSCCS--SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGG-----GGTTCTTCCE
T ss_pred             ceEecCCCCcc--ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChH-----HhhcccCCCE
Confidence            68999999999  5788776  8999999999999988888999999999999999998765322     3889999999


Q ss_pred             EeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCC-CCCcccCCCCCceeecCCCCCCCCCccccccccCCCCc--cE
Q 047285          209 LDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHF-PPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNL--VF  285 (552)
Q Consensus       209 L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L--~~  285 (552)
                      |++++|.++..   +..  .+++|++|++++|.+.+. .|..++++++|++|++++|.+.+.      .+..+++|  ++
T Consensus        74 L~Ls~N~l~~l---p~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~------~~~~l~~L~L~~  142 (520)
T 2z7x_B           74 LDLSHNKLVKI---SCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS------SVLPIAHLNISK  142 (520)
T ss_dssp             EECCSSCCCEE---ECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG------GGGGGTTSCEEE
T ss_pred             EecCCCceeec---Ccc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh------hccccccceeeE
Confidence            99999999864   333  799999999999999984 678999999999999999998763      45566777  99


Q ss_pred             EeccCccc--cccCchhhhc--------------------------ccCCcEEeccCCC-------CCCCCCccCCCC--
Q 047285          286 IDLSSNQF--QGQIPIGLRN--------------------------LTSLRHLDLRFNY-------FNSTTPGWLSKF--  328 (552)
Q Consensus       286 L~L~~n~~--~~~~~~~l~~--------------------------l~~L~~L~l~~n~-------l~~~~~~~l~~l--  328 (552)
                      |++++|.+  .+..|..+..                          +++|+.+++++|.       +.+.++ .+..+  
T Consensus       143 L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~  221 (520)
T 2z7x_B          143 VLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPK  221 (520)
T ss_dssp             EEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTT
T ss_pred             EEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccc
Confidence            99999988  6666666655                          3444455554443       111111 12222  


Q ss_pred             -------------------------CCCCEEEccCccceeecCcccc-----CCCCccCEEeCCCCCCCCCCCc-hhHhh
Q 047285          329 -------------------------NDLEFLSVAWNSLQGTISSVGL-----ENLTSIETLDLSGNSKLGGKIP-TSFAR  377 (552)
Q Consensus       329 -------------------------~~L~~L~l~~n~l~~~~~~~~l-----~~l~~L~~L~l~~n~~l~~~~~-~~~~~  377 (552)
                                               ++|++|++++|.++|.+|.. +     ..+++|+.+++++|. +  .+| ..+..
T Consensus       222 L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~-~~~~~~~~l~~L~~l~l~~n~-~--~~p~~~~~~  297 (520)
T 2z7x_B          222 LSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFR-DFDYSGTSLKALSIHQVVSDV-F--GFPQSYIYE  297 (520)
T ss_dssp             CCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCC-CCCCCSCCCCEEEEEEEEECC-C--CSCTHHHHH
T ss_pred             hhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccc-hhhcccccCceeEeccccccc-e--ecchhhhhc
Confidence                                     35666666666666666665 4     667777777777776 4  445 44544


Q ss_pred             c---ccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccC--CCcccc
Q 047285          378 L---CKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFG--PLPPAL  452 (552)
Q Consensus       378 l---~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~l  452 (552)
                      +   .+|+.++++.........       ...+++|++|++++|.+++..|..+..+++|++|++++|++++  .+|..+
T Consensus       298 ~~~~~~L~~L~l~~n~l~~~~~-------~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~  370 (520)
T 2z7x_B          298 IFSNMNIKNFTVSGTRMVHMLC-------PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMT  370 (520)
T ss_dssp             HHHTCCCSEEEEESSCCCCCCC-------CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHH
T ss_pred             ccccCceeEEEcCCCccccccc-------hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHH
Confidence            4   446666665544322110       1467799999999999999899999999999999999999986  567789


Q ss_pred             cCCCCCCEEeCCCCcCCccCccc-ccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcccc
Q 047285          453 GELSSLKKLDLSNNMLNGFIPLS-LGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQL  531 (552)
Q Consensus       453 ~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L  531 (552)
                      ..+++|++|++++|.+++.+|.. +..+++|++|++++|++++.+|. .+.  ++|++|++++|++. .+|..+..+++|
T Consensus       371 ~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L  446 (520)
T 2z7x_B          371 TQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFR-CLP--PRIKVLDLHSNKIK-SIPKQVVKLEAL  446 (520)
T ss_dssp             TTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGG-SCC--TTCCEEECCSSCCC-CCCGGGGGCTTC
T ss_pred             hhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhh-hhc--ccCCEEECCCCccc-ccchhhhcCCCC
Confidence            99999999999999999867764 78899999999999999887765 332  79999999999998 788888899999


Q ss_pred             cEEecCCCCCCCCCCcc
Q 047285          532 ETLQLRSCHLGPHFPSW  548 (552)
Q Consensus       532 ~~L~l~~n~~~~~iP~~  548 (552)
                      +.|++++|+++ .+|..
T Consensus       447 ~~L~L~~N~l~-~l~~~  462 (520)
T 2z7x_B          447 QELNVASNQLK-SVPDG  462 (520)
T ss_dssp             CEEECCSSCCC-CCCTT
T ss_pred             CEEECCCCcCC-ccCHH
Confidence            99999999999 78875

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=9e-39  Score=338.06  Aligned_cols=398  Identities=19%  Similarity=0.147  Sum_probs=261.3

Q ss_pred             cCccccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCc
Q 047285          118 VNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSL  197 (552)
Q Consensus       118 ~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~  197 (552)
                      +|..+.  ++|++|++++|.+++. .|..|+.+++|++|++++|++++..|..++++++|++|++++|.++.+|..    
T Consensus        46 ip~~~~--~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~----  118 (562)
T 3a79_B           46 VPKDLP--PRTKALSLSQNSISEL-RMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC----  118 (562)
T ss_dssp             CCTTSC--TTCCEEECCSSCCCCC-CGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC----
T ss_pred             CCCCCC--CCcCEEECCCCCcccc-ChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc----
Confidence            444332  6677777777776652 345666777777777777777665566667777777777777766654421    


Q ss_pred             cccCCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCC--ceeecCCCCC--CCCCccc
Q 047285          198 SWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSL--KALHLAINNF--DNSLFQY  273 (552)
Q Consensus       198 ~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L--~~L~l~~n~~--~~~~~~~  273 (552)
                          .+++|++|++++|.+.+. ..+..+.++++|++|++++|.+.+.   .+..+++|  +.|++++|.+  .+..+..
T Consensus       119 ----~l~~L~~L~Ls~N~l~~l-~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~  190 (562)
T 3a79_B          119 ----PMASLRHLDLSFNDFDVL-PVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETES  190 (562)
T ss_dssp             ----CCTTCSEEECCSSCCSBC-CCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCE
T ss_pred             ----ccccCCEEECCCCCcccc-CchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCccc
Confidence                566677777777766553 1234556666777777777666543   23334444  6666666666  4433331


Q ss_pred             cc-----------------------cccCCCCccEEeccCcc----------------------------cccc----Cc
Q 047285          274 GS-----------------------WVFGLRNLVFIDLSSNQ----------------------------FQGQ----IP  298 (552)
Q Consensus       274 ~~-----------------------~~~~l~~L~~L~L~~n~----------------------------~~~~----~~  298 (552)
                      ..                       .+..+++|+.+++++|.                            +.+.    ++
T Consensus       191 l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~  270 (562)
T 3a79_B          191 LQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLF  270 (562)
T ss_dssp             EEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHH
T ss_pred             ccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHH
Confidence            11                       12234566666666653                            1111    11


Q ss_pred             hhhhcccCCcEEeccCCCCCCCCCccC-----CCCCCCCEEEccCccceeecCccccCC---CCccCEEeCCCCCCCCCC
Q 047285          299 IGLRNLTSLRHLDLRFNYFNSTTPGWL-----SKFNDLEFLSVAWNSLQGTISSVGLEN---LTSIETLDLSGNSKLGGK  370 (552)
Q Consensus       299 ~~l~~l~~L~~L~l~~n~l~~~~~~~l-----~~l~~L~~L~l~~n~l~~~~~~~~l~~---l~~L~~L~l~~n~~l~~~  370 (552)
                      .. ...++|++|++++|.+++.+|..+     .+++.|+.+++..+.+  .+|...+..   ..+|+.|++++|. +...
T Consensus       271 ~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~-~~~~  346 (562)
T 3a79_B          271 QF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTP-FIHM  346 (562)
T ss_dssp             HH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSC-CCCC
T ss_pred             Hh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCC-cccc
Confidence            11 122488999999999998888776     5555555555555544  233211111   1457777777776 3321


Q ss_pred             CchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCccc--CchhhcCCCCCcEEECCCCcccCCC
Q 047285          371 IPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGH--LTNQLLQFKSLHTLELGHNSLFGPL  448 (552)
Q Consensus       371 ~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~--~~~~l~~l~~L~~L~L~~n~l~~~~  448 (552)
                      .  ....+++|+.++++........     +..+..+++|++|++++|.+++.  +|..+..+++|+.|++++|++++.+
T Consensus       347 ~--~~~~l~~L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~  419 (562)
T 3a79_B          347 V--CPPSPSSFTFLNFTQNVFTDSV-----FQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHA  419 (562)
T ss_dssp             C--CCSSCCCCCEEECCSSCCCTTT-----TTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCC
T ss_pred             c--CccCCCCceEEECCCCccccch-----hhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCcc
Confidence            1  1145666666666655443211     12234567899999999999873  4567889999999999999999756


Q ss_pred             cc-cccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCC-Cc
Q 047285          449 PP-ALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPN-WV  526 (552)
Q Consensus       449 ~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~-~~  526 (552)
                      |. .+..+++|++|++++|.+++.+|..+.  ++|++|++++|+++ .+|. .+..+++|++|++++|+++ .+|.. +.
T Consensus       420 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~-~~~~l~~L~~L~L~~N~l~-~l~~~~~~  494 (562)
T 3a79_B          420 YDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPK-DVTHLQALQELNVASNQLK-SVPDGVFD  494 (562)
T ss_dssp             SSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCT-TTTSSCCCSEEECCSSCCC-CCCTTSTT
T ss_pred             ChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccCh-hhcCCCCCCEEECCCCCCC-CCCHHHHh
Confidence            65 478899999999999999887776654  78999999999995 6777 4559999999999999998 56665 88


Q ss_pred             CcccccEEecCCCCCCCCCC
Q 047285          527 PPFQLETLQLRSCHLGPHFP  546 (552)
Q Consensus       527 ~~~~L~~L~l~~n~~~~~iP  546 (552)
                      .+++|+.|++++|++.+..|
T Consensus       495 ~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          495 RLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             TCTTCCCEECCSCCBCCCHH
T ss_pred             cCCCCCEEEecCCCcCCCcc
Confidence            88999999999999998766

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=1.9e-37  Score=333.54  Aligned_cols=415  Identities=22%  Similarity=0.175  Sum_probs=291.7

Q ss_pred             CccccccCccccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCc
Q 047285          112 SKLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYD  191 (552)
Q Consensus       112 ~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~  191 (552)
                      |.+++..+.+|.++++|++|+|++|.++++ .|+.|+++++|++|+|++|++++..+..|.++++|++|++++|.++.++
T Consensus        62 N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i-~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~  140 (635)
T 4g8a_A           62 NPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE  140 (635)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCST
T ss_pred             CCCCCCCHHHHhCCCCCCEEECCCCcCCCc-ChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCC
Confidence            578777677899999999999999999963 4567999999999999999999766677899999999999999988776


Q ss_pred             cccCCccccCCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCc----eeecCCCCCC
Q 047285          192 LHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLK----ALHLAINNFD  267 (552)
Q Consensus       192 ~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~----~L~l~~n~~~  267 (552)
                      ...     ++++++|++|++++|.+... ..+..+..+++|++|++++|.+.+..+..+..+.+++    .++++.|.+.
T Consensus       141 ~~~-----~~~L~~L~~L~Ls~N~l~~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~  214 (635)
T 4g8a_A          141 NFP-----IGHLKTLKELNVAHNLIQSF-KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN  214 (635)
T ss_dssp             TCC-----CTTCTTCCEEECCSSCCCCC-CCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCC
T ss_pred             hhh-----hhcCcccCeeccccCccccC-CCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCccc
Confidence            432     78899999999999998764 3566778899999999999999888776665544433    3444444433


Q ss_pred             CCCcccc-------------------------------------------------------------------------
Q 047285          268 NSLFQYG-------------------------------------------------------------------------  274 (552)
Q Consensus       268 ~~~~~~~-------------------------------------------------------------------------  274 (552)
                      ...+...                                                                         
T Consensus       215 ~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~  294 (635)
T 4g8a_A          215 FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYY  294 (635)
T ss_dssp             EECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSC
T ss_pred             ccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhccc
Confidence            2111100                                                                         


Q ss_pred             -----ccccCCCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccc
Q 047285          275 -----SWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVG  349 (552)
Q Consensus       275 -----~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~  349 (552)
                           ..+....+++.+.+.++.+...  ..+.....++.|++.+|.+.+..+.   .++.|+.+.+..|.......   
T Consensus       295 ~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~~~---  366 (635)
T 4g8a_A          295 LDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNAFS---  366 (635)
T ss_dssp             EEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCCBCC---
T ss_pred             ccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCcc---cchhhhhcccccccCCCCcc---
Confidence                 0011112233333333333211  1233445566666666655443322   23344444444444332111   


Q ss_pred             cCCCCccCEEeCCCCCCCC--CCCchhHhhcccCceeecccccCCC-----C--------------CccccccccccCCC
Q 047285          350 LENLTSIETLDLSGNSKLG--GKIPTSFARLCKLTSVDLSLIDLSQ-----D--------------FSQVLDTFSSCGAY  408 (552)
Q Consensus       350 l~~l~~L~~L~l~~n~~l~--~~~~~~~~~l~~L~~l~l~~~~~~~-----~--------------~~~~~~~~~~~~~~  408 (552)
                      ...+++|+.+++++|. +.  +..+..+..+.+|+.+++.......     .              .........+..+.
T Consensus       367 ~~~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~  445 (635)
T 4g8a_A          367 EVDLPSLEFLDLSRNG-LSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR  445 (635)
T ss_dssp             CCBCTTCCEEECCSSC-CBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCT
T ss_pred             cccccccccchhhccc-cccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccc
Confidence            2345566666666654 32  2233444444444444433221110     0              00001122345677


Q ss_pred             CCCEEEccCCcCcccCchhhcCCCCCcEEECCCCccc-CCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeC
Q 047285          409 ALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLF-GPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDL  487 (552)
Q Consensus       409 ~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  487 (552)
                      +++.++++.|.+.+..+..+..+++|+.|++++|++. +..|..+..+++|++|++++|++++..|..+.++++|++|+|
T Consensus       446 ~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~L  525 (635)
T 4g8a_A          446 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM  525 (635)
T ss_dssp             TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEEC
Confidence            8999999999999888888999999999999999854 456788999999999999999999888999999999999999


Q ss_pred             CCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCc-ccccEEecCCCCCCC
Q 047285          488 SNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPP-FQLETLQLRSCHLGP  543 (552)
Q Consensus       488 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~-~~L~~L~l~~n~~~~  543 (552)
                      ++|++++..+. .+.++++|++|+|++|++++..|..+..+ .+|+.|++++|+++-
T Consensus       526 s~N~l~~l~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C  581 (635)
T 4g8a_A          526 SHNNFFSLDTF-PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  581 (635)
T ss_dssp             TTSCCCBCCCG-GGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred             CCCcCCCCChh-HHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence            99999877676 79999999999999999999999888887 689999999999874

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.1e-37  Score=319.23  Aligned_cols=355  Identities=21%  Similarity=0.198  Sum_probs=280.5

Q ss_pred             cccCccccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccC
Q 047285          116 GKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVD  195 (552)
Q Consensus       116 ~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~  195 (552)
                      +..+..++++++|++|++++|.+++  +| .++.+++|++|++++|++++ +|  ++++++|++|++++|.++.++    
T Consensus        32 ~~~~~~~~~l~~L~~L~Ls~n~l~~--~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~~----  101 (457)
T 3bz5_A           32 ATDTISEEQLATLTSLDCHNSSITD--MT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNLD----  101 (457)
T ss_dssp             TTSEEEHHHHTTCCEEECCSSCCCC--CT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC----
T ss_pred             cccccChhHcCCCCEEEccCCCccc--Ch-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCceee----
Confidence            3444568899999999999999995  46 68999999999999999986 44  899999999999999988753    


Q ss_pred             CccccCCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccc
Q 047285          196 SLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGS  275 (552)
Q Consensus       196 ~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~  275 (552)
                          +..+++|++|++++|.+++.+     +..+++|++|++++|.+++..   +..+++|++|++++|...+.+     
T Consensus       102 ----~~~l~~L~~L~L~~N~l~~l~-----~~~l~~L~~L~l~~N~l~~l~---l~~l~~L~~L~l~~n~~~~~~-----  164 (457)
T 3bz5_A          102 ----VTPLTKLTYLNCDTNKLTKLD-----VSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITKL-----  164 (457)
T ss_dssp             ----CTTCTTCCEEECCSSCCSCCC-----CTTCTTCCEEECTTSCCSCCC---CTTCTTCCEEECTTCSCCCCC-----
T ss_pred             ----cCCCCcCCEEECCCCcCCeec-----CCCCCcCCEEECCCCccceec---cccCCcCCEEECCCCCccccc-----
Confidence                788999999999999998742     788999999999999999852   788999999999999766554     


Q ss_pred             cccCCCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCc
Q 047285          276 WVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTS  355 (552)
Q Consensus       276 ~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~  355 (552)
                      .+..+++|++|++++|.+++ +|  +..+++|++|++++|.+++.   .+..+++|++|++++|++++ +|   +..+++
T Consensus       165 ~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip---~~~l~~  234 (457)
T 3bz5_A          165 DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID---VTPLTQ  234 (457)
T ss_dssp             CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC---CTTCTT
T ss_pred             ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC---ccccCC
Confidence            35678999999999999986 45  78899999999999999886   37889999999999999996 55   778999


Q ss_pred             cCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCc
Q 047285          356 IETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLH  435 (552)
Q Consensus       356 L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~  435 (552)
                      |+.|++++|. +++..+   ..+++|+.+++..                   .+|+.|++++|.+.+.+|  +..+++|+
T Consensus       235 L~~L~l~~N~-l~~~~~---~~l~~L~~L~l~~-------------------n~L~~L~l~~n~~~~~~~--~~~l~~L~  289 (457)
T 3bz5_A          235 LTYFDCSVNP-LTELDV---STLSKLTTLHCIQ-------------------TDLLEIDLTHNTQLIYFQ--AEGCRKIK  289 (457)
T ss_dssp             CSEEECCSSC-CSCCCC---TTCTTCCEEECTT-------------------CCCSCCCCTTCTTCCEEE--CTTCTTCC
T ss_pred             CCEEEeeCCc-CCCcCH---HHCCCCCEEeccC-------------------CCCCEEECCCCccCCccc--ccccccCC
Confidence            9999999998 877543   4556666665542                   256667777777666665  35667777


Q ss_pred             EEECCCCcccCCCcc--------cccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCC
Q 047285          436 TLELGHNSLFGPLPP--------ALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKL  507 (552)
Q Consensus       436 ~L~L~~n~l~~~~~~--------~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L  507 (552)
                      .|++++|...+.+|.        .+..+++|++|++++|++++ ++  +.++++|+.|++++|++++ +        +.|
T Consensus       290 ~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~~-l--------~~L  357 (457)
T 3bz5_A          290 ELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQD-F--------SSV  357 (457)
T ss_dssp             CCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC-CC--CTTCTTCSEEECCSSCCCB-C--------TTG
T ss_pred             EEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccc-cc--cccCCcCcEEECCCCCCCC-c--------ccc
Confidence            777777766554443        24455778888888888876 33  7778888888888888865 2        344


Q ss_pred             CEEEccCCeeeEEcCCCCcCcccccEEecCCCCCCCCCCccc
Q 047285          508 TWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLGPHFPSWL  549 (552)
Q Consensus       508 ~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~iP~~l  549 (552)
                      ..|++++|.+.|.     ..+..|..+++++|+++|.||..+
T Consensus       358 ~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~  394 (457)
T 3bz5_A          358 GKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDL  394 (457)
T ss_dssp             GGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTC
T ss_pred             ccccccCCcEEec-----ceeeecCccccccCcEEEEcChhH
Confidence            5556777777765     244567777888888888887654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=8.2e-37  Score=315.33  Aligned_cols=356  Identities=26%  Similarity=0.344  Sum_probs=277.0

Q ss_pred             cccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCcccc
Q 047285          121 SLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWL  200 (552)
Q Consensus       121 ~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l  200 (552)
                      .+..+++|++|++++|.+++  +|. ++.+++|++|++++|.+.+..|  ++++++|++|++++|.++.++       .+
T Consensus        63 ~~~~l~~L~~L~Ls~n~l~~--~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~-------~~  130 (466)
T 1o6v_A           63 GVEYLNNLTQINFSNNQLTD--ITP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDID-------PL  130 (466)
T ss_dssp             TGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG-------GG
T ss_pred             chhhhcCCCEEECCCCccCC--chh-hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCCh-------HH
Confidence            37889999999999999985  455 8999999999999999986544  999999999999999887654       27


Q ss_pred             CCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCC
Q 047285          201 SGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGL  280 (552)
Q Consensus       201 ~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l  280 (552)
                      ..+++|++|++++|.+...+    .+..+++|++|++. +.+.+..+  +.++++|+.|++++|.+.+..     .+..+
T Consensus       131 ~~l~~L~~L~l~~n~l~~~~----~~~~l~~L~~L~l~-~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~-----~l~~l  198 (466)
T 1o6v_A          131 KNLTNLNRLELSSNTISDIS----ALSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSNKVSDIS-----VLAKL  198 (466)
T ss_dssp             TTCTTCSEEEEEEEEECCCG----GGTTCTTCSEEEEE-ESCCCCGG--GTTCTTCCEEECCSSCCCCCG-----GGGGC
T ss_pred             cCCCCCCEEECCCCccCCCh----hhccCCcccEeecC-CcccCchh--hccCCCCCEEECcCCcCCCCh-----hhccC
Confidence            88999999999999988743    36789999999996 44544433  788899999999999877642     46778


Q ss_pred             CCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEe
Q 047285          281 RNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLD  360 (552)
Q Consensus       281 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~  360 (552)
                      ++|++|++++|.+.+..+  ++.+++|++|++++|.+++.  ..+..+++|++|++++|.+.+..+   +..+++|+.|+
T Consensus       199 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~  271 (466)
T 1o6v_A          199 TNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELK  271 (466)
T ss_dssp             TTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG---GTTCTTCSEEE
T ss_pred             CCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh---hhcCCCCCEEE
Confidence            899999999998886554  77789999999999988764  357788899999999998875433   67888999999


Q ss_pred             CCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECC
Q 047285          361 LSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELG  440 (552)
Q Consensus       361 l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~  440 (552)
                      +++|. +++..+  +..+                             ++|++|++++|.+++..+  +..+++|+.|+++
T Consensus       272 l~~n~-l~~~~~--~~~l-----------------------------~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~  317 (466)
T 1o6v_A          272 LGANQ-ISNISP--LAGL-----------------------------TALTNLELNENQLEDISP--ISNLKNLTYLTLY  317 (466)
T ss_dssp             CCSSC-CCCCGG--GTTC-----------------------------TTCSEEECCSSCCSCCGG--GGGCTTCSEEECC
T ss_pred             CCCCc-cCcccc--ccCC-----------------------------CccCeEEcCCCcccCchh--hcCCCCCCEEECc
Confidence            99987 654332  3333                             478888888888886554  7788889999999


Q ss_pred             CCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEE
Q 047285          441 HNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILK  520 (552)
Q Consensus       441 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~  520 (552)
                      +|++++..|  +..+++|++|++++|.+++.  ..+..+++|+.|++++|++++..|   +..+++|++|++++|++++.
T Consensus       318 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~~~~~  390 (466)
T 1o6v_A          318 FNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP---LANLTRITQLGLNDQAWTNA  390 (466)
T ss_dssp             SSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG---GTTCTTCCEEECCCEEEECC
T ss_pred             CCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch---hhcCCCCCEEeccCCcccCC
Confidence            998886554  67888999999999988854  467788899999999998877665   67888899999999888762


Q ss_pred             ---------cCCCCcCcccccEEecCCCCCCC----CCCccccc
Q 047285          521 ---------FNPNWVPPFQLETLQLRSCHLGP----HFPSWLHS  551 (552)
Q Consensus       521 ---------~~~~~~~~~~L~~L~l~~n~~~~----~iP~~l~~  551 (552)
                               +|..+   .++....+....+++    ..|+|+++
T Consensus       391 p~~~~~~~~ip~~~---~~~~~~~~~~~~is~~g~~~~~~~~w~  431 (466)
T 1o6v_A          391 PVNYKANVSIPNTV---KNVTGALIAPATISDGGSYTEPDITWN  431 (466)
T ss_dssp             CBCCCSEEEEECCC---BCTTSCBCCCSEESTTCEEETTEEEEE
T ss_pred             chhhcccceecccc---cccCCCeecCceecCCcEEeCCceEEC
Confidence                     23222   234444555555554    46766653

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=5.9e-37  Score=316.42  Aligned_cols=347  Identities=27%  Similarity=0.342  Sum_probs=291.8

Q ss_pred             cCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCC
Q 047285          123 VDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSG  202 (552)
Q Consensus       123 ~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~  202 (552)
                      ..+++++.|+++++.+.  .+|. +..+++|++|++++|.+++. |. +.++++|++|++++|.+...+.       +..
T Consensus        43 ~~l~~l~~L~l~~~~i~--~l~~-~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~-------~~~  110 (466)
T 1o6v_A           43 TDLDQVTTLQADRLGIK--SIDG-VEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADITP-------LAN  110 (466)
T ss_dssp             HHHHTCCEEECCSSCCC--CCTT-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG-------GTT
T ss_pred             hHhccccEEecCCCCCc--cCcc-hhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccChh-------hcC
Confidence            45789999999999998  4564 78899999999999999865 44 9999999999999998876542       789


Q ss_pred             CCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCC
Q 047285          203 LYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRN  282 (552)
Q Consensus       203 l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~  282 (552)
                      +++|++|++++|.+.+.+.    +..+++|++|++++|.+.+..  .+..+++|+.|+++ +.+.+..     .+..+++
T Consensus       111 l~~L~~L~L~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~-~~~~~~~-----~~~~l~~  178 (466)
T 1o6v_A          111 LTNLTGLTLFNNQITDIDP----LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFG-NQVTDLK-----PLANLTT  178 (466)
T ss_dssp             CTTCCEEECCSSCCCCCGG----GTTCTTCSEEEEEEEEECCCG--GGTTCTTCSEEEEE-ESCCCCG-----GGTTCTT
T ss_pred             CCCCCEEECCCCCCCCChH----HcCCCCCCEEECCCCccCCCh--hhccCCcccEeecC-CcccCch-----hhccCCC
Confidence            9999999999999987532    788999999999999988754  47889999999996 4443322     4678899


Q ss_pred             ccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCC
Q 047285          283 LVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLS  362 (552)
Q Consensus       283 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~  362 (552)
                      |++|++++|.+.+.  ..+..+++|++|++++|.+.+..+  +..+++|++|++++|.+++ ++  .+..+++|+.|+++
T Consensus       179 L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~l~  251 (466)
T 1o6v_A          179 LERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-IG--TLASLTNLTDLDLA  251 (466)
T ss_dssp             CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CG--GGGGCTTCSEEECC
T ss_pred             CCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc-ch--hhhcCCCCCEEECC
Confidence            99999999998753  358889999999999999887665  6778999999999998874 33  27788999999999


Q ss_pred             CCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCC
Q 047285          363 GNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHN  442 (552)
Q Consensus       363 ~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n  442 (552)
                      +|. +.+..+  +.                             .+++|++|++++|.+++..+  +..+++|+.|++++|
T Consensus       252 ~n~-l~~~~~--~~-----------------------------~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n  297 (466)
T 1o6v_A          252 NNQ-ISNLAP--LS-----------------------------GLTKLTELKLGANQISNISP--LAGLTALTNLELNEN  297 (466)
T ss_dssp             SSC-CCCCGG--GT-----------------------------TCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSS
T ss_pred             CCc-cccchh--hh-----------------------------cCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCC
Confidence            997 654433  33                             33489999999999997654  888999999999999


Q ss_pred             cccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcC
Q 047285          443 SLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFN  522 (552)
Q Consensus       443 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~  522 (552)
                      ++.+..+  +..+++|++|++++|.+++..|  +..+++|++|++++|++++. +  .+..+++|++|++++|++.+..|
T Consensus       298 ~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~--~l~~l~~L~~L~l~~n~l~~~~~  370 (466)
T 1o6v_A          298 QLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV-S--SLANLTNINWLSAGHNQISDLTP  370 (466)
T ss_dssp             CCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC-G--GGTTCTTCCEEECCSSCCCBCGG
T ss_pred             cccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc-h--hhccCCCCCEEeCCCCccCccch
Confidence            9986433  8899999999999999997655  67899999999999999774 3  58999999999999999998877


Q ss_pred             CCCcCcccccEEecCCCCCCC
Q 047285          523 PNWVPPFQLETLQLRSCHLGP  543 (552)
Q Consensus       523 ~~~~~~~~L~~L~l~~n~~~~  543 (552)
                        +..+++|+.|++++|++++
T Consensus       371 --~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          371 --LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             --GTTCTTCCEEECCCEEEEC
T ss_pred             --hhcCCCCCEEeccCCcccC
Confidence              7889999999999999996

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=1.8e-37  Score=317.39  Aligned_cols=368  Identities=24%  Similarity=0.226  Sum_probs=230.9

Q ss_pred             CccccccCccccCCCCCCEEeCCCCcCCCCccCcccCCCCCC-------------CEEeCCCCcCCCCCccccCCCCCCC
Q 047285          112 SKLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENL-------------RYLNLSGAKFAGMIPLQLGNLSNLQ  178 (552)
Q Consensus       112 ~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L-------------~~L~L~~~~~~~~lp~~l~~l~~L~  178 (552)
                      +.+ |.+|++++++++|++|++++|.+.+ .+|..++++++|             ++|++++|++++ +|..   .++|+
T Consensus        21 n~l-~~iP~~i~~L~~L~~L~l~~n~~~~-~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~~---~~~L~   94 (454)
T 1jl5_A           21 SNL-TEMPVEAENVKSKTEYYNAWSEWER-NAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPEL---PPHLE   94 (454)
T ss_dssp             --------------CCHHHHHHHHHHHHH-TSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCSC---CTTCS
T ss_pred             Cch-hhCChhHhcccchhhhhccCCcccc-cCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCCC---cCCCC
Confidence            356 7888888888888888888888877 478888877764             888888888874 4542   36788


Q ss_pred             EEeccCCCCCCCccccCCccccCCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCce
Q 047285          179 YLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKA  258 (552)
Q Consensus       179 ~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  258 (552)
                      +|++++|.++.+|.         .+++|++|++++|.+++.+..+      ++|++|++++|.+.+. | .+.++++|++
T Consensus        95 ~L~l~~n~l~~lp~---------~~~~L~~L~l~~n~l~~l~~~~------~~L~~L~L~~n~l~~l-p-~~~~l~~L~~  157 (454)
T 1jl5_A           95 SLVASCNSLTELPE---------LPQSLKSLLVDNNNLKALSDLP------PLLEYLGVSNNQLEKL-P-ELQNSSFLKI  157 (454)
T ss_dssp             EEECCSSCCSSCCC---------CCTTCCEEECCSSCCSCCCSCC------TTCCEEECCSSCCSSC-C-CCTTCTTCCE
T ss_pred             EEEccCCcCCcccc---------ccCCCcEEECCCCccCcccCCC------CCCCEEECcCCCCCCC-c-ccCCCCCCCE
Confidence            88888887776542         1367888888888777643321      5788888888888774 3 4788888888


Q ss_pred             eecCCCCCCCCCccccccccCCCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccC
Q 047285          259 LHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAW  338 (552)
Q Consensus       259 L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~  338 (552)
                      |++++|.+++ ++.   .   ..+|++|++++|.+++ +| .++.+++|++|++++|.+++ +|..   .++|++|++++
T Consensus       158 L~l~~N~l~~-lp~---~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~  224 (454)
T 1jl5_A          158 IDVDNNSLKK-LPD---L---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGN  224 (454)
T ss_dssp             EECCSSCCSC-CCC---C---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCS
T ss_pred             EECCCCcCcc-cCC---C---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcC
Confidence            8888888775 333   2   2478888888888875 55 57788888888888888775 3332   25788888888


Q ss_pred             ccceeecCccccCCCCccCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCC
Q 047285          339 NSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSIC  418 (552)
Q Consensus       339 n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n  418 (552)
                      |.++ .+|.  +..+++|+.|++++|. +++ +|..   +++|+.++++.+....  .+.       ..++|++|++++|
T Consensus       225 n~l~-~lp~--~~~l~~L~~L~l~~N~-l~~-l~~~---~~~L~~L~l~~N~l~~--l~~-------~~~~L~~L~ls~N  287 (454)
T 1jl5_A          225 NILE-ELPE--LQNLPFLTTIYADNNL-LKT-LPDL---PPSLEALNVRDNYLTD--LPE-------LPQSLTFLDVSEN  287 (454)
T ss_dssp             SCCS-SCCC--CTTCTTCCEEECCSSC-CSS-CCSC---CTTCCEEECCSSCCSC--CCC-------CCTTCCEEECCSS
T ss_pred             CcCC-cccc--cCCCCCCCEEECCCCc-CCc-cccc---ccccCEEECCCCcccc--cCc-------ccCcCCEEECcCC
Confidence            8877 6663  7778888888888887 654 4432   3566666666544332  211       1247888888888


Q ss_pred             cCcccCchhhcCCCCCcEEECCCCcccCCCcccccCC-CCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecC
Q 047285          419 QISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGEL-SSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLS  497 (552)
Q Consensus       419 ~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  497 (552)
                      .+++.. .   -.++|+.|++++|++++ ++    .+ ++|++|++++|++++ +|..   +++|++|++++|+++ .+|
T Consensus       288 ~l~~l~-~---~~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp  353 (454)
T 1jl5_A          288 IFSGLS-E---LPPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVP  353 (454)
T ss_dssp             CCSEES-C---CCTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCC
T ss_pred             ccCccc-C---cCCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-ccc
Confidence            877621 1   12577788888887764 22    22 477888888887774 5544   467888888888775 455


Q ss_pred             HHhhhcCCCCCEEEccCCeeeE--EcCCCCcCc-------------ccccEEecCCCCCCC--CCCcccc
Q 047285          498 EIHFVNLTKLTWFSASGNSLIL--KFNPNWVPP-------------FQLETLQLRSCHLGP--HFPSWLH  550 (552)
Q Consensus       498 ~~~~~~l~~L~~L~L~~n~~~~--~~~~~~~~~-------------~~L~~L~l~~n~~~~--~iP~~l~  550 (552)
                      .    .+++|++|++++|++.+  .+|..+..+             .+|+.|++++|++++  .+|++++
T Consensus       354 ~----~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~  419 (454)
T 1jl5_A          354 E----LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVE  419 (454)
T ss_dssp             C----CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---------------------------------
T ss_pred             c----hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhhHh
Confidence            4    36777888888888777  667776666             678888888888887  7777764

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=6.9e-37  Score=323.62  Aligned_cols=391  Identities=20%  Similarity=0.184  Sum_probs=304.7

Q ss_pred             CCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCC
Q 047285          124 DLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGL  203 (552)
Q Consensus       124 ~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l  203 (552)
                      .+...++++++++.++  .+|..+.  ++|++|++++|++++..|..+.++++|++|++++|.++.++..     .+..+
T Consensus        29 ~~~~~~~l~ls~~~L~--~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-----~~~~l   99 (562)
T 3a79_B           29 SNELESMVDYSNRNLT--HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFH-----VFLFN   99 (562)
T ss_dssp             ----CCEEECTTSCCC--SCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTT-----TTTTC
T ss_pred             ccCCCcEEEcCCCCCc--cCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHH-----HhCCC
Confidence            3445599999999999  5787664  8999999999999988788999999999999999998876433     27889


Q ss_pred             CCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCC-CCcccCCCCCceeecCCCCCCCCCccccccccCCCC
Q 047285          204 YMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFP-PLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRN  282 (552)
Q Consensus       204 ~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~  282 (552)
                      ++|++|++++|.++..   +..  .+++|++|++++|.+.+.. |..+.++++|++|++++|.+.+....   .+..+ +
T Consensus       100 ~~L~~L~Ls~N~l~~l---p~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~---~l~~L-~  170 (562)
T 3a79_B          100 QDLEYLDVSHNRLQNI---SCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLL---PVAHL-H  170 (562)
T ss_dssp             TTCCEEECTTSCCCEE---CSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTG---GGTTS-C
T ss_pred             CCCCEEECCCCcCCcc---Ccc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchh---hhhhc-e
Confidence            9999999999999864   333  7999999999999999854 68899999999999999998864322   33333 4


Q ss_pred             ccEEeccCccc--cccCchhhhc--------------------------ccCCcEEeccCCCC-----------------
Q 047285          283 LVFIDLSSNQF--QGQIPIGLRN--------------------------LTSLRHLDLRFNYF-----------------  317 (552)
Q Consensus       283 L~~L~L~~n~~--~~~~~~~l~~--------------------------l~~L~~L~l~~n~l-----------------  317 (552)
                      |++|++++|.+  ++..|..+..                          +++|+.+++++|..                 
T Consensus       171 L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~  250 (562)
T 3a79_B          171 LSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPT  250 (562)
T ss_dssp             EEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSS
T ss_pred             eeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCc
Confidence            49999999988  6666665554                          34555566655531                 


Q ss_pred             -----------CCC----CCccCCCCCCCCEEEccCccceeecCcccc----CCCCccCEEeCCCCCCCCCCCc-hhHhh
Q 047285          318 -----------NST----TPGWLSKFNDLEFLSVAWNSLQGTISSVGL----ENLTSIETLDLSGNSKLGGKIP-TSFAR  377 (552)
Q Consensus       318 -----------~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l----~~l~~L~~L~l~~n~~l~~~~~-~~~~~  377 (552)
                                 .+.    .+.. ...++|++|++++|.++|.+|...+    ..++.|+.+++..+. +  .+| ..+..
T Consensus       251 L~~L~L~~~~l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~-~--~~p~~~~~~  326 (562)
T 3a79_B          251 LLNVTLQHIETTWKCSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQV-F--LFSKEALYS  326 (562)
T ss_dssp             CEEEEEEEEEECHHHHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECC-C--SSCHHHHHH
T ss_pred             ceEEEecCCcCcHHHHHHHHHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhcccce-e--ecChhhhhh
Confidence                       000    0000 1124889999999999988888732    677778888888876 4  555 34443


Q ss_pred             c---ccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccC--CCcccc
Q 047285          378 L---CKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFG--PLPPAL  452 (552)
Q Consensus       378 l---~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~l  452 (552)
                      +   .+|+.++++.........       ...+++|++|++++|.+++..|..+..+++|++|++++|++++  .+|..+
T Consensus       327 ~~~~~~L~~L~l~~n~~~~~~~-------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  399 (562)
T 3a79_B          327 VFAEMNIKMLSISDTPFIHMVC-------PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMT  399 (562)
T ss_dssp             HHHTCCCSEEEEESSCCCCCCC-------CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTT
T ss_pred             hhccCcceEEEccCCCcccccC-------ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhh
Confidence            3   557777776554322111       1356799999999999999899999999999999999999986  345678


Q ss_pred             cCCCCCCEEeCCCCcCCccCcc-cccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcccc
Q 047285          453 GELSSLKKLDLSNNMLNGFIPL-SLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQL  531 (552)
Q Consensus       453 ~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L  531 (552)
                      ..+++|++|++++|.+++.+|. .+..+++|++|++++|++++.+|. .+.  ++|++|++++|++. .+|..+..+++|
T Consensus       400 ~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L  475 (562)
T 3a79_B          400 KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR-CLP--PKVKVLDLHNNRIM-SIPKDVTHLQAL  475 (562)
T ss_dssp             TTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGS-SCC--TTCSEEECCSSCCC-CCCTTTTSSCCC
T ss_pred             cCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhh-hhc--CcCCEEECCCCcCc-ccChhhcCCCCC
Confidence            9999999999999999986665 478899999999999999876654 222  79999999999998 788878899999


Q ss_pred             cEEecCCCCCCCCCCcc
Q 047285          532 ETLQLRSCHLGPHFPSW  548 (552)
Q Consensus       532 ~~L~l~~n~~~~~iP~~  548 (552)
                      +.|++++|+++ .+|..
T Consensus       476 ~~L~L~~N~l~-~l~~~  491 (562)
T 3a79_B          476 QELNVASNQLK-SVPDG  491 (562)
T ss_dssp             SEEECCSSCCC-CCCTT
T ss_pred             CEEECCCCCCC-CCCHH
Confidence            99999999999 78875

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=2.4e-35  Score=305.70  Aligned_cols=331  Identities=20%  Similarity=0.176  Sum_probs=206.2

Q ss_pred             CCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCCCC
Q 047285          126 KHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYM  205 (552)
Q Consensus       126 ~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~  205 (552)
                      +++++|++++|.+++. .+..|..+++|++|+|++|.+++..|..+.++++|++|++++|.++.++..            
T Consensus        32 ~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------------   98 (477)
T 2id5_A           32 TETRLLDLGKNRIKTL-NQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLG------------   98 (477)
T ss_dssp             TTCSEEECCSSCCCEE-CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTT------------
T ss_pred             CCCcEEECCCCccceE-CHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcc------------
Confidence            3556666666665542 345555666666666666665555555555666666666665555443321            


Q ss_pred             CCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCCccE
Q 047285          206 LEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVF  285 (552)
Q Consensus       206 L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~  285 (552)
                                         .+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+.   .+..+++|++
T Consensus        99 -------------------~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~  156 (477)
T 2id5_A           99 -------------------VFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHR---AFSGLNSLEQ  156 (477)
T ss_dssp             -------------------SSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTT---SSTTCTTCCE
T ss_pred             -------------------cccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChh---hccCCCCCCE
Confidence                               234455555555555555555555556666666666666665555444   5556667777


Q ss_pred             EeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCCC
Q 047285          286 IDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNS  365 (552)
Q Consensus       286 L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~  365 (552)
                      |++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|...+.++.. .....+|+.|++++|.
T Consensus       157 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~n~  235 (477)
T 2id5_A          157 LTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPN-CLYGLNLTSLSITHCN  235 (477)
T ss_dssp             EEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTT-TTTTCCCSEEEEESSC
T ss_pred             EECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcc-cccCccccEEECcCCc
Confidence            777777776555556677777777777777777666666777777777777777766666665 3344577777777776


Q ss_pred             CCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCccc
Q 047285          366 KLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLF  445 (552)
Q Consensus       366 ~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~  445 (552)
                       +++..+..+..++                             +|++|++++|.+++..+..+..+++|+.|++++|+++
T Consensus       236 -l~~~~~~~~~~l~-----------------------------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  285 (477)
T 2id5_A          236 -LTAVPYLAVRHLV-----------------------------YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA  285 (477)
T ss_dssp             -CCSCCHHHHTTCT-----------------------------TCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCS
T ss_pred             -ccccCHHHhcCcc-----------------------------ccCeeECCCCcCCccChhhccccccCCEEECCCCccc
Confidence             5543334444444                             6777777777777666666777777777777777777


Q ss_pred             CCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCC
Q 047285          446 GPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPN  524 (552)
Q Consensus       446 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~  524 (552)
                      +..|..+..+++|++|++++|.+++..+..+..+++|++|++++|++........+.  .....+.+.++...+..|..
T Consensus       286 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~--~~~~~~~~~~~~~~C~~p~~  362 (477)
T 2id5_A          286 VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVF--RRRWRLNFNRQQPTCATPEF  362 (477)
T ss_dssp             EECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHH--TTTTSSCCTTCCCBEEESGG
T ss_pred             eECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHH--hhhhccccCccCceeCCchH
Confidence            666777777777777777777777655556677777777777777776544331121  12223344555555555543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=8.9e-35  Score=312.66  Aligned_cols=417  Identities=22%  Similarity=0.229  Sum_probs=295.0

Q ss_pred             ccCccccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCC
Q 047285          117 KVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDS  196 (552)
Q Consensus       117 ~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~  196 (552)
                      .+|..+.  +.+++|||++|.++++ .+..|.++++|++|+|++|++++..|..|.++++|++|+|++|.++.++...  
T Consensus        45 ~vP~~lp--~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~--  119 (635)
T 4g8a_A           45 KIPDNLP--FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA--  119 (635)
T ss_dssp             SCCSSSC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGG--
T ss_pred             ccCCCCC--cCCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHH--
Confidence            3454432  4799999999999953 4568999999999999999999777778999999999999999988776543  


Q ss_pred             ccccCCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCC-CCCcccCCCCCceeecCCCCCCCCCccccc
Q 047285          197 LSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHF-PPLLSANFSSLKALHLAINNFDNSLFQYGS  275 (552)
Q Consensus       197 ~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~  275 (552)
                         |.++++|++|++++|.+++.+  +..++.+++|++|++++|.+.+. .|..+..+++|++|++++|.+.+..+....
T Consensus       120 ---f~~L~~L~~L~Ls~N~l~~l~--~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~  194 (635)
T 4g8a_A          120 ---FSGLSSLQKLVAVETNLASLE--NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR  194 (635)
T ss_dssp             ---GTTCTTCCEEECTTSCCCCST--TCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH
T ss_pred             ---hcCCCCCCEEECCCCcCCCCC--hhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccccc
Confidence               789999999999999998743  34578999999999999999864 577889999999999999999887766222


Q ss_pred             cccCCC-CccEEeccCccccccCchh------------------------hhcccCCcEEeccCCCC------CC-----
Q 047285          276 WVFGLR-NLVFIDLSSNQFQGQIPIG------------------------LRNLTSLRHLDLRFNYF------NS-----  319 (552)
Q Consensus       276 ~~~~l~-~L~~L~L~~n~~~~~~~~~------------------------l~~l~~L~~L~l~~n~l------~~-----  319 (552)
                      .+..++ ....++++.|.+....+..                        +..+..++...+..+..      ..     
T Consensus       195 ~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~  274 (635)
T 4g8a_A          195 VLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA  274 (635)
T ss_dssp             HHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTT
T ss_pred             chhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccc
Confidence            222222 2234566666554322211                        12222222222111000      00     


Q ss_pred             ----------------------CCCccCCCCCCCCEEEccCccceeecCccccCC---------------------CCcc
Q 047285          320 ----------------------TTPGWLSKFNDLEFLSVAWNSLQGTISSVGLEN---------------------LTSI  356 (552)
Q Consensus       320 ----------------------~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~---------------------l~~L  356 (552)
                                            ..+..+....+++.+.+..+.+.+. ..  +..                     ++.|
T Consensus       275 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~L  351 (635)
T 4g8a_A          275 LEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV-KD--FSYNFGWQHLELVNCKFGQFPTLKLKSL  351 (635)
T ss_dssp             TGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC-GG--GGSCCCCSEEEEESCEESSCCCCBCTTC
T ss_pred             cccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc-cc--cccchhhhhhhcccccccCcCcccchhh
Confidence                                  0011112223444444444443321 11  222                     3344


Q ss_pred             CEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCC-cc-------------------ccccccccCCCCCCEEEcc
Q 047285          357 ETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDF-SQ-------------------VLDTFSSCGAYALESLDLS  416 (552)
Q Consensus       357 ~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~-~~-------------------~~~~~~~~~~~~L~~L~ls  416 (552)
                      +.+++..|. ...  +.....+++|+.++++........ .+                   ......+..+++|+.++++
T Consensus       352 ~~l~l~~n~-~~~--~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~  428 (635)
T 4g8a_A          352 KRLTFTSNK-GGN--AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQ  428 (635)
T ss_dssp             CEEEEESCC-SCC--BCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECT
T ss_pred             hhccccccc-CCC--Ccccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhh
Confidence            455554443 221  223345677777777655433210 00                   0011234567788888888


Q ss_pred             CCcCcccC-chhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCC-ccCcccccCCCCCCeeeCCCcccce
Q 047285          417 ICQISGHL-TNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLN-GFIPLSLGKLSHLEYLDLSNNKLNA  494 (552)
Q Consensus       417 ~n~~~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~  494 (552)
                      .+...... +..+..+++++.++++.|++.+..+..+..+++|++|++++|.+. +.+|..+..+++|++|+|++|++++
T Consensus       429 ~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~  508 (635)
T 4g8a_A          429 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ  508 (635)
T ss_dssp             TSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE
T ss_pred             hccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCC
Confidence            87765544 346778899999999999999888899999999999999999854 4578889999999999999999988


Q ss_pred             ecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcccccEEecCCCCCCCCCCcccc
Q 047285          495 SLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLGPHFPSWLH  550 (552)
Q Consensus       495 ~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~iP~~l~  550 (552)
                      ..|. .|.++++|++|+|++|++.+..|..+..+++|+.|++++|++++..|+.+.
T Consensus       509 l~~~-~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~  563 (635)
T 4g8a_A          509 LSPT-AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ  563 (635)
T ss_dssp             ECTT-TTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTT
T ss_pred             cChH-HHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHH
Confidence            7777 899999999999999999988888889999999999999999998888765

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=2.9e-35  Score=305.12  Aligned_cols=325  Identities=20%  Similarity=0.203  Sum_probs=275.9

Q ss_pred             CCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCCCCCC
Q 047285          128 LIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLE  207 (552)
Q Consensus       128 L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~  207 (552)
                      -+.++.+++.++  .+|..+.  +++++|++++|++++..|..+.++++|++|++++|.++.+                 
T Consensus        13 ~~~v~c~~~~l~--~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-----------------   71 (477)
T 2id5_A           13 DRAVLCHRKRFV--AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAV-----------------   71 (477)
T ss_dssp             TTEEECCSCCCS--SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE-----------------
T ss_pred             CCEEEeCCCCcC--cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEe-----------------
Confidence            357788888877  5676553  5788888888888876677788888888888887765543                 


Q ss_pred             EEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCCccEEe
Q 047285          208 HLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFID  287 (552)
Q Consensus       208 ~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~  287 (552)
                                    .+..+.++++|++|++++|.+.+.++..+.++++|++|++++|.+.+..+.   .+..+++|++|+
T Consensus        72 --------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~---~~~~l~~L~~L~  134 (477)
T 2id5_A           72 --------------EPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDY---MFQDLYNLKSLE  134 (477)
T ss_dssp             --------------CTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTT---TTTTCTTCCEEE
T ss_pred             --------------ChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChh---HccccccCCEEE
Confidence                          234556778888888888888888888899999999999999999888777   788899999999


Q ss_pred             ccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCCCCC
Q 047285          288 LSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKL  367 (552)
Q Consensus       288 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l  367 (552)
                      +++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+. .+..+++|+.|++++|. .
T Consensus       135 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~-~~~~l~~L~~L~l~~~~-~  212 (477)
T 2id5_A          135 VGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDY-SFKRLYRLKVLEISHWP-Y  212 (477)
T ss_dssp             ECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTT-CSCSCTTCCEEEEECCT-T
T ss_pred             CCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChh-hcccCcccceeeCCCCc-c
Confidence            999999988888899999999999999999988778889999999999999999865444 48999999999999997 5


Q ss_pred             CCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCC
Q 047285          368 GGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGP  447 (552)
Q Consensus       368 ~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~  447 (552)
                      .+.++......                             .+|++|++++|.+++..+..+..+++|+.|++++|++++.
T Consensus       213 ~~~~~~~~~~~-----------------------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  263 (477)
T 2id5_A          213 LDTMTPNCLYG-----------------------------LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTI  263 (477)
T ss_dssp             CCEECTTTTTT-----------------------------CCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEE
T ss_pred             ccccCcccccC-----------------------------ccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCcc
Confidence            55555433222                             2799999999999976667899999999999999999988


Q ss_pred             CcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcC
Q 047285          448 LPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFN  522 (552)
Q Consensus       448 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~  522 (552)
                      .+..+..+++|++|++++|.+++..|..+..+++|+.|+|++|++++ ++...+..+++|++|++++|++.+.++
T Consensus       264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~c~c~  337 (477)
T 2id5_A          264 EGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTT-LEESVFHSVGNLETLILDSNPLACDCR  337 (477)
T ss_dssp             CTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSC-CCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred             ChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCce-eCHhHcCCCcccCEEEccCCCccCccc
Confidence            88889999999999999999998889999999999999999999966 444478899999999999999997754

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=5.8e-35  Score=298.89  Aligned_cols=358  Identities=22%  Similarity=0.185  Sum_probs=271.7

Q ss_pred             cCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCC-------------CEEeccCCCCCC
Q 047285          123 VDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNL-------------QYLDLSGTFLSN  189 (552)
Q Consensus       123 ~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L-------------~~L~l~~n~l~~  189 (552)
                      .+.++|++|++++|.+ + .+|+.++++++|++|++++|++.+.+|..++++++|             ++|++++|.++.
T Consensus         8 ~~~~~L~~L~l~~n~l-~-~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~   85 (454)
T 1jl5_A            8 VSNTFLQEPLRHSSNL-T-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS   85 (454)
T ss_dssp             ----------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC
T ss_pred             cccccchhhhcccCch-h-hCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc
Confidence            3568999999999999 4 699999999999999999999999999999998875             999999998887


Q ss_pred             CccccCCccccCCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCC
Q 047285          190 YDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNS  269 (552)
Q Consensus       190 ~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  269 (552)
                      +|.         ..++|++|++++|.+++.+.      .+++|++|++++|.+.+.+..    .++|++|++++|.+++ 
T Consensus        86 lp~---------~~~~L~~L~l~~n~l~~lp~------~~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n~l~~-  145 (454)
T 1jl5_A           86 LPE---------LPPHLESLVASCNSLTELPE------LPQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQLEK-  145 (454)
T ss_dssp             CCS---------CCTTCSEEECCSSCCSSCCC------CCTTCCEEECCSSCCSCCCSC----CTTCCEEECCSSCCSS-
T ss_pred             CCC---------CcCCCCEEEccCCcCCcccc------ccCCCcEEECCCCccCcccCC----CCCCCEEECcCCCCCC-
Confidence            653         13689999999999987542      248999999999999875432    2799999999999987 


Q ss_pred             CccccccccCCCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccc
Q 047285          270 LFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVG  349 (552)
Q Consensus       270 ~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~  349 (552)
                      +|    .+..+++|++|++++|.+++ +|..   .++|++|++++|.+++ +| .+.++++|++|++++|.+++ +|.. 
T Consensus       146 lp----~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~-  213 (454)
T 1jl5_A          146 LP----ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL-  213 (454)
T ss_dssp             CC----CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC-
T ss_pred             Cc----ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC-
Confidence            44    47889999999999999985 5643   3699999999999987 45 58999999999999999984 5543 


Q ss_pred             cCCCCccCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhc
Q 047285          350 LENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLL  429 (552)
Q Consensus       350 l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~  429 (552)
                         .++|++|++++|. ++ .+|. ++.+++|+.++++......  .+.       ..++|++|++++|.+++ +|..  
T Consensus       214 ---~~~L~~L~l~~n~-l~-~lp~-~~~l~~L~~L~l~~N~l~~--l~~-------~~~~L~~L~l~~N~l~~-l~~~--  275 (454)
T 1jl5_A          214 ---PLSLESIVAGNNI-LE-ELPE-LQNLPFLTTIYADNNLLKT--LPD-------LPPSLEALNVRDNYLTD-LPEL--  275 (454)
T ss_dssp             ---CTTCCEEECCSSC-CS-SCCC-CTTCTTCCEEECCSSCCSS--CCS-------CCTTCCEEECCSSCCSC-CCCC--
T ss_pred             ---cCcccEEECcCCc-CC-cccc-cCCCCCCCEEECCCCcCCc--ccc-------cccccCEEECCCCcccc-cCcc--
Confidence               3689999999997 76 6774 8899999999888655432  211       12589999999999987 4443  


Q ss_pred             CCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCE
Q 047285          430 QFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTW  509 (552)
Q Consensus       430 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~  509 (552)
                       +++|+.|++++|++++ +|..   .++|++|++++|.+++ ++.   ..++|++|++++|++++ +|.    .+++|++
T Consensus       276 -~~~L~~L~ls~N~l~~-l~~~---~~~L~~L~l~~N~l~~-i~~---~~~~L~~L~Ls~N~l~~-lp~----~~~~L~~  341 (454)
T 1jl5_A          276 -PQSLTFLDVSENIFSG-LSEL---PPNLYYLNASSNEIRS-LCD---LPPSLEELNVSNNKLIE-LPA----LPPRLER  341 (454)
T ss_dssp             -CTTCCEEECCSSCCSE-ESCC---CTTCCEEECCSSCCSE-ECC---CCTTCCEEECCSSCCSC-CCC----CCTTCCE
T ss_pred             -cCcCCEEECcCCccCc-ccCc---CCcCCEEECcCCcCCc-ccC---CcCcCCEEECCCCcccc-ccc----cCCcCCE
Confidence             4899999999999985 2221   2689999999999985 332   12589999999999976 665    2689999


Q ss_pred             EEccCCeeeEEcCCCCcCcccccEEecCCCCCCC--CCCcccc
Q 047285          510 FSASGNSLILKFNPNWVPPFQLETLQLRSCHLGP--HFPSWLH  550 (552)
Q Consensus       510 L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~--~iP~~l~  550 (552)
                      |++++|++. .+|.   .+.+|+.|++++|++++  .+|.+++
T Consensus       342 L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~  380 (454)
T 1jl5_A          342 LIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVE  380 (454)
T ss_dssp             EECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCC
T ss_pred             EECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHH
Confidence            999999998 4665   46799999999999999  8998875

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=4.8e-34  Score=292.37  Aligned_cols=351  Identities=17%  Similarity=0.165  Sum_probs=233.7

Q ss_pred             CcEEEEEcCCCCccCCCCchhhcccCccccCccccccCccccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCC
Q 047285           82 GHVLQLSLQNPFSYLGGDLREVKAGSNYERSKLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGA  161 (552)
Q Consensus        82 ~~v~~L~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~  161 (552)
                      .+++.|++++.                    .+.+. | .+..+++|++|++++|.+++  +|  ++.+++|++|++++|
T Consensus        42 ~~L~~L~Ls~n--------------------~l~~~-~-~l~~l~~L~~L~Ls~n~l~~--~~--~~~l~~L~~L~Ls~N   95 (457)
T 3bz5_A           42 ATLTSLDCHNS--------------------SITDM-T-GIEKLTGLTKLICTSNNITT--LD--LSQNTNLTYLACDSN   95 (457)
T ss_dssp             TTCCEEECCSS--------------------CCCCC-T-TGGGCTTCSEEECCSSCCSC--CC--CTTCTTCSEEECCSS
T ss_pred             CCCCEEEccCC--------------------CcccC-h-hhcccCCCCEEEccCCcCCe--Ec--cccCCCCCEEECcCC
Confidence            46889999883                    56553 4 68999999999999999996  44  889999999999999


Q ss_pred             cCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCC
Q 047285          162 KFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQ  241 (552)
Q Consensus       162 ~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~  241 (552)
                      ++++. |  ++++++|++|++++|.++.++        +..+++|++|++++|.+++.     .+..+++|++|++++|.
T Consensus        96 ~l~~~-~--~~~l~~L~~L~L~~N~l~~l~--------~~~l~~L~~L~l~~N~l~~l-----~l~~l~~L~~L~l~~n~  159 (457)
T 3bz5_A           96 KLTNL-D--VTPLTKLTYLNCDTNKLTKLD--------VSQNPLLTYLNCARNTLTEI-----DVSHNTQLTELDCHLNK  159 (457)
T ss_dssp             CCSCC-C--CTTCTTCCEEECCSSCCSCCC--------CTTCTTCCEEECTTSCCSCC-----CCTTCTTCCEEECTTCS
T ss_pred             CCcee-e--cCCCCcCCEEECCCCcCCeec--------CCCCCcCCEEECCCCcccee-----ccccCCcCCEEECCCCC
Confidence            99864 4  899999999999999887753        77899999999999999874     26789999999999996


Q ss_pred             CCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCC
Q 047285          242 LCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTT  321 (552)
Q Consensus       242 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~  321 (552)
                      ..+..  .+..+++|+.|++++|.+++.      .+..+++|+.|++++|.+++.   .++.+++|++|++++|++++ +
T Consensus       160 ~~~~~--~~~~l~~L~~L~ls~n~l~~l------~l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-i  227 (457)
T 3bz5_A          160 KITKL--DVTPQTQLTTLDCSFNKITEL------DVSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-I  227 (457)
T ss_dssp             CCCCC--CCTTCTTCCEEECCSSCCCCC------CCTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-C
T ss_pred             ccccc--ccccCCcCCEEECCCCcccee------ccccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-c
Confidence            55554  477889999999999998873      256789999999999999864   37889999999999999998 4


Q ss_pred             CccCCCCCCCCEEEccCccceeecCccccCCCCccCEEe----------CCCCCCCCCCCchhHhhcccCceeecccccC
Q 047285          322 PGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLD----------LSGNSKLGGKIPTSFARLCKLTSVDLSLIDL  391 (552)
Q Consensus       322 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~----------l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~  391 (552)
                      |  +..+++|++|++++|++++. +   ...+++|+.|+          +++|. +.+.+|  ++.+++|+.++++.+..
T Consensus       228 p--~~~l~~L~~L~l~~N~l~~~-~---~~~l~~L~~L~l~~n~L~~L~l~~n~-~~~~~~--~~~l~~L~~L~Ls~n~~  298 (457)
T 3bz5_A          228 D--VTPLTQLTYFDCSVNPLTEL-D---VSTLSKLTTLHCIQTDLLEIDLTHNT-QLIYFQ--AEGCRKIKELDVTHNTQ  298 (457)
T ss_dssp             C--CTTCTTCSEEECCSSCCSCC-C---CTTCTTCCEEECTTCCCSCCCCTTCT-TCCEEE--CTTCTTCCCCCCTTCTT
T ss_pred             C--ccccCCCCEEEeeCCcCCCc-C---HHHCCCCCEEeccCCCCCEEECCCCc-cCCccc--ccccccCCEEECCCCcc
Confidence            5  78899999999999999864 3   33445555544          44444 334444  23445555555443321


Q ss_pred             CCC---CccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcC
Q 047285          392 SQD---FSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNML  468 (552)
Q Consensus       392 ~~~---~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  468 (552)
                      ...   ....+....+.++++|++|++++|++++.   .+..+++|+.|++++|++++        ++.|..|++++|.+
T Consensus       299 l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l  367 (457)
T 3bz5_A          299 LYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNF  367 (457)
T ss_dssp             CCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSE
T ss_pred             cceeccCCCcceEechhhcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC--------ccccccccccCCcE
Confidence            110   00011111222333444444444444432   13344444444444444432        12333333444444


Q ss_pred             CccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEE
Q 047285          469 NGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFS  511 (552)
Q Consensus       469 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  511 (552)
                      .|.     ..+..|+.+++++|+++|.+|...+....++....
T Consensus       368 ~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~~~~~~~~~~  405 (457)
T 3bz5_A          368 EAE-----GQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIE  405 (457)
T ss_dssp             EEE-----EEEEECCCBCCBTTBEEEECCTTCBCTTSCCCEEE
T ss_pred             Eec-----ceeeecCccccccCcEEEEcChhHhcccCceeecc
Confidence            332     12334555566666666666553333333443333

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=1.6e-34  Score=291.38  Aligned_cols=313  Identities=20%  Similarity=0.246  Sum_probs=197.3

Q ss_pred             cCCCCCCEEeCCCCcCCCCccCcc-cCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccC
Q 047285          123 VDLKHLIHLDLSGNDFEGIQIPKY-LGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLS  201 (552)
Q Consensus       123 ~~l~~L~~L~Ls~n~~~~~~~p~~-~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~  201 (552)
                      ..++++++|+++++.+.  .+|.. +..+++|++|++++|++++..|..++++++|++|++++|.++.++...     +.
T Consensus        42 ~~l~~l~~l~l~~~~l~--~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-----~~  114 (390)
T 3o6n_A           42 ITLNNQKIVTFKNSTMR--KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV-----FQ  114 (390)
T ss_dssp             GGGCCCSEEEEESCEES--EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTT-----TT
T ss_pred             cccCCceEEEecCCchh--hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHH-----hc
Confidence            45789999999999988  45654 688999999999999998777778999999999999999887654322     56


Q ss_pred             CCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCC
Q 047285          202 GLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLR  281 (552)
Q Consensus       202 ~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~  281 (552)
                      .+++|++|++++|.+...+  ...+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++.            
T Consensus       115 ~l~~L~~L~L~~n~l~~l~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------------  180 (390)
T 3o6n_A          115 NVPLLTVLVLERNDLSSLP--RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV------------  180 (390)
T ss_dssp             TCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC------------
T ss_pred             CCCCCCEEECCCCccCcCC--HHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc------------
Confidence            6677777777777666421  12235566666666666666655555555555555555555544432            


Q ss_pred             CccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeC
Q 047285          282 NLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDL  361 (552)
Q Consensus       282 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l  361 (552)
                                        .+..+++|++|++++|.+++.     ...++|++|++++|.+.. ++..   ..++|+.|++
T Consensus       181 ------------------~~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~~-~~~~---~~~~L~~L~l  233 (390)
T 3o6n_A          181 ------------------DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINV-VRGP---VNVELTILKL  233 (390)
T ss_dssp             ------------------CGGGCTTCSEEECCSSCCSEE-----ECCSSCSEEECCSSCCCE-EECC---CCSSCCEEEC
T ss_pred             ------------------ccccccccceeeccccccccc-----CCCCcceEEECCCCeeee-cccc---ccccccEEEC
Confidence                              123344455555555444321     122355556666555542 2221   2356666666


Q ss_pred             CCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCC
Q 047285          362 SGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGH  441 (552)
Q Consensus       362 ~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~  441 (552)
                      ++|. +++.  ..+..+                             ++|++|++++|.+++..|..+..+++|+.|++++
T Consensus       234 ~~n~-l~~~--~~l~~l-----------------------------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  281 (390)
T 3o6n_A          234 QHNN-LTDT--AWLLNY-----------------------------PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN  281 (390)
T ss_dssp             CSSC-CCCC--GGGGGC-----------------------------TTCSEEECCSSCCCEEESGGGTTCSSCCEEECCS
T ss_pred             CCCC-Cccc--HHHcCC-----------------------------CCccEEECCCCcCCCcChhHccccccCCEEECCC
Confidence            6665 4432  223222                             2666777777776666666666677777777777


Q ss_pred             CcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEc
Q 047285          442 NSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKF  521 (552)
Q Consensus       442 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~  521 (552)
                      |++++ +|..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++ ++   +..+++|++|++++|++.+..
T Consensus       282 n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~-~~---~~~~~~L~~L~l~~N~~~~~~  355 (390)
T 3o6n_A          282 NRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK---LSTHHTLKNLTLSHNDWDCNS  355 (390)
T ss_dssp             SCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC---CCTTCCCSEEECCSSCEEHHH
T ss_pred             CcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccce-eC---chhhccCCEEEcCCCCccchh
Confidence            76663 4555566677777777777666 455556666777777777777643 22   455667777777777766543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=3e-33  Score=277.56  Aligned_cols=307  Identities=25%  Similarity=0.333  Sum_probs=185.9

Q ss_pred             ccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccC
Q 047285          122 LVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLS  201 (552)
Q Consensus       122 l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~  201 (552)
                      +..+++|++|+++++.+..  ++. ++.+++|++|++++|++++ +|. +.++++|++|++++|.++.++       .+.
T Consensus        40 ~~~l~~L~~L~l~~~~i~~--~~~-~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~~~-------~~~  107 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVAS--IQG-IEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITDIS-------ALQ  107 (347)
T ss_dssp             HHHHTTCSEEECCSSCCCC--CTT-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCG-------GGT
T ss_pred             chhcccccEEEEeCCcccc--chh-hhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccCch-------HHc
Confidence            5678999999999999984  554 8889999999999999985 444 899999999999999877643       377


Q ss_pred             CCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCC
Q 047285          202 GLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLR  281 (552)
Q Consensus       202 ~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~  281 (552)
                      .+++|++|++++|.+...+.    +..+++|++|++++|.....++. +..+++|+.|++++|.+.+..+     +..++
T Consensus       108 ~l~~L~~L~l~~n~i~~~~~----~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~-----~~~l~  177 (347)
T 4fmz_A          108 NLTNLRELYLNEDNISDISP----LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP-----IANLT  177 (347)
T ss_dssp             TCTTCSEEECTTSCCCCCGG----GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG-----GGGCT
T ss_pred             CCCcCCEEECcCCcccCchh----hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh-----hccCC
Confidence            88888888888888876432    56777888888887754443332 4555555555555555443221     33444


Q ss_pred             CccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeC
Q 047285          282 NLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDL  361 (552)
Q Consensus       282 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l  361 (552)
                      +|++|++++|.+.                        +..+  +..+++|+.+++++|.+.+..+   +..+++|++|++
T Consensus       178 ~L~~L~l~~n~l~------------------------~~~~--~~~l~~L~~L~l~~n~l~~~~~---~~~~~~L~~L~l  228 (347)
T 4fmz_A          178 DLYSLSLNYNQIE------------------------DISP--LASLTSLHYFTAYVNQITDITP---VANMTRLNSLKI  228 (347)
T ss_dssp             TCSEEECTTSCCC------------------------CCGG--GGGCTTCCEEECCSSCCCCCGG---GGGCTTCCEEEC
T ss_pred             CCCEEEccCCccc------------------------cccc--ccCCCccceeecccCCCCCCch---hhcCCcCCEEEc
Confidence            4555555555444                        3222  3444455555555554442211   344555555555


Q ss_pred             CCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCC
Q 047285          362 SGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGH  441 (552)
Q Consensus       362 ~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~  441 (552)
                      ++|. +++..+  +..+                             ++|++|++++|.+++.  ..+..+++|+.|++++
T Consensus       229 ~~n~-l~~~~~--~~~l-----------------------------~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~  274 (347)
T 4fmz_A          229 GNNK-ITDLSP--LANL-----------------------------SQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGS  274 (347)
T ss_dssp             CSSC-CCCCGG--GTTC-----------------------------TTCCEEECCSSCCCCC--GGGTTCTTCCEEECCS
T ss_pred             cCCc-cCCCcc--hhcC-----------------------------CCCCEEECCCCccCCC--hhHhcCCCcCEEEccC
Confidence            5554 332211  2222                             2555555555555542  2455556666666666


Q ss_pred             CcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeee
Q 047285          442 NSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLI  518 (552)
Q Consensus       442 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~  518 (552)
                      |++++.  ..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..|   +..+++|++|++++|+++
T Consensus       275 n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          275 NQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP---LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             SCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG---GGGCTTCSEESSSCC---
T ss_pred             CccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC---hhhhhccceeehhhhccc
Confidence            665532  235556666666666666665555556666666666666666654333   455666666666666653

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=9.5e-34  Score=301.22  Aligned_cols=311  Identities=22%  Similarity=0.252  Sum_probs=186.1

Q ss_pred             CCCCCCEEeCCCCcCCCCccC-cccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCC
Q 047285          124 DLKHLIHLDLSGNDFEGIQIP-KYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSG  202 (552)
Q Consensus       124 ~l~~L~~L~Ls~n~~~~~~~p-~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~  202 (552)
                      .+++++.|++++|.+..  +| ..++.+++|++|++++|.+++..|..++++++|++|++++|.++.++...     +..
T Consensus        49 ~l~~l~~l~l~~~~l~~--lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-----~~~  121 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRK--LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV-----FQN  121 (597)
T ss_dssp             GGCCCSEEEESSCEESE--ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTT-----TTT
T ss_pred             cCCCceEEEeeCCCCCC--cCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHH-----HcC
Confidence            46788999999988884  44 44678899999999999988777778889999999999988877655332     566


Q ss_pred             CCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCC
Q 047285          203 LYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRN  282 (552)
Q Consensus       203 l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~  282 (552)
                      +++|++|++++|.+...+  +..+..+++|++|++++|.+.+.++..+..+++|+.|++++|.+++..      +..+++
T Consensus       122 l~~L~~L~L~~n~l~~l~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~------~~~l~~  193 (597)
T 3oja_B          122 VPLLTVLVLERNDLSSLP--RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD------LSLIPS  193 (597)
T ss_dssp             CTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC------GGGCTT
T ss_pred             CCCCCEEEeeCCCCCCCC--HHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC------hhhhhh
Confidence            777777777777766532  223466777777777777777776666666667777777666665532      234556


Q ss_pred             ccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCC
Q 047285          283 LVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLS  362 (552)
Q Consensus       283 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~  362 (552)
                      |+.|++++|.+.+     +...++|+.|++++|.+....+..   .++|+.|++++|.+++.  .. +..+++|+.|+++
T Consensus       194 L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~--~~-l~~l~~L~~L~Ls  262 (597)
T 3oja_B          194 LFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT--AW-LLNYPGLVEVDLS  262 (597)
T ss_dssp             CSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC--GG-GGGCTTCSEEECC
T ss_pred             hhhhhcccCcccc-----ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCCC--hh-hccCCCCCEEECC
Confidence            6666666665543     223345666666666554332211   13555555555555531  11 4455555555555


Q ss_pred             CCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCC
Q 047285          363 GNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHN  442 (552)
Q Consensus       363 ~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n  442 (552)
                      +|. +.+..|..+..++                             +|++|++++|.+++ +|..+..+++|+.|+|++|
T Consensus       263 ~N~-l~~~~~~~~~~l~-----------------------------~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N  311 (597)
T 3oja_B          263 YNE-LEKIMYHPFVKMQ-----------------------------RLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHN  311 (597)
T ss_dssp             SSC-CCEEESGGGTTCS-----------------------------SCCEEECTTSCCCE-EECSSSCCTTCCEEECCSS
T ss_pred             CCc-cCCCCHHHhcCcc-----------------------------CCCEEECCCCCCCC-CCcccccCCCCcEEECCCC
Confidence            554 4444444444333                             45555555555543 2333444555555555555


Q ss_pred             cccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCccccee
Q 047285          443 SLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNAS  495 (552)
Q Consensus       443 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  495 (552)
                      .++ .+|..+..+++|++|++++|.+++. +  +..+++|+.|++++|++.+.
T Consensus       312 ~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~  360 (597)
T 3oja_B          312 HLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN  360 (597)
T ss_dssp             CCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred             CCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCCh
Confidence            555 4444455555555555555555432 1  33445555555555555443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=2.1e-32  Score=271.56  Aligned_cols=307  Identities=26%  Similarity=0.365  Sum_probs=234.2

Q ss_pred             cCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCCCCCCEEeCCCCcCCCCcchhhhc
Q 047285          147 LGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVT  226 (552)
Q Consensus       147 ~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~  226 (552)
                      +..+++|++|+++++.+.. +| .+..+++|++|++++|.++.++.       +..+++|++|++++|.+...+    .+
T Consensus        40 ~~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~~~-------~~~l~~L~~L~L~~n~i~~~~----~~  106 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDISP-------LSNLVKLTNLYIGTNKITDIS----AL  106 (347)
T ss_dssp             HHHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-------GTTCTTCCEEECCSSCCCCCG----GG
T ss_pred             chhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccchh-------hhcCCcCCEEEccCCcccCch----HH
Confidence            4467888888888888873 44 37778888888888887665432       566667777777777665531    34


Q ss_pred             CCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCCccEEeccCccccccCchhhhcccC
Q 047285          227 NSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTS  306 (552)
Q Consensus       227 ~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~  306 (552)
                      ..+++|++|++++|.+.+..+                             +..+++|++|++++|.....++ .+..+++
T Consensus       107 ~~l~~L~~L~l~~n~i~~~~~-----------------------------~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~  156 (347)
T 4fmz_A          107 QNLTNLRELYLNEDNISDISP-----------------------------LANLTKMYSLNLGANHNLSDLS-PLSNMTG  156 (347)
T ss_dssp             TTCTTCSEEECTTSCCCCCGG-----------------------------GTTCTTCCEEECTTCTTCCCCG-GGTTCTT
T ss_pred             cCCCcCCEEECcCCcccCchh-----------------------------hccCCceeEEECCCCCCccccc-chhhCCC
Confidence            555666666666555543322                             4456667777777775544433 3777888


Q ss_pred             CcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCCCCCCCCCchhHhhcccCceeec
Q 047285          307 LRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDL  386 (552)
Q Consensus       307 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l  386 (552)
                      |++|++++|.+.+..+  +..+++|++|++++|.+.+ ++.  +..+++|+.+++++|. +.+..+  +..+        
T Consensus       157 L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~l~~n~-l~~~~~--~~~~--------  220 (347)
T 4fmz_A          157 LNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED-ISP--LASLTSLHYFTAYVNQ-ITDITP--VANM--------  220 (347)
T ss_dssp             CCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCC-CGG--GGGCTTCCEEECCSSC-CCCCGG--GGGC--------
T ss_pred             CcEEEecCCCcCCchh--hccCCCCCEEEccCCcccc-ccc--ccCCCccceeecccCC-CCCCch--hhcC--------
Confidence            8888888888776544  7788999999999999874 333  6788999999999997 654333  3333        


Q ss_pred             ccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCC
Q 047285          387 SLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNN  466 (552)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  466 (552)
                                           ++|++|++++|.+++..+  +..+++|++|++++|++++ + ..+..+++|++|++++|
T Consensus       221 ---------------------~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n  275 (347)
T 4fmz_A          221 ---------------------TRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSN  275 (347)
T ss_dssp             ---------------------TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSS
T ss_pred             ---------------------CcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCC
Confidence                                 389999999999987554  8899999999999999985 3 56899999999999999


Q ss_pred             cCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcccccEEecCCCCCC
Q 047285          467 MLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLG  542 (552)
Q Consensus       467 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~  542 (552)
                      .+++.  ..+..+++|++|++++|++++..+. .+..+++|++|++++|++++..|  +..+++|+.|++++|+++
T Consensus       276 ~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          276 QISDI--SVLNNLSQLNSLFLNNNQLGNEDME-VIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             CCCCC--GGGGGCTTCSEEECCSSCCCGGGHH-HHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             ccCCC--hhhcCCCCCCEEECcCCcCCCcChh-HhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            99853  4578899999999999999877776 79999999999999999997766  778899999999999986

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=1.4e-32  Score=277.12  Aligned_cols=311  Identities=21%  Similarity=0.233  Sum_probs=243.0

Q ss_pred             CCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCCCCCCEEeCCCCcCCCCcchhhhcCC
Q 047285          149 SLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNS  228 (552)
Q Consensus       149 ~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~  228 (552)
                      .++++++|+++++.+....+..+.++++|++|++++|.++.++.                               ..+..
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~-------------------------------~~~~~   91 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDT-------------------------------YAFAY   91 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECT-------------------------------TTTTT
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccCh-------------------------------hhccC
Confidence            36789999999999885433446888999999999887765432                               12344


Q ss_pred             CCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCCccEEeccCccccccCchhhhcccCCc
Q 047285          229 LPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLR  308 (552)
Q Consensus       229 ~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~  308 (552)
                      +++|++|++++|.+.+.++..+.++++|++|++++|.++...+.   .+..+++|++|++++|.+.+..+..+..+++|+
T Consensus        92 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  168 (390)
T 3o6n_A           92 AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRG---IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ  168 (390)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCC
T ss_pred             CCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHH---HhcCCCCCcEEECCCCccCccChhhccCCCCCC
Confidence            55555555555555555566666666666666666666643333   456778888888888888877777788899999


Q ss_pred             EEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCCCCCCCCCchhHhhcccCceeeccc
Q 047285          309 HLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSL  388 (552)
Q Consensus       309 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~  388 (552)
                      +|++++|.+++..   +..+++|+.+++++|.+++      +...++|+.|++++|. +... |..              
T Consensus       169 ~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~~------~~~~~~L~~L~l~~n~-l~~~-~~~--------------  223 (390)
T 3o6n_A          169 NLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST------LAIPIAVEELDASHNS-INVV-RGP--------------  223 (390)
T ss_dssp             EEECCSSCCSBCC---GGGCTTCSEEECCSSCCSE------EECCSSCSEEECCSSC-CCEE-ECC--------------
T ss_pred             EEECCCCcCCccc---cccccccceeecccccccc------cCCCCcceEEECCCCe-eeec-ccc--------------
Confidence            9999999988653   5567899999999998874      3344689999999997 5422 210              


Q ss_pred             ccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcC
Q 047285          389 IDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNML  468 (552)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  468 (552)
                                       ..++|++|++++|.+++.  ..+..+++|++|++++|++++..|..+..+++|++|++++|.+
T Consensus       224 -----------------~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l  284 (390)
T 3o6n_A          224 -----------------VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL  284 (390)
T ss_dssp             -----------------CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCC
T ss_pred             -----------------ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcC
Confidence                             123799999999999864  5788999999999999999988899999999999999999999


Q ss_pred             CccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcccccEEecCCCCCCC
Q 047285          469 NGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLGP  543 (552)
Q Consensus       469 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~  543 (552)
                      ++ +|..+..+++|++|++++|+++ .+|. .+..+++|++|++++|++... +  +..+++|+.|++++|++.+
T Consensus       285 ~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~-~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~  353 (390)
T 3o6n_A          285 VA-LNLYGQPIPTLKVLDLSHNHLL-HVER-NQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDC  353 (390)
T ss_dssp             CE-EECSSSCCTTCCEEECCSSCCC-CCGG-GHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred             cc-cCcccCCCCCCCEEECCCCcce-ecCc-cccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccc
Confidence            84 6777788999999999999996 5665 578899999999999999754 2  6677899999999999874

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=1.1e-32  Score=268.80  Aligned_cols=253  Identities=23%  Similarity=0.337  Sum_probs=195.6

Q ss_pred             CCCceeecCCCCCCC--CCccccccccCCCCccEEeccC-ccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCC
Q 047285          254 SSLKALHLAINNFDN--SLFQYGSWVFGLRNLVFIDLSS-NQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFND  330 (552)
Q Consensus       254 ~~L~~L~l~~n~~~~--~~~~~~~~~~~l~~L~~L~L~~-n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~  330 (552)
                      .+++.|++++|.+.+  .++.   .+..+++|++|++++ |.+.+.+|..+..+++|++|++++|.+++.+|..+..+++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~---~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~  126 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPS---SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT  126 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCG---GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred             ceEEEEECCCCCccCCcccCh---hHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCC
Confidence            345566666666665  4554   566667777777773 6666667777777777777777777777677777777777


Q ss_pred             CCEEEccCccceeecCccccCCCCccCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCC
Q 047285          331 LEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYAL  410 (552)
Q Consensus       331 L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L  410 (552)
                      |++|++++|.+++.+|.. +..+++|++|++++|. +++.+|..+..++                            +.|
T Consensus       127 L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~-l~~~~p~~l~~l~----------------------------~~L  176 (313)
T 1ogq_A          127 LVTLDFSYNALSGTLPPS-ISSLPNLVGITFDGNR-ISGAIPDSYGSFS----------------------------KLF  176 (313)
T ss_dssp             CCEEECCSSEEESCCCGG-GGGCTTCCEEECCSSC-CEEECCGGGGCCC----------------------------TTC
T ss_pred             CCEEeCCCCccCCcCChH-HhcCCCCCeEECcCCc-ccCcCCHHHhhhh----------------------------hcC
Confidence            777777777777666665 6777777777777776 6666666665543                            168


Q ss_pred             CEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCc
Q 047285          411 ESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNN  490 (552)
Q Consensus       411 ~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  490 (552)
                      ++|++++|.+++.+|..+..++ |+.|++++|++++..|..+..+++|++|++++|.+++.+|. +..+++|++|++++|
T Consensus       177 ~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N  254 (313)
T 1ogq_A          177 TSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNN  254 (313)
T ss_dssp             CEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSS
T ss_pred             cEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCC
Confidence            8888888888888888888887 89999999988888888888889999999999988866665 677889999999999


Q ss_pred             ccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcccccEEecCCCC-CCC
Q 047285          491 KLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCH-LGP  543 (552)
Q Consensus       491 ~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~-~~~  543 (552)
                      ++++.+|. .+..+++|++|++++|++++.+|.. ..+++|+.+++++|+ +.|
T Consensus       255 ~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~  306 (313)
T 1ogq_A          255 RIYGTLPQ-GLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             CCEECCCG-GGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred             cccCcCCh-HHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence            99888888 7888999999999999999888865 778889999999997 665

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=8.8e-32  Score=286.06  Aligned_cols=312  Identities=20%  Similarity=0.220  Sum_probs=257.1

Q ss_pred             CCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCCCCCCEEeCCCCcCCCCcchhhhcCCC
Q 047285          150 LENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSL  229 (552)
Q Consensus       150 l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~  229 (552)
                      +.+++.+++++|.+....+..+.++++|++|++++|.++.++..     .+..+++|++|++++|.+.+.  .+..+..+
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~-----~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l  122 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTY-----AFAYAHTIQKLYMGFNAIRYL--PPHVFQNV  122 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTT-----TTTTCTTCCEEECCSSCCCCC--CTTTTTTC
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChH-----HhcCCCCCCEEECCCCcCCCC--CHHHHcCC
Confidence            67899999999999865555678999999999999988776532     378899999999999998873  34567889


Q ss_pred             CCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCCccEEeccCccccccCchhhhcccCCcE
Q 047285          230 PSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRH  309 (552)
Q Consensus       230 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~  309 (552)
                      ++|++|++++|.+.+.++..+.++++|+.|++++|.+.+..+.   .+..+++|++|++++|.+++.   .+..+++|+.
T Consensus       123 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~  196 (597)
T 3oja_B          123 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD---TFQATTSLQNLQLSSNRLTHV---DLSLIPSLFH  196 (597)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT---TTTTCTTCCEEECTTSCCSBC---CGGGCTTCSE
T ss_pred             CCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChh---hhhcCCcCcEEECcCCCCCCc---Chhhhhhhhh
Confidence            9999999999999988888889999999999999999888777   778889999999999988864   2566788999


Q ss_pred             EeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCCCCCCCCCchhHhhcccCceeecccc
Q 047285          310 LDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLI  389 (552)
Q Consensus       310 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~  389 (552)
                      |++++|.+++.     ...++|+.|++++|.+.. ++..   ..++|+.|++++|. +++  +..+..+           
T Consensus       197 L~l~~n~l~~l-----~~~~~L~~L~ls~n~l~~-~~~~---~~~~L~~L~L~~n~-l~~--~~~l~~l-----------  253 (597)
T 3oja_B          197 ANVSYNLLSTL-----AIPIAVEELDASHNSINV-VRGP---VNVELTILKLQHNN-LTD--TAWLLNY-----------  253 (597)
T ss_dssp             EECCSSCCSEE-----ECCTTCSEEECCSSCCCE-EECS---CCSCCCEEECCSSC-CCC--CGGGGGC-----------
T ss_pred             hhcccCccccc-----cCCchhheeeccCCcccc-cccc---cCCCCCEEECCCCC-CCC--ChhhccC-----------
Confidence            99999887653     344688999999998874 3332   23688999999987 654  2334433           


Q ss_pred             cCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCC
Q 047285          390 DLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLN  469 (552)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  469 (552)
                                        ++|++|++++|.+++..|..+..+++|+.|+|++|++++ +|..+..+++|+.|++++|.++
T Consensus       254 ------------------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~  314 (597)
T 3oja_B          254 ------------------PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL  314 (597)
T ss_dssp             ------------------TTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC
T ss_pred             ------------------CCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC
Confidence                              389999999999999889999999999999999999985 6777788999999999999998


Q ss_pred             ccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEc
Q 047285          470 GFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKF  521 (552)
Q Consensus       470 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~  521 (552)
                       .+|..+..+++|++|++++|++++. +   +..+++|+.|++++|++.+..
T Consensus       315 -~i~~~~~~l~~L~~L~L~~N~l~~~-~---~~~~~~L~~L~l~~N~~~~~~  361 (597)
T 3oja_B          315 -HVERNQPQFDRLENLYLDHNSIVTL-K---LSTHHTLKNLTLSHNDWDCNS  361 (597)
T ss_dssp             -CCGGGHHHHTTCSEEECCSSCCCCC-C---CCTTCCCSEEECCSSCEEHHH
T ss_pred             -ccCcccccCCCCCEEECCCCCCCCc-C---hhhcCCCCEEEeeCCCCCChh
Confidence             6888888899999999999998653 3   567889999999999988664

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=100.00  E-value=6.3e-33  Score=272.02  Aligned_cols=275  Identities=18%  Similarity=0.216  Sum_probs=199.6

Q ss_pred             CCCcHHHHHHHHHhHhcC-CCCCCCCCCCC---CCCCCCcccCceEecC--------CCCcEEEEEcCCCCccCCCCchh
Q 047285           35 VGCIDSEREALLKLKQDL-IDPSNRLASWN---TGDGDCCKWAGVFCSN--------ITGHVLQLSLQNPFSYLGGDLRE  102 (552)
Q Consensus        35 ~~~~~~~~~~l~~~~~~~-~~~~~~~~~W~---~~~~~~c~w~gv~c~~--------~~~~v~~L~l~~~~~~~~~~l~~  102 (552)
                      ..+..+|++||++||+++ .++.++..+|.   ....++|.|.|+.|+.        ...+|+.|++++.          
T Consensus        22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n----------   91 (328)
T 4fcg_A           22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSV----------   91 (328)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESS----------
T ss_pred             cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCC----------
Confidence            457788999999999988 46667778894   3357899999999952        3478999999883          


Q ss_pred             hcccCccccCccccccCccccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEec
Q 047285          103 VKAGSNYERSKLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDL  182 (552)
Q Consensus       103 l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l  182 (552)
                                .+. .+|+.++++++|++|++++|.++  .+|..++.+++|++|++++|+++ .+|..++++++|++|++
T Consensus        92 ----------~l~-~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           92 ----------PLP-QFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI  157 (328)
T ss_dssp             ----------CCS-SCCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred             ----------Cch-hcChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence                      555 77888999999999999999998  58999999999999999999998 78999999999999999


Q ss_pred             cCCC-CCCCccccCC---ccccCCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCce
Q 047285          183 SGTF-LSNYDLHVDS---LSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKA  258 (552)
Q Consensus       183 ~~n~-l~~~~~~~~~---~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  258 (552)
                      ++|. ++.+|.....   ...+..+++|++|++++|.++.   ++..+..+++|++|++++|.+.+.++ .+..+++|++
T Consensus       158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~---lp~~l~~l~~L~~L~L~~N~l~~l~~-~l~~l~~L~~  233 (328)
T 4fcg_A          158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS---LPASIANLQNLKSLKIRNSPLSALGP-AIHHLPKLEE  233 (328)
T ss_dssp             EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCC---CCGGGGGCTTCCEEEEESSCCCCCCG-GGGGCTTCCE
T ss_pred             CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCc---chHhhcCCCCCCEEEccCCCCCcCch-hhccCCCCCE
Confidence            9864 4444432110   0113447777777777777764   34456667777777777777765433 4666666666


Q ss_pred             eecCCCCCCCCCccccccccCCCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccC
Q 047285          259 LHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAW  338 (552)
Q Consensus       259 L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~  338 (552)
                      |++++|.+.+.++.   .+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+.++++|+.+++..
T Consensus       234 L~Ls~n~~~~~~p~---~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~  310 (328)
T 4fcg_A          234 LDLRGCTALRNYPP---IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP  310 (328)
T ss_dssp             EECTTCTTCCBCCC---CTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred             EECcCCcchhhhHH---HhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence            66666666666655   556666666666666666666666666666666666666666666666666666666666554


Q ss_pred             cc
Q 047285          339 NS  340 (552)
Q Consensus       339 n~  340 (552)
                      +.
T Consensus       311 ~~  312 (328)
T 4fcg_A          311 HL  312 (328)
T ss_dssp             GG
T ss_pred             HH
Confidence            43

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.98  E-value=4.2e-35  Score=302.67  Aligned_cols=386  Identities=20%  Similarity=0.142  Sum_probs=259.6

Q ss_pred             CCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCC----CCccccCCCCCCCEEeccCCCCCCCccccCCccccC
Q 047285          126 KHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAG----MIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLS  201 (552)
Q Consensus       126 ~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~----~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~  201 (552)
                      ++|++|+++++.++.......+..+++|++|++++|++++    .++..+..+++|++|++++|.++.....    ....
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~----~l~~   78 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVH----CVLQ   78 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHH----HHHH
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHH----HHHH
Confidence            5678888888888754334446778888888888888764    3466677888888888888876542110    0012


Q ss_pred             CCC----CCCEEeCCCCcCCCC--cchhhhcCCCCCCCEEEcCCCCCCCCCCCcc-----cCCCCCceeecCCCCCCCCC
Q 047285          202 GLY----MLEHLDLSQMNLSKA--SDWLLVTNSLPSLKVLKLTKCQLCHFPPLLS-----ANFSSLKALHLAINNFDNSL  270 (552)
Q Consensus       202 ~l~----~L~~L~ls~n~~~~~--~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-----~~l~~L~~L~l~~n~~~~~~  270 (552)
                      .++    +|++|++++|.+...  ..++..+..+++|++|++++|.+.+..+..+     ...++|++|++++|.+++..
T Consensus        79 ~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~  158 (461)
T 1z7x_W           79 GLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS  158 (461)
T ss_dssp             TTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred             HHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH
Confidence            233    688888888887753  2456777888899999999888765433222     23457899999988887643


Q ss_pred             cc-ccccccCCCCccEEeccCccccccCchhhhc-----ccCCcEEeccCCCCCCC----CCccCCCCCCCCEEEccCcc
Q 047285          271 FQ-YGSWVFGLRNLVFIDLSSNQFQGQIPIGLRN-----LTSLRHLDLRFNYFNST----TPGWLSKFNDLEFLSVAWNS  340 (552)
Q Consensus       271 ~~-~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~-----l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~  340 (552)
                      .. ....+..+++|++|++++|.+.+..+..+..     .++|++|++++|.+++.    ++..+..+++|++|++++|.
T Consensus       159 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~  238 (461)
T 1z7x_W          159 CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK  238 (461)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB
T ss_pred             HHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc
Confidence            21 1124566789999999999887654444432     56899999999988764    35666778899999999998


Q ss_pred             ceeec----CccccCCCCccCEEeCCCCCCCCCC----CchhHhhcccCceeecccccCCCCCccccccccccCCCCCCE
Q 047285          341 LQGTI----SSVGLENLTSIETLDLSGNSKLGGK----IPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALES  412 (552)
Q Consensus       341 l~~~~----~~~~l~~l~~L~~L~l~~n~~l~~~----~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~  412 (552)
                      +.+..    ....+..+++|+.|++++|. +++.    ++..+..++                             +|++
T Consensus       239 l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~-----------------------------~L~~  288 (461)
T 1z7x_W          239 LGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCRVLRAKE-----------------------------SLKE  288 (461)
T ss_dssp             CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCT-----------------------------TCCE
T ss_pred             CChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHHHHHhhCC-----------------------------Ccce
Confidence            76432    12223467899999999997 6643    344444444                             6777


Q ss_pred             EEccCCcCcccCchhhcC-----CCCCcEEECCCCcccCC----CcccccCCCCCCEEeCCCCcCCccCcccccC-----
Q 047285          413 LDLSICQISGHLTNQLLQ-----FKSLHTLELGHNSLFGP----LPPALGELSSLKKLDLSNNMLNGFIPLSLGK-----  478 (552)
Q Consensus       413 L~ls~n~~~~~~~~~l~~-----l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-----  478 (552)
                      |++++|.+++..+..+..     .++|++|++++|.+++.    ++..+..+++|++|++++|.+++..+..+..     
T Consensus       289 L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~  368 (461)
T 1z7x_W          289 LSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQP  368 (461)
T ss_dssp             EECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTST
T ss_pred             EECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCC
Confidence            888887776544443332     25788888888877754    4555666778888888888776544433321     


Q ss_pred             CCCCCeeeCCCcccce----ecCHHhhhcCCCCCEEEccCCeeeEEcCCCCc-----CcccccEEecCCCCCCCCCC
Q 047285          479 LSHLEYLDLSNNKLNA----SLSEIHFVNLTKLTWFSASGNSLILKFNPNWV-----PPFQLETLQLRSCHLGPHFP  546 (552)
Q Consensus       479 l~~L~~L~L~~n~l~~----~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-----~~~~L~~L~l~~n~~~~~iP  546 (552)
                      .++|++|++++|++++    .++. .+..+++|++|++++|++.+.....+.     ...+|+.|++.++.+....+
T Consensus       369 ~~~L~~L~L~~n~i~~~~~~~l~~-~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~  444 (461)
T 1z7x_W          369 GSVLRVLWLADCDVSDSSCSSLAA-TLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEME  444 (461)
T ss_dssp             TCCCCEEECTTSCCCHHHHHHHHH-HHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHH
T ss_pred             CCceEEEECCCCCCChhhHHHHHH-HHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHH
Confidence            5678888888888765    5666 577788888888888877644111111     12357777777766654333

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=3.7e-30  Score=253.49  Aligned_cols=288  Identities=20%  Similarity=0.213  Sum_probs=176.2

Q ss_pred             CCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCCCCC
Q 047285          127 HLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYML  206 (552)
Q Consensus       127 ~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L  206 (552)
                      ++++++++++.++  .+|..+.  ++|++|++++|++.+..|..+.++++|++|++++|.++.++..     .+..+++|
T Consensus        34 ~l~~l~~~~~~l~--~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-----~~~~l~~L  104 (332)
T 2ft3_A           34 HLRVVQCSDLGLK--AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEK-----AFSPLRKL  104 (332)
T ss_dssp             ETTEEECCSSCCS--SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGG-----GSTTCTTC
T ss_pred             cCCEEECCCCCcc--ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHh-----HhhCcCCC
Confidence            6899999999888  5777664  6899999999999876677889999999999999887765322     26777888


Q ss_pred             CEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCC--CCccccccccCCCCcc
Q 047285          207 EHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDN--SLFQYGSWVFGLRNLV  284 (552)
Q Consensus       207 ~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~~~~l~~L~  284 (552)
                      ++|++++|.+...+   ..+.  ++|++|++++|.+.+.++..+..+++|+.|++++|.++.  ..+.   .+..+ +|+
T Consensus       105 ~~L~L~~n~l~~l~---~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~~~l-~L~  175 (332)
T 2ft3_A          105 QKLYISKNHLVEIP---PNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPG---AFDGL-KLN  175 (332)
T ss_dssp             CEEECCSSCCCSCC---SSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTT---SSCSC-CCS
T ss_pred             CEEECCCCcCCccC---cccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcc---cccCC-ccC
Confidence            88888888776532   2222  677777777777776666666666666666666666542  2222   33333 555


Q ss_pred             EEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCC
Q 047285          285 FIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGN  364 (552)
Q Consensus       285 ~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n  364 (552)
                      +|++++|.+++ +|..+.  ++|++|++++|.+++..+..                         +..+++|+.|++++|
T Consensus       176 ~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~-------------------------l~~l~~L~~L~L~~N  227 (332)
T 2ft3_A          176 YLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELED-------------------------LLRYSKLYRLGLGHN  227 (332)
T ss_dssp             CCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTS-------------------------STTCTTCSCCBCCSS
T ss_pred             EEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHH-------------------------hcCCCCCCEEECCCC
Confidence            55555555543 333222  44555555555544444444                         444555555555555


Q ss_pred             CCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcc
Q 047285          365 SKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSL  444 (552)
Q Consensus       365 ~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l  444 (552)
                      . +++..+..+..++                             +|++|++++|.++ .+|..+..+++|+.|++++|++
T Consensus       228 ~-l~~~~~~~~~~l~-----------------------------~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l  276 (332)
T 2ft3_A          228 Q-IRMIENGSLSFLP-----------------------------TLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNI  276 (332)
T ss_dssp             C-CCCCCTTGGGGCT-----------------------------TCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCC
T ss_pred             c-CCcCChhHhhCCC-----------------------------CCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCC
Confidence            4 4443333333333                             4555555555555 4455555666666666666666


Q ss_pred             cCCCcccccC------CCCCCEEeCCCCcCC--ccCcccccCCCCCCeeeCCCcc
Q 047285          445 FGPLPPALGE------LSSLKKLDLSNNMLN--GFIPLSLGKLSHLEYLDLSNNK  491 (552)
Q Consensus       445 ~~~~~~~l~~------l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~  491 (552)
                      ++..+..+..      .++|+.|++++|++.  +..|..+..+++|+.+++++|+
T Consensus       277 ~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          277 TKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             CccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            5444444433      355677777777765  4455666777777777777664

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=2.4e-29  Score=247.51  Aligned_cols=290  Identities=21%  Similarity=0.229  Sum_probs=146.0

Q ss_pred             CCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCCCCC
Q 047285          127 HLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYML  206 (552)
Q Consensus       127 ~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L  206 (552)
                      ++++++++++.++  .+|..+.  ++|++|++++|++++..+..++++++|++|++++|.++.+...     .+..+++|
T Consensus        32 ~l~~l~~~~~~l~--~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-----~~~~l~~L  102 (330)
T 1xku_A           32 HLRVVQCSDLGLE--KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPG-----AFAPLVKL  102 (330)
T ss_dssp             ETTEEECTTSCCC--SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTT-----TTTTCTTC
T ss_pred             CCeEEEecCCCcc--ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHH-----HhcCCCCC
Confidence            6788888888877  4676553  6788888888888866566778888888888887776654211     14445555


Q ss_pred             CEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCCccEE
Q 047285          207 EHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFI  286 (552)
Q Consensus       207 ~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L  286 (552)
                      ++|++++|.++..+   ..+  .++|++|++++|.+.+..+.                           .+..+++|++|
T Consensus       103 ~~L~Ls~n~l~~l~---~~~--~~~L~~L~l~~n~l~~~~~~---------------------------~~~~l~~L~~L  150 (330)
T 1xku_A          103 ERLYLSKNQLKELP---EKM--PKTLQELRVHENEITKVRKS---------------------------VFNGLNQMIVV  150 (330)
T ss_dssp             CEEECCSSCCSBCC---SSC--CTTCCEEECCSSCCCBBCHH---------------------------HHTTCTTCCEE
T ss_pred             CEEECCCCcCCccC---hhh--cccccEEECCCCcccccCHh---------------------------HhcCCccccEE
Confidence            55555555443311   110  12333333333333322222                           23333444444


Q ss_pred             eccCccccc--cCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCC
Q 047285          287 DLSSNQFQG--QIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGN  364 (552)
Q Consensus       287 ~L~~n~~~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n  364 (552)
                      ++++|.+..  ..+..+..+++|++|++++|.++.                         +|.. +  .++|++|++++|
T Consensus       151 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-------------------------l~~~-~--~~~L~~L~l~~n  202 (330)
T 1xku_A          151 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-------------------------IPQG-L--PPSLTELHLDGN  202 (330)
T ss_dssp             ECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-------------------------CCSS-C--CTTCSEEECTTS
T ss_pred             ECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-------------------------CCcc-c--cccCCEEECCCC
Confidence            444443321  223334444444444444444432                         2222 1  144455555555


Q ss_pred             CCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcc
Q 047285          365 SKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSL  444 (552)
Q Consensus       365 ~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l  444 (552)
                      . +++..+..+..++                             +|++|++++|.+++..+..+..+++|++|++++|++
T Consensus       203 ~-l~~~~~~~~~~l~-----------------------------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l  252 (330)
T 1xku_A          203 K-ITKVDAASLKGLN-----------------------------NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL  252 (330)
T ss_dssp             C-CCEECTGGGTTCT-----------------------------TCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCC
T ss_pred             c-CCccCHHHhcCCC-----------------------------CCCEEECCCCcCceeChhhccCCCCCCEEECCCCcC
Confidence            4 4433333333332                             455555555555544444555555555555555555


Q ss_pred             cCCCcccccCCCCCCEEeCCCCcCCccCcccccC------CCCCCeeeCCCcccce-ecCHHhhhcCCCCCEEEccCCe
Q 047285          445 FGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGK------LSHLEYLDLSNNKLNA-SLSEIHFVNLTKLTWFSASGNS  516 (552)
Q Consensus       445 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~------l~~L~~L~L~~n~l~~-~~~~~~~~~l~~L~~L~L~~n~  516 (552)
                      + .+|..+..+++|++|++++|++++..+..+..      .+.++.+++++|++.. .++...+..++.++.+++++|+
T Consensus       253 ~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          253 V-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             S-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             c-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence            5 45555555555555555555555433333321      2556666666666532 2222256666666666666653

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=2.1e-29  Score=247.87  Aligned_cols=225  Identities=20%  Similarity=0.242  Sum_probs=160.4

Q ss_pred             ccCCCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCcccee--ecCccccCCCC
Q 047285          277 VFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQG--TISSVGLENLT  354 (552)
Q Consensus       277 ~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~~l~~l~  354 (552)
                      +..+++|++|++++|.++ .+|..+.  ++|++|++++|.+++..+..+.++++|++|++++|.+..  ..+. .+..++
T Consensus        96 ~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~l~  171 (330)
T 1xku_A           96 FAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG-AFQGMK  171 (330)
T ss_dssp             TTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTT-GGGGCT
T ss_pred             hcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChh-hccCCC
Confidence            333444444444444443 2232222  455555555555555444455555666666666665542  2333 377888


Q ss_pred             ccCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCC
Q 047285          355 SIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSL  434 (552)
Q Consensus       355 ~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L  434 (552)
                      +|+.|++++|. ++. +|..+                               .++|++|++++|.+++..+..+..+++|
T Consensus       172 ~L~~L~l~~n~-l~~-l~~~~-------------------------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L  218 (330)
T 1xku_A          172 KLSYIRIADTN-ITT-IPQGL-------------------------------PPSLTELHLDGNKITKVDAASLKGLNNL  218 (330)
T ss_dssp             TCCEEECCSSC-CCS-CCSSC-------------------------------CTTCSEEECTTSCCCEECTGGGTTCTTC
T ss_pred             CcCEEECCCCc-ccc-CCccc-------------------------------cccCCEEECCCCcCCccCHHHhcCCCCC
Confidence            99999999997 542 33211                               1379999999999999889999999999


Q ss_pred             cEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhc------CCCCC
Q 047285          435 HTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVN------LTKLT  508 (552)
Q Consensus       435 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~------l~~L~  508 (552)
                      ++|++++|++++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|++++..+. .+..      .+.++
T Consensus       219 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~-~f~~~~~~~~~~~l~  296 (330)
T 1xku_A          219 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSN-DFCPPGYNTKKASYS  296 (330)
T ss_dssp             CEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTT-SSSCSSCCTTSCCCS
T ss_pred             CEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChh-hcCCccccccccccc
Confidence            99999999999877778999999999999999998 7898999999999999999999664443 4533      47899


Q ss_pred             EEEccCCeeeE--EcCCCCcCcccccEEecCCCC
Q 047285          509 WFSASGNSLIL--KFNPNWVPPFQLETLQLRSCH  540 (552)
Q Consensus       509 ~L~L~~n~~~~--~~~~~~~~~~~L~~L~l~~n~  540 (552)
                      .+++++|++..  ..|..+..+.+++.+++++|+
T Consensus       297 ~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          297 GVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             EEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             ceEeecCcccccccCccccccccceeEEEecccC
Confidence            99999999863  345667778899999999985

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=1.9e-29  Score=248.44  Aligned_cols=289  Identities=19%  Similarity=0.198  Sum_probs=208.1

Q ss_pred             CCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCCCCCCEEeCCCCcCCCCcchhhhcCCCCC
Q 047285          152 NLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPS  231 (552)
Q Consensus       152 ~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~  231 (552)
                      +|++++++++.++ .+|..+.  ++|++|++++|.++.++                               +..+..+++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~-------------------------------~~~~~~l~~   79 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELR-------------------------------KDDFKGLQH   79 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEEC-------------------------------TTTTTTCTT
T ss_pred             cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccC-------------------------------HhHhhCCCC
Confidence            5677777777765 4555442  56666666666555432                               223344555


Q ss_pred             CCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCCccEEeccCccccccCchhhhcccCCcEEe
Q 047285          232 LKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLD  311 (552)
Q Consensus       232 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~  311 (552)
                      |++|++++|.+.+..+..+.++++|++|++++|.++.. +.   .+.  ++|++|++++|.+.+..+..+..+++|++|+
T Consensus        80 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~---~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~  153 (332)
T 2ft3_A           80 LYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEI-PP---NLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIE  153 (332)
T ss_dssp             CCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSC-CS---SCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEE
T ss_pred             CcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCcc-Cc---ccc--ccCCEEECCCCccCccCHhHhCCCccCCEEE
Confidence            55555555555555555555566666666666655522 22   222  6788888888887765566678888888888


Q ss_pred             ccCCCCCC--CCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCCCCCCCCCchhHhhcccCceeecccc
Q 047285          312 LRFNYFNS--TTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLI  389 (552)
Q Consensus       312 l~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~  389 (552)
                      +++|.++.  ..+..+..+ +|++|++++|.+++ +|.. +.  ++|++|++++|. +++..+..+..++          
T Consensus       154 l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~-~~--~~L~~L~l~~n~-i~~~~~~~l~~l~----------  217 (332)
T 2ft3_A          154 MGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKD-LP--ETLNELHLDHNK-IQAIELEDLLRYS----------  217 (332)
T ss_dssp             CCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSS-SC--SSCSCCBCCSSC-CCCCCTTSSTTCT----------
T ss_pred             CCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcc-cc--CCCCEEECCCCc-CCccCHHHhcCCC----------
Confidence            88888753  566677777 88899999988874 5554 32  789999999998 7766655555554          


Q ss_pred             cCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCC
Q 047285          390 DLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLN  469 (552)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  469 (552)
                                         +|++|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|+++
T Consensus       218 -------------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~  277 (332)
T 2ft3_A          218 -------------------KLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT  277 (332)
T ss_dssp             -------------------TCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCC
T ss_pred             -------------------CCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCC
Confidence                               8999999999999888888999999999999999998 88888999999999999999998


Q ss_pred             ccCcccccC------CCCCCeeeCCCcccce-ecCHHhhhcCCCCCEEEccCCe
Q 047285          470 GFIPLSLGK------LSHLEYLDLSNNKLNA-SLSEIHFVNLTKLTWFSASGNS  516 (552)
Q Consensus       470 ~~~~~~~~~------l~~L~~L~L~~n~l~~-~~~~~~~~~l~~L~~L~L~~n~  516 (552)
                      +..+..+..      .++|+.|++++|++.. .++...+..+++|+.+++++|+
T Consensus       278 ~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          278 KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             BCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             ccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            665555544      4679999999999862 3444478999999999999885

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=1.6e-33  Score=290.90  Aligned_cols=389  Identities=21%  Similarity=0.150  Sum_probs=286.3

Q ss_pred             cEEEEEcCCCCccCCCCchhhcccCccccCccccccC-ccccCCCCCCEEeCCCCcCCCC---ccCcccCCCCCCCEEeC
Q 047285           83 HVLQLSLQNPFSYLGGDLREVKAGSNYERSKLGGKVN-PSLVDLKHLIHLDLSGNDFEGI---QIPKYLGSLENLRYLNL  158 (552)
Q Consensus        83 ~v~~L~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~-~~l~~l~~L~~L~Ls~n~~~~~---~~p~~~~~l~~L~~L~L  158 (552)
                      +++.|++++.                    .++.... ..+..+++|++|++++|.+.+.   .++..+..+++|++|++
T Consensus         4 ~l~~L~Ls~~--------------------~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L   63 (461)
T 1z7x_W            4 DIQSLDIQCE--------------------ELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL   63 (461)
T ss_dssp             EEEEEEEESC--------------------CCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEEC
T ss_pred             cceehhhhhc--------------------ccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeC
Confidence            5788888763                    4444332 3377899999999999998742   25677888999999999


Q ss_pred             CCCcCCCCCcccc-CCCC----CCCEEeccCCCCCCCccccCCccccCCCCCCCEEeCCCCcCCCC--cchhhh-cCCCC
Q 047285          159 SGAKFAGMIPLQL-GNLS----NLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKA--SDWLLV-TNSLP  230 (552)
Q Consensus       159 ~~~~~~~~lp~~l-~~l~----~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~--~~~~~~-~~~~~  230 (552)
                      ++|.+.+..+..+ ..++    +|++|++++|.++..... .-...+..+++|++|++++|.+...  ..+... ....+
T Consensus        64 s~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~-~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~  142 (461)
T 1z7x_W           64 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG-VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQC  142 (461)
T ss_dssp             TTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH-HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTC
T ss_pred             CCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHH-HHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCC
Confidence            9999876444333 3344    799999999987642200 0012478899999999999997652  112222 33467


Q ss_pred             CCCEEEcCCCCCCCCC----CCcccCCCCCceeecCCCCCCCCCcccccccc-----CCCCccEEeccCcccccc----C
Q 047285          231 SLKVLKLTKCQLCHFP----PLLSANFSSLKALHLAINNFDNSLFQYGSWVF-----GLRNLVFIDLSSNQFQGQ----I  297 (552)
Q Consensus       231 ~L~~L~l~~n~~~~~~----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-----~l~~L~~L~L~~n~~~~~----~  297 (552)
                      +|++|++++|.+++..    +..+..+++|+.|++++|.+.+....   .+.     ..++|++|++++|.+++.    +
T Consensus       143 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~---~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  219 (461)
T 1z7x_W          143 RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVR---VLCQGLKDSPCQLEALKLESCGVTSDNCRDL  219 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHH---HHHHHHHHSCCCCCEEECTTSCCBTTHHHHH
T ss_pred             cceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHH---HHHHHHhcCCCCceEEEccCCCCcHHHHHHH
Confidence            8999999999988754    45566789999999999998765433   222     356999999999999864    5


Q ss_pred             chhhhcccCCcEEeccCCCCCCCC-----CccCCCCCCCCEEEccCccceee----cCccccCCCCccCEEeCCCCCCCC
Q 047285          298 PIGLRNLTSLRHLDLRFNYFNSTT-----PGWLSKFNDLEFLSVAWNSLQGT----ISSVGLENLTSIETLDLSGNSKLG  368 (552)
Q Consensus       298 ~~~l~~l~~L~~L~l~~n~l~~~~-----~~~l~~l~~L~~L~l~~n~l~~~----~~~~~l~~l~~L~~L~l~~n~~l~  368 (552)
                      +..+..+++|++|++++|.+++..     +..+..+++|++|++++|.+++.    ++.. +..+++|++|++++|. ++
T Consensus       220 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~-l~~~~~L~~L~Ls~n~-i~  297 (461)
T 1z7x_W          220 CGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV-LRAKESLKELSLAGNE-LG  297 (461)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH-HHHCTTCCEEECTTCC-CH
T ss_pred             HHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHH-HhhCCCcceEECCCCC-Cc
Confidence            777888999999999999987543     23344689999999999998853    4444 6678999999999997 76


Q ss_pred             CCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCccc----CchhhcCCCCCcEEECCCCcc
Q 047285          369 GKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGH----LTNQLLQFKSLHTLELGHNSL  444 (552)
Q Consensus       369 ~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~----~~~~l~~l~~L~~L~L~~n~l  444 (552)
                      +..+..+...-                        ....++|++|++++|.+++.    ++..+..+++|++|++++|++
T Consensus       298 ~~~~~~l~~~l------------------------~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i  353 (461)
T 1z7x_W          298 DEGARLLCETL------------------------LEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRL  353 (461)
T ss_dssp             HHHHHHHHHHH------------------------TSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBC
T ss_pred             hHHHHHHHHHh------------------------ccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcc
Confidence            55555554431                        01123799999999998865    456677789999999999998


Q ss_pred             cCCCcccccC-----CCCCCEEeCCCCcCCc----cCcccccCCCCCCeeeCCCcccceecCHHh---h-hcCCCCCEEE
Q 047285          445 FGPLPPALGE-----LSSLKKLDLSNNMLNG----FIPLSLGKLSHLEYLDLSNNKLNASLSEIH---F-VNLTKLTWFS  511 (552)
Q Consensus       445 ~~~~~~~l~~-----l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~-~~l~~L~~L~  511 (552)
                      ++..+..+..     .++|++|++++|.+++    .+|..+..+++|++|++++|++++.-....   + ....+|+.|+
T Consensus       354 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~  433 (461)
T 1z7x_W          354 EDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLV  433 (461)
T ss_dssp             HHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEE
T ss_pred             ccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhhee
Confidence            8654444432     6799999999999986    678888889999999999999876422211   1 1245788888


Q ss_pred             ccCCeeeEEc
Q 047285          512 ASGNSLILKF  521 (552)
Q Consensus       512 L~~n~~~~~~  521 (552)
                      +.++.+....
T Consensus       434 ~~~~~~~~~~  443 (461)
T 1z7x_W          434 LYDIYWSEEM  443 (461)
T ss_dssp             CTTCCCCHHH
T ss_pred             ecccccCHHH
Confidence            8887766443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=5.8e-33  Score=295.99  Aligned_cols=386  Identities=14%  Similarity=0.092  Sum_probs=186.8

Q ss_pred             CCCCCCEEeCCCCcCCCCccCcccCC-CCC-CCEEeCCCCc-CCC-CCccccCCCCCCCEEeccCCCCCCCccccCCcc-
Q 047285          124 DLKHLIHLDLSGNDFEGIQIPKYLGS-LEN-LRYLNLSGAK-FAG-MIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLS-  198 (552)
Q Consensus       124 ~l~~L~~L~Ls~n~~~~~~~p~~~~~-l~~-L~~L~L~~~~-~~~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~-  198 (552)
                      .+++|++|+|++|.+++ ..+..++. +++ |++|++++|. ++. .++....++++|++|++++|.+++....  .++ 
T Consensus       110 ~~~~L~~L~L~~~~i~~-~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~--~l~~  186 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSD-LDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGK--WLHE  186 (592)
T ss_dssp             HCTTCCEEEEESCBCCH-HHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSH--HHHH
T ss_pred             hCCCCCeEEeeccEecH-HHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchh--HHHH
Confidence            56666666666665554 23333433 233 6666666664 110 1222233566666666666654332100  011 


Q ss_pred             ccCCCCCCCEEeCCCCcCCCC--cchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCcccccc
Q 047285          199 WLSGLYMLEHLDLSQMNLSKA--SDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSW  276 (552)
Q Consensus       199 ~l~~l~~L~~L~ls~n~~~~~--~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~  276 (552)
                      .+..+++|++|++++|.+.+.  ..++..+.++++|++|++++|.+.+ .+..+..+++|+.|+++..............
T Consensus       187 ~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  265 (592)
T 3ogk_B          187 LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMN  265 (592)
T ss_dssp             HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSC
T ss_pred             HHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHH
Confidence            123456666666666666522  2344444556666666666666554 2345556666666666543222111111124


Q ss_pred             ccCCCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCC-ccCCCCCCCCEEEccCccceeecCccccCCCCc
Q 047285          277 VFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTP-GWLSKFNDLEFLSVAWNSLQGTISSVGLENLTS  355 (552)
Q Consensus       277 ~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~  355 (552)
                      +..+++|+.++++++.. +.+|..+..+++|++|++++|.+++... ..+..+++|++|+++ +.+.+.........+++
T Consensus       266 l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~  343 (592)
T 3ogk_B          266 LVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQ  343 (592)
T ss_dssp             CCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTT
T ss_pred             hhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCC
Confidence            55566666666666432 2455556666667777776666543322 224566666666666 33322221221345566


Q ss_pred             cCEEeCCC----------CCCCCCC-CchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEcc----CCcC
Q 047285          356 IETLDLSG----------NSKLGGK-IPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLS----ICQI  420 (552)
Q Consensus       356 L~~L~l~~----------n~~l~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls----~n~~  420 (552)
                      |++|++++          |..+++. ++.....+++|+.+++............+    ...+++|++|+++    .|.+
T Consensus       344 L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l----~~~~~~L~~L~l~~~~~~n~l  419 (592)
T 3ogk_B          344 LKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESI----GTYLKNLCDFRLVLLDREERI  419 (592)
T ss_dssp             CCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHH----HHHCCSCCEEEEEECSCCSCC
T ss_pred             CCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHH----HhhCCCCcEEEEeecCCCccc
Confidence            66666663          3223322 22223345555555553222221111100    0123456666654    3444


Q ss_pred             ccc-----CchhhcCCCCCcEEECCCCc--ccCCCccccc-CCCCCCEEeCCCCcCCc-cCcccccCCCCCCeeeCCCcc
Q 047285          421 SGH-----LTNQLLQFKSLHTLELGHNS--LFGPLPPALG-ELSSLKKLDLSNNMLNG-FIPLSLGKLSHLEYLDLSNNK  491 (552)
Q Consensus       421 ~~~-----~~~~l~~l~~L~~L~L~~n~--l~~~~~~~l~-~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~  491 (552)
                      ++.     ++..+..+++|+.|++++|.  +++..+..+. .+++|++|++++|++++ .++..+.++++|++|+|++|+
T Consensus       420 ~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~  499 (592)
T 3ogk_B          420 TDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC  499 (592)
T ss_dssp             SSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred             cCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC
Confidence            432     22234445566666665432  3333222222 35556666666665543 233344555566666666665


Q ss_pred             cceecCHHhhhcCCCCCEEEccCCeeeE
Q 047285          492 LNASLSEIHFVNLTKLTWFSASGNSLIL  519 (552)
Q Consensus       492 l~~~~~~~~~~~l~~L~~L~L~~n~~~~  519 (552)
                      +++......+..+++|++|++++|+++.
T Consensus       500 l~~~~~~~~~~~l~~L~~L~ls~n~it~  527 (592)
T 3ogk_B          500 FSERAIAAAVTKLPSLRYLWVQGYRASM  527 (592)
T ss_dssp             CBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred             CcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence            5443222134455666666666666543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=6.9e-28  Score=234.47  Aligned_cols=263  Identities=22%  Similarity=0.304  Sum_probs=192.7

Q ss_pred             CCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCC--ccccccccCCCCccEEeccCccccccCchhhhcccCC
Q 047285          230 PSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSL--FQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSL  307 (552)
Q Consensus       230 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L  307 (552)
                      ++|++|++++|.+...++..+.++++|++|++++|.+....  +.   .+..+++|++|++++|.+. .+|..+..+++|
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L  103 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQ---SDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQL  103 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEH---HHHSCSCCCEEECCSCSEE-EEEEEEETCTTC
T ss_pred             CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccc---ccccccccCEEECCCCccc-cChhhcCCCCCC
Confidence            46777777777777666666777777888888777766331  22   4556788888888888877 456667788888


Q ss_pred             cEEeccCCCCCCCCC-ccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCCCCCCC-CCchhHhhcccCceee
Q 047285          308 RHLDLRFNYFNSTTP-GWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGG-KIPTSFARLCKLTSVD  385 (552)
Q Consensus       308 ~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~-~~~~~~~~l~~L~~l~  385 (552)
                      ++|++++|.+++..+ ..+..+++|++|++++|.+.+..+.. +..+++|++|++++|. +.+ .+|..+..+       
T Consensus       104 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l-------  174 (306)
T 2z66_A          104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI-FNGLSSLEVLKMAGNS-FQENFLPDIFTEL-------  174 (306)
T ss_dssp             CEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTT-TTTCTTCCEEECTTCE-EGGGEECSCCTTC-------
T ss_pred             CEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhh-cccCcCCCEEECCCCc-cccccchhHHhhC-------
Confidence            888888888877655 56778888888888888887655554 7788888888888887 544 344444333       


Q ss_pred             cccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCC
Q 047285          386 LSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSN  465 (552)
Q Consensus       386 l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  465 (552)
                                            ++|++|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|++|++++
T Consensus       175 ----------------------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  232 (306)
T 2z66_A          175 ----------------------RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL  232 (306)
T ss_dssp             ----------------------TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTT
T ss_pred             ----------------------cCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCC
Confidence                                  3788888888888887788888888888888888888876666788888888888888


Q ss_pred             CcCCccCcccccCCC-CCCeeeCCCcccceecCHHh-hhcCCCCCEEEccCCeeeEEcCCCCcC
Q 047285          466 NMLNGFIPLSLGKLS-HLEYLDLSNNKLNASLSEIH-FVNLTKLTWFSASGNSLILKFNPNWVP  527 (552)
Q Consensus       466 n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~-~~~l~~L~~L~L~~n~~~~~~~~~~~~  527 (552)
                      |++++..|..+..++ +|++|++++|++++...... ...+...+.+.+..+.+.+..|..+..
T Consensus       233 N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g  296 (306)
T 2z66_A          233 NHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQG  296 (306)
T ss_dssp             SCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTT
T ss_pred             CCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCC
Confidence            888888888888774 88888888888876543211 222334445556667777777765544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=5.9e-28  Score=234.92  Aligned_cols=281  Identities=21%  Similarity=0.196  Sum_probs=219.0

Q ss_pred             CEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCCccEEeccCcccccc--CchhhhcccCCcEE
Q 047285          233 KVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQ--IPIGLRNLTSLRHL  310 (552)
Q Consensus       233 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~--~~~~l~~l~~L~~L  310 (552)
                      +.++.+++.++..+...   .+++++|++++|.++...+.   .+..+++|++|++++|.++..  .+..+..+++|++|
T Consensus        10 ~~l~c~~~~l~~ip~~~---~~~l~~L~L~~n~l~~i~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L   83 (306)
T 2z66_A           10 TEIRCNSKGLTSVPTGI---PSSATRLELESNKLQSLPHG---VFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYL   83 (306)
T ss_dssp             TEEECCSSCCSSCCSCC---CTTCCEEECCSSCCCCCCTT---TTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEE
T ss_pred             CEEEcCCCCcccCCCCC---CCCCCEEECCCCccCccCHh---HhhccccCCEEECCCCccCcccCcccccccccccCEE
Confidence            45666666666555432   36899999999998855444   567889999999999988733  36677788999999


Q ss_pred             eccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCCCCCCCCCchhHhhcccCceeeccccc
Q 047285          311 DLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLID  390 (552)
Q Consensus       311 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~  390 (552)
                      ++++|.+++ +|..+..+++|++|++++|.+++..+...+..+++|++|++++|. +.+..+..+..++           
T Consensus        84 ~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~-----------  150 (306)
T 2z66_A           84 DLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLS-----------  150 (306)
T ss_dssp             ECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEECSTTTTTTCT-----------
T ss_pred             ECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc-CCccchhhcccCc-----------
Confidence            999998874 555678889999999999998854442448888999999999997 6666655555444           


Q ss_pred             CCCCCccccccccccCCCCCCEEEccCCcCcc-cCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCC
Q 047285          391 LSQDFSQVLDTFSSCGAYALESLDLSICQISG-HLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLN  469 (552)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  469 (552)
                                        +|++|++++|.+++ ..|..+..+++|++|++++|++++..|..+..+++|++|++++|.++
T Consensus       151 ------------------~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  212 (306)
T 2z66_A          151 ------------------SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF  212 (306)
T ss_dssp             ------------------TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred             ------------------CCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccC
Confidence                              78999999999886 57788889999999999999998877888999999999999999998


Q ss_pred             ccCcccccCCCCCCeeeCCCcccceecCHHhhhcCC-CCCEEEccCCeeeEEcCCC--CcCcccccEEecCCCCCCCCCC
Q 047285          470 GFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLT-KLTWFSASGNSLILKFNPN--WVPPFQLETLQLRSCHLGPHFP  546 (552)
Q Consensus       470 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~-~L~~L~L~~n~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~iP  546 (552)
                      +..+..+..+++|++|++++|++++..+. .+..++ +|++|++++|++.+..+..  ..-+...+.+.+..+++....|
T Consensus       213 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p  291 (306)
T 2z66_A          213 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQ-ELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATP  291 (306)
T ss_dssp             BCCSGGGTTCTTCCEEECTTSCCCBCSSS-SCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEES
T ss_pred             ccChhhccCcccCCEeECCCCCCcccCHH-HHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCc
Confidence            76676788899999999999999887777 677774 8999999999998765321  1113345566677777777777


Q ss_pred             ccccc
Q 047285          547 SWLHS  551 (552)
Q Consensus       547 ~~l~~  551 (552)
                      +++..
T Consensus       292 ~~~~g  296 (306)
T 2z66_A          292 SDKQG  296 (306)
T ss_dssp             GGGTT
T ss_pred             hhhCC
Confidence            77643

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=5.6e-28  Score=240.01  Aligned_cols=205  Identities=23%  Similarity=0.213  Sum_probs=114.7

Q ss_pred             ccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccC
Q 047285          122 LVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLS  201 (552)
Q Consensus       122 l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~  201 (552)
                      -..++.....+.+++.++  .+|..+.  ++|++|++++|++++..+..+.++++|++|++++|.++.++..     .+.
T Consensus        27 ~~~C~~~~~c~~~~~~l~--~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-----~~~   97 (353)
T 2z80_A           27 SLSCDRNGICKGSSGSLN--SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEED-----SFS   97 (353)
T ss_dssp             CCEECTTSEEECCSTTCS--SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT-----TTT
T ss_pred             CCCCCCCeEeeCCCCCcc--ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHh-----hcC
Confidence            344566667888888888  5777654  5889999999888865555788888888888888877654322     145


Q ss_pred             CCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCC-CcccCCCCCceeecCCCCCCCCCccccccccCC
Q 047285          202 GLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPP-LLSANFSSLKALHLAINNFDNSLFQYGSWVFGL  280 (552)
Q Consensus       202 ~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l  280 (552)
                      .+++|++|++++|.++..+  +..+..+++|++|++++|.+.+.++ ..                           +..+
T Consensus        98 ~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~l~~~~~---------------------------~~~l  148 (353)
T 2z80_A           98 SLGSLEHLDLSYNYLSNLS--SSWFKPLSSLTFLNLLGNPYKTLGETSL---------------------------FSHL  148 (353)
T ss_dssp             TCTTCCEEECCSSCCSSCC--HHHHTTCTTCSEEECTTCCCSSSCSSCS---------------------------CTTC
T ss_pred             CCCCCCEEECCCCcCCcCC--HhHhCCCccCCEEECCCCCCcccCchhh---------------------------hccC
Confidence            5566666666666555421  1224455555555555555544333 22                           3334


Q ss_pred             CCccEEeccCcc-ccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEE
Q 047285          281 RNLVFIDLSSNQ-FQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETL  359 (552)
Q Consensus       281 ~~L~~L~L~~n~-~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L  359 (552)
                      ++|++|++++|. +.+..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+. .++...+..+++|+.|
T Consensus       149 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L  227 (353)
T 2z80_A          149 TKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECL  227 (353)
T ss_dssp             TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEE
T ss_pred             CCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEE
Confidence            444444444442 33233344444555555555555554444444444555555555555443 2333223334555555


Q ss_pred             eCCCCC
Q 047285          360 DLSGNS  365 (552)
Q Consensus       360 ~l~~n~  365 (552)
                      ++++|.
T Consensus       228 ~L~~n~  233 (353)
T 2z80_A          228 ELRDTD  233 (353)
T ss_dssp             EEESCB
T ss_pred             ECCCCc
Confidence            555554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=5.2e-28  Score=240.23  Aligned_cols=280  Identities=19%  Similarity=0.175  Sum_probs=132.3

Q ss_pred             CCCCCCEEeccCCCCCCCccccCCccccCCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccC
Q 047285          173 NLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSAN  252 (552)
Q Consensus       173 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~  252 (552)
                      .++.....+++++.++.+|...        .++|++|++++|.++..  .+..+..+++|++|++++|.+.+..+..+.+
T Consensus        29 ~C~~~~~c~~~~~~l~~iP~~~--------~~~L~~L~l~~n~i~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~   98 (353)
T 2z80_A           29 SCDRNGICKGSSGSLNSIPSGL--------TEAVKSLDLSNNRITYI--SNSDLQRCVNLQALVLTSNGINTIEEDSFSS   98 (353)
T ss_dssp             EECTTSEEECCSTTCSSCCTTC--------CTTCCEEECTTSCCCEE--CTTTTTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred             CCCCCeEeeCCCCCcccccccc--------cccCcEEECCCCcCccc--CHHHhccCCCCCEEECCCCccCccCHhhcCC
Confidence            3455556677776666655321        13566666666655542  1223455555556665555555555555555


Q ss_pred             CCCCceeecCCCCCCCCCccccccccCCCCccEEeccCccccccCc-hhhhcccCCcEEeccCC-CCCCCCCccCCCCCC
Q 047285          253 FSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIP-IGLRNLTSLRHLDLRFN-YFNSTTPGWLSKFND  330 (552)
Q Consensus       253 l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~  330 (552)
                      +++|++|++++|.+++..+.   .+..+++|++|++++|.+++..+ ..+..+++|++|++++| .+++..+..+.++++
T Consensus        99 l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~  175 (353)
T 2z80_A           99 LGSLEHLDLSYNYLSNLSSS---WFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTF  175 (353)
T ss_dssp             CTTCCEEECCSSCCSSCCHH---HHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCE
T ss_pred             CCCCCEEECCCCcCCcCCHh---HhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCC
Confidence            55555555555555443322   34445555555555555442211 23444555555555554 233333444444455


Q ss_pred             CCEEEccCccceeecCccccCCCCccCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCC
Q 047285          331 LEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYAL  410 (552)
Q Consensus       331 L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L  410 (552)
                      |++|++++|.+++..+.. +..+++|++|++++|. +. .+|..+..                            .+++|
T Consensus       176 L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~l~~n~-l~-~~~~~~~~----------------------------~~~~L  224 (353)
T 2z80_A          176 LEELEIDASDLQSYEPKS-LKSIQNVSHLILHMKQ-HI-LLLEIFVD----------------------------VTSSV  224 (353)
T ss_dssp             EEEEEEEETTCCEECTTT-TTTCSEEEEEEEECSC-ST-THHHHHHH----------------------------HTTTE
T ss_pred             CCEEECCCCCcCccCHHH-HhccccCCeecCCCCc-cc-cchhhhhh----------------------------hcccc
Confidence            555555555544333333 4444555555555544 32 22221111                            11245


Q ss_pred             CEEEccCCcCcccCchhhc---CCCCCcEEECCCCcccC----CCcccccCCCCCCEEeCCCCcCCccCccc-ccCCCCC
Q 047285          411 ESLDLSICQISGHLTNQLL---QFKSLHTLELGHNSLFG----PLPPALGELSSLKKLDLSNNMLNGFIPLS-LGKLSHL  482 (552)
Q Consensus       411 ~~L~ls~n~~~~~~~~~l~---~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L  482 (552)
                      ++|++++|.+++..+..+.   ..+.++.++++++.+.+    .+|..+..+++|++|++++|+++ .+|.. +..+++|
T Consensus       225 ~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L  303 (353)
T 2z80_A          225 ECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSL  303 (353)
T ss_dssp             EEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTC
T ss_pred             cEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCC
Confidence            5555555555544332221   23444555555554443    23444455555555555555555 33333 3445555


Q ss_pred             CeeeCCCcccceecC
Q 047285          483 EYLDLSNNKLNASLS  497 (552)
Q Consensus       483 ~~L~L~~n~l~~~~~  497 (552)
                      ++|++++|++.+..|
T Consensus       304 ~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          304 QKIWLHTNPWDCSCP  318 (353)
T ss_dssp             CEEECCSSCBCCCHH
T ss_pred             CEEEeeCCCccCcCC
Confidence            555555555544443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=8.9e-28  Score=235.37  Aligned_cols=235  Identities=20%  Similarity=0.234  Sum_probs=156.7

Q ss_pred             CCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEE
Q 047285          280 LRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETL  359 (552)
Q Consensus       280 l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L  359 (552)
                      .++++.|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|.. +..+++|+.|
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~-l~~l~~L~~L  155 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPAS-IASLNRLREL  155 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGG-GGGCTTCCEE
T ss_pred             ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHH-HhcCcCCCEE
Confidence            355666666666665 55555666666666666666666 55666666666666666666666 55554 6666667777


Q ss_pred             eCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEEC
Q 047285          360 DLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLEL  439 (552)
Q Consensus       360 ~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L  439 (552)
                      ++++|. ..+.+|..+....                    ....+.++++|++|++++|.++ .+|..+..+++|++|++
T Consensus       156 ~L~~n~-~~~~~p~~~~~~~--------------------~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L  213 (328)
T 4fcg_A          156 SIRACP-ELTELPEPLASTD--------------------ASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKI  213 (328)
T ss_dssp             EEEEET-TCCCCCSCSEEEC---------------------CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEE
T ss_pred             ECCCCC-CccccChhHhhcc--------------------chhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEc
Confidence            776665 5555555443311                    0011223456777777777776 56666777777777777


Q ss_pred             CCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeE
Q 047285          440 GHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLIL  519 (552)
Q Consensus       440 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~  519 (552)
                      ++|+++ .+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|++.+.+|. .+.++++|++|+|++|++.+
T Consensus       214 ~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~-~~~~l~~L~~L~L~~n~~~~  291 (328)
T 4fcg_A          214 RNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL-DIHRLTQLEKLDLRGCVNLS  291 (328)
T ss_dssp             ESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCT-TGGGCTTCCEEECTTCTTCC
T ss_pred             cCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcch-hhhcCCCCCEEeCCCCCchh
Confidence            777777 3555677777777777777777777777777777777777777777777776 57777777777777777777


Q ss_pred             EcCCCCcCcccccEEecCCCCCC
Q 047285          520 KFNPNWVPPFQLETLQLRSCHLG  542 (552)
Q Consensus       520 ~~~~~~~~~~~L~~L~l~~n~~~  542 (552)
                      .+|..+..+++|+.+++..+.+.
T Consensus       292 ~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          292 RLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             CCCGGGGGSCTTCEEECCGGGSC
T ss_pred             hccHHHhhccCceEEeCCHHHHH
Confidence            77777777777777777766554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=1.3e-26  Score=238.03  Aligned_cols=228  Identities=21%  Similarity=0.187  Sum_probs=193.6

Q ss_pred             CCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCCCC
Q 047285          126 KHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYM  205 (552)
Q Consensus       126 ~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~  205 (552)
                      +++++|+|++|.+++. .|+.|+.+++|++|+|++|++++..|..+.++++|++|++++|.++.++...     +..+++
T Consensus        75 ~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-----~~~l~~  148 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMI-QADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGA-----FEYLSK  148 (452)
T ss_dssp             TTCSEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTT-----SSSCTT
T ss_pred             CCccEEECcCCcCceE-CHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhh-----hcccCC
Confidence            6889999999999863 5788899999999999999998777788899999999999999887765432     678889


Q ss_pred             CCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCC-CCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCCcc
Q 047285          206 LEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKC-QLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLV  284 (552)
Q Consensus       206 L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~  284 (552)
                      |++|++++|.+...  ....+..+++|++|++++| .+....+..+..+++|+.|++++|.+.+. +    .+..+++|+
T Consensus       149 L~~L~L~~N~l~~~--~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~----~~~~l~~L~  221 (452)
T 3zyi_A          149 LRELWLRNNPIESI--PSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P----NLTPLVGLE  221 (452)
T ss_dssp             CCEEECCSCCCCEE--CTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C----CCTTCTTCC
T ss_pred             CCEEECCCCCccee--CHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c----ccccccccc
Confidence            99999999988763  2346778999999999984 45556666788999999999999998864 2    467889999


Q ss_pred             EEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCC
Q 047285          285 FIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGN  364 (552)
Q Consensus       285 ~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n  364 (552)
                      +|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|+++ .++...+..+++|+.|++++|
T Consensus       222 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N  300 (452)
T 3zyi_A          222 ELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN  300 (452)
T ss_dssp             EEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-CCCTTSSTTCTTCCEEECCSS
T ss_pred             EEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC-ccChHHhccccCCCEEEccCC
Confidence            9999999999888899999999999999999999988889999999999999999998 555555888999999999999


Q ss_pred             CCCC
Q 047285          365 SKLG  368 (552)
Q Consensus       365 ~~l~  368 (552)
                      + +.
T Consensus       301 p-~~  303 (452)
T 3zyi_A          301 P-WN  303 (452)
T ss_dssp             C-EE
T ss_pred             C-cC
Confidence            8 54

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=2.4e-27  Score=228.14  Aligned_cols=250  Identities=23%  Similarity=0.223  Sum_probs=159.1

Q ss_pred             CCceeecCCCCCCCCCccccccccCCCCccEEeccCccccccCchhhhcccCCcEEeccCCC-CCCCCCccCCCCCCCCE
Q 047285          255 SLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNY-FNSTTPGWLSKFNDLEF  333 (552)
Q Consensus       255 ~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~  333 (552)
                      +++.|++++|.+++..+.   .+..+++|++|++++|.+++..+..+..+++|++|++++|. ++...+..+..+++|++
T Consensus        33 ~l~~L~l~~n~i~~~~~~---~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~  109 (285)
T 1ozn_A           33 ASQRIFLHGNRISHVPAA---SFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT  109 (285)
T ss_dssp             TCSEEECTTSCCCEECTT---TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred             CceEEEeeCCcCCccCHH---HcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence            344444444444433333   34445555555555555555445556666666666666665 55554556666666666


Q ss_pred             EEccCccceeecCccccCCCCccCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEE
Q 047285          334 LSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESL  413 (552)
Q Consensus       334 L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L  413 (552)
                      |++++|.+++..+.. +..+++|++|++++|. +++..+..+..++                             +|++|
T Consensus       110 L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~-----------------------------~L~~L  158 (285)
T 1ozn_A          110 LHLDRCGLQELGPGL-FRGLAALQYLYLQDNA-LQALPDDTFRDLG-----------------------------NLTHL  158 (285)
T ss_dssp             EECTTSCCCCCCTTT-TTTCTTCCEEECCSSC-CCCCCTTTTTTCT-----------------------------TCCEE
T ss_pred             EECCCCcCCEECHhH-hhCCcCCCEEECCCCc-ccccCHhHhccCC-----------------------------CccEE
Confidence            666666666433333 6666777777777776 5544333343333                             67777


Q ss_pred             EccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccc
Q 047285          414 DLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLN  493 (552)
Q Consensus       414 ~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  493 (552)
                      ++++|.+++..+..+..+++|+.|++++|++++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|++.
T Consensus       159 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          159 FLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             ECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence            77777777666666777888888888888888777778888888888888888888665666788888888888888887


Q ss_pred             eecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcC--cccccEEecCCCC
Q 047285          494 ASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVP--PFQLETLQLRSCH  540 (552)
Q Consensus       494 ~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~--~~~L~~L~l~~n~  540 (552)
                      ...+...+.  ..++.+....+.+.+..|..+..  +..++..++++|+
T Consensus       239 c~~~~~~~~--~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C~  285 (285)
T 1ozn_A          239 CDCRARPLW--AWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGCA  285 (285)
T ss_dssp             CSGGGHHHH--HHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC-
T ss_pred             CCCCcHHHH--HHHHhcccccCccccCCchHhCCcChhhcCHHHhccCC
Confidence            655432111  22344456777888888876644  4566666666663

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=2.3e-30  Score=275.89  Aligned_cols=394  Identities=12%  Similarity=0.015  Sum_probs=277.2

Q ss_pred             CccccccCccccC-CCC-CCEEeCCCCc-CCCCccCcccCCCCCCCEEeCCCCcCCCC----CccccCCCCCCCEEeccC
Q 047285          112 SKLGGKVNPSLVD-LKH-LIHLDLSGND-FEGIQIPKYLGSLENLRYLNLSGAKFAGM----IPLQLGNLSNLQYLDLSG  184 (552)
Q Consensus       112 ~~~~~~~~~~l~~-l~~-L~~L~Ls~n~-~~~~~~p~~~~~l~~L~~L~L~~~~~~~~----lp~~l~~l~~L~~L~l~~  184 (552)
                      +.+.+..+..+.. ++. |++|++++|. +....++.....+++|++|+|++|.+++.    ++....++++|++|++++
T Consensus       122 ~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~  201 (592)
T 3ogk_B          122 MIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYM  201 (592)
T ss_dssp             CBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTT
T ss_pred             cEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeec
Confidence            3555555555555 444 9999999886 32212344445789999999999988765    445567889999999999


Q ss_pred             CCCCCCccccCCcc-ccCCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCC---CCCCCcccCCCCCceee
Q 047285          185 TFLSNYDLHVDSLS-WLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLC---HFPPLLSANFSSLKALH  260 (552)
Q Consensus       185 n~l~~~~~~~~~~~-~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~---~~~~~~~~~l~~L~~L~  260 (552)
                      |.++.+..  ..++ .+..+++|++|++++|.+.+   ++..+..+++|++|+++.+...   +.....+..+++|+.|+
T Consensus       202 n~~~~~~~--~~l~~~~~~~~~L~~L~L~~~~~~~---l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~  276 (592)
T 3ogk_B          202 TEFAKISP--KDLETIARNCRSLVSVKVGDFEILE---LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLG  276 (592)
T ss_dssp             CCCSSCCH--HHHHHHHHHCTTCCEEECSSCBGGG---GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEE
T ss_pred             cCCCccCH--HHHHHHHhhCCCCcEEeccCccHHH---HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccC
Confidence            98763321  1222 24578999999999998776   5566778899999999864332   23345667788999999


Q ss_pred             cCCCCCCCCCccccccccCCCCccEEeccCccccccCc-hhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccC-
Q 047285          261 LAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIP-IGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAW-  338 (552)
Q Consensus       261 l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~-  338 (552)
                      ++.+. .+.++.   .+..+++|++|++++|.+++... ..+..+++|++|+++++...+.++.....+++|++|++++ 
T Consensus       277 l~~~~-~~~l~~---~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g  352 (592)
T 3ogk_B          277 LSYMG-PNEMPI---LFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERG  352 (592)
T ss_dssp             ETTCC-TTTGGG---GGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECC
T ss_pred             ccccc-hhHHHH---HHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecC
Confidence            98752 333444   66778999999999998765443 4467899999999984322223334446688999999993 


Q ss_pred             ----------ccceeecCccccCCCCccCEEeCCCCCCCCCCCchhHhh-cccCceeeccccc--CCCCCccc--ccccc
Q 047285          339 ----------NSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFAR-LCKLTSVDLSLID--LSQDFSQV--LDTFS  403 (552)
Q Consensus       339 ----------n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~-l~~L~~l~l~~~~--~~~~~~~~--~~~~~  403 (552)
                                +.+++.........+++|++|+++.+. +++..+..+.. +++|+.+++....  +.....+.  -....
T Consensus       353 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~-l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~  431 (592)
T 3ogk_B          353 ADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSD-ITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSL  431 (592)
T ss_dssp             CCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESC-CCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHH
T ss_pred             ccccccccccCccCHHHHHHHHhhCccCeEEEeecCC-ccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHH
Confidence                      555543222224558999999997776 88777777776 8889999886432  11111100  01111


Q ss_pred             ccCCCCCCEEEccCCc--CcccCchhhcC-CCCCcEEECCCCcccC-CCcccccCCCCCCEEeCCCCcCCcc-CcccccC
Q 047285          404 SCGAYALESLDLSICQ--ISGHLTNQLLQ-FKSLHTLELGHNSLFG-PLPPALGELSSLKKLDLSNNMLNGF-IPLSLGK  478 (552)
Q Consensus       404 ~~~~~~L~~L~ls~n~--~~~~~~~~l~~-l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~  478 (552)
                      ..++++|++|++++|.  +++..+..+.. +++|++|++++|++++ .++..+..+++|++|++++|.+++. ++..+..
T Consensus       432 ~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~  511 (592)
T 3ogk_B          432 LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTK  511 (592)
T ss_dssp             HHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHH
T ss_pred             HHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHh
Confidence            3457899999998654  66665555544 8999999999999986 3455668899999999999998754 4455567


Q ss_pred             CCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCC
Q 047285          479 LSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGN  515 (552)
Q Consensus       479 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n  515 (552)
                      +++|++|++++|++++.-.......++.+....+..+
T Consensus       512 l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~  548 (592)
T 3ogk_B          512 LPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR  548 (592)
T ss_dssp             CSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred             cCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence            8999999999999977644423456788777666654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=3.5e-26  Score=234.88  Aligned_cols=252  Identities=20%  Similarity=0.156  Sum_probs=192.0

Q ss_pred             CCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCCcc
Q 047285          205 MLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLV  284 (552)
Q Consensus       205 ~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~  284 (552)
                      ....++.++..++.++   ..+  .+++++|++++|.+.+..+..|.++++|+.|++++|.+.+..+.   .+..+++|+
T Consensus        55 ~~~~v~c~~~~l~~iP---~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~---~~~~l~~L~  126 (452)
T 3zyi_A           55 QFSKVVCTRRGLSEVP---QGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVG---AFNGLASLN  126 (452)
T ss_dssp             SSCEEECCSSCCSSCC---SCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT---TTTTCTTCC
T ss_pred             CCcEEEECCCCcCccC---CCC--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChh---hccCcccCC
Confidence            3467777777776643   222  26788888888888888888888888888888888888776666   677788888


Q ss_pred             EEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCC
Q 047285          285 FIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGN  364 (552)
Q Consensus       285 ~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n  364 (552)
                      +|++++|.+++..+..+..+++|++|++++|.+++..+..+.++++|++|++++|...+.++...+..+++|+.|++++|
T Consensus       127 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n  206 (452)
T 3zyi_A          127 TLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC  206 (452)
T ss_dssp             EEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS
T ss_pred             EEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC
Confidence            88888888876666667778888888888888877666677788888888888755555666655777888888888888


Q ss_pred             CCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcc
Q 047285          365 SKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSL  444 (552)
Q Consensus       365 ~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l  444 (552)
                      . +++ +|. +                             ..+++|++|++++|.+++..|..+..+++|+.|++++|++
T Consensus       207 ~-l~~-~~~-~-----------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l  254 (452)
T 3zyi_A          207 N-IKD-MPN-L-----------------------------TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV  254 (452)
T ss_dssp             C-CSS-CCC-C-----------------------------TTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCC
T ss_pred             c-ccc-ccc-c-----------------------------cccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcC
Confidence            6 542 221 1                             1334788888888888888888888888888888888888


Q ss_pred             cCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceec
Q 047285          445 FGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASL  496 (552)
Q Consensus       445 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  496 (552)
                      ++..+..+..+++|+.|++++|.+++..+..+..+++|+.|+|++|++....
T Consensus       255 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC  306 (452)
T 3zyi_A          255 SLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDC  306 (452)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECST
T ss_pred             ceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCC
Confidence            8777788888888888888888888666667778888888888888876544

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=5.4e-26  Score=232.59  Aligned_cols=252  Identities=22%  Similarity=0.193  Sum_probs=190.7

Q ss_pred             CCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCCcc
Q 047285          205 MLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLV  284 (552)
Q Consensus       205 ~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~  284 (552)
                      ..+.++.++..++.++   ..+  .++++.|++++|.+.+..+..+.++++|++|++++|.+.+..+.   .+..+++|+
T Consensus        44 ~~~~v~c~~~~l~~iP---~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~---~~~~l~~L~  115 (440)
T 3zyj_A           44 QFSKVICVRKNLREVP---DGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIG---AFNGLANLN  115 (440)
T ss_dssp             TSCEEECCSCCCSSCC---SCC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGG---GGTTCSSCC
T ss_pred             CCCEEEeCCCCcCcCC---CCC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChh---hccCCccCC
Confidence            3567777777776643   222  26788888888888888888888888888888888887766655   677778888


Q ss_pred             EEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCC
Q 047285          285 FIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGN  364 (552)
Q Consensus       285 ~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n  364 (552)
                      +|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|...+.++...+..+++|+.|++++|
T Consensus       116 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n  195 (440)
T 3zyj_A          116 TLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC  195 (440)
T ss_dssp             EEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS
T ss_pred             EEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC
Confidence            88888888776555567778888888888888777666677778888888888765555666655777788888888887


Q ss_pred             CCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcc
Q 047285          365 SKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSL  444 (552)
Q Consensus       365 ~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l  444 (552)
                      . ++ .+|. +                             ..+++|++|++++|.+++..+..+..+++|+.|++++|++
T Consensus       196 ~-l~-~~~~-~-----------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l  243 (440)
T 3zyj_A          196 N-LR-EIPN-L-----------------------------TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI  243 (440)
T ss_dssp             C-CS-SCCC-C-----------------------------TTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             c-Cc-cccc-c-----------------------------CCCcccCEEECCCCccCccChhhhccCccCCEEECCCCce
Confidence            6 54 2221 1                             2334788888888888888788888888888888888888


Q ss_pred             cCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceec
Q 047285          445 FGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASL  496 (552)
Q Consensus       445 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  496 (552)
                      ++..+..|..+++|++|+|++|++++..+..+..+++|+.|+|++|++....
T Consensus       244 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC  295 (440)
T 3zyj_A          244 QVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNC  295 (440)
T ss_dssp             CEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSS
T ss_pred             eEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCC
Confidence            8777788888888888888888888666667788888888888888876543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=1e-26  Score=223.62  Aligned_cols=255  Identities=20%  Similarity=0.158  Sum_probs=208.6

Q ss_pred             ceeecCCCCCCCCCccccccccCCCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEc
Q 047285          257 KALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSV  336 (552)
Q Consensus       257 ~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l  336 (552)
                      +.++.+++.++....    .  ..++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        14 ~~~~c~~~~l~~ip~----~--~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   87 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPV----G--IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL   87 (285)
T ss_dssp             CEEECCSSCCSSCCT----T--CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             eEEEcCcCCcccCCc----C--CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeC
Confidence            345555555543321    1  2468999999999998777778899999999999999999888888999999999999


Q ss_pred             cCcc-ceeecCccccCCCCccCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEc
Q 047285          337 AWNS-LQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDL  415 (552)
Q Consensus       337 ~~n~-l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l  415 (552)
                      ++|. +. .++...+..+++|++|++++|. +++..+..+..++                             +|++|++
T Consensus        88 ~~n~~l~-~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~-----------------------------~L~~L~l  136 (285)
T 1ozn_A           88 SDNAQLR-SVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLA-----------------------------ALQYLYL  136 (285)
T ss_dssp             CSCTTCC-CCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCT-----------------------------TCCEEEC
T ss_pred             CCCCCcc-ccCHHHhcCCcCCCEEECCCCc-CCEECHhHhhCCc-----------------------------CCCEEEC
Confidence            9997 55 5544448889999999999998 7766666555554                             8999999


Q ss_pred             cCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCccccee
Q 047285          416 SICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNAS  495 (552)
Q Consensus       416 s~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  495 (552)
                      ++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..|..+..+++|+.|++++|++++ 
T Consensus       137 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-  215 (285)
T 1ozn_A          137 QDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA-  215 (285)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC-
T ss_pred             CCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCc-
Confidence            9999998877889999999999999999997666779999999999999999998889999999999999999999976 


Q ss_pred             cCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcccccEEecCCCCCCCCCCcccc
Q 047285          496 LSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLGPHFPSWLH  550 (552)
Q Consensus       496 ~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~iP~~l~  550 (552)
                      ++...+..+++|++|++++|++.+..+... ....++.+..+.+.+....|+.+.
T Consensus       216 ~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~-~~~~l~~~~~~~~~~~c~~p~~l~  269 (285)
T 1ozn_A          216 LPTEALAPLRALQYLRLNDNPWVCDCRARP-LWAWLQKFRGSSSEVPCSLPQRLA  269 (285)
T ss_dssp             CCHHHHTTCTTCCEEECCSSCEECSGGGHH-HHHHHHHCCSEECCCBEEESGGGT
T ss_pred             CCHHHcccCcccCEEeccCCCccCCCCcHH-HHHHHHhcccccCccccCCchHhC
Confidence            444379999999999999999997765321 123466667778888888887664

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=1.6e-25  Score=229.05  Aligned_cols=248  Identities=23%  Similarity=0.218  Sum_probs=199.3

Q ss_pred             CCCEEeccCCCCCCCccccCCccccCCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCC
Q 047285          176 NLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSS  255 (552)
Q Consensus       176 ~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~  255 (552)
                      ..+.++.++..++.+|..        -.++++.|++++|.+...  .+..+..+++|++|++++|.+.+..+..|.++++
T Consensus        44 ~~~~v~c~~~~l~~iP~~--------~~~~l~~L~L~~n~i~~~--~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~  113 (440)
T 3zyj_A           44 QFSKVICVRKNLREVPDG--------ISTNTRLLNLHENQIQII--KVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLAN  113 (440)
T ss_dssp             TSCEEECCSCCCSSCCSC--------CCTTCSEEECCSCCCCEE--CTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSS
T ss_pred             CCCEEEeCCCCcCcCCCC--------CCCCCcEEEccCCcCCee--CHHHhhCCCCCCEEECCCCcCCccChhhccCCcc
Confidence            356788888877777743        126788899999988763  3456778889999999999988888888888999


Q ss_pred             CceeecCCCCCCCCCccccccccCCCCccEEeccCccccccCchhhhcccCCcEEeccCCC-CCCCCCccCCCCCCCCEE
Q 047285          256 LKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNY-FNSTTPGWLSKFNDLEFL  334 (552)
Q Consensus       256 L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L  334 (552)
                      |++|++++|.+++..+.   .+..+++|++|++++|.+....+..+..+++|++|++++|. +....+..+.++++|++|
T Consensus       114 L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L  190 (440)
T 3zyj_A          114 LNTLELFDNRLTTIPNG---AFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYL  190 (440)
T ss_dssp             CCEEECCSSCCSSCCTT---TSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEE
T ss_pred             CCEEECCCCcCCeeCHh---HhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCee
Confidence            99999999988876665   67788899999999998887666778888999999998854 444444578888899999


Q ss_pred             EccCccceeecCccccCCCCccCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEE
Q 047285          335 SVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLD  414 (552)
Q Consensus       335 ~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~  414 (552)
                      ++++|.++ .+|.  +..+++|+.|++++|. +++..|..|..++                             +|++|+
T Consensus       191 ~L~~n~l~-~~~~--~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~-----------------------------~L~~L~  237 (440)
T 3zyj_A          191 NLAMCNLR-EIPN--LTPLIKLDELDLSGNH-LSAIRPGSFQGLM-----------------------------HLQKLW  237 (440)
T ss_dssp             ECTTSCCS-SCCC--CTTCSSCCEEECTTSC-CCEECTTTTTTCT-----------------------------TCCEEE
T ss_pred             cCCCCcCc-cccc--cCCCcccCEEECCCCc-cCccChhhhccCc-----------------------------cCCEEE
Confidence            99999887 5553  7788889999999987 7766666665554                             788888


Q ss_pred             ccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCC
Q 047285          415 LSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLN  469 (552)
Q Consensus       415 ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  469 (552)
                      +++|.+++..+..+..+++|+.|+|++|++++..+..+..+++|+.|++++|++.
T Consensus       238 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          238 MIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             CTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             CCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence            9999888888888888899999999999988777777888889999999998875

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.94  E-value=1.2e-24  Score=229.17  Aligned_cols=263  Identities=22%  Similarity=0.213  Sum_probs=156.1

Q ss_pred             CCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCCCC
Q 047285          126 KHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYM  205 (552)
Q Consensus       126 ~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~  205 (552)
                      .++++|++++|.++  .+|..+.  ++|++|++++|+++ .+|.   .+++|++|++++|.++.+|.         .+++
T Consensus        40 ~~l~~L~ls~n~L~--~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~lp~---------~l~~  102 (622)
T 3g06_A           40 NGNAVLNVGESGLT--TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTSLPV---------LPPG  102 (622)
T ss_dssp             HCCCEEECCSSCCS--CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSCCCC---------CCTT
T ss_pred             CCCcEEEecCCCcC--ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCcCCC---------CCCC
Confidence            46899999999998  5787765  89999999999998 5665   67899999999998876552         5677


Q ss_pred             CCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCCccE
Q 047285          206 LEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVF  285 (552)
Q Consensus       206 L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~  285 (552)
                      |++|++++|.++..+.      .+++|++|++++|.+++.+..    +++|++|++++|.+++. +.      .+++|+.
T Consensus       103 L~~L~Ls~N~l~~l~~------~l~~L~~L~L~~N~l~~lp~~----l~~L~~L~Ls~N~l~~l-~~------~~~~L~~  165 (622)
T 3g06_A          103 LLELSIFSNPLTHLPA------LPSGLCKLWIFGNQLTSLPVL----PPGLQELSVSDNQLASL-PA------LPSELCK  165 (622)
T ss_dssp             CCEEEECSCCCCCCCC------CCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSCC-CC------CCTTCCE
T ss_pred             CCEEECcCCcCCCCCC------CCCCcCEEECCCCCCCcCCCC----CCCCCEEECcCCcCCCc-CC------ccCCCCE
Confidence            8888888887776432      456777777777776654431    25555555555555432 11      1234555


Q ss_pred             EeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCCC
Q 047285          286 IDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNS  365 (552)
Q Consensus       286 L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~  365 (552)
                      |++++|.+++ +|   ..+++|+.|++++|.+++                         ++.    .+++|+.|++++|.
T Consensus       166 L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-------------------------l~~----~~~~L~~L~L~~N~  212 (622)
T 3g06_A          166 LWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-------------------------LPT----LPSELYKLWAYNNR  212 (622)
T ss_dssp             EECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-------------------------CCC----CCTTCCEEECCSSC
T ss_pred             EECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-------------------------CCC----ccchhhEEECcCCc
Confidence            5555555442 23   223444444444444443                         222    12445555555554


Q ss_pred             CCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCccc
Q 047285          366 KLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLF  445 (552)
Q Consensus       366 ~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~  445 (552)
                       ++ .+|..                                +++|++|++++|.+++ +|   ..+++|+.|++++|+++
T Consensus       213 -l~-~l~~~--------------------------------~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~  254 (622)
T 3g06_A          213 -LT-SLPAL--------------------------------PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT  254 (622)
T ss_dssp             -CS-SCCCC--------------------------------CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS
T ss_pred             -cc-ccCCC--------------------------------CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC
Confidence             32 11110                                0145555555555554 22   23455666666666555


Q ss_pred             CCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCH
Q 047285          446 GPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSE  498 (552)
Q Consensus       446 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  498 (552)
                       .+|.   .+++|+.|++++|.++ .+|..+.++++|+.|+|++|++++.+|.
T Consensus       255 -~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~  302 (622)
T 3g06_A          255 -SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  302 (622)
T ss_dssp             -CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred             -cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence             3443   3455666666666665 4555566666666666666666555544

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.94  E-value=5.3e-30  Score=273.22  Aligned_cols=133  Identities=15%  Similarity=0.080  Sum_probs=59.7

Q ss_pred             CCCCEEEccCCcCcccCchhhc-CCCCCcEEECC--C----CcccCC-----CcccccCCCCCCEEeCCCCcCCccCccc
Q 047285          408 YALESLDLSICQISGHLTNQLL-QFKSLHTLELG--H----NSLFGP-----LPPALGELSSLKKLDLSNNMLNGFIPLS  475 (552)
Q Consensus       408 ~~L~~L~ls~n~~~~~~~~~l~-~l~~L~~L~L~--~----n~l~~~-----~~~~l~~l~~L~~L~L~~n~l~~~~~~~  475 (552)
                      ++|++|.++.+.+++..+..+. .+++|+.|+++  +    +.+++.     ++..+..+++|++|++++ .+++..+..
T Consensus       372 ~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~  450 (594)
T 2p1m_B          372 PKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEY  450 (594)
T ss_dssp             TTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHH
T ss_pred             hhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHH
Confidence            4555555555555544333333 35555555555  2    233211     111134455555555544 333332223


Q ss_pred             ccC-CCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCC-CCcCcccccEEecCCCCC
Q 047285          476 LGK-LSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNP-NWVPPFQLETLQLRSCHL  541 (552)
Q Consensus       476 ~~~-l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~~~~L~~L~l~~n~~  541 (552)
                      +.. +++|++|++++|.+++..+.....++++|++|++++|++++.... ....+++|+.|++++|++
T Consensus       451 l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          451 IGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             HHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             HHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            322 455555555555554433331224455555555555555322222 222345555555555554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=1.8e-27  Score=231.94  Aligned_cols=248  Identities=22%  Similarity=0.172  Sum_probs=159.6

Q ss_pred             cCCCCCceeecCCCCCCCCCccccccccCCCCccEEeccCcccc-ccCchhhh-------cccCCcEEeccCCCCCCCCC
Q 047285          251 ANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQ-GQIPIGLR-------NLTSLRHLDLRFNYFNSTTP  322 (552)
Q Consensus       251 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~-~~~~~~l~-------~l~~L~~L~l~~n~l~~~~~  322 (552)
                      ...++|+.|++++|.+  .+|.   .+...  |+.|++++|.+. ..+|..+.       .+++|++|++++|.+++..|
T Consensus        40 ~~~~~L~~l~l~~n~l--~~p~---~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  112 (312)
T 1wwl_A           40 GGGRSLEYLLKRVDTE--ADLG---QFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAP  112 (312)
T ss_dssp             EEEEECTTHHHHCCTT--CCCH---HHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCC
T ss_pred             ccCCCceeEeeccccc--ccHH---HHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhH
Confidence            3445566666666665  3333   22222  666666666663 34454443       56677777777777776666


Q ss_pred             ccC--CCCCCCCEEEccCccceeecCccccCCC-----CccCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCC
Q 047285          323 GWL--SKFNDLEFLSVAWNSLQGTISSVGLENL-----TSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDF  395 (552)
Q Consensus       323 ~~l--~~l~~L~~L~l~~n~l~~~~~~~~l~~l-----~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~  395 (552)
                      ..+  ..+++|++|++++|.+++. |.. +..+     ++|++|++++|. +.+..+..+..++                
T Consensus       113 ~~~~~~~l~~L~~L~Ls~N~l~~~-~~~-~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~----------------  173 (312)
T 1wwl_A          113 PPLLEATGPDLNILNLRNVSWATR-DAW-LAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRVFP----------------  173 (312)
T ss_dssp             CCSSSCCSCCCSEEEEESCBCSSS-SSH-HHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCCCS----------------
T ss_pred             HHHHHhcCCCccEEEccCCCCcch-hHH-HHHHHHhhcCCCcEEEeeCCC-CccchHHHhccCC----------------
Confidence            654  6667777777777776644 433 4433     677777777776 5555545544443                


Q ss_pred             ccccccccccCCCCCCEEEccCCcCccc--Cchhh--cCCCCCcEEECCCCcccC--CCc-ccccCCCCCCEEeCCCCcC
Q 047285          396 SQVLDTFSSCGAYALESLDLSICQISGH--LTNQL--LQFKSLHTLELGHNSLFG--PLP-PALGELSSLKKLDLSNNML  468 (552)
Q Consensus       396 ~~~~~~~~~~~~~~L~~L~ls~n~~~~~--~~~~l--~~l~~L~~L~L~~n~l~~--~~~-~~l~~l~~L~~L~L~~n~l  468 (552)
                                   +|++|++++|++.+.  .+..+  ..+++|++|++++|++++  .++ ..+..+++|++|++++|.+
T Consensus       174 -------------~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l  240 (312)
T 1wwl_A          174 -------------ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSL  240 (312)
T ss_dssp             -------------SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCC
T ss_pred             -------------CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcC
Confidence                         677777777776654  23333  667778888888887762  122 2335677888888888887


Q ss_pred             CccCc-ccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcccccEEecCCCCCCC
Q 047285          469 NGFIP-LSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLGP  543 (552)
Q Consensus       469 ~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~  543 (552)
                      ++..| ..+..+++|++|++++|+++ .+|. .+.  ++|++|++++|++.+. |. +..+++|+.|++++|++++
T Consensus       241 ~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~-~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          241 RDAAGAPSCDWPSQLNSLNLSFTGLK-QVPK-GLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             CSSCCCSCCCCCTTCCEEECTTSCCS-SCCS-SCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             CcccchhhhhhcCCCCEEECCCCccC-hhhh-hcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            76654 34556778888888888885 5665 333  7788888888888765 54 7778888888888888875

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=3e-24  Score=226.12  Aligned_cols=266  Identities=24%  Similarity=0.235  Sum_probs=197.5

Q ss_pred             CCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCCCCCCEEeCCCCcCCCCcchhhhcCCCC
Q 047285          151 ENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLP  230 (552)
Q Consensus       151 ~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~  230 (552)
                      .++++|++++|+++ .+|..+.  ++|++|++++|.++.+|.         .+++|++|++++|.++..+.      .++
T Consensus        40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~lp~---------~l~~L~~L~Ls~N~l~~lp~------~l~  101 (622)
T 3g06_A           40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLPA---------LPPELRTLEVSGNQLTSLPV------LPP  101 (622)
T ss_dssp             HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSCCCC---------CCTTCCEEEECSCCCSCCCC------CCT
T ss_pred             CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCCCCC---------cCCCCCEEEcCCCcCCcCCC------CCC
Confidence            35899999999998 7787776  899999999998876552         35677777777777665322      456


Q ss_pred             CCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCCccEEeccCccccccCchhhhcccCCcEE
Q 047285          231 SLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHL  310 (552)
Q Consensus       231 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L  310 (552)
                      +|++|++++|.+++.+.                               .+++|+.|++++|.+++ +|..   +++|++|
T Consensus       102 ~L~~L~Ls~N~l~~l~~-------------------------------~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L  146 (622)
T 3g06_A          102 GLLELSIFSNPLTHLPA-------------------------------LPSGLCKLWIFGNQLTS-LPVL---PPGLQEL  146 (622)
T ss_dssp             TCCEEEECSCCCCCCCC-------------------------------CCTTCCEEECCSSCCSC-CCCC---CTTCCEE
T ss_pred             CCCEEECcCCcCCCCCC-------------------------------CCCCcCEEECCCCCCCc-CCCC---CCCCCEE
Confidence            66666666666554332                               23456666666666553 3432   3677777


Q ss_pred             eccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCCCCCCCCCchhHhhcccCceeeccccc
Q 047285          311 DLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLID  390 (552)
Q Consensus       311 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~  390 (552)
                      ++++|.+++. |.   .+++|+.|++++|.++ .++    ..+++|+.|++++|. +++ +|..                
T Consensus       147 ~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~-~l~----~~~~~L~~L~Ls~N~-l~~-l~~~----------------  199 (622)
T 3g06_A          147 SVSDNQLASL-PA---LPSELCKLWAYNNQLT-SLP----MLPSGLQELSVSDNQ-LAS-LPTL----------------  199 (622)
T ss_dssp             ECCSSCCSCC-CC---CCTTCCEEECCSSCCS-CCC----CCCTTCCEEECCSSC-CSC-CCCC----------------
T ss_pred             ECcCCcCCCc-CC---ccCCCCEEECCCCCCC-CCc----ccCCCCcEEECCCCC-CCC-CCCc----------------
Confidence            7777777653 22   3467888888888887 355    346889999999997 653 3321                


Q ss_pred             CCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCc
Q 047285          391 LSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNG  470 (552)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  470 (552)
                                      .++|+.|++++|.++. +|.   .+++|+.|++++|++++ +|   ..+++|++|++++|.++ 
T Consensus       200 ----------------~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-  254 (622)
T 3g06_A          200 ----------------PSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-  254 (622)
T ss_dssp             ----------------CTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-
T ss_pred             ----------------cchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-
Confidence                            1379999999999985 443   35899999999999985 66   56789999999999998 


Q ss_pred             cCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCc
Q 047285          471 FIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWV  526 (552)
Q Consensus       471 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~  526 (552)
                      .+|.   .+++|+.|++++|+++ .+|. .+.++++|+.|+|++|++.+..|..+.
T Consensus       255 ~lp~---~~~~L~~L~Ls~N~L~-~lp~-~l~~l~~L~~L~L~~N~l~~~~~~~l~  305 (622)
T 3g06_A          255 SLPM---LPSGLLSLSVYRNQLT-RLPE-SLIHLSSETTVNLEGNPLSERTLQALR  305 (622)
T ss_dssp             CCCC---CCTTCCEEECCSSCCC-SCCG-GGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred             cCCc---ccccCcEEeCCCCCCC-cCCH-HHhhccccCEEEecCCCCCCcCHHHHH
Confidence            5776   5789999999999996 7887 799999999999999999987765443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=2.7e-26  Score=224.05  Aligned_cols=254  Identities=22%  Similarity=0.209  Sum_probs=116.6

Q ss_pred             EEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCCccEEeccCccccccCchhhhcccCCcEEeccC
Q 047285          235 LKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRF  314 (552)
Q Consensus       235 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~  314 (552)
                      .+++.+.+...+...+..+++|++|++++|.+++..+.   .+..+++|++|++++|.+++..+  +..+++|++|++++
T Consensus        15 ~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~   89 (317)
T 3o53_A           15 EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAA---DLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN   89 (317)
T ss_dssp             ESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHH---HHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred             eeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHH---HhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence            33344433333333333444555555555555444433   44445555555555555443322  44445555555555


Q ss_pred             CCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCC
Q 047285          315 NYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQD  394 (552)
Q Consensus       315 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~  394 (552)
                      |.+++..     ..++|++|++++|.+++..+.    .+++|+.|++++|. +++..+..+..++               
T Consensus        90 n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~----~~~~L~~L~l~~N~-l~~~~~~~~~~l~---------------  144 (317)
T 3o53_A           90 NYVQELL-----VGPSIETLHAANNNISRVSCS----RGQGKKNIYLANNK-ITMLRDLDEGCRS---------------  144 (317)
T ss_dssp             SEEEEEE-----ECTTCCEEECCSSCCSEEEEC----CCSSCEEEECCSSC-CCSGGGBCTGGGS---------------
T ss_pred             Ccccccc-----CCCCcCEEECCCCccCCcCcc----ccCCCCEEECCCCC-CCCccchhhhccC---------------
Confidence            5444321     124455555555544422211    23444555555544 3333232222222               


Q ss_pred             CccccccccccCCCCCCEEEccCCcCcccCchhhc-CCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCc
Q 047285          395 FSQVLDTFSSCGAYALESLDLSICQISGHLTNQLL-QFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIP  473 (552)
Q Consensus       395 ~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  473 (552)
                                    +|++|++++|.+++..+..+. .+++|++|++++|++++. +. ...+++|++|++++|.+++ +|
T Consensus       145 --------------~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~  207 (317)
T 3o53_A          145 --------------RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MG  207 (317)
T ss_dssp             --------------SEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-EC
T ss_pred             --------------CCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc-ch
Confidence                          455555555555554444432 455555555555555432 21 2235555555555555553 33


Q ss_pred             ccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeee-EEcCCCCcCcccccEEecC
Q 047285          474 LSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLI-LKFNPNWVPPFQLETLQLR  537 (552)
Q Consensus       474 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~-~~~~~~~~~~~~L~~L~l~  537 (552)
                      ..+..+++|++|++++|+++ .+|. .+..+++|++|++++|++. +..|..+..+++|+.++++
T Consensus       208 ~~~~~l~~L~~L~L~~N~l~-~l~~-~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~  270 (317)
T 3o53_A          208 PEFQSAAGVTWISLRNNKLV-LIEK-ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (317)
T ss_dssp             GGGGGGTTCSEEECTTSCCC-EECT-TCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred             hhhcccCcccEEECcCCccc-chhh-HhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence            33455555555555555553 2444 3455555555555555555 3333334444455555554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=3.7e-27  Score=229.65  Aligned_cols=277  Identities=19%  Similarity=0.185  Sum_probs=163.0

Q ss_pred             CCCCCCCCCCCCcccCceEecCCCCcEEEEEcCCCCccCCCCchhhcccCccccCccccccCccccCCCCCCEEeCCCCc
Q 047285           58 RLASWNTGDGDCCKWAGVFCSNITGHVLQLSLQNPFSYLGGDLREVKAGSNYERSKLGGKVNPSLVDLKHLIHLDLSGND  137 (552)
Q Consensus        58 ~~~~W~~~~~~~c~w~gv~c~~~~~~v~~L~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~  137 (552)
                      ..++|.. ...|+.+..+.......+++.+++++.                    .+  .+|..+...  |++|++++|.
T Consensus        20 ~~~~~~~-~~~c~~~~~~~~~~~~~~L~~l~l~~n--------------------~l--~~p~~~~~~--L~~L~L~~n~   74 (312)
T 1wwl_A           20 PKPDWSS-AFNCLGAADVELYGGGRSLEYLLKRVD--------------------TE--ADLGQFTDI--IKSLSLKRLT   74 (312)
T ss_dssp             SSCCGGG-GGGSSSCSEEEEEEEEEECTTHHHHCC--------------------TT--CCCHHHHHH--HHHCCCCEEE
T ss_pred             cccchHH-HhhhhccccEEEEccCCCceeEeeccc--------------------cc--ccHHHHHHH--Hhhccccccc
Confidence            3567875 456766666544322334555556553                    33  444444333  6666666666


Q ss_pred             CCCCccCcccC-------CCCCCCEEeCCCCcCCCCCcccc--CCCCCCCEEeccCCCCCCCccccCCccccCCCCCCCE
Q 047285          138 FEGIQIPKYLG-------SLENLRYLNLSGAKFAGMIPLQL--GNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEH  208 (552)
Q Consensus       138 ~~~~~~p~~~~-------~l~~L~~L~L~~~~~~~~lp~~l--~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~  208 (552)
                      +....+|..+.       .+++|++|++++|++++.+|..+  +++++|++|++++|.++..|.....++ ...+++|++
T Consensus        75 l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~-~~~~~~L~~  153 (312)
T 1wwl_A           75 VRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQ-QWLKPGLKV  153 (312)
T ss_dssp             EEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHH-TTCCTTCCE
T ss_pred             ccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHH-HhhcCCCcE
Confidence            64334555544       56666666666666666666654  666666666666666655431100000 011266666


Q ss_pred             EeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCC--CC--cccCCCCCceeecCCCCCCCCCccccccccCCCCcc
Q 047285          209 LDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFP--PL--LSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLV  284 (552)
Q Consensus       209 L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~--~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~  284 (552)
                      |++++|.+.+.  .+..+..+++|++|++++|.+.+..  +.  .+..+++|++|++++|.+++........+..+++|+
T Consensus       154 L~L~~N~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~  231 (312)
T 1wwl_A          154 LSIAQAHSLNF--SCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQ  231 (312)
T ss_dssp             EEEESCSCCCC--CTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCS
T ss_pred             EEeeCCCCccc--hHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCC
Confidence            66666666552  2345566667777777776655431  11  225667777777777766632111001334567777


Q ss_pred             EEeccCccccccCc-hhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCC
Q 047285          285 FIDLSSNQFQGQIP-IGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSG  363 (552)
Q Consensus       285 ~L~L~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~  363 (552)
                      +|++++|.+++..| ..+..+++|++|++++|.++ .+|..+.  ++|++|++++|++++. |.  +..+++|++|++++
T Consensus       232 ~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~--~~~l~~L~~L~L~~  305 (312)
T 1wwl_A          232 GLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS--PDELPQVGNLSLKG  305 (312)
T ss_dssp             EEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC--TTTSCEEEEEECTT
T ss_pred             EEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh--HhhCCCCCEEeccC
Confidence            77777777776553 34555677888888888777 5555554  7788888888887744 43  67778888888888


Q ss_pred             CCCCCC
Q 047285          364 NSKLGG  369 (552)
Q Consensus       364 n~~l~~  369 (552)
                      |+ +++
T Consensus       306 N~-l~~  310 (312)
T 1wwl_A          306 NP-FLD  310 (312)
T ss_dssp             CT-TTC
T ss_pred             CC-CCC
Confidence            87 553

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=2.2e-27  Score=231.75  Aligned_cols=267  Identities=21%  Similarity=0.179  Sum_probs=214.7

Q ss_pred             CCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCCcc
Q 047285          205 MLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLV  284 (552)
Q Consensus       205 ~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~  284 (552)
                      .++..+++.+.+..  .....+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..     .+..+++|+
T Consensus        11 ~l~i~~ls~~~l~~--~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-----~~~~l~~L~   83 (317)
T 3o53_A           11 RYKIEKVTDSSLKQ--ALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-----DLESLSTLR   83 (317)
T ss_dssp             EEEEESCCTTTHHH--HHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE-----EETTCTTCC
T ss_pred             ceeEeeccccchhh--hHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch-----hhhhcCCCC
Confidence            45566676666544  23344567889999999999999998889999999999999999987654     267889999


Q ss_pred             EEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCC
Q 047285          285 FIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGN  364 (552)
Q Consensus       285 ~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n  364 (552)
                      +|++++|.+++..     ..++|++|++++|.+++..+.   .+++|++|++++|.+++..+.. +..+++|+.|++++|
T Consensus        84 ~L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~-~~~l~~L~~L~Ls~N  154 (317)
T 3o53_A           84 TLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLD-EGCRSRVQYLDLKLN  154 (317)
T ss_dssp             EEECCSSEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBC-TGGGSSEEEEECTTS
T ss_pred             EEECcCCcccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchh-hhccCCCCEEECCCC
Confidence            9999999987432     348999999999999876554   3678999999999998544444 888999999999999


Q ss_pred             CCCCCCCchhHh-hcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCc
Q 047285          365 SKLGGKIPTSFA-RLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNS  443 (552)
Q Consensus       365 ~~l~~~~~~~~~-~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~  443 (552)
                      . +++..+..+. .+                             ++|++|++++|.+++..  ....+++|++|++++|+
T Consensus       155 ~-l~~~~~~~~~~~l-----------------------------~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~N~  202 (317)
T 3o53_A          155 E-IDTVNFAELAASS-----------------------------DTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNK  202 (317)
T ss_dssp             C-CCEEEGGGGGGGT-----------------------------TTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSC
T ss_pred             C-CCcccHHHHhhcc-----------------------------CcCCEEECCCCcCcccc--cccccccCCEEECCCCc
Confidence            8 7765555443 33                             38999999999998653  23358999999999999


Q ss_pred             ccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccc-eecCHHhhhcCCCCCEEEccCCe-eeEEc
Q 047285          444 LFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLN-ASLSEIHFVNLTKLTWFSASGNS-LILKF  521 (552)
Q Consensus       444 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~l~~L~~L~L~~n~-~~~~~  521 (552)
                      +++ +|..+..+++|++|++++|.++ .+|..+..+++|+.|++++|++. +.++. .+..+++|+.+++++++ +.+..
T Consensus       203 l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~-~~~~~~~L~~l~l~~~~~l~~~~  279 (317)
T 3o53_A          203 LAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRD-FFSKNQRVQTVAKQTVKKLTGQN  279 (317)
T ss_dssp             CCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHH-HHHTCHHHHHHHHHHHHHHHSSS
T ss_pred             CCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHH-HHhccccceEEECCCchhccCCc
Confidence            985 5556889999999999999998 57888899999999999999998 55565 78899999999998554 44444


Q ss_pred             C
Q 047285          522 N  522 (552)
Q Consensus       522 ~  522 (552)
                      |
T Consensus       280 ~  280 (317)
T 3o53_A          280 E  280 (317)
T ss_dssp             S
T ss_pred             h
Confidence            3

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=4.8e-24  Score=203.11  Aligned_cols=218  Identities=23%  Similarity=0.278  Sum_probs=143.6

Q ss_pred             CCCcccCceEecCCCCcEEEEEcCCCCccCCCCchhhcccCccccCccccccCccccCCCCCCEEeCCCCcCCCCccCcc
Q 047285           67 GDCCKWAGVFCSNITGHVLQLSLQNPFSYLGGDLREVKAGSNYERSKLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKY  146 (552)
Q Consensus        67 ~~~c~w~gv~c~~~~~~v~~L~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~  146 (552)
                      .++|.|.|+.|.- .+.++.+++++.                    .++ .+|..+.  +++++|++++|.+.+. .+..
T Consensus         2 ~~~C~~~~~~C~c-~~~~~~l~~~~~--------------------~l~-~ip~~~~--~~l~~L~l~~n~l~~~-~~~~   56 (270)
T 2o6q_A            2 EALCKKDGGVCSC-NNNKNSVDCSSK--------------------KLT-AIPSNIP--ADTKKLDLQSNKLSSL-PSKA   56 (270)
T ss_dssp             CCCBGGGTCSBEE-ETTTTEEECTTS--------------------CCS-SCCSCCC--TTCSEEECCSSCCSCC-CTTS
T ss_pred             CccCCCCCCCCEe-CCCCCEEEccCC--------------------CCC-ccCCCCC--CCCCEEECcCCCCCee-CHHH
Confidence            4799999999863 345667777763                    443 3554443  5788888888888853 4457


Q ss_pred             cCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCCCCCCEEeCCCCcCCCCcchhhhc
Q 047285          147 LGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVT  226 (552)
Q Consensus       147 ~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~  226 (552)
                      |+.+++|++|++++|+++...+..+.++++|++|++++|.++.++...     +..+++|++|++++|.           
T Consensus        57 ~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~l~~n~-----------  120 (270)
T 2o6q_A           57 FHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGV-----FDQLVNLAELRLDRNQ-----------  120 (270)
T ss_dssp             SSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTT-----TTTCSSCCEEECCSSC-----------
T ss_pred             hcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhH-----cccccCCCEEECCCCc-----------
Confidence            888888888888888887544455677888888888888776654321     3444555555555554           


Q ss_pred             CCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCCccEEeccCccccccCchhhhcccC
Q 047285          227 NSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTS  306 (552)
Q Consensus       227 ~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~  306 (552)
                                     +.+.++..+..+++|+.|++++|.+.+..+.   .+..+++|++|++++|.+++..+..+..+++
T Consensus       121 ---------------l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  182 (270)
T 2o6q_A          121 ---------------LKSLPPRVFDSLTKLTYLSLGYNELQSLPKG---VFDKLTSLKELRLYNNQLKRVPEGAFDKLTE  182 (270)
T ss_dssp             ---------------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred             ---------------cCeeCHHHhCcCcCCCEEECCCCcCCccCHh---HccCCcccceeEecCCcCcEeChhHhccCCC
Confidence                           4444444455555555555555555544333   4555666777777777666555555667777


Q ss_pred             CcEEeccCCCCCCCCCccCCCCCCCCEEEccCcccee
Q 047285          307 LRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQG  343 (552)
Q Consensus       307 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  343 (552)
                      |++|++++|.+++..+..+..+++|+.|++++|.+..
T Consensus       183 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  219 (270)
T 2o6q_A          183 LKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC  219 (270)
T ss_dssp             CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             cCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence            7777777777776666667777777777777777653

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=4.5e-25  Score=227.84  Aligned_cols=135  Identities=21%  Similarity=0.203  Sum_probs=62.0

Q ss_pred             CCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCccccc-CCCCCCEEeCCCCcCCccCcccccCCCCCCeeeC
Q 047285          409 ALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALG-ELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDL  487 (552)
Q Consensus       409 ~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  487 (552)
                      +|++|++++|.+++..|..+..+++|+.|++++|.+++..|..+. .+++|++|++++|.+++. |. ...+++|++|+|
T Consensus       121 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L  198 (487)
T 3oja_A          121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDL  198 (487)
T ss_dssp             SCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEEC
T ss_pred             CCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEEC
Confidence            344455555554444444444445555555555555444444443 344555555555554432 11 123445555555


Q ss_pred             CCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcccccEEecCCCCCC-CCCCcc
Q 047285          488 SNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLG-PHFPSW  548 (552)
Q Consensus       488 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~-~~iP~~  548 (552)
                      ++|.+++..|  .+..+++|+.|++++|.+.+ +|..+..+++|+.|++++|++. +.+|.+
T Consensus       199 s~N~l~~~~~--~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~  257 (487)
T 3oja_A          199 SSNKLAFMGP--EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDF  257 (487)
T ss_dssp             CSSCCCEECG--GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHH
T ss_pred             CCCCCCCCCH--hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHH
Confidence            5555543222  24444555555555555443 3444444445555555555544 344433

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.92  E-value=3.7e-28  Score=259.00  Aligned_cols=408  Identities=15%  Similarity=0.066  Sum_probs=256.8

Q ss_pred             ccCCCCCCEEeCCCCcCCCCccCcccC-CCCCCCEEeCCCC-cCCCC-CccccCCCCCCCEEeccCCCCCCCccccCCcc
Q 047285          122 LVDLKHLIHLDLSGNDFEGIQIPKYLG-SLENLRYLNLSGA-KFAGM-IPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLS  198 (552)
Q Consensus       122 l~~l~~L~~L~Ls~n~~~~~~~p~~~~-~l~~L~~L~L~~~-~~~~~-lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~  198 (552)
                      ...+++|++|++++|.+++ ..+..+. .+++|++|++++| .++.. ++..+.++++|++|++++|.++....  ..++
T Consensus       101 ~~~~~~L~~L~L~~~~~~~-~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~--~~l~  177 (594)
T 2p1m_B          101 SSSYTWLEEIRLKRMVVTD-DCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSG--HWLS  177 (594)
T ss_dssp             HHHCTTCCEEEEESCBCCH-HHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCG--GGGG
T ss_pred             HHhCCCCCeEEeeCcEEcH-HHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcch--HHHH
Confidence            3578899999999998876 3455554 6889999999988 44432 44455688999999999887654321  1122


Q ss_pred             c-cCCCCCCCEEeCCCCc-CCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCC--C-CCccc
Q 047285          199 W-LSGLYMLEHLDLSQMN-LSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFD--N-SLFQY  273 (552)
Q Consensus       199 ~-l~~l~~L~~L~ls~n~-~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~--~-~~~~~  273 (552)
                      . ...+++|++|++++|. ......+......+++|++|++++|...+..+..+..+++|+.|+++.+...  . .+...
T Consensus       178 ~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l  257 (594)
T 2p1m_B          178 HFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGL  257 (594)
T ss_dssp             GSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHH
T ss_pred             HHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHH
Confidence            2 2367899999999886 1111223334456899999999988433335666777888999987655321  0 00111


Q ss_pred             cccccCCCCccEE-eccCccccccCchhhhcccCCcEEeccCCCCCCCCC-ccCCCCCCCCEEEccCccceeecCccccC
Q 047285          274 GSWVFGLRNLVFI-DLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTP-GWLSKFNDLEFLSVAWNSLQGTISSVGLE  351 (552)
Q Consensus       274 ~~~~~~l~~L~~L-~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~l~  351 (552)
                      ...+.++++|+.+ .+.+... +.++..+..+++|++|++++|.+++... ..+..+++|++|++++| +.+........
T Consensus       258 ~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~  335 (594)
T 2p1m_B          258 SVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLAS  335 (594)
T ss_dssp             HHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHH
T ss_pred             HHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHH
Confidence            1145677888888 4444332 2455555678889999999888654322 23467888999999887 43222222133


Q ss_pred             CCCccCEEeCCC--------CCCCCCCCchhHh-hcccCceeecccccCCCCCccccccccccCCCCCCEEEcc--C---
Q 047285          352 NLTSIETLDLSG--------NSKLGGKIPTSFA-RLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLS--I---  417 (552)
Q Consensus       352 ~l~~L~~L~l~~--------n~~l~~~~~~~~~-~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls--~---  417 (552)
                      .+++|+.|++++        +..+++.....+. .+++|+.+.+............+    ...+++|+.|+++  +   
T Consensus       336 ~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l----~~~~~~L~~L~L~~~~~~~  411 (594)
T 2p1m_B          336 TCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITI----ARNRPNMTRFRLCIIEPKA  411 (594)
T ss_dssp             HCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHH----HHHCTTCCEEEEEESSTTC
T ss_pred             hCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHH----HhhCCCcceeEeecccCCC
Confidence            578888888833        2224443333343 47778877654433322111111    1135688999988  3   


Q ss_pred             -CcCccc-----CchhhcCCCCCcEEECCCCcccCCCcccccC-CCCCCEEeCCCCcCCccCcccc-cCCCCCCeeeCCC
Q 047285          418 -CQISGH-----LTNQLLQFKSLHTLELGHNSLFGPLPPALGE-LSSLKKLDLSNNMLNGFIPLSL-GKLSHLEYLDLSN  489 (552)
Q Consensus       418 -n~~~~~-----~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~-l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~  489 (552)
                       +.+++.     ++..+..+++|+.|++++ .+++..+..+.. +++|++|++++|.+++..+..+ ..+++|++|+|++
T Consensus       412 ~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~  490 (594)
T 2p1m_B          412 PDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRD  490 (594)
T ss_dssp             CCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEES
T ss_pred             cccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcC
Confidence             455522     222356788899999977 666555555554 7889999999998876544444 5688899999999


Q ss_pred             cccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCC-cCcccccEEecCCC
Q 047285          490 NKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNW-VPPFQLETLQLRSC  539 (552)
Q Consensus       490 n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~-~~~~~L~~L~l~~n  539 (552)
                      |++++.........+++|++|++++|+++......+ ..+++++...+..+
T Consensus       491 n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~  541 (594)
T 2p1m_B          491 CPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER  541 (594)
T ss_dssp             CSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred             CCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence            988655444345568889999999998853322222 23445544444444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=3.5e-25  Score=228.63  Aligned_cols=240  Identities=24%  Similarity=0.272  Sum_probs=205.8

Q ss_pred             cccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCcccc
Q 047285          121 SLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWL  200 (552)
Q Consensus       121 ~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l  200 (552)
                      ....+++|++|+|++|.+.+. .|..|+.+++|++|+|++|.+++..|  ++.+++|++|++++|.++.++         
T Consensus        29 l~~~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~---------   96 (487)
T 3oja_A           29 LRQSAWNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL---------   96 (487)
T ss_dssp             TSTTGGGCCEEECCSSCCCCC-CGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE---------
T ss_pred             hcccCCCccEEEeeCCcCCCC-CHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC---------
Confidence            344566999999999999974 67899999999999999999987655  999999999999999877643         


Q ss_pred             CCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCcccccccc-C
Q 047285          201 SGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVF-G  279 (552)
Q Consensus       201 ~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~  279 (552)
                       ..++|++|++++|.+.+.+.     ..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+.   .+. .
T Consensus        97 -~~~~L~~L~L~~N~l~~~~~-----~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---~l~~~  167 (487)
T 3oja_A           97 -VGPSIETLHAANNNISRVSC-----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA---ELAAS  167 (487)
T ss_dssp             -ECTTCCEEECCSSCCCCEEE-----CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGG---GGGGG
T ss_pred             -CCCCcCEEECcCCcCCCCCc-----cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChH---HHhhh
Confidence             33899999999999988432     3578999999999999999999999999999999999999998776   554 7


Q ss_pred             CCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEE
Q 047285          280 LRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETL  359 (552)
Q Consensus       280 l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L  359 (552)
                      +++|++|++++|.+++. + ....+++|++|++++|.+++..+. +..+++|+.|++++|.+++ +|.. +..+++|+.|
T Consensus       168 l~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~-lp~~-l~~l~~L~~L  242 (487)
T 3oja_A          168 SDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVL-IEKA-LRFSQNLEHF  242 (487)
T ss_dssp             TTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCE-ECTT-CCCCTTCCEE
T ss_pred             CCcccEEecCCCccccc-c-ccccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcc-cchh-hccCCCCCEE
Confidence            89999999999999865 3 244689999999999999976554 8889999999999999994 7776 8899999999


Q ss_pred             eCCCCCCCC-CCCchhHhhcccCceeecc
Q 047285          360 DLSGNSKLG-GKIPTSFARLCKLTSVDLS  387 (552)
Q Consensus       360 ~l~~n~~l~-~~~~~~~~~l~~L~~l~l~  387 (552)
                      ++++|+ +. +.+|.++..++.++.+++.
T Consensus       243 ~l~~N~-l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          243 DLRGNG-FHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             ECTTCC-BCHHHHHHHHTTCHHHHHHHHH
T ss_pred             EcCCCC-CcCcchHHHHHhCCCCcEEecc
Confidence            999998 55 6778888888866666654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.91  E-value=7.3e-25  Score=208.99  Aligned_cols=206  Identities=24%  Similarity=0.244  Sum_probs=118.6

Q ss_pred             hcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCCCCCCCCCchhHhhcccC
Q 047285          302 RNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKL  381 (552)
Q Consensus       302 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L  381 (552)
                      ..+++|+.|++++|.++..  ..+..+++|++|++++|.+++ ++  .+..+++|++|++++|. +++..+..+..++  
T Consensus        38 ~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~--  109 (272)
T 3rfs_A           38 NELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD-IS--ALKELTNLTYLILTGNQ-LQSLPNGVFDKLT--  109 (272)
T ss_dssp             HHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC-CG--GGTTCTTCCEEECTTSC-CCCCCTTTTTTCT--
T ss_pred             ccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC-ch--hhcCCCCCCEEECCCCc-cCccChhHhcCCc--
Confidence            3445555555555554422  224455555555555555543 22  25556666666666665 5444333333333  


Q ss_pred             ceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEE
Q 047285          382 TSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKL  461 (552)
Q Consensus       382 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  461 (552)
                                                 +|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|
T Consensus       110 ---------------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  162 (272)
T 3rfs_A          110 ---------------------------NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTEL  162 (272)
T ss_dssp             ---------------------------TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             ---------------------------CCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEE
Confidence                                       56666666666665555555666666666666666665555555666666666


Q ss_pred             eCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcccccEEecCCCCC
Q 047285          462 DLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHL  541 (552)
Q Consensus       462 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~  541 (552)
                      ++++|.+++..+..+..+++|++|++++|++++..+. .+..+++|++|++++|++.+.+       ++|+.++++.|++
T Consensus       163 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~l~~N~~~~~~-------~~l~~l~~~~n~~  234 (272)
T 3rfs_A          163 DLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDG-VFDRLTSLQYIWLHDNPWDCTC-------PGIRYLSEWINKH  234 (272)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT-TTTTCTTCCEEECCSSCBCCCT-------TTTHHHHHHHHHT
T ss_pred             ECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHH-HHhCCcCCCEEEccCCCccccC-------cHHHHHHHHHHhC
Confidence            6666666655555556666666666666666554443 4566666666666666665443       2466666666666


Q ss_pred             CCCCCcccc
Q 047285          542 GPHFPSWLH  550 (552)
Q Consensus       542 ~~~iP~~l~  550 (552)
                      +|.+|.+++
T Consensus       235 ~g~ip~~~~  243 (272)
T 3rfs_A          235 SGVVRNSAG  243 (272)
T ss_dssp             GGGBBCTTS
T ss_pred             CCcccCccc
Confidence            666666654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=1.8e-23  Score=199.92  Aligned_cols=209  Identities=22%  Similarity=0.193  Sum_probs=157.9

Q ss_pred             CCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEe
Q 047285          281 RNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLD  360 (552)
Q Consensus       281 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~  360 (552)
                      ++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.++++|++|++++|.+++..+.. +..+++|++|+
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~  106 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA-FSGLSSLQKLV  106 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT-TTTCTTCCEEE
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhh-hcCCccccEEE
Confidence            46888888888887666667788888888888888887777777888888888888888887544444 77888888888


Q ss_pred             CCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCccc-CchhhcCCCCCcEEEC
Q 047285          361 LSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGH-LTNQLLQFKSLHTLEL  439 (552)
Q Consensus       361 l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~-~~~~l~~l~~L~~L~L  439 (552)
                      +++|. +.+..+..+.                             .+++|++|++++|.+++. +|..+..+++|+.|++
T Consensus       107 l~~n~-l~~~~~~~~~-----------------------------~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~L  156 (276)
T 2z62_A          107 AVETN-LASLENFPIG-----------------------------HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL  156 (276)
T ss_dssp             CTTSC-CCCSTTCCCT-----------------------------TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEEC
T ss_pred             CCCCC-ccccCchhcc-----------------------------cCCCCCEEECcCCccceecCchhhccCCCCCEEEC
Confidence            88886 5543333333                             334788888888888764 5788888889999999


Q ss_pred             CCCcccCCCcccccCCCCCC----EEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCC
Q 047285          440 GHNSLFGPLPPALGELSSLK----KLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGN  515 (552)
Q Consensus       440 ~~n~l~~~~~~~l~~l~~L~----~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n  515 (552)
                      ++|++++..+..+..+++|+    +|++++|.+++..+..+ ...+|++|++++|++++..+. .+..+++|++|++++|
T Consensus       157 s~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~N  234 (276)
T 2z62_A          157 SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDG-IFDRLTSLQKIWLHTN  234 (276)
T ss_dssp             CSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTT-TTTTCCSCCEEECCSS
T ss_pred             CCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHh-HhcccccccEEEccCC
Confidence            99988876666776666666    88889988885444443 345788899999888654443 6788888889999988


Q ss_pred             eeeEEcC
Q 047285          516 SLILKFN  522 (552)
Q Consensus       516 ~~~~~~~  522 (552)
                      ++.+.++
T Consensus       235 ~~~c~c~  241 (276)
T 2z62_A          235 PWDCSCP  241 (276)
T ss_dssp             CBCCCTT
T ss_pred             cccccCC
Confidence            8887765

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.90  E-value=2e-22  Score=192.73  Aligned_cols=208  Identities=27%  Similarity=0.302  Sum_probs=135.5

Q ss_pred             CCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCCCCC
Q 047285          127 HLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYML  206 (552)
Q Consensus       127 ~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L  206 (552)
                      +|++|++++|.+++. .+..+..+++|++|++++|++++..+..+.++++|++|++++|.++.++               
T Consensus        29 ~l~~L~ls~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~---------------   92 (276)
T 2z62_A           29 STKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA---------------   92 (276)
T ss_dssp             TCCEEECTTCCCCEE-CTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC---------------
T ss_pred             CccEEECCCCccccc-CHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccC---------------
Confidence            456666666655532 2335555566666666666555444445555555555555555444332               


Q ss_pred             CEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCC-CccccccccCCCCccE
Q 047285          207 EHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNS-LFQYGSWVFGLRNLVF  285 (552)
Q Consensus       207 ~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~~~l~~L~~  285 (552)
                                      +..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. ++.   .+..+++|++
T Consensus        93 ----------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~---~~~~l~~L~~  153 (276)
T 2z62_A           93 ----------------LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE---YFSNLTNLEH  153 (276)
T ss_dssp             ----------------TTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG---GGGGCTTCCE
T ss_pred             ----------------hhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCch---hhccCCCCCE
Confidence                            23345556666666666666666665666777777777777776653 344   6677788888


Q ss_pred             EeccCccccccCchhhhcccCCc----EEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeC
Q 047285          286 IDLSSNQFQGQIPIGLRNLTSLR----HLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDL  361 (552)
Q Consensus       286 L~L~~n~~~~~~~~~l~~l~~L~----~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l  361 (552)
                      |++++|.+++..+..+..+++|+    +|++++|.+++..+..+.. .+|++|++++|+++ .++...+..+++|+.|++
T Consensus       154 L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l  231 (276)
T 2z62_A          154 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLK-SVPDGIFDRLTSLQKIWL  231 (276)
T ss_dssp             EECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCS-CCCTTTTTTCCSCCEEEC
T ss_pred             EECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCcee-ecCHhHhcccccccEEEc
Confidence            88888888776666677666666    7888888887665554443 47888888888887 455544788889999999


Q ss_pred             CCCCCCCCCCc
Q 047285          362 SGNSKLGGKIP  372 (552)
Q Consensus       362 ~~n~~l~~~~~  372 (552)
                      ++|+ +.+..+
T Consensus       232 ~~N~-~~c~c~  241 (276)
T 2z62_A          232 HTNP-WDCSCP  241 (276)
T ss_dssp             CSSC-BCCCTT
T ss_pred             cCCc-ccccCC
Confidence            9888 665543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=4.8e-22  Score=189.26  Aligned_cols=204  Identities=22%  Similarity=0.279  Sum_probs=169.0

Q ss_pred             CCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCCCCC
Q 047285          127 HLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYML  206 (552)
Q Consensus       127 ~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L  206 (552)
                      ..++++++++.++  .+|..+.  ++|++|++++|++++..+..+.++++|++|++++|.++.++.              
T Consensus        17 ~~~~l~~~~~~l~--~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~--------------   78 (270)
T 2o6q_A           17 NKNSVDCSSKKLT--AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPA--------------   78 (270)
T ss_dssp             TTTEEECTTSCCS--SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCT--------------
T ss_pred             CCCEEEccCCCCC--ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeCh--------------
Confidence            5778899888888  4676554  678888888888886666678888888888888887665442              


Q ss_pred             CEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCCccEE
Q 047285          207 EHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFI  286 (552)
Q Consensus       207 ~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L  286 (552)
                                       ..+..+++|++|++++|.+.+.++..+..+++|++|++++|.+++..+.   .+..+++|++|
T Consensus        79 -----------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L  138 (270)
T 2o6q_A           79 -----------------GIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPR---VFDSLTKLTYL  138 (270)
T ss_dssp             -----------------TTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTT---TTTTCTTCCEE
T ss_pred             -----------------hhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHH---HhCcCcCCCEE
Confidence                             1234566777777777777777778888999999999999999988776   77889999999


Q ss_pred             eccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCCCC
Q 047285          287 DLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSK  366 (552)
Q Consensus       287 ~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~  366 (552)
                      ++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|+++ .++...+..+++|+.|++++|+ 
T Consensus       139 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~-  216 (270)
T 2o6q_A          139 SLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQENP-  216 (270)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSC-
T ss_pred             ECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC-cCCHHHhccccCCCEEEecCCC-
Confidence            99999999766667899999999999999999988888999999999999999998 4555558899999999999998 


Q ss_pred             CCCC
Q 047285          367 LGGK  370 (552)
Q Consensus       367 l~~~  370 (552)
                      +...
T Consensus       217 ~~c~  220 (270)
T 2o6q_A          217 WDCT  220 (270)
T ss_dssp             BCCS
T ss_pred             eeCC
Confidence            6543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=1.5e-23  Score=199.81  Aligned_cols=211  Identities=21%  Similarity=0.236  Sum_probs=143.1

Q ss_pred             ccCCCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCcc
Q 047285          277 VFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSI  356 (552)
Q Consensus       277 ~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L  356 (552)
                      ...+++|+.|++++|.+.. + ..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++..+. .+..+++|
T Consensus        37 ~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L  111 (272)
T 3rfs_A           37 QNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNG-VFDKLTNL  111 (272)
T ss_dssp             HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTT-TTTTCTTC
T ss_pred             cccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChh-HhcCCcCC
Confidence            3455667777777776652 2 2466677777777777776653  3566777777777777777643333 36777777


Q ss_pred             CEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcE
Q 047285          357 ETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHT  436 (552)
Q Consensus       357 ~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~  436 (552)
                      ++|++++|. +++..+..+..++                             +|++|++++|.+++..+..+..+++|+.
T Consensus       112 ~~L~L~~n~-l~~~~~~~~~~l~-----------------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~  161 (272)
T 3rfs_A          112 KELVLVENQ-LQSLPDGVFDKLT-----------------------------NLTYLNLAHNQLQSLPKGVFDKLTNLTE  161 (272)
T ss_dssp             CEEECTTSC-CCCCCTTTTTTCT-----------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CEEECCCCc-CCccCHHHhccCC-----------------------------CCCEEECCCCccCccCHHHhccCccCCE
Confidence            777777776 6554444444443                             6777777777777666666677777777


Q ss_pred             EECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCe
Q 047285          437 LELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNS  516 (552)
Q Consensus       437 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~  516 (552)
                      |++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++.+.        +++|+.+++..|.
T Consensus       162 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~--------~~~l~~l~~~~n~  233 (272)
T 3rfs_A          162 LDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT--------CPGIRYLSEWINK  233 (272)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC--------TTTTHHHHHHHHH
T ss_pred             EECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc--------CcHHHHHHHHHHh
Confidence            77777777766666667777777777777777766666677777778888877777543        3456677777777


Q ss_pred             eeEEcCCCCcCccc
Q 047285          517 LILKFNPNWVPPFQ  530 (552)
Q Consensus       517 ~~~~~~~~~~~~~~  530 (552)
                      +.|.+|..+..+..
T Consensus       234 ~~g~ip~~~~~~~~  247 (272)
T 3rfs_A          234 HSGVVRNSAGSVAP  247 (272)
T ss_dssp             TGGGBBCTTSCBCG
T ss_pred             CCCcccCcccccCC
Confidence            77777776665543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.89  E-value=3.2e-24  Score=211.55  Aligned_cols=253  Identities=20%  Similarity=0.205  Sum_probs=118.5

Q ss_pred             CCCEEEcCCCCCCCCCCCcccCC--CCCceeecCCCCCCCCCccccccccCCCCccEEeccCcccccc-CchhhhcccCC
Q 047285          231 SLKVLKLTKCQLCHFPPLLSANF--SSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQ-IPIGLRNLTSL  307 (552)
Q Consensus       231 ~L~~L~l~~n~~~~~~~~~~~~l--~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~-~~~~l~~l~~L  307 (552)
                      .++.++++++.+.   +..+..+  ++++.|++++|.+.+..+.    +..+++|++|++++|.+++. ++..+..+++|
T Consensus        48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~----~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L  120 (336)
T 2ast_B           48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE----HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKL  120 (336)
T ss_dssp             TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS----CCCCBCCCEEECTTCEECHHHHHHHHTTBCCC
T ss_pred             hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh----hccCCCCCEEEccCCCcCHHHHHHHHhhCCCC
Confidence            4666777666554   2333333  4555555555555544333    22445555555555555433 44444555555


Q ss_pred             cEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCCCCCCCC-CchhHhhcccCceeec
Q 047285          308 RHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGK-IPTSFARLCKLTSVDL  386 (552)
Q Consensus       308 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~-~~~~~~~l~~L~~l~l  386 (552)
                      ++|++++|.+++..+..+..+                         ++|++|++++|..+++. ++..+..++       
T Consensus       121 ~~L~L~~~~l~~~~~~~l~~~-------------------------~~L~~L~L~~~~~l~~~~l~~~~~~~~-------  168 (336)
T 2ast_B          121 QNLSLEGLRLSDPIVNTLAKN-------------------------SNLVRLNLSGCSGFSEFALQTLLSSCS-------  168 (336)
T ss_dssp             SEEECTTCBCCHHHHHHHTTC-------------------------TTCSEEECTTCBSCCHHHHHHHHHHCT-------
T ss_pred             CEEeCcCcccCHHHHHHHhcC-------------------------CCCCEEECCCCCCCCHHHHHHHHhcCC-------
Confidence            555555554444333334444                         44444444444213221 222222222       


Q ss_pred             ccccCCCCCccccccccccCCCCCCEEEccCC-cCccc-CchhhcCCC-CCcEEECCCC--ccc-CCCcccccCCCCCCE
Q 047285          387 SLIDLSQDFSQVLDTFSSCGAYALESLDLSIC-QISGH-LTNQLLQFK-SLHTLELGHN--SLF-GPLPPALGELSSLKK  460 (552)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n-~~~~~-~~~~l~~l~-~L~~L~L~~n--~l~-~~~~~~l~~l~~L~~  460 (552)
                                            +|++|++++| .+++. ++..+..++ +|++|++++|  .++ +.++..+..+++|++
T Consensus       169 ----------------------~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~  226 (336)
T 2ast_B          169 ----------------------RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH  226 (336)
T ss_dssp             ----------------------TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSE
T ss_pred             ----------------------CCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCE
Confidence                                  4555555555 44432 334444455 5555555555  232 233444445555555


Q ss_pred             EeCCCCc-CCccCcccccCCCCCCeeeCCCcc-cceecCHHhhhcCCCCCEEEccCCeeeEEcCC-CCcCc-ccccEEec
Q 047285          461 LDLSNNM-LNGFIPLSLGKLSHLEYLDLSNNK-LNASLSEIHFVNLTKLTWFSASGNSLILKFNP-NWVPP-FQLETLQL  536 (552)
Q Consensus       461 L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~~-~~L~~L~l  536 (552)
                      |++++|. +++..+..+..+++|++|++++|. ++..... .+.++++|++|++++|     ++. .+..+ .+++.|++
T Consensus       227 L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~l~~~~~L~~L~l~~~-----i~~~~~~~l~~~l~~L~l  300 (336)
T 2ast_B          227 LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLL-ELGEIPTLKTLQVFGI-----VPDGTLQLLKEALPHLQI  300 (336)
T ss_dssp             EECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTS-----SCTTCHHHHHHHSTTSEE
T ss_pred             EeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHH-HHhcCCCCCEEeccCc-----cCHHHHHHHHhhCcceEE
Confidence            5555555 444444455555555555555553 2111111 3445555555555555     222 12222 23555555


Q ss_pred             CCCCCCCCCCcccc
Q 047285          537 RSCHLGPHFPSWLH  550 (552)
Q Consensus       537 ~~n~~~~~iP~~l~  550 (552)
                      ++|++++..|.+++
T Consensus       301 ~~n~l~~~~~~~~~  314 (336)
T 2ast_B          301 NCSHFTTIARPTIG  314 (336)
T ss_dssp             SCCCSCCTTCSSCS
T ss_pred             ecccCccccCCccc
Confidence            66666665555544

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=5.6e-22  Score=190.47  Aligned_cols=202  Identities=23%  Similarity=0.256  Sum_probs=136.3

Q ss_pred             cccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCcccc
Q 047285          121 SLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWL  200 (552)
Q Consensus       121 ~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l  200 (552)
                      .+.+++++++++++++.++  .+|..+.  +++++|++++|++++..|..+.++++|++|++++|.++.++.       .
T Consensus         5 ~~~~l~~l~~l~~~~~~l~--~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-------~   73 (290)
T 1p9a_G            5 EVSKVASHLEVNCDKRNLT--ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-------D   73 (290)
T ss_dssp             EEECSTTCCEEECTTSCCS--SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-------C
T ss_pred             cccccCCccEEECCCCCCC--cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC-------C
Confidence            3678999999999999998  5777664  789999999999998778889999999999999998876543       3


Q ss_pred             CCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCC
Q 047285          201 SGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGL  280 (552)
Q Consensus       201 ~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l  280 (552)
                      ..+++|++|++++|.+..   ++..+..+++|++|++++|.+++.++..+..+++|+.|++++|.+.+..          
T Consensus        74 ~~l~~L~~L~Ls~N~l~~---l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~----------  140 (290)
T 1p9a_G           74 GTLPVLGTLDLSHNQLQS---LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP----------  140 (290)
T ss_dssp             SCCTTCCEEECCSSCCSS---CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCC----------
T ss_pred             CCCCcCCEEECCCCcCCc---CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccC----------
Confidence            567788888888887765   3344566677777777777776666655555555555555555554433          


Q ss_pred             CCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEe
Q 047285          281 RNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLD  360 (552)
Q Consensus       281 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~  360 (552)
                                       +..+..+++|+.|++++|++++..+..+..+++|++|++++|+++ .+|.. +...++|+.++
T Consensus       141 -----------------~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~-~~~~~~L~~l~  201 (290)
T 1p9a_G          141 -----------------PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKG-FFGSHLLPFAF  201 (290)
T ss_dssp             -----------------TTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTT-TTTTCCCSEEE
T ss_pred             -----------------hhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChh-hcccccCCeEE
Confidence                             333444455555555555555444444455555555555555555 44444 44445666666


Q ss_pred             CCCCC
Q 047285          361 LSGNS  365 (552)
Q Consensus       361 l~~n~  365 (552)
                      +++|+
T Consensus       202 L~~Np  206 (290)
T 1p9a_G          202 LHGNP  206 (290)
T ss_dssp             CCSCC
T ss_pred             eCCCC
Confidence            66665

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=5e-22  Score=190.77  Aligned_cols=204  Identities=21%  Similarity=0.164  Sum_probs=109.4

Q ss_pred             ccCCCCCceeecCCCCCCCCCccccccccCCCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCC
Q 047285          250 SANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFN  329 (552)
Q Consensus       250 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~  329 (552)
                      +.++++++.++++++.++...+.    +  .+++++|++++|.+++..+..+..+++|++|++++|.+++..+.  ..++
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~~----~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~   77 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPPD----L--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLP   77 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCSC----C--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCT
T ss_pred             ccccCCccEEECCCCCCCcCCCC----C--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCC
Confidence            34455566666666555533222    1  14556666666666555555555566666666666655543221  4555


Q ss_pred             CCCEEEccCccceeecCccccCCCCccCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCC
Q 047285          330 DLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYA  409 (552)
Q Consensus       330 ~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~  409 (552)
                      +|++|++++|.++ .+|.. +..+++|+.|++++|. +++..+..|..++                             +
T Consensus        78 ~L~~L~Ls~N~l~-~l~~~-~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~-----------------------------~  125 (290)
T 1p9a_G           78 VLGTLDLSHNQLQ-SLPLL-GQTLPALTVLDVSFNR-LTSLPLGALRGLG-----------------------------E  125 (290)
T ss_dssp             TCCEEECCSSCCS-SCCCC-TTTCTTCCEEECCSSC-CCCCCSSTTTTCT-----------------------------T
T ss_pred             cCCEEECCCCcCC-cCchh-hccCCCCCEEECCCCc-CcccCHHHHcCCC-----------------------------C
Confidence            5555555555555 44443 4555555555555554 4433333333332                             5


Q ss_pred             CCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCC
Q 047285          410 LESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSN  489 (552)
Q Consensus       410 L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  489 (552)
                      |++|++++|++++..+..+..+++|+.|++++|++++..+..+..+++|++|++++|+++ .+|..+...++|+.+++++
T Consensus       126 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~  204 (290)
T 1p9a_G          126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHG  204 (290)
T ss_dssp             CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCS
T ss_pred             CCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCC
Confidence            556666666665555555555566666666666665433334455566666666666655 4555555555566666666


Q ss_pred             cccce
Q 047285          490 NKLNA  494 (552)
Q Consensus       490 n~l~~  494 (552)
                      |++..
T Consensus       205 Np~~C  209 (290)
T 1p9a_G          205 NPWLC  209 (290)
T ss_dssp             CCBCC
T ss_pred             CCccC
Confidence            65543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.88  E-value=6.7e-24  Score=211.16  Aligned_cols=261  Identities=21%  Similarity=0.232  Sum_probs=166.9

Q ss_pred             EEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCcc-ccccccCCC-CccEEeccCccccccCchhhhcc-----cC
Q 047285          234 VLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQ-YGSWVFGLR-NLVFIDLSSNQFQGQIPIGLRNL-----TS  306 (552)
Q Consensus       234 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~l~-~L~~L~L~~n~~~~~~~~~l~~l-----~~  306 (552)
                      .++++.|.+++.+|..+...++|++|++++|.+++..+. ....+..++ +|++|++++|.+++..+..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            356777777777776666666788888888877766541 001455666 78888888888776666666654     77


Q ss_pred             CcEEeccCCCCCCCCCccC----CCC-CCCCEEEccCccceeecCcc---ccCC-CCccCEEeCCCCCCCCCCCchhHhh
Q 047285          307 LRHLDLRFNYFNSTTPGWL----SKF-NDLEFLSVAWNSLQGTISSV---GLEN-LTSIETLDLSGNSKLGGKIPTSFAR  377 (552)
Q Consensus       307 L~~L~l~~n~l~~~~~~~l----~~l-~~L~~L~l~~n~l~~~~~~~---~l~~-l~~L~~L~l~~n~~l~~~~~~~~~~  377 (552)
                      |++|++++|.+++..+..+    ..+ ++|++|++++|.+++..+..   .+.. .++|++|++++|. +++..+..+..
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~  160 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDELIQ  160 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHHH
Confidence            8888888887776655433    333 67777777777776433221   1223 3577777777776 65444433322


Q ss_pred             cccCceeecccccCCCCCccccccccccCC-CCCCEEEccCCcCcccCchhhc----CC-CCCcEEECCCCcccCC----
Q 047285          378 LCKLTSVDLSLIDLSQDFSQVLDTFSSCGA-YALESLDLSICQISGHLTNQLL----QF-KSLHTLELGHNSLFGP----  447 (552)
Q Consensus       378 l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~ls~n~~~~~~~~~l~----~l-~~L~~L~L~~n~l~~~----  447 (552)
                      .-                         ... ++|++|++++|.+++..+..+.    .+ ++|++|++++|++++.    
T Consensus       161 ~l-------------------------~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~  215 (362)
T 3goz_A          161 IL-------------------------AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAE  215 (362)
T ss_dssp             HH-------------------------HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHH
T ss_pred             HH-------------------------hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHH
Confidence            10                         011 2688888888888776654433    34 5888888888888753    


Q ss_pred             CcccccC-CCCCCEEeCCCCcCCccCc----ccccCCCCCCeeeCCCcccceecCH------HhhhcCCCCCEEEccCCe
Q 047285          448 LPPALGE-LSSLKKLDLSNNMLNGFIP----LSLGKLSHLEYLDLSNNKLNASLSE------IHFVNLTKLTWFSASGNS  516 (552)
Q Consensus       448 ~~~~l~~-l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~------~~~~~l~~L~~L~L~~n~  516 (552)
                      ++..+.. .++|++|++++|.+++..+    ..+..+++|++|++++|.+.+..+.      ..+..+++|++|++++|+
T Consensus       216 l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~  295 (362)
T 3goz_A          216 LAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE  295 (362)
T ss_dssp             HHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred             HHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence            3444444 3578888888888875433    3345677888888888874322111      034566777788888888


Q ss_pred             eeEE
Q 047285          517 LILK  520 (552)
Q Consensus       517 ~~~~  520 (552)
                      +...
T Consensus       296 l~~~  299 (362)
T 3goz_A          296 IHPS  299 (362)
T ss_dssp             CCGG
T ss_pred             CCCc
Confidence            7655

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.88  E-value=2.1e-23  Score=207.59  Aligned_cols=259  Identities=21%  Similarity=0.213  Sum_probs=173.6

Q ss_pred             EeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCC----CcccCCC-CCceeecCCCCCCCCCccccccccCC---
Q 047285          209 LDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPP----LLSANFS-SLKALHLAINNFDNSLFQYGSWVFGL---  280 (552)
Q Consensus       209 L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~----~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~~~l---  280 (552)
                      ++++.|.+++  .++..+...++|++|++++|.+++..+    ..+..++ +|++|++++|.+++..+.   .+..+   
T Consensus         3 ~~ls~n~~~~--~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~---~l~~~l~~   77 (362)
T 3goz_A            3 YKLTLHPGSN--PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSD---ELVQILAA   77 (362)
T ss_dssp             EECCCCTTCC--HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHH---HHHHHHHT
T ss_pred             cccccccchH--HHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHH---HHHHHHhc
Confidence            3455555554  344445555557777777777666655    5555666 677777777776665444   33332   


Q ss_pred             --CCccEEeccCccccccCchhhhc----c-cCCcEEeccCCCCCCCCCccC----CC-CCCCCEEEccCccceeecCcc
Q 047285          281 --RNLVFIDLSSNQFQGQIPIGLRN----L-TSLRHLDLRFNYFNSTTPGWL----SK-FNDLEFLSVAWNSLQGTISSV  348 (552)
Q Consensus       281 --~~L~~L~L~~n~~~~~~~~~l~~----l-~~L~~L~l~~n~l~~~~~~~l----~~-l~~L~~L~l~~n~l~~~~~~~  348 (552)
                        ++|++|++++|.+++..+..+..    + ++|++|++++|.+++..+..+    .. .++|++|++++|.+++.....
T Consensus        78 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~  157 (362)
T 3goz_A           78 IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDE  157 (362)
T ss_dssp             SCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHH
T ss_pred             cCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHH
Confidence              78888888888887666654443    3 788888888888876655443    33 358888888888887422211


Q ss_pred             ---ccCCCC-ccCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCC-CCCCEEEccCCcCccc
Q 047285          349 ---GLENLT-SIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGA-YALESLDLSICQISGH  423 (552)
Q Consensus       349 ---~l~~l~-~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~ls~n~~~~~  423 (552)
                         .+...+ +|++|++++|. +++..+..+...-                         ... ++|++|++++|.+++.
T Consensus       158 l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l-------------------------~~~~~~L~~L~Ls~N~i~~~  211 (362)
T 3goz_A          158 LIQILAAIPANVNSLNLRGNN-LASKNCAELAKFL-------------------------ASIPASVTSLDLSANLLGLK  211 (362)
T ss_dssp             HHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHH-------------------------HTSCTTCCEEECTTSCGGGS
T ss_pred             HHHHHhcCCccccEeeecCCC-CchhhHHHHHHHH-------------------------HhCCCCCCEEECCCCCCChh
Confidence               134444 89999999997 7777766655431                         012 2788999999988863


Q ss_pred             ----CchhhcC-CCCCcEEECCCCcccCCCc----ccccCCCCCCEEeCCCCcCCcc-------CcccccCCCCCCeeeC
Q 047285          424 ----LTNQLLQ-FKSLHTLELGHNSLFGPLP----PALGELSSLKKLDLSNNMLNGF-------IPLSLGKLSHLEYLDL  487 (552)
Q Consensus       424 ----~~~~l~~-l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~L~~n~l~~~-------~~~~~~~l~~L~~L~L  487 (552)
                          ++..+.. .++|++|++++|++++..+    ..+..+++|++|++++|.+.+.       ++..+..+++|+.|++
T Consensus       212 ~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL  291 (362)
T 3goz_A          212 SYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDK  291 (362)
T ss_dssp             CHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECT
T ss_pred             HHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEec
Confidence                3445555 4589999999999886544    3446778899999999985432       3345677888999999


Q ss_pred             CCcccceecCH
Q 047285          488 SNNKLNASLSE  498 (552)
Q Consensus       488 ~~n~l~~~~~~  498 (552)
                      ++|++.+..+.
T Consensus       292 ~~N~l~~~~~~  302 (362)
T 3goz_A          292 NGKEIHPSHSI  302 (362)
T ss_dssp             TSCBCCGGGCH
T ss_pred             CCCcCCCcchH
Confidence            99998776554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.88  E-value=7.1e-24  Score=213.09  Aligned_cols=249  Identities=20%  Similarity=0.207  Sum_probs=123.6

Q ss_pred             ccCCCCccEEeccCccccccCc----hhhhcccCCcEEeccCCC---CCCCCCccC-------CCCCCCCEEEccCccce
Q 047285          277 VFGLRNLVFIDLSSNQFQGQIP----IGLRNLTSLRHLDLRFNY---FNSTTPGWL-------SKFNDLEFLSVAWNSLQ  342 (552)
Q Consensus       277 ~~~l~~L~~L~L~~n~~~~~~~----~~l~~l~~L~~L~l~~n~---l~~~~~~~l-------~~l~~L~~L~l~~n~l~  342 (552)
                      +..+++|++|++++|.+.+..+    ..+..+++|++|++++|.   +++.+|..+       ..+++|++|++++|.+.
T Consensus        28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~  107 (386)
T 2ca6_A           28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG  107 (386)
T ss_dssp             HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred             HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence            3344555555555555544322    223445555555555532   222333222       45556666666666555


Q ss_pred             e----ecCccccCCCCccCEEeCCCCCCCCCCCchhHhhc-ccCceeecccccCCCCCccccccccccCCCCCCEEEccC
Q 047285          343 G----TISSVGLENLTSIETLDLSGNSKLGGKIPTSFARL-CKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSI  417 (552)
Q Consensus       343 ~----~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l-~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~  417 (552)
                      +    .++.. +..+++|+.|++++|. +++..+..+... ..+....+.                 ...++|++|++++
T Consensus       108 ~~~~~~l~~~-l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~-----------------~~~~~L~~L~L~~  168 (386)
T 2ca6_A          108 PTAQEPLIDF-LSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKA-----------------KNAPPLRSIICGR  168 (386)
T ss_dssp             TTTHHHHHHH-HHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHH-----------------HTCCCCCEEECCS
T ss_pred             HHHHHHHHHH-HHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhc-----------------ccCCCCcEEECCC
Confidence            4    23333 4556666666666665 443333332221 000000000                 0002566666666


Q ss_pred             CcCc-ccCc---hhhcCCCCCcEEECCCCcccC-----CCcccccCCCCCCEEeCCCCcCC----ccCcccccCCCCCCe
Q 047285          418 CQIS-GHLT---NQLLQFKSLHTLELGHNSLFG-----PLPPALGELSSLKKLDLSNNMLN----GFIPLSLGKLSHLEY  484 (552)
Q Consensus       418 n~~~-~~~~---~~l~~l~~L~~L~L~~n~l~~-----~~~~~l~~l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~  484 (552)
                      |.++ +.++   ..+..+++|++|++++|+++.     ..+..+..+++|++|++++|.++    ..+|..+..+++|++
T Consensus       169 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~  248 (386)
T 2ca6_A          169 NRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE  248 (386)
T ss_dssp             SCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCE
T ss_pred             CCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCE
Confidence            6665 2222   344455666666666666552     12224555666666666666664    345555556666666


Q ss_pred             eeCCCccccee----cCHHhhhc--CCCCCEEEccCCeeeE----EcCCCC-cCcccccEEecCCCCCCCCC
Q 047285          485 LDLSNNKLNAS----LSEIHFVN--LTKLTWFSASGNSLIL----KFNPNW-VPPFQLETLQLRSCHLGPHF  545 (552)
Q Consensus       485 L~L~~n~l~~~----~~~~~~~~--l~~L~~L~L~~n~~~~----~~~~~~-~~~~~L~~L~l~~n~~~~~i  545 (552)
                      |+|++|.+++.    ++. .+..  +++|++|+|++|++.+    .+|..+ ..+++|+.|++++|++++..
T Consensus       249 L~L~~n~i~~~~~~~l~~-~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          249 LGLNDCLLSARGAAAVVD-AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             EECTTCCCCHHHHHHHHH-HHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             EECCCCCCchhhHHHHHH-HHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            66666666543    233 3322  5666666666666665    244444 33556666666666666544

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.87  E-value=3.4e-23  Score=204.10  Aligned_cols=151  Identities=19%  Similarity=0.220  Sum_probs=110.9

Q ss_pred             CCCCEEeCCCCcCCCCcchhhhcCCC--CCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCC-CccccccccCC
Q 047285          204 YMLEHLDLSQMNLSKASDWLLVTNSL--PSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNS-LFQYGSWVFGL  280 (552)
Q Consensus       204 ~~L~~L~ls~n~~~~~~~~~~~~~~~--~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~~~l  280 (552)
                      ..++.++++++.+..     ..+..+  ++++.|++++|.+.+..+. +..+++|++|++++|.+.+. ++.   .+..+
T Consensus        47 ~~~~~l~l~~~~~~~-----~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~---~~~~~  117 (336)
T 2ast_B           47 SLWQTLDLTGKNLHP-----DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHG---ILSQC  117 (336)
T ss_dssp             TTSSEEECTTCBCCH-----HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHH---HHTTB
T ss_pred             hhheeeccccccCCH-----HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHH---HHhhC
Confidence            358899999988763     233344  7899999999999888776 45789999999999998765 555   67789


Q ss_pred             CCccEEeccCccccccCchhhhcccCCcEEeccCC-CCCCC-CCccCCCCCCCCEEEccCc-cceee-cCccccCCCC-c
Q 047285          281 RNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFN-YFNST-TPGWLSKFNDLEFLSVAWN-SLQGT-ISSVGLENLT-S  355 (552)
Q Consensus       281 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n-~l~~~-~~~~l~~l~~L~~L~l~~n-~l~~~-~~~~~l~~l~-~  355 (552)
                      ++|++|++++|.+++..+..++.+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++.. +..++ +
T Consensus       118 ~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~~~l~~~  196 (336)
T 2ast_B          118 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA-VAHVSET  196 (336)
T ss_dssp             CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH-HHHSCTT
T ss_pred             CCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH-HHhcccC
Confidence            99999999999999888889999999999999999 56542 3444455556666666655 55432 2222 44445 5


Q ss_pred             cCEEeCCCC
Q 047285          356 IETLDLSGN  364 (552)
Q Consensus       356 L~~L~l~~n  364 (552)
                      |++|++++|
T Consensus       197 L~~L~l~~~  205 (336)
T 2ast_B          197 ITQLNLSGY  205 (336)
T ss_dssp             CCEEECCSC
T ss_pred             CCEEEeCCC
Confidence            555555555

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.87  E-value=3.9e-22  Score=193.97  Aligned_cols=226  Identities=19%  Similarity=0.104  Sum_probs=137.0

Q ss_pred             CCccEEeccCccccccCch---hhhcccCCcEEeccCCCCCCCCCccC--CCCCCCCEEEccCccceeecC---ccccCC
Q 047285          281 RNLVFIDLSSNQFQGQIPI---GLRNLTSLRHLDLRFNYFNSTTPGWL--SKFNDLEFLSVAWNSLQGTIS---SVGLEN  352 (552)
Q Consensus       281 ~~L~~L~L~~n~~~~~~~~---~l~~l~~L~~L~l~~n~l~~~~~~~l--~~l~~L~~L~l~~n~l~~~~~---~~~l~~  352 (552)
                      ..++.+.+.++.+......   .+..+++|++|++++|.+.+..|..+  ..+++|++|++++|.+++..+   ...+..
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            3455666666555422111   12234557777777777777666666  667777777777777765433   122445


Q ss_pred             CCccCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCccc--C--chhh
Q 047285          353 LTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGH--L--TNQL  428 (552)
Q Consensus       353 l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~--~--~~~l  428 (552)
                      +++|++|++++|. +.+..+..+..++                             +|++|++++|++.+.  +  +..+
T Consensus       144 ~~~L~~L~Ls~n~-l~~~~~~~~~~l~-----------------------------~L~~L~Ls~N~l~~~~~~~~~~~~  193 (310)
T 4glp_A          144 KPGLKVLSIAQAH-SPAFSCEQVRAFP-----------------------------ALTSLDLSDNPGLGERGLMAALCP  193 (310)
T ss_dssp             CSCCCEEEEECCS-SCCCCTTSCCCCT-----------------------------TCCEEECCSCTTCHHHHHHTTSCT
T ss_pred             ccCCCEEEeeCCC-cchhhHHHhccCC-----------------------------CCCEEECCCCCCccchhhhHHHhh
Confidence            6777777777776 6555555444443                             666777777765542  1  1223


Q ss_pred             cCCCCCcEEECCCCcccCCCcc----cccCCCCCCEEeCCCCcCCccCcccccCC---CCCCeeeCCCcccceecCHHhh
Q 047285          429 LQFKSLHTLELGHNSLFGPLPP----ALGELSSLKKLDLSNNMLNGFIPLSLGKL---SHLEYLDLSNNKLNASLSEIHF  501 (552)
Q Consensus       429 ~~l~~L~~L~L~~n~l~~~~~~----~l~~l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~  501 (552)
                      ..+++|++|++++|+++ .++.    .+..+++|++|++++|.+++..|..+..+   ++|++|++++|+++ .+|. .+
T Consensus       194 ~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~-~~  270 (310)
T 4glp_A          194 HKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPK-GL  270 (310)
T ss_dssp             TSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCS-CC
T ss_pred             hcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhh-hh
Confidence            45667777777777765 2222    23566777777777777776656555554   57777777777775 5555 23


Q ss_pred             hcCCCCCEEEccCCeeeEEcCCCCcCcccccEEecCCCCCCC
Q 047285          502 VNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLGP  543 (552)
Q Consensus       502 ~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~  543 (552)
                        .++|++|++++|++.+. | .+..+++|+.|++++|++++
T Consensus       271 --~~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          271 --PAKLRVLDLSSNRLNRA-P-QPDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             --CSCCSCEECCSCCCCSC-C-CTTSCCCCSCEECSSTTTSC
T ss_pred             --cCCCCEEECCCCcCCCC-c-hhhhCCCccEEECcCCCCCC
Confidence              26777777777777643 2 24556777777777777764

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.87  E-value=5.4e-21  Score=179.88  Aligned_cols=191  Identities=24%  Similarity=0.289  Sum_probs=128.2

Q ss_pred             CCcccCceEecCCCCcEEEEEcCCCCccCCCCchhhcccCccccCccccccCccccCCCCCCEEeCCCCcCCCCccCccc
Q 047285           68 DCCKWAGVFCSNITGHVLQLSLQNPFSYLGGDLREVKAGSNYERSKLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYL  147 (552)
Q Consensus        68 ~~c~w~gv~c~~~~~~v~~L~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~  147 (552)
                      +|+.|.|.+|..   ..+.+++++.                    .+. .+|..+.  +.+++|++++|.+.+. .+..+
T Consensus         3 ~Cp~~~gC~C~~---~~~~l~~~~~--------------------~l~-~~p~~~~--~~l~~L~L~~n~l~~~-~~~~~   55 (251)
T 3m19_A            3 TCETVTGCTCNE---GKKEVDCQGK--------------------SLD-SVPSGIP--ADTEKLDLQSTGLATL-SDATF   55 (251)
T ss_dssp             -CHHHHSSEEEG---GGTEEECTTC--------------------CCS-SCCSCCC--TTCCEEECTTSCCCCC-CTTTT
T ss_pred             cCCCCCceEcCC---CCeEEecCCC--------------------Ccc-ccCCCCC--CCCCEEEccCCCcCcc-CHhHh
Confidence            688999999953   2345777763                    333 4555444  6899999999999974 66788


Q ss_pred             CCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCCCCCCEEeCCCCcCCCCcchhhhcC
Q 047285          148 GSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTN  227 (552)
Q Consensus       148 ~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~  227 (552)
                      +.+++|++|++++|++++..|..+.++++|++|++++|.++.++...     +..+++|++|++++|.++..+  +..+.
T Consensus        56 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-----~~~l~~L~~L~L~~N~l~~~~--~~~~~  128 (251)
T 3m19_A           56 RGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGV-----FDHLTQLDKLYLGGNQLKSLP--SGVFD  128 (251)
T ss_dssp             TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTT-----TTTCTTCCEEECCSSCCCCCC--TTTTT
T ss_pred             cCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhH-----hcccCCCCEEEcCCCcCCCcC--hhHhc
Confidence            99999999999999999877778899999999999999887665332     556667777777777666531  22345


Q ss_pred             CCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCCccEEeccCccccc
Q 047285          228 SLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQG  295 (552)
Q Consensus       228 ~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~  295 (552)
                      .+++|++|++++|.+.+.++..+..+++|+.|++++|.+.+..+.   .+..+++|++|++++|.+.+
T Consensus       129 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          129 RLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG---AFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT---TTTTCTTCCEEECCSCCBCT
T ss_pred             cCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHH---HHhCCCCCCEEEeeCCceeC
Confidence            566666666666666655555555555555555555555544443   34444555555555555443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.87  E-value=4.3e-21  Score=186.13  Aligned_cols=194  Identities=24%  Similarity=0.350  Sum_probs=155.7

Q ss_pred             ccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccC
Q 047285          122 LVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLS  201 (552)
Q Consensus       122 l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~  201 (552)
                      ..++++|++|++++|.+..  +| .+..+++|++|++++|++++ ++. +.++++|++|++++|.++.++       .+.
T Consensus        37 ~~~l~~L~~L~l~~~~i~~--l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~~~-------~~~  104 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTT--IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKNVS-------AIA  104 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSCCG-------GGT
T ss_pred             HHHcCCcCEEEeeCCCccC--ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCCch-------hhc
Confidence            5678999999999999984  55 58889999999999999985 444 999999999999999887653       478


Q ss_pred             CCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCC
Q 047285          202 GLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLR  281 (552)
Q Consensus       202 ~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~  281 (552)
                      .+++|++|++++|.+...+    .+..+++|++|++++|.+.+..+  +..+++|+.|++++|.+++..     .+..++
T Consensus       105 ~l~~L~~L~l~~n~l~~~~----~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~-----~l~~l~  173 (308)
T 1h6u_A          105 GLQSIKTLDLTSTQITDVT----PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLT-----PLANLS  173 (308)
T ss_dssp             TCTTCCEEECTTSCCCCCG----GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-----GGTTCT
T ss_pred             CCCCCCEEECCCCCCCCch----hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCCh-----hhcCCC
Confidence            8999999999999988743    26788999999999998887665  777888888888888777533     256778


Q ss_pred             CccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccce
Q 047285          282 NLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQ  342 (552)
Q Consensus       282 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  342 (552)
                      +|++|++++|.+++..+  +..+++|++|++++|.+++..+  +..+++|+.|++++|.++
T Consensus       174 ~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          174 KLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             TCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEE
T ss_pred             CCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeee
Confidence            88888888888775432  6777888888888888776543  677778888888887776

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.86  E-value=1.4e-21  Score=189.62  Aligned_cols=191  Identities=25%  Similarity=0.389  Sum_probs=91.9

Q ss_pred             CCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEE
Q 047285          280 LRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETL  359 (552)
Q Consensus       280 l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L  359 (552)
                      +++|++|++++|.+.. ++ .+..+++|++|++++|.+++..+  +..+++|++|++++|.+++ ++  .+..+++|+.|
T Consensus        40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~--~~~~l~~L~~L  112 (308)
T 1h6u_A           40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS--AIAGLQSIKTL  112 (308)
T ss_dssp             HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG--GGTTCTTCCEE
T ss_pred             cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-ch--hhcCCCCCCEE
Confidence            4455555555555442 22 34555555555555555544332  4555555555555555542 22  14555555555


Q ss_pred             eCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEEC
Q 047285          360 DLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLEL  439 (552)
Q Consensus       360 ~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L  439 (552)
                      ++++|. +++ ++. +..+                             ++|++|++++|.+++..+  +..+++|+.|++
T Consensus       113 ~l~~n~-l~~-~~~-l~~l-----------------------------~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l  158 (308)
T 1h6u_A          113 DLTSTQ-ITD-VTP-LAGL-----------------------------SNLQVLYLDLNQITNISP--LAGLTNLQYLSI  158 (308)
T ss_dssp             ECTTSC-CCC-CGG-GTTC-----------------------------TTCCEEECCSSCCCCCGG--GGGCTTCCEEEC
T ss_pred             ECCCCC-CCC-chh-hcCC-----------------------------CCCCEEECCCCccCcCcc--ccCCCCccEEEc
Confidence            555554 432 111 2222                             245555555555543322  444555555555


Q ss_pred             CCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeee
Q 047285          440 GHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLI  518 (552)
Q Consensus       440 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~  518 (552)
                      ++|++++ ++. +..+++|++|++++|.+++. +. +..+++|++|++++|++++..   .+..+++|++|++++|+++
T Consensus       159 ~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~L~~N~l~~~~---~l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          159 GNAQVSD-LTP-LANLSKLTTLKADDNKISDI-SP-LASLPNLIEVHLKNNQISDVS---PLANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             CSSCCCC-CGG-GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECTTSCCCBCG---GGTTCTTCCEEEEEEEEEE
T ss_pred             cCCcCCC-Chh-hcCCCCCCEEECCCCccCcC-hh-hcCCCCCCEEEccCCccCccc---cccCCCCCCEEEccCCeee
Confidence            5555542 222 45555555555555555432 21 444555555555555553322   1445555555555555554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.86  E-value=2.7e-23  Score=208.87  Aligned_cols=245  Identities=20%  Similarity=0.226  Sum_probs=127.1

Q ss_pred             hhhhcCCCCCCCEEEcCCCCCCCCCC----CcccCCCCCceeecCCCCCCCCCccccccccCCCCccEEeccCccccccC
Q 047285          222 WLLVTNSLPSLKVLKLTKCQLCHFPP----LLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQI  297 (552)
Q Consensus       222 ~~~~~~~~~~L~~L~l~~n~~~~~~~----~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~  297 (552)
                      +...+..+++|++|++++|.+.+..+    ..+..+++|++|++++|.+.                        .+.+.+
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~------------------------~l~~~~   79 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTG------------------------RVKDEI   79 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTT------------------------SCGGGS
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccC------------------------ccccch
Confidence            44455566777777777777665432    22445555566655554222                        122222


Q ss_pred             chhh-------hcccCCcEEeccCCCCCC----CCCccCCCCCCCCEEEccCccceeecCcc---ccCCC---------C
Q 047285          298 PIGL-------RNLTSLRHLDLRFNYFNS----TTPGWLSKFNDLEFLSVAWNSLQGTISSV---GLENL---------T  354 (552)
Q Consensus       298 ~~~l-------~~l~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~---~l~~l---------~  354 (552)
                      |..+       ..+++|++|++++|.+++    .++..+..+++|++|++++|.+++..+..   .+..+         +
T Consensus        80 ~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~  159 (386)
T 2ca6_A           80 PEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAP  159 (386)
T ss_dssp             HHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             hHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCC
Confidence            2222       344555555555555544    23334444555555555555543221111   01122         6


Q ss_pred             ccCEEeCCCCCCCC-CCCch---hHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcc-----cCc
Q 047285          355 SIETLDLSGNSKLG-GKIPT---SFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISG-----HLT  425 (552)
Q Consensus       355 ~L~~L~l~~n~~l~-~~~~~---~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~-----~~~  425 (552)
                      +|+.|++++|. ++ +.++.   .+..++                             +|++|++++|.++.     ..+
T Consensus       160 ~L~~L~L~~n~-l~~~~~~~l~~~l~~~~-----------------------------~L~~L~L~~n~l~~~g~~~l~~  209 (386)
T 2ca6_A          160 PLRSIICGRNR-LENGSMKEWAKTFQSHR-----------------------------LLHTVKMVQNGIRPEGIEHLLL  209 (386)
T ss_dssp             CCCEEECCSSC-CTGGGHHHHHHHHHHCT-----------------------------TCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCcEEECCCCC-CCcHHHHHHHHHHHhCC-----------------------------CcCEEECcCCCCCHhHHHHHHH
Confidence            66777777766 44 23331   222332                             56666666666552     222


Q ss_pred             hhhcCCCCCcEEECCCCccc----CCCcccccCCCCCCEEeCCCCcCCcc----Cccccc--CCCCCCeeeCCCcccce-
Q 047285          426 NQLLQFKSLHTLELGHNSLF----GPLPPALGELSSLKKLDLSNNMLNGF----IPLSLG--KLSHLEYLDLSNNKLNA-  494 (552)
Q Consensus       426 ~~l~~l~~L~~L~L~~n~l~----~~~~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~--~l~~L~~L~L~~n~l~~-  494 (552)
                      ..+..+++|+.|+|++|.++    +.+|..+..+++|++|++++|.+++.    ++..+.  .+++|++|+|++|.+++ 
T Consensus       210 ~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~  289 (386)
T 2ca6_A          210 EGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELD  289 (386)
T ss_dssp             TTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHH
T ss_pred             HHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHH
Confidence            35556666666666666664    34555566666666666666666543    344442  26666666666666655 


Q ss_pred             ---ecCHHhhhcCCCCCEEEccCCeeeEE
Q 047285          495 ---SLSEIHFVNLTKLTWFSASGNSLILK  520 (552)
Q Consensus       495 ---~~~~~~~~~l~~L~~L~L~~n~~~~~  520 (552)
                         .+|.....++++|++|++++|++.+.
T Consensus       290 g~~~l~~~l~~~l~~L~~L~l~~N~l~~~  318 (386)
T 2ca6_A          290 AVRTLKTVIDEKMPDLLFLELNGNRFSEE  318 (386)
T ss_dssp             HHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             HHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence               35552224566666666666666543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.86  E-value=1.8e-21  Score=189.31  Aligned_cols=207  Identities=22%  Similarity=0.220  Sum_probs=121.0

Q ss_pred             CCCCCEEEcCCCCCCCCCCCcc--cCCCCCceeecCCCCCCCCCccccccccCCCCccEEeccCccccccCchhhhcccC
Q 047285          229 LPSLKVLKLTKCQLCHFPPLLS--ANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTS  306 (552)
Q Consensus       229 ~~~L~~L~l~~n~~~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~  306 (552)
                      +++|++|++++|.+.+..|..+  ..+++|++|++++|.+.+..+...                       ...+..+++
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~-----------------------~~~~~~~~~  146 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLA-----------------------ELQQWLKPG  146 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHH-----------------------HHHTTBCSC
T ss_pred             cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhH-----------------------HHHhhhccC
Confidence            3557777777777776666554  455555555555555443222100                       022335666


Q ss_pred             CcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceee--c-CccccCCCCccCEEeCCCCCCCCCCCchh----Hhhcc
Q 047285          307 LRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGT--I-SSVGLENLTSIETLDLSGNSKLGGKIPTS----FARLC  379 (552)
Q Consensus       307 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~--~-~~~~l~~l~~L~~L~l~~n~~l~~~~~~~----~~~l~  379 (552)
                      |++|++++|.+.+..+..+..+++|++|++++|++.+.  + +...+..+++|++|++++|. ++ .++..    +..+ 
T Consensus       147 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~-~l~~~~~~l~~~l-  223 (310)
T 4glp_A          147 LKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-ME-TPTGVCAALAAAG-  223 (310)
T ss_dssp             CCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CC-CHHHHHHHHHHHT-
T ss_pred             CCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CC-chHHHHHHHHhcC-
Confidence            77777777777666666666777777777777765542  1 12223566777777777776 43 22221    1222 


Q ss_pred             cCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCC---CCCcEEECCCCcccCCCcccccCCC
Q 047285          380 KLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQF---KSLHTLELGHNSLFGPLPPALGELS  456 (552)
Q Consensus       380 ~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l---~~L~~L~L~~n~l~~~~~~~l~~l~  456 (552)
                                                  ++|++|++++|.+++..|..+..+   ++|++|++++|+++ .+|..+.  +
T Consensus       224 ----------------------------~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~  272 (310)
T 4glp_A          224 ----------------------------VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--A  272 (310)
T ss_dssp             ----------------------------CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--S
T ss_pred             ----------------------------CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--C
Confidence                                        267777777777776656555554   46777777777766 5555543  5


Q ss_pred             CCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccce
Q 047285          457 SLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNA  494 (552)
Q Consensus       457 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  494 (552)
                      +|++|++++|++++. |. +..+++|+.|++++|++++
T Consensus       273 ~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          273 KLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             CCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence            667777777766642 32 4556666666666666643

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=3.8e-21  Score=179.55  Aligned_cols=196  Identities=17%  Similarity=0.170  Sum_probs=127.0

Q ss_pred             CCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCc-CCCCCccccCCCCCCCEEeccC-CCCCCCccccCCccccCCC
Q 047285          126 KHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAK-FAGMIPLQLGNLSNLQYLDLSG-TFLSNYDLHVDSLSWLSGL  203 (552)
Q Consensus       126 ~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~-~~~~lp~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~~~l~~l  203 (552)
                      ++|++|++++|.+++. .+..++.+++|++|++++|+ ++...+..+.++++|++|++++ |.++.++...     +..+
T Consensus        31 ~~l~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~-----f~~l  104 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTI-PSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA-----LKEL  104 (239)
T ss_dssp             TTCCEEEEESCCCSEE-CTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS-----EECC
T ss_pred             CcccEEEEeCCcceEE-CHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH-----hCCC
Confidence            3899999999999853 34578899999999999997 7755556788999999999998 8887665332     6677


Q ss_pred             CCCCEEeCCCCcCCCCcchhhhcCCCCCCC---EEEcCCC-CCCCCCCCcccCCCCCc-eeecCCCCCCCCCcccccccc
Q 047285          204 YMLEHLDLSQMNLSKASDWLLVTNSLPSLK---VLKLTKC-QLCHFPPLLSANFSSLK-ALHLAINNFDNSLFQYGSWVF  278 (552)
Q Consensus       204 ~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~---~L~l~~n-~~~~~~~~~~~~l~~L~-~L~l~~n~~~~~~~~~~~~~~  278 (552)
                      ++|++|++++|.+++.+.    +..+++|+   +|++++| .+.+.++..+..+++|+ .|++++|.++ .++.   ...
T Consensus       105 ~~L~~L~l~~n~l~~lp~----~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~---~~~  176 (239)
T 2xwt_C          105 PLLKFLGIFNTGLKMFPD----LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQG---YAF  176 (239)
T ss_dssp             TTCCEEEEEEECCCSCCC----CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECT---TTT
T ss_pred             CCCCEEeCCCCCCccccc----cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCH---hhc
Confidence            888888888887776432    55566666   7777777 77766666666666666 6666666655 2222   111


Q ss_pred             CCCCccEEeccCcc-ccccCchhhhcc-cCCcEEeccCCCCCCCCCccCCCCCCCCEEEccC
Q 047285          279 GLRNLVFIDLSSNQ-FQGQIPIGLRNL-TSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAW  338 (552)
Q Consensus       279 ~l~~L~~L~L~~n~-~~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~  338 (552)
                      ..++|++|++++|+ +++..+..+..+ ++|++|++++|.+++..+.   .+++|+.|++++
T Consensus       177 ~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~  235 (239)
T 2xwt_C          177 NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARN  235 (239)
T ss_dssp             TTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTT
T ss_pred             CCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccC
Confidence            22455555555553 543334445555 5555555555555432221   334444444443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.85  E-value=9.4e-21  Score=178.22  Aligned_cols=181  Identities=25%  Similarity=0.284  Sum_probs=150.1

Q ss_pred             cCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCCCCCCCCCchhHhhcccCcee
Q 047285          305 TSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSV  384 (552)
Q Consensus       305 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l  384 (552)
                      ...++++++++.++. +|..+.  ++++.|++++|.+++..+.. +..+++|++|++++|. +++..+..+..++     
T Consensus        14 ~~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~-----   83 (251)
T 3m19_A           14 EGKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDAT-FRGLTKLTWLNLDYNQ-LQTLSAGVFDDLT-----   83 (251)
T ss_dssp             GGGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTT-TTTCTTCCEEECTTSC-CCCCCTTTTTTCT-----
T ss_pred             CCCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhH-hcCcccCCEEECCCCc-CCccCHhHhccCC-----
Confidence            457789999998875 444443  68999999999998655544 8899999999999998 7766665555554     


Q ss_pred             ecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCC
Q 047285          385 DLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLS  464 (552)
Q Consensus       385 ~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  464 (552)
                                              +|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|+++
T Consensus        84 ------------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls  139 (251)
T 3m19_A           84 ------------------------ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLN  139 (251)
T ss_dssp             ------------------------TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             ------------------------cCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECc
Confidence                                    89999999999998888888899999999999999997666678889999999999


Q ss_pred             CCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEE
Q 047285          465 NNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILK  520 (552)
Q Consensus       465 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~  520 (552)
                      +|.+++..+..+..+++|++|+|++|++++..+. .+..+++|++|++++|++.+.
T Consensus       140 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          140 TNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG-AFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT-TTTTCTTCCEEECCSCCBCTT
T ss_pred             CCcCCccCHHHcCcCcCCCEEECCCCcCCccCHH-HHhCCCCCCEEEeeCCceeCC
Confidence            9999866666788999999999999999765554 788899999999999999866

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.84  E-value=5.4e-20  Score=167.80  Aligned_cols=163  Identities=24%  Similarity=0.263  Sum_probs=115.7

Q ss_pred             CCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCCC
Q 047285          125 LKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLY  204 (552)
Q Consensus       125 l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~  204 (552)
                      .++|++|++++|.+++. .+..++.+++|++|++++|++++..+..+.++++|++|++++|.++.++...     +..++
T Consensus        27 ~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-----~~~l~  100 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSL-PNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGV-----FDKLT  100 (208)
T ss_dssp             CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT-----TTTCT
T ss_pred             CCCCcEEEcCCCccCcC-ChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhH-----hcCcc
Confidence            45899999999999863 4556789999999999999998666666789999999999999887655322     56777


Q ss_pred             CCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCCcc
Q 047285          205 MLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLV  284 (552)
Q Consensus       205 ~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~  284 (552)
                      +|++|++++|.+...  .+..+..+++|++|++++|.+++.++..+..+++|+.|++++|.+.          ..+++|+
T Consensus       101 ~L~~L~L~~N~l~~~--~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~----------~~~~~l~  168 (208)
T 2o6s_A          101 QLKELALNTNQLQSL--PDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD----------CTCPGIR  168 (208)
T ss_dssp             TCCEEECCSSCCCCC--CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC----------CCTTTTH
T ss_pred             CCCEEEcCCCcCccc--CHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee----------cCCCCHH
Confidence            777777777777653  2233566777777777777777666666666666666666666433          2344566


Q ss_pred             EEeccCccccccCchhhhccc
Q 047285          285 FIDLSSNQFQGQIPIGLRNLT  305 (552)
Q Consensus       285 ~L~L~~n~~~~~~~~~l~~l~  305 (552)
                      .|+++.|.++|.+|..++.++
T Consensus       169 ~L~~~~n~~~g~ip~~~~~l~  189 (208)
T 2o6s_A          169 YLSEWINKHSGVVRNSAGSVA  189 (208)
T ss_dssp             HHHHHHHHCTTTBBCTTSSBC
T ss_pred             HHHHHHHhCCceeeccCcccc
Confidence            666666666666665555443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.83  E-value=1.2e-20  Score=176.11  Aligned_cols=196  Identities=15%  Similarity=0.185  Sum_probs=97.4

Q ss_pred             CccEEeccCccccccCchhhhcccCCcEEeccCCC-CCCCCCccCCCCCCCCEEEccC-ccceeecCccccCCCCccCEE
Q 047285          282 NLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNY-FNSTTPGWLSKFNDLEFLSVAW-NSLQGTISSVGLENLTSIETL  359 (552)
Q Consensus       282 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~l~~l~~L~~L  359 (552)
                      +|++|++++|.+++..+..+..+++|++|++++|. +++..+..+.++++|++|++++ |.++ .++...+..+++|+.|
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLKFL  110 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCCEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCCEE
Confidence            45555555555554444455555555555555554 4444444555555555555555 5555 3333225555555555


Q ss_pred             eCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCC---EEEccCC-cCcccCchhhcCCCCCc
Q 047285          360 DLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALE---SLDLSIC-QISGHLTNQLLQFKSLH  435 (552)
Q Consensus       360 ~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~---~L~ls~n-~~~~~~~~~l~~l~~L~  435 (552)
                      ++++|. +++ +|. +..++                             +|+   +|++++| .+++..+..+..+++|+
T Consensus       111 ~l~~n~-l~~-lp~-~~~l~-----------------------------~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~  158 (239)
T 2xwt_C          111 GIFNTG-LKM-FPD-LTKVY-----------------------------STDIFFILEITDNPYMTSIPVNAFQGLCNET  158 (239)
T ss_dssp             EEEEEC-CCS-CCC-CTTCC-----------------------------BCCSEEEEEEESCTTCCEECTTTTTTTBSSE
T ss_pred             eCCCCC-Ccc-ccc-ccccc-----------------------------ccccccEEECCCCcchhhcCcccccchhcce
Confidence            555554 432 332 22222                             233   5556555 55554444555555555


Q ss_pred             -EEECCCCcccCCCcccccCCCCCCEEeCCCCc-CCccCcccccCC-CCCCeeeCCCcccceecCHHhhhcCCCCCEEEc
Q 047285          436 -TLELGHNSLFGPLPPALGELSSLKKLDLSNNM-LNGFIPLSLGKL-SHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSA  512 (552)
Q Consensus       436 -~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L  512 (552)
                       .|++++|+++ .+|......++|++|++++|+ +++..+..+..+ ++|+.|++++|+++ .+|.   ..+++|+.|++
T Consensus       159 ~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~---~~~~~L~~L~l  233 (239)
T 2xwt_C          159 LTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPS---KGLEHLKELIA  233 (239)
T ss_dssp             EEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCC---TTCTTCSEEEC
T ss_pred             eEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCCh---hHhccCceeec
Confidence             5666555555 333322222455555555553 543334445555 55555555555553 2332   13445555555


Q ss_pred             cCC
Q 047285          513 SGN  515 (552)
Q Consensus       513 ~~n  515 (552)
                      +++
T Consensus       234 ~~~  236 (239)
T 2xwt_C          234 RNT  236 (239)
T ss_dssp             TTC
T ss_pred             cCc
Confidence            443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.82  E-value=8.7e-20  Score=166.42  Aligned_cols=193  Identities=21%  Similarity=0.212  Sum_probs=109.8

Q ss_pred             cEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCCCCCCCCCchhHhhcccCceeecc
Q 047285          308 RHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLS  387 (552)
Q Consensus       308 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~  387 (552)
                      +.++.+++.++.. |..+  .++|++|++++|.++ .++...+..+++|++|++++|. +++..+..+..++        
T Consensus        10 ~~v~c~~~~l~~~-p~~~--~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~--------   76 (208)
T 2o6s_A           10 TTVECYSQGRTSV-PTGI--PAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLT--------   76 (208)
T ss_dssp             TEEECCSSCCSSC-CSCC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCT--------
T ss_pred             CEEEecCCCccCC-CCCC--CCCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCc-cCccChhhcCCCC--------
Confidence            4566666665543 2222  346677777777666 3333335666667777776665 5433333333332        


Q ss_pred             cccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCc
Q 047285          388 LIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNM  467 (552)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  467 (552)
                                           +|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.
T Consensus        77 ---------------------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  135 (208)
T 2o6s_A           77 ---------------------SLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ  135 (208)
T ss_dssp             ---------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ---------------------CcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc
Confidence                                 56666666666665555555666666666666666665444455666666666666666


Q ss_pred             CCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcccccEEecCCCCCCCCCC
Q 047285          468 LNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLGPHFP  546 (552)
Q Consensus       468 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~iP  546 (552)
                      +++..+..+..+++|++|++++|++.+        .+++|++|+++.|+++|.+|..+..+..    +...|...|..+
T Consensus       136 l~~~~~~~~~~l~~L~~L~l~~N~~~~--------~~~~l~~L~~~~n~~~g~ip~~~~~l~~----~~~~C~~~~~~~  202 (208)
T 2o6s_A          136 LKSVPDGVFDRLTSLQYIWLHDNPWDC--------TCPGIRYLSEWINKHSGVVRNSAGSVAP----DSAKCSGSGKPV  202 (208)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSCCBCC--------CTTTTHHHHHHHHHCTTTBBCTTSSBCT----TCSBBTTTCCBG
T ss_pred             cceeCHHHhccCCCccEEEecCCCeec--------CCCCHHHHHHHHHhCCceeeccCccccC----CccccccCCCcc
Confidence            664444445666666666666665543        2345556666666666666655554433    444454444433

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.81  E-value=1.3e-19  Score=188.61  Aligned_cols=212  Identities=21%  Similarity=0.266  Sum_probs=156.4

Q ss_pred             CCCCCCCCCCc-----ccCce-EecCCCCcEEEEEcCCCCccCCCCchhhcccCccccCccccccCccccCCCCCCEEeC
Q 047285           60 ASWNTGDGDCC-----KWAGV-FCSNITGHVLQLSLQNPFSYLGGDLREVKAGSNYERSKLGGKVNPSLVDLKHLIHLDL  133 (552)
Q Consensus        60 ~~W~~~~~~~c-----~w~gv-~c~~~~~~v~~L~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L  133 (552)
                      .+|.. +.++|     .|.|+ .|.  .++++.|++++.                    .+.+ +|..+  +++|++|++
T Consensus        34 ~~W~~-~~~~~~~~~~~~~~l~~C~--~~~L~~L~Ls~n--------------------~L~~-lp~~l--~~~L~~L~L   87 (571)
T 3cvr_A           34 DKWEK-QALPGENRNEAVSLLKECL--INQFSELQLNRL--------------------NLSS-LPDNL--PPQITVLEI   87 (571)
T ss_dssp             HHHHT-TCCTTCCHHHHHHHHHHHH--HTTCSEEECCSS--------------------CCSC-CCSCC--CTTCSEEEC
T ss_pred             HHHhc-cCCccccccchhhhccccc--cCCccEEEeCCC--------------------CCCc-cCHhH--cCCCCEEEC
Confidence            34654 34556     79999 786  357999999883                    6665 67666  388999999


Q ss_pred             CCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCCCCCCEEeCCC
Q 047285          134 SGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQ  213 (552)
Q Consensus       134 s~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~ls~  213 (552)
                      ++|.++  .+|   +.+++|++|++++|++++ +|. +.+  +|++|++++|.++.+|.         .+++|+.|++++
T Consensus        88 s~N~l~--~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~lp~---------~l~~L~~L~Ls~  149 (571)
T 3cvr_A           88 TQNALI--SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTMLPE---------LPALLEYINADN  149 (571)
T ss_dssp             CSSCCS--CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSCCCC---------CCTTCCEEECCS
T ss_pred             cCCCCc--ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCCCCC---------cCccccEEeCCC
Confidence            999999  477   557999999999999996 777 665  99999999998887552         578899999999


Q ss_pred             CcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccc-cCCCCccEEeccCcc
Q 047285          214 MNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWV-FGLRNLVFIDLSSNQ  292 (552)
Q Consensus       214 n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~~l~~L~~L~L~~n~  292 (552)
                      |.+++.+.      .+++|++|++++|.+++.++  +.  ++|+.|++++|.++. +|.+...+ ...+.|+.|++++|.
T Consensus       150 N~l~~lp~------~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~-lp~~~~~L~~~~~~L~~L~Ls~N~  218 (571)
T 3cvr_A          150 NQLTMLPE------LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLES-LPAVPVRNHHSEETEIFFRCRENR  218 (571)
T ss_dssp             SCCSCCCC------CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSS-CCCCC--------CCEEEECCSSC
T ss_pred             CccCcCCC------cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCc-hhhHHHhhhcccccceEEecCCCc
Confidence            99887543      56889999999999888554  44  788888888888873 33321100 011222888888888


Q ss_pred             ccccCchhhhcccCCcEEeccCCCCCCCCCccCCC
Q 047285          293 FQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSK  327 (552)
Q Consensus       293 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~  327 (552)
                      ++ .+|..+..+++|+.|++++|.+++.+|..+..
T Consensus       219 l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~  252 (571)
T 3cvr_A          219 IT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ  252 (571)
T ss_dssp             CC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred             ce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence            77 56777777888888888888887766655543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.80  E-value=3.3e-19  Score=185.51  Aligned_cols=186  Identities=23%  Similarity=0.311  Sum_probs=133.7

Q ss_pred             CccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeC
Q 047285          282 NLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDL  361 (552)
Q Consensus       282 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l  361 (552)
                      +++.|++++|.+++ +|..+  .++|++|++++|.++ .+|   ..+++|++|++++|.+++ +|.  +..  +|+.|++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~--l~~--~L~~L~L  127 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE--LPA--SLKHLDV  127 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC--CCT--TCCEEEC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch--hhc--CCCEEEC
Confidence            77888888887775 55544  367888888888777 344   346778888888887775 555  333  7788888


Q ss_pred             CCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCC
Q 047285          362 SGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGH  441 (552)
Q Consensus       362 ~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~  441 (552)
                      ++|. +++ +|.   .+                             ++|++|++++|.+++ +|.   .+++|+.|++++
T Consensus       128 s~N~-l~~-lp~---~l-----------------------------~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~  169 (571)
T 3cvr_A          128 DNNQ-LTM-LPE---LP-----------------------------ALLEYINADNNQLTM-LPE---LPTSLEVLSVRN  169 (571)
T ss_dssp             CSSC-CSC-CCC---CC-----------------------------TTCCEEECCSSCCSC-CCC---CCTTCCEEECCS
T ss_pred             CCCc-CCC-CCC---cC-----------------------------ccccEEeCCCCccCc-CCC---cCCCcCEEECCC
Confidence            8876 554 333   12                             378888888888886 444   567888888888


Q ss_pred             CcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCC-------CeeeCCCcccceecCHHhhhcCCCCCEEEccC
Q 047285          442 NSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHL-------EYLDLSNNKLNASLSEIHFVNLTKLTWFSASG  514 (552)
Q Consensus       442 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-------~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~  514 (552)
                      |++++ +|. +.  ++|+.|++++|.++ .+|. +..  +|       +.|++++|+++ .+|. .+..+++|+.|+|++
T Consensus       170 N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~-~l~~l~~L~~L~L~~  239 (571)
T 3cvr_A          170 NQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPE-NILSLDPTCTIILED  239 (571)
T ss_dssp             SCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCG-GGGGSCTTEEEECCS
T ss_pred             CCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCH-HHhcCCCCCEEEeeC
Confidence            88885 666 55  78888888888888 6666 543  66       88888888885 5777 566688888888888


Q ss_pred             CeeeEEcCCCCcC
Q 047285          515 NSLILKFNPNWVP  527 (552)
Q Consensus       515 n~~~~~~~~~~~~  527 (552)
                      |++++..|..+..
T Consensus       240 N~l~~~~p~~l~~  252 (571)
T 3cvr_A          240 NPLSSRIRESLSQ  252 (571)
T ss_dssp             SSCCHHHHHHHHH
T ss_pred             CcCCCcCHHHHHH
Confidence            8888777765544

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.79  E-value=2.5e-18  Score=158.96  Aligned_cols=164  Identities=23%  Similarity=0.203  Sum_probs=122.9

Q ss_pred             CCCCCCCCCcccCceEecCCCCcEEEEEcCCCCccCCCCchhhcccCccccCccccccCccccCCCCCCEEeCCCCcCCC
Q 047285           61 SWNTGDGDCCKWAGVFCSNITGHVLQLSLQNPFSYLGGDLREVKAGSNYERSKLGGKVNPSLVDLKHLIHLDLSGNDFEG  140 (552)
Q Consensus        61 ~W~~~~~~~c~w~gv~c~~~~~~v~~L~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~  140 (552)
                      .|.. +...|.|.+|.|..  .                               -.+.+|..+.  ++|++|++++|.+++
T Consensus        11 ~~~~-~~~~Cs~~~v~c~~--~-------------------------------~l~~ip~~~~--~~L~~L~Ls~n~i~~   54 (229)
T 3e6j_A           11 AACP-SQCSCSGTTVDCRS--K-------------------------------RHASVPAGIP--TNAQILYLHDNQITK   54 (229)
T ss_dssp             CCCC-TTCEEETTEEECTT--S-------------------------------CCSSCCSCCC--TTCSEEECCSSCCCC
T ss_pred             ccCC-CCCEEeCCEeEccC--C-------------------------------CcCccCCCCC--CCCCEEEcCCCccCc
Confidence            3444 56889999999963  1                               1223444333  889999999999997


Q ss_pred             CccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCCCCCCEEeCCCCcCCCCc
Q 047285          141 IQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKAS  220 (552)
Q Consensus       141 ~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~  220 (552)
                      . .|..+..+++|++|+|++|++....+..+.++++|++|++++|.++.++...     +..+++|++|++++|.+..  
T Consensus        55 ~-~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~-----~~~l~~L~~L~Ls~N~l~~--  126 (229)
T 3e6j_A           55 L-EPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAV-----FDRLVHLKELFMCCNKLTE--  126 (229)
T ss_dssp             C-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT-----TTTCTTCCEEECCSSCCCS--
T ss_pred             c-CHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhH-----hCcchhhCeEeccCCcccc--
Confidence            4 6888999999999999999998655566789999999999999888765432     5678888888888888775  


Q ss_pred             chhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCC
Q 047285          221 DWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNS  269 (552)
Q Consensus       221 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  269 (552)
                       ++..+..+++|++|++++|.+.+.++..+..+++|+.|++++|.+...
T Consensus       127 -lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A          127 -LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             -CCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred             -cCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence             345556777778888877777777666666666666666666665543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.79  E-value=2.1e-18  Score=170.45  Aligned_cols=132  Identities=16%  Similarity=0.064  Sum_probs=58.2

Q ss_pred             CCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCCccE-EeccCccccccCchhhhcccCCcE
Q 047285          231 SLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVF-IDLSSNQFQGQIPIGLRNLTSLRH  309 (552)
Q Consensus       231 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~-L~L~~n~~~~~~~~~l~~l~~L~~  309 (552)
                      ++++|++++|+++..++..|.++++|++|++++|.+.+.++..  .+.+++++++ +.++.|+++...|..|..+++|++
T Consensus        31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~--~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~  108 (350)
T 4ay9_X           31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEAD--VFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY  108 (350)
T ss_dssp             TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTT--SBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred             CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChh--HhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence            3444444444444444444444444444444444443333221  2334444433 333344444444444555555555


Q ss_pred             EeccCCCCCCCCCccCCCCCCCCEEEccCc-cceeecCccccCCCC-ccCEEeCCCCC
Q 047285          310 LDLRFNYFNSTTPGWLSKFNDLEFLSVAWN-SLQGTISSVGLENLT-SIETLDLSGNS  365 (552)
Q Consensus       310 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n-~l~~~~~~~~l~~l~-~L~~L~l~~n~  365 (552)
                      |++++|.++...+..+....++..+++.++ .+. .++...+..+. .++.|++++|.
T Consensus       109 L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~-~l~~~~f~~~~~~l~~L~L~~N~  165 (350)
T 4ay9_X          109 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-TIERNSFVGLSFESVILWLNKNG  165 (350)
T ss_dssp             EEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC-EECTTSSTTSBSSCEEEECCSSC
T ss_pred             ccccccccccCCchhhcccchhhhhhhccccccc-cccccchhhcchhhhhhcccccc
Confidence            555555555444444444444455555432 222 33333233332 34555555554

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.77  E-value=9.8e-19  Score=172.88  Aligned_cols=241  Identities=16%  Similarity=0.096  Sum_probs=161.8

Q ss_pred             ceeecCCCCCCCCCccccccccCCCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCC-ccCCCCCCCCE-E
Q 047285          257 KALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTP-GWLSKFNDLEF-L  334 (552)
Q Consensus       257 ~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~-L  334 (552)
                      +.++.++++++.. |.   .+  .+++++|+|++|+++...+..|..+++|++|++++|.+.+.++ ..|.+++++++ +
T Consensus        12 ~~v~C~~~~Lt~i-P~---~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l   85 (350)
T 4ay9_X           12 RVFLCQESKVTEI-PS---DL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR   85 (350)
T ss_dssp             TEEEEESTTCCSC-CT---TC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEE
T ss_pred             CEEEecCCCCCcc-Cc---Cc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhh
Confidence            4455666665532 32   22  3567777777777774444567777777777777777665443 45666766664 4


Q ss_pred             EccCccceeecCccccCCCCccCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEE
Q 047285          335 SVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLD  414 (552)
Q Consensus       335 ~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~  414 (552)
                      .+..|+++ .++...+..+++|+.|++++|. +....+..+.                             ....+..++
T Consensus        86 ~~~~N~l~-~l~~~~f~~l~~L~~L~l~~n~-l~~~~~~~~~-----------------------------~~~~l~~l~  134 (350)
T 4ay9_X           86 IEKANNLL-YINPEAFQNLPNLQYLLISNTG-IKHLPDVHKI-----------------------------HSLQKVLLD  134 (350)
T ss_dssp             EEEETTCC-EECTTSBCCCTTCCEEEEEEEC-CSSCCCCTTC-----------------------------CBSSCEEEE
T ss_pred             cccCCccc-ccCchhhhhccccccccccccc-cccCCchhhc-----------------------------ccchhhhhh
Confidence            44556666 3433337777777777777776 5433322222                             223677788


Q ss_pred             ccC-CcCcccCchhhcCCC-CCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcc-cccCCCCCCeeeCCCcc
Q 047285          415 LSI-CQISGHLTNQLLQFK-SLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPL-SLGKLSHLEYLDLSNNK  491 (552)
Q Consensus       415 ls~-n~~~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~  491 (552)
                      +.+ +.+....+..+..+. .++.|++++|+++ .++......++|+++++++|+..+.+|. .|..+++|++|++++|+
T Consensus       135 l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~  213 (350)
T 4ay9_X          135 IQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR  213 (350)
T ss_dssp             EESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC
T ss_pred             hccccccccccccchhhcchhhhhhcccccccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC
Confidence            865 466655555666654 6899999999998 5555555678899999987554446664 57899999999999999


Q ss_pred             cceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcccccEEecCCCC
Q 047285          492 LNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCH  540 (552)
Q Consensus       492 l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~  540 (552)
                      ++ .+|.   ..+.+|+.|.+.++.-...+| .+..+.+|+.+++.++.
T Consensus       214 l~-~lp~---~~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~  257 (350)
T 4ay9_X          214 IH-SLPS---YGLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYPS  257 (350)
T ss_dssp             CC-CCCS---SSCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCHH
T ss_pred             cC-ccCh---hhhccchHhhhccCCCcCcCC-CchhCcChhhCcCCCCc
Confidence            95 5664   345677778777776566676 57788899999997653

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.76  E-value=7.1e-18  Score=161.94  Aligned_cols=173  Identities=25%  Similarity=0.307  Sum_probs=118.1

Q ss_pred             ccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccC
Q 047285          122 LVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLS  201 (552)
Q Consensus       122 l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~  201 (552)
                      +.++++|++|++++|.+..  ++ .++.+++|++|++++|++++..+  +.++++|++|++++|.++.++       .+.
T Consensus        42 ~~~l~~L~~L~l~~~~i~~--~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~-------~l~  109 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLS-------SLK  109 (291)
T ss_dssp             HHHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGG-------GGT
T ss_pred             hhhcCcccEEEccCCCccc--Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCCh-------hhc
Confidence            4567888888888888874  44 37778888888888888875433  888888888888888766532       366


Q ss_pred             CCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCC
Q 047285          202 GLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLR  281 (552)
Q Consensus       202 ~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~  281 (552)
                      .+++|++|++++|.+...    ..+..+++|++|++++|.+.+.  .                           .+..++
T Consensus       110 ~l~~L~~L~L~~n~i~~~----~~l~~l~~L~~L~l~~n~l~~~--~---------------------------~l~~l~  156 (291)
T 1h6t_A          110 DLKKLKSLSLEHNGISDI----NGLVHLPQLESLYLGNNKITDI--T---------------------------VLSRLT  156 (291)
T ss_dssp             TCTTCCEEECTTSCCCCC----GGGGGCTTCCEEECCSSCCCCC--G---------------------------GGGGCT
T ss_pred             cCCCCCEEECCCCcCCCC----hhhcCCCCCCEEEccCCcCCcc--h---------------------------hhccCC
Confidence            666777777777766653    2234455555555555554432  1                           455667


Q ss_pred             CccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCcccee
Q 047285          282 NLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQG  343 (552)
Q Consensus       282 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  343 (552)
                      +|++|++++|.+++..+  +..+++|++|++++|.+++. + .+..+++|+.|++++|.++.
T Consensus       157 ~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          157 KLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             TCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred             CCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence            77777777777765433  67777777777777777653 2 36777788888888887763

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.76  E-value=3.4e-18  Score=164.21  Aligned_cols=171  Identities=26%  Similarity=0.373  Sum_probs=97.5

Q ss_pred             cCCCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccC
Q 047285          278 FGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIE  357 (552)
Q Consensus       278 ~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~  357 (552)
                      ..+++|+.|++++|.+.. ++ .+..+++|++|++++|.+++..+  +..+++|++|++++|.+++ ++.  +..+++|+
T Consensus        43 ~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~--l~~l~~L~  115 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LSS--LKDLKKLK  115 (291)
T ss_dssp             HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GGG--GTTCTTCC
T ss_pred             hhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Chh--hccCCCCC
Confidence            345666666666666653 22 35666666666666666665433  5666666666666666653 222  55666666


Q ss_pred             EEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEE
Q 047285          358 TLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTL  437 (552)
Q Consensus       358 ~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L  437 (552)
                      .|++++|. +++.  ..+..                             +++|++|++++|.+++.  ..+..+++|+.|
T Consensus       116 ~L~L~~n~-i~~~--~~l~~-----------------------------l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L  161 (291)
T 1h6t_A          116 SLSLEHNG-ISDI--NGLVH-----------------------------LPQLESLYLGNNKITDI--TVLSRLTKLDTL  161 (291)
T ss_dssp             EEECTTSC-CCCC--GGGGG-----------------------------CTTCCEEECCSSCCCCC--GGGGGCTTCSEE
T ss_pred             EEECCCCc-CCCC--hhhcC-----------------------------CCCCCEEEccCCcCCcc--hhhccCCCCCEE
Confidence            66666665 4321  12222                             22566666666666543  345566666666


Q ss_pred             ECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccc
Q 047285          438 ELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLN  493 (552)
Q Consensus       438 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  493 (552)
                      ++++|++++..+  +..+++|++|++++|.+++ ++. +..+++|+.|++++|+++
T Consensus       162 ~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~~-l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          162 SLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LRA-LAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             ECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CGG-GTTCTTCSEEEEEEEEEE
T ss_pred             EccCCccccchh--hcCCCccCEEECCCCcCCC-Chh-hccCCCCCEEECcCCccc
Confidence            666666654322  5566666666666666653 332 555666666666666654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=1.6e-17  Score=174.82  Aligned_cols=175  Identities=24%  Similarity=0.292  Sum_probs=132.2

Q ss_pred             ccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccC
Q 047285          122 LVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLS  201 (552)
Q Consensus       122 l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~  201 (552)
                      +..+++|++|++++|.+..  ++ .++.+++|++|+|++|++.+..|  +.++++|++|+|++|.+..++       .+.
T Consensus        39 ~~~L~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-------~l~  106 (605)
T 1m9s_A           39 QNELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS-------SLK  106 (605)
T ss_dssp             HHHHTTCCCCBCTTCCCCC--CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT-------TST
T ss_pred             hhcCCCCCEEECcCCCCCC--Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh-------hhc
Confidence            5678888888998888874  44 47888899999999888886444  888888999999888876643       377


Q ss_pred             CCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCC
Q 047285          202 GLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLR  281 (552)
Q Consensus       202 ~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~  281 (552)
                      .+++|+.|++++|.+...    ..+..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.+.+..+     +..++
T Consensus       107 ~l~~L~~L~Ls~N~l~~l----~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-----l~~l~  175 (605)
T 1m9s_A          107 DLKKLKSLSLEHNGISDI----NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-----LAGLT  175 (605)
T ss_dssp             TCTTCCEEECTTSCCCCC----GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-----GTTCT
T ss_pred             cCCCCCEEEecCCCCCCC----ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-----hccCC
Confidence            888888888888888764    2356778888888888888765  456777788888888777776543     55677


Q ss_pred             CccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCC
Q 047285          282 NLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTT  321 (552)
Q Consensus       282 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~  321 (552)
                      +|+.|+|++|.+.+. + .+..+++|+.|++++|.+.+..
T Consensus       176 ~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l~~~p  213 (605)
T 1m9s_A          176 KLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNKP  213 (605)
T ss_dssp             TCCEEECCSSCCCBC-G-GGTTCTTCSEEECCSEEEECCC
T ss_pred             CCCEEECcCCCCCCC-h-HHccCCCCCEEEccCCcCcCCc
Confidence            788888888777653 3 4777777888888777776543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.74  E-value=2.5e-17  Score=151.24  Aligned_cols=156  Identities=19%  Similarity=0.201  Sum_probs=108.7

Q ss_pred             EEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCCCCCCCCCchhHhhcccCceeeccc
Q 047285          309 HLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSL  388 (552)
Q Consensus       309 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~  388 (552)
                      .+++++|.++. +|..+.  +.+++|++++|.+++..+...+..+++|+.|++++|. +++..+..|..++         
T Consensus        15 ~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~---------   81 (220)
T 2v70_A           15 TVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGAS---------   81 (220)
T ss_dssp             EEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCT---------
T ss_pred             EeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCC---------
Confidence            55555555543 233222  3456666666666654444446667777777777776 5544444444443         


Q ss_pred             ccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcC
Q 047285          389 IDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNML  468 (552)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  468 (552)
                                          +|++|++++|.+++..+..+..+++|++|++++|++++..|..+..+++|++|++++|.+
T Consensus        82 --------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l  141 (220)
T 2v70_A           82 --------------------GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQI  141 (220)
T ss_dssp             --------------------TCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCC
T ss_pred             --------------------CCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcC
Confidence                                677778888887777777777888888888888888877777788888888888888888


Q ss_pred             CccCcccccCCCCCCeeeCCCcccceecC
Q 047285          469 NGFIPLSLGKLSHLEYLDLSNNKLNASLS  497 (552)
Q Consensus       469 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  497 (552)
                      ++..|..+..+++|++|++++|++.+..+
T Consensus       142 ~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          142 TTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             CCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             CEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            87777788888888888888888876554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.74  E-value=2e-17  Score=151.85  Aligned_cols=156  Identities=19%  Similarity=0.161  Sum_probs=129.1

Q ss_pred             CEEEccCccceeecCccccCCCCccCEEeCCCCCCCCCCCc-hhHhhcccCceeecccccCCCCCccccccccccCCCCC
Q 047285          332 EFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIP-TSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYAL  410 (552)
Q Consensus       332 ~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L  410 (552)
                      +.+++++|.++ .+|.. +  .+.++.|++++|. +++..+ ..|..+                             ++|
T Consensus        14 ~~l~~s~n~l~-~iP~~-~--~~~~~~L~L~~N~-l~~~~~~~~~~~l-----------------------------~~L   59 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEH-I--PQYTAELRLNNNE-FTVLEATGIFKKL-----------------------------PQL   59 (220)
T ss_dssp             TEEECCSSCCS-SCCSC-C--CTTCSEEECCSSC-CCEECCCCCGGGC-----------------------------TTC
T ss_pred             CEeEeCCCCcc-cCccC-C--CCCCCEEEcCCCc-CCccCchhhhccC-----------------------------CCC
Confidence            57888888887 56654 3  3456889999987 665433 223443                             389


Q ss_pred             CEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCc
Q 047285          411 ESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNN  490 (552)
Q Consensus       411 ~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  490 (552)
                      ++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|.+++..|..+..+++|++|+|++|
T Consensus        60 ~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N  139 (220)
T 2v70_A           60 RKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN  139 (220)
T ss_dssp             CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS
T ss_pred             CEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC
Confidence            99999999999888888999999999999999999877788999999999999999999888888999999999999999


Q ss_pred             ccceecCHHhhhcCCCCCEEEccCCeeeEEcC
Q 047285          491 KLNASLSEIHFVNLTKLTWFSASGNSLILKFN  522 (552)
Q Consensus       491 ~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~  522 (552)
                      ++++..|. .+..+++|++|++++|++.+.++
T Consensus       140 ~l~~~~~~-~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          140 QITTVAPG-AFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             CCCCBCTT-TTTTCTTCCEEECCSCCEECSGG
T ss_pred             cCCEECHH-HhcCCCCCCEEEecCcCCcCCCc
Confidence            99877676 78899999999999999987665

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=9.6e-18  Score=176.44  Aligned_cols=191  Identities=24%  Similarity=0.344  Sum_probs=120.8

Q ss_pred             CCCceeecCCCCCCCCCccccccccCCCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCE
Q 047285          254 SSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEF  333 (552)
Q Consensus       254 ~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  333 (552)
                      ..+..+.+..+.+.+..     .+..+++|+.|++++|.+.. ++ .+..+++|+.|++++|.+.+..+  +..+++|+.
T Consensus        21 ~~l~~l~l~~~~i~~~~-----~~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~   91 (605)
T 1m9s_A           21 AETIKDNLKKKSVTDAV-----TQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGW   91 (605)
T ss_dssp             HHHHHHHTTCSCTTSEE-----CHHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCE
T ss_pred             HHHHHHhccCCCccccc-----chhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCE
Confidence            34445555555554433     23456777777777777763 33 46777777777777777766544  667777777


Q ss_pred             EEccCccceeecCccccCCCCccCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEE
Q 047285          334 LSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESL  413 (552)
Q Consensus       334 L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L  413 (552)
                      |++++|.+.+ ++  .+..+++|+.|++++|. +.+ + +.+..                             +++|+.|
T Consensus        92 L~Ls~N~l~~-l~--~l~~l~~L~~L~Ls~N~-l~~-l-~~l~~-----------------------------l~~L~~L  136 (605)
T 1m9s_A           92 LFLDENKIKD-LS--SLKDLKKLKSLSLEHNG-ISD-I-NGLVH-----------------------------LPQLESL  136 (605)
T ss_dssp             EECCSSCCCC-CT--TSTTCTTCCEEECTTSC-CCC-C-GGGGG-----------------------------CTTCSEE
T ss_pred             EECcCCCCCC-Ch--hhccCCCCCEEEecCCC-CCC-C-ccccC-----------------------------CCccCEE
Confidence            7777777763 33  26667777777777776 443 1 12222                             2367777


Q ss_pred             EccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccc
Q 047285          414 DLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLN  493 (552)
Q Consensus       414 ~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  493 (552)
                      +|++|.+++.  ..+..+++|+.|+|++|++.+..|  +..+++|+.|+|++|.+++ ++ .+..+++|+.|+|++|+++
T Consensus       137 ~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~l~  210 (605)
T 1m9s_A          137 YLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECL  210 (605)
T ss_dssp             ECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEECCSEEEE
T ss_pred             ECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEccCCcCc
Confidence            7777777654  456667777777777777765444  6667777777777777764 33 4666777777777777765


Q ss_pred             e
Q 047285          494 A  494 (552)
Q Consensus       494 ~  494 (552)
                      +
T Consensus       211 ~  211 (605)
T 1m9s_A          211 N  211 (605)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.73  E-value=2.3e-17  Score=151.38  Aligned_cols=155  Identities=21%  Similarity=0.236  Sum_probs=123.6

Q ss_pred             cEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCCCCCCCCCchhHhhcccCceeecc
Q 047285          308 RHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLS  387 (552)
Q Consensus       308 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~  387 (552)
                      +.++++++.++.. |..+.  ++|+.|++++|.+++ ++...+..+++|+.|++++|. +++..|..|..++        
T Consensus        14 ~~v~c~~~~l~~i-P~~l~--~~l~~L~l~~n~i~~-i~~~~~~~l~~L~~L~Ls~N~-i~~~~~~~~~~l~--------   80 (220)
T 2v9t_B           14 NIVDCRGKGLTEI-PTNLP--ETITEIRLEQNTIKV-IPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLR--------   80 (220)
T ss_dssp             TEEECTTSCCSSC-CSSCC--TTCCEEECCSSCCCE-ECTTSSTTCTTCCEEECCSSC-CCEECTTTTTTCS--------
T ss_pred             CEEEcCCCCcCcC-CCccC--cCCCEEECCCCcCCC-cCHhHhhCCCCCCEEECCCCc-CCCcCHHHhhCCc--------
Confidence            5788888887754 44333  688999999999884 444448888999999999997 7766666665555        


Q ss_pred             cccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCc
Q 047285          388 LIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNM  467 (552)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  467 (552)
                                           +|++|++++|.++...+..|..+++|+.|+|++|++++..|..|..+++|++|++++|.
T Consensus        81 ---------------------~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  139 (220)
T 2v9t_B           81 ---------------------SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK  139 (220)
T ss_dssp             ---------------------SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ---------------------CCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc
Confidence                                 78889999999887666677888999999999999988778888888999999999999


Q ss_pred             CCccCcccccCCCCCCeeeCCCcccceec
Q 047285          468 LNGFIPLSLGKLSHLEYLDLSNNKLNASL  496 (552)
Q Consensus       468 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  496 (552)
                      +++..+..+..+++|++|++++|++....
T Consensus       140 l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  168 (220)
T 2v9t_B          140 LQTIAKGTFSPLRAIQTMHLAQNPFICDC  168 (220)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred             CCEECHHHHhCCCCCCEEEeCCCCcCCCC
Confidence            88766777888889999999998886543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.72  E-value=4.2e-17  Score=161.77  Aligned_cols=178  Identities=29%  Similarity=0.288  Sum_probs=136.2

Q ss_pred             cEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCC-CCCCCCEEEccCccceeecCccccCCCCccCEEeCC
Q 047285          284 VFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLS-KFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLS  362 (552)
Q Consensus       284 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~  362 (552)
                      +.++++++.++ .+|..+.  +.++.|++++|.+++..+..+. ++++|++|++++|++++ ++...+..+++|+.|+++
T Consensus        21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~-i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF-ISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCc-cChhhccCCCCCCEEECC
Confidence            57888888887 4665543  5688999999999888777777 88999999999998884 443348888899999999


Q ss_pred             CCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCC
Q 047285          363 GNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHN  442 (552)
Q Consensus       363 ~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n  442 (552)
                      +|. +++..+..|..++                             +|++|++++|.+++..+..|..+++|+.|+|++|
T Consensus        97 ~N~-l~~~~~~~~~~l~-----------------------------~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N  146 (361)
T 2xot_A           97 SNH-LHTLDEFLFSDLQ-----------------------------ALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN  146 (361)
T ss_dssp             SSC-CCEECTTTTTTCT-----------------------------TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CCc-CCcCCHHHhCCCc-----------------------------CCCEEECCCCcccEECHHHhCCcccCCEEECCCC
Confidence            987 6654444444443                             7888999999988888888888899999999999


Q ss_pred             cccCCCcccc---cCCCCCCEEeCCCCcCCccCcccccCCCC--CCeeeCCCccccee
Q 047285          443 SLFGPLPPAL---GELSSLKKLDLSNNMLNGFIPLSLGKLSH--LEYLDLSNNKLNAS  495 (552)
Q Consensus       443 ~l~~~~~~~l---~~l~~L~~L~L~~n~l~~~~~~~~~~l~~--L~~L~L~~n~l~~~  495 (552)
                      ++++..+..+   ..+++|+.|+|++|.+++..+..+..++.  ++.|+|++|++...
T Consensus       147 ~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~  204 (361)
T 2xot_A          147 QISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECD  204 (361)
T ss_dssp             CCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred             cCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCC
Confidence            8885433444   56888999999999888555556677776  47888988888654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.72  E-value=9.8e-17  Score=148.25  Aligned_cols=137  Identities=24%  Similarity=0.161  Sum_probs=119.1

Q ss_pred             CCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeC
Q 047285          408 YALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDL  487 (552)
Q Consensus       408 ~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  487 (552)
                      ++|++|++++|.+++..+..+..+++|+.|+|++|++.+..+..|..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L  119 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM  119 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence            37999999999999888888999999999999999998655567789999999999999998766667888999999999


Q ss_pred             CCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcccccEEecCCCCCCCCCC
Q 047285          488 SNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLGPHFP  546 (552)
Q Consensus       488 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~iP  546 (552)
                      ++|+++ .+|. .+..+++|++|++++|++.+..+..+..+.+|+.|++++|++.+..+
T Consensus       120 s~N~l~-~lp~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          120 CCNKLT-ELPR-GIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             CSSCCC-SCCT-TGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             cCCccc-ccCc-ccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            999996 6777 68899999999999999986666678888999999999999987654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.72  E-value=1e-18  Score=188.56  Aligned_cols=54  Identities=15%  Similarity=0.149  Sum_probs=13.0

Q ss_pred             CcHHHHHHHHHhHhcCCCC-CCCCCCCCCCCCCCcccCceEecCCCCcEEEEEcCCC
Q 047285           37 CIDSEREALLKLKQDLIDP-SNRLASWNTGDGDCCKWAGVFCSNITGHVLQLSLQNP   92 (552)
Q Consensus        37 ~~~~~~~~l~~~~~~~~~~-~~~~~~W~~~~~~~c~w~gv~c~~~~~~v~~L~l~~~   92 (552)
                      ..+.+++++.++..+...+ +..-..|.......+.|.++.++  ..+++++++.+.
T Consensus       129 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--~~~~~~l~L~~n  183 (727)
T 4b8c_D          129 LVDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVS--TPLTPKIELFAN  183 (727)
T ss_dssp             ---CCCHHHHHHHHHHHHHHTTC----------------------------------
T ss_pred             ccccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceec--CCccceEEeeCC
Confidence            5577889999998776422 23345676545567889998886  478999998764

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.72  E-value=3.3e-17  Score=162.59  Aligned_cols=176  Identities=24%  Similarity=0.227  Sum_probs=130.2

Q ss_pred             ceeecCCCCCCCCCccccccccCCCCccEEeccCccccccCchhhh-cccCCcEEeccCCCCCCCCCccCCCCCCCCEEE
Q 047285          257 KALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLR-NLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLS  335 (552)
Q Consensus       257 ~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  335 (552)
                      +.++++++.++.. |.   .+  .+.++.|++++|.+++..+..+. .+++|++|++++|.+++..+..|..+++|++|+
T Consensus        21 ~~l~c~~~~l~~i-P~---~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~   94 (361)
T 2xot_A           21 NILSCSKQQLPNV-PQ---SL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLD   94 (361)
T ss_dssp             TEEECCSSCCSSC-CS---SC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CEEEeCCCCcCcc-Cc---cC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEE
Confidence            5777877777653 22   22  24578888888888876666666 788888888888888887777888888888888


Q ss_pred             ccCccceeecCccccCCCCccCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEc
Q 047285          336 VAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDL  415 (552)
Q Consensus       336 l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l  415 (552)
                      +++|++++ ++...+..+++|+.|++++|. +++..+..|..++                             +|++|++
T Consensus        95 Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~-----------------------------~L~~L~L  143 (361)
T 2xot_A           95 LSSNHLHT-LDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMA-----------------------------QLQKLYL  143 (361)
T ss_dssp             CCSSCCCE-ECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCT-----------------------------TCCEEEC
T ss_pred             CCCCcCCc-CCHHHhCCCcCCCEEECCCCc-ccEECHHHhCCcc-----------------------------cCCEEEC
Confidence            88888874 444447888888888888887 6655555555444                             7888888


Q ss_pred             cCCcCcccCchhh---cCCCCCcEEECCCCcccCCCcccccCCCC--CCEEeCCCCcCC
Q 047285          416 SICQISGHLTNQL---LQFKSLHTLELGHNSLFGPLPPALGELSS--LKKLDLSNNMLN  469 (552)
Q Consensus       416 s~n~~~~~~~~~l---~~l~~L~~L~L~~n~l~~~~~~~l~~l~~--L~~L~L~~n~l~  469 (552)
                      ++|.+++..+..+   ..+++|+.|+|++|++++..+..+..++.  ++.|++++|++.
T Consensus       144 ~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          144 SQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             CCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence            8888886555444   56888888888888888555566777776  478888888876

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.71  E-value=1.2e-16  Score=146.64  Aligned_cols=152  Identities=20%  Similarity=0.307  Sum_probs=117.9

Q ss_pred             cEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCC
Q 047285          284 VFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSG  363 (552)
Q Consensus       284 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~  363 (552)
                      +.++++++.++ .+|..+.  +++++|++++|.+++..+..+..+++|++|++++|++++..+.. +..+++|++|++++
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~-~~~l~~L~~L~Ls~   89 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDA-FQGLRSLNSLVLYG   89 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTT-TTTCSSCCEEECCS
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHH-hhCCcCCCEEECCC
Confidence            45677777666 4555443  67888888888888777777888888888888888888555555 88888888888888


Q ss_pred             CCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCc
Q 047285          364 NSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNS  443 (552)
Q Consensus       364 n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~  443 (552)
                      |. ++...+..|..++                             +|++|++++|.+++..+..+..+++|+.|++++|+
T Consensus        90 N~-l~~l~~~~f~~l~-----------------------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  139 (220)
T 2v9t_B           90 NK-ITELPKSLFEGLF-----------------------------SLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK  139 (220)
T ss_dssp             SC-CCCCCTTTTTTCT-----------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             Cc-CCccCHhHccCCC-----------------------------CCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc
Confidence            87 6644333344443                             78888999998888888888889999999999999


Q ss_pred             ccCCCcccccCCCCCCEEeCCCCcCC
Q 047285          444 LFGPLPPALGELSSLKKLDLSNNMLN  469 (552)
Q Consensus       444 l~~~~~~~l~~l~~L~~L~L~~n~l~  469 (552)
                      +++..+..+..+++|++|++++|++.
T Consensus       140 l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          140 LQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            98777777888999999999999876

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.71  E-value=4.7e-17  Score=146.77  Aligned_cols=106  Identities=20%  Similarity=0.228  Sum_probs=52.2

Q ss_pred             CCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCC
Q 047285          409 ALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLS  488 (552)
Q Consensus       409 ~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  488 (552)
                      +|++|++++|.+++..+..+..+++|++|++++|++++..|..+..+++|++|++++|...+.+| .+..+++|++|+++
T Consensus        89 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~  167 (197)
T 4ezg_A           89 NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQ  167 (197)
T ss_dssp             TCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECT
T ss_pred             CCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECC
Confidence            44455555555544444445555555555555555554444555555555555555554222333 34555555555555


Q ss_pred             CcccceecCHHhhhcCCCCCEEEccCCeee
Q 047285          489 NNKLNASLSEIHFVNLTKLTWFSASGNSLI  518 (552)
Q Consensus       489 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~  518 (552)
                      +|++++ ++  .+..+++|++|++++|++.
T Consensus       168 ~n~i~~-~~--~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          168 FDGVHD-YR--GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             TBCCCC-CT--TGGGCSSCCEEEECBC---
T ss_pred             CCCCcC-hH--HhccCCCCCEEEeeCcccC
Confidence            555533 22  2455555555555555543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.70  E-value=3.5e-17  Score=147.64  Aligned_cols=130  Identities=18%  Similarity=0.201  Sum_probs=111.1

Q ss_pred             CCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeC
Q 047285          408 YALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDL  487 (552)
Q Consensus       408 ~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  487 (552)
                      ++|++|++++|.++.  +..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..|..+..+++|++|++
T Consensus        66 ~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L  143 (197)
T 4ezg_A           66 HNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDL  143 (197)
T ss_dssp             TTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEEC
T ss_pred             CCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEc
Confidence            378888888886653  347888999999999999999878889999999999999999999888899999999999999


Q ss_pred             CCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcccccEEecCCCCCCC
Q 047285          488 SNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLGP  543 (552)
Q Consensus       488 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~  543 (552)
                      ++|+..+.++  .+..+++|++|++++|++.+ ++ .+..+++|+.|++++|++.+
T Consensus       144 ~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          144 SYNGAITDIM--PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             CSCTBCCCCG--GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred             cCCCCccccH--hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence            9998446666  48999999999999999986 33 77889999999999999874

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.69  E-value=6.4e-19  Score=184.28  Aligned_cols=107  Identities=33%  Similarity=0.447  Sum_probs=63.1

Q ss_pred             CCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCC
Q 047285          409 ALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLS  488 (552)
Q Consensus       409 ~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  488 (552)
                      .|+.|++++|.+++ +|. +..+++|+.|++++|+++ .+|..++.+++|+.|+|++|.+++ +| .+..+++|++|+|+
T Consensus       442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls  516 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC  516 (567)
T ss_dssp             TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred             CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence            35566666666654 343 556666666666666665 555566666666666666666653 44 55566666666666


Q ss_pred             Ccccceec-CHHhhhcCCCCCEEEccCCeeeEEc
Q 047285          489 NNKLNASL-SEIHFVNLTKLTWFSASGNSLILKF  521 (552)
Q Consensus       489 ~n~l~~~~-~~~~~~~l~~L~~L~L~~n~~~~~~  521 (552)
                      +|++++.. |. .+..+++|+.|+|++|++.+..
T Consensus       517 ~N~l~~~~~p~-~l~~l~~L~~L~L~~N~l~~~~  549 (567)
T 1dce_A          517 NNRLQQSAAIQ-PLVSCPRLVLLNLQGNSLCQEE  549 (567)
T ss_dssp             SSCCCSSSTTG-GGGGCTTCCEEECTTSGGGGSS
T ss_pred             CCCCCCCCCcH-HHhcCCCCCEEEecCCcCCCCc
Confidence            66665544 44 4566666666666666665443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.69  E-value=4.4e-20  Score=193.11  Aligned_cols=204  Identities=22%  Similarity=0.171  Sum_probs=130.7

Q ss_pred             cCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCc-------------CCCCCccccCCCCCCCEEe-ccCCCCC
Q 047285          123 VDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAK-------------FAGMIPLQLGNLSNLQYLD-LSGTFLS  188 (552)
Q Consensus       123 ~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~-------------~~~~lp~~l~~l~~L~~L~-l~~n~l~  188 (552)
                      ..+++|+.|+|++|.++  .+|+.++.+++|+.|++++|.             ..+.+|..++++++|+.|+ ++.|.+.
T Consensus       346 ~~~~~L~~L~Ls~n~L~--~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~  423 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST--VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD  423 (567)
T ss_dssp             STTTTSSSCCCCHHHHH--HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             ccCccceeccCChhhHH--hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence            56788888888888887  678888888888888886664             4555666677777777776 4443221


Q ss_pred             CCccccCCccccCCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCC
Q 047285          189 NYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDN  268 (552)
Q Consensus       189 ~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~  268 (552)
                                      .|+.+.++.|.+..   ++.     ..|+.|++++|.+++.+ . +..+++|+.|++++|.++ 
T Consensus       424 ----------------~L~~l~l~~n~i~~---l~~-----~~L~~L~Ls~n~l~~lp-~-~~~l~~L~~L~Ls~N~l~-  476 (567)
T 1dce_A          424 ----------------DLRSKFLLENSVLK---MEY-----ADVRVLHLAHKDLTVLC-H-LEQLLLVTHLDLSHNRLR-  476 (567)
T ss_dssp             ----------------HHHHHHHHHHHHHH---HHH-----TTCSEEECTTSCCSSCC-C-GGGGTTCCEEECCSSCCC-
T ss_pred             ----------------hhhhhhhhcccccc---cCc-----cCceEEEecCCCCCCCc-C-ccccccCcEeecCccccc-
Confidence                            12222233333222   111     24777777777777643 3 667777777777777766 


Q ss_pred             CCccccccccCCCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCC-CccCCCCCCCCEEEccCccceeecCc
Q 047285          269 SLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTT-PGWLSKFNDLEFLSVAWNSLQGTISS  347 (552)
Q Consensus       269 ~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~  347 (552)
                      .+|.   .++.+++|+.|++++|.+++ +| .++.+++|++|++++|.+++.. |..+..+++|+.|++++|.+++..+.
T Consensus       477 ~lp~---~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~  551 (567)
T 1dce_A          477 ALPP---ALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI  551 (567)
T ss_dssp             CCCG---GGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred             ccch---hhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence            4444   66677777777777777774 55 6777777777777777777665 66777777777777777777644332


Q ss_pred             c--ccCCCCccCEEe
Q 047285          348 V--GLENLTSIETLD  360 (552)
Q Consensus       348 ~--~l~~l~~L~~L~  360 (552)
                      .  .+..+++|+.|+
T Consensus       552 ~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          552 QERLAEMLPSVSSIL  566 (567)
T ss_dssp             TTHHHHHCTTCSEEE
T ss_pred             HHHHHHHCcccCccC
Confidence            1  122356666664

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.67  E-value=1.6e-16  Score=150.10  Aligned_cols=170  Identities=21%  Similarity=0.301  Sum_probs=108.8

Q ss_pred             CCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCC
Q 047285          124 DLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGL  203 (552)
Q Consensus       124 ~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l  203 (552)
                      .+.++..++++++.+++  ++ .+..+++|++|++++|+++ .+| .+..+++|++|++++|.++.++.       +..+
T Consensus        17 ~l~~l~~l~l~~~~i~~--~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~-------l~~l   84 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTD--LV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP-------LKDL   84 (263)
T ss_dssp             HHHHHHHHHHTCSCTTS--EE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG-------GTTC
T ss_pred             HHHHHHHHHhcCCCccc--cc-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh-------hccC
Confidence            45566677777777774  34 4667777888888777776 344 56677777777777776655431       4455


Q ss_pred             CCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCCc
Q 047285          204 YMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNL  283 (552)
Q Consensus       204 ~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L  283 (552)
                      ++|++|++++|.+++                          .++...   ++|+.|++++|.+++.  .   .+..+++|
T Consensus        85 ~~L~~L~L~~N~l~~--------------------------l~~~~~---~~L~~L~L~~N~l~~~--~---~l~~l~~L  130 (263)
T 1xeu_A           85 TKLEELSVNRNRLKN--------------------------LNGIPS---ACLSRLFLDNNELRDT--D---SLIHLKNL  130 (263)
T ss_dssp             SSCCEEECCSSCCSC--------------------------CTTCCC---SSCCEEECCSSCCSBS--G---GGTTCTTC
T ss_pred             CCCCEEECCCCccCC--------------------------cCcccc---CcccEEEccCCccCCC--h---hhcCcccc
Confidence            555555555555544                          222111   4555555555555442  1   45567777


Q ss_pred             cEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCcccee
Q 047285          284 VFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQG  343 (552)
Q Consensus       284 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  343 (552)
                      ++|++++|.+++. + .+..+++|++|++++|.+++.  ..+..+++|+.|++++|.+++
T Consensus       131 ~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~  186 (263)
T 1xeu_A          131 EILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN  186 (263)
T ss_dssp             CEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred             cEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence            7777777777643 3 577778888888888877765  557777888888888887764

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.66  E-value=5.8e-16  Score=146.19  Aligned_cols=152  Identities=20%  Similarity=0.276  Sum_probs=123.0

Q ss_pred             cccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCcccc
Q 047285          121 SLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWL  200 (552)
Q Consensus       121 ~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l  200 (552)
                      .+..+++|++|++++|.++.  ++ .++.+++|++|++++|++++. |. +.++++|++|++++|.++.++.       +
T Consensus        36 ~~~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N~l~~l~~-------~  103 (263)
T 1xeu_A           36 SQKELSGVQNFNGDNSNIQS--LA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRNRLKNLNG-------I  103 (263)
T ss_dssp             CHHHHTTCSEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSSCCSCCTT-------C
T ss_pred             chhhcCcCcEEECcCCCccc--ch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEECCCCccCCcCc-------c
Confidence            57899999999999999984  56 688999999999999999864 44 9999999999999999887653       2


Q ss_pred             CCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCC
Q 047285          201 SGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGL  280 (552)
Q Consensus       201 ~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l  280 (552)
                      .. ++|++|++++|.+++.    ..+..+++|++|++++|.+++..  .+..+++|+.|++++|.+.+.  .   .+..+
T Consensus       104 ~~-~~L~~L~L~~N~l~~~----~~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~~--~---~l~~l  171 (263)
T 1xeu_A          104 PS-ACLSRLFLDNNELRDT----DSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT--G---GLTRL  171 (263)
T ss_dssp             CC-SSCCEEECCSSCCSBS----GGGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCBC--T---TSTTC
T ss_pred             cc-CcccEEEccCCccCCC----hhhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcch--H---HhccC
Confidence            33 8999999999998874    24678889999999999887763  467777888888888777765  2   56667


Q ss_pred             CCccEEeccCcccccc
Q 047285          281 RNLVFIDLSSNQFQGQ  296 (552)
Q Consensus       281 ~~L~~L~L~~n~~~~~  296 (552)
                      ++|+.|++++|.+.+.
T Consensus       172 ~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          172 KKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             CCCCEEEEEEEEEECC
T ss_pred             CCCCEEeCCCCcccCC
Confidence            7777777777776644

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.66  E-value=9.3e-16  Score=137.50  Aligned_cols=132  Identities=22%  Similarity=0.263  Sum_probs=77.8

Q ss_pred             CEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcc-cccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCC
Q 047285          411 ESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPP-ALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSN  489 (552)
Q Consensus       411 ~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  489 (552)
                      ++++++++.++ .+|..+.  .+|++|++++|++++..+. .+..+++|++|++++|.+++..|..+.++++|++|++++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            45666666654 3443332  2566666666666544332 355666666666666666655566666666666666666


Q ss_pred             cccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcccccEEecCCCCCCCCCC
Q 047285          490 NKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLGPHFP  546 (552)
Q Consensus       490 n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~iP  546 (552)
                      |++++..+. .+.++++|++|+|++|++.+..|..+..+.+|+.|++++|++.+..|
T Consensus        88 N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           88 NKIKEISNK-MFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CCCCEECSS-SSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CcCCccCHH-HhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            666554444 45566666666666666666666666666666666666666665544

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.64  E-value=3.3e-17  Score=176.74  Aligned_cols=180  Identities=21%  Similarity=0.142  Sum_probs=98.7

Q ss_pred             CCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccc
Q 047285          321 TPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLD  400 (552)
Q Consensus       321 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~  400 (552)
                      .+..+..+++|+.|++++|.+. .++.. +..+++|+.|+|++|. ++ .+|..++.++                     
T Consensus       216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~-~~~l~~L~~L~Ls~N~-l~-~lp~~~~~l~---------------------  270 (727)
T 4b8c_D          216 PKDSKYDDQLWHALDLSNLQIF-NISAN-IFKYDFLTRLYLNGNS-LT-ELPAEIKNLS---------------------  270 (727)
T ss_dssp             ------CCCCCCEEECTTSCCS-CCCGG-GGGCCSCSCCBCTTSC-CS-CCCGGGGGGT---------------------
T ss_pred             ChhhhccCCCCcEEECCCCCCC-CCChh-hcCCCCCCEEEeeCCc-Cc-ccChhhhCCC---------------------
Confidence            3555666677777777777766 55555 4467777777777776 55 6666665555                     


Q ss_pred             cccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCC
Q 047285          401 TFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLS  480 (552)
Q Consensus       401 ~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~  480 (552)
                              +|++|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..|+.+++|++|+|++|.+++.+|..+..+.
T Consensus       271 --------~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~  340 (727)
T 4b8c_D          271 --------NLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKS  340 (727)
T ss_dssp             --------TCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHH
T ss_pred             --------CCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcc
Confidence                    6777888888777 56777777888888888888776 6777777888888888888888777776654432


Q ss_pred             C-CCeeeCCCcccceecCHHhhhcCCCCCEEEccCC--------eeeEEcCCCCcCcccccEEecCCCCCC
Q 047285          481 H-LEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGN--------SLILKFNPNWVPPFQLETLQLRSCHLG  542 (552)
Q Consensus       481 ~-L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n--------~~~~~~~~~~~~~~~L~~L~l~~n~~~  542 (552)
                      . +..+++++|.+++.+|.       .|+.|+++.|        .+....+..+..+..+....+++|-+.
T Consensus       341 ~~~~~l~l~~N~l~~~~p~-------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~  404 (727)
T 4b8c_D          341 VTGLIFYLRDNRPEIPLPH-------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC  404 (727)
T ss_dssp             HHHHHHHHHHCCCCCCCCC-------C-----------------------------------------CCC
T ss_pred             hhhhHHhhccCcccCcCcc-------ccceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence            1 22367777777776664       4455666665        222333333444555666677777665

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.63  E-value=1.9e-16  Score=138.92  Aligned_cols=139  Identities=25%  Similarity=0.218  Sum_probs=120.1

Q ss_pred             CCCCCEEEccCCcCc-ccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCee
Q 047285          407 AYALESLDLSICQIS-GHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYL  485 (552)
Q Consensus       407 ~~~L~~L~ls~n~~~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  485 (552)
                      .++|++|++++|.++ +.+|..+..+++|+.|++++|++++.  ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            358999999999998 67888889999999999999999855  778999999999999999998788888889999999


Q ss_pred             eCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcC---CCCcCcccccEEecCCCCCCCCCCcc
Q 047285          486 DLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFN---PNWVPPFQLETLQLRSCHLGPHFPSW  548 (552)
Q Consensus       486 ~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~---~~~~~~~~L~~L~l~~n~~~~~iP~~  548 (552)
                      ++++|++++......+..+++|++|++++|++.+..+   ..+..+++|+.|++++|.+. ++|+.
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~  165 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDS  165 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence            9999999664321268899999999999999985543   36778899999999999988 77764

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.63  E-value=1.5e-16  Score=155.76  Aligned_cols=223  Identities=12%  Similarity=0.094  Sum_probs=135.5

Q ss_pred             CCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccc---eeecCccccCCCCcc
Q 047285          280 LRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSL---QGTISSVGLENLTSI  356 (552)
Q Consensus       280 l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l---~~~~~~~~l~~l~~L  356 (552)
                      +++|+.+++.+ .++..-...|..|++|+++++.+|.+....+..|..+.++..+....+..   ...+....+..+..|
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L  178 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL  178 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence            56666666665 45444445566666677777766666655566666665555555443211   012222334455566


Q ss_pred             C-EEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhh-cCCCCC
Q 047285          357 E-TLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQL-LQFKSL  434 (552)
Q Consensus       357 ~-~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l-~~l~~L  434 (552)
                      + .+.+....    .++..+....                         ....+++.+.+.++-.. .....+ ..+++|
T Consensus       179 ~~~i~~~~~~----~l~~~~~~~~-------------------------~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L  228 (329)
T 3sb4_A          179 ETTIQVGAMG----KLEDEIMKAG-------------------------LQPRDINFLTIEGKLDN-ADFKLIRDYMPNL  228 (329)
T ss_dssp             EEEEEECTTC----CHHHHHHHTT-------------------------CCGGGCSEEEEEECCCH-HHHHHHHHHCTTC
T ss_pred             ceeEEecCCC----cHHHHHhhcc-------------------------cCccccceEEEeeeecH-HHHHHHHHhcCCC
Confidence            6 45554432    3343332211                         01124556665554221 112222 237788


Q ss_pred             cEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCC-eeeCCCcccceecCHHhhhcCCCCCEEEcc
Q 047285          435 HTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLE-YLDLSNNKLNASLSEIHFVNLTKLTWFSAS  513 (552)
Q Consensus       435 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~  513 (552)
                      +.++|++|+++...+.+|.++++|+++++.+| ++..-+..|.++++|+ .+++.+ .+ ..++...|.+|++|+.++++
T Consensus       229 ~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l-~~I~~~aF~~c~~L~~l~l~  305 (329)
T 3sb4_A          229 VSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SV-TAIEFGAFMGCDNLRYVLAT  305 (329)
T ss_dssp             CEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TC-CEECTTTTTTCTTEEEEEEC
T ss_pred             eEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cc-eEEchhhhhCCccCCEEEeC
Confidence            88888888877555567788888888888887 5544455678888888 888887 55 45555588888888888888


Q ss_pred             CCeeeEEcCCCCcCcccccEEec
Q 047285          514 GNSLILKFNPNWVPPFQLETLQL  536 (552)
Q Consensus       514 ~n~~~~~~~~~~~~~~~L~~L~l  536 (552)
                      +|.+...-+..|..+.+|+.++.
T Consensus       306 ~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          306 GDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             SSCCCEECTTTTCTTCCCCEEEC
T ss_pred             CCccCccchhhhcCCcchhhhcc
Confidence            88888777778888888888764

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.62  E-value=8e-16  Score=137.90  Aligned_cols=128  Identities=23%  Similarity=0.253  Sum_probs=84.1

Q ss_pred             CCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCC
Q 047285          409 ALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLS  488 (552)
Q Consensus       409 ~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  488 (552)
                      +|++|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|++|++++|++++..|..+..+++|++|+++
T Consensus        55 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  134 (192)
T 1w8a_A           55 HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA  134 (192)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECT
T ss_pred             CCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeC
Confidence            67777777777777777777777788888888888877667777778888888888888877777777778888888888


Q ss_pred             CcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcccccEEecCCCCC
Q 047285          489 NNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHL  541 (552)
Q Consensus       489 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~  541 (552)
                      +|++.+..+...+...  ++...+..+...+..|..+..   ....++..+.+
T Consensus       135 ~N~l~c~c~l~~~~~~--l~~~~~~~~~~~C~~P~~l~~---~~l~~l~~~~~  182 (192)
T 1w8a_A          135 SNPFNCNCHLAWFAEW--LRKKSLNGGAARCGAPSKVRD---VQIKDLPHSEF  182 (192)
T ss_dssp             TCCBCCSGGGHHHHHH--HHHHCCSGGGCBBCSSTTTTT---SBGGGSCTTTC
T ss_pred             CCCccCcCcchHHHHH--HHHcCCCCCCCCCCCChHHcC---CChhhCcHhhc
Confidence            8887766553222211  111233344445555554433   33344444444

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.59  E-value=8.6e-16  Score=131.75  Aligned_cols=128  Identities=24%  Similarity=0.205  Sum_probs=109.5

Q ss_pred             CCCCEEEccCCcCc-ccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeee
Q 047285          408 YALESLDLSICQIS-GHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLD  486 (552)
Q Consensus       408 ~~L~~L~ls~n~~~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  486 (552)
                      +++++|++++|.++ +.+|..+..+++|+.|++++|++++.  ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            47999999999998 77888889999999999999999865  7788999999999999999977888888899999999


Q ss_pred             CCCccccee-cCHHhhhcCCCCCEEEccCCeeeEEcC---CCCcCcccccEEecCC
Q 047285          487 LSNNKLNAS-LSEIHFVNLTKLTWFSASGNSLILKFN---PNWVPPFQLETLQLRS  538 (552)
Q Consensus       487 L~~n~l~~~-~~~~~~~~l~~L~~L~L~~n~~~~~~~---~~~~~~~~L~~L~l~~  538 (552)
                      +++|++++. .+. .+..+++|++|++++|++.+..+   ..+..+++|+.|++++
T Consensus        95 ls~N~i~~~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           95 LSGNKIKDLSTIE-PLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CTTSCCCSHHHHG-GGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCCCcCCChHHHH-HHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            999999763 224 68899999999999999886544   3567788999998864

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.59  E-value=2.8e-15  Score=128.54  Aligned_cols=104  Identities=28%  Similarity=0.320  Sum_probs=75.2

Q ss_pred             CCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCcc-CcccccCCCCCCeeeC
Q 047285          409 ALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGF-IPLSLGKLSHLEYLDL  487 (552)
Q Consensus       409 ~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L  487 (552)
                      +|++|++++|.+++.  ..+..+++|++|++++|++++.+|..+..+++|++|++++|.+++. .+..+..+++|++|++
T Consensus        43 ~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l  120 (149)
T 2je0_A           43 ELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDL  120 (149)
T ss_dssp             TCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEEC
T ss_pred             CCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeC
Confidence            677777777777654  5667777788888888887766777777777888888888887752 3366777888888888


Q ss_pred             CCcccceecC--HHhhhcCCCCCEEEccC
Q 047285          488 SNNKLNASLS--EIHFVNLTKLTWFSASG  514 (552)
Q Consensus       488 ~~n~l~~~~~--~~~~~~l~~L~~L~L~~  514 (552)
                      ++|++++..+  ...+..+++|++|++++
T Consensus       121 ~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          121 FNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             TTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             cCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            8888866554  12577788888887753

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.59  E-value=2.1e-15  Score=147.67  Aligned_cols=287  Identities=17%  Similarity=0.115  Sum_probs=184.3

Q ss_pred             CCCCCEEeccCCCCCCCccccCCccccCC-CCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccC
Q 047285          174 LSNLQYLDLSGTFLSNYDLHVDSLSWLSG-LYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSAN  252 (552)
Q Consensus       174 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~-l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~  252 (552)
                      +.++++|.++++- .     ...+..+.. +++|+.|||++|++......   ...++.++.+.+..+   ..++..|.+
T Consensus        24 ~~~l~~L~l~g~i-~-----~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~---~~~~~~~~~~~~~~~---~I~~~aF~~   91 (329)
T 3sb4_A           24 ANSITHLTLTGKL-N-----AEDFRHLRDEFPSLKVLDISNAEIKMYSGK---AGTYPNGKFYIYMAN---FVPAYAFSN   91 (329)
T ss_dssp             HHHCSEEEEEEEE-C-----HHHHHHHHHSCTTCCEEEEEEEEECCEEES---SSSSGGGCCEEECTT---EECTTTTEE
T ss_pred             hCceeEEEEeccc-c-----HHHHHHHHHhhccCeEEecCcceeEEecCc---ccccccccccccccc---ccCHHHhcc
Confidence            5567777776531 0     111222334 78899999999988732111   112233444554444   345566677


Q ss_pred             --------CCCCceeecCCCCCCCCCccccccccCCCCccEEeccCccccccCchhhhcccCCcEEeccCCC----CCCC
Q 047285          253 --------FSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNY----FNST  320 (552)
Q Consensus       253 --------l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~----l~~~  320 (552)
                              +++|+.+++.. .++.....   .|..+++|+.+++.+|.+....+..|..+.++..+....+.    ....
T Consensus        92 ~~~~~~~g~~~L~~l~L~~-~i~~I~~~---aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i  167 (329)
T 3sb4_A           92 VVNGVTKGKQTLEKVILSE-KIKNIEDA---AFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRW  167 (329)
T ss_dssp             EETTEEEECTTCCC-CBCT-TCCEECTT---TTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTT
T ss_pred             cccccccccCCCcEEECCc-cccchhHH---HhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccc
Confidence                    89999999987 66655555   67788999999999988876666777777777777665532    2222


Q ss_pred             CCccCCCCCCCC-EEEccCccceeecCccc---cCCCCccCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCc
Q 047285          321 TPGWLSKFNDLE-FLSVAWNSLQGTISSVG---LENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFS  396 (552)
Q Consensus       321 ~~~~l~~l~~L~-~L~l~~n~l~~~~~~~~---l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~  396 (552)
                      ....|.++..|+ .+.+....   .++...   .....+++.+.+.++-  .......+..                   
T Consensus       168 ~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l--~~~~~~~l~~-------------------  223 (329)
T 3sb4_A          168 EHFAFIEGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKL--DNADFKLIRD-------------------  223 (329)
T ss_dssp             TTSCEEESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECC--CHHHHHHHHH-------------------
T ss_pred             cccccccccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeee--cHHHHHHHHH-------------------
Confidence            334455566666 44443321   122111   1234556666665542  1111111111                   


Q ss_pred             cccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCC-EEeCCCCcCCccCccc
Q 047285          397 QVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLK-KLDLSNNMLNGFIPLS  475 (552)
Q Consensus       397 ~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~-~L~L~~n~l~~~~~~~  475 (552)
                               .+++|+.+++++|.++......|.++++|+.+++.+| +....+.+|.++++|+ .+++.+ .++..-+..
T Consensus       224 ---------~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~a  292 (329)
T 3sb4_A          224 ---------YMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGA  292 (329)
T ss_dssp             ---------HCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTT
T ss_pred             ---------hcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhh
Confidence                     1347899999998888777778888999999999887 6655567788999999 999988 666455677


Q ss_pred             ccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEc
Q 047285          476 LGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSA  512 (552)
Q Consensus       476 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L  512 (552)
                      |.+|++|+.++++.|+++ .++...|.++++|+.++.
T Consensus       293 F~~c~~L~~l~l~~n~i~-~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          293 FMGCDNLRYVLATGDKIT-TLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             TTTCTTEEEEEECSSCCC-EECTTTTCTTCCCCEEEC
T ss_pred             hhCCccCCEEEeCCCccC-ccchhhhcCCcchhhhcc
Confidence            888999999999888884 455558899999988763

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.58  E-value=9.7e-15  Score=127.90  Aligned_cols=132  Identities=25%  Similarity=0.254  Sum_probs=77.8

Q ss_pred             cCCcEEeccCCCCC-CCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCCCCCCCCCchhHhhcccCce
Q 047285          305 TSLRHLDLRFNYFN-STTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTS  383 (552)
Q Consensus       305 ~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~  383 (552)
                      ++|++|++++|.++ +.+|..+..+++|++|++++|.+++.  . .+..+++|+.|++++|. +++.+|..+..++    
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~-~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~----   95 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--S-NLPKLPKLKKLELSENR-IFGGLDMLAEKLP----   95 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--S-SCCCCSSCCEEEEESCC-CCSCCCHHHHHCT----
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--h-hhccCCCCCEEECcCCc-CchHHHHHHhhCC----
Confidence            55666666666665 45555555566666666666665532  2 25666666666666666 5555555554444    


Q ss_pred             eecccccCCCCCccccccccccCCCCCCEEEccCCcCcccC-chhhcCCCCCcEEECCCCcccCCCc---ccccCCCCCC
Q 047285          384 VDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHL-TNQLLQFKSLHTLELGHNSLFGPLP---PALGELSSLK  459 (552)
Q Consensus       384 l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~  459 (552)
                                               +|++|++++|.+++.. +..+..+++|+.|++++|++++..+   ..+..+++|+
T Consensus        96 -------------------------~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~  150 (168)
T 2ell_A           96 -------------------------NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLT  150 (168)
T ss_dssp             -------------------------TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCC
T ss_pred             -------------------------CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCc
Confidence                                     5666666666666532 2455666666666666666664333   2556666666


Q ss_pred             EEeCCCCcCC
Q 047285          460 KLDLSNNMLN  469 (552)
Q Consensus       460 ~L~L~~n~l~  469 (552)
                      +|++++|.+.
T Consensus       151 ~L~l~~n~~~  160 (168)
T 2ell_A          151 YLDGYDREDQ  160 (168)
T ss_dssp             EETTEETTSC
T ss_pred             EecCCCCChh
Confidence            6666666654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.57  E-value=1.7e-14  Score=127.49  Aligned_cols=133  Identities=23%  Similarity=0.200  Sum_probs=74.2

Q ss_pred             CCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCC
Q 047285          410 LESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSN  489 (552)
Q Consensus       410 L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  489 (552)
                      .+.++++++.++. +|..+  .++|+.|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus         9 ~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            3455566655553 23222  24566666666666544444455666666666666666544444455666666666666


Q ss_pred             cccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcccccEEecCCCCCCCCCC
Q 047285          490 NKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLGPHFP  546 (552)
Q Consensus       490 n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~iP  546 (552)
                      |++++..+. .+..+++|++|++++|++.+..+..+..+.+|+.|++++|++.+..|
T Consensus        86 N~l~~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           86 NKLQSLPNG-VFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             SCCCCCCTT-TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCccccCHH-HhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            666543333 45556666666666666654333334555666666666666665544

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.56  E-value=2.3e-14  Score=128.30  Aligned_cols=112  Identities=23%  Similarity=0.317  Sum_probs=79.4

Q ss_pred             CCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeC
Q 047285          408 YALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDL  487 (552)
Q Consensus       408 ~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  487 (552)
                      +++++|++++|.++ .+|..+..+++|+.|++++|++++..+..|..+++|++|++++|.+++..|..+..+++|++|+|
T Consensus        31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L  109 (193)
T 2wfh_A           31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL  109 (193)
T ss_dssp             TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence            36777777777776 45567777777777777777777666666777777777777777777666666777777777777


Q ss_pred             CCcccceecCHHhhhcCCCCCEEEccCCeeeEEc
Q 047285          488 SNNKLNASLSEIHFVNLTKLTWFSASGNSLILKF  521 (552)
Q Consensus       488 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~  521 (552)
                      ++|++++ ++...+..+++|+.|++++|++.+..
T Consensus       110 ~~N~l~~-~~~~~~~~l~~L~~L~L~~N~~~C~c  142 (193)
T 2wfh_A          110 HGNDISV-VPEGAFNDLSALSHLAIGANPLYCDC  142 (193)
T ss_dssp             CSSCCCB-CCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred             CCCCCCe-eChhhhhcCccccEEEeCCCCeecCC
Confidence            7777754 33335677777777777777776554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.54  E-value=5e-14  Score=126.11  Aligned_cols=108  Identities=25%  Similarity=0.303  Sum_probs=51.9

Q ss_pred             CCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEE
Q 047285          432 KSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFS  511 (552)
Q Consensus       432 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  511 (552)
                      ++|++|++++|+++ .+|..+..+++|++|++++|.+++..+..+.++++|++|+|++|++++..+. .+..+++|++|+
T Consensus        31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~-~f~~l~~L~~L~  108 (193)
T 2wfh_A           31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPR-TFDGLKSLRLLS  108 (193)
T ss_dssp             TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT-TTTTCTTCCEEE
T ss_pred             CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHH-HhCCCCCCCEEE
Confidence            34555555555544 3444445555555555555555444444444555555555555555433333 444455555555


Q ss_pred             ccCCeeeEEcCCCCcCcccccEEecCCCCC
Q 047285          512 ASGNSLILKFNPNWVPPFQLETLQLRSCHL  541 (552)
Q Consensus       512 L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~  541 (552)
                      |++|++....+..+..+.+|+.|++++|++
T Consensus       109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A          109 LHGNDISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             CCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence            555555433333344444555555555544

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.51  E-value=1.6e-13  Score=121.20  Aligned_cols=87  Identities=26%  Similarity=0.263  Sum_probs=38.3

Q ss_pred             CCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCC
Q 047285          409 ALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLS  488 (552)
Q Consensus       409 ~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  488 (552)
                      +|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus        53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~  132 (177)
T 2o6r_A           53 QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLH  132 (177)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             cccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEec
Confidence            34444444444443333334444444444444444443333334444444444444444443222233444444444444


Q ss_pred             Cccccee
Q 047285          489 NNKLNAS  495 (552)
Q Consensus       489 ~n~l~~~  495 (552)
                      +|++.+.
T Consensus       133 ~N~~~~~  139 (177)
T 2o6r_A          133 TNPWDCS  139 (177)
T ss_dssp             SSCBCCC
T ss_pred             CCCeecc
Confidence            4444443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.49  E-value=1.2e-12  Score=130.93  Aligned_cols=217  Identities=12%  Similarity=0.136  Sum_probs=119.1

Q ss_pred             CccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeC
Q 047285          282 NLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDL  361 (552)
Q Consensus       282 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l  361 (552)
                      +|+.+.+.+ .+...-...|..|++|+.+++.+|.++......|. +.+|+.+.+..+ +. .+...+|..+++|+.+++
T Consensus       158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l  233 (401)
T 4fdw_A          158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEI  233 (401)
T ss_dssp             CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CC-EECTTTTTTCTTCCCEEC
T ss_pred             CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hh-eehhhHhhCCCCCCEEec
Confidence            455555554 33333344566666666666666666554444454 466666666543 33 555555666677777766


Q ss_pred             CCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCC
Q 047285          362 SGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGH  441 (552)
Q Consensus       362 ~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~  441 (552)
                      ..+  ++......|.. .                             +|+.+.+. +.++......|.++++|+.+++.+
T Consensus       234 ~~~--l~~I~~~aF~~-~-----------------------------~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~  280 (401)
T 4fdw_A          234 PEN--VSTIGQEAFRE-S-----------------------------GITTVKLP-NGVTNIASRAFYYCPELAEVTTYG  280 (401)
T ss_dssp             CTT--CCEECTTTTTT-C-----------------------------CCSEEEEE-TTCCEECTTTTTTCTTCCEEEEES
T ss_pred             CCC--ccCcccccccc-C-----------------------------CccEEEeC-CCccEEChhHhhCCCCCCEEEeCC
Confidence            654  32222222322 2                             45555552 334434445566666666666665


Q ss_pred             Cccc-----CCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCe
Q 047285          442 NSLF-----GPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNS  516 (552)
Q Consensus       442 n~l~-----~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~  516 (552)
                      |.+.     ...+..|.++++|+.+++.+ .++..-...|.+|++|+.+.|..+ + ..+....|.++ +|+.+++.+|.
T Consensus       281 ~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l-~~I~~~aF~~~-~L~~l~l~~n~  356 (401)
T 4fdw_A          281 STFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-V-TQINFSAFNNT-GIKEVKVEGTT  356 (401)
T ss_dssp             SCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-C-CEECTTSSSSS-CCCEEEECCSS
T ss_pred             ccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-c-cEEcHHhCCCC-CCCEEEEcCCC
Confidence            5443     12334566666777777663 344333445666677777777544 3 34444466666 77777777766


Q ss_pred             eeEEcCCCCcCcc-cccEEecCCC
Q 047285          517 LILKFNPNWVPPF-QLETLQLRSC  539 (552)
Q Consensus       517 ~~~~~~~~~~~~~-~L~~L~l~~n  539 (552)
                      .....+..|..+. .++.|.+..+
T Consensus       357 ~~~l~~~~F~~~~~~l~~l~vp~~  380 (401)
T 4fdw_A          357 PPQVFEKVWYGFPDDITVIRVPAE  380 (401)
T ss_dssp             CCBCCCSSCCCSCTTCCEEEECGG
T ss_pred             CcccccccccCCCCCccEEEeCHH
Confidence            5544444555542 5666666554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.45  E-value=8.3e-14  Score=122.90  Aligned_cols=131  Identities=22%  Similarity=0.182  Sum_probs=101.6

Q ss_pred             CCCCCCEEEccCCcCcccCchhhcCC-CCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCe
Q 047285          406 GAYALESLDLSICQISGHLTNQLLQF-KSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEY  484 (552)
Q Consensus       406 ~~~~L~~L~ls~n~~~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  484 (552)
                      .+.+|++|++++|.++.. +. +..+ ++|+.|++++|++++.  ..+..+++|++|++++|.+++..+..+..+++|++
T Consensus        17 ~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   92 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   92 (176)
T ss_dssp             CTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             CcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence            456889999999988853 44 4444 4899999999998854  56888899999999999988554455588899999


Q ss_pred             eeCCCcccceecCH-HhhhcCCCCCEEEccCCeeeEEcCCC----CcCcccccEEecCCCCCC
Q 047285          485 LDLSNNKLNASLSE-IHFVNLTKLTWFSASGNSLILKFNPN----WVPPFQLETLQLRSCHLG  542 (552)
Q Consensus       485 L~L~~n~l~~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~----~~~~~~L~~L~l~~n~~~  542 (552)
                      |++++|++ +.+|. ..+..+++|++|++++|++. ..|..    +..+++|+.||+++|...
T Consensus        93 L~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           93 LILTNNSL-VELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             EECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             EECCCCcC-CcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            99999998 44553 25778899999999999987 44543    667888999999888754

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.45  E-value=1e-13  Score=122.29  Aligned_cols=115  Identities=18%  Similarity=0.143  Sum_probs=83.8

Q ss_pred             cccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCcccc
Q 047285          121 SLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWL  200 (552)
Q Consensus       121 ~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l  200 (552)
                      .+.++.+|++|++++|.++.  +|......++|++|++++|++++.  ..++++++|++|++++|.++.++...     +
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~-----~   84 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGL-----D   84 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCH-----H
T ss_pred             hcCCcCCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcch-----h
Confidence            46778899999999999984  565434345999999999999854  57888999999999999887655321     3


Q ss_pred             CCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCC
Q 047285          201 SGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHF  245 (552)
Q Consensus       201 ~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  245 (552)
                      ..+++|++|++++|.+...+.+ ..+..+++|++|++++|.+...
T Consensus        85 ~~l~~L~~L~L~~N~i~~~~~~-~~l~~l~~L~~L~l~~N~i~~~  128 (176)
T 1a9n_A           85 QALPDLTELILTNNSLVELGDL-DPLASLKSLTYLCILRNPVTNK  128 (176)
T ss_dssp             HHCTTCCEEECCSCCCCCGGGG-GGGGGCTTCCEEECCSSGGGGS
T ss_pred             hcCCCCCEEECCCCcCCcchhh-HhhhcCCCCCEEEecCCCCCCc
Confidence            6677888888888877653321 2455667777777777766544

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.43  E-value=5.9e-12  Score=125.80  Aligned_cols=249  Identities=8%  Similarity=0.079  Sum_probs=120.9

Q ss_pred             cCCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccC
Q 047285          200 LSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFG  279 (552)
Q Consensus       200 l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~  279 (552)
                      |.++ +|+.+.+..+ +..+.  ...+.+ .+|+.+.+.. .+..+....|.++++|+.+++..|.++.....   .+. 
T Consensus       132 F~~~-~L~~i~l~~~-i~~I~--~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~---aF~-  201 (401)
T 4fdw_A          132 FRNS-QIAKVVLNEG-LKSIG--DMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPAS---TFV-  201 (401)
T ss_dssp             TTTC-CCSEEECCTT-CCEEC--TTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTT---TTT-
T ss_pred             cccC-CccEEEeCCC-ccEEC--HHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechh---hEe-
Confidence            4443 5777776655 32211  112233 2566666664 45555556666666666666665555443332   222 


Q ss_pred             CCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEE
Q 047285          280 LRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETL  359 (552)
Q Consensus       280 l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L  359 (552)
                      +.+|+.+.+.++ +...-...|..+++|+.+++..+ ++......|.+ .+|+.+.+.. .++ .++..+|..+++|+.+
T Consensus       202 ~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~-~I~~~aF~~c~~L~~l  276 (401)
T 4fdw_A          202 YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVT-NIASRAFYYCPELAEV  276 (401)
T ss_dssp             TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCC-EECTTTTTTCTTCCEE
T ss_pred             ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-Ccc-EEChhHhhCCCCCCEE
Confidence            355666665533 33333345555555555555543 33333334444 4555555532 232 3444445555555555


Q ss_pred             eCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEEC
Q 047285          360 DLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLEL  439 (552)
Q Consensus       360 ~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L  439 (552)
                      ++.++. ..                        ......+....+.+|++|+.+.+.+ .++......|.++++|+.+.|
T Consensus       277 ~l~~~~-~~------------------------~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~l  330 (401)
T 4fdw_A          277 TTYGST-FN------------------------DDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTI  330 (401)
T ss_dssp             EEESSC-CC------------------------CCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEE
T ss_pred             EeCCcc-cc------------------------CCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEE
Confidence            555443 11                        0001112222334445566666653 344444455566666666666


Q ss_pred             CCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCC-CCCeeeCCCcc
Q 047285          440 GHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLS-HLEYLDLSNNK  491 (552)
Q Consensus       440 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~  491 (552)
                      ..+ ++..-..+|.++ +|+.+++.+|......+..|.+++ +++.|++..+.
T Consensus       331 p~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~  381 (401)
T 4fdw_A          331 PAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES  381 (401)
T ss_dssp             CTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred             Ccc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence            443 333334455566 666666666655433334444443 45556555544

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.43  E-value=1.1e-11  Score=124.22  Aligned_cols=329  Identities=11%  Similarity=0.075  Sum_probs=149.4

Q ss_pred             ccccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccc
Q 047285          120 PSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSW  199 (552)
Q Consensus       120 ~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~  199 (552)
                      .+|.++++|+.+++..+ ++.+ -..+|.+|++|+.+++..+ ++..-...+.++++|+.+.+..+ +..++..     .
T Consensus        65 ~AF~~c~~L~~i~lp~~-i~~I-~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~-----a  135 (394)
T 4fs7_A           65 AAFQGCRKVTEIKIPST-VREI-GEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVE-----A  135 (394)
T ss_dssp             TTTTTCTTEEEEECCTT-CCEE-CTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTT-----T
T ss_pred             HHhhCCCCceEEEeCCC-ccCc-chhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecce-----e
Confidence            45777888888888643 5532 2456777888888888654 43233345667777776665433 1111111     1


Q ss_pred             cCCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccC
Q 047285          200 LSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFG  279 (552)
Q Consensus       200 l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~  279 (552)
                      +..+..++..........+    ...+..+++|+.+.+..+ +.......|.                           .
T Consensus       136 F~~~~~~~~~~~~~~~~i~----~~aF~~c~~L~~i~l~~~-~~~I~~~~F~---------------------------~  183 (394)
T 4fs7_A          136 FKGCDFKEITIPEGVTVIG----DEAFATCESLEYVSLPDS-METLHNGLFS---------------------------G  183 (394)
T ss_dssp             TTTCCCSEEECCTTCCEEC----TTTTTTCTTCCEEECCTT-CCEECTTTTT---------------------------T
T ss_pred             eecccccccccCccccccc----hhhhcccCCCcEEecCCc-cceecccccc---------------------------C
Confidence            2233222221111111100    122344455555554332 2223333344                           4


Q ss_pred             CCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEE
Q 047285          280 LRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETL  359 (552)
Q Consensus       280 l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L  359 (552)
                      +.+|+.+.+..+ ++......+..+..|+.+.+..+...  +........+|+.+.+... ++ .+....+..+..++.+
T Consensus       184 c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~-~i~~~~f~~~~~l~~~  258 (394)
T 4fs7_A          184 CGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FT-ELGKSVFYGCTDLESI  258 (394)
T ss_dssp             CTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CC-EECSSTTTTCSSCCEE
T ss_pred             CCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccCCCceEEECCC-ce-ecccccccccccceeE
Confidence            445555544443 22122334555555555555443221  1122233456666665433 22 3444446667777777


Q ss_pred             eCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEEC
Q 047285          360 DLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLEL  439 (552)
Q Consensus       360 ~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L  439 (552)
                      .+..+.  .......|..+.                             .++.+......+   ....+..+.+|+.+.+
T Consensus       259 ~~~~~~--~~i~~~~F~~~~-----------------------------~l~~~~~~~~~i---~~~~F~~~~~L~~i~l  304 (394)
T 4fs7_A          259 SIQNNK--LRIGGSLFYNCS-----------------------------GLKKVIYGSVIV---PEKTFYGCSSLTEVKL  304 (394)
T ss_dssp             EECCTT--CEECSCTTTTCT-----------------------------TCCEEEECSSEE---CTTTTTTCTTCCEEEE
T ss_pred             EcCCCc--ceeecccccccc-----------------------------ccceeccCceee---cccccccccccccccc
Confidence            776553  212222333333                             333333322211   1123344455555555


Q ss_pred             CCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeE
Q 047285          440 GHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLIL  519 (552)
Q Consensus       440 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~  519 (552)
                      .++ +...-..+|.++++|+.+++.++ ++..-...|.+|.+|+.+.+..+ + ..+....|.+|++|+.+++..+--  
T Consensus       305 ~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l-~~I~~~aF~~C~~L~~i~lp~~~~--  378 (394)
T 4fs7_A          305 LDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-L-RKIGANAFQGCINLKKVELPKRLE--  378 (394)
T ss_dssp             CTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-C-CEECTTTBTTCTTCCEEEEEGGGG--
T ss_pred             ccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-c-cEehHHHhhCCCCCCEEEECCCCE--
Confidence            433 22222334555555555555433 33222334555566666666544 3 334444566666666666644311  


Q ss_pred             EcCCCCcCcccccEE
Q 047285          520 KFNPNWVPPFQLETL  534 (552)
Q Consensus       520 ~~~~~~~~~~~L~~L  534 (552)
                      .+...+..|.+|+.+
T Consensus       379 ~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          379 QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             GGGGGBCTTCEEEEE
T ss_pred             EhhheecCCCCCcEE
Confidence            112234455555443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.42  E-value=9e-16  Score=138.42  Aligned_cols=127  Identities=25%  Similarity=0.273  Sum_probs=72.9

Q ss_pred             CCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCC
Q 047285          409 ALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLS  488 (552)
Q Consensus       409 ~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  488 (552)
                      +|++|++++|.+++ +| .+..+++|+.|++++|+++ .+|..+..+++|++|++++|.+++ +| .+..+++|++|+++
T Consensus        49 ~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~  123 (198)
T 1ds9_A           49 ACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMS  123 (198)
T ss_dssp             TCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEES
T ss_pred             CCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECC
Confidence            56666666666654 33 5555666666666666665 455555555666666666666653 33 35556666666666


Q ss_pred             CcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCC----------CcCcccccEEecCCCCCC
Q 047285          489 NNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPN----------WVPPFQLETLQLRSCHLG  542 (552)
Q Consensus       489 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~----------~~~~~~L~~L~l~~n~~~  542 (552)
                      +|++++..+...+..+++|++|++++|++.+.+|..          +..+++|+.||  ++.++
T Consensus       124 ~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          124 NNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             EEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             CCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            666643221124556666666666666666554432          44555666665  44444

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.40  E-value=3.7e-15  Score=134.35  Aligned_cols=62  Identities=27%  Similarity=0.330  Sum_probs=29.5

Q ss_pred             hhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCCC
Q 047285          300 GLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNS  365 (552)
Q Consensus       300 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~  365 (552)
                      .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|.. +..+++|+.|++++|.
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~-~~~~~~L~~L~L~~N~  104 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENL-DAVADTLEELWISYNQ  104 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSH-HHHHHHCSEEEEEEEE
T ss_pred             HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccch-hhcCCcCCEEECcCCc
Confidence            55555555555555555554 23 4444455555555555444 33332 3333444444444443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.39  E-value=1.1e-12  Score=114.77  Aligned_cols=109  Identities=25%  Similarity=0.251  Sum_probs=81.6

Q ss_pred             CCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCC
Q 047285          409 ALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLS  488 (552)
Q Consensus       409 ~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  488 (552)
                      ..+++++++|.++. +|..+  .++|+.|++++|++++..|..|..+++|++|++++|++++..+..+..+++|++|+|+
T Consensus        10 ~~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           10 SGTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             ETTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            35678888888774 45444  3778888888888887777778888888888888888886555567778888888888


Q ss_pred             CcccceecCHHhhhcCCCCCEEEccCCeeeEEc
Q 047285          489 NNKLNASLSEIHFVNLTKLTWFSASGNSLILKF  521 (552)
Q Consensus       489 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~  521 (552)
                      +|++++..+. .+..+++|++|+|++|++.+..
T Consensus        87 ~N~l~~~~~~-~~~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           87 DNQLKSIPRG-AFDNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             SSCCCCCCTT-TTTTCTTCCEEECCSSCBCTTB
T ss_pred             CCccCEeCHH-HhcCCCCCCEEEeCCCCCCCCc
Confidence            8888654443 6778888888888888877554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.37  E-value=2.9e-11  Score=121.20  Aligned_cols=128  Identities=15%  Similarity=0.095  Sum_probs=98.1

Q ss_pred             ccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCC
Q 047285          404 SCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLE  483 (552)
Q Consensus       404 ~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  483 (552)
                      +.++..++.+.+..+.. ......+..+..++.+......+.   ...+..+.+|+.+.+.++ ++..-...|.++.+|+
T Consensus       249 f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~  323 (394)
T 4fs7_A          249 FYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLV  323 (394)
T ss_dssp             TTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCC
T ss_pred             ccccccceeEEcCCCcc-eeeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCC
Confidence            34556788888876643 244567788899999988876543   246788999999999865 4433455688999999


Q ss_pred             eeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcccccEEecCCC
Q 047285          484 YLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSC  539 (552)
Q Consensus       484 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n  539 (552)
                      .++|..+ + ..+....|.+|.+|+.+++..+ +...-..+|..|.+|+.+++..+
T Consensus       324 ~i~lp~~-v-~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          324 SIDLPYL-V-EEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             EECCCTT-C-CEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             EEEeCCc-c-cEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence            9999755 4 5677668999999999999877 66566678999999999998654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.37  E-value=3e-12  Score=111.96  Aligned_cols=109  Identities=24%  Similarity=0.226  Sum_probs=96.1

Q ss_pred             CcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEcc
Q 047285          434 LHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSAS  513 (552)
Q Consensus       434 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~  513 (552)
                      .+.+++++|+++ .+|..+  .++|++|++++|.+++..|..+.++++|++|+|++|++++..+. .+..+++|++|+|+
T Consensus        11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~-~f~~l~~L~~L~L~   86 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAG-VFDKLTQLTQLSLN   86 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT-TTTTCTTCCEEECC
T ss_pred             CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChh-hccCCCCCCEEECC
Confidence            578999999998 577665  37999999999999988888999999999999999999765544 78999999999999


Q ss_pred             CCeeeEEcCCCCcCcccccEEecCCCCCCCCCC
Q 047285          514 GNSLILKFNPNWVPPFQLETLQLRSCHLGPHFP  546 (552)
Q Consensus       514 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~iP  546 (552)
                      +|++.+..+..+..+.+|+.|++++|++...-+
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            999997777678899999999999999986544

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.35  E-value=2.8e-12  Score=112.55  Aligned_cols=107  Identities=21%  Similarity=0.256  Sum_probs=74.2

Q ss_pred             CCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCC
Q 047285          410 LESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSN  489 (552)
Q Consensus       410 L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  489 (552)
                      -+.+++++|.++ .+|..+.  ++|+.|++++|++++..|..|..+++|++|+|++|++++..+..+..+++|++|+|++
T Consensus        14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            356777777775 3454442  6777777777777766677777777777777777777754444566777777777777


Q ss_pred             cccceecCHHhhhcCCCCCEEEccCCeeeEE
Q 047285          490 NKLNASLSEIHFVNLTKLTWFSASGNSLILK  520 (552)
Q Consensus       490 n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~  520 (552)
                      |++++ +|...+..+++|++|+|++|++.+.
T Consensus        91 N~l~~-l~~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           91 NHLKS-IPRGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             SCCCC-CCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred             Cccce-eCHHHhccccCCCEEEeCCCCcccc
Confidence            77754 3332577777777777777777644

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.34  E-value=6.2e-12  Score=110.31  Aligned_cols=107  Identities=21%  Similarity=0.201  Sum_probs=94.0

Q ss_pred             CcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEcc
Q 047285          434 LHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSAS  513 (552)
Q Consensus       434 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~  513 (552)
                      -+.+++++|+++ .+|..+.  ++|++|++++|.+++..|..+.++++|++|+|++|++++ +|...+..+++|++|+|+
T Consensus        14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~   89 (174)
T 2r9u_A           14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLN   89 (174)
T ss_dssp             SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECC
T ss_pred             CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc-cChhHhCCcchhhEEECC
Confidence            378999999997 7777664  899999999999998889999999999999999999976 444368899999999999


Q ss_pred             CCeeeEEcCCCCcCcccccEEecCCCCCCCC
Q 047285          514 GNSLILKFNPNWVPPFQLETLQLRSCHLGPH  544 (552)
Q Consensus       514 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  544 (552)
                      +|++.+..+..+..+.+|+.|++++|++...
T Consensus        90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             SSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred             CCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence            9999966655688899999999999999843

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.23  E-value=2.5e-13  Score=134.38  Aligned_cols=86  Identities=24%  Similarity=0.260  Sum_probs=47.0

Q ss_pred             CCCEEEccCCcCccc----CchhhcCCCCCcEEECCCCcccCC----CcccccCCCCCCEEeCCCCcCCcc----Ccccc
Q 047285          409 ALESLDLSICQISGH----LTNQLLQFKSLHTLELGHNSLFGP----LPPALGELSSLKKLDLSNNMLNGF----IPLSL  476 (552)
Q Consensus       409 ~L~~L~ls~n~~~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~~  476 (552)
                      +|++|++++|.++..    ++..+...++|++|+|++|++++.    ++..+...++|++|+|++|.+++.    ++..+
T Consensus       156 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L  235 (372)
T 3un9_A          156 QITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAA  235 (372)
T ss_dssp             CCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHH
T ss_pred             ccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHH
Confidence            566666666666532    223335556666666666666532    233445555666666666666532    22333


Q ss_pred             cCCCCCCeeeCCCcccce
Q 047285          477 GKLSHLEYLDLSNNKLNA  494 (552)
Q Consensus       477 ~~l~~L~~L~L~~n~l~~  494 (552)
                      ...++|++|+|++|.+++
T Consensus       236 ~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          236 REHPSLELLHLYFNELSS  253 (372)
T ss_dssp             HHCSSCCEEECTTSSCCH
T ss_pred             HhCCCCCEEeccCCCCCH
Confidence            345566666666666644

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.21  E-value=9.7e-13  Score=130.20  Aligned_cols=186  Identities=16%  Similarity=0.113  Sum_probs=126.1

Q ss_pred             CCCCCEEEccCccceeecCcc---ccC-CCCccCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCcccccccc
Q 047285          328 FNDLEFLSVAWNSLQGTISSV---GLE-NLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFS  403 (552)
Q Consensus       328 l~~L~~L~l~~n~l~~~~~~~---~l~-~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~  403 (552)
                      .++|+.|++++|.++......   .+. ..++|++|++++|. ++......+..                          
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~--------------------------  123 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLP--------------------------  123 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHTHH--------------------------
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHHHH--------------------------
Confidence            367889999999887432211   122 33789999999997 65433322221                          


Q ss_pred             ccCCCCCCEEEccCCcCcccCchhh-----cCCCCCcEEECCCCcccC----CCcccccCCCCCCEEeCCCCcCCcc---
Q 047285          404 SCGAYALESLDLSICQISGHLTNQL-----LQFKSLHTLELGHNSLFG----PLPPALGELSSLKKLDLSNNMLNGF---  471 (552)
Q Consensus       404 ~~~~~~L~~L~ls~n~~~~~~~~~l-----~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~---  471 (552)
                        .+.+|++|++++|.++......+     ...++|++|+|++|.+++    .++..+..+++|++|+|++|.+++.   
T Consensus       124 --~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~  201 (372)
T 3un9_A          124 --VFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLE  201 (372)
T ss_dssp             --HHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHH
T ss_pred             --HHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHH
Confidence              11268999999999986554444     246889999999999874    2445567889999999999998753   


Q ss_pred             -CcccccCCCCCCeeeCCCccccee----cCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCc---c--cccEEe--cCCC
Q 047285          472 -IPLSLGKLSHLEYLDLSNNKLNAS----LSEIHFVNLTKLTWFSASGNSLILKFNPNWVPP---F--QLETLQ--LRSC  539 (552)
Q Consensus       472 -~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~---~--~L~~L~--l~~n  539 (552)
                       ++..+...++|++|+|++|.+++.    +.. .+...++|++|+|++|++.......+...   .  .|+.+.  +.++
T Consensus       202 ~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~-~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~  280 (372)
T 3un9_A          202 LLAAQLDRNRQLQELNVAYNGAGDTAALALAR-AAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGT  280 (372)
T ss_dssp             HHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH-HHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC---
T ss_pred             HHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH-HHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCC
Confidence             355667788999999999999653    233 45678999999999999875533322221   1  266776  6666


Q ss_pred             CCCC
Q 047285          540 HLGP  543 (552)
Q Consensus       540 ~~~~  543 (552)
                      .++.
T Consensus       281 ~~~~  284 (372)
T 3un9_A          281 AVSE  284 (372)
T ss_dssp             -CHH
T ss_pred             ccCH
Confidence            6653

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.15  E-value=3.1e-09  Score=106.35  Aligned_cols=320  Identities=11%  Similarity=0.088  Sum_probs=194.8

Q ss_pred             cCCCC-CCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCC---CCCCCCCcccCCCCCceeecCCCCCCCCCccccc
Q 047285          200 LSGLY-MLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQ---LCHFPPLLSANFSSLKALHLAINNFDNSLFQYGS  275 (552)
Q Consensus       200 l~~l~-~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~---~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~  275 (552)
                      |.+++ .|+.+.+..+ ++.+  -...+.+|++|+.+.+..+.   ++......|..+.+|+.+.+..+ ++.....   
T Consensus        59 F~~~~~~L~sI~iP~s-vt~I--g~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~---  131 (394)
T 4gt6_A           59 FCNYKYVLTSVQIPDT-VTEI--GSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSE---  131 (394)
T ss_dssp             TTTCCSCCCEEEECTT-CCEE--CTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTT---
T ss_pred             ccCCCCcCEEEEECCC-eeEE--hHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhh---
Confidence            56664 5888888754 3321  13456789999999987653   56666778888888888776543 2222222   


Q ss_pred             cccCCCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCc
Q 047285          276 WVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTS  355 (552)
Q Consensus       276 ~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~  355 (552)
                      .+..+.+|+.+.+..+ +.......+..+..|+.+.+..+ ++......|.. .+|+.+.+..+-.  .+....+..+.+
T Consensus       132 aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~--~i~~~af~~c~~  206 (394)
T 4gt6_A          132 AFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVT--RIGTNAFSECFA  206 (394)
T ss_dssp             TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCC--EECTTTTTTCTT
T ss_pred             hhhhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCccc--ccccchhhhccc
Confidence            5667888998888754 23233456778888888888664 33333344543 5788888765432  344445777888


Q ss_pred             cCEEeCCCCCCCCCCCchhHhhcccC-ceeeccccc------CC-CCCccccccccccCCCCCCEEEccCCcCcccCchh
Q 047285          356 IETLDLSGNSKLGGKIPTSFARLCKL-TSVDLSLID------LS-QDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQ  427 (552)
Q Consensus       356 L~~L~l~~n~~l~~~~~~~~~~l~~L-~~l~l~~~~------~~-~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~  427 (552)
                      ++........ .. .+...+...... .........      .. ......+....+.++..|+.+.+.++.. ......
T Consensus       207 l~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~-~I~~~a  283 (394)
T 4gt6_A          207 LSTITSDSES-YP-AIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVV-SIGTGA  283 (394)
T ss_dssp             CCEEEECCSS-SC-BSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCC-EECTTT
T ss_pred             cceecccccc-cc-cccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccc-eecCcc
Confidence            8877765543 21 111111110000 000000000      00 0122223344566778899998876533 344567


Q ss_pred             hcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCC
Q 047285          428 LLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKL  507 (552)
Q Consensus       428 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L  507 (552)
                      |.++++|+.+.+.. .++.....+|.++.+|+.+++..+ ++..-...|.+|.+|+.+.|..+ + ..+....|.+|++|
T Consensus       284 F~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v-~~I~~~aF~~C~~L  359 (394)
T 4gt6_A          284 FMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-V-TKIPESAFSNCTAL  359 (394)
T ss_dssp             TTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-C-CBCCGGGGTTCTTC
T ss_pred             cccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-c-CEEhHhHhhCCCCC
Confidence            78899999999974 454344567889999999999865 44333556888999999999765 4 56777789999999


Q ss_pred             CEEEccCCeeeEEcCCCCcCcccccEEecCCCCC
Q 047285          508 TWFSASGNSLILKFNPNWVPPFQLETLQLRSCHL  541 (552)
Q Consensus       508 ~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~  541 (552)
                      +.+++.++....   ..+..+.+|+.+.+..+.+
T Consensus       360 ~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          360 NNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             CEEEESSCHHHH---HTCBCCCCC----------
T ss_pred             CEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence            999999876542   3566777888888876654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.11  E-value=1.3e-10  Score=114.37  Aligned_cols=86  Identities=27%  Similarity=0.213  Sum_probs=41.3

Q ss_pred             CCCCCEEEccC-CcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCee
Q 047285          407 AYALESLDLSI-CQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYL  485 (552)
Q Consensus       407 ~~~L~~L~ls~-n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  485 (552)
                      +.+|++|+|++ |.+++..+..|..+++|+.|+|++|++++..|..|.++++|+.|+|++|++++..+..+..++ |+.|
T Consensus        30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l  108 (347)
T 2ifg_A           30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQEL  108 (347)
T ss_dssp             CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEE
T ss_pred             CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEE
Confidence            33455555553 555544444455555555555555555544444455555555555555555432222333332 5555


Q ss_pred             eCCCcccc
Q 047285          486 DLSNNKLN  493 (552)
Q Consensus       486 ~L~~n~l~  493 (552)
                      +|.+|++.
T Consensus       109 ~l~~N~~~  116 (347)
T 2ifg_A          109 VLSGNPLH  116 (347)
T ss_dssp             ECCSSCCC
T ss_pred             EeeCCCcc
Confidence            55555544

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.11  E-value=1.1e-08  Score=102.24  Aligned_cols=105  Identities=12%  Similarity=0.204  Sum_probs=60.5

Q ss_pred             CCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCee
Q 047285          406 GAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYL  485 (552)
Q Consensus       406 ~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  485 (552)
                      ++..|+.+.+. +.++......|.++.+|+.++|..+ ++..-..+|.++++|+.+.+..+ ++..-...|.+|++|+.+
T Consensus       286 ~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i  362 (394)
T 4gt6_A          286 NCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNI  362 (394)
T ss_dssp             TCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEE
T ss_pred             cccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEE
Confidence            44566666664 3344444556777788888888654 44333456778888888888654 442334567788888888


Q ss_pred             eCCCcccceecCHHhhhcCCCCCEEEccCCee
Q 047285          486 DLSNNKLNASLSEIHFVNLTKLTWFSASGNSL  517 (552)
Q Consensus       486 ~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~  517 (552)
                      ++.++....   . .+..+..|+.+.+..+.+
T Consensus       363 ~~~~~~~~~---~-~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          363 EYSGSRSQW---N-AISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             EESSCHHHH---H-TCBCCCCC----------
T ss_pred             EECCceeeh---h-hhhccCCCCEEEeCCCCE
Confidence            888775421   2 466677788777765544

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.08  E-value=3.3e-10  Score=111.47  Aligned_cols=108  Identities=22%  Similarity=0.177  Sum_probs=92.5

Q ss_pred             CEEEccCC-cCcccCchhhcCCCCCcEEECCC-CcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCC
Q 047285          411 ESLDLSIC-QISGHLTNQLLQFKSLHTLELGH-NSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLS  488 (552)
Q Consensus       411 ~~L~ls~n-~~~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  488 (552)
                      ..++.+++ .+++ +|. +..+++|+.|+|++ |++.+..+..|..+++|+.|+|++|.+++..|..|.++++|+.|+|+
T Consensus        11 ~~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            45788888 8875 677 99999999999996 99997777889999999999999999998888889999999999999


Q ss_pred             CcccceecCHHhhhcCCCCCEEEccCCeeeEEcC
Q 047285          489 NNKLNASLSEIHFVNLTKLTWFSASGNSLILKFN  522 (552)
Q Consensus       489 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~  522 (552)
                      +|++++..+. .+..++ |++|+|.+|++.+.+.
T Consensus        89 ~N~l~~~~~~-~~~~~~-L~~l~l~~N~~~c~c~  120 (347)
T 2ifg_A           89 FNALESLSWK-TVQGLS-LQELVLSGNPLHCSCA  120 (347)
T ss_dssp             SSCCSCCCST-TTCSCC-CCEEECCSSCCCCCGG
T ss_pred             CCccceeCHH-HcccCC-ceEEEeeCCCccCCCc
Confidence            9999764444 566665 9999999999987654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.94  E-value=4.9e-10  Score=109.81  Aligned_cols=83  Identities=18%  Similarity=0.281  Sum_probs=42.7

Q ss_pred             CCCCcEEECCCCcccCCCcccc---cCCCCCCEEeCCCCcCCcc----CcccccCCCCCCeeeCCCcccceecCHHhhhc
Q 047285          431 FKSLHTLELGHNSLFGPLPPAL---GELSSLKKLDLSNNMLNGF----IPLSLGKLSHLEYLDLSNNKLNASLSEIHFVN  503 (552)
Q Consensus       431 l~~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  503 (552)
                      +++|+.|++.+|.+.+..+..+   ..+++|++|+|+.|.+.+.    ++..+..+++|+.|++++|.+++.... .+..
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~-~l~~  329 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKK-ELQK  329 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHH-HHHH
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHH-HHHH
Confidence            4555555555555443222222   1355666666666666542    233334456777777777766544332 2332


Q ss_pred             -CCCCCEEEccCCe
Q 047285          504 -LTKLTWFSASGNS  516 (552)
Q Consensus       504 -l~~L~~L~L~~n~  516 (552)
                       +  ..+++++.++
T Consensus       330 al--g~~~~~~~~~  341 (362)
T 2ra8_A          330 SL--PMKIDVSDSQ  341 (362)
T ss_dssp             HC--CSEEECCSBC
T ss_pred             Hc--CCEEEecCCc
Confidence             2  3456776665

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.79  E-value=1.6e-09  Score=106.14  Aligned_cols=83  Identities=19%  Similarity=0.244  Sum_probs=47.2

Q ss_pred             CCCCCEEEccCCcCcccCchhhc---CCCCCcEEECCCCcccCC----CcccccCCCCCCEEeCCCCcCCccCcccccC-
Q 047285          407 AYALESLDLSICQISGHLTNQLL---QFKSLHTLELGHNSLFGP----LPPALGELSSLKKLDLSNNMLNGFIPLSLGK-  478 (552)
Q Consensus       407 ~~~L~~L~ls~n~~~~~~~~~l~---~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-  478 (552)
                      +++|++|++++|.+.+..+..+.   .+++|+.|+|+.|.+.+.    ++..+..+++|+.|++++|.+++.....+.. 
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a  330 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS  330 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence            45677777777766543332222   356777777777776642    2333345677777777777766443333322 


Q ss_pred             CCCCCeeeCCCcc
Q 047285          479 LSHLEYLDLSNNK  491 (552)
Q Consensus       479 l~~L~~L~L~~n~  491 (552)
                      +  ...++++.++
T Consensus       331 l--g~~~~~~~~~  341 (362)
T 2ra8_A          331 L--PMKIDVSDSQ  341 (362)
T ss_dssp             C--CSEEECCSBC
T ss_pred             c--CCEEEecCCc
Confidence            2  3456666665

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.78  E-value=9.1e-07  Score=87.87  Aligned_cols=108  Identities=18%  Similarity=0.149  Sum_probs=62.1

Q ss_pred             ccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCC
Q 047285          404 SCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLE  483 (552)
Q Consensus       404 ~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  483 (552)
                      +.++..|+.+.+..+ ++......+.++.+|+.+.+..+ +.......|.++++|+.+.+.++.++..-...|.++.+|+
T Consensus       236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~  313 (379)
T 4h09_A          236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLS  313 (379)
T ss_dssp             TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCC
T ss_pred             ccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCC
Confidence            334456666666543 44334445566666777666543 3323334566667777777766666533345566667777


Q ss_pred             eeeCCCcccceecCHHhhhcCCCCCEEEccCC
Q 047285          484 YLDLSNNKLNASLSEIHFVNLTKLTWFSASGN  515 (552)
Q Consensus       484 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n  515 (552)
                      .+.|..+ + ..+....|.+|++|+.+.+..+
T Consensus       314 ~i~lp~~-l-~~I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          314 SVTLPTA-L-KTIQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             EEECCTT-C-CEECTTTTTTCTTCCCCCCCTT
T ss_pred             EEEcCcc-c-cEEHHHHhhCCCCCCEEEECCc
Confidence            7777543 3 3455556677777776666543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.71  E-value=3e-06  Score=84.07  Aligned_cols=315  Identities=10%  Similarity=0.097  Sum_probs=140.2

Q ss_pred             ccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccC
Q 047285          122 LVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLS  201 (552)
Q Consensus       122 l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~  201 (552)
                      +....+|+.+.+... ++.+ -...|.+|.+|+.+++..+ ++..-...|.++ +|+.+.+..+ +..++..     .+.
T Consensus        42 ~~~~~~i~~v~ip~~-vt~I-g~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~-----aF~  111 (379)
T 4h09_A           42 YKDRDRISEVRVNSG-ITSI-GEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDY-----VFQ  111 (379)
T ss_dssp             GGGGGGCSEEEECTT-EEEE-CTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTT-----TTT
T ss_pred             cccccCCEEEEeCCC-ccCh-HHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccc-----eec
Confidence            344556777777543 4421 2345777788888887643 443333455555 5666665432 2222211     122


Q ss_pred             CCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCC
Q 047285          202 GLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLR  281 (552)
Q Consensus       202 ~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~  281 (552)
                      . .+|+.+.+..+...-   -...+.+ ..|+.+.+..+ +.......+..+..++...+...........   ...   
T Consensus       112 ~-~~L~~i~lp~~~~~i---~~~~F~~-~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~---~~~---  179 (379)
T 4h09_A          112 G-TDLDDFEFPGATTEI---GNYIFYN-SSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAEN---YVL---  179 (379)
T ss_dssp             T-CCCSEEECCTTCCEE---CTTTTTT-CCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEET---TEE---
T ss_pred             c-CCcccccCCCccccc---ccccccc-ceeeeeeccce-eeccccchhcccccccccccccccceeeccc---cee---
Confidence            2 356676665442110   0111122 24555444332 3333344455555565555543322111000   000   


Q ss_pred             CccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeC
Q 047285          282 NLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDL  361 (552)
Q Consensus       282 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l  361 (552)
                              .+ ........+.....+..+.+.... .......+..+.+|+.+.+..+ +. .+....+..+..|+.+.+
T Consensus       180 --------~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~-~i~~~~f~~~~~L~~i~l  247 (379)
T 4h09_A          180 --------YN-KNKTILESYPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VT-TLGDGAFYGMKALDEIAI  247 (379)
T ss_dssp             --------EE-TTSSEEEECCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CC-EECTTTTTTCSSCCEEEE
T ss_pred             --------cc-cccceeccccccccccccccccce-eEEeecccccccccceeeeccc-ee-EEccccccCCccceEEEc
Confidence                    00 000111122223334444433221 1122334455566666666543 22 344444666777777776


Q ss_pred             CCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCC
Q 047285          362 SGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGH  441 (552)
Q Consensus       362 ~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~  441 (552)
                      ..+  ++......|..+.                             +|+.+.+..+ +.......|.++++|+.+.+.+
T Consensus       248 p~~--v~~I~~~aF~~~~-----------------------------~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~  295 (379)
T 4h09_A          248 PKN--VTSIGSFLLQNCT-----------------------------ALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDN  295 (379)
T ss_dssp             CTT--CCEECTTTTTTCT-----------------------------TCCEEEECCC-CSEECTTTTTTCTTCCEEEECC
T ss_pred             CCC--ccEeCccccceee-----------------------------hhcccccccc-ceeccccccccccccccccccc
Confidence            554  3322233333333                             3444444322 2222233445555555555555


Q ss_pred             CcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCC
Q 047285          442 NSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLT  505 (552)
Q Consensus       442 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~  505 (552)
                      +.++..-..+|.++.+|+.+.+..+ ++..-...|.+|.+|+.+.+..+ + ..+....|.++.
T Consensus       296 ~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v-~~I~~~aF~~c~  356 (379)
T 4h09_A          296 SAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-I-TLIESGAFEGSS  356 (379)
T ss_dssp             TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-C-CEECTTTTTTSS
T ss_pred             cccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-c-CEEchhHhhCCC
Confidence            5554333345555666666666443 32222334556666666666543 3 334443555553

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.52  E-value=3.4e-08  Score=87.22  Aligned_cols=112  Identities=18%  Similarity=0.166  Sum_probs=73.8

Q ss_pred             CCCCCCEEEccCC-cCccc----CchhhcCCCCCcEEECCCCcccCC----CcccccCCCCCCEEeCCCCcCCcc----C
Q 047285          406 GAYALESLDLSIC-QISGH----LTNQLLQFKSLHTLELGHNSLFGP----LPPALGELSSLKKLDLSNNMLNGF----I  472 (552)
Q Consensus       406 ~~~~L~~L~ls~n-~~~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~  472 (552)
                      ..+.|++|++++| .+...    +...+...++|++|+|++|++.+.    +...+...++|++|+|++|.+.+.    +
T Consensus        34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l  113 (185)
T 1io0_A           34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL  113 (185)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence            3457888888888 77643    334455667788888888887642    334445557788888888877643    3


Q ss_pred             cccccCCCCCCeeeC--CCccccee----cCHHhhhcCCCCCEEEccCCeee
Q 047285          473 PLSLGKLSHLEYLDL--SNNKLNAS----LSEIHFVNLTKLTWFSASGNSLI  518 (552)
Q Consensus       473 ~~~~~~l~~L~~L~L--~~n~l~~~----~~~~~~~~l~~L~~L~L~~n~~~  518 (552)
                      ...+...++|++|+|  ++|.+...    +.+ .+...+.|++|+|++|.+.
T Consensus       114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~-~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIAN-MLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH-HHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHhCCCceEEEecCCCCCCCHHHHHHHHH-HHHhCCCcCEEeccCCCCC
Confidence            455566677888888  77777543    222 4555677777777777664

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.46  E-value=1.9e-08  Score=88.90  Aligned_cols=118  Identities=18%  Similarity=0.106  Sum_probs=92.2

Q ss_pred             CchhhcCCCCCcEEECCCC-cccCC----CcccccCCCCCCEEeCCCCcCCcc----CcccccCCCCCCeeeCCCcccce
Q 047285          424 LTNQLLQFKSLHTLELGHN-SLFGP----LPPALGELSSLKKLDLSNNMLNGF----IPLSLGKLSHLEYLDLSNNKLNA  494 (552)
Q Consensus       424 ~~~~l~~l~~L~~L~L~~n-~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~  494 (552)
                      +...+...++|++|+|++| .+...    +...+...++|++|+|++|.+.+.    +...+...++|++|+|++|.+.+
T Consensus        28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~  107 (185)
T 1io0_A           28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG  107 (185)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred             HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence            4456677899999999999 88742    445567789999999999999753    34455667899999999999965


Q ss_pred             e----cCHHhhhcCCCCCEEEc--cCCeeeEEc----CCCCcCcccccEEecCCCCCC
Q 047285          495 S----LSEIHFVNLTKLTWFSA--SGNSLILKF----NPNWVPPFQLETLQLRSCHLG  542 (552)
Q Consensus       495 ~----~~~~~~~~l~~L~~L~L--~~n~~~~~~----~~~~~~~~~L~~L~l~~n~~~  542 (552)
                      .    +.. .+...+.|++|+|  ++|.+....    ...+....+|+.|++++|.+.
T Consensus       108 ~g~~~l~~-~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          108 SGILALVE-ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHHH-GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHH-HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            4    333 5777899999999  889988553    233445578999999999875

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.35  E-value=2.1e-07  Score=86.35  Aligned_cols=81  Identities=27%  Similarity=0.330  Sum_probs=56.3

Q ss_pred             cCCCCCcEEECCCCcccC--CCcccccCCCCCCEEeCCCCcCCccCcccccCCC--CCCeeeCCCcccceecCH------
Q 047285          429 LQFKSLHTLELGHNSLFG--PLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLS--HLEYLDLSNNKLNASLSE------  498 (552)
Q Consensus       429 ~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~------  498 (552)
                      .++++|+.|+|++|++++  .+|..+..+++|+.|+|++|.+.+.  ..+..+.  +|++|+|++|++.+.+|.      
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            457788888888888875  4455666788888888888887753  2233333  788888888888776552      


Q ss_pred             HhhhcCCCCCEEE
Q 047285          499 IHFVNLTKLTWFS  511 (552)
Q Consensus       499 ~~~~~l~~L~~L~  511 (552)
                      ..+..+++|+.||
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence            2466778888776

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.24  E-value=2.4e-07  Score=85.90  Aligned_cols=79  Identities=24%  Similarity=0.230  Sum_probs=64.8

Q ss_pred             CCCCCCEEEccCCcCcc--cCchhhcCCCCCcEEECCCCcccCCCcccccCCC--CCCEEeCCCCcCCccCcc-------
Q 047285          406 GAYALESLDLSICQISG--HLTNQLLQFKSLHTLELGHNSLFGPLPPALGELS--SLKKLDLSNNMLNGFIPL-------  474 (552)
Q Consensus       406 ~~~~L~~L~ls~n~~~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~--~L~~L~L~~n~l~~~~~~-------  474 (552)
                      .+++|+.|+|++|.+++  .++..+..+++|+.|+|++|++.+.  ..+..+.  +|++|+|++|++.+.+|.       
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence            45689999999999998  4557778899999999999999854  3344444  999999999999877763       


Q ss_pred             cccCCCCCCeee
Q 047285          475 SLGKLSHLEYLD  486 (552)
Q Consensus       475 ~~~~l~~L~~L~  486 (552)
                      .+..+|+|+.||
T Consensus       246 il~~~P~L~~LD  257 (267)
T 3rw6_A          246 IRERFPKLLRLD  257 (267)
T ss_dssp             HHHHCTTCCEES
T ss_pred             HHHHCcccCeEC
Confidence            366789999886

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.15  E-value=3.8e-07  Score=78.35  Aligned_cols=83  Identities=14%  Similarity=0.161  Sum_probs=59.2

Q ss_pred             CCCEEEccCCcCcccCchhhcCCCCCcEEECCCCc-ccCCCcccccCC----CCCCEEeCCCCc-CCccCcccccCCCCC
Q 047285          409 ALESLDLSICQISGHLTNQLLQFKSLHTLELGHNS-LFGPLPPALGEL----SSLKKLDLSNNM-LNGFIPLSLGKLSHL  482 (552)
Q Consensus       409 ~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l----~~L~~L~L~~n~-l~~~~~~~~~~l~~L  482 (552)
                      .|+.||+++|.++..-...+..+++|+.|+|++|. +++.--..+..+    ++|++|++++|. +++.--..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            68888888888877666677788888888888885 665444445553    368888888875 665444455667888


Q ss_pred             CeeeCCCcc
Q 047285          483 EYLDLSNNK  491 (552)
Q Consensus       483 ~~L~L~~n~  491 (552)
                      ++|+|++|+
T Consensus       142 ~~L~L~~c~  150 (176)
T 3e4g_A          142 KYLFLSDLP  150 (176)
T ss_dssp             CEEEEESCT
T ss_pred             CEEECCCCC
Confidence            888888875

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.14  E-value=4.1e-07  Score=78.15  Aligned_cols=85  Identities=8%  Similarity=0.066  Sum_probs=64.6

Q ss_pred             CCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCc-CCccCcccccCC----CCCCeeeCCCcc-cceecCHHhhhcC
Q 047285          431 FKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNM-LNGFIPLSLGKL----SHLEYLDLSNNK-LNASLSEIHFVNL  504 (552)
Q Consensus       431 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l----~~L~~L~L~~n~-l~~~~~~~~~~~l  504 (552)
                      -.+|+.||+++|.+++.-...+..+++|++|+|++|. +++.--..+..+    ++|++|+|++|. +++.--. .+..+
T Consensus        60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~-~L~~~  138 (176)
T 3e4g_A           60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII-ALHHF  138 (176)
T ss_dssp             CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH-HGGGC
T ss_pred             CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH-HHhcC
Confidence            3479999999999887666677889999999999985 665444445543    479999999985 6655444 56788


Q ss_pred             CCCCEEEccCCe
Q 047285          505 TKLTWFSASGNS  516 (552)
Q Consensus       505 ~~L~~L~L~~n~  516 (552)
                      ++|++|++++|+
T Consensus       139 ~~L~~L~L~~c~  150 (176)
T 3e4g_A          139 RNLKYLFLSDLP  150 (176)
T ss_dssp             TTCCEEEEESCT
T ss_pred             CCCCEEECCCCC
Confidence            889999998886

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.38  E-value=0.00012  Score=64.05  Aligned_cols=110  Identities=15%  Similarity=0.142  Sum_probs=75.4

Q ss_pred             CCCCCEEEccCC-cCccc----CchhhcCCCCCcEEECCCCcccCC----CcccccCCCCCCEEeCCCCcCCcc----Cc
Q 047285          407 AYALESLDLSIC-QISGH----LTNQLLQFKSLHTLELGHNSLFGP----LPPALGELSSLKKLDLSNNMLNGF----IP  473 (552)
Q Consensus       407 ~~~L~~L~ls~n-~~~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~  473 (552)
                      -+.|++|+|++| .+...    +.+.+..-+.|+.|+|++|++.+.    +.+.+..-+.|++|+|++|.+.+.    +.
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala  119 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL  119 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence            347889999885 77542    345566678899999999988743    344455567899999999988643    33


Q ss_pred             ccccCCCCCCeeeCCCc---cccee----cCHHhhhcCCCCCEEEccCCee
Q 047285          474 LSLGKLSHLEYLDLSNN---KLNAS----LSEIHFVNLTKLTWFSASGNSL  517 (552)
Q Consensus       474 ~~~~~l~~L~~L~L~~n---~l~~~----~~~~~~~~l~~L~~L~L~~n~~  517 (552)
                      +.+..-+.|++|+|++|   .+...    +.+ .+..-+.|++|+++.|.+
T Consensus       120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~-aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMM-AIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHH-HHHHCSSCCEEECCCCCH
T ss_pred             HHHhhCCceeEEECCCCcCcCcCHHHHHHHHH-HHHhCCCcCeEeccCCCc
Confidence            45556677889998765   33321    333 566778888888877654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.87  E-value=0.00014  Score=63.62  Aligned_cols=115  Identities=13%  Similarity=0.081  Sum_probs=82.3

Q ss_pred             hhhcCCCCCcEEECCCC-cccC----CCcccccCCCCCCEEeCCCCcCCcc----CcccccCCCCCCeeeCCCccccee-
Q 047285          426 NQLLQFKSLHTLELGHN-SLFG----PLPPALGELSSLKKLDLSNNMLNGF----IPLSLGKLSHLEYLDLSNNKLNAS-  495 (552)
Q Consensus       426 ~~l~~l~~L~~L~L~~n-~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~-  495 (552)
                      ..+.+-+.|+.|+|++| ++.+    .+-+.+..-+.|+.|+|++|.+.+.    +.+.+..-+.|++|+|+.|.+.+. 
T Consensus        35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G  114 (197)
T 1pgv_A           35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL  114 (197)
T ss_dssp             HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred             HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence            34456788999999986 7753    2445667778999999999999754    344455668999999999999654 


Q ss_pred             ---cCHHhhhcCCCCCEEEccCC---eeeEE----cCCCCcCcccccEEecCCCCC
Q 047285          496 ---LSEIHFVNLTKLTWFSASGN---SLILK----FNPNWVPPFQLETLQLRSCHL  541 (552)
Q Consensus       496 ---~~~~~~~~l~~L~~L~L~~n---~~~~~----~~~~~~~~~~L~~L~l~~n~~  541 (552)
                         +.+ .+..-+.|++|+|++|   .+...    +...+..-..|+.|+++.|.+
T Consensus       115 a~ala~-aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          115 LARLLR-STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHH-HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHH-HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence               223 5666788999999865   33322    223334446899999987754

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.33  E-value=0.005  Score=50.09  Aligned_cols=58  Identities=26%  Similarity=0.322  Sum_probs=42.2

Q ss_pred             cEEECCCCccc-CCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccce
Q 047285          435 HTLELGHNSLF-GPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNA  494 (552)
Q Consensus       435 ~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  494 (552)
                      ..++.++++++ ..+|..+  .++|++|+|++|.++..-+..|..+++|++|+|++|++.-
T Consensus        11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C   69 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC   69 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred             CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence            36788888776 3555443  2368888998888885555567788888888888887754

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.93  E-value=0.015  Score=47.28  Aligned_cols=57  Identities=21%  Similarity=0.197  Sum_probs=42.5

Q ss_pred             CEEEccCCcCc-ccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCC
Q 047285          411 ESLDLSICQIS-GHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLN  469 (552)
Q Consensus       411 ~~L~ls~n~~~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  469 (552)
                      ..++.+++.++ ..+|..+  .++|+.|+|++|+|+...+..|..+++|++|+|++|++.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            47788888776 3455433  346889999999988655666788888999999988874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	552
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-23
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-12
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	9e-16
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-12
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-09
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-08
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	8e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.003
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-09
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	7e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	9e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	5e-07
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	7e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	8e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	5e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	9e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	6e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.004
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	8e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.004
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	9e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.003
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	8e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.003
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.001
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.002
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	4e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.003
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.002
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.003

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 98.5 bits (244), Expect = 6e-23
 Identities = 66/374 (17%), Positives = 124/374 (33%), Gaps = 31/374 (8%)

Query: 120 PSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQY 179
            S  DL  +  L        GI+    +  L NL  +N S  +   + PL   NL+ L  
Sbjct: 38  VSQTDLDQVTTLQADRL---GIKSIDGVEYLNNLTQINFSNNQLTDITPL--KNLTKLVD 92

Query: 180 LDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVT--NSLPSLKVLKL 237
           + ++   +++     +  +          +       +  +   L    N++  +  L  
Sbjct: 93  ILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSG 152

Query: 238 TKCQLCHFPPLLSANFSSLKAL-HLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQ 296
                         +   L  L  L   +  ++     S +  L NL  +  ++NQ    
Sbjct: 153 LTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDI 212

Query: 297 IPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSI 356
            P+    LT+L  L L  N       G L+   +L  L +A N +        L  LT +
Sbjct: 213 TPL--GILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAP---LSGLTKL 265

Query: 357 ETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLS 416
             L L   +++    P +                   + +Q+ D         L  L L 
Sbjct: 266 TELKLG-ANQISNISPLAGLTALTNLE---------LNENQLEDISPISNLKNLTYLTLY 315

Query: 417 ICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSL 476
              IS    + +     L  L   +N +      +L  L+++  L   +N ++   P  L
Sbjct: 316 FNNISD--ISPVSSLTKLQRLFFANNKVSDV--SSLANLTNINWLSAGHNQISDLTP--L 369

Query: 477 GKLSHLEYLDLSNN 490
             L+ +  L L++ 
Sbjct: 370 ANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 65.8 bits (159), Expect = 4e-12
 Identities = 75/394 (19%), Positives = 127/394 (32%), Gaps = 50/394 (12%)

Query: 124 DLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLS 183
            L   +   L   +         L  +  L+   L      G     +  L+NL  ++ S
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFS 74

Query: 184 GTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLC 243
              L+        ++ L  L  L  + ++   ++  +    +TN                
Sbjct: 75  NNQLT-------DITPLKNLTKLVDILMNNNQIADITPLANLTN----------LTGLTL 117

Query: 244 HFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRN 303
               +   +          +    N++    +                  Q      L N
Sbjct: 118 FNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLS----FGNQVTDLKPLAN 173

Query: 304 LTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSG 363
           LT+L  LD+  N  +      L+K  +LE L    N +        L NL   + L L+G
Sbjct: 174 LTTLERLDISSNKVS--DISVLAKLTNLESLIATNNQISDITPLGILTNL---DELSLNG 228

Query: 364 NSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGH 423
           N         + A L  LT +DL+   +S       +     G   L  L L   QIS  
Sbjct: 229 NQLKD---IGTLASLTNLTDLDLANNQIS-------NLAPLSGLTKLTELKLGANQISNI 278

Query: 424 LTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLE 483
                L   +        N         +  L +L  L L  N ++   P+    L+ L+
Sbjct: 279 SPLAGLTALTNLE----LNENQLEDISPISNLKNLTYLTLYFNNISDISPV--SSLTKLQ 332

Query: 484 YLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSL 517
            L  +NNK++  +S +   NLT + W SA  N +
Sbjct: 333 RLFFANNKVS-DVSSLA--NLTNINWLSAGHNQI 363

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 47.7 bits (112), Expect = 2e-06
 Identities = 32/160 (20%), Positives = 61/160 (38%), Gaps = 12/160 (7%)

Query: 53  IDPSNRLASWNTGDGDCCKWAGVFCSNITGHVLQLSLQNPFSYLGGDLREVKAGSNYERS 112
           I     L +    D    + + +   +    + +L L          L  + A +N E +
Sbjct: 234 IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELN 293

Query: 113 KLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLG 172
           +   +    + +LK+L +L L  N+   I     + SL  L+ L  +  K +      L 
Sbjct: 294 ENQLEDISPISNLKNLTYLTLYFNNISDIS---PVSSLTKLQRLFFANNKVSD--VSSLA 348

Query: 173 NLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLS 212
           NL+N+ +L      +S        L+ L+ L  +  L L+
Sbjct: 349 NLTNINWLSAGHNQIS-------DLTPLANLTRITQLGLN 381

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 4e-04
 Identities = 18/120 (15%), Positives = 35/120 (29%), Gaps = 7/120 (5%)

Query: 431 FKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNN 490
                   LG  ++   +     +L  +  L      +       +  L++L  ++ SNN
Sbjct: 21  LAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNN 76

Query: 491 KLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLGPHFPSWLH 550
           +L          NLTKL     + N +        +      TL            +  +
Sbjct: 77  QLT---DITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 133

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 75.9 bits (185), Expect = 9e-16
 Identities = 74/344 (21%), Positives = 117/344 (34%), Gaps = 51/344 (14%)

Query: 37  CIDSEREALLKLKQDLIDPSNRLASWNTGDGDCC--KWAGVFCSNITG--HVLQLSLQN- 91
           C   +++ALL++K+DL +P+  L+SW     DCC   W GV C   T    V  L L   
Sbjct: 3   CNPQDKQALLQIKKDLGNPTT-LSSWLPT-TDCCNRTWLGVLCDTDTQTYRVNNLDLSGL 60

Query: 92  ------PFSYLGGDLREVKAGSNYERSKLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPK 145
                 P      +L  +        + L G + P++  L  L +L ++  +  G     
Sbjct: 61  NLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF 120

Query: 146 YLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYM 205
                + L  L+ S    +G +P  + +L NL  +   G  +S                M
Sbjct: 121 LSQI-KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSM 179

Query: 206 LEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINN 265
               +     +      L +     S  +L+     L                    I+ 
Sbjct: 180 TISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN-----------TQKIHL 228

Query: 266 FDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWL 325
             NSL      V   +NL  +DL +N+  G +P GL  L  L  L++ F           
Sbjct: 229 AKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF----------- 277

Query: 326 SKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGG 369
                        N+L G I   G  NL   +    + N  L G
Sbjct: 278 -------------NNLCGEIPQGG--NLQRFDVSAYANNKCLCG 306

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 65.9 bits (159), Expect = 2e-12
 Identities = 57/269 (21%), Positives = 95/269 (35%), Gaps = 13/269 (4%)

Query: 226 TNSLPSLKVLKLTKCQLCHFPPLLS--ANFSSLKALHLAINNFDNSLFQYGSWVFGLRNL 283
                 +  L L+   L    P+ S  AN   L  L++     +N +      +  L  L
Sbjct: 46  DTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIG--GINNLVGPIPPAIAKLTQL 103

Query: 284 VFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQG 343
            ++ ++     G IP  L  + +L  LD  +N  + T P  +S   +L  ++   N + G
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163

Query: 344 TISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFS 403
            I            ++ +S N   G   PT                          D   
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA--------FVDLSRNMLEGDASV 215

Query: 404 SCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDL 463
             G+                   ++   K+L+ L+L +N ++G LP  L +L  L  L++
Sbjct: 216 LFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV 275

Query: 464 SNNMLNGFIPLSLGKLSHLEYLDLSNNKL 492
           S N L G IP   G L   +    +NNK 
Sbjct: 276 SFNNLCGEIP-QGGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 55.5 bits (132), Expect = 5e-09
 Identities = 57/278 (20%), Positives = 90/278 (32%), Gaps = 11/278 (3%)

Query: 198 SWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLK 257
              +  Y + +LDLS +NL K         +LP L  L +      +    +    + L 
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGI--NNLVGPIPPAIAKLT 101

Query: 258 ALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYF 317
            LH       N       ++  ++ LV +D S N   G +P  + +L +L  +    N  
Sbjct: 102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI 161

Query: 318 NSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFAR 377
           +   P     F+ L        +         L         +L+       +       
Sbjct: 162 SGAIPDSYGSFSKLFTSMTISRN--------RLTGKIPPTFANLNLAFVDLSRNMLEGDA 213

Query: 378 LCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTL 437
                S   +        S   D      +  L  LDL   +I G L   L Q K LH+L
Sbjct: 214 SVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSL 273

Query: 438 ELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLS 475
            +  N+L G +P   G L        +NN      PL 
Sbjct: 274 NVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPLP 310

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 52.4 bits (124), Expect = 5e-08
 Identities = 53/269 (19%), Positives = 98/269 (36%), Gaps = 12/269 (4%)

Query: 250 SANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSN-QFQGQIPIGLRNLTSLR 308
                 +  L L+  N     +   S +  L  L F+ +       G IP  +  LT L 
Sbjct: 46  DTQTYRVNNLDLSGLNL-PKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH 104

Query: 309 HLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLG 368
           +L +     +   P +LS+   L  L  ++N+L GT+    + +L ++  +   GN ++ 
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS-ISSLPNLVGITFDGN-RIS 162

Query: 369 GKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQL 428
           G IP S+    KL         ++   +++        A    +       +     + L
Sbjct: 163 GAIPDSYGSFSKLF------TSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVL 216

Query: 429 LQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLS 488
                         +        +G   +L  LDL NN + G +P  L +L  L  L++S
Sbjct: 217 FGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276

Query: 489 NNKLNASLSEIHFVNLTKLTWFSASGNSL 517
            N L   + +    NL +    + + N  
Sbjct: 277 FNNLCGEIPQ--GGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 39.3 bits (90), Expect = 8e-04
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 113 KLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPL 169
           ++ G +   L  LK L  L++S N+  G +IP+  G+L+       +  K     PL
Sbjct: 255 RIYGTLPQGLTQLKFLHSLNVSFNNLCG-EIPQ-GGNLQRFDVSAYANNKCLCGSPL 309

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 37.8 bits (86), Expect = 0.003
 Identities = 21/102 (20%), Positives = 32/102 (31%), Gaps = 2/102 (1%)

Query: 453 GELSSLKKLDLSNNMLNGF--IPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWF 510
            +   +  LDLS   L     IP SL  L +L +L +                LT+L + 
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 511 SASGNSLILKFNPNWVPPFQLETLQLRSCHLGPHFPSWLHSQ 552
             +  ++             L TL      L    P  + S 
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 69.7 bits (169), Expect = 1e-13
 Identities = 47/267 (17%), Positives = 79/267 (29%), Gaps = 22/267 (8%)

Query: 126 KHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGT 185
                LDL  N    I       +L+NL  L L   K + + P     L  L+ L LS  
Sbjct: 31  PDTALLDLQNNKITEI-KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 89

Query: 186 FLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHF 245
            L      +           L+ L + +  ++K    +    +   +  L     +    
Sbjct: 90  QLKELPEKMP--------KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI 141

Query: 246 PPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLT 305
                     L  + +A  N                +L  + L  N+        L+ L 
Sbjct: 142 ENGAFQGMKKLSYIRIADTNITTIPQGL------PPSLTELHLDGNKITKVDAASLKGLN 195

Query: 306 SLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGN- 364
           +L  L L FN  ++   G L+    L  L +  N L      +   +   I+ + L  N 
Sbjct: 196 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLA--DHKYIQVVYLHNNN 253

Query: 365 ----SKLGGKIPTSFARLCKLTSVDLS 387
                      P    +    + V L 
Sbjct: 254 ISAIGSNDFCPPGYNTKKASYSGVSLF 280

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 65.4 bits (158), Expect = 3e-12
 Identities = 49/263 (18%), Positives = 93/263 (35%), Gaps = 35/263 (13%)

Query: 281 RNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNS 340
            +   +DL +N+         +NL +L  L L  N  +  +PG  +    LE L ++ N 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 341 LQG--------------------TISSVGLENLTSIETLDLSGNS-KLGGKIPTSFARLC 379
           L+                      +       L  +  ++L  N  K  G    +F  + 
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 150

Query: 380 KLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLEL 439
           KL+ + ++  +++     +  +        L  L L   +I+      L    +L  L L
Sbjct: 151 KLSYIRIADTNITTIPQGLPPS--------LTELHLDGNKITKVDAASLKGLNNLAKLGL 202

Query: 440 GHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKL-----NA 494
             NS+      +L     L++L L+NN L   +P  L    +++ + L NN +     N 
Sbjct: 203 SFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSND 261

Query: 495 SLSEIHFVNLTKLTWFSASGNSL 517
                +       +  S   N +
Sbjct: 262 FCPPGYNTKKASYSGVSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 60.8 bits (146), Expect = 1e-10
 Identities = 46/270 (17%), Positives = 84/270 (31%), Gaps = 21/270 (7%)

Query: 230 PSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLS 289
           P   +L L   ++         N  +L  L L  N               L  L  + LS
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS---PGAFAPLVKLERLYLS 87

Query: 290 SNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVG 349
            NQ +       + L  LR  +        +    L++   +E  +    S      +  
Sbjct: 88  KNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA-- 145

Query: 350 LENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYA 409
            + +  +  + ++  +            + +     L+ + L  +    +D  S  G   
Sbjct: 146 FQGMKKLSYIRIADTN---------ITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNN 196

Query: 410 LESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLN 469
           L  L LS   IS      L     L  L L +N L    P  L +   ++ + L NN ++
Sbjct: 197 LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLADHKYIQVVYLHNNNIS 255

Query: 470 GF------IPLSLGKLSHLEYLDLSNNKLN 493
                    P    K +    + L +N + 
Sbjct: 256 AIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.3 bits (111), Expect = 2e-06
 Identities = 24/120 (20%), Positives = 35/120 (29%), Gaps = 2/120 (1%)

Query: 432 KSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNK 491
                L+L +N +          L +L  L L NN ++   P +   L  LE L LS N+
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 492 LNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLGPHFPSWLHS 551
           L   L E     L +L         +             +E L                 
Sbjct: 91  LK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE-LGTNPLKSSGIENGAFQG 148

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.2 bits (108), Expect = 4e-06
 Identities = 34/164 (20%), Positives = 53/164 (32%), Gaps = 25/164 (15%)

Query: 410 LESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLN 469
              LDL   +I+          K+LHTL L +N +    P A   L  L++L LS N L 
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92

Query: 470 GFIPLSLGKLSHLEYLDLSNNKLNASLSEIH----------------------FVNLTKL 507
                    L  L   +    K+  S+                          F  + KL
Sbjct: 93  ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 152

Query: 508 TWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLGPHFPSWLHS 551
           ++   +  +  +   P  +PP  L  L L    +     + L  
Sbjct: 153 SYIRIADTN--ITTIPQGLPP-SLTELHLDGNKITKVDAASLKG 193

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 22/97 (22%), Positives = 32/97 (32%), Gaps = 1/97 (1%)

Query: 456 SSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGN 515
                LDL NN +          L +L  L L NNK++  +S   F  L KL     S N
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKN 89

Query: 516 SLILKFNPNWVPPFQLETLQLRSCHLGPHFPSWLHSQ 552
            L            +L   +     +     + L+  
Sbjct: 90  QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQM 126

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.7 bits (135), Expect = 2e-09
 Identities = 48/238 (20%), Positives = 70/238 (29%), Gaps = 8/238 (3%)

Query: 281 RNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNS 340
                I L  N+         R   +L  L L  N          +    LE L ++ N+
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 341 LQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLD 400
              ++       L  + TL L                        L  + L  +  Q L 
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRC------GLQELGPGLFRGLAALQYLYLQDNALQALP 145

Query: 401 TFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKK 460
             +      L  L L   +IS           SL  L L  N +    P A  +L  L  
Sbjct: 146 DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT 205

Query: 461 LDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLI 518
           L L  N L+     +L  L  L+YL L++N                L  F  S + + 
Sbjct: 206 LYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL--WAWLQKFRGSSSEVP 261

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (123), Expect = 6e-08
 Identities = 43/224 (19%), Positives = 73/224 (32%), Gaps = 29/224 (12%)

Query: 354 TSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQD------------------- 394
            + + + L GN ++      SF     LT + L    L++                    
Sbjct: 32  AASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 395 -FSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALG 453
              + +D  +  G   L +L L  C +            +L  L L  N+L         
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR 150

Query: 454 ELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSAS 513
           +L +L  L L  N ++     +   L  L+ L L  N++   +    F +L +L      
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLF 209

Query: 514 GNSLILKFNPNWVPPFQLETLQLR------SCHLGPHFPSWLHS 551
            N+L         P   L+ L+L        C   P   +WL  
Sbjct: 210 ANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARP-LWAWLQK 252

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (102), Expect = 2e-05
 Identities = 44/263 (16%), Positives = 76/263 (28%), Gaps = 36/263 (13%)

Query: 126 KHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGT 185
                + L GN    +       +  NL  L L     A +       L+ L+       
Sbjct: 32  AASQRIFLHGNRISHV-PAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQ----LD 86

Query: 186 FLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHF 245
              N  L     +   GL  L  L L +           +   L +L+ L L    L   
Sbjct: 87  LSDNAQLRSVDPATFHGLGRLHTLHLDRCG--LQELGPGLFRGLAALQYLYLQDNALQAL 144

Query: 246 PPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLT 305
           P     +  +L  L L  N   +          GL +L  + L  N+     P   R+L 
Sbjct: 145 PDDTFRDLGNLTHLFLHGNRISSVPE---RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 201

Query: 306 ------------------------SLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSL 341
                                   +L++L L  N +          +  L+    + + +
Sbjct: 202 RLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC-DCRARPLWAWLQKFRGSSSEV 260

Query: 342 QGTI-SSVGLENLTSIETLDLSG 363
             ++   +   +L  +   DL G
Sbjct: 261 PCSLPQRLAGRDLKRLAANDLQG 283

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 54.7 bits (130), Expect = 5e-09
 Identities = 35/218 (16%), Positives = 66/218 (30%), Gaps = 15/218 (6%)

Query: 279 GLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAW 338
            L N + I    +     +     +L  +  L        +     +   N+L  L +  
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKD 72

Query: 339 NSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQV 398
           N +        L  +T +E       +        S   L   ++    +  L+   +  
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 399 LDTFSSCGAYALESLDL-------SICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPA 451
           +          +  L         SI          L     L TL+   N +       
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDI--SP 190

Query: 452 LGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSN 489
           L  L +L ++ L NN ++   PL+    S+L  + L+N
Sbjct: 191 LASLPNLIEVHLKNNQISDVSPLA--NTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.8 bits (120), Expect = 1e-07
 Identities = 31/216 (14%), Positives = 74/216 (34%), Gaps = 13/216 (6%)

Query: 125 LKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSG 184
           L + I +    ++            L+ +  L+  G     +  +Q   L+NL  L+L  
Sbjct: 18  LANAIKIAAGKSNVTDTV---TQADLDGITTLSAFGTGVTTIEGVQ--YLNNLIGLELKD 72

Query: 185 TFLSNYD----LHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKC 240
             +++      L   +   LSG  +     ++ +   K  D      +  +         
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 241 QLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIG 300
            L      ++         +L   +  N+     + +  L  L  +    N+     P+ 
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLA 192

Query: 301 LRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSV 336
             +L +L  + L+ N  +  +P  L+  ++L  +++
Sbjct: 193 --SLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.0 bits (105), Expect = 7e-06
 Identities = 40/197 (20%), Positives = 67/197 (34%), Gaps = 11/197 (5%)

Query: 121 SLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYL 180
           +  DL  +  L   G     I+    +  L NL  L L   +        L NL+ +  L
Sbjct: 36  TQADLDGITTLSAFGTGVTTIEG---VQYLNNLIGLELKDNQI--TDLAPLKNLTKITEL 90

Query: 181 DLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKC 240
           +LSG  L N        S  +       +         ++  +L  +      +  L   
Sbjct: 91  ELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGL 150

Query: 241 QLCHFPPLLSANFSSLKAL----HLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQ 296
               +  + +A  S L  L     L     D++     S +  L NL+ + L +NQ    
Sbjct: 151 TNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDV 210

Query: 297 IPIGLRNLTSLRHLDLR 313
            P  L N ++L  + L 
Sbjct: 211 SP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.7 bits (99), Expect = 5e-05
 Identities = 29/239 (12%), Positives = 60/239 (25%), Gaps = 30/239 (12%)

Query: 149 SLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEH 208
           +L N   +    +     +     +L  +  L   GT ++       ++  +  L  L  
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT-------TIEGVQYLNNLIG 67

Query: 209 LDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDN 268
           L+L    ++  +                           L      ++ A+    +    
Sbjct: 68  LELKDNQITDLAPL---------------KNLTKITELELSGNPLKNVSAIAGLQSIKTL 112

Query: 269 SLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKF 328
            L             +           QI              L       +    L+  
Sbjct: 113 DLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANL 172

Query: 329 NDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLS 387
           + L  L    N +        L +L ++  + L  N ++    P   A    L  V L+
Sbjct: 173 SKLTTLKADDNKISDISP---LASLPNLIEVHLKNN-QISDVSP--LANTSNLFIVTLT 225

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (125), Expect = 3e-08
 Identities = 32/215 (14%), Positives = 54/215 (25%), Gaps = 18/215 (8%)

Query: 128 LIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFL 187
            + ++    +     +P  L    +   L+LS           L   + L  L+L    L
Sbjct: 12  HLEVNCDKRNLT--ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL 67

Query: 188 SNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPP 247
           +   +       L  L  L+       +L      L                        
Sbjct: 68  TKLQVDG----TLPVLGTLDLSHNQLQSLPLLGQTLPALTV---------LDVSFNRLTS 114

Query: 248 LLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSL 307
           L       L  L       +         +     L  + L++N         L  L +L
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL 174

Query: 308 RHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQ 342
             L L+ N    T P      + L F  +  N   
Sbjct: 175 DTLLLQENSL-YTIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (123), Expect = 5e-08
 Identities = 34/222 (15%), Positives = 62/222 (27%), Gaps = 14/222 (6%)

Query: 282 NLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSL 341
           + + ++         +P  L        L L  N   + +   L  +  L  L++    L
Sbjct: 11  SHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL 67

Query: 342 QGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDT 401
                   L  L +++       S            +  ++   L+ + L          
Sbjct: 68  TKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127

Query: 402 FSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKL 461
                   L++L   +                L  L L +N+L       L  L +L  L
Sbjct: 128 ELYLKGNELKTLPPGLLT----------PTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177

Query: 462 DLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVN 503
            L  N L   IP        L +  L  N    +   ++F  
Sbjct: 178 LLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRR 218

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (105), Expect = 9e-06
 Identities = 29/193 (15%), Positives = 43/193 (22%), Gaps = 15/193 (7%)

Query: 126 KHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGT 185
           K    L LS N          L     L  LNL  A+   +       +     L  +  
Sbjct: 31  KDTTILHLSENLLYTF-SLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQL 89

Query: 186 FLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHF 245
                         +  +       L    L    +              +    +    
Sbjct: 90  QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL-------------QELYLKGNEL 136

Query: 246 PPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLT 305
             L     +    L       +N        + GL NL  + L  N     IP G     
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSH 195

Query: 306 SLRHLDLRFNYFN 318
            L    L  N + 
Sbjct: 196 LLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 3e-04
 Identities = 17/63 (26%), Positives = 23/63 (36%), Gaps = 2/63 (3%)

Query: 448 LPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKL 507
           LPP L        L LS N+L  F   +L   + L  L+L   +L     +     L  L
Sbjct: 25  LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTL 82

Query: 508 TWF 510
              
Sbjct: 83  DLS 85

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (121), Expect = 2e-07
 Identities = 24/151 (15%), Positives = 45/151 (29%), Gaps = 10/151 (6%)

Query: 410 LESLDLSICQISGHLTNQLL-QFKSLHTLELGHNSL----FGPLPPALGELSSLKKLDLS 464
           ++SLD+   ++S     +LL   +    + L    L       +  AL    +L +L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 465 NNMLNGFIPLSLGKL-----SHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLIL 519
           +N L       + +        ++ L L N  L  +   +    L  L        S  L
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123

Query: 520 KFNPNWVPPFQLETLQLRSCHLGPHFPSWLH 550
             +       +                  L 
Sbjct: 124 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS 154

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (111), Expect = 2e-06
 Identities = 14/92 (15%), Positives = 28/92 (30%), Gaps = 4/92 (4%)

Query: 128 LIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKF----AGMIPLQLGNLSNLQYLDLS 183
           +  LD+   +    +  + L  L+  + + L            I   L     L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 184 GTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMN 215
              L +  +H       +    ++ L L    
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (96), Expect = 2e-04
 Identities = 20/72 (27%), Positives = 26/72 (36%), Gaps = 9/72 (12%)

Query: 431 FKSLHTLELGHNSL----FGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGK-----LSH 481
              L  L L    +       L   L    SL++LDLSNN L     L L +        
Sbjct: 368 GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCL 427

Query: 482 LEYLDLSNNKLN 493
           LE L L +   +
Sbjct: 428 LEQLVLYDIYWS 439

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (91), Expect = 6e-04
 Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 9/79 (11%)

Query: 410 LESLDLSICQISG----HLTNQLLQFKSLHTLELGHNSLFGPLPPALGE-----LSSLKK 460
           L  L L+ C +S      L   LL   SL  L+L +N L       L E        L++
Sbjct: 371 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQ 430

Query: 461 LDLSNNMLNGFIPLSLGKL 479
           L L +   +  +   L  L
Sbjct: 431 LVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 0.001
 Identities = 19/91 (20%), Positives = 31/91 (34%), Gaps = 6/91 (6%)

Query: 243 CHFPPLLSANFSSLKALHLAINNF-DNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGL 301
                 L    S L+ L LA  +  D+S     + +    +L  +DLS+N       + L
Sbjct: 358 RELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQL 417

Query: 302 -----RNLTSLRHLDLRFNYFNSTTPGWLSK 327
                +    L  L L   Y++      L  
Sbjct: 418 VESVRQPGCLLEQLVLYDIYWSEEMEDRLQA 448

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.002
 Identities = 20/124 (16%), Positives = 37/124 (29%), Gaps = 29/124 (23%)

Query: 206 LEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINN 265
           ++ LD+    LS A  W  +   L   +V++L  C L           +  K +  A+  
Sbjct: 4   IQSLDIQCEELSDA-RWAELLPLLQQCQVVRLDDCGL---------TEARCKDISSALRV 53

Query: 266 FDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGL-----RNLTSLRHLDLRFNYFNST 320
                            L  ++L SN+        +          ++ L L+       
Sbjct: 54  --------------NPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGA 99

Query: 321 TPGW 324
             G 
Sbjct: 100 GCGV 103

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (114), Expect = 5e-07
 Identities = 22/211 (10%), Positives = 48/211 (22%), Gaps = 3/211 (1%)

Query: 281 RNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNS 340
           RN + +     + +            L  +++  N         +              +
Sbjct: 29  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 88

Query: 341 LQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLD 400
                 +             L  N+ +            +   +D   I  + +   +  
Sbjct: 89  NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLD---IQDNINIHTIER 145

Query: 401 TFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKK 460
                 ++    L L+   I           +        +N+L           S    
Sbjct: 146 NSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVI 205

Query: 461 LDLSNNMLNGFIPLSLGKLSHLEYLDLSNNK 491
           LD+S   ++      L  L  L      N K
Sbjct: 206 LDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 7e-04
 Identities = 40/231 (17%), Positives = 68/231 (29%), Gaps = 7/231 (3%)

Query: 286 IDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTI 345
                ++   +IP  L    +   L            G  S F DLE + ++ N +   I
Sbjct: 13  FLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 69

Query: 346 SSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSC 405
            +    NL  +  + +   + L    P +F  L  L  + +S   +              
Sbjct: 70  EADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGI---KHLPDVHKIHS 126

Query: 406 GAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSN 465
               L  +  +I   +    + +        L L  N +      A       +     N
Sbjct: 127 LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDN 186

Query: 466 NMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNS 516
           N L           S    LD+S  +++ SL      NL KL   S     
Sbjct: 187 NNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 8e-04
 Identities = 29/237 (12%), Positives = 61/237 (25%), Gaps = 11/237 (4%)

Query: 131 LDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNY 190
                +     +IP  L    N   L     K   +         +L+ +++      + 
Sbjct: 13  FLCQESKVT--EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEI------SQ 62

Query: 191 DLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLS 250
           +  ++ +       + +  ++     +                   L         P + 
Sbjct: 63  NDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVH 122

Query: 251 ANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHL 310
              S  K L    +N +    +  S+V      V + L+ N  Q                
Sbjct: 123 KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELN 182

Query: 311 DLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKL 367
               N             +    L ++   +  ++ S GLENL  +         KL
Sbjct: 183 LSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLKKL 238

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (116), Expect = 5e-07
 Identities = 36/195 (18%), Positives = 62/195 (31%), Gaps = 2/195 (1%)

Query: 120 PSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQY 179
                   + H+DLS +  E   +   L     L+ L+L G + +  I   L   SNL  
Sbjct: 40  AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVR 99

Query: 180 LDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTK 239
           L+LSG    +       LS  S L  L                +   +   +   L    
Sbjct: 100 LNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY- 158

Query: 240 CQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSS-NQFQGQIP 298
            +      L +        +HL +++            F L  L  + LS       +  
Sbjct: 159 RKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL 218

Query: 299 IGLRNLTSLRHLDLR 313
           + L  + +L+ L + 
Sbjct: 219 LELGEIPTLKTLQVF 233

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (112), Expect = 1e-06
 Identities = 42/246 (17%), Positives = 79/246 (32%), Gaps = 15/246 (6%)

Query: 130 HLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSN 189
            LDL+G +       + L   + +       +     +         +Q++DLS + +  
Sbjct: 4   TLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQPLAEHFSPF-RVQHMDLSNSVIEV 60

Query: 190 YDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLL 249
             LH      LS    L++L L  + LS      L      +L  L L+ C       L 
Sbjct: 61  STLH----GILSQCSKLQNLSLEGLRLSDPIVNTLA--KNSNLVRLNLSGCSGFSEFALQ 114

Query: 250 S-----ANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNL 304
           +     +    L           +           +  L       N  +  +   +R  
Sbjct: 115 TLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRC 174

Query: 305 TSLRHLDLRFNYFNS-TTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSG 363
            +L HLDL  +            + N L+ LS++        + + L  + +++TL + G
Sbjct: 175 PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 234

Query: 364 NSKLGG 369
               G 
Sbjct: 235 IVPDGT 240

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (106), Expect = 9e-06
 Identities = 43/233 (18%), Positives = 83/233 (35%), Gaps = 8/233 (3%)

Query: 255 SLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQG-QIPIGLRNLTSLRHLDLR 313
            + A     +  D  L ++    F    +  +DLS++  +   +   L   + L++L L 
Sbjct: 24  GVIAFRCPRSFMDQPLAEH----FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 79

Query: 314 FNYFNSTTPGWLSKFNDLEFLSVAWN-SLQGTISSVGLENLTSIETLDLSGNSKLGGKIP 372
               +      L+K ++L  L+++             L + + ++ L+LS       K  
Sbjct: 80  GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHV 139

Query: 373 TSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSIC-QISGHLTNQLLQF 431
                    T   L+L    ++  +   +        L  LDLS    +      +  Q 
Sbjct: 140 QVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQL 199

Query: 432 KSLHTLELGH-NSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLE 483
             L  L L     +       LGE+ +LK L +   + +G + L    L HL+
Sbjct: 200 NYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ 252

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 6e-04
 Identities = 47/233 (20%), Positives = 81/233 (34%), Gaps = 12/233 (5%)

Query: 126 KHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKF-AGMIPLQLGNLSNLQYLDLSG 184
           + +I      +  +  Q      S   +++++LS +      +   L   S LQ L L G
Sbjct: 23  QGVIAFRCPRSFMD--QPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG 80

Query: 185 TFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCH 244
             LS  D  V++L+  S L  L     S  +       L   + L  L +         H
Sbjct: 81  LRLS--DPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKH 138

Query: 245 FPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSN-QFQGQIPIGLRN 303
               ++    ++  L+L+    +       + V    NLV +DLS +   +         
Sbjct: 139 VQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ 198

Query: 304 LTSLRHLDL-RFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTS 355
           L  L+HL L R       T   L +   L+ L      + G +    L+ L  
Sbjct: 199 LNYLQHLSLSRCYDIIPETLLELGEIPTLKTL-----QVFGIVPDGTLQLLKE 246

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 0.004
 Identities = 23/117 (19%), Positives = 33/117 (28%), Gaps = 4/117 (3%)

Query: 435 HTLELGHNSLFGPLPPALGELSSLKKLDLS-NNMLNGFIPLSLGKLSHLEYLDLSNNKLN 493
            TL+L   +L    P   G L S   +                     ++++DLSN+ + 
Sbjct: 3   QTLDLTGKNL---HPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIE 59

Query: 494 ASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLGPHFPSWLH 550
            S         +KL   S  G  L             L  L L  C     F     
Sbjct: 60  VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL 116

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.5 bits (96), Expect = 8e-05
 Identities = 32/219 (14%), Positives = 64/219 (29%), Gaps = 39/219 (17%)

Query: 279 GLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAW 338
                +  +L          +    L S+  +    +   S                   
Sbjct: 22  AFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIKSVQ----------------- 62

Query: 339 NSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQV 398
                     G++ L ++  L L+GN     K   +   L  L   +  + DLS      
Sbjct: 63  ----------GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLK 112

Query: 399 LDTFSSCGAYALESLD--------LSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPP 450
                S     +  ++         S+   +  +T+  +  +      L           
Sbjct: 113 KLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV 172

Query: 451 ALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSN 489
            L  L+ L+ L LS N ++    L+   L +L+ L+L +
Sbjct: 173 PLAGLTKLQNLYLSKNHISDLRALA--GLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.5 bits (83), Expect = 0.004
 Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 4/63 (6%)

Query: 430 QFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSN 489
            F       L   S+   +     EL+S+ ++  +N+ +     +    L ++  L L+ 
Sbjct: 22  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQ--YLPNVTKLFLNG 77

Query: 490 NKL 492
           NKL
Sbjct: 78  NKL 80

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.5 bits (98), Expect = 9e-05
 Identities = 60/321 (18%), Positives = 93/321 (28%), Gaps = 23/321 (7%)

Query: 175 SNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKV 234
                L+L+   LS         S       LE L  S  +L++  +      SL SL V
Sbjct: 38  RQAHELELNNLGLS---------SLPELPPHLESLVASCNSLTELPELP---QSLKSLLV 85

Query: 235 LKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQ 294
                  L   PPLL     S   L       ++S  +           +     S +F 
Sbjct: 86  DNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFI 145

Query: 295 GQIPIGLRNLTSLRHLDLR--FNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLEN 352
                 L  L  L++L         N++          LE +    N L+       L  
Sbjct: 146 AAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPF 205

Query: 353 LTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALES 412
           LT+I   +    +            +      DL  +         +      G   L  
Sbjct: 206 LTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELP-QSLTFLDVSENIFSGLSELPP 264

Query: 413 LDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFI 472
               +   S  + +      SL  L + +N L   LP        L++L  S N L    
Sbjct: 265 NLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPA---LPPRLERLIASFNHLAEVP 320

Query: 473 PLSLGKLSHLEYLDLSNNKLN 493
            L      +L+ L +  N L 
Sbjct: 321 EL----PQNLKQLHVEYNPLR 337

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.3 bits (95), Expect = 2e-04
 Identities = 52/339 (15%), Positives = 91/339 (26%), Gaps = 31/339 (9%)

Query: 206 LEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINN 265
              L+L+ + LS       +    P L+ L  +   L   P L      SLK+L +  NN
Sbjct: 40  AHELELNNLGLSS------LPELPPHLESLVASCNSLTELPELP----QSLKSLLVDNNN 89

Query: 266 FDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWL 325
                       +   +   ++                      L    +   S      
Sbjct: 90  LKALSDLPPLLEYLGVSNNQLE--KLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAA 147

Query: 326 SKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVD 385
                 E   +        I +         +      +   G  I      L  L  + 
Sbjct: 148 GNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLT 207

Query: 386 LSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLH------TLEL 439
               D +   +      S       ++    + ++   LT   +                
Sbjct: 208 TIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLY 267

Query: 440 GHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEI 499
             N+    +        SL++L++SNN L     L       LE L  S N L   + E+
Sbjct: 268 YLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL----PPRLERLIASFNHLA-EVPEL 322

Query: 500 HFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRS 538
                  L       N   L+  P+   P  +E L++ S
Sbjct: 323 ----PQNLKQLHVEYNP--LREFPDI--PESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.5 bits (85), Expect = 0.003
 Identities = 15/76 (19%), Positives = 24/76 (31%), Gaps = 9/76 (11%)

Query: 125 LKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSG 184
              L  L++S N    +           L  L  S    A +  L      NL+ L +  
Sbjct: 283 PPSLEELNVSNNKLIELP-----ALPPRLERLIASFNHLAEVPEL----PQNLKQLHVEY 333

Query: 185 TFLSNYDLHVDSLSWL 200
             L  +    +S+  L
Sbjct: 334 NPLREFPDIPESVEDL 349

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.3 bits (91), Expect = 2e-04
 Identities = 21/102 (20%), Positives = 33/102 (32%), Gaps = 6/102 (5%)

Query: 286 IDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTI 345
           + L+       +   L  L  + HLDL  N   +  P        L  L V   S     
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPA----LAALRCLEVLQASDNALE 56

Query: 346 SSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLS 387
           +  G+ NL  ++ L L  N               +L  ++L 
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQ 98

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.9 bits (90), Expect = 2e-04
 Identities = 26/129 (20%), Positives = 52/129 (40%), Gaps = 12/129 (9%)

Query: 131 LDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNY 190
           L L+  D   + +  +L  L  + +L+LS  +   + P  L  L  L+ L          
Sbjct: 3   LHLAHKD---LTVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQ-------AS 51

Query: 191 DLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLS 250
           D  ++++  ++ L  L+ L L    L +++    + +  P L +L L    LC    +  
Sbjct: 52  DNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVS-CPRLVLLNLQGNSLCQEEGIQE 110

Query: 251 ANFSSLKAL 259
                L ++
Sbjct: 111 RLAEMLPSV 119

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.5 bits (89), Expect = 3e-04
 Identities = 28/104 (26%), Positives = 39/104 (37%), Gaps = 25/104 (24%)

Query: 436 TLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHL------------- 482
            L L H  L   +   L +L  +  LDLS+N L    P +L  L  L             
Sbjct: 2   VLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENV 58

Query: 483 ---------EYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSL 517
                    + L L NN+L  S +    V+  +L   +  GNSL
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.4 bits (86), Expect = 8e-04
 Identities = 24/108 (22%), Positives = 40/108 (37%), Gaps = 5/108 (4%)

Query: 279 GLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAW 338
            L  +  +DLS N+ +   P  L  L  L  L    N   +           L+ L +  
Sbjct: 18  QLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVDGVA--NLPRLQELLLCN 74

Query: 339 NSLQGTISSVGLENLTSIETLDLSGN--SKLGGKIPTSFARLCKLTSV 384
           N LQ + +   L +   +  L+L GN   +  G        L  ++S+
Sbjct: 75  NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.8 bits (82), Expect = 0.003
 Identities = 28/117 (23%), Positives = 41/117 (35%), Gaps = 9/117 (7%)

Query: 120 PSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQY 179
             L  L  + HLDLS N    +     L +L  L  L  S      +  +   NL  LQ 
Sbjct: 14  CHLEQLLLVTHLDLSHNRLRALP--PALAALRCLEVLQASDNALENVDGVA--NLPRLQE 69

Query: 180 LDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLL-VTNSLPSLKVL 235
           L L    L        ++  L     L  L+L   +L +       +   LPS+  +
Sbjct: 70  LLLCNNRLQQ----SAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 23/126 (18%), Positives = 41/126 (32%), Gaps = 5/126 (3%)

Query: 429 LQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNG----FIPLSLGKLSHLEY 484
           ++ KSL    +        +   L E  S+K++ LS N +      ++  ++     LE 
Sbjct: 5   IEGKSLKLDAITTEDE-KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 63

Query: 485 LDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLGPH 544
            + S+        EI       L           ++ + N   P   E L        P 
Sbjct: 64  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 123

Query: 545 FPSWLH 550
              +LH
Sbjct: 124 EHLYLH 129

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 38.7 bits (88), Expect = 0.001
 Identities = 37/303 (12%), Positives = 79/303 (26%), Gaps = 19/303 (6%)

Query: 197 LSWLSGLYMLEHLDLSQMNLSKASDWLLVTN--SLPSLKVLKLTKCQLCHFPPLLSANFS 254
            + L     ++ + LS   +   +   L  N  S   L++ + +          +     
Sbjct: 24  FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALR 83

Query: 255 SLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRF 314
            L    L             ++    +  +   LS +     + +    L       +  
Sbjct: 84  LLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR 143

Query: 315 NYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTS 374
                           L  +    N L+        +   S   L      + G +    
Sbjct: 144 ALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGI 203

Query: 375 FARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSL 434
              L +  +      +L     Q         +    +L          L + LL  +  
Sbjct: 204 EHLLLEGLA---YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR-- 258

Query: 435 HTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSL-----GKLSHLEYLDLSN 489
                G  ++      +  E   L+ L L  N +      +L      K+  L +L+L+ 
Sbjct: 259 -----GAAAVVDAF--SKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNG 311

Query: 490 NKL 492
           N+ 
Sbjct: 312 NRF 314

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.9 bits (86), Expect = 0.002
 Identities = 46/351 (13%), Positives = 90/351 (25%), Gaps = 31/351 (8%)

Query: 126 KHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLS----GAKFAGMIPLQLGNLSNLQYLD 181
           K L    ++  D +   +   L   ++++ + LS    G + A  +   + +  +L+  +
Sbjct: 8   KSLKLDAITTEDEK--SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAE 65

Query: 182 LSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQ 241
            S  F       +     L    +L+   L  + LS  +        L            
Sbjct: 66  FSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEH 125

Query: 242 LCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGL 301
           L      L     +  A  L     +            +     ++  S +   +     
Sbjct: 126 LYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH 185

Query: 302 RNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDL 361
           R L +++ +                     E   +       T                 
Sbjct: 186 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA--------- 236

Query: 362 SGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQIS 421
                          R   L    LS    ++  + V+D FS      L++L L   +I 
Sbjct: 237 ------IALKSWPNLRELGLNDCLLS----ARGAAAVVDAFSKLENIGLQTLRLQYNEIE 286

Query: 422 GHLTNQLLQ-----FKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNM 467
                 L          L  LEL  N  F      + E+  +        +
Sbjct: 287 LDAVRTLKTVIDEKMPDLLFLELNGNR-FSEEDDVVDEIREVFSTRGRGEL 336

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 4e-04
 Identities = 25/146 (17%), Positives = 45/146 (30%), Gaps = 11/146 (7%)

Query: 169 LQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNS 228
            Q  N    + LDL G  +   +      +  + L   + +D S   +      L     
Sbjct: 12  AQYTNAVRDRELDLRGYKIPVIE------NLGATLDQFDAIDFSDNEI----RKLDGFPL 61

Query: 229 LPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDN-SLFQYGSWVFGLRNLVFID 287
           L  LK L +   ++C     L      L  L L  N+          + +  L  L  + 
Sbjct: 62  LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILR 121

Query: 288 LSSNQFQGQIPIGLRNLTSLRHLDLR 313
                 +      +  +  +R LD +
Sbjct: 122 NPVTNKKHYRLYVIYKVPQVRVLDFQ 147

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 0.003
 Identities = 14/103 (13%), Positives = 26/103 (25%), Gaps = 1/103 (0%)

Query: 450 PALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTW 509
                    ++LDL    +   I      L   + +D S+N++           L  L  
Sbjct: 12  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLV 70

Query: 510 FSASGNSLILKFNPNWVPPFQLETLQLRSCHLGPHFPSWLHSQ 552
            +     +    +       +L         LG   P      
Sbjct: 71  NNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKS 113

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (85), Expect = 0.002
 Identities = 25/160 (15%), Positives = 52/160 (32%), Gaps = 14/160 (8%)

Query: 132 DLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYD 191
           +L     E  Q+   +    +     L            L   +    L+   +  +   
Sbjct: 3   ELKPEQVE--QLKLIMSKRYDGSQQALDLKGL--RSDPDLVAQNIDVVLNRRSSMAATLR 58

Query: 192 LHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSA 251
           +  +++  L        L+LS   L +  D   +    P+LK+L L+  +L     L   
Sbjct: 59  IIEENIPEL------LSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKI 112

Query: 252 NFSSLKALHLAINNFDNSLFQYGSW----VFGLRNLVFID 287
               L+ L L  N+  ++     ++          L+ +D
Sbjct: 113 KGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD 152

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 35/210 (16%), Positives = 63/210 (30%), Gaps = 27/210 (12%)

Query: 125 LKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSG 184
           L   +   L   +            L+ +  L         +  ++   L+NL  ++ S 
Sbjct: 17  LAEKMKTVLGKTNVTDT---VSQTDLDQVTTLQADRLGIKSIDGVE--YLNNLTQINFSN 71

Query: 185 TFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCH 244
                          L+ +  L++L      L   +    +T       +  LT      
Sbjct: 72  N-------------QLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQI 118

Query: 245 FPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNL 304
                  N ++L  L L+ N   +     G       N     ++           L NL
Sbjct: 119 TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTD-------LKPLANL 171

Query: 305 TSLRHLDLRFNYFNSTTPGWLSKFNDLEFL 334
           T+L  LD+  N    +    L+K  +LE L
Sbjct: 172 TTLERLDISSNKV--SDISVLAKLTNLESL 199

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	552
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.96
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.96
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.88
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.87
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.83
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.83
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.8
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.76
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.74
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.7
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.7
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.65
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.64
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.64
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.63
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.58
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.51
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.49
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.48
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.46
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.43
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.41
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.22
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.19
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.14
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.11
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.2
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.13
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.89
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.55
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.22
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.88

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=6e-40  Score=318.40  Aligned_cols=298  Identities=28%  Similarity=0.369  Sum_probs=248.8

Q ss_pred             CCcHHHHHHHHHhHhcCCCCCCCCCCCCCCCCCCc--ccCceEecCCC--CcEEEEEcCCCCccCCCCchhhcccCcccc
Q 047285           36 GCIDSEREALLKLKQDLIDPSNRLASWNTGDGDCC--KWAGVFCSNIT--GHVLQLSLQNPFSYLGGDLREVKAGSNYER  111 (552)
Q Consensus        36 ~~~~~~~~~l~~~~~~~~~~~~~~~~W~~~~~~~c--~w~gv~c~~~~--~~v~~L~l~~~~~~~~~~l~~l~~~~~~~~  111 (552)
                      -|.++|++||++||+++.+|. .+++|+. +.|||  .|.||+|+...  +||++|+|++.                   
T Consensus         2 ~c~~~e~~aLl~~k~~~~~~~-~l~sW~~-~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~-------------------   60 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLGNPT-TLSSWLP-TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL-------------------   60 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-GGTTCCT-TSCTTTTCSTTEEECCSSSCCCEEEEEEECC-------------------
T ss_pred             CCCHHHHHHHHHHHHHCCCCC-cCCCCCC-CCCCCCCcCCCeEEeCCCCcEEEEEEECCCC-------------------
Confidence            499999999999999998874 6899986 67999  49999998643  48999999984                   


Q ss_pred             Ccccc--ccCccccCCCCCCEEeCCC-CcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCC
Q 047285          112 SKLGG--KVNPSLVDLKHLIHLDLSG-NDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLS  188 (552)
Q Consensus       112 ~~~~~--~~~~~l~~l~~L~~L~Ls~-n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~  188 (552)
                       .+.|  .+|++++++++|++|+|++ |.+.| .+|..|+++++|++|+|++|++.+..|..+.++++|+++++++|.+.
T Consensus        61 -~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g-~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~  138 (313)
T d1ogqa_          61 -NLPKPYPIPSSLANLPYLNFLYIGGINNLVG-PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS  138 (313)
T ss_dssp             -CCSSCEECCGGGGGCTTCSEEEEEEETTEES-CCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred             -CCCCCCCCChHHhcCcccccccccccccccc-ccccccccccccchhhhccccccccccccccchhhhccccccccccc
Confidence             5665  5789999999999999987 78888 59999999999999999999999888888999999999999998644


Q ss_pred             CCccccCCccccCCCCCCCEEeCCCCcCCCCcchhhhcCCCCCC-CEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCC
Q 047285          189 NYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSL-KVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFD  267 (552)
Q Consensus       189 ~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L-~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~  267 (552)
                      ...     .+.+..+++|+++++++|.+.+  .++..+..+..+ +.+++++|.+++..+..+..+..+ .+++..+...
T Consensus       139 ~~~-----p~~l~~l~~L~~l~l~~n~l~~--~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~~  210 (313)
T d1ogqa_         139 GTL-----PPSISSLPNLVGITFDGNRISG--AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNMLE  210 (313)
T ss_dssp             SCC-----CGGGGGCTTCCEEECCSSCCEE--ECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEEE
T ss_pred             ccC-----chhhccCcccceeecccccccc--ccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence            311     1247888999999999998876  456666666665 888899998888888777776554 6888888888


Q ss_pred             CCCccccccccCCCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCc
Q 047285          268 NSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISS  347 (552)
Q Consensus       268 ~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~  347 (552)
                      +.++.   .+..+++++.+++++|.+.+.++ .+..+++|+.|++++|++++.+|..++++++|++|++++|+++|.+|.
T Consensus       211 ~~~~~---~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~  286 (313)
T d1ogqa_         211 GDASV---LFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             ECCGG---GCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred             ccccc---ccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC
Confidence            88777   77788889999999998887655 577788899999999999888888888899999999999999988885


Q ss_pred             cccCCCCccCEEeCCCCCCCCCC
Q 047285          348 VGLENLTSIETLDLSGNSKLGGK  370 (552)
Q Consensus       348 ~~l~~l~~L~~L~l~~n~~l~~~  370 (552)
                        ++++++|+.+++++|+.+.|.
T Consensus       287 --~~~L~~L~~l~l~~N~~l~g~  307 (313)
T d1ogqa_         287 --GGNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             --STTGGGSCGGGTCSSSEEEST
T ss_pred             --cccCCCCCHHHhCCCccccCC
Confidence              577888888888888755553

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.96  E-value=1.2e-29  Score=245.42  Aligned_cols=257  Identities=23%  Similarity=0.342  Sum_probs=208.5

Q ss_pred             CCceeecCCCCCCCC--CccccccccCCCCccEEeccC-ccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCC
Q 047285          255 SLKALHLAINNFDNS--LFQYGSWVFGLRNLVFIDLSS-NQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDL  331 (552)
Q Consensus       255 ~L~~L~l~~n~~~~~--~~~~~~~~~~l~~L~~L~L~~-n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L  331 (552)
                      +++.|+++++++.+.  +|.   .++++++|++|++++ |.++|.+|..++++++|++|++++|++.+..+..+..+++|
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~---~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L  127 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPS---SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL  127 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCG---GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred             EEEEEECCCCCCCCCCCCCh---HHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhh
Confidence            456666666666653  344   677788888888876 67777788888888888888888888887777777778888


Q ss_pred             CEEEccCccceeecCccccCCCCccCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCC
Q 047285          332 EFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALE  411 (552)
Q Consensus       332 ~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~  411 (552)
                      +.++++.|.+.+.+|.. +..++.++.+++++|. +.+.+|..+..+.+                            .++
T Consensus       128 ~~l~l~~N~~~~~~p~~-l~~l~~L~~l~l~~n~-l~~~ip~~~~~l~~----------------------------l~~  177 (313)
T d1ogqa_         128 VTLDFSYNALSGTLPPS-ISSLPNLVGITFDGNR-ISGAIPDSYGSFSK----------------------------LFT  177 (313)
T ss_dssp             CEEECCSSEEESCCCGG-GGGCTTCCEEECCSSC-CEEECCGGGGCCCT----------------------------TCC
T ss_pred             cccccccccccccCchh-hccCcccceeeccccc-cccccccccccccc----------------------------ccc
Confidence            88888888887777776 7788888888888887 77777777766551                            357


Q ss_pred             EEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcc
Q 047285          412 SLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNK  491 (552)
Q Consensus       412 ~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  491 (552)
                      .+++++|++++..+..+..+..+ .++++++...+.+|..+..+++++.+++++|.+.+.+| .+..+++|+.|++++|+
T Consensus       178 ~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~  255 (313)
T d1ogqa_         178 SMTISRNRLTGKIPPTFANLNLA-FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNR  255 (313)
T ss_dssp             EEECCSSEEEEECCGGGGGCCCS-EEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSC
T ss_pred             ccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccc-ccccccccccccCccCe
Confidence            88889999998888888777654 79999999999999999999999999999999987655 57788999999999999


Q ss_pred             cceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcccccEEecCCCC-CCC-CCCcc
Q 047285          492 LNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCH-LGP-HFPSW  548 (552)
Q Consensus       492 l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~-~~~-~iP~~  548 (552)
                      ++|.+|. .+.++++|++|+|++|+++|.+| .+..+.+|+.+++++|+ ++| ++|.+
T Consensus       256 l~g~iP~-~l~~L~~L~~L~Ls~N~l~g~iP-~~~~L~~L~~l~l~~N~~l~g~plp~c  312 (313)
T d1ogqa_         256 IYGTLPQ-GLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSPLPAC  312 (313)
T ss_dssp             CEECCCG-GGGGCTTCCEEECCSSEEEEECC-CSTTGGGSCGGGTCSSSEEESTTSSCC
T ss_pred             ecccCCh-HHhCCCCCCEEECcCCcccccCC-CcccCCCCCHHHhCCCccccCCCCCCC
Confidence            9999998 79999999999999999999998 46788899999999998 565 47764

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.96  E-value=2.6e-27  Score=235.79  Aligned_cols=351  Identities=25%  Similarity=0.327  Sum_probs=199.0

Q ss_pred             ccccccCccccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCcc
Q 047285          113 KLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDL  192 (552)
Q Consensus       113 ~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~  192 (552)
                      .+++.+.  ...+.+|++|+++++.++.  + +.++.+++|++|++++|++++ +| .++++++|++|++++|.+..++ 
T Consensus        33 ~~~~~~~--~~~l~~l~~L~l~~~~I~~--l-~gl~~L~nL~~L~Ls~N~l~~-l~-~l~~L~~L~~L~L~~n~i~~i~-  104 (384)
T d2omza2          33 NVTDTVS--QTDLDQVTTLQADRLGIKS--I-DGVEYLNNLTQINFSNNQLTD-IT-PLKNLTKLVDILMNNNQIADIT-  104 (384)
T ss_dssp             STTSEEC--HHHHTTCCEEECCSSCCCC--C-TTGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCCCG-
T ss_pred             CCCCccC--HHHhCCCCEEECCCCCCCC--c-cccccCCCCCEEeCcCCcCCC-Cc-cccCCccccccccccccccccc-
Confidence            4444433  3567889999999999984  4 457889999999999999985 44 3999999999999999887643 


Q ss_pred             ccCCccccCCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCcc
Q 047285          193 HVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQ  272 (552)
Q Consensus       193 ~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  272 (552)
                            .++.+++|+.|+++++.+++...    ......+.......+.+........................     .
T Consensus       105 ------~l~~l~~L~~L~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~  169 (384)
T d2omza2         105 ------PLANLTNLTGLTLFNNQITDIDP----LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDL-----K  169 (384)
T ss_dssp             ------GGTTCTTCCEEECCSSCCCCCGG----GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCC-----G
T ss_pred             ------ccccccccccccccccccccccc----ccccccccccccccccccccccccccccccccccccccchh-----h
Confidence                  37889999999999998877432    23345556666555544332222111111111111111100     0


Q ss_pred             ccccccCCCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCC
Q 047285          273 YGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLEN  352 (552)
Q Consensus       273 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~  352 (552)
                         .+...+.........+...  .......+++++.+++++|.+++..|  +..+++|++|++++|.+++ ++.  +..
T Consensus       170 ---~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~-~~~--l~~  239 (384)
T d2omza2         170 ---PLANLTTLERLDISSNKVS--DISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-IGT--LAS  239 (384)
T ss_dssp             ---GGTTCTTCCEEECCSSCCC--CCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG--GGG
T ss_pred             ---hhccccccccccccccccc--cccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC-cch--hhc
Confidence               2223333344444444332  23344556666666666666655433  2345566666666666652 221  455


Q ss_pred             CCccCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCC
Q 047285          353 LTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFK  432 (552)
Q Consensus       353 l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~  432 (552)
                      +++|+.+++++|. +++..+  +..++                             +|++|+++++.+++..  .+..++
T Consensus       240 l~~L~~L~l~~n~-l~~~~~--~~~~~-----------------------------~L~~L~l~~~~l~~~~--~~~~~~  285 (384)
T d2omza2         240 LTNLTDLDLANNQ-ISNLAP--LSGLT-----------------------------KLTELKLGANQISNIS--PLAGLT  285 (384)
T ss_dssp             CTTCSEEECCSSC-CCCCGG--GTTCT-----------------------------TCSEEECCSSCCCCCG--GGTTCT
T ss_pred             ccccchhccccCc-cCCCCc--ccccc-----------------------------cCCEeeccCcccCCCC--cccccc
Confidence            6666666666665 443221  22222                             5555555555555332  244555


Q ss_pred             CCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEc
Q 047285          433 SLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSA  512 (552)
Q Consensus       433 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L  512 (552)
                      .++.+++++|++.+ + ..+..+++++.|++++|++++. + .+..+++|++|++++|++++ ++  .+.++++|++|++
T Consensus       286 ~l~~l~~~~n~l~~-~-~~~~~~~~l~~L~ls~n~l~~l-~-~l~~l~~L~~L~L~~n~l~~-l~--~l~~l~~L~~L~l  358 (384)
T d2omza2         286 ALTNLELNENQLED-I-SPISNLKNLTYLTLYFNNISDI-S-PVSSLTKLQRLFFANNKVSD-VS--SLANLTNINWLSA  358 (384)
T ss_dssp             TCSEEECCSSCCSC-C-GGGGGCTTCSEEECCSSCCSCC-G-GGGGCTTCCEEECCSSCCCC-CG--GGGGCTTCCEEEC
T ss_pred             cccccccccccccc-c-cccchhcccCeEECCCCCCCCC-c-ccccCCCCCEEECCCCCCCC-Ch--hHcCCCCCCEEEC
Confidence            55666666655543 1 2345555666666666655532 2 14455666666666665533 33  2555666666666


Q ss_pred             cCCeeeEEcCCCCcCcccccEEecCCC
Q 047285          513 SGNSLILKFNPNWVPPFQLETLQLRSC  539 (552)
Q Consensus       513 ~~n~~~~~~~~~~~~~~~L~~L~l~~n  539 (552)
                      ++|++++..|  +..+++|+.|++++|
T Consensus       359 ~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         359 GHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCCcCCCChh--hccCCCCCEeeCCCC
Confidence            6666554433  455556666666554

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=2.8e-25  Score=220.95  Aligned_cols=340  Identities=24%  Similarity=0.321  Sum_probs=235.8

Q ss_pred             CcEEEEEcCCCCccCCCCchhhcccCccccCccccccCccccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCC
Q 047285           82 GHVLQLSLQNPFSYLGGDLREVKAGSNYERSKLGGKVNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGA  161 (552)
Q Consensus        82 ~~v~~L~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~  161 (552)
                      ..++.|++++.                    ++.. + +.+..+++|++|++++|++++  +| .++++++|++|++++|
T Consensus        44 ~~l~~L~l~~~--------------------~I~~-l-~gl~~L~nL~~L~Ls~N~l~~--l~-~l~~L~~L~~L~L~~n   98 (384)
T d2omza2          44 DQVTTLQADRL--------------------GIKS-I-DGVEYLNNLTQINFSNNQLTD--IT-PLKNLTKLVDILMNNN   98 (384)
T ss_dssp             TTCCEEECCSS--------------------CCCC-C-TTGGGCTTCCEEECCSSCCCC--CG-GGTTCTTCCEEECCSS
T ss_pred             CCCCEEECCCC--------------------CCCC-c-cccccCCCCCEEeCcCCcCCC--Cc-cccCCccccccccccc
Confidence            46888999874                    3332 2 347889999999999999995  45 3999999999999999


Q ss_pred             cCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCC
Q 047285          162 KFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQ  241 (552)
Q Consensus       162 ~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~  241 (552)
                      ++.+. + .++++++|+.|+++++.++..+.       ......+.......+.+......  .................
T Consensus        99 ~i~~i-~-~l~~l~~L~~L~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~  167 (384)
T d2omza2          99 QIADI-T-PLANLTNLTGLTLFNNQITDIDP-------LKNLTNLNRLELSSNTISDISAL--SGLTSLQQLSFGNQVTD  167 (384)
T ss_dssp             CCCCC-G-GGTTCTTCCEEECCSSCCCCCGG-------GTTCTTCSEEEEEEEEECCCGGG--TTCTTCSEEEEEESCCC
T ss_pred             ccccc-c-ccccccccccccccccccccccc-------ccccccccccccccccccccccc--cccccccccccccccch
Confidence            99854 3 38999999999999988766543       34455666776666655543111  11111111111111111


Q ss_pred             CCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCC
Q 047285          242 LCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTT  321 (552)
Q Consensus       242 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~  321 (552)
                           ...+.............+.....  .   ....+++++.+++++|.+++..|  +...++|++|++++|.+++. 
T Consensus       168 -----~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~-  234 (384)
T d2omza2         168 -----LKPLANLTTLERLDISSNKVSDI--S---VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI-  234 (384)
T ss_dssp             -----CGGGTTCTTCCEEECCSSCCCCC--G---GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-
T ss_pred             -----hhhhccccccccccccccccccc--c---ccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc-
Confidence                 11222233333334433332221  1   45567888899999988876544  46678899999999988753 


Q ss_pred             CccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCcccccc
Q 047285          322 PGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDT  401 (552)
Q Consensus       322 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~  401 (552)
                       ..+..+++|+.+++++|.+++.. .  +..+++|+.|+++++. +++..+  +..                        
T Consensus       235 -~~l~~l~~L~~L~l~~n~l~~~~-~--~~~~~~L~~L~l~~~~-l~~~~~--~~~------------------------  283 (384)
T d2omza2         235 -GTLASLTNLTDLDLANNQISNLA-P--LSGLTKLTELKLGANQ-ISNISP--LAG------------------------  283 (384)
T ss_dssp             -GGGGGCTTCSEEECCSSCCCCCG-G--GTTCTTCSEEECCSSC-CCCCGG--GTT------------------------
T ss_pred             -chhhcccccchhccccCccCCCC-c--ccccccCCEeeccCcc-cCCCCc--ccc------------------------
Confidence             35677889999999999887533 2  6778899999999887 553221  222                        


Q ss_pred             ccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCC
Q 047285          402 FSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSH  481 (552)
Q Consensus       402 ~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  481 (552)
                           ++.++.++++.|.+++.  ..+..+++++.|++++|++++. + .+..+++|++|++++|++++ ++ .+.++++
T Consensus       284 -----~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l-~-~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~  352 (384)
T d2omza2         284 -----LTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDI-S-PVSSLTKLQRLFFANNKVSD-VS-SLANLTN  352 (384)
T ss_dssp             -----CTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCC-G-GGGGCTTCCEEECCSSCCCC-CG-GGGGCTT
T ss_pred             -----ccccccccccccccccc--cccchhcccCeEECCCCCCCCC-c-ccccCCCCCEEECCCCCCCC-Ch-hHcCCCC
Confidence                 33678888888887753  3467788888999998888753 3 37788889999999998874 44 5788889


Q ss_pred             CCeeeCCCcccceecCHHhhhcCCCCCEEEccCC
Q 047285          482 LEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGN  515 (552)
Q Consensus       482 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n  515 (552)
                      |++|++++|++++..|   +.++++|++|+|++|
T Consensus       353 L~~L~l~~N~l~~l~~---l~~l~~L~~L~L~~N  383 (384)
T d2omza2         353 INWLSAGHNQISDLTP---LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CCEEECCSSCCCBCGG---GTTCTTCSEEECCCE
T ss_pred             CCEEECCCCcCCCChh---hccCCCCCEeeCCCC
Confidence            9999999998876443   788889999998887

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=1.8e-23  Score=200.81  Aligned_cols=227  Identities=24%  Similarity=0.226  Sum_probs=139.4

Q ss_pred             ccCccccCCCCCCEEeCCCCcCCCCccC-cccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccC
Q 047285          117 KVNPSLVDLKHLIHLDLSGNDFEGIQIP-KYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVD  195 (552)
Q Consensus       117 ~~~~~l~~l~~L~~L~Ls~n~~~~~~~p-~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~  195 (552)
                      .+|..+.  +++++|+|++|+++.  +| ..|.++++|++|++++|.+....|..|.++++|++|++++|.++.+|.   
T Consensus        24 ~lP~~l~--~~l~~L~Ls~N~i~~--l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~---   96 (305)
T d1xkua_          24 KVPKDLP--PDTALLDLQNNKITE--IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPE---   96 (305)
T ss_dssp             SCCCSCC--TTCCEEECCSSCCCC--BCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCS---
T ss_pred             ccCCCCC--CCCCEEECcCCcCCC--cChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCcc---
Confidence            3455553  689999999999994  56 478999999999999999997778889999999999999998887763   


Q ss_pred             CccccCCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCC--CCCCCcccCCCCCceeecCCCCCCCCCccc
Q 047285          196 SLSWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLC--HFPPLLSANFSSLKALHLAINNFDNSLFQY  273 (552)
Q Consensus       196 ~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~  273 (552)
                           ...+.++.|+++.|.+....  ...+.....++.+....+...  ...+..+..+++|+.+++++|.+.... . 
T Consensus        97 -----~~~~~l~~L~~~~n~l~~l~--~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~-~-  167 (305)
T d1xkua_          97 -----KMPKTLQELRVHENEITKVR--KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP-Q-  167 (305)
T ss_dssp             -----SCCTTCCEEECCSSCCCBBC--HHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC-S-
T ss_pred             -----chhhhhhhhhccccchhhhh--hhhhhccccccccccccccccccCCCccccccccccCccccccCCccccC-c-
Confidence                 23456777777777776632  233445566666666665432  223344455555555555555443221 1 


Q ss_pred             cccccCCCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCC
Q 047285          274 GSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENL  353 (552)
Q Consensus       274 ~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l  353 (552)
                        .  .+++|++|++++|...+..+..+..++.+++|++++|.+++..+..+.++++|++|++++|.++ .+|.. +..+
T Consensus       168 --~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~-l~~l  241 (305)
T d1xkua_         168 --G--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGG-LADH  241 (305)
T ss_dssp             --S--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTT-TTTC
T ss_pred             --c--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccc-cccc
Confidence              1  1345555555555555444445555555555555555555444444444555555555555444 33332 4444


Q ss_pred             CccCEEeCCCCC
Q 047285          354 TSIETLDLSGNS  365 (552)
Q Consensus       354 ~~L~~L~l~~n~  365 (552)
                      ++|++|++++|+
T Consensus       242 ~~L~~L~Ls~N~  253 (305)
T d1xkua_         242 KYIQVVYLHNNN  253 (305)
T ss_dssp             SSCCEEECCSSC
T ss_pred             cCCCEEECCCCc
Confidence            555555555543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=1.6e-22  Score=194.03  Aligned_cols=226  Identities=21%  Similarity=0.220  Sum_probs=115.9

Q ss_pred             cCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCCccEEeccCccccccCchhhhccc
Q 047285          226 TNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQIPIGLRNLT  305 (552)
Q Consensus       226 ~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~  305 (552)
                      +.++++|++|++++|.+....+..|.++++|+.|++++|+++.....      ....++.|++.+|.+.+..+..+....
T Consensus        51 f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~------~~~~l~~L~~~~n~l~~l~~~~~~~~~  124 (305)
T d1xkua_          51 FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK------MPKTLQELRVHENEITKVRKSVFNGLN  124 (305)
T ss_dssp             TTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSS------CCTTCCEEECCSSCCCBBCHHHHTTCT
T ss_pred             hhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccc------hhhhhhhhhccccchhhhhhhhhhccc
Confidence            34444555555555555555555555555555555555554432211      124556666666666544444455555


Q ss_pred             CCcEEeccCCCCC--CCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCCCCCCCCCchhHhhcccCce
Q 047285          306 SLRHLDLRFNYFN--STTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTS  383 (552)
Q Consensus       306 ~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~  383 (552)
                      .+..++...+...  ...+..+..+++|+.+++++|.+. .++..   .+++|+.|++++|. ..+..+..+..++    
T Consensus       125 ~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~---~~~~L~~L~l~~n~-~~~~~~~~~~~~~----  195 (305)
T d1xkua_         125 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQG---LPPSLTELHLDGNK-ITKVDAASLKGLN----  195 (305)
T ss_dssp             TCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSS---CCTTCSEEECTTSC-CCEECTGGGTTCT----
T ss_pred             cccccccccccccccCCCccccccccccCccccccCCcc-ccCcc---cCCccCEEECCCCc-CCCCChhHhhccc----
Confidence            5566665555332  222334445555556665555544 23322   23455666666554 4434343333332    


Q ss_pred             eecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeC
Q 047285          384 VDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDL  463 (552)
Q Consensus       384 l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  463 (552)
                                               .+++|++++|.+++..+..+.++++|++|+|++|+++ .+|.++..+++|++|++
T Consensus       196 -------------------------~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~L  249 (305)
T d1xkua_         196 -------------------------NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYL  249 (305)
T ss_dssp             -------------------------TCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEEC
T ss_pred             -------------------------cccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEEC
Confidence                                     4556666666666555555566666666666666665 45555666666666666


Q ss_pred             CCCcCCccCcc------cccCCCCCCeeeCCCccc
Q 047285          464 SNNMLNGFIPL------SLGKLSHLEYLDLSNNKL  492 (552)
Q Consensus       464 ~~n~l~~~~~~------~~~~l~~L~~L~L~~n~l  492 (552)
                      ++|+++..-..      .....++|+.|+|++|++
T Consensus       250 s~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~  284 (305)
T d1xkua_         250 HNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV  284 (305)
T ss_dssp             CSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             CCCccCccChhhccCcchhcccCCCCEEECCCCcC
Confidence            66665522111      122345555555555554

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2e-23  Score=198.18  Aligned_cols=232  Identities=23%  Similarity=0.216  Sum_probs=144.5

Q ss_pred             cccCCCCccEEeccCccccccCchhhhcccCCcEEecc-CCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCC
Q 047285          276 WVFGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLR-FNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLT  354 (552)
Q Consensus       276 ~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~-~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~  354 (552)
                      .+..+++|++|++++|.+....+..+..++.++.+... .+.++...+..+.++++|++|++++|.+.+ ++...+...+
T Consensus        51 ~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~~  129 (284)
T d1ozna_          51 SFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQE-LGPGLFRGLA  129 (284)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCT
T ss_pred             HhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEecCCccccc-ccccccchhc
Confidence            34445555555555555554444455555556555543 334444445556666666666666666652 3333356666


Q ss_pred             ccCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCC
Q 047285          355 SIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSL  434 (552)
Q Consensus       355 ~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L  434 (552)
                      +|+.+++++|. +++..+..|..++                             +|+.|++++|.+++..+..+.++++|
T Consensus       130 ~L~~l~l~~N~-l~~i~~~~f~~~~-----------------------------~L~~L~l~~N~l~~l~~~~f~~l~~L  179 (284)
T d1ozna_         130 ALQYLYLQDNA-LQALPDDTFRDLG-----------------------------NLTHLFLHGNRISSVPERAFRGLHSL  179 (284)
T ss_dssp             TCCEEECCSSC-CCCCCTTTTTTCT-----------------------------TCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             ccchhhhcccc-ccccChhHhcccc-----------------------------chhhcccccCcccccchhhhcccccc
Confidence            77777777776 5544344443333                             67777777777777677777778888


Q ss_pred             cEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccC
Q 047285          435 HTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASG  514 (552)
Q Consensus       435 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~  514 (552)
                      +.+++++|++++..|..|..+++|++|++++|.+.+..+..+..+++|++|++++|++.+..+...+.  ..++.+....
T Consensus       180 ~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~~l~--~~l~~~~~~~  257 (284)
T d1ozna_         180 DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLW--AWLQKFRGSS  257 (284)
T ss_dssp             CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHH--HHHHHCCSEE
T ss_pred             chhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccchHHH--HHHHhCcCCC
Confidence            88888888887777777888888888888888887766677777888888888888776654431111  1233445556


Q ss_pred             CeeeEEcCCCCcCcccccEEecCCCCCCC
Q 047285          515 NSLILKFNPNWVPPFQLETLQLRSCHLGP  543 (552)
Q Consensus       515 n~~~~~~~~~~~~~~~L~~L~l~~n~~~~  543 (552)
                      +++.+..|..+..   ....+++.++++|
T Consensus       258 ~~~~C~~p~~l~g---~~l~~l~~~~l~g  283 (284)
T d1ozna_         258 SEVPCSLPQRLAG---RDLKRLAANDLQG  283 (284)
T ss_dssp             CCCBEEESGGGTT---CBGGGSCGGGSCC
T ss_pred             CceEeCCchHHcC---CccccCCHHHCCC
Confidence            6777777765543   3444555555554

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.4e-23  Score=197.59  Aligned_cols=238  Identities=21%  Similarity=0.176  Sum_probs=183.8

Q ss_pred             CCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEe
Q 047285          281 RNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLD  360 (552)
Q Consensus       281 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~  360 (552)
                      +++++|+|++|.+++..+..|..+++|++|++++|.+....+..+..++.++.+....+.....++...+.++++|++|+
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence            45677778777777555556777788888888888777777777777777777766543333345444477777788888


Q ss_pred             CCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECC
Q 047285          361 LSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELG  440 (552)
Q Consensus       361 l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~  440 (552)
                      +++|. +....+..+.                             ...+|+.+++++|.+++..+..+..+++|+.|+++
T Consensus       112 l~~n~-~~~~~~~~~~-----------------------------~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~  161 (284)
T d1ozna_         112 LDRCG-LQELGPGLFR-----------------------------GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLH  161 (284)
T ss_dssp             CTTSC-CCCCCTTTTT-----------------------------TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             cCCcc-cccccccccc-----------------------------hhcccchhhhccccccccChhHhccccchhhcccc
Confidence            77776 4433333332                             23489999999999998878889999999999999


Q ss_pred             CCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEE
Q 047285          441 HNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILK  520 (552)
Q Consensus       441 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~  520 (552)
                      +|++.+..+..+..+++|+++++++|.+++..|..+.++++|++|++++|++.+..+. .+..+++|++|++++|++.+.
T Consensus       162 ~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~-~~~~~~~L~~L~l~~N~l~C~  240 (284)
T d1ozna_         162 GNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTE-ALAPLRALQYLRLNDNPWVCD  240 (284)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHH-HHTTCTTCCEEECCSSCEECS
T ss_pred             cCcccccchhhhccccccchhhhhhccccccChhHhhhhhhccccccccccccccccc-ccccccccCEEEecCCCCCCC
Confidence            9999987888899999999999999999988899999999999999999999765555 899999999999999999987


Q ss_pred             cCCCCcCcccccEEecCCCCCCCCCCcccc
Q 047285          521 FNPNWVPPFQLETLQLRSCHLGPHFPSWLH  550 (552)
Q Consensus       521 ~~~~~~~~~~L~~L~l~~n~~~~~iP~~l~  550 (552)
                      ++..+ -...++.+....+++....|..+.
T Consensus       241 C~~~~-l~~~l~~~~~~~~~~~C~~p~~l~  269 (284)
T d1ozna_         241 CRARP-LWAWLQKFRGSSSEVPCSLPQRLA  269 (284)
T ss_dssp             GGGHH-HHHHHHHCCSEECCCBEEESGGGT
T ss_pred             ccchH-HHHHHHhCcCCCCceEeCCchHHc
Confidence            65321 123466667777777767776653

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2e-21  Score=182.13  Aligned_cols=200  Identities=24%  Similarity=0.253  Sum_probs=130.6

Q ss_pred             cCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCC
Q 047285          123 VDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSG  202 (552)
Q Consensus       123 ~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~  202 (552)
                      .+...+...+.+++.++  .+|..+.  +++++|+|++|++++..+..|.++++|++|++++|.++.++.       ++.
T Consensus         7 ~~~~~~~~v~C~~~~L~--~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-------~~~   75 (266)
T d1p9ag_           7 SKVASHLEVNCDKRNLT--ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-------DGT   75 (266)
T ss_dssp             ECSTTCCEEECTTSCCS--SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-------CSC
T ss_pred             cccCCCeEEEccCCCCC--eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc-------ccc
Confidence            45666777899999888  5787664  579999999999986555778999999999999998876542       456


Q ss_pred             CCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCC
Q 047285          203 LYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRN  282 (552)
Q Consensus       203 l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~  282 (552)
                      +++|++|++++|++...   +..+..+++|++|++++|.+.+..+..+..+.+++.|++++|.+...             
T Consensus        76 l~~L~~L~Ls~N~l~~~---~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l-------------  139 (266)
T d1p9ag_          76 LPVLGTLDLSHNQLQSL---PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL-------------  139 (266)
T ss_dssp             CTTCCEEECCSSCCSSC---CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCC-------------
T ss_pred             ccccccccccccccccc---ccccccccccccccccccccceeecccccccccccccccccccccee-------------
Confidence            77888888888877653   33455667777777777776666655555555555555555544433             


Q ss_pred             ccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCC
Q 047285          283 LVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLS  362 (552)
Q Consensus       283 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~  362 (552)
                                    .+..+..+++++.+++++|++++..+..+..+++|++|++++|+++ .+|.. +..+++|+.|+++
T Consensus       140 --------------~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~-~~~~~~L~~L~L~  203 (266)
T d1p9ag_         140 --------------PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKG-FFGSHLLPFAFLH  203 (266)
T ss_dssp             --------------CTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTT-TTTTCCCSEEECC
T ss_pred             --------------ccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChh-HCCCCCCCEEEec
Confidence                          3333444455555555555555544455555555555555555555 45544 4445556666666


Q ss_pred             CCC
Q 047285          363 GNS  365 (552)
Q Consensus       363 ~n~  365 (552)
                      +|+
T Consensus       204 ~Np  206 (266)
T d1p9ag_         204 GNP  206 (266)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            655

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.7e-21  Score=182.50  Aligned_cols=84  Identities=25%  Similarity=0.181  Sum_probs=45.0

Q ss_pred             CCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCC
Q 047285          409 ALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLS  488 (552)
Q Consensus       409 ~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  488 (552)
                      ++++|++++|.++...+..+..+++|+.+++++|++++..+..+..+++|++|+|++|+++ .+|..+..+++|+.|+|+
T Consensus       125 ~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~  203 (266)
T d1p9ag_         125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLH  203 (266)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECC
T ss_pred             ccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEec
Confidence            4555555555555444444455555555555555555444444555555555555555555 455555555555555555


Q ss_pred             Ccccc
Q 047285          489 NNKLN  493 (552)
Q Consensus       489 ~n~l~  493 (552)
                      +|++.
T Consensus       204 ~Np~~  208 (266)
T d1p9ag_         204 GNPWL  208 (266)
T ss_dssp             SCCBC
T ss_pred             CCCCC
Confidence            55543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.83  E-value=5.7e-18  Score=165.24  Aligned_cols=198  Identities=21%  Similarity=0.214  Sum_probs=123.9

Q ss_pred             CCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCCCC
Q 047285          126 KHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYM  205 (552)
Q Consensus       126 ~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~  205 (552)
                      .++++|||+++.++  .+|+.   .++|++|++++|+++ .+|..+   .+|++|++++|.++.++.       +  .+.
T Consensus        38 ~~l~~LdLs~~~L~--~lp~~---~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~~l~~-------l--p~~   99 (353)
T d1jl5a_          38 RQAHELELNNLGLS--SLPEL---PPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLKALSD-------L--PPL   99 (353)
T ss_dssp             HTCSEEECTTSCCS--CCCSC---CTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCSCCCS-------C--CTT
T ss_pred             cCCCEEEeCCCCCC--CCCCC---CCCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccchhhh-------h--ccc
Confidence            47899999999998  57864   578999999999998 678654   579999999998776542       1  146


Q ss_pred             CCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCCccE
Q 047285          206 LEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVF  285 (552)
Q Consensus       206 L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~  285 (552)
                      |++|++++|.+...+.    ...+++|++|+++++.+...+..    ...+..+.+..+.....  .   .+..++.++.
T Consensus       100 L~~L~L~~n~l~~lp~----~~~l~~L~~L~l~~~~~~~~~~~----~~~l~~l~~~~~~~~~~--~---~l~~l~~l~~  166 (353)
T d1jl5a_         100 LEYLGVSNNQLEKLPE----LQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNNQLEEL--P---ELQNLPFLTA  166 (353)
T ss_dssp             CCEEECCSSCCSSCCC----CTTCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSSC--C---CCTTCTTCCE
T ss_pred             cccccccccccccccc----hhhhccceeeccccccccccccc----cccccchhhcccccccc--c---ccccccccee
Confidence            8899999988876432    45678888888888877654432    34455555544433221  1   3445667777


Q ss_pred             EeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCCC
Q 047285          286 IDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNS  365 (552)
Q Consensus       286 L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~  365 (552)
                      +++++|.... .+.   .....+.+...++.+.. . ..+..++.|+.+++++|... .++    ....++..+.+..+.
T Consensus       167 L~l~~n~~~~-~~~---~~~~~~~l~~~~~~~~~-~-~~~~~l~~L~~l~l~~n~~~-~~~----~~~~~l~~~~~~~~~  235 (353)
T d1jl5a_         167 IYADNNSLKK-LPD---LPLSLESIVAGNNILEE-L-PELQNLPFLTTIYADNNLLK-TLP----DLPPSLEALNVRDNY  235 (353)
T ss_dssp             EECCSSCCSS-CCC---CCTTCCEEECCSSCCSS-C-CCCTTCTTCCEEECCSSCCS-SCC----SCCTTCCEEECCSSC
T ss_pred             cccccccccc-ccc---ccccccccccccccccc-c-cccccccccccccccccccc-ccc----ccccccccccccccc
Confidence            7777766542 221   11223444444443332 1 22445666667766666544 222    123445566666554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.83  E-value=9.7e-18  Score=163.61  Aligned_cols=118  Identities=24%  Similarity=0.266  Sum_probs=54.6

Q ss_pred             CCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCCCC
Q 047285          126 KHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYM  205 (552)
Q Consensus       126 ~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~  205 (552)
                      ++|++|++++|+++  .+|+.+   .+|+.|++++|+++ .++..   .+.|++|++++|.+..+|.       +..+++
T Consensus        58 ~~L~~L~Ls~N~l~--~lp~~~---~~L~~L~l~~n~l~-~l~~l---p~~L~~L~L~~n~l~~lp~-------~~~l~~  121 (353)
T d1jl5a_          58 PHLESLVASCNSLT--ELPELP---QSLKSLLVDNNNLK-ALSDL---PPLLEYLGVSNNQLEKLPE-------LQNSSF  121 (353)
T ss_dssp             TTCSEEECCSSCCS--SCCCCC---TTCCEEECCSSCCS-CCCSC---CTTCCEEECCSSCCSSCCC-------CTTCTT
T ss_pred             CCCCEEECCCCCCc--ccccch---hhhhhhhhhhcccc-hhhhh---ccccccccccccccccccc-------hhhhcc
Confidence            45555555555555  345432   34555555555554 22211   1245555555555544331       344555


Q ss_pred             CCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCC
Q 047285          206 LEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFD  267 (552)
Q Consensus       206 L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~  267 (552)
                      |++|+++++.+...+.      ....+..+.+..+....  ...+..++.++.+.++.+...
T Consensus       122 L~~L~l~~~~~~~~~~------~~~~l~~l~~~~~~~~~--~~~l~~l~~l~~L~l~~n~~~  175 (353)
T d1jl5a_         122 LKIIDVDNNSLKKLPD------LPPSLEFIAAGNNQLEE--LPELQNLPFLTAIYADNNSLK  175 (353)
T ss_dssp             CCEEECCSSCCSCCCC------CCTTCCEEECCSSCCSS--CCCCTTCTTCCEEECCSSCCS
T ss_pred             ceeecccccccccccc------ccccccchhhccccccc--cccccccccceeccccccccc
Confidence            5555555555443211      22344455544433322  222344455555555555443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.5e-22  Score=205.83  Aligned_cols=393  Identities=20%  Similarity=0.137  Sum_probs=227.9

Q ss_pred             CCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCC----CCccccCCCCCCCEEeccCCCCCCCccccCCcc-cc
Q 047285          126 KHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAG----MIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLS-WL  200 (552)
Q Consensus       126 ~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~----~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l  200 (552)
                      .+|++||++++++++..+.+.+..+++|++|+|++|+++.    .++..+..+++|++||+++|.++..+..  .+. .+
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~--~l~~~l   79 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVH--CVLQGL   79 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHH--HHHHTT
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHH--HHHHHH
Confidence            3678999999999875556667788999999999998873    3455677899999999999977532111  011 12


Q ss_pred             C-CCCCCCEEeCCCCcCCCC--cchhhhcCCCCCCCEEEcCCCCCCCCCCCccc-----CCCCCceeecCCCCCCCCC-c
Q 047285          201 S-GLYMLEHLDLSQMNLSKA--SDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSA-----NFSSLKALHLAINNFDNSL-F  271 (552)
Q Consensus       201 ~-~l~~L~~L~ls~n~~~~~--~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~-----~l~~L~~L~l~~n~~~~~~-~  271 (552)
                      . ...+|++|++++|++++.  ..++..+..+++|++|++++|.+.+.....+.     ................... .
T Consensus        80 ~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  159 (460)
T d1z7xw1          80 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE  159 (460)
T ss_dssp             CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred             hcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhc
Confidence            2 345799999999998754  23456678899999999999987643211111     1112223333332222111 1


Q ss_pred             cccccccCCCCccEEeccCccccccC----chhhh-cccCCcEEeccCCCCCCCC----CccCCCCCCCCEEEccCccce
Q 047285          272 QYGSWVFGLRNLVFIDLSSNQFQGQI----PIGLR-NLTSLRHLDLRFNYFNSTT----PGWLSKFNDLEFLSVAWNSLQ  342 (552)
Q Consensus       272 ~~~~~~~~l~~L~~L~L~~n~~~~~~----~~~l~-~l~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~l~~n~l~  342 (552)
                      .....+.....++.++++++......    ...+. .......+++..+.+....    ...+...+.++.+++.+|.+.
T Consensus       160 ~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~  239 (460)
T d1z7xw1         160 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG  239 (460)
T ss_dssp             HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhcccc
Confidence            11112335577888888887654221    11111 2234567777777654321    122345678888888888654


Q ss_pred             ee----cCccccCCCCccCEEeCCCCCCCCCCCchhH-hhcccCceeecccccCCCCCccccccccccCCCCCCEEEccC
Q 047285          343 GT----ISSVGLENLTSIETLDLSGNSKLGGKIPTSF-ARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSI  417 (552)
Q Consensus       343 ~~----~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~-~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~  417 (552)
                      ..    ...........++.+++++|. +.......+ ..+.                          ..+.++.+++++
T Consensus       240 ~~~~~~~~~~~~~~~~~l~~l~l~~n~-i~~~~~~~~~~~l~--------------------------~~~~l~~l~l~~  292 (460)
T d1z7xw1         240 DVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCRVLR--------------------------AKESLKELSLAG  292 (460)
T ss_dssp             HHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHH--------------------------HCTTCCEEECTT
T ss_pred             ccccchhhccccccccccccccccccc-cccccccccccccc--------------------------cccccccccccc
Confidence            21    112224556788999999887 442221111 1111                          123566777777


Q ss_pred             CcCcccCchhh-----cCCCCCcEEECCCCcccCCCcc----cccCCCCCCEEeCCCCcCCcc----Cccccc-CCCCCC
Q 047285          418 CQISGHLTNQL-----LQFKSLHTLELGHNSLFGPLPP----ALGELSSLKKLDLSNNMLNGF----IPLSLG-KLSHLE  483 (552)
Q Consensus       418 n~~~~~~~~~l-----~~l~~L~~L~L~~n~l~~~~~~----~l~~l~~L~~L~L~~n~l~~~----~~~~~~-~l~~L~  483 (552)
                      |.++......+     .....|+.+++++|.++.....    .+...++|++|+|++|++++.    ++..+. ..+.|+
T Consensus       293 n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~  372 (460)
T d1z7xw1         293 NELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLR  372 (460)
T ss_dssp             CCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCC
T ss_pred             ccccccccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCC
Confidence            76654322221     1234677777777766543222    233455677777777776532    223332 355677


Q ss_pred             eeeCCCccccee----cCHHhhhcCCCCCEEEccCCeeeEEcCCCC----c-CcccccEEecCCCCCCCCCCcc
Q 047285          484 YLDLSNNKLNAS----LSEIHFVNLTKLTWFSASGNSLILKFNPNW----V-PPFQLETLQLRSCHLGPHFPSW  548 (552)
Q Consensus       484 ~L~L~~n~l~~~----~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~----~-~~~~L~~L~l~~n~~~~~iP~~  548 (552)
                      +|+|++|++++.    +.+ .+..+++|++|+|++|+++......+    . ....|+.|++.+|.+.+..+..
T Consensus       373 ~L~Ls~n~i~~~~~~~l~~-~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~  445 (460)
T d1z7xw1         373 VLWLADCDVSDSSCSSLAA-TLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDR  445 (460)
T ss_dssp             EEECTTSCCCHHHHHHHHH-HHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHH
T ss_pred             EEECCCCCCChHHHHHHHH-HHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHHH
Confidence            777777777542    223 45566777777777777664322111    1 2235777777777776544433

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=1.5e-17  Score=151.55  Aligned_cols=190  Identities=25%  Similarity=0.371  Sum_probs=119.1

Q ss_pred             cccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCcccc
Q 047285          121 SLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWL  200 (552)
Q Consensus       121 ~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l  200 (552)
                      .+.++.+|++|++++|.++.  ++ .++.+++|++|++++|++++..|  +.++++|+++++++|.++.++       .+
T Consensus        36 ~~~~l~~L~~L~l~~~~i~~--l~-~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~i~-------~l  103 (227)
T d1h6ua2          36 TQADLDGITTLSAFGTGVTT--IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS-------AI  103 (227)
T ss_dssp             CHHHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG-------GG
T ss_pred             CHHHcCCcCEEECCCCCCCc--ch-hHhcCCCCcEeecCCceeecccc--ccccccccccccccccccccc-------cc
Confidence            35678889999999998884  53 57889999999999998875433  788899999999888765543       36


Q ss_pred             CCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCC
Q 047285          201 SGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGL  280 (552)
Q Consensus       201 ~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l  280 (552)
                      ..+++|+.++++++......    .+...+.++.+.++.+.+....+  +..+++|+.|++++|.+.+..     .+.++
T Consensus       104 ~~l~~L~~l~l~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~-----~l~~l  172 (227)
T d1h6ua2         104 AGLQSIKTLDLTSTQITDVT----PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLT-----PLANL  172 (227)
T ss_dssp             TTCTTCCEEECTTSCCCCCG----GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-----GGTTC
T ss_pred             cccccccccccccccccccc----hhccccchhhhhchhhhhchhhh--hccccccccccccccccccch-----hhccc
Confidence            77888888888887766532    23456677777777666554332  344555666666555544321     23445


Q ss_pred             CCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEcc
Q 047285          281 RNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVA  337 (552)
Q Consensus       281 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~  337 (552)
                      ++|++|++++|++++ ++ .++.+++|++|++++|++++..|  +.++++|++|+++
T Consensus       173 ~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~L~ls  225 (227)
T d1h6ua2         173 SKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT  225 (227)
T ss_dssp             TTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEE
T ss_pred             ccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCCCCcc--cccCCCCCEEEee
Confidence            555555555555543 22 24455555555555555543221  4445555555543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=1.3e-17  Score=151.89  Aligned_cols=188  Identities=26%  Similarity=0.370  Sum_probs=116.2

Q ss_pred             cCCCCccEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccC
Q 047285          278 FGLRNLVFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIE  357 (552)
Q Consensus       278 ~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~  357 (552)
                      ..+.+|+.|++.+|.++. + ..+..+++|++|++++|.+++..+  +..+++++++++++|.++ .++.  +..+++|+
T Consensus        38 ~~l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~-~i~~--l~~l~~L~  110 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVSA--IAGLQSIK  110 (227)
T ss_dssp             HHHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCGG--GTTCTTCC
T ss_pred             HHcCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeecccc--cccccccccccccccccc-cccc--cccccccc
Confidence            345667777777776663 3 346667777777777777665433  566677777777776665 3332  55667777


Q ss_pred             EEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEE
Q 047285          358 TLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTL  437 (552)
Q Consensus       358 ~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L  437 (552)
                      .++++++. ..+..  .+.                             ..+.++.+.++++.+....  .+..+++|+.|
T Consensus       111 ~l~l~~~~-~~~~~--~~~-----------------------------~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L  156 (227)
T d1h6ua2         111 TLDLTSTQ-ITDVT--PLA-----------------------------GLSNLQVLYLDLNQITNIS--PLAGLTNLQYL  156 (227)
T ss_dssp             EEECTTSC-CCCCG--GGT-----------------------------TCTTCCEEECCSSCCCCCG--GGGGCTTCCEE
T ss_pred             cccccccc-ccccc--hhc-----------------------------cccchhhhhchhhhhchhh--hhccccccccc
Confidence            77776665 32211  111                             2235666777766665432  35566777777


Q ss_pred             ECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEcc
Q 047285          438 ELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSAS  513 (552)
Q Consensus       438 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~  513 (552)
                      ++++|.+.+.  ..++++++|++|++++|++++ ++. +.++++|++|++++|++++ ++.  ++++++|++|+++
T Consensus       157 ~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~-l~~-l~~l~~L~~L~Ls~N~lt~-i~~--l~~l~~L~~L~ls  225 (227)
T d1h6ua2         157 SIGNAQVSDL--TPLANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQISD-VSP--LANTSNLFIVTLT  225 (227)
T ss_dssp             ECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCCCB-CGG--GTTCTTCCEEEEE
T ss_pred             cccccccccc--hhhcccccceecccCCCccCC-Chh-hcCCCCCCEEECcCCcCCC-Ccc--cccCCCCCEEEee
Confidence            7777776532  236677777777777777763 332 5667777777777777754 332  6677777777775

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=3.8e-17  Score=150.44  Aligned_cols=221  Identities=17%  Similarity=0.101  Sum_probs=112.1

Q ss_pred             cEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCC
Q 047285          284 VFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSG  363 (552)
Q Consensus       284 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~  363 (552)
                      +.++.++..++ .+|..+.  +++++|++++|.++...+..|.++++|++|++++|.+.+.++...+..++.++++.+..
T Consensus        11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            34455554444 4444332  45666666666665544455666666666666666665555554455666666666554


Q ss_pred             CCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCc-hhhcCCCCCcEEECCCC
Q 047285          364 NSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLT-NQLLQFKSLHTLELGHN  442 (552)
Q Consensus       364 n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~-~~l~~l~~L~~L~L~~n  442 (552)
                      +..+....+..|..++                             +|+++++++|.+....+ ..+..+..+..+...++
T Consensus        88 ~n~l~~~~~~~~~~l~-----------------------------~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~  138 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLP-----------------------------NLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNI  138 (242)
T ss_dssp             CTTCCEECTTSEECCT-----------------------------TCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCT
T ss_pred             cccccccccccccccc-----------------------------cccccccchhhhccccccccccccccccccccccc
Confidence            3324333333333333                             55555555555543222 12233344444444555


Q ss_pred             cccCCCcccccCCC-CCCEEeCCCCcCCccCcccccCCCCCCee-eCCCcccceecCHHhhhcCCCCCEEEccCCeeeEE
Q 047285          443 SLFGPLPPALGELS-SLKKLDLSNNMLNGFIPLSLGKLSHLEYL-DLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILK  520 (552)
Q Consensus       443 ~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L-~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~  520 (552)
                      ++....+..+..++ .++.|++++|+++. ++......+++..+ ++++|++ ..+|...|.++++|++|++++|++...
T Consensus       139 ~l~~i~~~~~~~~~~~l~~L~l~~n~l~~-i~~~~~~~~~l~~~~~l~~n~l-~~l~~~~f~~l~~L~~L~Ls~N~l~~l  216 (242)
T d1xwdc1         139 NIHTIERNSFVGLSFESVILWLNKNGIQE-IHNCAFNGTQLDELNLSDNNNL-EELPNDVFHGASGPVILDISRTRIHSL  216 (242)
T ss_dssp             TCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTTTTTCCEEEEECTTCTTC-CCCCTTTTTTSCCCSEEECTTSCCCCC
T ss_pred             ccccccccccccccccceeeecccccccc-cccccccchhhhcccccccccc-ccccHHHhcCCCCCCEEECCCCcCCcc
Confidence            55433333444332 56666666666653 33333334444444 3444555 344443566667777777777666633


Q ss_pred             cCCCCcCcccccEEecCC
Q 047285          521 FNPNWVPPFQLETLQLRS  538 (552)
Q Consensus       521 ~~~~~~~~~~L~~L~l~~  538 (552)
                      -+..+..+.+|+.+++.+
T Consensus       217 ~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         217 PSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             CSSSCTTCCEEESSSEES
T ss_pred             CHHHHcCCcccccCcCCC
Confidence            333455555555555544

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.7e-19  Score=182.89  Aligned_cols=393  Identities=22%  Similarity=0.151  Sum_probs=235.7

Q ss_pred             cEEEEEcCCCCccCCCCchhhcccCccccCccccc-cCccccCCCCCCEEeCCCCcCCCC---ccCcccCCCCCCCEEeC
Q 047285           83 HVLQLSLQNPFSYLGGDLREVKAGSNYERSKLGGK-VNPSLVDLKHLIHLDLSGNDFEGI---QIPKYLGSLENLRYLNL  158 (552)
Q Consensus        83 ~v~~L~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~-~~~~l~~l~~L~~L~Ls~n~~~~~---~~p~~~~~l~~L~~L~L  158 (552)
                      .+..||++..                    ++++. +..-+..++++++|+|++|.++..   .+...+..+++|++|+|
T Consensus         3 ~l~~ld~~~~--------------------~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdL   62 (460)
T d1z7xw1           3 DIQSLDIQCE--------------------ELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL   62 (460)
T ss_dssp             EEEEEEEESC--------------------CCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEEC
T ss_pred             CCCEEEeeCC--------------------cCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEEC
Confidence            4678888763                    55442 233456789999999999988742   23455678999999999


Q ss_pred             CCCcCCCC----CccccC-CCCCCCEEeccCCCCCCCccccCCc-cccCCCCCCCEEeCCCCcCCCCc--chhhhc-CCC
Q 047285          159 SGAKFAGM----IPLQLG-NLSNLQYLDLSGTFLSNYDLHVDSL-SWLSGLYMLEHLDLSQMNLSKAS--DWLLVT-NSL  229 (552)
Q Consensus       159 ~~~~~~~~----lp~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~-~~l~~l~~L~~L~ls~n~~~~~~--~~~~~~-~~~  229 (552)
                      ++|+++..    +...+. ...+|++|++++|.+++....  .+ ..+..+++|++|++++|.+....  .....+ ...
T Consensus        63 s~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~--~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~  140 (460)
T d1z7xw1          63 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG--VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQ  140 (460)
T ss_dssp             TTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH--HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTT
T ss_pred             cCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccc--cccchhhccccccccccccccchhhhhhhhhhcccccc
Confidence            99988532    223332 345899999999987653311  11 23678899999999999876421  111112 223


Q ss_pred             CCCCEEEcCCCCCCCCCC----CcccCCCCCceeecCCCCCCCCCcc-ccccc-cCCCCccEEeccCcccccc----Cch
Q 047285          230 PSLKVLKLTKCQLCHFPP----LLSANFSSLKALHLAINNFDNSLFQ-YGSWV-FGLRNLVFIDLSSNQFQGQ----IPI  299 (552)
Q Consensus       230 ~~L~~L~l~~n~~~~~~~----~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~-~~l~~L~~L~L~~n~~~~~----~~~  299 (552)
                      ..................    ..+.....++.++++.+........ ....+ ........+++.++.+...    ...
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~  220 (460)
T d1z7xw1         141 CRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG  220 (460)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHH
T ss_pred             cccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccc
Confidence            334444444443321110    1123345677777776654322110 00011 1234566777777765422    123


Q ss_pred             hhhcccCCcEEeccCCCCCCC-----CCccCCCCCCCCEEEccCccceeecCc---cccCCCCccCEEeCCCCCCCCCCC
Q 047285          300 GLRNLTSLRHLDLRFNYFNST-----TPGWLSKFNDLEFLSVAWNSLQGTISS---VGLENLTSIETLDLSGNSKLGGKI  371 (552)
Q Consensus       300 ~l~~l~~L~~L~l~~n~l~~~-----~~~~l~~l~~L~~L~l~~n~l~~~~~~---~~l~~l~~L~~L~l~~n~~l~~~~  371 (552)
                      .+...+.++.+++.+|.+...     ..........++.+++++|.+......   ..+...+.++.+++++|. ++...
T Consensus       221 ~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~-i~~~~  299 (460)
T d1z7xw1         221 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE-LGDEG  299 (460)
T ss_dssp             HHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHHH
T ss_pred             cccccccccccchhhccccccccchhhccccccccccccccccccccccccccccccccccccccccccccccc-ccccc
Confidence            345678888999988876431     223344567899999998877632211   113456788999999987 55333


Q ss_pred             chhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCCcCcccCch----hhcCCCCCcEEECCCCcccCC
Q 047285          372 PTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTN----QLLQFKSLHTLELGHNSLFGP  447 (552)
Q Consensus       372 ~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~----~l~~l~~L~~L~L~~n~l~~~  447 (552)
                      ...+...-                        ......|+.+++++|.++.....    .+...++|++|+|++|++++.
T Consensus       300 ~~~l~~~l------------------------~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~  355 (460)
T d1z7xw1         300 ARLLCETL------------------------LEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA  355 (460)
T ss_dssp             HHHHHHHH------------------------TSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHH
T ss_pred             cchhhccc------------------------cccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCc
Confidence            33322110                        00123678888888877655333    334456788888888887642


Q ss_pred             ----Cccccc-CCCCCCEEeCCCCcCCcc----CcccccCCCCCCeeeCCCcccceecCHH---hhh-cCCCCCEEEccC
Q 047285          448 ----LPPALG-ELSSLKKLDLSNNMLNGF----IPLSLGKLSHLEYLDLSNNKLNASLSEI---HFV-NLTKLTWFSASG  514 (552)
Q Consensus       448 ----~~~~l~-~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~-~l~~L~~L~L~~  514 (552)
                          ++..+. ..+.|++|++++|.+++.    ++..+..+++|++|+|++|++++.....   .+. +...|+.|++.+
T Consensus       356 g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~  435 (460)
T d1z7xw1         356 GVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYD  435 (460)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             ccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCC
Confidence                233332 456788888888888643    4445566788888888888886543221   122 334688888888


Q ss_pred             CeeeEEcC
Q 047285          515 NSLILKFN  522 (552)
Q Consensus       515 n~~~~~~~  522 (552)
                      |.+.....
T Consensus       436 ~~~~~~~~  443 (460)
T d1z7xw1         436 IYWSEEME  443 (460)
T ss_dssp             CCCCHHHH
T ss_pred             CCCCHHHH
Confidence            88765443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=2.6e-16  Score=141.03  Aligned_cols=165  Identities=26%  Similarity=0.324  Sum_probs=100.3

Q ss_pred             CCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCC
Q 047285          124 DLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGL  203 (552)
Q Consensus       124 ~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l  203 (552)
                      ++..|++|++++|.++.  ++ .+..+++|++|++++|++++ ++ .++++++|++|++++|.++.++       .+..+
T Consensus        44 ~L~~L~~L~l~~~~i~~--l~-~l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~~l~-------~l~~l  111 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVKDLS-------SLKDL  111 (210)
T ss_dssp             HHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCCGG-------GGTTC
T ss_pred             HhcCccEEECcCCCCCC--ch-hHhhCCCCCEEeCCCccccC-cc-ccccCccccccccccccccccc-------ccccc
Confidence            46677778888777764  33 36677778888887777774 33 3567777777777777665433       25556


Q ss_pred             CCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCCc
Q 047285          204 YMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNL  283 (552)
Q Consensus       204 ~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L  283 (552)
                      ++|+.|++++|.+....    .+..++.++.+++++|.+.+..                             .+..+++|
T Consensus       112 ~~L~~L~l~~~~~~~~~----~l~~l~~l~~l~~~~n~l~~~~-----------------------------~~~~l~~L  158 (210)
T d1h6ta2         112 KKLKSLSLEHNGISDIN----GLVHLPQLESLYLGNNKITDIT-----------------------------VLSRLTKL  158 (210)
T ss_dssp             TTCCEEECTTSCCCCCG----GGGGCTTCCEEECCSSCCCCCG-----------------------------GGGGCTTC
T ss_pred             ccccccccccccccccc----cccccccccccccccccccccc-----------------------------cccccccc
Confidence            66666666666554421    2334445555555555443211                             33455666


Q ss_pred             cEEeccCccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEcc
Q 047285          284 VFIDLSSNQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVA  337 (552)
Q Consensus       284 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~  337 (552)
                      +++++++|++++ ++ .+..+++|++|++++|.+++ ++ .+.++++|++|+++
T Consensus       159 ~~l~l~~n~l~~-i~-~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         159 DTLSLEDNQISD-IV-PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             SEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEE
T ss_pred             cccccccccccc-cc-cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEcc
Confidence            666666666653 22 26666777777777776654 23 46667777777765

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=1.1e-15  Score=135.63  Aligned_cols=127  Identities=21%  Similarity=0.317  Sum_probs=83.9

Q ss_pred             cCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCC
Q 047285          123 VDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSG  202 (552)
Q Consensus       123 ~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~  202 (552)
                      ..++++++|+++++.+..  + +.++.+++|++|++++|++++..|  ++++++|++|++++|.+..++       .+..
T Consensus        37 ~~l~~l~~L~l~~~~i~~--l-~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~~-------~l~~  104 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIKS--I-DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT-------PLAN  104 (199)
T ss_dssp             HHHTTCCEEECTTSCCCC--C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG-------GGTT
T ss_pred             HHhcCCCEEECCCCCCCC--c-cccccCCCcCcCccccccccCccc--ccCCccccccccccccccccc-------cccc
Confidence            467888889998888874  3 347788888888888888875433  788888888888888765543       2667


Q ss_pred             CCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCC
Q 047285          203 LYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFD  267 (552)
Q Consensus       203 l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~  267 (552)
                      +++|+.|+++++......    .+..+++|+.|++++|.+....  .+..+++++.|++.+|.++
T Consensus       105 l~~L~~L~l~~~~~~~~~----~~~~l~~L~~L~l~~n~l~~~~--~l~~~~~L~~L~l~~n~l~  163 (199)
T d2omxa2         105 LTNLTGLTLFNNQITDID----PLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLNFSSNQVT  163 (199)
T ss_dssp             CTTCSEEECCSSCCCCCG----GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCC
T ss_pred             cccccccccccccccccc----ccchhhhhHHhhhhhhhhcccc--ccccccccccccccccccc
Confidence            777777777777665532    2445666666666666654321  2344444444444444443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=1.1e-15  Score=136.78  Aligned_cols=181  Identities=20%  Similarity=0.244  Sum_probs=126.1

Q ss_pred             EeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCCCCCCEEe
Q 047285          131 LDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLD  210 (552)
Q Consensus       131 L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~  210 (552)
                      .++..+.+.+. ++  ...+.+|++|++++|.+.. ++ .+..+++|++|++++|.++.++       .+..+++|++|+
T Consensus        29 ~~l~~~~~~~~-~~--~~~L~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~L~~n~i~~l~-------~~~~l~~L~~L~   96 (210)
T d1h6ta2          29 DNLKKKSVTDA-VT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIK-------PLANLKNLGWLF   96 (210)
T ss_dssp             HHTTCSCTTSE-EC--HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCG-------GGTTCTTCCEEE
T ss_pred             HHhCcCccCCc-cC--HHHhcCccEEECcCCCCCC-ch-hHhhCCCCCEEeCCCccccCcc-------ccccCccccccc
Confidence            35555555542 22  1246678888888888774 32 4677888888888888766543       245666666666


Q ss_pred             CCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCCccEEeccC
Q 047285          211 LSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSS  290 (552)
Q Consensus       211 ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~  290 (552)
                      +++|++++.   + .+..+++|+.|++++|.+...                          .   .+..+++++.+++++
T Consensus        97 l~~n~i~~l---~-~l~~l~~L~~L~l~~~~~~~~--------------------------~---~l~~l~~l~~l~~~~  143 (210)
T d1h6ta2          97 LDENKVKDL---S-SLKDLKKLKSLSLEHNGISDI--------------------------N---GLVHLPQLESLYLGN  143 (210)
T ss_dssp             CCSSCCCCG---G-GGTTCTTCCEEECTTSCCCCC--------------------------G---GGGGCTTCCEEECCS
T ss_pred             ccccccccc---c-ccccccccccccccccccccc--------------------------c---ccccccccccccccc
Confidence            666666542   1 244455555555555543221                          1   456678899999999


Q ss_pred             ccccccCchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCC
Q 047285          291 NQFQGQIPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSG  363 (552)
Q Consensus       291 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~  363 (552)
                      |.+++  +..+..+++|+++++++|.+++..  .+.++++|++|++++|+++ .++.  +..+++|++|++++
T Consensus       144 n~l~~--~~~~~~l~~L~~l~l~~n~l~~i~--~l~~l~~L~~L~Ls~N~i~-~l~~--l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         144 NKITD--ITVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHIS-DLRA--LAGLKNLDVLELFS  209 (210)
T ss_dssp             SCCCC--CGGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC-BCGG--GTTCTTCSEEEEEE
T ss_pred             ccccc--cccccccccccccccccccccccc--cccCCCCCCEEECCCCCCC-CChh--hcCCCCCCEEEccC
Confidence            98874  345778999999999999998643  3889999999999999998 5553  88999999999864

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=9.3e-16  Score=136.15  Aligned_cols=121  Identities=18%  Similarity=0.216  Sum_probs=70.7

Q ss_pred             CCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCCCCC
Q 047285          127 HLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYML  206 (552)
Q Consensus       127 ~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L  206 (552)
                      ++....++.+.+++. .  ....++++++|++++|++.. + +.+..+++|++|++++|.++.++       .+..+++|
T Consensus        19 ~~i~~~l~~~~~~~~-~--~~~~l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~~-------~l~~l~~L   86 (199)
T d2omxa2          19 EKMKTVLGKTNVTDT-V--SQTDLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDIT-------PLKNLTKL   86 (199)
T ss_dssp             HHHHHHTTCSSTTSE-E--CHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCG-------GGTTCTTC
T ss_pred             HHHHHHhCCCCCCCc-c--CHHHhcCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCcc-------cccCCccc
Confidence            333445666666642 2  22356788888888888763 3 34677788888888887766543       25667777


Q ss_pred             CEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCC
Q 047285          207 EHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINN  265 (552)
Q Consensus       207 ~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~  265 (552)
                      ++|++++|.+...+    .+..+++|+.|+++++......  .+..+++|+.|++++|.
T Consensus        87 ~~L~l~~n~~~~~~----~l~~l~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~n~  139 (199)
T d2omxa2          87 VDILMNNNQIADIT----PLANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNT  139 (199)
T ss_dssp             CEEECCSSCCCCCG----GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSC
T ss_pred             cccccccccccccc----cccccccccccccccccccccc--ccchhhhhHHhhhhhhh
Confidence            77777777665532    2455666666666665544322  13334444444444443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=4e-16  Score=143.43  Aligned_cols=78  Identities=18%  Similarity=0.048  Sum_probs=37.6

Q ss_pred             CCCEEEccCCcCcccCchhhcCCCCCcEE-ECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeC
Q 047285          409 ALESLDLSICQISGHLTNQLLQFKSLHTL-ELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDL  487 (552)
Q Consensus       409 ~L~~L~ls~n~~~~~~~~~l~~l~~L~~L-~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  487 (552)
                      .++.|++++|+++...+. ....++++++ ++.+|+++...+..|.++++|++|++++|+++...+..+.++++|+.+++
T Consensus       154 ~l~~L~l~~n~l~~i~~~-~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         154 ESVILWLNKNGIQEIHNC-AFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST  232 (242)
T ss_dssp             SCEEEECCSSCCCEECTT-TTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSE
T ss_pred             cceeeecccccccccccc-cccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcC
Confidence            455566666666543332 2333444433 34555555322334556666666666666665322333444444444433

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.64  E-value=2.5e-16  Score=139.06  Aligned_cols=129  Identities=22%  Similarity=0.239  Sum_probs=78.9

Q ss_pred             CCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCC
Q 047285          409 ALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLS  488 (552)
Q Consensus       409 ~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  488 (552)
                      +|++|++++|.+....+..+..+++|++|++++|++.+..+.+|.++++|++|+|++|.+++..+..|..+++|++|+|+
T Consensus        55 ~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~  134 (192)
T d1w8aa_          55 HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA  134 (192)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECT
T ss_pred             eEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccc
Confidence            56666666666666666666666666677777666665555666667777777777777665555566667777777777


Q ss_pred             CcccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCcccccEEecCCCCCC
Q 047285          489 NNKLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPPFQLETLQLRSCHLG  542 (552)
Q Consensus       489 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~  542 (552)
                      +|++........+.  ..++.+.+..+.+.+..|..+   ..++.++++.+++.
T Consensus       135 ~N~~~~~~~~~~~~--~~l~~~~l~~~~~~c~~p~~l---~~~~l~~L~~n~l~  183 (192)
T d1w8aa_         135 SNPFNCNCHLAWFA--EWLRKKSLNGGAARCGAPSKV---RDVQIKDLPHSEFK  183 (192)
T ss_dssp             TCCBCCSGGGHHHH--HHHHHHCCSGGGCBBCSSTTT---TTSBGGGSCTTTCC
T ss_pred             ccccccccchHHHh--hhhhhhcccCCCeEeCCChhh---cCCEeeecCHhhCc
Confidence            77665443321221  123444555666666666443   34556677777665

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.64  E-value=1.1e-16  Score=141.33  Aligned_cols=175  Identities=19%  Similarity=0.182  Sum_probs=104.0

Q ss_pred             EEeccCCCCCCCCCccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCCCCCCCCCchhHhhcccCceeeccc
Q 047285          309 HLDLRFNYFNSTTPGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSL  388 (552)
Q Consensus       309 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~  388 (552)
                      .++.++++++. +|..+.  +++++|++++|++++.++...|..+++|+.|++++|. +....+..+..++         
T Consensus        12 ~v~Cs~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~-i~~~~~~~~~~~~---------   78 (192)
T d1w8aa_          12 TVDCTGRGLKE-IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEGAS---------   78 (192)
T ss_dssp             EEECTTSCCSS-CCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTTCT---------
T ss_pred             EEEEeCCCcCc-cCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccc-ccccccccccccc---------
Confidence            44555555542 233221  4566666666666544444446666677777776666 5545444444443         


Q ss_pred             ccCCCCCccccccccccCCCCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcC
Q 047285          389 IDLSQDFSQVLDTFSSCGAYALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNML  468 (552)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  468 (552)
                                          +|++|++++|+++...+..|.++++|++|+|++|++++..+.+|..+++|++|+|++|++
T Consensus        79 --------------------~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~  138 (192)
T d1w8aa_          79 --------------------HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             --------------------TCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             --------------------ccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccc
Confidence                                677777777777766666777777777777777777766666677777777777777777


Q ss_pred             CccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEEEccCCeeeEEc
Q 047285          469 NGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKF  521 (552)
Q Consensus       469 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~  521 (552)
                      .......+ -...++.+.+..+.+....|.    .+..++.++|+.|.+.+..
T Consensus       139 ~~~~~~~~-~~~~l~~~~l~~~~~~c~~p~----~l~~~~l~~L~~n~l~C~~  186 (192)
T d1w8aa_         139 NCNCHLAW-FAEWLRKKSLNGGAARCGAPS----KVRDVQIKDLPHSEFKCSS  186 (192)
T ss_dssp             CCSGGGHH-HHHHHHHHCCSGGGCBBCSST----TTTTSBGGGSCTTTCCCCC
T ss_pred             ccccchHH-HhhhhhhhcccCCCeEeCCCh----hhcCCEeeecCHhhCcCCC
Confidence            53322111 112345556666666655554    3344556667777665443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=9.5e-17  Score=151.08  Aligned_cols=217  Identities=18%  Similarity=0.136  Sum_probs=138.3

Q ss_pred             CCCCccEEeccCcccccc-CchhhhcccCCcEEeccCCCCCCCCCccCCCCCCCCEEEccCc-cceeecCccccCCCCcc
Q 047285          279 GLRNLVFIDLSSNQFQGQ-IPIGLRNLTSLRHLDLRFNYFNSTTPGWLSKFNDLEFLSVAWN-SLQGTISSVGLENLTSI  356 (552)
Q Consensus       279 ~l~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n-~l~~~~~~~~l~~l~~L  356 (552)
                      ...+|++|++++|.+++. +...+..+++|++|+++++.+++..+..+..+++|++|++++| .+++.........+++|
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            345778888888776644 3445667788888888888777666666777788888888775 34422111113467888


Q ss_pred             CEEeCCCCCCCCCCC-chhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCC--cCccc-CchhhcCCC
Q 047285          357 ETLDLSGNSKLGGKI-PTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSIC--QISGH-LTNQLLQFK  432 (552)
Q Consensus       357 ~~L~l~~n~~l~~~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n--~~~~~-~~~~l~~l~  432 (552)
                      ++|++++|..++... ...+...                            ++.|+.|+++++  .++.. +......++
T Consensus       124 ~~L~ls~c~~~~~~~~~~~~~~~----------------------------~~~L~~L~l~~~~~~i~~~~l~~l~~~~~  175 (284)
T d2astb2         124 DELNLSWCFDFTEKHVQVAVAHV----------------------------SETITQLNLSGYRKNLQKSDLSTLVRRCP  175 (284)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHS----------------------------CTTCCEEECCSCGGGSCHHHHHHHHHHCT
T ss_pred             cccccccccccccccchhhhccc----------------------------ccccchhhhcccccccccccccccccccc
Confidence            888888876443221 1112221                            236888888765  24332 223345678


Q ss_pred             CCcEEECCCCc-ccCCCcccccCCCCCCEEeCCCC-cCCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCCEE
Q 047285          433 SLHTLELGHNS-LFGPLPPALGELSSLKKLDLSNN-MLNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLTWF  510 (552)
Q Consensus       433 ~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L  510 (552)
                      +|++|++++|. +++..+..+..+++|++|++++| .+++.....++++++|++|++++| +++..-......+++|+  
T Consensus       176 ~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L~--  252 (284)
T d2astb2         176 NLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQ--  252 (284)
T ss_dssp             TCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSE--
T ss_pred             cccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCcccc--
Confidence            88999998864 66666777888888999999886 466666666778888999998888 33322221345566665  


Q ss_pred             EccCCeeeEEcCCCCcC
Q 047285          511 SASGNSLILKFNPNWVP  527 (552)
Q Consensus       511 ~L~~n~~~~~~~~~~~~  527 (552)
                       +..+.++...++.+..
T Consensus       253 -i~~~~ls~~~~~~~~~  268 (284)
T d2astb2         253 -INCSHFTTIARPTIGN  268 (284)
T ss_dssp             -ESCCCSCCTTCSSCSS
T ss_pred             -ccCccCCCCCCCccCc
Confidence             4556666554444443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=6.9e-16  Score=145.07  Aligned_cols=214  Identities=21%  Similarity=0.212  Sum_probs=133.6

Q ss_pred             ccCCcEEeccCCCCCCCC-CccCCCCCCCCEEEccCccceeecCccccCCCCccCEEeCCCCCCCCCCCchhHhhcccCc
Q 047285          304 LTSLRHLDLRFNYFNSTT-PGWLSKFNDLEFLSVAWNSLQGTISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLT  382 (552)
Q Consensus       304 l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~  382 (552)
                      ..+|++|+++++.+++.. ...+..+++|++|++++|.+++..... +..+++|++|++++|..++......+       
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~-l~~~~~L~~L~Ls~c~~itd~~l~~l-------  116 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTL-------  116 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCHHHHHHH-------
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHH-HhcCCCCcCccccccccccccccchh-------
Confidence            345666666655554322 233455566666666666555444443 45555666666666543332111111       


Q ss_pred             eeecccccCCCCCccccccccccCCCCCCEEEccCC-cCcccC-chhh-cCCCCCcEEECCCCc--ccCC-CcccccCCC
Q 047285          383 SVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSIC-QISGHL-TNQL-LQFKSLHTLELGHNS--LFGP-LPPALGELS  456 (552)
Q Consensus       383 ~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n-~~~~~~-~~~l-~~l~~L~~L~L~~n~--l~~~-~~~~l~~l~  456 (552)
                                           ..++++|++|++++| .++... ...+ ..+++|+.|+++++.  +++. +.....+++
T Consensus       117 ---------------------~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~  175 (284)
T d2astb2         117 ---------------------LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCP  175 (284)
T ss_dssp             ---------------------HHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCT
T ss_pred             ---------------------hHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccc
Confidence                                 123458999999987 444322 2223 335799999999864  4322 333446789


Q ss_pred             CCCEEeCCCCc-CCccCcccccCCCCCCeeeCCCc-ccceecCHHhhhcCCCCCEEEccCCeeeEEcCCCCcCc-ccccE
Q 047285          457 SLKKLDLSNNM-LNGFIPLSLGKLSHLEYLDLSNN-KLNASLSEIHFVNLTKLTWFSASGNSLILKFNPNWVPP-FQLET  533 (552)
Q Consensus       457 ~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~-~~L~~  533 (552)
                      +|++|++++|. +++.....+..+++|++|++++| .+++.... .+..+++|++|++++| +.   ...+..+ ..+..
T Consensus       176 ~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~-~L~~~~~L~~L~l~~~-~~---d~~l~~l~~~lp~  250 (284)
T d2astb2         176 NLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLL-ELGEIPTLKTLQVFGI-VP---DGTLQLLKEALPH  250 (284)
T ss_dssp             TCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTS-SC---TTCHHHHHHHSTT
T ss_pred             cccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHH-HHhcCCCCCEEeeeCC-CC---HHHHHHHHHhCcc
Confidence            99999999975 67777788889999999999997 56665555 6888999999999988 22   1122221 24555


Q ss_pred             EecCCCCCCCCCCccccc
Q 047285          534 LQLRSCHLGPHFPSWLHS  551 (552)
Q Consensus       534 L~l~~n~~~~~iP~~l~~  551 (552)
                      |++..+++++..|+.+++
T Consensus       251 L~i~~~~ls~~~~~~~~~  268 (284)
T d2astb2         251 LQINCSHFTTIARPTIGN  268 (284)
T ss_dssp             SEESCCCSCCTTCSSCSS
T ss_pred             ccccCccCCCCCCCccCc
Confidence            667888888776665543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.51  E-value=3.2e-14  Score=114.92  Aligned_cols=104  Identities=28%  Similarity=0.316  Sum_probs=76.8

Q ss_pred             CEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCCCCCCE
Q 047285          129 IHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEH  208 (552)
Q Consensus       129 ~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~  208 (552)
                      |+|++++|+++  .++ .++.+++|++|++++|+++ .+|..++.+++|++|++++|.++.++       .+..+++|++
T Consensus         1 R~L~Ls~n~l~--~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l~-------~~~~l~~L~~   69 (124)
T d1dcea3           1 RVLHLAHKDLT--VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVD-------GVANLPRLQE   69 (124)
T ss_dssp             SEEECTTSCCS--SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCG-------GGTTCSSCCE
T ss_pred             CEEEcCCCCCC--CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccccC-------ccccccccCe
Confidence            57888888887  355 3778888888888888887 56777888888888888888877653       3677778888


Q ss_pred             EeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCC
Q 047285          209 LDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCH  244 (552)
Q Consensus       209 L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~  244 (552)
                      |++++|.+...+.+ ..+..+++|++|++++|+++.
T Consensus        70 L~l~~N~i~~~~~~-~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          70 LLLCNNRLQQSAAI-QPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             EECCSSCCCSSSTT-GGGGGCTTCCEEECTTSGGGG
T ss_pred             EECCCCccCCCCCc-hhhcCCCCCCEEECCCCcCCc
Confidence            88888877765432 345567777777777776653

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.49  E-value=1.9e-15  Score=146.65  Aligned_cols=61  Identities=25%  Similarity=0.330  Sum_probs=27.5

Q ss_pred             CCCEEEccCCcCccc-----CchhhcCCCCCcEEECCCCcccCC----CcccccCCCCCCEEeCCCCcCC
Q 047285          409 ALESLDLSICQISGH-----LTNQLLQFKSLHTLELGHNSLFGP----LPPALGELSSLKKLDLSNNMLN  469 (552)
Q Consensus       409 ~L~~L~ls~n~~~~~-----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~  469 (552)
                      .+++|++++|.++..     +...+..+++|+.|++++|.++..    +...+..+++|++|++++|.++
T Consensus       187 ~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~  256 (344)
T d2ca6a1         187 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS  256 (344)
T ss_dssp             TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred             hhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccC
Confidence            455555555554421     112233445555555555554321    2233344455555555555544

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2.1e-14  Score=122.09  Aligned_cols=130  Identities=17%  Similarity=0.156  Sum_probs=97.0

Q ss_pred             cccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCcccc
Q 047285          121 SLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWL  200 (552)
Q Consensus       121 ~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l  200 (552)
                      .+.+...+|+|+|++|+++  .++..+..+++|++|++++|+++ .++ .+..+++|++|++++|.++.++...     +
T Consensus        13 ~~~n~~~lr~L~L~~n~I~--~i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~-----~   83 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIP--VIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGL-----D   83 (162)
T ss_dssp             EEECTTSCEEEECTTSCCC--SCCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCH-----H
T ss_pred             hccCcCcCcEEECCCCCCC--ccCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCccc-----c
Confidence            3667888999999999998  46777788999999999999998 443 5889999999999999888765321     4


Q ss_pred             CCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCCCC---CcccCCCCCceee
Q 047285          201 SGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHFPP---LLSANFSSLKALH  260 (552)
Q Consensus       201 ~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~---~~~~~l~~L~~L~  260 (552)
                      ..+++|++|++++|.+...+.+ ..+..+++|++|++++|.++..+.   ..+..+++|+.||
T Consensus        84 ~~l~~L~~L~L~~N~i~~~~~l-~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          84 QALPDLTELILTNNSLVELGDL-DPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             HHCTTCCEEECCSCCCCCGGGG-GGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ccccccccceeccccccccccc-cccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            5688888999988888775432 346677888888888887765442   2234444444443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.46  E-value=5.2e-15  Score=143.46  Aligned_cols=249  Identities=20%  Similarity=0.181  Sum_probs=154.6

Q ss_pred             ccCCCCccEEeccCccccccC----chhhhcccCCcEEeccCCCCCCCC----------CccCCCCCCCCEEEccCccce
Q 047285          277 VFGLRNLVFIDLSSNQFQGQI----PIGLRNLTSLRHLDLRFNYFNSTT----------PGWLSKFNDLEFLSVAWNSLQ  342 (552)
Q Consensus       277 ~~~l~~L~~L~L~~n~~~~~~----~~~l~~l~~L~~L~l~~n~l~~~~----------~~~l~~l~~L~~L~l~~n~l~  342 (552)
                      +.....|+.|+|++|.+...-    ...+...++|+.++++++......          ...+..+++|+.|++++|.+.
T Consensus        27 L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~  106 (344)
T d2ca6a1          27 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG  106 (344)
T ss_dssp             HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred             HhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccc
Confidence            344556666666666554321    223444566666666655432211          122344566777777777655


Q ss_pred             ee----cCccccCCCCccCEEeCCCCCCCCCCCchhHhhcccCceeecccccCCCCCccccccccccCCCCCCEEEccCC
Q 047285          343 GT----ISSVGLENLTSIETLDLSGNSKLGGKIPTSFARLCKLTSVDLSLIDLSQDFSQVLDTFSSCGAYALESLDLSIC  418 (552)
Q Consensus       343 ~~----~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n  418 (552)
                      ..    +... +...++|+.|++++|. +.......+...  +..+...              ......+.|+.+.+++|
T Consensus       107 ~~~~~~l~~~-l~~~~~L~~L~l~~n~-l~~~~~~~l~~~--l~~~~~~--------------~~~~~~~~L~~l~l~~n  168 (344)
T d2ca6a1         107 PTAQEPLIDF-LSKHTPLEHLYLHNNG-LGPQAGAKIARA--LQELAVN--------------KKAKNAPPLRSIICGRN  168 (344)
T ss_dssp             TTTHHHHHHH-HHHCTTCCEEECCSSC-CHHHHHHHHHHH--HHHHHHH--------------HHHHTCCCCCEEECCSS
T ss_pred             cccccchhhh-hcccccchheeccccc-cccccccccccc--ccccccc--------------cccccCcccceeecccc
Confidence            32    1121 3456778888888876 432211112110  0000000              00113457999999999


Q ss_pred             cCcccC----chhhcCCCCCcEEECCCCcccCC-----CcccccCCCCCCEEeCCCCcCCcc----CcccccCCCCCCee
Q 047285          419 QISGHL----TNQLLQFKSLHTLELGHNSLFGP-----LPPALGELSSLKKLDLSNNMLNGF----IPLSLGKLSHLEYL  485 (552)
Q Consensus       419 ~~~~~~----~~~l~~l~~L~~L~L~~n~l~~~-----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L  485 (552)
                      .++...    ...+...++|+.|++++|++...     +...+..+++|+.|++++|.++..    +...+..+++|++|
T Consensus       169 ~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L  248 (344)
T d2ca6a1         169 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL  248 (344)
T ss_dssp             CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEE
T ss_pred             cccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhh
Confidence            887432    33456789999999999998742     334567789999999999998643    44567789999999


Q ss_pred             eCCCcccceecCHH---hhh--cCCCCCEEEccCCeeeEEc----CCCCc-CcccccEEecCCCCCCC
Q 047285          486 DLSNNKLNASLSEI---HFV--NLTKLTWFSASGNSLILKF----NPNWV-PPFQLETLQLRSCHLGP  543 (552)
Q Consensus       486 ~L~~n~l~~~~~~~---~~~--~l~~L~~L~L~~n~~~~~~----~~~~~-~~~~L~~L~l~~n~~~~  543 (552)
                      +|++|.+++.-...   .+.  ..+.|++|++++|++....    ...+. .+++|+.|++++|++.+
T Consensus       249 ~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         249 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             ECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             hhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            99999997642221   233  2478999999999987542    22222 35689999999999974

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.43  E-value=3.2e-13  Score=108.93  Aligned_cols=104  Identities=33%  Similarity=0.434  Sum_probs=80.6

Q ss_pred             CEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCc
Q 047285          411 ESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNN  490 (552)
Q Consensus       411 ~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  490 (552)
                      ++|++++|+++.. + .+..+++|++|++++|+++ .+|..++.+++|++|++++|.+++ +| .+..+++|++|++++|
T Consensus         1 R~L~Ls~n~l~~l-~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLTVL-C-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCSSC-C-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCCCC-c-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCC
Confidence            4688888888743 3 4778888888888888887 677778888888888888888873 44 4778888888888888


Q ss_pred             ccceecCHHhhhcCCCCCEEEccCCeeeE
Q 047285          491 KLNASLSEIHFVNLTKLTWFSASGNSLIL  519 (552)
Q Consensus       491 ~l~~~~~~~~~~~l~~L~~L~L~~n~~~~  519 (552)
                      ++++......+..+++|+++++++|++..
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence            88543322257788888888888888763

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=3e-13  Score=114.85  Aligned_cols=129  Identities=20%  Similarity=0.214  Sum_probs=70.2

Q ss_pred             cCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCccccCCCCCCCEEeCCCCcCCCCcchhhhc
Q 047285          147 LGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKASDWLLVT  226 (552)
Q Consensus       147 ~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~  226 (552)
                      +.++.+|++|+|++|+++ .+|..+..+++|++|++++|.+..++       .+..                        
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~l~-------~~~~------------------------   61 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLD-------GFPL------------------------   61 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEEC-------CCCC------------------------
T ss_pred             ccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCccC-------Cccc------------------------
Confidence            345566777777777776 34544556666666666666655432       1334                        


Q ss_pred             CCCCCCCEEEcCCCCCCCCCCCcccCCCCCceeecCCCCCCCCCccccccccCCCCccEEeccCccccccC---chhhhc
Q 047285          227 NSLPSLKVLKLTKCQLCHFPPLLSANFSSLKALHLAINNFDNSLFQYGSWVFGLRNLVFIDLSSNQFQGQI---PIGLRN  303 (552)
Q Consensus       227 ~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~---~~~l~~  303 (552)
                        +++|++|++++|.+...++..+..+++|+.|++++|.+.....  ...+..+++|+++++++|.++...   +..+..
T Consensus        62 --l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~--l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~  137 (162)
T d1a9na_          62 --LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGD--LDPLASLKSLTYLCILRNPVTNKKHYRLYVIYK  137 (162)
T ss_dssp             --CSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGG--GGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHH
T ss_pred             --CcchhhhhcccccccCCCccccccccccccceecccccccccc--ccccccccccchhhcCCCccccccchHHHHHHH
Confidence              4444455555555444444444455555555555555543211  014556677777777777665321   123556


Q ss_pred             ccCCcEEe
Q 047285          304 LTSLRHLD  311 (552)
Q Consensus       304 l~~L~~L~  311 (552)
                      +|+|++||
T Consensus       138 lp~L~~LD  145 (162)
T d1a9na_         138 VPQVRVLD  145 (162)
T ss_dssp             CTTCSEET
T ss_pred             CCCcCeeC
Confidence            66666665

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.22  E-value=2.4e-13  Score=119.72  Aligned_cols=122  Identities=27%  Similarity=0.294  Sum_probs=87.3

Q ss_pred             CCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeC
Q 047285          408 YALESLDLSICQISGHLTNQLLQFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDL  487 (552)
Q Consensus       408 ~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  487 (552)
                      ++|++|++++|.++.. + .+..+++|+.|++++|+++ .+|.....+++|++|++++|.++. + ..+..+++|++|++
T Consensus        48 ~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l-~~~~~l~~L~~L~L  122 (198)
T d1m9la_          48 KACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-L-SGIEKLVNLRVLYM  122 (198)
T ss_dssp             TTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-H-HHHHHHHHSSEEEE
T ss_pred             cccceeECcccCCCCc-c-cccCCccccChhhcccccc-cccccccccccccccccccccccc-c-cccccccccccccc
Confidence            3788888888888743 3 4777888888888888886 556555556678888888888873 3 34667788888888


Q ss_pred             CCcccceecCH-HhhhcCCCCCEEEccCCeeeEEcCCC----------CcCcccccEEe
Q 047285          488 SNNKLNASLSE-IHFVNLTKLTWFSASGNSLILKFNPN----------WVPPFQLETLQ  535 (552)
Q Consensus       488 ~~n~l~~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~----------~~~~~~L~~L~  535 (552)
                      ++|+++. ++. ..+..+++|++|++++|++....+..          +..+++|+.||
T Consensus       123 ~~N~i~~-~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         123 SNNKITN-WGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             SEEECCC-HHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ccchhcc-ccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            8888854 332 25778888888888888877555433          33466788876

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.19  E-value=3.9e-14  Score=124.87  Aligned_cols=116  Identities=26%  Similarity=0.238  Sum_probs=91.7

Q ss_pred             cCccccCCCCCCEEeCCCCcCCCCccCcccCCCCCCCEEeCCCCcCCCCCccccCCCCCCCEEeccCCCCCCCccccCCc
Q 047285          118 VNPSLVDLKHLIHLDLSGNDFEGIQIPKYLGSLENLRYLNLSGAKFAGMIPLQLGNLSNLQYLDLSGTFLSNYDLHVDSL  197 (552)
Q Consensus       118 ~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~  197 (552)
                      ++.++..+++|++|+|++|.++.  ++ .+..+++|++|++++|.++ .+|.....+++|++|++++|.++.++      
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~~--i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l~------  109 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLS------  109 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEESC--CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCHH------
T ss_pred             hhhHHhcccccceeECcccCCCC--cc-cccCCccccChhhcccccc-cccccccccccccccccccccccccc------
Confidence            45568889999999999999984  54 4888999999999999987 56655566778999999999877643      


Q ss_pred             cccCCCCCCCEEeCCCCcCCCCcchhhhcCCCCCCCEEEcCCCCCCCC
Q 047285          198 SWLSGLYMLEHLDLSQMNLSKASDWLLVTNSLPSLKVLKLTKCQLCHF  245 (552)
Q Consensus       198 ~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  245 (552)
                       .+..+++|++|++++|.++..+. ...+..+++|++|++++|++...
T Consensus       110 -~~~~l~~L~~L~L~~N~i~~~~~-~~~l~~l~~L~~L~L~~N~l~~~  155 (198)
T d1m9la_         110 -GIEKLVNLRVLYMSNNKITNWGE-IDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             -HHHHHHHSSEEEESEEECCCHHH-HHHHTTTTTCSEEEECSSHHHHH
T ss_pred             -cccccccccccccccchhccccc-cccccCCCccceeecCCCccccC
Confidence             36778889999999998887432 24567888899999888876543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=8.5e-11  Score=98.65  Aligned_cols=111  Identities=23%  Similarity=0.126  Sum_probs=76.4

Q ss_pred             CCCCEEEccCCcCcccCchhhcCCCCCcEEECCCCc-ccCCCcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeee
Q 047285          408 YALESLDLSICQISGHLTNQLLQFKSLHTLELGHNS-LFGPLPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLD  486 (552)
Q Consensus       408 ~~L~~L~ls~n~~~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  486 (552)
                      ...+.++.+++.+. ..|..+..+++|++|++++|+ ++...+..|.++++|+.|++++|+++...+..|..+++|++|+
T Consensus         8 ~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~   86 (156)
T d2ifga3           8 HGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN   86 (156)
T ss_dssp             SSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred             CCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccccee
Confidence            34556777776665 345566777788888886654 6644456677788888888888888765566777788888888


Q ss_pred             CCCcccceecCHHhhhcCCCCCEEEccCCeeeEEc
Q 047285          487 LSNNKLNASLSEIHFVNLTKLTWFSASGNSLILKF  521 (552)
Q Consensus       487 L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~  521 (552)
                      |++|+++ .+|...+.. .+|+.|+|++|++.+..
T Consensus        87 Ls~N~l~-~l~~~~~~~-~~l~~L~L~~Np~~C~C  119 (156)
T d2ifga3          87 LSFNALE-SLSWKTVQG-LSLQELVLSGNPLHCSC  119 (156)
T ss_dssp             CCSSCCS-CCCSTTTCS-CCCCEEECCSSCCCCCG
T ss_pred             ccCCCCc-ccChhhhcc-ccccccccCCCcccCCc
Confidence            8888884 455534443 36778888888776543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=2e-10  Score=96.30  Aligned_cols=110  Identities=19%  Similarity=0.138  Sum_probs=91.4

Q ss_pred             CCCCCcEEECCCCcccCCCcccccCCCCCCEEeCCCCc-CCccCcccccCCCCCCeeeCCCcccceecCHHhhhcCCCCC
Q 047285          430 QFKSLHTLELGHNSLFGPLPPALGELSSLKKLDLSNNM-LNGFIPLSLGKLSHLEYLDLSNNKLNASLSEIHFVNLTKLT  508 (552)
Q Consensus       430 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~  508 (552)
                      .+...+.++.+++++. ..|..+..+++|++|++++|+ ++..-+..|.++++|+.|++++|+++...+. .|..+++|+
T Consensus         6 ~c~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~-~f~~l~~L~   83 (156)
T d2ifga3           6 CPHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD-AFHFTPRLS   83 (156)
T ss_dssp             CCSSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTT-GGGSCSCCC
T ss_pred             CcCCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccc-ccccccccc
Confidence            3445677899998887 677888899999999998775 7755567799999999999999999665455 899999999


Q ss_pred             EEEccCCeeeEEcCCCCcCcccccEEecCCCCCC
Q 047285          509 WFSASGNSLILKFNPNWVPPFQLETLQLRSCHLG  542 (552)
Q Consensus       509 ~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~  542 (552)
                      +|+|++|++. .+|.......+|+.|++++|++.
T Consensus        84 ~L~Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          84 RLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             EEECCSSCCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             ceeccCCCCc-ccChhhhccccccccccCCCccc
Confidence            9999999998 55555555568999999999885

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=1.7e-08  Score=84.86  Aligned_cols=83  Identities=27%  Similarity=0.260  Sum_probs=46.4

Q ss_pred             cCCCCCcEEECCCCcccCC--CcccccCCCCCCEEeCCCCcCCccCcccccCCCCCCeeeCCCcccceecCH------Hh
Q 047285          429 LQFKSLHTLELGHNSLFGP--LPPALGELSSLKKLDLSNNMLNGFIPLSLGKLSHLEYLDLSNNKLNASLSE------IH  500 (552)
Q Consensus       429 ~~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------~~  500 (552)
                      ..+++|++|++++|+++..  ++..+..+++|+.|++++|.++..-+-.......|+.+++++|++.+....      ..
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i  141 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI  141 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHH
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHH
Confidence            4566777777777776632  233445566777777777776632221222334567777777766544331      13


Q ss_pred             hhcCCCCCEEE
Q 047285          501 FVNLTKLTWFS  511 (552)
Q Consensus       501 ~~~l~~L~~L~  511 (552)
                      +..+|+|+.||
T Consensus       142 ~~~~P~L~~LD  152 (162)
T d1koha1         142 RERFPKLLRLD  152 (162)
T ss_dssp             HTTSTTCCEET
T ss_pred             HHHCCCCCEEC
Confidence            44566666554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=6.7e-08  Score=81.13  Aligned_cols=45  Identities=29%  Similarity=0.228  Sum_probs=22.6

Q ss_pred             CCCCCCCEEeccCCCCCCCccccCCccccCCCCCCCEEeCCCCcCCCC
Q 047285          172 GNLSNLQYLDLSGTFLSNYDLHVDSLSWLSGLYMLEHLDLSQMNLSKA  219 (552)
Q Consensus       172 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~L~~L~ls~n~~~~~  219 (552)
                      .++++|++|++++|.++.++...   ..+..+++|+.|++++|.++..
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~---~~~~~l~~L~~L~Ls~N~i~~l  106 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMS---SIVQKAPNLKILNLSGNELKSE  106 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGG---THHHHSTTCCCCCCTTSCCCCG
T ss_pred             HhCCCCCEeeCCCccccCCchhH---HHHhhCCcccccccccCccccc
Confidence            45666666666666665542110   1123445555555555555543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.89  E-value=5.6e-06  Score=69.32  Aligned_cols=109  Identities=15%  Similarity=0.127  Sum_probs=73.9

Q ss_pred             CCCCCEEEccCC-cCccc----CchhhcCCCCCcEEECCCCcccCC----CcccccCCCCCCEEeCCCCcCCcc----Cc
Q 047285          407 AYALESLDLSIC-QISGH----LTNQLLQFKSLHTLELGHNSLFGP----LPPALGELSSLKKLDLSNNMLNGF----IP  473 (552)
Q Consensus       407 ~~~L~~L~ls~n-~~~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~  473 (552)
                      .+.|++|+|+++ .++..    +...+...++|++|+|++|.+...    +...+...+.|++|++++|.+++.    +.
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~   93 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL   93 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHH
Confidence            457899999874 46533    334566678899999999888632    333455667889999999888643    33


Q ss_pred             ccccCCCCCCeeeCCCccccee-------cCHHhhhcCCCCCEEEccCCe
Q 047285          474 LSLGKLSHLEYLDLSNNKLNAS-------LSEIHFVNLTKLTWFSASGNS  516 (552)
Q Consensus       474 ~~~~~l~~L~~L~L~~n~l~~~-------~~~~~~~~l~~L~~L~L~~n~  516 (552)
                      ..+...++|++|++++|.....       +.. .+...+.|+.|+++.+.
T Consensus        94 ~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~-~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          94 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMM-AIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHH-HHHHCSSCCEEECCCCC
T ss_pred             HHHHhCCcCCEEECCCCcCCCccHHHHHHHHH-HHHhCCCccEeeCcCCC
Confidence            3456678888888888754321       223 45567888888887654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.55  E-value=3.3e-05  Score=64.42  Aligned_cols=85  Identities=18%  Similarity=0.146  Sum_probs=55.7

Q ss_pred             CCCCEEEccCCcCccc----CchhhcCCCCCcEEECCCCcccCC----CcccccCCCCCCEEeCCCCcCCcc-------C
Q 047285          408 YALESLDLSICQISGH----LTNQLLQFKSLHTLELGHNSLFGP----LPPALGELSSLKKLDLSNNMLNGF-------I  472 (552)
Q Consensus       408 ~~L~~L~ls~n~~~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~-------~  472 (552)
                      +.|++|++++|.++..    +.+.+...+.|++|+|++|.+++.    +-..+...++|++|++++|.....       +
T Consensus        44 ~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l  123 (167)
T d1pgva_          44 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDM  123 (167)
T ss_dssp             SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHH
T ss_pred             CccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHH
Confidence            3677888888777642    223445567788888888877642    233456667888888888764421       3


Q ss_pred             cccccCCCCCCeeeCCCccc
Q 047285          473 PLSLGKLSHLEYLDLSNNKL  492 (552)
Q Consensus       473 ~~~~~~l~~L~~L~L~~n~l  492 (552)
                      ...+...++|+.|+++.+..
T Consensus       124 ~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_         124 MMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHhCCCccEeeCcCCCc
Confidence            34455568888888877654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.22  E-value=6.6e-05  Score=62.50  Aligned_cols=110  Identities=18%  Similarity=0.182  Sum_probs=69.6

Q ss_pred             CCCCCEEEccC-CcCcccC----chhhcCCCCCcEEECCCCcccCC----CcccccCCCCCCEEeCCCCcCCcc----Cc
Q 047285          407 AYALESLDLSI-CQISGHL----TNQLLQFKSLHTLELGHNSLFGP----LPPALGELSSLKKLDLSNNMLNGF----IP  473 (552)
Q Consensus       407 ~~~L~~L~ls~-n~~~~~~----~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~  473 (552)
                      .+.|++|++++ +.++...    ...+...++|++|++++|.++..    +...+...++++.+++++|.+...    +.
T Consensus        16 ~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~   95 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV   95 (166)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHH
Confidence            45788888887 4565332    33445678888888888887643    223445567888888888877533    33


Q ss_pred             ccccCCCCCCeeeC--CCccccee----cCHHhhhcCCCCCEEEccCCee
Q 047285          474 LSLGKLSHLEYLDL--SNNKLNAS----LSEIHFVNLTKLTWFSASGNSL  517 (552)
Q Consensus       474 ~~~~~l~~L~~L~L--~~n~l~~~----~~~~~~~~l~~L~~L~L~~n~~  517 (552)
                      ..+...++|+.++|  ++|.+...    +.. .+...+.|+.|+++.+..
T Consensus        96 ~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~-~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          96 EALQSNTSLIELRIDNQSQPLGNNVEMEIAN-MLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HGGGGCSSCCEEECCCCSSCCCHHHHHHHHH-HHHHCSSCCEEECCCSSH
T ss_pred             HHHHhCccccEEeeccCCCcCcHHHHHHHHH-HHHhCCCcCEEeCcCCCC
Confidence            45566777876555  45556432    222 455677888887766543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.88  E-value=0.00022  Score=59.20  Aligned_cols=85  Identities=19%  Similarity=0.161  Sum_probs=52.6

Q ss_pred             CCCCEEEccCCcCcccC----chhhcCCCCCcEEECCCCcccCC----CcccccCCCCCCEEeCC--CCcCCc----cCc
Q 047285          408 YALESLDLSICQISGHL----TNQLLQFKSLHTLELGHNSLFGP----LPPALGELSSLKKLDLS--NNMLNG----FIP  473 (552)
Q Consensus       408 ~~L~~L~ls~n~~~~~~----~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~--~n~l~~----~~~  473 (552)
                      +.|++|++++|.++...    ...+...++++.+++++|.+...    +...+...++|+.++|+  +|.+..    .+.
T Consensus        46 ~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La  125 (166)
T d1io0a_          46 TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIA  125 (166)
T ss_dssp             CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHH
T ss_pred             CccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHH
Confidence            46777777777765432    23344567777777777776532    23455666777765554  455543    244


Q ss_pred             ccccCCCCCCeeeCCCccc
Q 047285          474 LSLGKLSHLEYLDLSNNKL  492 (552)
Q Consensus       474 ~~~~~l~~L~~L~L~~n~l  492 (552)
                      ..+...++|++|+++.+..
T Consensus       126 ~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_         126 NMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHHHCSSCCEEECCCSSH
T ss_pred             HHHHhCCCcCEEeCcCCCC
Confidence            4555678888888877654