Citrus Sinensis ID: 047286
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 632 | 2.2.26 [Sep-21-2011] | |||||||
| Q9M1Q9 | 1296 | ABC transporter B family | yes | no | 0.906 | 0.442 | 0.315 | 2e-89 | |
| Q9M0M2 | 1236 | ABC transporter B family | no | no | 0.563 | 0.288 | 0.391 | 2e-72 | |
| Q9FHF1 | 1248 | ABC transporter B family | no | no | 0.471 | 0.238 | 0.437 | 2e-70 | |
| O80725 | 1286 | ABC transporter B family | no | no | 0.466 | 0.229 | 0.385 | 2e-57 | |
| Q9SYI3 | 1230 | ABC transporter B family | no | no | 0.438 | 0.225 | 0.377 | 1e-56 | |
| Q9FWX7 | 1278 | ABC transporter B family | no | no | 0.468 | 0.231 | 0.387 | 2e-55 | |
| Q8LPK2 | 1273 | ABC transporter B family | no | no | 0.903 | 0.448 | 0.257 | 5e-50 | |
| Q9FWX8 | 1273 | ABC transporter B family | no | no | 0.460 | 0.228 | 0.363 | 1e-49 | |
| Q9SYI2 | 1229 | ABC transporter B family | no | no | 0.463 | 0.238 | 0.378 | 1e-46 | |
| Q9SGY1 | 1227 | ABC transporter B family | no | no | 0.450 | 0.232 | 0.314 | 5e-35 |
| >sp|Q9M1Q9|AB21B_ARATH ABC transporter B family member 21 OS=Arabidopsis thaliana GN=ABCB21 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 330 bits (847), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 301/954 (31%), Positives = 403/954 (42%), Gaps = 381/954 (39%)
Query: 47 MPLGQTSLNVNAFAAGQAAACKMFETIERIPKINPYDNR--------------------- 85
M LGQ S ++AFAAGQAAA KMFE I+R P+I+ D
Sbjct: 354 MSLGQASPCLSAFAAGQAAAYKMFEAIKRKPEIDASDTTGKVLDDIRGDIELNNVNFSYP 413
Query: 86 ----------FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQ---------- 125
F + SG+TVALVGQSGSGKSTV++L+E RFY P++ +
Sbjct: 414 ARPEEQIFRGFSLSISSGSTVALVGQSGSGKSTVVSLIE--RFYDPQSGEVRIDGINLKE 471
Query: 126 -------EKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPL 178
KIGLVS+EP+ E I YGK+NA+ E IR A +LANA K IDKLP
Sbjct: 472 FQLKWIRSKIGLVSQEPVLFTSSIKEN--IAYGKENATVEEIRKATELANASKFIDKLPQ 529
Query: 179 GLDTVV--------------------------------ATNAVDAQSERIVQAAMVKLVT 206
GLDT+V AT+A+DA+SERIVQ A+ +++
Sbjct: 530 GLDTMVGEHGTQLSGGQKQRIAVARAILKDPRILLLDEATSALDAESERIVQEALDRIMV 589
Query: 207 NQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQEGAKEAQD 266
N+T V+VA+ L T+RNAD I ++ +GKIVEKG+H EL+ DPEGAYSQL+RLQE K+ +D
Sbjct: 590 NRTTVVVAHRLSTVRNADMIAVIHQGKIVEKGSHSELLRDPEGAYSQLIRLQEDTKQTED 649
Query: 267 ----KSLGVKHI----------------------LRGFPGPIGVYETAERSEDRIEKDPT 300
+ L ++ + + GFP I A +D P
Sbjct: 650 STDEQKLSMESMKRSSLRKSSLSRSLSKRSSSFSMFGFPAGIDTNNEAIPEKDIKVSTPI 709
Query: 301 EIEKRKKVSVTRLAYANRSEVP-------------------------------------- 322
K KKVS R+A N+ E+P
Sbjct: 710 ---KEKKVSFFRVAALNKPEIPMLILGSIAAVLNGVILPIFGILISSVIKAFFKPPEQLK 766
Query: 323 --------ILLIGSIAAVIVFP---IF-------------------------GLLLSTSI 346
I ++ +A+++VFP IF G T
Sbjct: 767 SDTRFWAIIFMLLGVASMVVFPAQTIFFSIAGCKLVQRIRSMCFEKVVRMEVGWFDETEN 826
Query: 347 NIGAVGARLSTDASAVRSVVGDALGLIIQNIATIAAGLVIAFTA-WKLAFITLAVPSLTI 405
+ GA+GARLS DA+ VR +VGDAL +QN+A++ AGLVIAF A W+LAFI LA+ L
Sbjct: 827 SSGAIGARLSADAATVRGLVGDALAQTVQNLASVTAGLVIAFVASWQLAFIVLAMLPLIG 886
Query: 406 AEGYL----------KKKKNYERLH------------INAFC------------------ 425
GY+ K+ YE + +FC
Sbjct: 887 LNGYIYMKFMVGFSADAKRMYEEASQVANDAVGSIRTVASFCAEEKVMKMYKKKCEGPMR 946
Query: 426 ----------------FFI-----------GSKLVEHGDATFGEVFKFLSEFGCFWCLES 458
FF+ G++LV+ G TF VF+ F+ L
Sbjct: 947 TGIRQGIVSGIGFGVSFFVLFSSYAASFYAGARLVDDGKTTFDSVFR------VFFALTM 1000
Query: 459 TAVA--------PNADKAKGSAASIFEILESKPKIDWSSKDGMTPSTVRGDIVFEH---- 506
AVA P++ KA +AASIF +++ + KID S + G V+GDI H
Sbjct: 1001 AAVAISQSSSLSPDSSKASNAAASIFAVIDRESKIDPSDESGRVLDNVKGDIELRHISFK 1060
Query: 507 ---------------------TVALVGENGNGKSTVISLAERFHNPE--QVIYSWIIIKC 543
T+ALVGE+G+GKSTVI+L +RF++P+ Q+ + IK
Sbjct: 1061 YPSRPDVQIFQDLCLSIRAGKTIALVGESGSGKSTVIALLQRFYDPDSGQITLDGVEIKT 1120
Query: 544 TN--------------------------------------------------FIASLPQG 553
FI+ L QG
Sbjct: 1121 LQLKWLRQQTGLVSQEPVLFNETIRANIAYGKGGDATETEIVSAAELSNAHGFISGLQQG 1180
Query: 554 SDLNVGERGLQLSGGLKQRIARTRA----------------------------------- 578
D VGERG+QLSGG KQR+A RA
Sbjct: 1181 YDTMVGERGVQLSGGQKQRVAIARAIVKDPKVLLLDEATSALDAESERVVQDALDRVMVN 1240
Query: 579 RNYCGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKITDGTYASLTALHMSS 632
R KNAD+ +VVKNGVI EKG+H+ L+ I DG YASL LH+S+
Sbjct: 1241 RTTVVVAHRLSTIKNADVIAVVKNGVIVEKGKHETLINIKDGVYASLVQLHLSA 1294
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M0M2|AB9B_ARATH ABC transporter B family member 9 OS=Arabidopsis thaliana GN=ABCB9 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 273 bits (699), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 212/541 (39%), Positives = 275/541 (50%), Gaps = 185/541 (34%)
Query: 47 MPLGQTSLNVNAFAAGQAAACKMFETIERIPKINPYDNR--------------------- 85
M LGQTS ++NAFAAG+AAA KMFETI+R PKI+ YD
Sbjct: 306 MSLGQTSPSLNAFAAGRAAAFKMFETIKRSPKIDAYDMSGSVLEDIRGDIELKDVYFRYP 365
Query: 86 ----------FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQ---------- 125
F VP+G TVALVGQSGSGKSTVI+L+E RFY PE+ Q
Sbjct: 366 ARPDVQIFAGFSLFVPNGKTVALVGQSGSGKSTVISLIE--RFYDPESGQVLIDNIDLKK 423
Query: 126 -------EKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPL 178
KIGLVS+EP+ E I YGK++A+D+ IR A++LANA K IDKLP
Sbjct: 424 LQLKWIRSKIGLVSQEPVLFATTIKEN--IAYGKEDATDQEIRTAIELANAAKFIDKLPQ 481
Query: 179 GLDTVV--------------------------------ATNAVDAQSERIVQAAMVKLVT 206
GLDT+V AT+A+DA+SERIVQ A+V L++
Sbjct: 482 GLDTMVGEHGTQMSGGQKQRLAIARAILKNPKILLLDEATSALDAESERIVQDALVNLMS 541
Query: 207 NQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQEGAKEAQ- 265
N+T V+VA+ L TIR AD I +V +GKIVEKGTHDE+I+DPEGAYSQLVRLQEG+KE
Sbjct: 542 NRTTVVVAHRLTTIRTADVIAVVHQGKIVEKGTHDEMIQDPEGAYSQLVRLQEGSKEEAT 601
Query: 266 -----DKSLGVKH--ILR--------------------------GFPGPIGVYETAERSE 292
+ SL V+ LR FPG + V +T
Sbjct: 602 ESERPETSLDVERSGSLRLSSAMRRSVSRNSSSSRHSFSLASNMFFPG-VNVNQT----- 655
Query: 293 DRIEKDPTEIEKRKKVSVTRLAYANRSEVPILLIGSIAAVI---VFPIFGLLLSTSINIG 349
D +E + + + KKVS+ RLA+ N+ E+P+L++GSIAA++ VFPIFGLLLS+SIN+
Sbjct: 656 DEMEDEENNV-RHKKVSLKRLAHLNKPEIPVLVLGSIAAMVHGTVFPIFGLLLSSSINMF 714
Query: 350 AVGARLSTDASAVRSVVGDALGLI------IQN--------------------------- 376
A++ S +++ ALGL +QN
Sbjct: 715 YEPAKILKKDSHFWALIYIALGLTNFVMIPVQNYFFGIAGGKLIKRIRSMCFDKVVHQEI 774
Query: 377 -----------------------IATIAAGLVIAFTA-WKLAFITLAVPSLTIAEGYLKK 412
IAT+ GL+IAFTA W LA I LA+ + +GY +
Sbjct: 775 SWFDDTANSRSLVGDALALIVQNIATVTTGLIIAFTANWILALIVLALSPFIVIQGYAQT 834
Query: 413 K 413
K
Sbjct: 835 K 835
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FHF1|AB7B_ARATH ABC transporter B family member 7 OS=Arabidopsis thaliana GN=ABCB7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 267 bits (682), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 178/407 (43%), Positives = 227/407 (55%), Gaps = 109/407 (26%)
Query: 47 MPLGQTSLNVNAFAAGQAAACKMFETIERIPKINPYDNR--------------------- 85
M LGQT ++N+FAAG AAA KMFETI+R PKI+ YD
Sbjct: 308 MALGQTLPSLNSFAAGTAAAYKMFETIKRKPKIDAYDMSGEVLEEIKGDIELRDVYFRYP 367
Query: 86 ----------FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQ---------- 125
F VP+G TVALVGQSGSGKSTVI+L+E RFY PE+ +
Sbjct: 368 ARPDVQIFVGFSLTVPNGMTVALVGQSGSGKSTVISLIE--RFYDPESGEVLIDGIDLKK 425
Query: 126 -------EKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPL 178
KIGLVS+EPI E I YGK++ASD+ IR A++LANA IDKLP
Sbjct: 426 FQVKWIRSKIGLVSQEPILFATTIREN--IVYGKKDASDQEIRTALKLANASNFIDKLPQ 483
Query: 179 GLDTVV--------------------------------ATNAVDAQSERIVQAAMVKLVT 206
GL+T+V AT+A+DA+SERIVQ A+VKL+
Sbjct: 484 GLETMVGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKLML 543
Query: 207 NQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQEGAK--EA 264
++T V+VA+ L TIR AD I +V +GK++EKGTHDE+I+DPEG YSQLVRLQEG+K EA
Sbjct: 544 SRTTVVVAHRLTTIRTADMIAVVQQGKVIEKGTHDEMIKDPEGTYSQLVRLQEGSKKEEA 603
Query: 265 QDK-------SL-------------GVKHILRGFPGPIGVYETAERSEDRIEKDPTEIEK 304
DK SL G G PG I + +T E E+ ++K
Sbjct: 604 IDKEPEKCEMSLEIESSDSQNGIHSGTLTSPSGLPGVISLDQTEEFHENISSTKTQTVKK 663
Query: 305 RKKVSVTRLAYANRSEVPILLIGSIAAV---IVFPIFGLLLSTSINI 348
K+VS+ RLA+ N+ E+ +LL+GS+AAV IVFP+ GLLLS +I I
Sbjct: 664 GKEVSLRRLAHLNKPEISVLLLGSLAAVIHGIVFPVQGLLLSRTIRI 710
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O80725|AB4B_ARATH ABC transporter B family member 4 OS=Arabidopsis thaliana GN=ABCB4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 224 bits (571), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 161/418 (38%), Positives = 220/418 (52%), Gaps = 123/418 (29%)
Query: 47 MPLGQTSLNVNAFAAGQAAACKMFETIERIPKINPYDNR--------------------- 85
M LGQTS ++AFAAGQAAA KMFETIER P I+ Y
Sbjct: 335 MSLGQTSPCLSAFAAGQAAAYKMFETIERRPNIDSYSTNGKVLDDIKGDIELKDVYFTYP 394
Query: 86 ----------FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAE----------- 124
F + SGTTVALVGQSGSGKSTV++L+E RFY P+A
Sbjct: 395 ARPDEQIFRGFSLFISSGTTVALVGQSGSGKSTVVSLIE--RFYDPQAGDVLIDGINLKE 452
Query: 125 ------QEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPL 178
+ KIGLVS+EP+ + I YGK++A+ E I+ A +LANA K +DKLP
Sbjct: 453 FQLKWIRSKIGLVSQEPVLFTASIKDN--IAYGKEDATTEEIKAAAELANASKFVDKLPQ 510
Query: 179 GLDTVV--------------------------------ATNAVDAQSERIVQAAMVKLVT 206
GLDT+V AT+A+DA+SER+VQ A+ +++
Sbjct: 511 GLDTMVGEHGTQLSGGQKQRIAVARAILKDPRILLLDEATSALDAESERVVQEALDRIMV 570
Query: 207 NQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQEGAKEAQD 266
N+T V+VA+ L T+RNAD I ++ +GKIVEKG+H EL++DPEGAYSQL+RLQE K ++
Sbjct: 571 NRTTVVVAHRLSTVRNADMIAVIHQGKIVEKGSHTELLKDPEGAYSQLIRLQEEKKSDEN 630
Query: 267 --------------------KSLG-------------VKHILRGFPGPIGVYETAERSED 293
SLG +H F P G+ +D
Sbjct: 631 AAEEQKMSSIESFKQSSLRKSSLGRSLSKGGSSRGNSSRHSFNMFGFPAGI--DGNVVQD 688
Query: 294 RIEKDPTEIEKR-KKVSVTRLAYANRSEVPILLIGSIAAV---IVFPIFGLLLSTSIN 347
+ E D T+ + KKVS+ R+A N+ E+P+L++GSI+A ++ PIFG+L+S+ I
Sbjct: 689 QEEDDTTQPKTEPKKVSIFRIAALNKPEIPVLILGSISAAANGVILPIFGILISSVIK 746
|
Auxin influx transporter that mediates the transport of auxin in roots. Contributes to the basipetal transport in hypocotyls and root tips by establishing an auxin uptake sink in the root cap. Confers sensitivity to 1-N-naphthylphthalamic acid (NPA). Regulates the root elongation, the initiation of lateral roots and the development of root hairs. Can transports IAA, indole-3-propionic acid, NPA syringic acid, vanillic acid and some auxin metabolites, but not 2,4-D and 1-naphthaleneacetic acid. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SYI3|AB5B_ARATH ABC transporter B family member 5 OS=Arabidopsis thaliana GN=ABCB5 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 221 bits (563), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 154/408 (37%), Positives = 209/408 (51%), Gaps = 131/408 (32%)
Query: 47 MPLGQTSLNVNAFAAGQAAACKMFETIERIPKINPYD----------------------- 83
+ LGQ S + AF AG+AAA KMFETIER P I+ +D
Sbjct: 304 IALGQASPCLTAFTAGKAAAYKMFETIEREPLIDTFDLNGKVLEDIRGEIELRDVCFSYP 363
Query: 84 --------NRFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQ---------- 125
F +PSGTT ALVG+SGSGKSTVI+L+E RFY P + Q
Sbjct: 364 ARPKEEVFGGFSLLIPSGTTTALVGESGSGKSTVISLIE--RFYDPNSGQVLIDGVDLKE 421
Query: 126 -------EKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPL 178
KIGLVS+EP+ E I YGK+ A+ E I+ A +LANA K IDKLPL
Sbjct: 422 FQLKWIRGKIGLVSQEPVLFSSSIMEN--IGYGKEGATVEEIQAASKLANAAKFIDKLPL 479
Query: 179 GLDTVV--------------------------------ATNAVDAQSERIVQAAMVKLVT 206
GL+T+V AT+A+DA+SER+VQ A+ +++
Sbjct: 480 GLETLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDRIMV 539
Query: 207 NQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQEGAKEAQ- 265
N+T VIVA+ L T+RNAD I ++ +GKIVE+G+H EL++D EGAYSQL+RLQE KE++
Sbjct: 540 NRTTVIVAHRLSTVRNADIIAVIHRGKIVEEGSHSELLKDHEGAYSQLLRLQEINKESKR 599
Query: 266 ----------------------DKSLGVKHILRGFPGPIGVYETAERSEDRIEKDPTEI- 302
D S V +L G +D T++
Sbjct: 600 LEISDGSISSGSSRGNNSTRQDDDSFSVLGLLAG-------------------QDSTKMS 640
Query: 303 -EKRKKVSVTRLAYANRSEVPILLIGSIAAVI---VFPIFGLLLSTSI 346
E +KVS TR+A N+ E+PIL++G++ + +FPIFG+L + I
Sbjct: 641 QELSQKVSFTRIAALNKPEIPILILGTLVGAVNGTIFPIFGILFAKVI 688
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FWX7|AB11B_ARATH ABC transporter B family member 11 OS=Arabidopsis thaliana GN=ABCB11 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 217 bits (553), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 158/408 (38%), Positives = 216/408 (52%), Gaps = 112/408 (27%)
Query: 47 MPLGQTSLNVNAFAAGQAAACKMFETIERIPKINPYD----------------------- 83
M LGQTS V AFAAGQAAA KMFETI+R P I+ YD
Sbjct: 332 MSLGQTSPCVTAFAAGQAAAYKMFETIKRKPLIDAYDVNGKVLEDIRGDIELKDVHFSYP 391
Query: 84 --------NRFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAE----------- 124
+ F +PSG T ALVG+SGSGKSTVI+L+E RFY P++
Sbjct: 392 ARPDEEIFDGFSLFIPSGATAALVGESGSGKSTVISLIE--RFYDPKSGAVLIDGVNLKE 449
Query: 125 ------QEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPL 178
+ KIGLVS+EP+ E I YGK+NA+ E I+ A +LANA K IDKLP
Sbjct: 450 FQLKWIRSKIGLVSQEPVLFSSSIMEN--IAYGKENATVEEIKAATELANAAKFIDKLPQ 507
Query: 179 GLDTVV--------------------------------ATNAVDAQSERIVQAAMVKLVT 206
GLDT+V AT+A+DA+SER+VQ A+ +++
Sbjct: 508 GLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDRVMV 567
Query: 207 NQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQEGAKEAQD 266
N+T VIVA+ L T+RNAD I ++ +GK+VEKG+H EL++D EGAYSQL+RLQE K+ +
Sbjct: 568 NRTTVIVAHRLSTVRNADMIAVIHRGKMVEKGSHSELLKDSEGAYSQLIRLQEINKDVKT 627
Query: 267 KSLGV------KHILRGFPGPIGVYETAER----------------SEDRIEKDPTEIEK 304
L ++ + G V ++ R +D T
Sbjct: 628 SELSSGSSFRNSNLKKSMEGTSSVGNSSRHHSLNVLGLTTGLDLGSHSQRAGQDETGTAS 687
Query: 305 RK---KVSVTRLAYANRSEVPILLIGSIAAVI---VFPIFGLLLSTSI 346
++ KVS+TR+A N+ E+P+LL+G++AA I +FP+FG+L+S I
Sbjct: 688 QEPLPKVSLTRIAALNKPEIPVLLLGTVAAAINGAIFPLFGILISRVI 735
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8LPK2|AB2B_ARATH ABC transporter B family member 2 OS=Arabidopsis thaliana GN=ABCB2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 199 bits (506), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 239/929 (25%), Positives = 354/929 (38%), Gaps = 358/929 (38%)
Query: 47 MPLGQTSLNVNAFAAGQAAACKMFETIER------------------------------- 75
+ LGQ + +++AF +AAA +F+ IER
Sbjct: 352 LSLGQAAPDISAFVRAKAAAYPIFKMIERNTVTKTSAKSGRKLGKVDGHIQFKDATFSYP 411
Query: 76 -IPKINPYDNRFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAP------------- 121
P + +D R +P+G VALVG SGSGKSTVI+L+E RFY P
Sbjct: 412 SRPDVVIFD-RLNLAIPAGKIVALVGGSGSGKSTVISLIE--RFYEPISGAVLLDGNNIS 468
Query: 122 ----EAEQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLP 177
+ + +IGLV++EP E I YGK +A+ E I A +L+ A I+ LP
Sbjct: 469 ELDIKWLRGQIGLVNQEPALFATTIREN--ILYGKDDATAEEITRAAKLSEAISFINNLP 526
Query: 178 LGLDTVV--------------------------------ATNAVDAQSERIVQAAMVKLV 205
G +T V AT+A+DA+SE+ VQ A+ +++
Sbjct: 527 EGFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRVM 586
Query: 206 TNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQEGAKEAQ 265
+T V+VA+ L T+RNAD I +V +GKIVE G H+ LI +P+GAYS L+RLQE A +
Sbjct: 587 VGRTTVVVAHRLSTVRNADIIAVVHEGKIVEFGNHENLISNPDGAYSSLLRLQETASLQR 646
Query: 266 DKSLGVKHILRGFPGPIGVYETAERSEDR----------IEKDPTEIEKRKKVSVTRL-- 313
+ SL R P + + E S R D + K+ KV+V RL
Sbjct: 647 NPSLN-----RTLSRPHSIKYSRELSRTRSSFCSERESVTRPDGADPSKKVKVTVGRLYS 701
Query: 314 ---------------AYANRSEVPILLIG-----------------------------SI 329
A+ S++P+ +G S+
Sbjct: 702 MIRPDWMYGVCGTICAFIAGSQMPLFALGVSQALVSYYSGWDETQKEIKKIAILFCCASV 761
Query: 330 AAVIVFPI----FG-----LLLSTSINI-------------------GAVGARLSTDASA 361
+IV+ I FG L L N+ + +RL +DA+
Sbjct: 762 ITLIVYTIEHICFGTMGERLTLRVRENMFRAILKNEIGWFDEVDNTSSMLASRLESDATL 821
Query: 362 VRSVVGDALGLIIQNIATIAAGLVIAFTA-WKLAFITLAVPSLTIA-------------- 406
++++V D +++QN+ + +IAF W+L + LA L I+
Sbjct: 822 LKTIVVDRSTILLQNLGLVVTSFIIAFILNWRLTLVVLATYPLVISGHISEKLFMQGYGG 881
Query: 407 ---EGYLK-----------------------------------KKKNYERLHINAFC--- 425
+ YLK K ++ R I
Sbjct: 882 DLNKAYLKANMLAGESVSNIRTVAAFCAEEKILELYSRELLEPSKSSFRRGQIAGLFYGV 941
Query: 426 --FFI----------GSKLVEHGDATFGEVFK-FLSEFGCFWCL-ESTAVAPNADKAKGS 471
FFI GS L++ G A F V K F+ + E+ A+AP+ K
Sbjct: 942 SQFFIFSSYGLALWYGSTLMDKGLAGFKSVMKTFMVLIVTALAMGETLALAPDLLKGNQM 1001
Query: 472 AASIFEILESKPKIDWSSKDGMT---------------PSTVRGDIV----FE------H 506
AS+FEIL+ K +I + + + PS R D+V F+
Sbjct: 1002 VASVFEILDRKTQIVGETSEELNNVEGTIELKGVHFSYPS--RPDVVIFRDFDLIVRAGK 1059
Query: 507 TVALVGENGNGKSTVISLAERFHNP----------------------------------- 531
++ALVG++G+GKS+VISL RF++P
Sbjct: 1060 SMALVGQSGSGKSSVISLILRFYDPTAGKVMIEGKDIKKLDLKALRKHIGLVQQEPALFA 1119
Query: 532 ----EQVIY------------SWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIAR 575
E ++Y S ++ +FI SLP+G VGERG+Q+SGG +QRIA
Sbjct: 1120 TTIYENILYGNEGASQSEVVESAMLANAHSFITSLPEGYSTKVGERGVQMSGGQRQRIAI 1179
Query: 576 TRA-----------------------------------RNYCGCGSPPYHYKNADITSVV 600
RA R KNAD SV+
Sbjct: 1180 ARAILKNPAILLLDEATSALDVESERVVQQALDRLMANRTTVVVAHRLSTIKNADTISVL 1239
Query: 601 KNGVIAEKGRHDALMKITDGTYASLTALH 629
G I E+G H L+ G Y L +L
Sbjct: 1240 HGGKIVEQGSHRKLVLNKSGPYFKLISLQ 1268
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FWX8|AB12B_ARATH ABC transporter B family member 12 OS=Arabidopsis thaliana GN=ABCB12 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 198 bits (503), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 153/421 (36%), Positives = 205/421 (48%), Gaps = 130/421 (30%)
Query: 47 MPLGQTSLNVNAFAAGQAAACKMFETIERIPKINPYD----------------------- 83
M LGQTS V AFAAGQAAA KMFETI+R P I+ YD
Sbjct: 319 MSLGQTSPCVTAFAAGQAAAYKMFETIKRKPLIDAYDVNGKVLGDIRGDIELKDVHFSYP 378
Query: 84 --------NRFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQ---------- 125
+ F +PSG T ALVG+SGSGKSTVINL+E RFY P+A +
Sbjct: 379 ARPDEEIFDGFSLFIPSGATAALVGESGSGKSTVINLIE--RFYDPKAGEVLIDGINLKE 436
Query: 126 -------EKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPL 178
KIGLV +EP+ E I YGK+NA+ + I+ A +LANA K I+ LP
Sbjct: 437 FQLKWIRSKIGLVCQEPVLFSSSIMEN--IAYGKENATLQEIKVATELANAAKFINNLPQ 494
Query: 179 GLDTVV--------------------------------ATNAVDAQSERIVQAAMVKLVT 206
GLDT V AT+A+D +SER+VQ A+ +++
Sbjct: 495 GLDTKVGEHGTQLSGGQKQRIAIARAILKDPRVLLLDEATSALDTESERVVQEALDRVMV 554
Query: 207 NQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQEGAK---- 262
N+T V+VA+ L T+RNAD I ++ GK+VEKG+H EL++D GAYSQL+R QE K
Sbjct: 555 NRTTVVVAHRLSTVRNADMIAVIHSGKMVEKGSHSELLKDSVGAYSQLIRCQEINKGHDA 614
Query: 263 ----------------------------------EAQDKSLGVKHILRGFPGPIGVYETA 288
++ SL V + G G
Sbjct: 615 KPSDMASGSSFRNSNLNISREGSVISGGTSSFGNSSRHHSLNVLGLFAGLDLGSGSQRVG 674
Query: 289 ERSEDRIEKDPTEIEKRKKVSVTRLAYANRSEVPILLIGSIAAVI---VFPIFGLLLSTS 345
+ E T E +KVS+TR+A N+ E+P+LL+G++ A I +FP+FG+L+S
Sbjct: 675 QE-----ETGTTSQEPLRKVSLTRIAALNKPEIPVLLLGTVVAAINGAIFPLFGILISRV 729
Query: 346 I 346
I
Sbjct: 730 I 730
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SYI2|AB3B_ARATH ABC transporter B family member 3 OS=Arabidopsis thaliana GN=ABCB3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 188 bits (478), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 150/396 (37%), Positives = 211/396 (53%), Gaps = 103/396 (26%)
Query: 47 MPLGQTSLNVNAFAAGQAAACKMFETIERIPKINPYD----------------------- 83
M LGQT+ + AFAAG+AAA KMFETIER P I+ +D
Sbjct: 299 MSLGQTTPCLTAFAAGKAAAYKMFETIERKPSIDAFDLNGKVLEDIRGEIELRDVCFSYP 358
Query: 84 --------NRFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAE----------- 124
F +PSG T ALVG+SGSGKS+VI+L+E RFY P +
Sbjct: 359 ARPMEEVFGGFSLLIPSGATAALVGESGSGKSSVISLIE--RFYDPSSGSVLIDGVNLKE 416
Query: 125 ------QEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPL 178
+ KIGLVS+EP+ E I YGK+NA+ E I+ A +LANA IDKLP
Sbjct: 417 FQLKWIRGKIGLVSQEPVLFSSSIMEN--IGYGKENATVEEIQAAAKLANAANFIDKLPR 474
Query: 179 GLDTVV--------------------------------ATNAVDAQSERIVQAAMVKLVT 206
GL+T+V AT+A+DA+SER+VQ A+ +++
Sbjct: 475 GLETLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDRVMM 534
Query: 207 NQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQEGAKEAQ- 265
++T VIVA+ L T+RNAD I ++ +GKIVE+G+H EL++D EGAY+QL+RLQ+ KE +
Sbjct: 535 SRTTVIVAHRLSTVRNADMIAVIHRGKIVEEGSHSELLKDHEGAYAQLIRLQKIKKEPKR 594
Query: 266 ---DKSLGVKHILRGFPGPIGVYETAERSEDRI-------EKDPTEI--EKRKKVSVTRL 313
L + I RG I T +D + ++ TEI E+ + VS+TR+
Sbjct: 595 LESSNELRDRSINRGSSRNI---RTRVHDDDSVSVLGLLGRQENTEISREQSRNVSITRI 651
Query: 314 AYANRSEVPILLIGSIAAVI---VFPIFGLLLSTSI 346
A N+ E IL++G++ + +FPIFG+L + I
Sbjct: 652 AALNKPETTILILGTLLGAVNGTIFPIFGILFAKVI 687
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SGY1|AB10B_ARATH ABC transporter B family member 10 OS=Arabidopsis thaliana GN=ABCB10 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 149 bits (377), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 118/375 (31%), Positives = 178/375 (47%), Gaps = 90/375 (24%)
Query: 47 MPLGQTSLNVNAFAAGQAAACKMFETIER----------------------------IPK 78
+ LGQ + +++ F AAA +F+ IER P
Sbjct: 316 LSLGQAAPDISTFMRASAAAYPIFQMIERNTEDKTGRKLGNVNGDILFKDVTFTYPSRPD 375
Query: 79 INPYDN-RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAP---------------- 121
+ +D F+ +P+G VALVG SGSGKST+I+L+E RFY P
Sbjct: 376 VVIFDKLNFV--IPAGKVVALVGGSGSGKSTMISLIE--RFYEPTDGAVMLDGNDIRYLD 431
Query: 122 -EAEQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGL 180
+ + IGLV++EP+ E I YGK +A+ E I A +L+ A I+ LP G
Sbjct: 432 LKWLRGHIGLVNQEPVLFATTIREN--IMYGKDDATSEEITNAAKLSEAISFINNLPEGF 489
Query: 181 DTVV--------------------------------ATNAVDAQSERIVQAAMVKLVTNQ 208
+T V AT+A+DA+SE+IVQ A+ +++ +
Sbjct: 490 ETQVGERGIQLSGGQKQRISISRAIVKNPSILLLDEATSALDAESEKIVQEALDRVMVGR 549
Query: 209 TVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQEGAKEAQDKS 268
T V+VA+ L T+RNAD I +V GKI+E G+HDELI +P+GAYS L+R+QE A + +
Sbjct: 550 TTVVVAHRLSTVRNADIIAVVGGGKIIESGSHDELISNPDGAYSSLLRIQEAASPNLNHT 609
Query: 269 LGVKHILRGFPGPIGVYETAERSEDRIEKDPTEIEKRKKVSVTRLAYANRSEVPILLIGS 328
+ + P + + ET + + T K+ KV+V RL R + L G+
Sbjct: 610 PSLPVSTKPLP-ELPITETTSSIHQSVNQPDT--TKQAKVTVGRLYSMIRPDWKYGLCGT 666
Query: 329 IAAVIV---FPIFGL 340
+ + I P+F L
Sbjct: 667 LGSFIAGSQMPLFAL 681
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 632 | ||||||
| 297804378 | 1239 | P-glycoprotein 9 [Arabidopsis lyrata sub | 0.911 | 0.464 | 0.375 | 1e-121 | |
| 334186202 | 1296 | ABC transporter B family member 21 [Arab | 0.906 | 0.442 | 0.315 | 1e-87 | |
| 297740623 | 2405 | unnamed protein product [Vitis vinifera] | 0.534 | 0.140 | 0.419 | 9e-79 | |
| 297736819 | 2226 | unnamed protein product [Vitis vinifera] | 0.797 | 0.226 | 0.309 | 1e-76 | |
| 224116786 | 1255 | multidrug/pheromone exporter, MDR family | 0.462 | 0.232 | 0.440 | 6e-76 | |
| 297740622 | 1930 | unnamed protein product [Vitis vinifera] | 0.632 | 0.207 | 0.407 | 9e-75 | |
| 147796332 | 2006 | hypothetical protein VITISV_009891 [Viti | 0.531 | 0.167 | 0.413 | 8e-72 | |
| 240255983 | 1236 | P-glycoprotein 9 [Arabidopsis thaliana] | 0.563 | 0.288 | 0.391 | 2e-70 | |
| 359483592 | 1263 | PREDICTED: ABC transporter B family memb | 0.471 | 0.235 | 0.425 | 1e-69 | |
| 15237456 | 1248 | ABC transporter B family member 7 [Arabi | 0.471 | 0.238 | 0.437 | 2e-68 |
| >gi|297804378|ref|XP_002870073.1| P-glycoprotein 9 [Arabidopsis lyrata subsp. lyrata] gi|297315909|gb|EFH46332.1| P-glycoprotein 9 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 354/943 (37%), Positives = 442/943 (46%), Gaps = 367/943 (38%)
Query: 47 MPLGQTSLNVNAFAAGQAAACKMFETIERIPKINPYDNR--------------------- 85
M LGQTS ++NAFAAG+AAA KMFETI+R PKI+ YD
Sbjct: 306 MSLGQTSPSLNAFAAGRAAAFKMFETIKRTPKIDAYDMSGSVLEDIRGDIELKDVYFRYP 365
Query: 86 ----------FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQ---------- 125
F V +GTTVALVGQSGSGKSTVI+L+E RFY PE+ Q
Sbjct: 366 ARPDVQIFAGFSLFVSNGTTVALVGQSGSGKSTVISLIE--RFYDPESGQVLIDNIDLKK 423
Query: 126 -------EKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPL 178
KIGLVS+EP+ E I YGK++A+D+ IR A++LANA K IDKLP
Sbjct: 424 LQLKWIRSKIGLVSQEPVLFATTIREN--IAYGKEDATDQEIRTAIELANAAKFIDKLPQ 481
Query: 179 GLDTVV--------------------------------ATNAVDAQSERIVQAAMVKLVT 206
GLDT+V AT+A+DA+SERIVQ A+V L++
Sbjct: 482 GLDTMVGEHGTQMSGGQKQRLAIARAILKNPKILLLDEATSALDAESERIVQDALVNLMS 541
Query: 207 NQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQEGAKEAQD 266
N+T V+VA+ L TIR AD I +V +GKIVEKGTHD++I++PEGAYSQLVRLQEG+KE +
Sbjct: 542 NRTTVVVAHRLTTIRTADVIAVVHQGKIVEKGTHDDMIQNPEGAYSQLVRLQEGSKEEAN 601
Query: 267 KS------LGVK----HILRG------------------------FPGPIGVYETAERSE 292
+S L V+ H L FPG + + +T
Sbjct: 602 ESERPETSLDVERSGSHRLSSAMRRSVSRNSSSSRHSFSLASNIFFPGAVNINQT----- 656
Query: 293 DRIEKDPTEIEKRKKVSVTRLAYANRSEVPILLIGSIAAVI---VFPIFGLLLSTSINI- 348
D IE D + + KKVS+ RLA N+ E+P+LL+GSIAA++ +FPIFGLLLS+SIN+
Sbjct: 657 DEIE-DEEKTVRHKKVSLKRLARLNKPEIPVLLLGSIAAMVHGTLFPIFGLLLSSSINMF 715
Query: 349 ------------------------------------GAVGARL----------------- 355
G G +L
Sbjct: 716 YEPAKILKKDSHFWALIYIALGLANFFMIPIQNYFFGIAGGKLIKRIRSMCFDKVVHQEI 775
Query: 356 ----STDASAVRSVVGDALGLIIQNIATIAAGLVIAFTA-WKLA--------FITL---- 398
T S+VRS+VGDAL LI+QNIAT+ GL+IAFTA W LA FI +
Sbjct: 776 SWFDDTANSSVRSLVGDALALIVQNIATVTTGLIIAFTANWMLALIVLALSPFIVIQGYA 835
Query: 399 -------------------------AVPSLTI-----AEG-----YLKK----KKNYERL 419
AV S+ AEG Y +K KKN RL
Sbjct: 836 QTKFLTGFSADAKAMYEEASQVANDAVSSIRTVASFCAEGKVMDLYQQKCDGPKKNGVRL 895
Query: 420 H----------------INAFCFFIGSKLVEHGDATFGEVFK--FLSEFGCFWCLESTAV 461
IN CF G+ L++ G ATFGEVFK F +++A+
Sbjct: 896 GLLSGAGFGFSFFFLYCINCVCFVSGAGLIQIGKATFGEVFKVFFALTIMAIGVSQTSAM 955
Query: 462 APNADKAKGSAASIFEILESKPKIDWSSKDGMTPSTVRGDIVFEH--------------- 506
AP+ +KAK SAASIF+IL+SKPKID SS +G T V GDI F H
Sbjct: 956 APDTNKAKDSAASIFDILDSKPKIDSSSDEGTTLQNVHGDIEFRHVSFRYPMRPDVQIFR 1015
Query: 507 ----------TVALVGENGNGKSTVISLAERFHNP------------------------- 531
TVALVGE+G+GKSTVIS+ ERF+NP
Sbjct: 1016 DLCLTIPSGKTVALVGESGSGKSTVISMIERFYNPDSGKILIDQVEIQTFKLSWLRQQMG 1075
Query: 532 ---------------------------EQVIYSWIIIKCTNFIASLPQGSDLNVGERGLQ 564
E++I + NFI+SLPQG D +VGERG+Q
Sbjct: 1076 LVSQEPILFNETIRSNIAYGKTGGATEEEIIAAAQAANAHNFISSLPQGYDTSVGERGVQ 1135
Query: 565 LSGGLKQRIARTRA-----------------------------------RNYCGCGSPPY 589
LSGG KQRIA RA R
Sbjct: 1136 LSGGQKQRIAIARAILKDPKILLLDEATSALDAESERVVQDALDRVMVNRTTVVVAHRLT 1195
Query: 590 HYKNADITSVVKNGVIAEKGRHDALMKITDGTYASLTALHMSS 632
KNAD+ +VVKNGVIAEKGRH+ LMKI+ G YASL LHMS+
Sbjct: 1196 TIKNADVIAVVKNGVIAEKGRHETLMKISGGAYASLVTLHMSA 1238
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334186202|ref|NP_191774.2| ABC transporter B family member 21 [Arabidopsis thaliana] gi|374095360|sp|Q9M1Q9.2|AB21B_ARATH RecName: Full=ABC transporter B family member 21; Short=ABC transporter ABCB.21; Short=AtABCB21; AltName: Full=Multidrug resistance protein 17; AltName: Full=P-glycoprotein 21 gi|332646795|gb|AEE80316.1| ABC transporter B family member 21 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 330 bits (847), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 301/954 (31%), Positives = 403/954 (42%), Gaps = 381/954 (39%)
Query: 47 MPLGQTSLNVNAFAAGQAAACKMFETIERIPKINPYDNR--------------------- 85
M LGQ S ++AFAAGQAAA KMFE I+R P+I+ D
Sbjct: 354 MSLGQASPCLSAFAAGQAAAYKMFEAIKRKPEIDASDTTGKVLDDIRGDIELNNVNFSYP 413
Query: 86 ----------FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQ---------- 125
F + SG+TVALVGQSGSGKSTV++L+E RFY P++ +
Sbjct: 414 ARPEEQIFRGFSLSISSGSTVALVGQSGSGKSTVVSLIE--RFYDPQSGEVRIDGINLKE 471
Query: 126 -------EKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPL 178
KIGLVS+EP+ E I YGK+NA+ E IR A +LANA K IDKLP
Sbjct: 472 FQLKWIRSKIGLVSQEPVLFTSSIKEN--IAYGKENATVEEIRKATELANASKFIDKLPQ 529
Query: 179 GLDTVV--------------------------------ATNAVDAQSERIVQAAMVKLVT 206
GLDT+V AT+A+DA+SERIVQ A+ +++
Sbjct: 530 GLDTMVGEHGTQLSGGQKQRIAVARAILKDPRILLLDEATSALDAESERIVQEALDRIMV 589
Query: 207 NQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQEGAKEAQD 266
N+T V+VA+ L T+RNAD I ++ +GKIVEKG+H EL+ DPEGAYSQL+RLQE K+ +D
Sbjct: 590 NRTTVVVAHRLSTVRNADMIAVIHQGKIVEKGSHSELLRDPEGAYSQLIRLQEDTKQTED 649
Query: 267 ----KSLGVKHI----------------------LRGFPGPIGVYETAERSEDRIEKDPT 300
+ L ++ + + GFP I A +D P
Sbjct: 650 STDEQKLSMESMKRSSLRKSSLSRSLSKRSSSFSMFGFPAGIDTNNEAIPEKDIKVSTPI 709
Query: 301 EIEKRKKVSVTRLAYANRSEVP-------------------------------------- 322
K KKVS R+A N+ E+P
Sbjct: 710 ---KEKKVSFFRVAALNKPEIPMLILGSIAAVLNGVILPIFGILISSVIKAFFKPPEQLK 766
Query: 323 --------ILLIGSIAAVIVFP---IF-------------------------GLLLSTSI 346
I ++ +A+++VFP IF G T
Sbjct: 767 SDTRFWAIIFMLLGVASMVVFPAQTIFFSIAGCKLVQRIRSMCFEKVVRMEVGWFDETEN 826
Query: 347 NIGAVGARLSTDASAVRSVVGDALGLIIQNIATIAAGLVIAFTA-WKLAFITLAVPSLTI 405
+ GA+GARLS DA+ VR +VGDAL +QN+A++ AGLVIAF A W+LAFI LA+ L
Sbjct: 827 SSGAIGARLSADAATVRGLVGDALAQTVQNLASVTAGLVIAFVASWQLAFIVLAMLPLIG 886
Query: 406 AEGYL----------KKKKNYERLH------------INAFC------------------ 425
GY+ K+ YE + +FC
Sbjct: 887 LNGYIYMKFMVGFSADAKRMYEEASQVANDAVGSIRTVASFCAEEKVMKMYKKKCEGPMR 946
Query: 426 ----------------FFI-----------GSKLVEHGDATFGEVFKFLSEFGCFWCLES 458
FF+ G++LV+ G TF VF+ F+ L
Sbjct: 947 TGIRQGIVSGIGFGVSFFVLFSSYAASFYAGARLVDDGKTTFDSVFR------VFFALTM 1000
Query: 459 TAVA--------PNADKAKGSAASIFEILESKPKIDWSSKDGMTPSTVRGDIVFEH---- 506
AVA P++ KA +AASIF +++ + KID S + G V+GDI H
Sbjct: 1001 AAVAISQSSSLSPDSSKASNAAASIFAVIDRESKIDPSDESGRVLDNVKGDIELRHISFK 1060
Query: 507 ---------------------TVALVGENGNGKSTVISLAERFHNPE--QVIYSWIIIKC 543
T+ALVGE+G+GKSTVI+L +RF++P+ Q+ + IK
Sbjct: 1061 YPSRPDVQIFQDLCLSIRAGKTIALVGESGSGKSTVIALLQRFYDPDSGQITLDGVEIKT 1120
Query: 544 TN--------------------------------------------------FIASLPQG 553
FI+ L QG
Sbjct: 1121 LQLKWLRQQTGLVSQEPVLFNETIRANIAYGKGGDATETEIVSAAELSNAHGFISGLQQG 1180
Query: 554 SDLNVGERGLQLSGGLKQRIARTRA----------------------------------- 578
D VGERG+QLSGG KQR+A RA
Sbjct: 1181 YDTMVGERGVQLSGGQKQRVAIARAIVKDPKVLLLDEATSALDAESERVVQDALDRVMVN 1240
Query: 579 RNYCGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKITDGTYASLTALHMSS 632
R KNAD+ +VVKNGVI EKG+H+ L+ I DG YASL LH+S+
Sbjct: 1241 RTTVVVAHRLSTIKNADVIAVVKNGVIVEKGKHETLINIKDGVYASLVQLHLSA 1294
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297740623|emb|CBI30805.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 301 bits (770), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 213/508 (41%), Positives = 263/508 (51%), Gaps = 170/508 (33%)
Query: 47 MPLGQTSLNVNAFAAGQAAACKMFETIERIPKINPYDNR--------------------- 85
M LGQ S ++AF AGQAAA KMFETI+R PKIN YD
Sbjct: 311 MALGQASPCLSAFGAGQAAAYKMFETIKRKPKINAYDTNGVVLEEIMGEIELKDVYFKYP 370
Query: 86 ----------FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQ---------- 125
F ++PSGTT ALVGQSGSGKSTVI+L+E RFY PEA +
Sbjct: 371 ARPEVQIFSGFSLNIPSGTTAALVGQSGSGKSTVISLLE--RFYDPEAGEVLIDGVNLKK 428
Query: 126 -------EKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPL 178
KIGLVS+EPI E I YGK+ A+DE IR A++LANA K IDK+P
Sbjct: 429 INLRWIRGKIGLVSQEPILFAATIKEN--ISYGKEKATDEEIRTAIKLANAAKFIDKMPT 486
Query: 179 GLDTVV--------------------------------ATNAVDAQSERIVQAAMVKLVT 206
GLDT+V AT+A+DA+SERIVQ A+ ++
Sbjct: 487 GLDTMVGEHGTQLSGGQKQRIAIARAILKNPRILLLDEATSALDAESERIVQDALQNIMV 546
Query: 207 NQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQEGAKEAQD 266
N+T VIVA+ L TIRNAD I +V +GKIVE+GTH ELI DP+GAYSQLVRLQEG + +D
Sbjct: 547 NRTTVIVAHRLTTIRNADNIAVVHQGKIVEQGTHMELIRDPDGAYSQLVRLQEGHNQVED 606
Query: 267 -----KSLGVKH---ILRGFPGPIGVYETAERSEDRIEKDPTEIEKRKKVSVTRLAYANR 318
S V H + G P DPT VS+ RLAY N+
Sbjct: 607 AQSRVNSPSVHHSYSLSSGIP------------------DPT-------VSLIRLAYLNK 641
Query: 319 SEVPILLIGSIAA---VIVFP-------------------------IFGL--------LL 342
E P+LL+GSIAA I++P +FG+ +
Sbjct: 642 PETPVLLLGSIAAGFHGIIYPDSRVWAFMFIGLGVLAFIALPLQNYLFGIAGGKLIQRIC 701
Query: 343 STSI----------------NIGAVGARLSTDASAVRSVVGDALGLIIQNIATIAAGLVI 386
S S + G+VGARLSTDAS VRS+VGD L L++QN+ T+AAGLVI
Sbjct: 702 SLSFEKVVHQEISWFDDPANSSGSVGARLSTDASTVRSLVGDTLALVVQNLVTVAAGLVI 761
Query: 387 AFTA-WKLAFITLAVPSLTIAEGYLKKK 413
+FTA W LA I LAV L +GYL+ +
Sbjct: 762 SFTANWILALIILAVLPLMGFQGYLQTR 789
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297736819|emb|CBI26020.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 294 bits (752), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 250/808 (30%), Positives = 345/808 (42%), Gaps = 304/808 (37%)
Query: 47 MPLGQTSLNVNAFAAGQAAACKMFETIERIPKINPYDNR--------------------- 85
M LGQ S ++AF +GQAAA KMFETIER P+I+ Y +
Sbjct: 275 MSLGQASPCLSAFGSGQAAAFKMFETIERKPEIDAYSSDGQKLDDIQGDVELRDVYFSYP 334
Query: 86 ----------FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQEKIGLVSKEP 135
F +PSGTT ALVG+SGSGKSTVI+L+E RFY P+A + I
Sbjct: 335 TRPDEQVFKGFSLSIPSGTTAALVGESGSGKSTVISLIE--RFYDPQAGEVLI------- 385
Query: 136 IFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV----------- 184
+A+ E IR A +LANA K IDKLP GLDT+V
Sbjct: 386 ------------------DATIEEIRAAAELANASKFIDKLPQGLDTLVGEHGTQLSGGQ 427
Query: 185 ---------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRNA 223
AT+A+DA+SER+VQ A+ +++ N+T +IVA+ L T+RNA
Sbjct: 428 KQRVAIARAILKDPRILLLDEATSALDAESERVVQEALDRVMINRTTIIVAHRLSTVRNA 487
Query: 224 DCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQEGAKEAQDKSLGVKHILRGFPGPIG 283
D I ++ +GKIVEKG H S+L++ +GA + I
Sbjct: 488 DMIAVIHRGKIVEKGAH-----------SELIKDPDGA----------------YSLLIR 520
Query: 284 VYETAERSEDRIEKDPTEIEKRKKVSVTRLAYANRSEVPILLIGSIAAVIVFPIFGLLLS 343
+ E + +++ EI KV + + + L+I ++ F ++
Sbjct: 521 LQEISSEQNASHDQEKPEISHPPKVPLAAVVNGADARFWALMIRAMC-------FEKVVY 573
Query: 344 TSINIGAVGARLSTDASAVRSVVGDALGLIIQNIATIAAGLVIAFTA-WKLAFITLAVPS 402
+N AL L++QN A + AGLVIAF A WK++FI L +
Sbjct: 574 MEVN---------------------ALSLLVQNSAAMIAGLVIAFVANWKMSFIILVLLP 612
Query: 403 LTIAEGYLK----------KKKNYERLH------------INAFC--------------- 425
L A GY++ KK YE + +FC
Sbjct: 613 LFGANGYVQVKFLKGFTADAKKKYEEASQVANDAVGSIRTVASFCAEEKVMQLYQQKCEG 672
Query: 426 ------------------------------FFIGSKLVEHGDATFGEVFK--FLSEFGCF 453
F+ G++LV+ G ATF EVF+ F+
Sbjct: 673 PMNAGIREGLVGGVGYGVSFFLLFAVYATAFYAGARLVDVGQATFAEVFQVFFVLTLAAV 732
Query: 454 WCLESTAVAPNADKAKGSAASIFEILESKPKIDWSSKDGMTPSTVRGDIVFEH------- 506
+S+++AP+ KAK +AASIF IL+ + KID S + G T V+G+I F H
Sbjct: 733 GVSQSSSLAPDTGKAKNAAASIFAILDRESKIDSSDESGTTLENVKGEIEFHHVSFRYPT 792
Query: 507 ------------------TVALVGENGNGKSTVISLAERFHNP------------EQVIY 536
TVALVGE+G+GKST ISL +RF++P +++
Sbjct: 793 RPDIQIFRDLCLAIHSGKTVALVGESGSGKSTAISLLQRFYDPDSGHITLDGVEIQKLQL 852
Query: 537 SWIIIKCTN-----------------FIASLPQGSDLNVGERGLQLSGGLKQRIARTRA- 578
W + N FI+ L QG D VGERG+QLSGG KQR+A RA
Sbjct: 853 KWFRQQMGNATEAEISAAAELANAHKFISGLQQGYDTTVGERGIQLSGGQKQRVAIARAI 912
Query: 579 ----------------------------------RNYCGCGSPPYHYKNADITSVVKNGV 604
R K AD+ +VVKNG
Sbjct: 913 VKDPKILLLDEATSALDAESERVVQDALDRVMVNRTTLVVAHRLSTIKGADLIAVVKNGA 972
Query: 605 IAEKGRHDALMKITDGTYASLTALHMSS 632
IAEKG+H+ L+ I DG YASL ALHMS+
Sbjct: 973 IAEKGKHETLINIKDGIYASLVALHMSA 1000
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224116786|ref|XP_002331877.1| multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa] gi|222875395|gb|EEF12526.1| multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 291 bits (746), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 181/411 (44%), Positives = 232/411 (56%), Gaps = 119/411 (28%)
Query: 47 MPLGQTSLNVNAFAAGQAAACKMFETIERIPKINPYDNR--------------------- 85
M LGQTS +NAFA+GQAAA KMFETIER PKI+PYD
Sbjct: 317 MSLGQTSPCLNAFASGQAAAYKMFETIERKPKIDPYDTSGMVVEDLDGEIELRDVYFRYP 376
Query: 86 ----------FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQ---------- 125
F VPSGTT ALVGQSGSGKSTVI+LVE RFY P++ +
Sbjct: 377 ARPEVQIFSGFSLQVPSGTTTALVGQSGSGKSTVISLVE--RFYDPDSGEVLIDGVDLKK 434
Query: 126 -------EKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPL 178
EKIGLVS+EPI E I YGK+NA+D+ IR A+QLANA K IDK+P
Sbjct: 435 LKLSWIREKIGLVSQEPILFATSIKEN--IAYGKENATDQEIRTAIQLANAAKFIDKMPE 492
Query: 179 GLDTVV--------------------------------ATNAVDAQSERIVQAAMVKLVT 206
GLDT+V AT+A+DA+SERIVQ A+VK++
Sbjct: 493 GLDTMVGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKIMC 552
Query: 207 NQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQEGAKEAQ- 265
N+T ++VA+ L TIRNAD I +V GKIVEKG+H+EL +DPEGAYSQL+RLQ GA +++
Sbjct: 553 NRTTLVVAHRLTTIRNADMIAVVHLGKIVEKGSHEELTKDPEGAYSQLIRLQGGAMDSEE 612
Query: 266 ----DKSLGVKHILR---------------------GFPGPIGVYETAERSEDRIEKDPT 300
D + KH ++ G PGP V+ +D E++
Sbjct: 613 SQDIDADMSQKHSVQGSISRGSSGSRRSFTLNTVGFGMPGPTSVH------DDEFEQNNE 666
Query: 301 EIEKRKKVSVTRLAYANRSEVPILLIGSIAAVI---VFPIFGLLLSTSINI 348
K K+VS+ RLAY N+ E+P+L +G++AAVI +FP+FGLLLS +IN+
Sbjct: 667 RNVKPKEVSIKRLAYLNKPELPVLFLGTVAAVIHGVIFPVFGLLLSKAINM 717
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297740622|emb|CBI30804.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 287 bits (735), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 218/535 (40%), Positives = 287/535 (53%), Gaps = 135/535 (25%)
Query: 9 VIAGGITATVVAKLSCRGQIAYAEAEMLLSTQLEPLEDMP-------------------- 48
V+ GG A +AK+S RGQ+AYAEA ++ + + +
Sbjct: 1267 VLNGGAMAIYMAKMSSRGQLAYAEAGNVVEQTVGAIRTVASFTGEKKAVEKYESKLEVDY 1326
Query: 49 -------------LGQTSLNVNAFAAGQAAACKMFETIERIPKINPYDNR--------FL 87
L TS +NAFAAGQAAA KM E IE Y R F
Sbjct: 1327 ASTVQQGLASGVGLATTSPCLNAFAAGQAAAYKMGE-IELKNVYFKYPARPDVQIFSGFS 1385
Query: 88 QHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQ-----------------EKIGL 130
VPSG T ALVGQSGSGKSTVI+L+E RFY P+A + EKIGL
Sbjct: 1386 LSVPSGKTAALVGQSGSGKSTVISLLE--RFYDPDAGEVLIDGVNLKKFRLGWIREKIGL 1443
Query: 131 VSKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV------ 184
VS+EPI E I YGK+ A+DE IR A++ ANA K IDKLPLG++T+V
Sbjct: 1444 VSQEPILFGARIKEN--ISYGKKEATDEEIREAIERANAAKFIDKLPLGIETMVGEHGTQ 1501
Query: 185 --------------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLI 218
AT+A+DA+SERIVQ A+ ++TN+T VIVA+ L
Sbjct: 1502 LSEGQKQRIAIARAILKNPRILLLDEATSALDAESERIVQDALQDIMTNRTTVIVAHRLT 1561
Query: 219 TIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQEGAKEAQDKSLGV-KHILRG 277
TIRNAD I +V +GK+VE+GTH ELI+DP+GAYSQLVRLQ+G EA+D++ + +
Sbjct: 1562 TIRNADIIAVVYRGKLVEQGTHTELIKDPDGAYSQLVRLQQGNNEAEDQATDTEEEAAKS 1621
Query: 278 FPGPIGVYETAERSEDRIEKDPTEIEKRKKVSVTRLAYANRSEVPI--------LLIGSI 329
G+ ++ + ++ +E E+RKKVS+TRLAY NRSE+P+ L++ +
Sbjct: 1622 LNIEYGMSRSSGSRKLSLQDLVSEEERRKKVSITRLAYLNRSEIPLRKDSRFWSLMLAGL 1681
Query: 330 AAVI---------VFPIFGLLLSTSI---------------------NIGAVGARLSTDA 359
AV +F + G L I + GAVGARLST+A
Sbjct: 1682 GAVTLIVASVQNYLFGVAGGKLIQRIRSLTFRKVVHQEISWFDDPENSSGAVGARLSTNA 1741
Query: 360 SAVRSVVGDALGLIIQNIATIAAGLVIAFTA-WKLAFITLAVPSLTIAEGYLKKK 413
+AVRS+VGDAL L+IQNI+T+ AGL I+FTA W LA + LAV L +GYL+ K
Sbjct: 1742 AAVRSLVGDALALVIQNISTVVAGLAISFTANWSLALVILAVLPLVGLQGYLQMK 1796
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147796332|emb|CAN77320.1| hypothetical protein VITISV_009891 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 278 bits (710), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 182/440 (41%), Positives = 243/440 (55%), Gaps = 104/440 (23%)
Query: 9 VIAGGITATVVAKLSCRGQIAYAEAEMLLSTQLEPLEDMPLGQTSLN------------- 55
V+ GG A +AK+S RGQ+AYAEA ++ + + LN
Sbjct: 1332 VLTGGAMAIYMAKMSSRGQLAYAEAGNVVEQTVGAIRTEKTKTDLLNSLWIYKVASFTGE 1391
Query: 56 ---VNAFAAGQAAACKMFETIERIPKINPYD----------------NRFLQH------- 89
V + GQAAA KMFETI R P ++PYD N + ++
Sbjct: 1392 KKAVEKYETGQAAAYKMFETINRKPPMDPYDTSGTVLADIRGEIELKNVYFKYPARPDVQ 1451
Query: 90 --------VPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQ---------------- 125
VPSG T ALVGQSGSGKSTVI+L+E RFY P+A +
Sbjct: 1452 IFSGFSLSVPSGKTAALVGQSGSGKSTVISLLE--RFYYPDAGEVLIDGINLKKFRLGWI 1509
Query: 126 -EKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV 184
EKIGLVS+EPI E I YGK+ A+DE IR A++ ANA K IDKLPLG++T+V
Sbjct: 1510 REKIGLVSQEPILFGARIKEN--ISYGKKEATDEEIREAIERANAAKFIDKLPLGIETMV 1567
Query: 185 --------------------------------ATNAVDAQSERIVQAAMVKLVTNQTVVI 212
AT+A+DA+SERIVQ A+ ++TN+T VI
Sbjct: 1568 GEHGTQLSEGQKQRIAIARAILKNPRIXLLDEATSALDAESERIVQDALQDIMTNRTTVI 1627
Query: 213 VANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQEGAKEAQDKSLGV- 271
VA+ L TIRNAD I +V +GK+VE+GTH ELI+DP+GAYSQLVRLQ+G EA+D++
Sbjct: 1628 VAHRLTTIRNADIIAVVYRGKLVEQGTHTELIKDPDGAYSQLVRLQQGNNEAEDQATDTE 1687
Query: 272 KHILRGFPGPIGVYETAERSEDRIEKDPTEIEKRKKVSVTRLAYANRSEVPILLIGSIAA 331
+ + G+ ++ + ++ +E E+RKK S+TRLAY NRSE+P+LL+ IAA
Sbjct: 1688 EEAAKSLNIEYGMSRSSXSRKLSLQDLVSEEERRKKXSITRLAYLNRSEIPVLLLXPIAA 1747
Query: 332 ---VIVFPIFGLLLSTSINI 348
+VFP FGL+LST+I I
Sbjct: 1748 GVHGVVFPAFGLILSTAIKI 1767
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|240255983|ref|NP_193539.6| P-glycoprotein 9 [Arabidopsis thaliana] gi|378405145|sp|Q9M0M2.2|AB9B_ARATH RecName: Full=ABC transporter B family member 9; Short=ABC transporter ABCB.9; Short=AtABCB9; AltName: Full=Multidrug resistance protein 9; AltName: Full=P-glycoprotein 9 gi|332658588|gb|AEE83988.1| P-glycoprotein 9 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 273 bits (699), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 212/541 (39%), Positives = 275/541 (50%), Gaps = 185/541 (34%)
Query: 47 MPLGQTSLNVNAFAAGQAAACKMFETIERIPKINPYDNR--------------------- 85
M LGQTS ++NAFAAG+AAA KMFETI+R PKI+ YD
Sbjct: 306 MSLGQTSPSLNAFAAGRAAAFKMFETIKRSPKIDAYDMSGSVLEDIRGDIELKDVYFRYP 365
Query: 86 ----------FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQ---------- 125
F VP+G TVALVGQSGSGKSTVI+L+E RFY PE+ Q
Sbjct: 366 ARPDVQIFAGFSLFVPNGKTVALVGQSGSGKSTVISLIE--RFYDPESGQVLIDNIDLKK 423
Query: 126 -------EKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPL 178
KIGLVS+EP+ E I YGK++A+D+ IR A++LANA K IDKLP
Sbjct: 424 LQLKWIRSKIGLVSQEPVLFATTIKEN--IAYGKEDATDQEIRTAIELANAAKFIDKLPQ 481
Query: 179 GLDTVV--------------------------------ATNAVDAQSERIVQAAMVKLVT 206
GLDT+V AT+A+DA+SERIVQ A+V L++
Sbjct: 482 GLDTMVGEHGTQMSGGQKQRLAIARAILKNPKILLLDEATSALDAESERIVQDALVNLMS 541
Query: 207 NQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQEGAKEAQ- 265
N+T V+VA+ L TIR AD I +V +GKIVEKGTHDE+I+DPEGAYSQLVRLQEG+KE
Sbjct: 542 NRTTVVVAHRLTTIRTADVIAVVHQGKIVEKGTHDEMIQDPEGAYSQLVRLQEGSKEEAT 601
Query: 266 -----DKSLGVKH--ILR--------------------------GFPGPIGVYETAERSE 292
+ SL V+ LR FPG + V +T
Sbjct: 602 ESERPETSLDVERSGSLRLSSAMRRSVSRNSSSSRHSFSLASNMFFPG-VNVNQT----- 655
Query: 293 DRIEKDPTEIEKRKKVSVTRLAYANRSEVPILLIGSIAAVI---VFPIFGLLLSTSINIG 349
D +E + + + KKVS+ RLA+ N+ E+P+L++GSIAA++ VFPIFGLLLS+SIN+
Sbjct: 656 DEMEDEENNV-RHKKVSLKRLAHLNKPEIPVLVLGSIAAMVHGTVFPIFGLLLSSSINMF 714
Query: 350 AVGARLSTDASAVRSVVGDALGLI------IQN--------------------------- 376
A++ S +++ ALGL +QN
Sbjct: 715 YEPAKILKKDSHFWALIYIALGLTNFVMIPVQNYFFGIAGGKLIKRIRSMCFDKVVHQEI 774
Query: 377 -----------------------IATIAAGLVIAFTA-WKLAFITLAVPSLTIAEGYLKK 412
IAT+ GL+IAFTA W LA I LA+ + +GY +
Sbjct: 775 SWFDDTANSRSLVGDALALIVQNIATVTTGLIIAFTANWILALIVLALSPFIVIQGYAQT 834
Query: 413 K 413
K
Sbjct: 835 K 835
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359483592|ref|XP_002271265.2| PREDICTED: ABC transporter B family member 9-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 271 bits (692), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 179/421 (42%), Positives = 221/421 (52%), Gaps = 123/421 (29%)
Query: 47 MPLGQTSLNVNAFAAGQAAACKMFETIERIPKINPYDNR--------------------- 85
M LGQ S ++AF AGQAAA KMFETI+R PKIN YD
Sbjct: 308 MALGQASPCLSAFGAGQAAAYKMFETIKRKPKINAYDTNGVVLEEIMGEIELKDVYFKYP 367
Query: 86 ----------FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQ---------- 125
F ++PSGTT ALVGQSGSGKSTVI+L+E RFY PEA +
Sbjct: 368 ARPEVQIFSGFSLNIPSGTTAALVGQSGSGKSTVISLLE--RFYDPEAGEVLIDGVNLKK 425
Query: 126 -------EKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPL 178
KIGLVS+EPI E I YGK+ A+DE IR A++LANA K IDK+P
Sbjct: 426 INLRWIRGKIGLVSQEPILFAATIKEN--ISYGKEKATDEEIRTAIKLANAAKFIDKMPT 483
Query: 179 GLDTVV--------------------------------ATNAVDAQSERIVQAAMVKLVT 206
GLDT+V AT+A+DA+SERIVQ A+ ++
Sbjct: 484 GLDTMVGEHGTQLSGGQKQRIAIARAILKNPRILLLDEATSALDAESERIVQDALQNIMV 543
Query: 207 NQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQEGAKEAQD 266
N+T VIVA+ L TIRNAD I +V +GKIVE+GTH ELI DP+GAYSQLVRLQEG + +D
Sbjct: 544 NRTTVIVAHRLTTIRNADNIAVVHQGKIVEQGTHMELIRDPDGAYSQLVRLQEGHNQVED 603
Query: 267 KSL--------------------------------GVKH---ILRGFPGPIGVYETA-ER 290
V H + G P P G+ E
Sbjct: 604 AQSRVSKSSARDNARRSSRSRSLSSQISIISRDSPSVHHSYSLSSGIPDPTGIIEMEFGG 663
Query: 291 SEDRIEKDPTEIEKRKKVSVTRLAYANRSEVPILLIGSIAA---VIVFPIFGLLLSTSIN 347
E + E KR+KVS+ RLAY N+ E P+LL+GSIAA I++P+FGLL+ST+I
Sbjct: 664 KESSTTQGEAENRKRRKVSLIRLAYLNKPETPVLLLGSIAAGFHGIIYPVFGLLISTAIK 723
Query: 348 I 348
I
Sbjct: 724 I 724
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15237456|ref|NP_199466.1| ABC transporter B family member 7 [Arabidopsis thaliana] gi|75333860|sp|Q9FHF1.1|AB7B_ARATH RecName: Full=ABC transporter B family member 7; Short=ABC transporter ABCB.7; Short=AtABCB7; AltName: Full=Multidrug resistance protein 7; AltName: Full=P-glycoprotein 7 gi|10177591|dbj|BAB10822.1| multidrug resistance p-glycoprotein [Arabidopsis thaliana] gi|332008013|gb|AED95396.1| ABC transporter B family member 7 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 267 bits (682), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 178/407 (43%), Positives = 227/407 (55%), Gaps = 109/407 (26%)
Query: 47 MPLGQTSLNVNAFAAGQAAACKMFETIERIPKINPYDNR--------------------- 85
M LGQT ++N+FAAG AAA KMFETI+R PKI+ YD
Sbjct: 308 MALGQTLPSLNSFAAGTAAAYKMFETIKRKPKIDAYDMSGEVLEEIKGDIELRDVYFRYP 367
Query: 86 ----------FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQ---------- 125
F VP+G TVALVGQSGSGKSTVI+L+E RFY PE+ +
Sbjct: 368 ARPDVQIFVGFSLTVPNGMTVALVGQSGSGKSTVISLIE--RFYDPESGEVLIDGIDLKK 425
Query: 126 -------EKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPL 178
KIGLVS+EPI E I YGK++ASD+ IR A++LANA IDKLP
Sbjct: 426 FQVKWIRSKIGLVSQEPILFATTIREN--IVYGKKDASDQEIRTALKLANASNFIDKLPQ 483
Query: 179 GLDTVV--------------------------------ATNAVDAQSERIVQAAMVKLVT 206
GL+T+V AT+A+DA+SERIVQ A+VKL+
Sbjct: 484 GLETMVGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKLML 543
Query: 207 NQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQEGAK--EA 264
++T V+VA+ L TIR AD I +V +GK++EKGTHDE+I+DPEG YSQLVRLQEG+K EA
Sbjct: 544 SRTTVVVAHRLTTIRTADMIAVVQQGKVIEKGTHDEMIKDPEGTYSQLVRLQEGSKKEEA 603
Query: 265 QDK-------SL-------------GVKHILRGFPGPIGVYETAERSEDRIEKDPTEIEK 304
DK SL G G PG I + +T E E+ ++K
Sbjct: 604 IDKEPEKCEMSLEIESSDSQNGIHSGTLTSPSGLPGVISLDQTEEFHENISSTKTQTVKK 663
Query: 305 RKKVSVTRLAYANRSEVPILLIGSIAAV---IVFPIFGLLLSTSINI 348
K+VS+ RLA+ N+ E+ +LL+GS+AAV IVFP+ GLLLS +I I
Sbjct: 664 GKEVSLRRLAHLNKPEISVLLLGSLAAVIHGIVFPVQGLLLSRTIRI 710
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 632 | ||||||
| TAIR|locus:2117656 | 1236 | ABCB9 "ATP-binding cassette B9 | 0.180 | 0.092 | 0.563 | 3.6e-89 | |
| TAIR|locus:2151496 | 1248 | ABCB7 "ATP-binding cassette B7 | 0.185 | 0.093 | 0.519 | 5e-80 | |
| TAIR|locus:2041434 | 1286 | ABCB4 "ATP-binding cassette B4 | 0.183 | 0.090 | 0.460 | 5e-80 | |
| TAIR|locus:2141365 | 1230 | ABCB5 "ATP-binding cassette B5 | 0.305 | 0.156 | 0.389 | 5.8e-74 | |
| TAIR|locus:2141350 | 1229 | ABCB3 "ATP-binding cassette B3 | 0.305 | 0.157 | 0.373 | 6.6e-74 | |
| TAIR|locus:2196145 | 1278 | ABCB11 "ATP-binding cassette B | 0.422 | 0.208 | 0.295 | 1.2e-51 | |
| TAIR|locus:2196135 | 1273 | ABCB12 "ATP-binding cassette B | 0.172 | 0.085 | 0.436 | 1.3e-59 | |
| ZFIN|ZDB-GENE-080204-52 | 1275 | abcb4 "ATP-binding cassette, s | 0.435 | 0.215 | 0.308 | 2.2e-45 | |
| FB|FBgn0010241 | 1313 | Mdr50 "Multi drug resistance 5 | 0.261 | 0.125 | 0.316 | 2.3e-44 | |
| UNIPROTKB|A8J6M4 | 1249 | CHLREDRAFT_138602 "MDR-like AB | 0.156 | 0.079 | 0.509 | 5.3e-44 |
| TAIR|locus:2117656 ABCB9 "ATP-binding cassette B9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 286 (105.7 bits), Expect = 3.6e-89, Sum P(8) = 3.6e-89
Identities = 67/119 (56%), Positives = 87/119 (73%)
Query: 150 YGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVVATNAVDAQSERIVQAAMVKLVTNQT 209
+G Q + + R A+ A A K+ L LD AT+A+DA+SERIVQ A+V L++N+T
Sbjct: 490 HGTQMSGGQKQRLAI--ARAILKNPKILL-LDE--ATSALDAESERIVQDALVNLMSNRT 544
Query: 210 VVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQEGAKEAQDKS 268
V+VA+ L TIR AD I +V +GKIVEKGTHDE+I+DPEGAYSQLVRLQEG+KE +S
Sbjct: 545 TVVVAHRLTTIRTADVIAVVHQGKIVEKGTHDEMIQDPEGAYSQLVRLQEGSKEEATES 603
|
|
| TAIR|locus:2151496 ABCB7 "ATP-binding cassette B7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 279 (103.3 bits), Expect = 5.0e-80, Sum P(8) = 5.0e-80
Identities = 67/129 (51%), Positives = 88/129 (68%)
Query: 148 IPYGKQNASDEHIRPAVQLANAEK-------SIDKLPLGLDTVVATNAVDAQSERIVQAA 200
+P G + EH QL+ +K +I K P L AT+A+DA+SERIVQ A
Sbjct: 481 LPQGLETMVGEH---GTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDA 537
Query: 201 MVKLVTNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQEG 260
+VKL+ ++T V+VA+ L TIR AD I +V +GK++EKGTHDE+I+DPEG YSQLVRLQEG
Sbjct: 538 LVKLMLSRTTVVVAHRLTTIRTADMIAVVQQGKVIEKGTHDEMIKDPEGTYSQLVRLQEG 597
Query: 261 AK--EAQDK 267
+K EA DK
Sbjct: 598 SKKEEAIDK 606
|
|
| TAIR|locus:2041434 ABCB4 "ATP-binding cassette B4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 251 (93.4 bits), Expect = 5.0e-80, Sum P(9) = 5.0e-80
Identities = 58/126 (46%), Positives = 83/126 (65%)
Query: 148 IPYGKQNASDEHIRPAVQLANAEK-------SIDKLPLGLDTVVATNAVDAQSERIVQAA 200
+P G EH QL+ +K +I K P L AT+A+DA+SER+VQ A
Sbjct: 508 LPQGLDTMVGEH---GTQLSGGQKQRIAVARAILKDPRILLLDEATSALDAESERVVQEA 564
Query: 201 MVKLVTNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQEG 260
+ +++ N+T V+VA+ L T+RNAD I ++ +GKIVEKG+H EL++DPEGAYSQL+RLQE
Sbjct: 565 LDRIMVNRTTVVVAHRLSTVRNADMIAVIHQGKIVEKGSHTELLKDPEGAYSQLIRLQEE 624
Query: 261 AKEAQD 266
K ++
Sbjct: 625 KKSDEN 630
|
|
| TAIR|locus:2141365 ABCB5 "ATP-binding cassette B5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 315 (115.9 bits), Expect = 5.8e-74, Sum P(8) = 5.8e-74
Identities = 85/218 (38%), Positives = 129/218 (59%)
Query: 148 IPYGKQNASDEHIRPAVQLANAEK-------SIDKLPLGLDTVVATNAVDAQSERIVQAA 200
+P G + EH QL+ +K +I K P L AT+A+DA+SER+VQ A
Sbjct: 477 LPLGLETLVGEH---GTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEA 533
Query: 201 MVKLVTNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQEG 260
+ +++ N+T VIVA+ L T+RNAD I ++ +GKIVE+G+H EL++D EGAYSQL+RLQE
Sbjct: 534 LDRIMVNRTTVIVAHRLSTVRNADIIAVIHRGKIVEEGSHSELLKDHEGAYSQLLRLQEI 593
Query: 261 AKEAQDKSLGVKHILRGFPGPIGVYETAERSEDRIE-------KDPTEI--EKRKKVSVT 311
KE++ + I G G T + +D +D T++ E +KVS T
Sbjct: 594 NKESKRLEISDGSISSG--SSRGNNSTRQ-DDDSFSVLGLLAGQDSTKMSQELSQKVSFT 650
Query: 312 RLAYANRSEVPILLIGSIAAVI---VFPIFGLLLSTSI 346
R+A N+ E+PIL++G++ + +FPIFG+L + I
Sbjct: 651 RIAALNKPEIPILILGTLVGAVNGTIFPIFGILFAKVI 688
|
|
| TAIR|locus:2141350 ABCB3 "ATP-binding cassette B3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 298 (110.0 bits), Expect = 6.6e-74, Sum P(8) = 6.6e-74
Identities = 83/222 (37%), Positives = 129/222 (58%)
Query: 148 IPYGKQNASDEHIRPAVQLANAEK-------SIDKLPLGLDTVVATNAVDAQSERIVQAA 200
+P G + EH QL+ +K +I K P L AT+A+DA+SER+VQ A
Sbjct: 472 LPRGLETLVGEH---GTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEA 528
Query: 201 MVKLVTNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQEG 260
+ +++ ++T VIVA+ L T+RNAD I ++ +GKIVE+G+H EL++D EGAY+QL+RLQ+
Sbjct: 529 LDRVMMSRTTVIVAHRLSTVRNADMIAVIHRGKIVEEGSHSELLKDHEGAYAQLIRLQKI 588
Query: 261 AKEAQ----DKSLGVKHILRGFPGPIGVYETAERSEDRIE-------KDPTEI--EKRKK 307
KE + L + I RG I T +D + ++ TEI E+ +
Sbjct: 589 KKEPKRLESSNELRDRSINRGSSRNI---RTRVHDDDSVSVLGLLGRQENTEISREQSRN 645
Query: 308 VSVTRLAYANRSEVPILLIGSIAAVI---VFPIFGLLLSTSI 346
VS+TR+A N+ E IL++G++ + +FPIFG+L + I
Sbjct: 646 VSITRIAALNKPETTILILGTLLGAVNGTIFPIFGILFAKVI 687
|
|
| TAIR|locus:2196145 ABCB11 "ATP-binding cassette B11" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 251 (93.4 bits), Expect = 1.2e-51, Sum P(6) = 1.2e-51
Identities = 88/298 (29%), Positives = 146/298 (48%)
Query: 148 IPYGKQNASDEHIRPAVQLANAEK-------SIDKLPLGLDTVVATNAVDAQSERIVQAA 200
+P G EH QL+ +K +I K P L AT+A+DA+SER+VQ A
Sbjct: 505 LPQGLDTMVGEH---GTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEA 561
Query: 201 MVKLVTNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQEG 260
+ +++ N+T VIVA+ L T+RNAD I ++ +GK+VEKG+H EL++D EGAYSQL+RLQE
Sbjct: 562 LDRVMVNRTTVIVAHRLSTVRNADMIAVIHRGKMVEKGSHSELLKDSEGAYSQLIRLQEI 621
Query: 261 AKEAQDKSLGV------KHILRGFPGPIGVYETAERSEDRIEKDPTEIE---KRKKVSVT 311
K+ + L ++ + G V ++ + T ++ ++
Sbjct: 622 NKDVKTSELSSGSSFRNSNLKKSMEGTSSVGNSSRHHSLNVLGLTTGLDLGSHSQRAGQD 681
Query: 312 RLAYANRSEVPILLIGSIAAVIVFPIFGLLLSTSINIGAVGARLSTDASAVRSVVGDALG 371
A++ +P + + IAA+ P +LL +G V A ++ A+ + G +
Sbjct: 682 ETGTASQEPLPKVSLTRIAALNK-PEIPVLL-----LGTVAAAIN---GAIFPLFGILIS 732
Query: 372 LIIQNIATIAAGLVIAFTAWKLAFITLAVPSLTIA--EGYLKKKKNYERLH-INAFCF 426
+I+ A L W + F+ L V SL ++ + YL + + I + CF
Sbjct: 733 RVIEAFFKPAHELKRDSRFWAIIFVALGVTSLIVSPTQMYLFAVAGGKLIRRIRSMCF 790
|
|
| TAIR|locus:2196135 ABCB12 "ATP-binding cassette B12" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 221 (82.9 bits), Expect = 1.3e-59, Sum P(7) = 1.3e-59
Identities = 52/119 (43%), Positives = 75/119 (63%)
Query: 148 IPYGKQNASDEHIRPAVQLANAEK-------SIDKLPLGLDTVVATNAVDAQSERIVQAA 200
+P G EH QL+ +K +I K P L AT+A+D +SER+VQ A
Sbjct: 492 LPQGLDTKVGEH---GTQLSGGQKQRIAIARAILKDPRVLLLDEATSALDTESERVVQEA 548
Query: 201 MVKLVTNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQE 259
+ +++ N+T V+VA+ L T+RNAD I ++ GK+VEKG+H EL++D GAYSQL+R QE
Sbjct: 549 LDRVMVNRTTVVVAHRLSTVRNADMIAVIHSGKMVEKGSHSELLKDSVGAYSQLIRCQE 607
|
|
| ZFIN|ZDB-GENE-080204-52 abcb4 "ATP-binding cassette, sub-family B (MDR/TAP), member 4" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 219 (82.2 bits), Expect = 2.2e-45, Sum P(8) = 2.2e-45
Identities = 93/301 (30%), Positives = 144/301 (47%)
Query: 68 KMFETIERIPKINPYDNRFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQEK 127
+ ++ E I+ +D R L + +V Q +T I E+ R+ + Q++
Sbjct: 447 RFYDPQEGSVSIDGHDIRSLNVRGLRELIGVVSQEPVLFATTI--AENIRYGRQDVTQDE 504
Query: 128 IGLVSKEP-----IFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDT 182
I ++E I D E G Q + + R A+ A A K+ L LD
Sbjct: 505 IEQAAREANAYNFIMKLPDKFETLVGDRGTQMSGGQKQRIAI--ARALVRNPKILL-LDE 561
Query: 183 VVATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDE 242
AT+A+DA+SE IVQAA+ K+ +T ++VA+ L TIRNAD I G+IVE GTHDE
Sbjct: 562 --ATSALDAESETIVQAALDKVRLGRTTIVVAHRLSTIRNADVIAGFQNGEIVELGTHDE 619
Query: 243 LIEDPEGAYSQLVRLQ-----EGAKE-AQDKSLGVKHILRGFPGPIGVYETAERS----E 292
L+E +G Y LV +Q E A+E +++ ++ K ++ RS E
Sbjct: 620 LMER-KGIYHSLVNMQTFKSTEVAEEDSEEMTMDEKSPSVSSMNEPTLFRQKSRSGSEKE 678
Query: 293 DRIEKDPTEIEKRKKVSVTRLAYANRSEVPILLIGSIAAVI---VFPIFGLLLSTSINIG 349
+ E+ PTE EK VS + N E P +++G + A I + P F ++ S I +
Sbjct: 679 LKEEEKPTEEEKVPNVSFLTVLKLNYPEWPYMVVGILCATINGGMQPAFAVIFSKIIAVF 738
Query: 350 A 350
A
Sbjct: 739 A 739
|
|
| FB|FBgn0010241 Mdr50 "Multi drug resistance 50" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 178 (67.7 bits), Expect = 2.3e-44, Sum P(8) = 2.3e-44
Identities = 58/183 (31%), Positives = 94/183 (51%)
Query: 185 ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELI 244
AT+A+D SE VQAA+ K+ +T +IVA+ L T+R AD I++++KG++VE GTH EL+
Sbjct: 596 ATSALDTASEAKVQAALEKVSAGRTTIIVAHRLSTVRRADRIVVINKGEVVESGTHQELM 655
Query: 245 EDPEGAYSQLVRLQEGAKEAQDKSLGVKHILRGFP------GPIGVYETAERSEDRIEKD 298
E + Y LV Q G + S I + F I V E + + +
Sbjct: 656 ELKDH-YFNLVTTQLGEDDGSVLS-PTGDIYKNFDIKDEDEEEIKVLSEDEDEDVMVTDE 713
Query: 299 PTEIEKRKKVS-------VTRLAYANRSEVPILLIGSIAAVIV---FPIFGLLLSTSINI 348
+ +K+KKV + + N+ E + +G I++VI+ PIF +L + + I
Sbjct: 714 KNKKKKKKKVKDPNEVKPMLEVMKMNKPEWLQIAVGCISSVIMGCAMPIFAVLFGSILQI 773
Query: 349 GAV 351
+V
Sbjct: 774 LSV 776
|
|
| UNIPROTKB|A8J6M4 CHLREDRAFT_138602 "MDR-like ABC transporter" [Chlamydomonas reinhardtii (taxid:3055)] | Back alignment and assigned GO terms |
|---|
Score = 230 (86.0 bits), Expect = 5.3e-44, Sum P(7) = 5.3e-44
Identities = 52/102 (50%), Positives = 73/102 (71%)
Query: 164 VQLANAEKSIDKLPLGLDTVVATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRNA 223
+ +A A K+ L LD AT+A+D +SE +VQAA+ +LV +T V+VA+ L TI+NA
Sbjct: 484 IAIARAILKSPKVML-LDE--ATSALDTRSEALVQAALDRLVVGRTTVVVAHRLSTIKNA 540
Query: 224 DCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQEGAKEAQ 265
D I +V G+IVE+GTH+EL+ DP+GAYS LV+LQ AK+ Q
Sbjct: 541 DSIAVVQGGRIVEQGTHEELLRDPDGAYSVLVKLQMEAKQLQ 582
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | fgenesh2_kg.7__2498__AT4G18050.1 | annotation not avaliable (1239 aa) | |||||||||
(Arabidopsis lyrata) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 632 | |||
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 3e-50 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 2e-43 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 4e-34 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 8e-34 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 1e-33 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 3e-33 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-29 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 3e-29 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 3e-28 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 4e-27 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 1e-26 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 4e-26 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 7e-24 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 3e-22 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 6e-22 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 7e-19 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 3e-18 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 6e-18 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 1e-16 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 4e-16 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 4e-16 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 3e-15 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 8e-14 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 8e-14 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 1e-13 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 4e-13 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 6e-13 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 2e-12 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 3e-12 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 9e-12 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 4e-11 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 2e-10 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 8e-10 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 2e-08 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 2e-08 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 3e-08 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 3e-08 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 5e-08 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 7e-08 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 1e-07 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 2e-07 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 2e-07 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 3e-07 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 9e-07 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 1e-06 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 4e-06 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 5e-06 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 6e-06 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 6e-06 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 6e-06 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 7e-06 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 8e-06 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 1e-05 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 1e-05 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 1e-05 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 3e-05 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 3e-05 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 4e-05 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 5e-05 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 7e-05 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 2e-04 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 4e-04 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 5e-04 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 5e-04 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 6e-04 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 6e-04 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 7e-04 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 7e-04 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 7e-04 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 8e-04 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 8e-04 | |
| COG5192 | 1077 | COG5192, BMS1, GTP-binding protein required for 40 | 0.001 | |
| cd01854 | 211 | cd01854, YjeQ_EngC, Ribosomal interacting GTPase Y | 0.001 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 0.001 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 0.001 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 0.002 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 0.002 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 0.002 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 0.002 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 0.002 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 0.003 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 0.003 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 0.003 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 0.004 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 0.004 | |
| pfam03193 | 161 | pfam03193, DUF258, Protein of unknown function, DU | 0.004 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 0.004 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 0.004 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 0.004 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 0.004 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 173 bits (442), Expect = 3e-50
Identities = 80/218 (36%), Positives = 117/218 (53%), Gaps = 54/218 (24%)
Query: 90 VPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQ-----------------EKIGLVS 132
+P G TVALVG SG GKSTV++L+E RFY P + + +IGLVS
Sbjct: 26 IPPGKTVALVGSSGCGKSTVVSLLE--RFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVS 83
Query: 133 KEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV-------- 184
+EP+ E I YGK +A+DE + A + AN I LP G DT+V
Sbjct: 84 QEPVLFDGTIAEN--IRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLS 141
Query: 185 ------------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITI 220
AT+A+DA+SE++VQ A+ + + +T +++A+ L TI
Sbjct: 142 GGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTI 201
Query: 221 RNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQ 258
RNAD I ++ G++VE+GTHDEL+ +G Y++LV+ Q
Sbjct: 202 RNADLIAVLQNGQVVEQGTHDELMA-QKGVYAKLVKAQ 238
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 155 bits (393), Expect = 2e-43
Identities = 80/215 (37%), Positives = 119/215 (55%), Gaps = 54/215 (25%)
Query: 89 HVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQ-----------------EKIGLV 131
+P+G TVALVG SGSGKST++NL+ RFY ++ + +IGLV
Sbjct: 24 DIPAGETVALVGPSGSGKSTLVNLIP--RFYDVDSGRILIDGHDVRDYTLASLRRQIGLV 81
Query: 132 SKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV------- 184
S++ +FLF D + I YG+ A+ E + A + ANA + I +LP G DTV+
Sbjct: 82 SQD-VFLFND-TVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKL 139
Query: 185 -------------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLIT 219
AT+A+D +SER+VQAA+ +L+ N+T ++A+ L T
Sbjct: 140 SGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLST 199
Query: 220 IRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQL 254
I NAD I+++ GKIVE+GTH+EL+ G Y++L
Sbjct: 200 IENADRIVVLEDGKIVERGTHEELLAQ-GGVYAKL 233
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 4e-34
Identities = 70/221 (31%), Positives = 110/221 (49%), Gaps = 60/221 (27%)
Query: 90 VPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQ-----------------EKIGLVS 132
+P+G VA+VG SGSGKST++ L+ FRFY + IG+V
Sbjct: 24 IPAGKKVAIVGPSGSGKSTILRLL--FRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVP 81
Query: 133 KEPIFLFCD---FNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV----- 184
++ + LF D +N I YG+ +A+DE + A + A I + P G DT+V
Sbjct: 82 QDTV-LFNDTIGYN----IRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGL 136
Query: 185 ---------------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCL 217
AT+A+D +ER +QAA+ + +T +++A+ L
Sbjct: 137 KLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRL 196
Query: 218 ITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQ 258
TI NAD II++ G+IVE+GTH+EL+ G Y+++ + Q
Sbjct: 197 STIVNADKIIVLKDGRIVERGTHEELLA-KGGLYAEMWKAQ 236
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 8e-34
Identities = 70/207 (33%), Positives = 106/207 (51%), Gaps = 55/207 (26%)
Query: 89 HVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQ-----------------EKIGLV 131
+ G TVA+VG +G+GK+T+INL+ RFY P+ Q IG+V
Sbjct: 25 SIKPGETVAIVGPTGAGKTTLINLL--MRFYDPQKGQILIDGIDIRDISRKSLRSMIGVV 82
Query: 132 SKEPIFLFCD-FNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV------ 184
++ FLF E I G+ NA+DE + A + A A I KLP G DTV+
Sbjct: 83 LQDT-FLFSGTIMEN--IRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGN 139
Query: 185 --------------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLI 218
AT+ +D ++E+++Q A+ KL+ +T +I+A+ L
Sbjct: 140 LSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLS 199
Query: 219 TIRNADCIIMVSKGKIVEKGTHDELIE 245
TI+NAD I+++ GKI+E+GTHDEL+
Sbjct: 200 TIKNADKILVLDDGKIIEEGTHDELLA 226
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 135 bits (342), Expect = 1e-33
Identities = 79/222 (35%), Positives = 118/222 (53%), Gaps = 59/222 (26%)
Query: 89 HVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQ-----------------EKIGLV 131
+ G TVALVG+SGSGKST++NL+ RFY P++ Q ++ LV
Sbjct: 354 VIEPGETVALVGRSGSGKSTLVNLIP--RFYEPDSGQILLDGHDLADYTLASLRRQVALV 411
Query: 132 SKEPIFLFCD--FNEGQYIPYGK-QNASDEHIRPAVQLANAEKSIDKLPLGLDTVV---- 184
S++ + LF D N I YG+ + A I A+ A A+ +DKLPLGLDT +
Sbjct: 412 SQD-VVLFNDTIANN---IAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENG 467
Query: 185 ----------------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANC 216
AT+A+D +SER+VQAA+ +L+ +T +++A+
Sbjct: 468 VLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHR 527
Query: 217 LITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQ 258
L TI AD I+++ G+IVE+GTH+EL+ G Y+QL +Q
Sbjct: 528 LSTIEKADRIVVMDDGRIVERGTHNELL-ARNGLYAQLHNMQ 568
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 134 bits (339), Expect = 3e-33
Identities = 77/220 (35%), Positives = 113/220 (51%), Gaps = 51/220 (23%)
Query: 89 HVPSGTTVALVGQSGSGKSTVINLVESF---------------RFYAPEAEQEKIGLVSK 133
+P+G TVALVG+SGSGKST+ NL+ F R Y + + ++ LVS+
Sbjct: 365 KIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQ 424
Query: 134 EPIFLFCDFNEGQYIPYGKQNA-SDEHIRPAVQLANAEKSIDKLPLGLDTVV-------- 184
+ LF D I Y + S E I A ++A A I+K+ GLDTV+
Sbjct: 425 N-VHLFND-TIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLS 482
Query: 185 ------------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITI 220
AT+A+D +SER +QAA+ +L N+T +++A+ L TI
Sbjct: 483 GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTI 542
Query: 221 RNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQEG 260
AD I++V G+IVE+GTH EL+ G Y+QL ++Q G
Sbjct: 543 EKADEILVVEDGEIVERGTHAELLAQ-NGVYAQLHKMQFG 581
|
Length = 582 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 1e-29
Identities = 94/330 (28%), Positives = 151/330 (45%), Gaps = 88/330 (26%)
Query: 7 AIVIAGGITATVVAKLSCRGQIAYAEAEMLLSTQLEPLEDMPLGQTSLNVNAFAAGQAAA 66
+V+A G + L+ G +A A +L +L P+ Q V+ AAA
Sbjct: 251 VLVLALGGFLVLSGSLT-VGALA---AFILYLLRLL----TPILQLGEVVSLLQRASAAA 302
Query: 67 CKMFETIERIPKINPYDNRFLQ--------------------------HVPSGTTVALVG 100
++FE ++ P++ + + G VA+VG
Sbjct: 303 ERLFELLDEEPEVEDPPDPLKDTIGSIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVG 362
Query: 101 QSGSGKSTVINLVESFRFYAPEAEQ-----------------EKIGLVSKEPIFLFCDFN 143
SGSGKST+I L+ R Y P + + ++IG+VS++P+
Sbjct: 363 PSGSGKSTLIKLL--LRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIR 420
Query: 144 EGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV------------------- 184
E I G+ +A+DE I A++LANA + I LP G DT+V
Sbjct: 421 EN--IALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIAR 478
Query: 185 -------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRNADCIIMVSK 231
AT+A+D ++E ++Q A+ KL+ +T +I+A+ L TI+NAD II++
Sbjct: 479 ALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDN 538
Query: 232 GKIVEKGTHDELIEDPEGAYSQLVRLQEGA 261
G+IVE+GTH+EL+ G Y++L + Q GA
Sbjct: 539 GRIVERGTHEELLAK-GGLYARLYQAQGGA 567
|
Length = 567 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 3e-29
Identities = 70/220 (31%), Positives = 111/220 (50%), Gaps = 54/220 (24%)
Query: 89 HVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQ-----------------EKIGLV 131
+P G VA+VG+SGSGKST++ L+ Y P+ + ++G V
Sbjct: 495 EIPPGEKVAIVGRSGSGKSTLLKLLL--GLYKPQQGRILLDGVDLNDIDLASLRRQVGYV 552
Query: 132 SKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV------- 184
++P E I G A+DE I A QLA A + I+ LP+G DT V
Sbjct: 553 LQDPFLFSGSIREN--IALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANL 610
Query: 185 -------------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLIT 219
AT+A+D ++E I+ +++++ +TV+I+A+ L T
Sbjct: 611 SGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLST 670
Query: 220 IRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQE 259
IR+AD II++ +GKIVE+G+H+EL+ G Y++L + QE
Sbjct: 671 IRSADRIIVLDQGKIVEQGSHEELLAQ-GGLYARLYQQQE 709
|
Length = 709 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 119 bits (299), Expect = 3e-28
Identities = 72/219 (32%), Positives = 111/219 (50%), Gaps = 54/219 (24%)
Query: 89 HVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQ-----------------EKIGLV 131
V G TVALVG SG+GKST+ L+ RFY P++ + ++ LV
Sbjct: 362 TVRPGETVALVGPSGAGKSTLFQLL--LRFYDPQSGRILLDGVDLRQLDPAELRARMALV 419
Query: 132 SKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV------- 184
++P+ E I YG+ +A+DE + A + A+A + I LP G DT +
Sbjct: 420 PQDPVLFAASVMEN--IRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTL 477
Query: 185 -------------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLIT 219
AT+A+DA+SE++VQ A+ L+ +T +I+A+ L T
Sbjct: 478 SGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLAT 537
Query: 220 IRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQ 258
+ AD I+++ +G+IV +GTH ELI G Y++L RLQ
Sbjct: 538 VLKADRIVVMDQGRIVAQGTHAELIAK-GGLYARLARLQ 575
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 4e-27
Identities = 67/218 (30%), Positives = 103/218 (47%), Gaps = 54/218 (24%)
Query: 90 VPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQ-----------------EKIGLVS 132
+ G V +VG+SGSGKST+ L++ RFY PE + ++G+V
Sbjct: 25 IKPGEVVGIVGRSGSGKSTLTKLIQ--RFYVPENGRVLVDGHDLALADPAWLRRQVGVVL 82
Query: 133 KEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV-------- 184
+E + + I S E + A +LA A I +LP G DT+V
Sbjct: 83 QENVLFNRSIRDN--IALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLS 140
Query: 185 ------------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITI 220
AT+A+D +SE + M + +TV+I+A+ L T+
Sbjct: 141 GGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTV 200
Query: 221 RNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQ 258
+NAD II++ KG+IVE+G+HDEL+ G Y+ L +LQ
Sbjct: 201 KNADRIIVMEKGRIVEQGSHDELL-AENGLYAYLYQLQ 237
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 1e-26
Identities = 79/269 (29%), Positives = 115/269 (42%), Gaps = 85/269 (31%)
Query: 65 AACKMFETIERIPKINP---------------------YDNR----FLQH----VPSGTT 95
A+ K+FE ++R P I Y NR L+ + G
Sbjct: 450 ASEKVFEYLDRKPNIPLTGTLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEV 509
Query: 96 VALVGQSGSGKSTVINLVESFRFYAPEAEQ-----------------EKIGLVSKEPIFL 138
VALVG SGSGKSTV L++ Y P Q ++ LV +EP+
Sbjct: 510 VALVGPSGSGKSTVAALLQ--NLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLF 567
Query: 139 FCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV-------------- 184
E I YG + DE I A + ANA I + P G DT V
Sbjct: 568 SGSVREN--IAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQR 625
Query: 185 ------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRNADCI 226
AT+A+DA+ E+++Q + + ++TV+++A+ L T+ AD I
Sbjct: 626 IAIARALVRKPRVLILDEATSALDAECEQLLQESRSR--ASRTVLLIAHRLSTVERADQI 683
Query: 227 IMVSKGKIVEKGTHDELIEDPEGAYSQLV 255
+++ KG +VE GTH +L+ED G Y LV
Sbjct: 684 LVLKKGSVVEMGTHKQLMEDQ-GCYKHLV 711
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 4e-26
Identities = 62/220 (28%), Positives = 99/220 (45%), Gaps = 54/220 (24%)
Query: 90 VPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQ-----------------EKIGLVS 132
+ G + +VG SGSGKST+ L++ R Y P+ Q ++G+V
Sbjct: 480 IKPGEFIGIVGPSGSGKSTLTKLLQ--RLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVL 537
Query: 133 KEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV-------- 184
+E + + I A EH+ A +LA A I +LP G +T V
Sbjct: 538 QENVLFSRSIRDN--IALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLS 595
Query: 185 ------------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITI 220
AT+A+D +SE ++ M ++ +TV+I+A+ L T+
Sbjct: 596 GGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTV 655
Query: 221 RNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQEG 260
R D II++ KG+I E G H+EL+ G Y++L + Q G
Sbjct: 656 RACDRIIVLEKGQIAESGRHEELLALQ-GLYARLWQQQSG 694
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 7e-24
Identities = 66/221 (29%), Positives = 107/221 (48%), Gaps = 58/221 (26%)
Query: 89 HVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQEKI-----------------GLV 131
G TVA+VG +G+GKST+INL++ R + P++ + I +V
Sbjct: 357 EAKPGQTVAIVGPTGAGKSTLINLLQ--RVFDPQSGRILIDGTDIRTVTRASLRRNIAVV 414
Query: 132 SKEPIFLFCDFNE--GQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV----- 184
++ FN I G+ +A+DE +R A + A A I++ P G DTVV
Sbjct: 415 FQDAGL----FNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGR 470
Query: 185 ---------------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCL 217
AT+A+D ++E V+AA+ +L+ +T I+A+ L
Sbjct: 471 QLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRL 530
Query: 218 ITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQ 258
T+RNAD I++ G++VE G+ DEL+ G ++ L+R Q
Sbjct: 531 STVRNADRILVFDNGRVVESGSFDELV-ARGGRFAALLRAQ 570
|
Length = 588 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 3e-22
Identities = 64/217 (29%), Positives = 104/217 (47%), Gaps = 56/217 (25%)
Query: 88 QHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQ-----------------EKIGL 130
+P G TVA+VG+SG+GKST++ L+ FRFY + IG+
Sbjct: 284 FTIPLGKTVAIVGESGAGKSTILRLL--FRFYDVNSGSITIDGQDIRDVTQQSLRRAIGI 341
Query: 131 VSKE-PIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV----- 184
V ++ +F I YG+ +A+ E + A + A I LP G DT V
Sbjct: 342 VPQDTVLFNDTIAYN---IKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGL 398
Query: 185 ---------------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCL 217
AT+A+D +E+ +QAA+ ++ +T +++A+ L
Sbjct: 399 KLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRL 458
Query: 218 ITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQL 254
TI +AD II++ G+IVE+GTH+EL+ G Y+++
Sbjct: 459 STIIDADEIIVLDNGRIVERGTHEELL-AAGGLYAEM 494
|
Length = 497 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 99.6 bits (249), Expect = 6e-22
Identities = 66/219 (30%), Positives = 107/219 (48%), Gaps = 51/219 (23%)
Query: 89 HVPSGTTVALVGQSGSGKSTVINLVESF---------------RFYAPEAEQEKIGLVSK 133
+ +G ALVG SG+GKST++NL+ F R +PEA +++I VS+
Sbjct: 343 TIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQ 402
Query: 134 EPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV--------- 184
P E I + +ASDE I A+ A + + K P GLDTV+
Sbjct: 403 NPYLFAGTIREN--ILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSG 459
Query: 185 -----------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIR 221
T +DA++E+I+ A+ +L +TV+++ + L
Sbjct: 460 GQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAA 519
Query: 222 NADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQEG 260
+AD I+++ G++VE+GTH+EL E +G Y+ L++ QEG
Sbjct: 520 DADRIVVLDNGRLVEQGTHEELSEK-QGLYANLLKQQEG 557
|
Length = 559 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 85.6 bits (212), Expect = 7e-19
Identities = 60/191 (31%), Positives = 87/191 (45%), Gaps = 53/191 (27%)
Query: 93 GTTVALVGQSGSGKSTVINLVESFRFYAPEAEQ-----------------EKIGLVSKEP 135
G ALVG SGSGKSTV+ L+E FY P+ Q K+ LV +EP
Sbjct: 40 GEVTALVGPSGSGKSTVVALLE--NFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEP 97
Query: 136 IFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV----------- 184
+ + I YG Q+ S E ++ A Q A+A I +L G DT V
Sbjct: 98 VLFARSLQDN--IAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQ 155
Query: 185 ---------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRNA 223
AT+A+DA+SE+ VQ A+ +TV+++A+ L T+ A
Sbjct: 156 KQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERA 215
Query: 224 DCIIMVSKGKI 234
D I+++ G+I
Sbjct: 216 DQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 88.0 bits (218), Expect = 3e-18
Identities = 66/214 (30%), Positives = 108/214 (50%), Gaps = 50/214 (23%)
Query: 90 VPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQ-----EKIGLVSKEPI-----FLF 139
+G TVA+VG +G+GK+T+INL++ R Y P Q I V++E + +F
Sbjct: 358 AKAGQTVAIVGPTGAGKTTLINLLQ--RVYDPTVGQILIDGIDINTVTRESLRKSIATVF 415
Query: 140 CD---FNE--GQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV---------- 184
D FN + I G++ A+DE + A + A A I K G DT+V
Sbjct: 416 QDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGG 475
Query: 185 ----------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRN 222
AT+A+D ++E V+ A+ L N+T I+A+ L T+RN
Sbjct: 476 ERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRN 535
Query: 223 ADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVR 256
AD ++ + +G+++EKG+ ELI+ +G + +L+R
Sbjct: 536 ADLVLFLDQGRLIEKGSFQELIQK-DGRFYKLLR 568
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 87.2 bits (217), Expect = 6e-18
Identities = 53/222 (23%), Positives = 96/222 (43%), Gaps = 55/222 (24%)
Query: 89 HVPSGTTVALVGQSGSGKSTVINLVESFRFY--------------APEAEQEKIGLVSKE 134
+P+G +ALVG SG+GK++++N + F Y PE+ ++ + V +
Sbjct: 372 TLPAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELDPESWRKHLSWVGQN 431
Query: 135 PIFLFCDFNEG---QYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVVATNA--- 188
P L G + G +ASDE ++ A++ A + + LP GLDT + A
Sbjct: 432 PQ-LP----HGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGL 486
Query: 189 -----------------------------VDAQSERIVQAAMVKLVTNQTVVIVANCLIT 219
+DA SE++V A+ QT ++V + L
Sbjct: 487 SVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLED 546
Query: 220 IRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQEGA 261
+ D I ++ G+IV++G + EL + G ++ L+ ++
Sbjct: 547 LAQWDQIWVMQDGQIVQQGDYAELSQAG-GLFATLLAHRQEE 587
|
Length = 588 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 83.5 bits (207), Expect = 1e-16
Identities = 61/222 (27%), Positives = 93/222 (41%), Gaps = 66/222 (29%)
Query: 89 HVPSGTTVALVGQSGSGKSTVINLV---------------ESFRFYAPEAEQEKIGLVSK 133
+ G VALVG SGSGKST+ LV E + +V +
Sbjct: 501 TLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQ 560
Query: 134 EPIFLFCDFNEGQYIPYGKQNAS-------DEHIRPAVQLANAEKSIDKLPLGLDTVV-- 184
+ IFLF EG + N + D + A + A I P G D +
Sbjct: 561 D-IFLF----EGTV----RDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAE 611
Query: 185 ------------------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVA 214
AT+A+D ++E+I+ + + T +IVA
Sbjct: 612 GGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVA 669
Query: 215 NCLITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVR 256
+ L TIR+ D II++ +GK+V++GTH+EL GAY++L+R
Sbjct: 670 HRLSTIRDCDEIIVLERGKVVQRGTHEELWAV-GGAYARLIR 710
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 4e-16
Identities = 46/123 (37%), Positives = 54/123 (43%), Gaps = 51/123 (41%)
Query: 507 TVALVGENGNGKSTVISLAERFHNP-----------------------------EQVIYS 537
TVALVG +G GKSTV+SL ERF++P E V++
Sbjct: 31 TVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFD 90
Query: 538 WII---IK-------------------CTNFIASLPQGSDLNVGERGLQLSGGLKQRIAR 575
I I+ +FI SLP G D VGERG QLSGG KQRIA
Sbjct: 91 GTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAI 150
Query: 576 TRA 578
RA
Sbjct: 151 ARA 153
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 76.3 bits (189), Expect = 4e-16
Identities = 52/171 (30%), Positives = 82/171 (47%), Gaps = 49/171 (28%)
Query: 89 HVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQ-----------------EKIGLV 131
+ G VA+VG SGSGKST++ L+ R Y P + + + I V
Sbjct: 24 TIKPGEKVAIVGPSGSGKSTLLKLL--LRLYDPTSGEILIDGVDLRDLDLESLRKNIAYV 81
Query: 132 SKEPIFLFCD---FN---EGQYIPYGKQNASDEHIRPAVQLANA---EKSIDKLPLGLDT 182
++P FLF N GQ +Q R + +A A + I L LD
Sbjct: 82 PQDP-FLFSGTIRENILSGGQ-----RQ-------R--IAIARALLRDPPI----LILDE 122
Query: 183 VVATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRNADCIIMVSKGK 233
AT+A+D ++E ++ A+ L +TV+++A+ L TIR+AD II++ G+
Sbjct: 123 --ATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 79.0 bits (195), Expect = 3e-15
Identities = 50/189 (26%), Positives = 68/189 (35%), Gaps = 80/189 (42%)
Query: 467 KAKGSAASIFEILESKPKIDWSSKDGM-TPSTVRGDIVFEH------------------- 506
+A G++ +FE L+ KP I G P + G I F+
Sbjct: 446 QAVGASEKVFEYLDRKPNI---PLTGTLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTF 502
Query: 507 ------TVALVGENGNGKSTVISLAERFHNP----------------------------- 531
VALVG +G+GKSTV +L + + P
Sbjct: 503 TLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQ 562
Query: 532 EQVIYSWIIIK----------------------CTNFIASLPQGSDLNVGERGLQLSGGL 569
E V++S + + +FI P G D VGE+G QLSGG
Sbjct: 563 EPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQ 622
Query: 570 KQRIARTRA 578
KQRIA RA
Sbjct: 623 KQRIAIARA 631
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 8e-14
Identities = 69/242 (28%), Positives = 109/242 (45%), Gaps = 75/242 (30%)
Query: 83 DNRFLQH----VPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQE------------ 126
DN LQ+ VPS VALVG +GSGKST+ +L+ Y P E E
Sbjct: 353 DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMG---YYPLTEGEIRLDGRPLSSLS 409
Query: 127 ------KIGLVSKEPIFL----FCDFNEGQYIPYGKQNASDEHIRPA---VQLANAEKSI 173
+ +V ++P+ L + G+ I S+E + A VQLA +S
Sbjct: 410 HSVLRQGVAMVQQDPVVLADTFLANVTLGRDI-------SEEQVWQALETVQLAELARS- 461
Query: 174 DKLPLGLDTVV--------------------------------ATNAVDAQSERIVQAAM 201
LP GL T + AT +D+ +E+ +Q A+
Sbjct: 462 --LPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQAL 519
Query: 202 VKLVTNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQEGA 261
+ + T+V++A+ L TI AD I+++ +G+ VE+GTH +L+ +G Y Q+ +LQ
Sbjct: 520 AAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAA-QGRYWQMYQLQLAG 578
Query: 262 KE 263
+E
Sbjct: 579 EE 580
|
Length = 592 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 8e-14
Identities = 70/281 (24%), Positives = 106/281 (37%), Gaps = 84/281 (29%)
Query: 26 GQIAYAEAEMLLSTQLEPLEDMPLGQTSLNVNAFAAGQAAACKMFETIERIPKINP---- 81
G + A L L P +PL Q +A A G AAA +F ++ P+
Sbjct: 256 GDLDLATG--LFVLLLAPEFYLPLRQLGAQYHARADGVAAAEALFAVLDAAPRPLAGKAP 313
Query: 82 -----------------YDNR------FLQHVPSGTTVALVGQSGSGKSTVINLVESFRF 118
Y R VP G VALVG SG+GKST++NL+ F
Sbjct: 314 VTAAPAPSLEFSGVSVAYPGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVD 373
Query: 119 YA---------------PEAEQEKIGLVSKEPIFLFCD---FNEGQYIPYGKQNASDEHI 160
++ +++I V + P FLF N I + +ASD I
Sbjct: 374 PTEGSIAVNGVPLADADADSWRDQIAWVPQHP-FLFAGTIAEN----IRLARPDASDAEI 428
Query: 161 RPAVQLANAEKSIDKLPLGLDTVVA--------------------------------TNA 188
R A++ A ++ + LP GLDT + T
Sbjct: 429 REALERAGLDEFVAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAH 488
Query: 189 VDAQSERIVQAAMVKLVTNQTVVIVANCLITIRNADCIIMV 229
+DA++E V A+ L +TV++V + L AD I+++
Sbjct: 489 LDAETEAEVLEALRALAQGRTVLLVTHRLALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 1e-13
Identities = 54/215 (25%), Positives = 93/215 (43%), Gaps = 50/215 (23%)
Query: 90 VPSGTTVALVGQSGSGKSTVINLVE---------------SFRFYAPEAEQEKIGLVSKE 134
+ G VA++G+SGSGKST++ L+ +A +E I ++++
Sbjct: 361 LAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQR 420
Query: 135 PIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVVA--------- 185
LF + +ASDE + A+Q EK ++ P GL+T +
Sbjct: 421 V-HLFSGTLR-DNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGG 478
Query: 186 -----------------------TNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRN 222
T +D +ER V A + + +T+++V + L +
Sbjct: 479 ERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLER 538
Query: 223 ADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRL 257
D II++ GKI+E+GTH EL+ + G Y +L +L
Sbjct: 539 MDRIIVLDNGKIIEEGTHAELLAN-NGRYKRLYQL 572
|
Length = 573 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 4e-13
Identities = 61/223 (27%), Positives = 102/223 (45%), Gaps = 65/223 (29%)
Query: 89 HVPSGTTVALVGQSGSGKSTVINLVESFRFYAPE-----------------AEQEKIGLV 131
+ G VA+VG SGSGKST++ L+ F PE A + ++G+V
Sbjct: 475 QIEPGEFVAIVGPSGSGKSTLLRLLLGFE--TPESGSVFYDGQDLAGLDVQAVRRQLGVV 532
Query: 132 SK----EPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV--- 184
+ +F + I G DE A ++A + I +P+G+ TV+
Sbjct: 533 LQNGRLMSGSIF------ENIAGGAPLTLDEAWE-AARMAGLAEDIRAMPMGMHTVISEG 585
Query: 185 -----------------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVAN 215
AT+A+D +++ IV ++ +L T +++A+
Sbjct: 586 GGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAH 643
Query: 216 CLITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQ 258
L TIRNAD I ++ G++V++GT+DEL+ EG ++QL R Q
Sbjct: 644 RLSTIRNADRIYVLDAGRVVQQGTYDELMAR-EGLFAQLARRQ 685
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 6e-13
Identities = 68/287 (23%), Positives = 119/287 (41%), Gaps = 69/287 (24%)
Query: 25 RGQIAYAEAEMLLSTQL---EPLEDMPLGQTSLNVN--AFAAGQAAACKMFETIERIPKI 79
RG AY+ +L+ + E +P G+ L+VN F Q
Sbjct: 282 RGSAAYSRIRAMLAEAPVVKDGSEPVPEGRGELDVNIRQFTYPQTD-------------- 327
Query: 80 NPYDNRFLQHVPSGTTVALVGQSGSGKSTVINLVE--------SFRFYA-P------EAE 124
+P + G + + G +GSGKST+++L++ RF+ P ++
Sbjct: 328 HPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSW 387
Query: 125 QEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV 184
+ ++ +VS+ P FLF D I G+ +A+ + I +LA+ I +LP G DT V
Sbjct: 388 RSRLAVVSQTP-FLFSD-TVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEV 445
Query: 185 --------------------------------ATNAVDAQSERIVQAAMVKLVTNQTVVI 212
A +AVD ++E + + + +TV+I
Sbjct: 446 GERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVII 505
Query: 213 VANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQE 259
A+ L + A I+++ G I ++G HD+L + G Y + R Q+
Sbjct: 506 SAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQS-GWYRDMYRYQQ 551
|
Length = 569 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 2e-12
Identities = 54/219 (24%), Positives = 91/219 (41%), Gaps = 62/219 (28%)
Query: 90 VPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQEKIGLVSKEPIFLFCDFNEG---Q 146
+ + +VG SGSGKST+ L+ F+ + + + F D + Q
Sbjct: 497 IKMNSKTTIVGMSGSGKSTLAKLL--VGFFQARSGEILLNG------FSLKDIDRHTLRQ 548
Query: 147 YIPY-------------------GKQNASDEHIRPAVQLANAEKSIDKLPLGLDT---VV 184
+I Y K+N S + I A ++A + I+ +PLG T
Sbjct: 549 FINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEE 608
Query: 185 ATNAVDAQSERIVQAAMV----------------------KLVTN------QTVVIVANC 216
++ Q +RI A + K+V N +T++ VA+
Sbjct: 609 GSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAHR 668
Query: 217 LITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLV 255
L + +D II++ GKI+E+G+HDEL+ D G Y+ L+
Sbjct: 669 LSVAKQSDKIIVLDHGKIIEQGSHDELL-DRNGFYASLI 706
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 3e-12
Identities = 55/233 (23%), Positives = 87/233 (37%), Gaps = 86/233 (36%)
Query: 428 IGSKLVEHGDATFGEVFKFLSEFGCFWCLESTAVAPNAD------KAKGSAASIFEILES 481
+G+ V G + G L +F + + + ++ ++ +A G+A + E+L++
Sbjct: 262 VGAHDVIAGKMSAGT----LGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQA 317
Query: 482 KPKIDWSSKDGMTPSTVRGDIVFEH-------------------------TVALVGENGN 516
+P I + P +RG+I FE TVALVG +G
Sbjct: 318 EPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGA 377
Query: 517 GKSTVISLAE-----------------------------------------------RFH 529
GKST+ L R+
Sbjct: 378 GKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYG 437
Query: 530 NP----EQVIYSWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRA 578
P E+V + FI++LP+G D +GERG+ LSGG +QRIA RA
Sbjct: 438 RPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARA 490
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 9e-12
Identities = 88/425 (20%), Positives = 145/425 (34%), Gaps = 146/425 (34%)
Query: 328 SIAAVIVFPIFGLLLSTSINIGAVGARLSTDASAVRSVVGDALGLIIQNIATIAAGLVIA 387
++ +++ P+ L+LS + + + VR +G+ ++++++ I ++ A
Sbjct: 155 ALILLLILPLLALVLS------LLARKSRKLSRRVREALGELNARLLESLSGIR--VIKA 206
Query: 388 FTAWKLAFITLAVPSLTIAEGYLKKKKNYERLH-----INAFCF----FIGSKLVEHGDA 438
F A + + L+ + L +++ +G LV G
Sbjct: 207 FGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVLVLALGGFLVLSGSL 266
Query: 439 TFGEVFKFLSEFGCFWC--LESTAVAPNADKAKGSAASIFEILESKPKIDWSSKDGMTPS 496
T G + F+ L+ V +A +A +FE+L+ +P++ +D P
Sbjct: 267 TVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEV----EDPPDPL 322
Query: 497 TVR-GDIVFEH-----------------------TVALVGENGNGKSTV----------- 521
G I FE+ VA+VG +G+GKST+
Sbjct: 323 KDTIGSIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT 382
Query: 522 ----------------------------------------ISLAERFHNPEQVIYSWIII 541
I+L E++ + +
Sbjct: 383 SGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLA 442
Query: 542 KCTNFIASLPQGSDLNVGERGLQLSGGLKQR--IARTRARNYCGCGSPPY---------- 589
FIA+LP G D VGERG+ LSGG +QR IAR RN PP
Sbjct: 443 NAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRN------PPILILDEATSAL 496
Query: 590 -------------------------H----YKNADITSVVKNGVIAEKGRHDALMKITDG 620
H KNAD V+ NG I E+G H+ L+ G
Sbjct: 497 DTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLA-KGG 555
Query: 621 TYASL 625
YA L
Sbjct: 556 LYARL 560
|
Length = 567 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 4e-11
Identities = 53/211 (25%), Positives = 72/211 (34%), Gaps = 99/211 (46%)
Query: 507 TVALVGENGNGKSTVISLAERFHNP----------------------------------- 531
VA+VG +G+GKST++ L RF++
Sbjct: 29 KVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFN 88
Query: 532 ----------------EQVIYSWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQR--I 573
E+VI + + + I P G D VGERGL+LSGG KQR I
Sbjct: 89 DTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAI 148
Query: 574 ARTRARNYCGCGSPPY-----------------------------------H----YKNA 594
AR +N PP H NA
Sbjct: 149 ARAILKN------PPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNA 202
Query: 595 DITSVVKNGVIAEKGRHDALMKITDGTYASL 625
D V+K+G I E+G H+ L+ G YA +
Sbjct: 203 DKIIVLKDGRIVERGTHEELLA-KGGLYAEM 232
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 2e-10
Identities = 47/206 (22%), Positives = 89/206 (43%), Gaps = 66/206 (32%)
Query: 89 HVPSGTTVALVGQSGSGKSTVINLVESFRFY-----------------APEAEQEKIGLV 131
+ G V +VG++GSGKS+++ + FR + +I ++
Sbjct: 26 SIKPGEKVGIVGRTGSGKSSLLLAL--FRLVELSSGSILIDGVDISKIGLHDLRSRISII 83
Query: 132 SKEPIFLFCD---FN---EGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV- 184
++P LF N G+Y SDE + A++ ++ ++ LP GLDTVV
Sbjct: 84 PQDP-VLFSGTIRSNLDPFGEY--------SDEELWQALERVGLKEFVESLPGGLDTVVE 134
Query: 185 -------------------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIV 213
AT +VD +++ ++Q + + + TV+ +
Sbjct: 135 EGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTI 194
Query: 214 ANCLITIRNADCIIMVSKGKIVEKGT 239
A+ L TI ++D I+++ KG++VE +
Sbjct: 195 AHRLDTIIDSDRILVLDKGRVVEFDS 220
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 8e-10
Identities = 54/219 (24%), Positives = 97/219 (44%), Gaps = 63/219 (28%)
Query: 89 HVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQEKIGLVSKEPIFLFCDFNEGQ-- 146
+ +G VAL+G++G GKST++ L+ R + P+ Q +I L++ +PI D++E
Sbjct: 362 QIKAGEKVALLGRTGCGKSTLLQLLT--RAWDPQ--QGEI-LLNGQPI---ADYSEAALR 413
Query: 147 ----------YIPYG---------KQNASDEHIRPAVQLANAEKSIDKLPLGLDT----- 182
++ NASDE + +Q EK ++ GL+
Sbjct: 414 QAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEG 472
Query: 183 ------------VVA---------------TNAVDAQSERIVQAAMVKLVTNQTVVIVAN 215
+A T +DA++ER + + + N+TV+++ +
Sbjct: 473 GRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITH 532
Query: 216 CLITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQL 254
L + D I ++ G+I+E+GTH EL+ +G Y QL
Sbjct: 533 RLTGLEQFDRICVMDNGQIIEQGTHQELLAQ-QGRYYQL 570
|
Length = 574 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 57.3 bits (138), Expect = 2e-08
Identities = 43/169 (25%), Positives = 84/169 (49%), Gaps = 45/169 (26%)
Query: 130 LVSKEPIFLFCDFNEGQY--IPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV--- 184
+VS+EP+ FN Y I +GK++A+ E ++ A + A ++ I+ LP DT V
Sbjct: 1300 IVSQEPML----FNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPY 1355
Query: 185 -----------------------------ATNAVDAQSERIVQAAMV--KLVTNQTVVIV 213
AT+++D+ SE++++ +V K ++T++ +
Sbjct: 1356 GKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITI 1415
Query: 214 ANCLITIRNADCIIMVSK----GKIVE-KGTHDELIEDPEGAYSQLVRL 257
A+ + +I+ +D I++ + G V+ GTH+EL+ +G Y + V+L
Sbjct: 1416 AHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKKYVKL 1464
|
Length = 1466 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 2e-08
Identities = 64/273 (23%), Positives = 120/273 (43%), Gaps = 75/273 (27%)
Query: 96 VALVGQSGSGKSTVINLVESFRFYAPEAEQ-----------------EKIGLVSKEPIFL 138
V +VG++G+GKS+++N + FR E + + +G++ + P+ L
Sbjct: 1268 VGIVGRTGAGKSSMLNAL--FRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPV-L 1324
Query: 139 FCD---FNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV----------- 184
F FN P+ + N +D + +++ A+ + I + LGLD V
Sbjct: 1325 FSGTVRFNLD---PFNEHNDAD--LWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQ 1379
Query: 185 ---------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRNA 223
AT AVD +++ ++Q + + + T++I+A+ L TI +
Sbjct: 1380 RQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDC 1439
Query: 224 DCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQEGAKEAQDKSLGVKHILRGFPGPIG 283
D I+++ G++VE T + L+ + A+S++V+ GA AQ LR
Sbjct: 1440 DRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQ-STGAANAQ--------YLRSL----- 1485
Query: 284 VYETAERSEDRIEKDPTEIEKRKKVSVTRLAYA 316
V+ E R E + +RK ++ +R A A
Sbjct: 1486 VFGGDEDRLAREESKALDG-QRKWLASSRWAAA 1517
|
Length = 1622 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 3e-08
Identities = 53/230 (23%), Positives = 85/230 (36%), Gaps = 78/230 (33%)
Query: 426 FFIGSKLVEHGDATFGEVFKFLSEFGCFWCLESTAVAPNAD--KAKGSAASIFEILESKP 483
+ G+ LV G+ T G++ F G F + D +AK + + +IL++ P
Sbjct: 395 LWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPP 454
Query: 484 KIDWSSKDGMTPSTVRGDIVFEH------------------------TVALVGENGNGKS 519
+ + K + ++G+I FE+ VA+VG +G+GKS
Sbjct: 455 EQE-GDKTLIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKS 513
Query: 520 TV-------------------ISLAE----------------------------RFHNP- 531
T+ + L + NP
Sbjct: 514 TLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPE 573
Query: 532 ---EQVIYSWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRA 578
E++I + + FI +LP G D VGE G LSGG +QR+A RA
Sbjct: 574 ATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARA 623
|
Length = 709 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 3e-08
Identities = 45/195 (23%), Positives = 77/195 (39%), Gaps = 53/195 (27%)
Query: 93 GTTVALVGQSGSGKSTVINLVESFRFYAPEAEQ-----------------EKIGLVSKEP 135
G VA++G+ GSGKST++ L+ Y P + IG V ++
Sbjct: 30 GEKVAIIGRVGSGKSTLLKLL--AGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDV 87
Query: 136 IFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVVA---------- 185
+ + I G A DE I A +LA ++K P GLD +
Sbjct: 88 TLFYGTLRDN--ITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQ 145
Query: 186 ----------------------TNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRNA 223
T+A+D SE ++ + +L+ ++T++I+ + +
Sbjct: 146 RQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLV 205
Query: 224 DCIIMVSKGKIVEKG 238
D II++ G+IV G
Sbjct: 206 DRIIVMDSGRIVADG 220
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 5e-08
Identities = 36/121 (29%), Positives = 50/121 (41%), Gaps = 48/121 (39%)
Query: 546 FIASLPQGSDLNVGERGLQLSGGLKQR--IARTRARNYCGCGSPPY-------------- 589
FI LP+G D +GERG++LSGG +QR IAR ++ PP
Sbjct: 120 FIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKD------PPILILDEATSALDTES 173
Query: 590 ---------------------H----YKNADITSVVKNGVIAEKGRHDALMKITDGTYAS 624
H +NAD V+++G I E+G H+ L+ G YA
Sbjct: 174 ERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLA-QGGVYAK 232
Query: 625 L 625
L
Sbjct: 233 L 233
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 7e-08
Identities = 47/202 (23%), Positives = 80/202 (39%), Gaps = 53/202 (26%)
Query: 93 GTTVALVGQSGSGKSTVINLVESFRFYAPEAEQ-----------------EKIGLVSKEP 135
G VA++G+ GSGKST++ L+ Y P IG V ++P
Sbjct: 491 GEKVAIIGRIGSGKSTLLKLL--LGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDP 548
Query: 136 IFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVVA---------- 185
+ + I G A DE I A +LA + + + P GLD +
Sbjct: 549 RLFYGTLRDN--IALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQ 606
Query: 186 ----------------------TNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRNA 223
T+A+D +SE + + + + +T+V+V + +
Sbjct: 607 RQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLV 666
Query: 224 DCIIMVSKGKIVEKGTHDELIE 245
D II++ G+IV G D+++E
Sbjct: 667 DRIIVMDNGRIVADGPKDQVLE 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 1e-07
Identities = 40/132 (30%), Positives = 50/132 (37%), Gaps = 51/132 (38%)
Query: 498 VRGDIVFEHTVALVGENGNGKSTVISLAERFHNPEQ-VIYS------------------- 537
+ I TVA+VGE+G GKST++ L RF++ I
Sbjct: 282 ISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGI 341
Query: 538 ------------WIIIKCTN-------------------FIASLPQGSDLNVGERGLQLS 566
IK FI SLP+G D VGERGL+LS
Sbjct: 342 VPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLS 401
Query: 567 GGLKQRIARTRA 578
GG KQR+A R
Sbjct: 402 GGEKQRVAIART 413
|
Length = 497 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 2e-07
Identities = 32/123 (26%), Positives = 45/123 (36%), Gaps = 51/123 (41%)
Query: 507 TVALVGENGNGKSTVISLAERFHNPEQ-------------VIYSW--------------- 538
TVA+VG G GK+T+I+L RF++P++ S
Sbjct: 31 TVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFS 90
Query: 539 ------------------IIIKC-----TNFIASLPQGSDLNVGERGLQLSGGLKQRIAR 575
+I +FI LP G D +GE G LS G +Q +A
Sbjct: 91 GTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAI 150
Query: 576 TRA 578
RA
Sbjct: 151 ARA 153
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 2e-07
Identities = 45/183 (24%), Positives = 83/183 (45%), Gaps = 40/183 (21%)
Query: 90 VPSGTTVALVGQSGSGKSTVINLVESFRFYAPE-----------------AEQEKIGLVS 132
V +G + +VG++G+GKST+I + FRF E + + ++
Sbjct: 31 VKAGEKIGIVGRTGAGKSTLILAL--FRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIP 88
Query: 133 KEPIFLFCDFNEGQYIPYGKQNASDEHIRPAV--------------QLANAEKSIDKLP- 177
++P LF P+ + SDE I A+ QL +++ K P
Sbjct: 89 QDPT-LFSGTIRSNLDPFDEY--SDEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPR 145
Query: 178 -LGLDTVVATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRNADCIIMVSKGKIVE 236
L LD AT ++D ++ ++Q + + TN T++ +A+ L TI + D I+++ G++ E
Sbjct: 146 VLVLDE--ATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKE 203
Query: 237 KGT 239
Sbjct: 204 YDH 206
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 3e-07
Identities = 48/264 (18%), Positives = 87/264 (32%), Gaps = 57/264 (21%)
Query: 90 VPSGTTVALVGQSGSGKSTVINL-------------VESFRFYAPEAE-QEKIGLVSKEP 135
V G L+G +G+GK+T++ + V + A+ + +IG V +EP
Sbjct: 28 VEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEP 87
Query: 136 IF-----------LFCDFNEGQYIPYGKQNASDEHIRP----AVQLAN-AEKSIDKLPLG 179
F YG E L + A K + L G
Sbjct: 88 SLYPELTVRENLEFFARL-------YGLSKEEAEERIEELLELFGLEDKANKKVRTLSGG 140
Query: 180 ----LDTVVA-------------TNAVDAQSERIVQAAMVKLVT--NQTVVIVANCLITI 220
L +A T+ +D +S R + + +L T+++ + L
Sbjct: 141 MKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEA 200
Query: 221 -RNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQEGAKEAQDKSLGVKHILRGFP 279
D +I+++ GKI+ +GT +EL E G + + + L +
Sbjct: 201 EELCDRVIILNDGKIIAEGTPEELKEKFGGKGVIELEPERLELAELLEGLKLVKGEEELA 260
Query: 280 GPIGVYETAERSEDRIEKDPTEIE 303
+ + IE +E
Sbjct: 261 EILEALLEEGVKIESIEVKEPSLE 284
|
Length = 293 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 9e-07
Identities = 55/229 (24%), Positives = 103/229 (44%), Gaps = 57/229 (24%)
Query: 82 YDNRF---LQHVPS----GTTVALVGQSGSGKSTV----INLVESFR-----------FY 119
Y+N L+HV + G V + G++GSGKS++ +V+ F
Sbjct: 29 YENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKL 88
Query: 120 APEAEQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLG 179
+ ++ ++ ++PI LF P K +D+ + A+++A + + LP G
Sbjct: 89 PLHTLRSRLSIILQDPI-LFSGSIRFNLDPECK--CTDDRLWEALEIAQLKNMVKSLPGG 145
Query: 180 LDTVV--------------------------------ATNAVDAQSERIVQAAMVKLVTN 207
LD VV AT ++D +E I+Q ++ +
Sbjct: 146 LDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFAD 205
Query: 208 QTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVR 256
+TVV +A+ + TI +AD ++++S+G +VE T + L+ +G ++ LVR
Sbjct: 206 RTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLVR 254
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (123), Expect = 1e-06
Identities = 50/217 (23%), Positives = 98/217 (45%), Gaps = 51/217 (23%)
Query: 96 VALVGQSGSGKSTVINL------VESFRFYAPEAEQEKIGL---------VSKEPIFLFC 140
V +VG++G+GKS+++N +E R + + K GL + + P+ LF
Sbjct: 1265 VGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPV-LFS 1323
Query: 141 DFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV---------------- 184
P+ + N +D + A++ A+ + ID+ P GLD V
Sbjct: 1324 GTVRFNIDPFSEHNDAD--LWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLS 1381
Query: 185 ----------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRNADCIIM 228
AT +VD +++ ++Q + + + T++++A+ L TI + D I++
Sbjct: 1382 LARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILV 1441
Query: 229 VSKGKIVEKGTHDELIEDPEGAYSQLVRLQEGAKEAQ 265
+S G+++E + EL+ A+ ++V G AQ
Sbjct: 1442 LSSGQVLEYDSPQELLSRDTSAFFRMVH-STGPANAQ 1477
|
Length = 1495 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 4e-06
Identities = 21/32 (65%), Positives = 23/32 (71%)
Query: 547 IASLPQGSDLNVGERGLQLSGGLKQRIARTRA 578
I LPQG D VGERG+ LSGG KQRI+ RA
Sbjct: 434 ILRLPQGYDTEVGERGVMLSGGQKQRISIARA 465
|
Length = 569 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 5e-06
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 349 GAVGARLSTDASAVRSVVGDALGLIIQNIATIAAGLVIAFT-AWKLAFITLAV-PSLTIA 406
G + +RL+ D S +R +GD LGL Q++AT+ G ++ F WKL + LA+ P L +
Sbjct: 98 GELTSRLTNDVSKIRDGLGDKLGLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILL 157
Query: 407 EGYLKKK 413
L KK
Sbjct: 158 SAVLAKK 164
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 6e-06
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 27/86 (31%)
Query: 471 SAASIFEILESKPKIDWSSKDGMTPSTVRGDIVFEH------------------------ 506
+A S+F +L+S P+ D RGD+ F +
Sbjct: 303 AAESLFTLLDSPPEKD---TGTRAIERARGDVEFRNVTFRYPGRDRPALDSISLVIEPGE 359
Query: 507 TVALVGENGNGKSTVISLAERFHNPE 532
TVALVG +G+GKST+++L RF+ P+
Sbjct: 360 TVALVGRSGSGKSTLVNLIPRFYEPD 385
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 6e-06
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 544 TNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRA 578
T F+ P G D+ +GERG LSGG +Q +A RA
Sbjct: 581 TEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARA 615
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 6e-06
Identities = 44/151 (29%), Positives = 60/151 (39%), Gaps = 53/151 (35%)
Query: 487 WSSKDGMTPSTVRGDIVFE----HTVALVGENGNGKSTVIS--LAE------RFHNPEQV 534
W S + T T++ DI E VA+VG G+GKS+++S L E P +
Sbjct: 10 WDSGEQETSFTLK-DINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSI 68
Query: 535 IY----SWI----------------------IIKCTNF---IASLPQGSDLNVGERGLQL 565
Y WI +IK + LP G +GE+G+ L
Sbjct: 69 AYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINL 128
Query: 566 SGGLKQRIARTRARNYCGCGSPPYHYKNADI 596
SGG KQRI+ RA Y +ADI
Sbjct: 129 SGGQKQRISLARA-----------VYSDADI 148
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 7e-06
Identities = 20/33 (60%), Positives = 22/33 (66%)
Query: 546 FIASLPQGSDLNVGERGLQLSGGLKQRIARTRA 578
FI P G D VGERG QLSGG +QR+A RA
Sbjct: 453 FIERKPDGYDTVVGERGRQLSGGERQRLAIARA 485
|
Length = 588 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 8e-06
Identities = 35/122 (28%), Positives = 48/122 (39%), Gaps = 51/122 (41%)
Query: 508 VALVGENGNGKSTVISLAERFHNPEQ---------------------------------- 533
V +VG +G+GKST+ L +RF+ PE
Sbjct: 31 VGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNR 90
Query: 534 -----------------VIYSWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIART 576
VI + + +FI+ LP+G D VGE+G LSGG +QRIA
Sbjct: 91 SIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIA 150
Query: 577 RA 578
RA
Sbjct: 151 RA 152
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 1e-05
Identities = 33/122 (27%), Positives = 48/122 (39%), Gaps = 51/122 (41%)
Query: 508 VALVGENGNGKSTVISLAERFHNP------------------------------------ 531
+ +VG +G+GKST+ L +R + P
Sbjct: 486 IGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSR 545
Query: 532 ---------------EQVIYSWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIART 576
E VI++ + +FI+ LPQG + VGE+G LSGG +QRIA
Sbjct: 546 SIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIA 605
Query: 577 RA 578
RA
Sbjct: 606 RA 607
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 1e-05
Identities = 20/33 (60%), Positives = 23/33 (69%)
Query: 546 FIASLPQGSDLNVGERGLQLSGGLKQRIARTRA 578
FI+ L G D VGE+G QLSGG KQR+A RA
Sbjct: 132 FISELASGYDTEVGEKGSQLSGGQKQRVAIARA 164
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 45.8 bits (110), Expect = 1e-05
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 21/87 (24%)
Query: 507 TVALVGENGNGKSTVISLAERFHNPE--------QVIYSWIIIKCTNFIASLPQGSDL-- 556
VA+VG +G+GKST++ L R ++P + + IA +PQ L
Sbjct: 30 KVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFS 89
Query: 557 -----NVGERGLQLSGGLKQRIARTRA 578
N+ LSGG +QRIA RA
Sbjct: 90 GTIRENI------LSGGQRQRIAIARA 110
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 3e-05
Identities = 31/140 (22%), Positives = 53/140 (37%), Gaps = 42/140 (30%)
Query: 426 FFIGSKLVEHGDATFGEVFKFLSEFGCFWCLESTAVAPNADKAKGSAASI---------- 475
+G+ LV+ G GEV F+ F +T + D+ +
Sbjct: 258 LVLGAALVQKGQLRVGEVVAFVG-F-------ATLLIGRLDQVVAFINQVFMAAPKLEEF 309
Query: 476 FEILESKPKIDWSSKDGMTPSTVRGDIVFEH-----------------------TVALVG 512
FE+ ++ P + + V+G + F+ TVA+VG
Sbjct: 310 FEVEDAVPDVR-DPPGAIDLGRVKGAVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVG 368
Query: 513 ENGNGKSTVISLAERFHNPE 532
G GKST+I+L +R +P+
Sbjct: 369 PTGAGKSTLINLLQRVFDPQ 388
|
Length = 588 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 3e-05
Identities = 29/75 (38%), Positives = 38/75 (50%), Gaps = 10/75 (13%)
Query: 504 FEHTVALVGENGNGKSTVISLAERFHNPEQVIYSWIIIKCTNFIASLPQGSDLNVGERGL 563
F+ T+A EN I+ +PE+VI + + I LPQG D +GE G
Sbjct: 422 FDGTIA---EN-------IARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGA 471
Query: 564 QLSGGLKQRIARTRA 578
LSGG +QRIA RA
Sbjct: 472 TLSGGQRQRIALARA 486
|
Length = 580 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 4e-05
Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 10/75 (13%)
Query: 504 FEHTVALVGENGNGKSTVISLAERFHNPEQVIYSWIIIKCTNFIASLPQGSDLNVGERGL 563
F TVA EN I+ +PE++I + + I LP G D +G G
Sbjct: 404 FPGTVA---EN-------IARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGA 453
Query: 564 QLSGGLKQRIARTRA 578
LSGG +QRIA RA
Sbjct: 454 TLSGGQRQRIALARA 468
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 5e-05
Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 508 VALVGENGNGKSTVISLAERFHNPEQVIYSWIIIKCTNFIASLPQGSDLNVGERGLQLSG 567
VALVG NG+GKST++ P I+I + + +G QLSG
Sbjct: 28 VALVGPNGSGKSTLLRAIAGLLKPTSGE---ILIDGKDIAKLPLEELRRRIGYV-PQLSG 83
Query: 568 GLKQRIARTRA 578
G +QR+A RA
Sbjct: 84 GQRQRVALARA 94
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 7e-05
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 522 ISLAERFHNPEQVIYSWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRA 578
I+L + E+++ + + T+F+ P G DL +GERG LSGG +Q +A RA
Sbjct: 98 ITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARA 154
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 31/97 (31%)
Query: 464 NADKAKGSAA--SIFEILESKPKIDWSSKDG-MTPSTVRGDIVFEH-------------- 506
NA +G AA ++F IL+ + + D +G +GDI F +
Sbjct: 305 NAQFQRGMAACQTLFAILDLEQEKD----EGKRVIERAKGDIEFRNVTFTYPGKEVPALR 360
Query: 507 ----------TVALVGENGNGKSTVISLAERFHNPEQ 533
TVALVG +G+GKST+ +L RF++ ++
Sbjct: 361 NINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDE 397
|
Length = 582 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 4e-04
Identities = 46/206 (22%), Positives = 88/206 (42%), Gaps = 54/206 (26%)
Query: 89 HVPSGTTVALVGQSGSGKSTVINLVESFRFY-APEAE----------------QEKIGLV 131
+ G V +VG++G+GKS++ + FR + E E + KI ++
Sbjct: 1308 TIHGGEKVGIVGRTGAGKSSLT--LGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITII 1365
Query: 132 SKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV------- 184
++P+ LF P+ + SDE + A++LA+ + + LP LD
Sbjct: 1366 PQDPV-LFSGSLRMNLDPFSQY--SDEEVWWALELAHLKTFVSALPDKLDHECAEGGENL 1422
Query: 185 -------------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLIT 219
AT AVD +++ ++Q+ + + TV+ +A+ L T
Sbjct: 1423 SVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNT 1482
Query: 220 IRNADCIIMVSKGKIVEKGTHDELIE 245
I + +I++ KG++ E G L++
Sbjct: 1483 IMDYTRVIVLDKGEVAEFGAPSNLLQ 1508
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 5e-04
Identities = 34/120 (28%), Positives = 45/120 (37%), Gaps = 46/120 (38%)
Query: 546 FIASLPQGSDLNVGERGLQLSGGLKQR--IARTRARNYCGCGSPPY-------------- 589
FI + G D +GE G+ LSGG +QR IAR R+ SP
Sbjct: 462 FINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRD-----SPILILDEATSALDTESE 516
Query: 590 --------------------H----YKNADITSVVKNGVIAEKGRHDALMKITDGTYASL 625
H + AD VV++G I E+G H L+ +G YA L
Sbjct: 517 RAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLA-QNGVYAQL 575
|
Length = 582 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 5e-04
Identities = 53/222 (23%), Positives = 93/222 (41%), Gaps = 57/222 (25%)
Query: 90 VPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQEKI-------GLVS---------- 132
+P G VA+VGQ G GKS++++ A AE +K+ G V+
Sbjct: 661 IPEGALVAVVGQVGCGKSSLLS--------ALLAEMDKVEGHVHMKGSVAYVPQQAWIQN 712
Query: 133 ---KEPIFLFCDFNEGQY---------------IPYGKQNASDEH-------IRPAVQLA 167
+E I NE Y +P G + E + V LA
Sbjct: 713 DSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLA 772
Query: 168 NAEKSIDKLPLGLDTVVATNAVDAQSERIVQAAMVK---LVTNQTVVIVANCLITIRNAD 224
A S + L D + +AVDA + + ++ ++ N+T ++V + + + D
Sbjct: 773 RAVYSNADIYLFDDPL---SAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVD 829
Query: 225 CIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQEGAKEAQD 266
II++S GKI E G++ EL+ +GA+++ +R ++
Sbjct: 830 VIIVMSGGKISEMGSYQELL-QRDGAFAEFLRTYAPDEQQGH 870
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 6e-04
Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 3/109 (2%)
Query: 473 ASIFEILESKPKIDWSSKDGMTPSTVRGDIVFEHTVALVGENGNGKSTVISLAERFHNP- 531
A + E+ + K+ WS+K+ PS ++VA + + + F +P
Sbjct: 46 AILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNATVEENITFGSPF 105
Query: 532 EQVIYSWIIIKCT--NFIASLPQGSDLNVGERGLQLSGGLKQRIARTRA 578
+ Y + C+ I LP G +GERG+ LSGG +QRI RA
Sbjct: 106 NKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARA 154
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 6e-04
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Query: 506 HTVALVGENGNGKSTVISLAERFHNPEQVIYSWIIIKCTNFIASLP-QGSDLNVGERGLQ 564
+ +VG G+GK+T+ R P I I + + + Q + VG +
Sbjct: 3 EVILIVGPPGSGKTTLARALARELGPPGGGV--IYIDGEDILEEVLDQLLLIIVGGKKAS 60
Query: 565 LSGGLKQRIARTRARN 580
SG L+ R+A AR
Sbjct: 61 GSGELRLRLALALARK 76
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 7e-04
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 592 KNADITSVVKNGVIAEKGRHDALMKITDGTYASL 625
+NAD+ +V++NG + E+G HD LM G YA L
Sbjct: 202 RNADLIAVLQNGQVVEQGTHDELMA-QKGVYAKL 234
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 7e-04
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 544 TNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRA 578
+F+ LP G D +GE G+ LSGG +QR+A RA
Sbjct: 449 QDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARA 483
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 7e-04
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 546 FIASLPQGSDLNVGERGLQLSGGLKQRIARTRA 578
F+A+LPQG D +GE G LSGG QR+A RA
Sbjct: 440 FVAALPQGLDTPIGEGGAGLSGGQAQRLALARA 472
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 8e-04
Identities = 21/33 (63%), Positives = 21/33 (63%)
Query: 546 FIASLPQGSDLNVGERGLQLSGGLKQRIARTRA 578
FI SLP D NVG G LSGG KQRIA RA
Sbjct: 1340 FIESLPNKYDTNVGPYGKSLSGGQKQRIAIARA 1372
|
Length = 1466 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 8e-04
Identities = 46/174 (26%), Positives = 73/174 (41%), Gaps = 46/174 (26%)
Query: 89 HVPSGTTVALVGQSGSGKSTVINL------------------VESFRFYAPEAEQEKIGL 130
++ +G VAL+G SGSGKST++ + P + +IG+
Sbjct: 22 NIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRR-RIGM 80
Query: 131 VSKEPIFLFCDFNEGQYIPYG-----KQNASDEHIRPAVQLANA---EKSIDKLPLGLDT 182
V ++ LF + I G +Q R V LA A + + L LD
Sbjct: 81 VFQDFA-LFPHLTVLENIALGLSGGQQQ-------R--VALARALAMDPDV----LLLDE 126
Query: 183 VVATNAVDAQSERIVQAAMVKLVTNQ--TVVIVANCL-ITIRNADCIIMVSKGK 233
T+A+D + R V+A + L TVV+V + L R AD ++++ GK
Sbjct: 127 --PTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 42.0 bits (98), Expect = 0.001
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 9/91 (9%)
Query: 49 LGQTSLNVNAFAAGQAAACKMFETIERIPKIN------PYDNRFLQHVPSGTTVALVGQS 102
G+ N AFA AA +M R I P +R + +P VA+VG
Sbjct: 21 DGKVGNNAKAFA--VAAIGQMARQAMRTADIEEKKLHVPMVDRTPKDLPPPFIVAVVGPP 78
Query: 103 GSGKSTVI-NLVESFRFYAPEAEQEKIGLVS 132
G+GKST+I +LV F + + I +VS
Sbjct: 79 GTGKSTLIRSLVRRFTKQTIDEIRGPITVVS 109
|
Length = 1077 |
| >gnl|CDD|206747 cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 0.001
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 7/47 (14%)
Query: 87 LQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQEKIGLVSK 133
L+ + G T LVGQSG GKST++N + PE G +S+
Sbjct: 79 LRELLKGKTSVLVGQSGVGKSTLLNAL------LPELVL-ATGEISE 118
|
YjeQ (YloQ in Bacillus subtilis) is a ribosomal small subunit-dependent GTPase; hence also known as RsgA. YjeQ is a late-stage ribosomal biogenesis factor involved in the 30S subunit maturation, and it represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. Length = 211 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.001
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESF 116
F G A+VG SGSGKST++NL+ F
Sbjct: 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGF 47
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.001
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 90 VPSGTTVALVGQSGSGKSTVINLVESF 116
VP+G VA++G SG+GKST++NL+ F
Sbjct: 22 VPAGEIVAILGPSGAGKSTLLNLIAGF 48
|
Length = 231 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.002
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 353 ARLSTDASAVRSVVGDALGLIIQNIATIAAGLVIAFT-AWKLAFITL-AVPSLTIAEGYL 410
+RL+ D AV ++V L L+ +I + LV+ F+ +W+LA I L +P L + L
Sbjct: 113 SRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLL 172
Query: 411 KKK 413
+K
Sbjct: 173 ARK 175
|
Length = 567 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.002
Identities = 18/35 (51%), Positives = 22/35 (62%)
Query: 544 TNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRA 578
+FI G D VGERG +LSGG +QR+A RA
Sbjct: 451 HDFILKRSNGYDTLVGERGNRLSGGERQRLAIARA 485
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.002
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 546 FIASLPQGSDLNVGERGLQLSGGLKQRIARTRA 578
F+ LPQG D +G++ LS G QR+A RA
Sbjct: 467 FLPLLPQGLDTPIGDQAAGLSVGQAQRLALARA 499
|
Length = 588 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.002
Identities = 34/160 (21%), Positives = 62/160 (38%), Gaps = 38/160 (23%)
Query: 89 HVPSGTTVALVGQSGSGKSTVINLV--------ESFRFYAPEAEQEKIGLVSKEPIFLFC 140
+ +G VALVG +GSGKST++ + + + + + + ++
Sbjct: 21 TLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ 80
Query: 141 DFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV-----ATNAVDAQSER 195
+ GQ +Q V LA A L L+ + T+ +D S
Sbjct: 81 -LSGGQ-----RQ---------RVALARA--------LLLNPDLLLLDEPTSGLDPASRE 117
Query: 196 IVQAAMVKLV-TNQTVVIVANCLITIRNA-DCIIMVSKGK 233
+ + +L +TV+IV + A D +I++ GK
Sbjct: 118 RLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.002
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 89 HVPSGTTVALVGQSGSGKSTVINLV 113
V G VALVG SG GKST++ ++
Sbjct: 26 SVEEGEFVALVGPSGCGKSTLLRII 50
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.003
Identities = 14/27 (51%), Positives = 22/27 (81%)
Query: 507 TVALVGENGNGKSTVISLAERFHNPEQ 533
TVALVG +G+GKST+++L RF++ +
Sbjct: 30 TVALVGPSGSGKSTLVNLIPRFYDVDS 56
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.003
Identities = 42/149 (28%), Positives = 58/149 (38%), Gaps = 50/149 (33%)
Query: 487 WSSK-DGMTPSTVRGDIVFEHTVALVGENGNGKSTVIS--LAE--RFHNPEQVI------ 535
W SK + T S + D+ VA+VG G GK+++IS L E + VI
Sbjct: 624 WDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAY 683
Query: 536 ---YSWII----------------------IKCTNF---IASLPQGSDLNVGERGLQLSG 567
SWI I T + LP G +GERG+ +SG
Sbjct: 684 VPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISG 743
Query: 568 GLKQRIARTRARNYCGCGSPPYHYKNADI 596
G KQR++ RA Y N+D+
Sbjct: 744 GQKQRVSMARAV-----------YSNSDV 761
|
Length = 1622 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.003
Identities = 19/76 (25%), Positives = 41/76 (53%), Gaps = 11/76 (14%)
Query: 185 ATNAVDAQSERIVQAAMVKLV------TNQTVVIVANCLITIRN-ADCIIMVSKGKIVEK 237
+A+D VQA ++ L+ T + +++ L +R AD + ++ G+IVE+
Sbjct: 456 PVSALDV----SVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEE 511
Query: 238 GTHDELIEDPEGAYSQ 253
G +++ E+P+ Y++
Sbjct: 512 GPTEKVFENPQHPYTR 527
|
Length = 539 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.004
Identities = 51/230 (22%), Positives = 72/230 (31%), Gaps = 79/230 (34%)
Query: 426 FFIGSKLVEHGDATFGEVFKFL---SEFGCFWCLESTAVAPNADKA-KGSAASIFEILES 481
+IG +L+ GD T L EF F L +A A + +A +F +LES
Sbjct: 243 VYIGFRLLGEGDLTLFAGLFVLILAPEF--FQPLRDLGSFFHAAAAGEAAADKLFTLLES 300
Query: 482 KPKIDWSSKDGMTPSTVRGDIVFEH-----------------------TVALVGENGNGK 518
S + + +I E+ ALVG +G GK
Sbjct: 301 PVATPGSGEKAEVANEPPIEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGK 360
Query: 519 STVISLAERFHNPEQVIYSWIIIKCTNF--------IASLPQ------------------ 552
ST+++L F P Q I + I+ + Q
Sbjct: 361 STLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARP 420
Query: 553 ------------------------GSDLNVGERGLQLSGGLKQRIARTRA 578
G D +GE G LSGG QR+A RA
Sbjct: 421 DASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARA 470
|
Length = 559 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.004
Identities = 46/203 (22%), Positives = 82/203 (40%), Gaps = 50/203 (24%)
Query: 90 VPSGTTVALVGQSGSGKSTVINLV---------------ESFRFYAPEAEQEKIGLVSKE 134
+ +G +A++G SGSGKST+ L+ + + E + IG + ++
Sbjct: 341 LQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQD 400
Query: 135 PIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVVAT-------- 186
+ LF + I +NA E I A +LA + I +LP G DTV+
Sbjct: 401 -VELF-PGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGG 458
Query: 187 -----------------------NA-VDAQSERIVQAAMVKL-VTNQTVVIVANCLITIR 221
N+ +D + E+ + A+ L TVV++ + +
Sbjct: 459 QRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLG 518
Query: 222 NADCIIMVSKGKIVEKGTHDELI 244
D I+++ G+I G DE++
Sbjct: 519 CVDKILVLQDGRIARFGERDEVL 541
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|217416 pfam03193, DUF258, Protein of unknown function, DUF258 | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 0.004
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 7/42 (16%)
Query: 92 SGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQEKIGLVSK 133
G T L GQSG GKST++N + PE + + G +S+
Sbjct: 34 KGKTSVLAGQSGVGKSTLLNAL------LPELDL-RTGEISE 68
|
Length = 161 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 38.1 bits (90), Expect = 0.004
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 21/89 (23%)
Query: 499 RGDIVFEHTVALVGENGNGKSTVISLAERFHNP---------EQVIYSWIIIKCTNFIAS 549
+G+I L+G NG GK+T+I + P + + +K I
Sbjct: 25 KGEIY-----GLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVK--RRIGY 77
Query: 550 LPQG----SDLNVGERGLQLSGGLKQRIA 574
LP+ +L V E L+LSGG+KQR+A
Sbjct: 78 LPEEPSLYENLTVREN-LKLSGGMKQRLA 105
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 0.004
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 17/89 (19%)
Query: 508 VALVGENGNGKSTVISLAERFHNPE--------QVIYSWIIIKCTNFIASLPQGSDLNVG 559
V ++G NG GKST++ P + + S + IA +PQ +L +G
Sbjct: 28 VGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALEL-LG 86
Query: 560 -----ERGL-QLSGGLKQR--IARTRARN 580
+R +LSGG +QR +AR A+
Sbjct: 87 LAHLADRPFNELSGGERQRVLLARALAQE 115
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 0.004
Identities = 57/223 (25%), Positives = 88/223 (39%), Gaps = 57/223 (25%)
Query: 90 VPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAE-----------------QEKIGLVS 132
G +VG SG+GKST+I L+ R P + KIG+V
Sbjct: 26 FEGGAIYTIVGPSGAGKSTLIKLIN--RLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVF 83
Query: 133 KEPIFLFCDFNEG------QYIPY--GKQNASDEHIRPAVQLAN--AEKSIDKLPLGLDT 182
++P LF EG +Y P G++N E+ V L A + + L G
Sbjct: 84 QQP-HLF----EGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQ 138
Query: 183 VVA-----------------TNAVDAQSERIVQAAMVKLVT--NQTVV-IVANCLITIRN 222
V+ T+A+D S I++ +VKL N TV+ I N R
Sbjct: 139 RVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRI 198
Query: 223 ADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLV---RLQEGAK 262
D ++KG +VE + +P+ ++L +L+E K
Sbjct: 199 GDYTAFLNKGILVEYAKTYDFFTNPQNEVTKLFIQGKLKEEVK 241
|
Length = 241 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 38.7 bits (90), Expect = 0.004
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA 120
F +V G VA++G SG+GKST++NL+ F A
Sbjct: 16 EFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPA 51
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 632 | |||
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 99.98 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 99.98 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.98 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 99.98 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 99.98 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 99.97 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 99.97 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 99.97 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 99.97 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 99.97 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 99.97 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.97 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 99.97 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 99.97 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 99.97 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.97 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 99.96 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 99.96 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 99.96 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 99.96 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 99.96 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.95 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 99.95 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 99.95 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 99.94 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 99.94 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.94 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 99.94 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 99.94 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 99.93 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 99.93 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 99.92 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 99.92 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 99.92 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.92 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 99.92 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 99.92 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 99.92 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 99.92 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.91 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 99.91 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 99.91 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 99.91 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 99.91 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 99.91 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 99.91 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 99.91 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 99.91 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 99.91 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 99.9 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 99.9 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 99.9 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 99.9 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 99.9 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 99.89 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 99.89 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 99.89 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 99.89 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 99.89 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 99.89 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 99.89 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 99.89 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 99.89 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 99.89 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 99.89 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 99.89 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 99.89 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 99.89 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 99.89 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 99.89 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 99.89 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 99.89 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 99.89 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 99.89 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 99.89 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 99.89 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 99.89 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 99.88 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 99.88 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.88 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 99.88 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 99.88 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 99.88 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 99.88 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.88 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 99.88 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 99.88 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 99.88 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 99.88 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 99.88 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 99.88 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 99.88 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 99.88 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 99.88 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.88 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 99.88 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.88 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.88 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 99.88 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 99.88 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 99.88 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 99.88 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 99.88 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.88 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 99.88 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.88 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 99.88 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 99.88 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.88 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.88 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.88 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 99.88 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.88 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 99.87 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 99.87 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 99.87 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 99.87 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 99.87 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 99.87 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 99.87 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.87 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 99.87 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 99.87 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 99.87 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.87 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 99.87 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 99.87 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.87 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 99.87 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 99.87 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 99.87 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 99.87 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 99.87 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 99.87 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.87 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 99.87 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.87 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 99.87 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 99.87 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 99.87 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.87 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 99.87 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 99.87 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.87 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 99.87 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 99.87 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 99.87 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 99.87 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 99.87 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 99.87 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 99.87 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 99.87 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 99.87 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 99.86 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 99.86 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 99.86 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 99.86 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 99.86 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 99.86 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 99.86 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 99.86 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 99.86 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 99.86 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 99.86 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 99.86 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 99.86 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.86 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 99.86 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 99.86 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.86 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 99.86 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 99.86 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.86 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 99.86 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 99.86 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 99.86 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 99.86 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 99.86 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 99.86 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.86 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.86 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 99.86 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 99.86 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.86 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 99.86 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 99.85 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 99.85 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.85 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 99.85 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.85 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.85 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 99.85 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 99.85 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 99.85 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 99.85 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 99.85 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 99.85 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.85 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 99.85 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 99.85 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 99.85 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 99.85 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 99.85 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 99.85 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 99.85 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 99.85 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 99.85 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 99.85 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 99.85 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 99.85 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 99.85 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 99.85 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 99.85 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 99.85 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 99.85 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 99.85 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 99.84 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 99.84 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 99.84 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 99.84 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 99.84 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 99.84 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 99.84 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 99.84 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 99.84 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 99.84 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 99.84 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 99.84 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 99.84 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 99.84 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 99.84 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 99.84 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 99.84 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 99.84 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 99.84 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 99.84 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 99.84 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 99.84 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 99.84 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 99.83 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 99.83 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.83 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 99.83 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 99.83 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 99.83 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 99.83 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 99.83 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 99.83 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 99.83 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 99.83 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 99.83 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 99.82 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 99.82 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 99.82 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 99.82 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 99.82 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 99.82 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 99.82 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 99.82 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 99.81 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 99.81 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 99.81 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 99.81 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 99.81 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 99.8 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 99.8 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 99.8 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 99.8 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 99.8 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 99.8 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 99.8 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 99.8 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 99.8 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 99.8 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 99.8 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 99.8 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 99.8 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 99.8 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 99.8 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 99.79 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 99.79 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 99.79 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 99.79 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 99.79 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 99.79 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 99.79 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 99.79 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 99.79 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 99.79 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 99.79 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 99.79 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 99.79 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 99.79 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 99.79 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.78 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 99.78 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 99.78 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 99.78 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 99.78 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 99.78 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 99.77 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 99.77 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 99.77 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 99.77 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 99.77 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 99.77 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 99.77 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 99.77 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 99.77 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 99.77 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 99.77 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 99.77 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 99.76 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 99.76 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 99.76 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 99.76 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 99.76 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 99.76 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 99.76 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 99.76 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.75 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 99.75 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 99.75 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 99.75 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 99.75 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.75 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 99.75 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 99.75 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 99.75 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 99.75 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 99.74 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.74 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 99.74 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 99.74 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 99.74 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 99.74 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 99.74 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 99.74 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 99.74 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 99.74 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 99.74 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 99.74 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 99.74 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 99.74 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 99.74 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 99.74 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 99.73 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.73 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 99.73 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 99.73 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 99.73 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 99.73 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 99.73 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.73 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 99.73 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 99.73 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 99.73 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 99.73 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.73 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 99.73 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 99.73 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 99.73 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.72 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 99.72 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.72 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 99.72 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 99.72 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.72 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 99.72 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 99.72 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 99.72 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 99.72 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 99.72 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 99.72 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 99.72 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 99.71 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 99.71 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 99.71 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 99.71 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 99.71 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 99.71 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 99.71 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 99.71 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 99.71 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 99.71 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.71 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.71 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 99.71 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 99.71 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 99.71 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 99.71 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.7 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.7 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 99.7 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.7 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 99.7 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 99.7 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.7 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 99.7 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 99.7 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.7 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 99.7 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 99.7 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 99.7 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 99.7 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 99.7 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 99.7 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 99.7 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 99.7 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 99.7 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 99.7 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 99.7 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.7 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 99.7 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 99.69 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.69 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 99.69 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.69 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.69 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 99.69 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 99.69 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.69 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 99.69 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 99.69 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 99.69 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 99.69 |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-107 Score=918.86 Aligned_cols=625 Identities=46% Similarity=0.678 Sum_probs=520.5
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------------------------------------
Q 047286 1 MAACLPAIVIAGGITATVVAKLSCRGQIAYAEAEMLLSTQLEP------------------------------------- 43 (632)
Q Consensus 1 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~------------------------------------- 43 (632)
++.+.|++++....+++.+.+.+.+++++++++.++++|++.+
T Consensus 177 ~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~gi~~g~~~G~ 256 (1228)
T KOG0055|consen 177 MLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGIKKGLFKGL 256 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999999999921
Q ss_pred ------------------------------------------CCcccHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 047286 44 ------------------------------------------LEDMPLGQTSLNVNAFAAGQAAACKMFETIERIPKINP 81 (632)
Q Consensus 44 ------------------------------------------~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~ 81 (632)
.+.+.+|+..|++..+.+|++|+.+|++++|+.|++++
T Consensus 257 ~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~ 336 (1228)
T KOG0055|consen 257 GLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETIDRKPSIDP 336 (1228)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHhcCCCCCCc
Confidence 45678999999999999999999999999999887654
Q ss_pred CCC-------------------------------cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHH-------
Q 047286 82 YDN-------------------------------RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEA------- 123 (632)
Q Consensus 82 ~~~-------------------------------~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~------- 123 (632)
... .+||+|++|+++||||||||||||++++|. |+|+|..
T Consensus 337 ~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~--RfydP~~G~V~idG 414 (1228)
T KOG0055|consen 337 YSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLA--RFYDPTSGEVLIDG 414 (1228)
T ss_pred ccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHH--HhcCCCCceEEEcC
Confidence 321 199999999999999999999999999999 8888754
Q ss_pred ----------hhcceEEEcccCcccccccccccccccCCCCCCHHHHHHHHHHccchhhHhhCCccccccc---------
Q 047286 124 ----------EQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV--------- 184 (632)
Q Consensus 124 ----------~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~~~v--------- 184 (632)
+|.+||.|+|+|.+|..++.+ ||.+|+++++.+++.++++.+++++++.++|.|++|.+
T Consensus 415 ~di~~~~~~~lr~~iglV~QePvlF~~tI~e--NI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSG 492 (1228)
T KOG0055|consen 415 EDIRNLNLKWLRSQIGLVSQEPVLFATTIRE--NIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSG 492 (1228)
T ss_pred ccchhcchHHHHhhcCeeeechhhhcccHHH--HHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCCh
Confidence 689999999999999999998 89999999999999999999999999999999999888
Q ss_pred -----------------------ccCCCCHHHHHHHHHHHHHHhCCceEEEEecCchHHhhcCeEEEEeCCeEEEecChh
Q 047286 185 -----------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHD 241 (632)
Q Consensus 185 -----------------------~ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~ 241 (632)
+|||||+++++.++++|.+..+|+|+|+|+|+++++++||+|++|++|+|+|.|+|+
T Consensus 493 GQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G~h~ 572 (1228)
T KOG0055|consen 493 GQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQGTHD 572 (1228)
T ss_pred HHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEEecCHH
Confidence 399999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCcHHHHHHHHHhhhhhhhc---ccc---cccccccCCCCCCCccccccc--c-cccccC---CchhHhhhhhHH
Q 047286 242 ELIEDPEGAYSQLVRLQEGAKEAQD---KSL---GVKHILRGFPGPIGVYETAER--S-EDRIEK---DPTEIEKRKKVS 309 (632)
Q Consensus 242 el~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~---~~~~~~~~~~~~ 309 (632)
||+..+ +.|.++++.|........ +.. ....+.+.........+.... . ....+. +....+.....+
T Consensus 573 ELi~~~-G~Y~~lv~~Q~~~~~~~~~~~~~~~~~~~~~s~~~s~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~s 651 (1228)
T KOG0055|consen 573 ELIALG-GIYSSLVRLQELEKAAEDEEEEESLKEERSRSLKSSSSSPSLSRGSNRSNLLSVKPEGEDPEEPVSEEDEKVS 651 (1228)
T ss_pred HHHhcc-chHHHHHHHHhhhhhhhccccccchhhhhhhccccccccccccCCcccccccccccccccccccccccccccc
Confidence 999985 999999998865443221 000 000000000000000000000 0 000000 000011124567
Q ss_pred HHHHHhhccchhHHHHHHHHHHHH---HHHHHHHHhhhhcc---------------------------------------
Q 047286 310 VTRLAYANRSEVPILLIGSIAAVI---VFPIFGLLLSTSIN--------------------------------------- 347 (632)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~i---~~p~~~~~~~~~~~--------------------------------------- 347 (632)
+++++.+++|+|+++++|++++++ .+|+|++.++.++.
T Consensus 652 ~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~~~~q~~~f 731 (1228)
T KOG0055|consen 652 FWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGITNFLQHYFF 731 (1228)
T ss_pred HHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999877 66776655443221
Q ss_pred --------------------------------hhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 047286 348 --------------------------------IGAVGARLSTDASAVRSVVGDALGLIIQNIATIAAGLVIAFTA-WKLA 394 (632)
Q Consensus 348 --------------------------------~G~l~srls~D~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~l~ 394 (632)
.|+|.+|+++|+..++..+++.+..+++++..++++++++|+. |+|+
T Consensus 732 ~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~nsg~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~W~la 811 (1228)
T KOG0055|consen 732 GIAGEKLTKRLRSMMFRALLRQEVGWFDDPENSGALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYGWRLA 811 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcccCCCccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1999999999999999999999999999999999999999988 9999
Q ss_pred HHHHHHHHHHHHHHHHHhH----------HHHHHH---------------------------------------------
Q 047286 395 FITLAVPSLTIAEGYLKKK----------KNYERL--------------------------------------------- 419 (632)
Q Consensus 395 lv~l~~~~l~~~~~~~~~~----------~~~~~~--------------------------------------------- 419 (632)
++++++.|++....+...+ +.+.++
T Consensus 812 lv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~~~~i~ 891 (1228)
T KOG0055|consen 812 LVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFKRGLIS 891 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999887765433 000000
Q ss_pred ------------HHHHHHHhhhhHHhhcCCcCHHHHHHHH--HHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHccCCCC
Q 047286 420 ------------HINAFCFFIGSKLVEHGDATFGEVFKFL--SEFGCFWCLESTAVAPNADKAKGSAASIFEILESKPKI 485 (632)
Q Consensus 420 ------------~~~~~~~~~g~~~v~~g~~s~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~ 485 (632)
..+++.+|+|++++.+|.+++.+++..+ ..+....+.+..++.|++.++..|+.++|+++|.+|+.
T Consensus 892 gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~~i 971 (1228)
T KOG0055|consen 892 GLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEILDRKPTI 971 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhcCCCCC
Confidence 3466789999999999999999999877 34455568888999999999999999999999999987
Q ss_pred CCCCCCCCCCCcccccEEEee-------------------------EEEEEecCCCChHHHHHhhhcCCChhh-------
Q 047286 486 DWSSKDGMTPSTVRGDIVFEH-------------------------TVALVGENGNGKSTVISLAERFHNPEQ------- 533 (632)
Q Consensus 486 ~~~~~~~~~~~~~~g~I~f~~-------------------------~vaIVG~SGsGKSTL~~ll~r~y~~~~------- 533 (632)
+.+++.+..++..+|+|+|+| ++||||||||||||++.||+|||||++
T Consensus 972 ~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg 1051 (1228)
T KOG0055|consen 972 DPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDG 1051 (1228)
T ss_pred CCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECC
Confidence 765434444567889999988 799999999999999999999999943
Q ss_pred --------------------------------------------hcHHHHHHHHHHHHhcCCCccCcccccCCCCCChHH
Q 047286 534 --------------------------------------------VIYSWIIIKCTNFIASLPQGSDLNVGERGLQLSGGL 569 (632)
Q Consensus 534 --------------------------------------------~~~~~~~~~~~~~i~~lp~g~dt~vge~G~~LSgGQ 569 (632)
+..+....|+|+||.+||+||||.|||+|.+|||||
T Consensus 1052 ~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQ 1131 (1228)
T KOG0055|consen 1052 VDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQ 1131 (1228)
T ss_pred cccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchH
Confidence 122223458999999999999999999999999999
Q ss_pred HHHHHHHHHHhh-----------------------------------hccccchhhhhcCCEEEEEeCCeEeeecChHHH
Q 047286 570 KQRIARTRARNY-----------------------------------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDAL 614 (632)
Q Consensus 570 rQRiaiARA~~~-----------------------------------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL 614 (632)
|||||||||++| |+|||||+||+|||.|+|+++|+|+|+|||+||
T Consensus 1132 KQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~GtH~~L 1211 (1228)
T KOG0055|consen 1132 KQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQGTHDEL 1211 (1228)
T ss_pred HHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEEecccHHHH
Confidence 999999999887 899999999999999999999999999999999
Q ss_pred hccCCchhHHHHHhhhc
Q 047286 615 MKITDGTYASLTALHMS 631 (632)
Q Consensus 615 ~~~~~g~y~~l~~~~~~ 631 (632)
+++ +|.|++|+..|..
T Consensus 1212 ~~~-~G~Y~~Lv~~q~~ 1227 (1228)
T KOG0055|consen 1212 LAK-RGIYFRLVQLQSS 1227 (1228)
T ss_pred HhC-CCchHHHhhhccC
Confidence 996 9999999998864
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-79 Score=734.58 Aligned_cols=627 Identities=25% Similarity=0.361 Sum_probs=441.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------------------------------------
Q 047286 2 AACLPAIVIAGGITATVVAKLSCRGQIAYAEAEMLLSTQLEP-------------------------------------- 43 (632)
Q Consensus 2 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-------------------------------------- 43 (632)
++++|+++++..++.+++++..+..++..++++++++|++.|
T Consensus 204 l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~~ 283 (1466)
T PTZ00265 204 TCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLH 283 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999999999943
Q ss_pred ------------------------CC--------cccHH-----------------HHHHHHHHHHHHHHHHHHHHHHhc
Q 047286 44 ------------------------LE--------DMPLG-----------------QTSLNVNAFAAGQAAACKMFETIE 74 (632)
Q Consensus 44 ------------------------~~--------~~~~~-----------------~~~~~~~~~~~~~~a~~ri~~~~~ 74 (632)
.+ .++.| .+.+.+..++++++|++|++++++
T Consensus 284 ~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~ 363 (1466)
T PTZ00265 284 IGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIIN 363 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 11 12222 223456789999999999999999
Q ss_pred cCCCCCC---------------------CC--------CcEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCC-------
Q 047286 75 RIPKINP---------------------YD--------NRFLQHVPSGTTVALVGQSGSGKSTVINLVESFRF------- 118 (632)
Q Consensus 75 ~~~~~~~---------------------~~--------~~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~------- 118 (632)
.+++++. +. ..+||+|++||++||+||||||||||+++|.++-.
T Consensus 364 ~~~~~~~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~ 443 (1466)
T PTZ00265 364 RKPLVENNDDGKKLKDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDII 443 (1466)
T ss_pred CCCCCCCCCCCccCCCCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEE
Confidence 8664321 00 01899999999999999999999999999985411
Q ss_pred ---------CCcHHhhcceEEEcccCcccccccccccccccCCC------------------------------------
Q 047286 119 ---------YAPEAEQEKIGLVSKEPIFLFCDFNEGQYIPYGKQ------------------------------------ 153 (632)
Q Consensus 119 ---------~~~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~------------------------------------ 153 (632)
.+...+|++|+||+|+|.+|..++.+ |+.++..
T Consensus 444 i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~e--NI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (1466)
T PTZ00265 444 INDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKN--NIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGD 521 (1466)
T ss_pred EeCCcchhhCCHHHHHHhccEecccccchhccHHH--HHHhcCCCccccchhccccccccccccccccccccccccccch
Confidence 01223678899999999999988877 6766521
Q ss_pred ---------------------CCCHHHHHHHHHHccchhhHhhCCccccccc----------------------------
Q 047286 154 ---------------------NASDEHIRPAVQLANAEKSIDKLPLGLDTVV---------------------------- 184 (632)
Q Consensus 154 ---------------------~~~~~~~~~~~~~~~l~~~i~~l~~g~~~~v---------------------------- 184 (632)
+.+++++.++++.+++++++..+|.|++|.+
T Consensus 522 ~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~IL 601 (1466)
T PTZ00265 522 LNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKIL 601 (1466)
T ss_pred hhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 2356788999999999999999999988776
Q ss_pred ----ccCCCCHHHHHHHHHHHHHHh--CCceEEEEecCchHHhhcCeEEEEeCC--------------------------
Q 047286 185 ----ATNAVDAQSERIVQAAMVKLV--TNQTVVIVANCLITIRNADCIIMVSKG-------------------------- 232 (632)
Q Consensus 185 ----~ts~LD~~~~~~i~~~l~~~~--~~~tviiitH~~~~~~~aD~i~vl~~G-------------------------- 232 (632)
+|++||+.+++.+++.|+++. +++|+|+|||+++.++.||+|++|++|
T Consensus 602 lLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~~~~~~~~~~ 681 (1466)
T PTZ00265 602 ILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDNKENNNKN 681 (1466)
T ss_pred EEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCcccccccccccccccccccccccccc
Confidence 399999999999999999986 479999999999999999999999986
Q ss_pred ---------------------eEEEecChhHHhcCCCcHHHHHHHHHhhhhhhhc----cc-c----cc-cccccCC---
Q 047286 233 ---------------------KIVEKGTHDELIEDPEGAYSQLVRLQEGAKEAQD----KS-L----GV-KHILRGF--- 278 (632)
Q Consensus 233 ---------------------~i~~~g~~~el~~~~~~~~~~~~~~~~~~~~~~~----~~-~----~~-~~~~~~~--- 278 (632)
+|+|+|+|+||+...++.|..+.+.|........ .. . .. .......
T Consensus 682 ~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 761 (1466)
T PTZ00265 682 NKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQKVSSKKSSNNDNDKDSDMKSSAYKDSERGYDPD 761 (1466)
T ss_pred ccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhccccccccccccccccccccccccccccccccc
Confidence 5999999999997558899998877643211110 00 0 00 0000000
Q ss_pred --CCC--CCccccc-cccccc--cc-CCchh---H---h------hhhhHHHHHHHhhccchhHHHHHHHHHHHH---HH
Q 047286 279 --PGP--IGVYETA-ERSEDR--IE-KDPTE---I---E------KRKKVSVTRLAYANRSEVPILLIGSIAAVI---VF 335 (632)
Q Consensus 279 --~~~--~~~~~~~-~~~~~~--~~-~~~~~---~---~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i---~~ 335 (632)
... ....... ...... .. .+... . + ......+.+++.+.+++++.++++++++++ ++
T Consensus 762 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 841 (1466)
T PTZ00265 762 EMNGNSKHENESASNKKSCKMSDENASENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSYKKDVTIIALSILVAGGLY 841 (1466)
T ss_pred cccccccccccccccccccccccccccchhccccchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0000000 000000 00 00000 0 0 000012233333333333333333333221 12
Q ss_pred HHHHHHhhhh----------------------------------------------------------------------
Q 047286 336 PIFGLLLSTS---------------------------------------------------------------------- 345 (632)
Q Consensus 336 p~~~~~~~~~---------------------------------------------------------------------- 345 (632)
|+++++++..
T Consensus 842 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~ 921 (1466)
T PTZ00265 842 PVFALLYAKYVSTLFDFANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFENILYQEISFFDQDK 921 (1466)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCC
Confidence 2111111000
Q ss_pred cchhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhH-----H---H-
Q 047286 346 INIGAVGARLSTDASAVRSVVGDALGLIIQNIATIAAGLVIAFTA-WKLAFITLAVPSLTIAEGYLKKK-----K---N- 415 (632)
Q Consensus 346 ~~~G~l~srls~D~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~l~lv~l~~~~l~~~~~~~~~~-----~---~- 415 (632)
...|++++|+++|++.++..+...+..++..++.++++++++++. |.++++++++++++......+.+ + .
T Consensus 922 ~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1001 (1466)
T PTZ00265 922 HAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVFAIRARLTANKDVEKKE 1001 (1466)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 113999999999999999999999999999999998888888877 99888776655554332211000 0 0
Q ss_pred ----------------HHHH---------------------------------------------------------HHH
Q 047286 416 ----------------YERL---------------------------------------------------------HIN 422 (632)
Q Consensus 416 ----------------~~~~---------------------------------------------------------~~~ 422 (632)
..+. ...
T Consensus 1002 ~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1081 (1466)
T PTZ00265 1002 INQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFIN 1081 (1466)
T ss_pred ccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 123
Q ss_pred HHHHhhhhHHhhcCCcCHHHHHHHHHHHHH--HHHHHHHhHHhHHHHHHHHHHHHHHHHccCCCCCCCCCCCCC---CCc
Q 047286 423 AFCFFIGSKLVEHGDATFGEVFKFLSEFGC--FWCLESTAVAPNADKAKGSAASIFEILESKPKIDWSSKDGMT---PST 497 (632)
Q Consensus 423 ~~~~~~g~~~v~~g~~s~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~---~~~ 497 (632)
++++|+|++++..|.+++|++++++..+.. ..+..+....+.++++..+++|++++++.+++.+..+.+... ++.
T Consensus 1082 ~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~ 1161 (1466)
T PTZ00265 1082 SFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKND 1161 (1466)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCC
Confidence 467899999999999999999987733321 235567778889999999999999999887644221111111 112
Q ss_pred ccccEEEee-------------------------EEEEEecCCCChHHHHHhhhcCCChh--------------------
Q 047286 498 VRGDIVFEH-------------------------TVALVGENGNGKSTVISLAERFHNPE-------------------- 532 (632)
Q Consensus 498 ~~g~I~f~~-------------------------~vaIVG~SGsGKSTL~~ll~r~y~~~-------------------- 532 (632)
..|.|+|+| ++|||||||||||||++||+|||+|+
T Consensus 1162 ~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~ 1241 (1466)
T PTZ00265 1162 IKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQD 1241 (1466)
T ss_pred CCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccc
Confidence 335555554 79999999999999999999999982
Q ss_pred ----------------------------------h------------hcHH-----------------------------
Q 047286 533 ----------------------------------Q------------VIYS----------------------------- 537 (632)
Q Consensus 533 ----------------------------------~------------~~~~----------------------------- 537 (632)
+ ++..
T Consensus 1242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~ 1321 (1466)
T PTZ00265 1242 YQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKE 1321 (1466)
T ss_pred cccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCC
Confidence 1 1111
Q ss_pred ----------HHHHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh--------------------------
Q 047286 538 ----------WIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY-------------------------- 581 (632)
Q Consensus 538 ----------~~~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~-------------------------- 581 (632)
....+++|||.+||+||||.|||+|.+||||||||||||||+++
T Consensus 1322 ~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L 1401 (1466)
T PTZ00265 1322 DATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTI 1401 (1466)
T ss_pred CCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHH
Confidence 11237789999999999999999999999999999999999766
Q ss_pred -----------hccccchhhhhcCCEEEEEeC----CeEe-eecChHHHhccCCchhHHHHHhhh
Q 047286 582 -----------CGCGSPPYHYKNADITSVVKN----GVIA-EKGRHDALMKITDGTYASLTALHM 630 (632)
Q Consensus 582 -----------~~iahrl~~~~~aD~I~vl~~----G~iv-e~G~h~eL~~~~~g~y~~l~~~~~ 630 (632)
|+||||++++++||+|+||++ |+++ |+|||+||+++++|.|++|++.|.
T Consensus 1402 ~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~~~g~Y~~l~~~~~ 1466 (1466)
T PTZ00265 1402 VDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKKYVKLAK 1466 (1466)
T ss_pred HHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHhcCCChHHHHHhhcC
Confidence 789999999999999999999 9955 899999999833899999998763
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-74 Score=704.31 Aligned_cols=611 Identities=17% Similarity=0.207 Sum_probs=401.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------------------------------------------
Q 047286 11 AGGITATVVAKLSCRGQIAYAEAEMLLSTQLEP----------------------------------------------- 43 (632)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~----------------------------------------------- 43 (632)
+..++.+++.+..++.++..++..+.+.|.+.|
T Consensus 456 l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~ 535 (1622)
T PLN03130 456 IQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILNSIPV 535 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567778888888888889999999999943
Q ss_pred -------------CCcccHHHH-----------------HHHHHHHHHHHHHHHHHHHHhccCCCC-------C------
Q 047286 44 -------------LEDMPLGQT-----------------SLNVNAFAAGQAAACKMFETIERIPKI-------N------ 80 (632)
Q Consensus 44 -------------~~~~~~~~~-----------------~~~~~~~~~~~~a~~ri~~~~~~~~~~-------~------ 80 (632)
.+.++.|.+ ...+..+.+++++++||.++++.++.. .
T Consensus 536 ~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~~~~~~~~~~~I 615 (1622)
T PLN03130 536 LVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLLPNPPLEPGLPAI 615 (1622)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCcccCCCCce
Confidence 122333322 233667899999999999999643210 0
Q ss_pred ---------CC--C----CcEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHH-----hhcceEEEcccCccccc
Q 047286 81 ---------PY--D----NRFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEA-----EQEKIGLVSKEPIFLFC 140 (632)
Q Consensus 81 ---------~~--~----~~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~-----~r~~i~~v~Q~~~~~~~ 140 (632)
+. . .++||++++|++++|+||||||||||+++|. +.+++.+ ++++++||+|+||+|++
T Consensus 616 ~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLl--G~~~~~~GG~I~l~~~Iayv~Q~p~Lfng 693 (1622)
T PLN03130 616 SIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAML--GELPPRSDASVVIRGTVAYVPQVSWIFNA 693 (1622)
T ss_pred EEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHH--HhhccCCCceEEEcCeEEEEcCccccCCC
Confidence 00 0 1299999999999999999999999999998 4455544 67899999999999999
Q ss_pred ccccccccccCCCCCCHHHHHHHHHHccchhhHhhCCcccccccc--------------------------------cCC
Q 047286 141 DFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVVA--------------------------------TNA 188 (632)
Q Consensus 141 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~~~v~--------------------------------ts~ 188 (632)
|+++ ||.++.+ .++++++++++.|++++++..+|+|++|.++ ||+
T Consensus 694 TIre--NI~fg~~-~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSA 770 (1622)
T PLN03130 694 TVRD--NILFGSP-FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSA 770 (1622)
T ss_pred CHHH--HHhCCCc-ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccc
Confidence 9999 7999975 5789999999999999999999999999883 899
Q ss_pred CCHHHHHHHH-HHHHHHhCCceEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHhcCCCcHHHHHHHHHhhhhhhhcc
Q 047286 189 VDAQSERIVQ-AAMVKLVTNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQEGAKEAQDK 267 (632)
Q Consensus 189 LD~~~~~~i~-~~l~~~~~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~~~~~~~~~~~~ 267 (632)
||+++++.+. ++++...+++|+|+|||+++.++.||+|++|++|+|+++|+++++.+. ++.|..+...+....+....
T Consensus 771 LD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~~-~~~~~~l~~~~~~~~~~~~~ 849 (1622)
T PLN03130 771 LDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNN-GPLFQKLMENAGKMEEYVEE 849 (1622)
T ss_pred cCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHhc-chhHHHHHHhcccccccccc
Confidence 9999998765 567777788999999999999999999999999999999999999865 56677766543211110000
Q ss_pred cccc--c-ccccCCCC-CCCccccccc-c-ccc-ccCCchhHhhhhhH--HHHHHHhhccchh--HHHHHHHHHHHH---
Q 047286 268 SLGV--K-HILRGFPG-PIGVYETAER-S-EDR-IEKDPTEIEKRKKV--SVTRLAYANRSEV--PILLIGSIAAVI--- 333 (632)
Q Consensus 268 ~~~~--~-~~~~~~~~-~~~~~~~~~~-~-~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~i--- 333 (632)
.... . ........ .......... . .+. ......+.+++..+ ++..+.+|.+... +++.+.+++.++
T Consensus 850 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~ 929 (1622)
T PLN03130 850 NGEEEDDQTSSKPVANGNANNLKKDSSSKKKSKEGKSVLIKQEERETGVVSWKVLERYKNALGGAWVVMILFLCYVLTEV 929 (1622)
T ss_pred cccccccccccccccccccccccccccccccccccchhhhhHHHHhcCccCHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 0000 0 00000000 0000000000 0 000 00001112222222 3333433332211 111111111000
Q ss_pred ---HHHH----------------------HH--------------HHhh--------------------------hhcch
Q 047286 334 ---VFPI----------------------FG--------------LLLS--------------------------TSINI 348 (632)
Q Consensus 334 ---~~p~----------------------~~--------------~~~~--------------------------~~~~~ 348 (632)
..++ +. +++. ...+.
T Consensus 930 ~~~~~~~wl~~w~~~~~~~~~~~~~~~~i~~~l~~~~~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~ 1009 (1622)
T PLN03130 930 FRVSSSTWLSEWTDQGTPKTHGPLFYNLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPL 1009 (1622)
T ss_pred HHHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhccCCc
Confidence 0000 00 0000 00123
Q ss_pred hhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH---HHHHHHhHHHHHHH-----
Q 047286 349 GAVGARLSTDASAVRSVVGDALGLIIQNIATIAAGLVIAFTA-WKLAFITLAVPSLTI---AEGYLKKKKNYERL----- 419 (632)
Q Consensus 349 G~l~srls~D~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~l~lv~l~~~~l~~---~~~~~~~~~~~~~~----- 419 (632)
|++++|+++|++.++..++..+..++..++.+++.++++++. | +.++.+..+++++ ...|.+..+..++.
T Consensus 1010 G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~~~-~~~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~ 1088 (1622)
T PLN03130 1010 GRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVST-ISLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITR 1088 (1622)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999888888777766554 4 2222221122111 11121111000000
Q ss_pred --------------------------------------------------------HHHHHHHhhh-hHHhhcCC-----
Q 047286 420 --------------------------------------------------------HINAFCFFIG-SKLVEHGD----- 437 (632)
Q Consensus 420 --------------------------------------------------------~~~~~~~~~g-~~~v~~g~----- 437 (632)
...+++++++ ...+..+.
T Consensus 1089 s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~i~~~~~~~v~~~~~~~~~ 1168 (1622)
T PLN03130 1089 SPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMSSNRWLAIRLETLGGLMIWLTASFAVMQNGRAENQ 1168 (1622)
T ss_pred chHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
Confidence 0001111222 22233221
Q ss_pred ----cCHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCC--cccccEEEee-----
Q 047286 438 ----ATFGEVFKFLSEFGCFWCLESTAVAPNADKAKGSAASIFEILESKPKIDWSSKDGMTPS--TVRGDIVFEH----- 506 (632)
Q Consensus 438 ----~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~--~~~g~I~f~~----- 506 (632)
.++|.++.+..... ..+..........+..+.+++|+.++++.++|.++...+..+++ +.+|.|+|+|
T Consensus 1169 ~~~~~~~G~~ls~~~~~~-~~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y 1247 (1622)
T PLN03130 1169 AAFASTMGLLLSYALNIT-SLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRY 1247 (1622)
T ss_pred hhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEe
Confidence 23343443321111 11222333444667889999999999988776532111111111 2346677665
Q ss_pred -------------------EEEEEecCCCChHHHHHhhhcCCChhh----------------------------------
Q 047286 507 -------------------TVALVGENGNGKSTVISLAERFHNPEQ---------------------------------- 533 (632)
Q Consensus 507 -------------------~vaIVG~SGsGKSTL~~ll~r~y~~~~---------------------------------- 533 (632)
+||||||||||||||+++|+|+|+|++
T Consensus 1248 ~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~G 1327 (1622)
T PLN03130 1248 RPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSG 1327 (1622)
T ss_pred CCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccc
Confidence 799999999999999999999999843
Q ss_pred ----------------hcHHHHHHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh----------------
Q 047286 534 ----------------VIYSWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY---------------- 581 (632)
Q Consensus 534 ----------------~~~~~~~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~---------------- 581 (632)
+|.+....++++||.++|+||||.|||+|.+||||||||||||||+++
T Consensus 1328 TIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~ 1407 (1622)
T PLN03130 1328 TVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDV 1407 (1622)
T ss_pred cHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCH
Confidence 222333447889999999999999999999999999999999999877
Q ss_pred -------------------hccccchhhhhcCCEEEEEeCCeEeeecChHHHhccCCchhHHHHHhh
Q 047286 582 -------------------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKITDGTYASLTALH 629 (632)
Q Consensus 582 -------------------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~~~~ 629 (632)
|+||||++|+++||+|+||++|+|+|.|+|+||+++++|.|++|++.+
T Consensus 1408 ~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~~~~g~f~~L~~~~ 1474 (1622)
T PLN03130 1408 RTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQST 1474 (1622)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCCHHHHHHHHc
Confidence 799999999999999999999999999999999986569999999764
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-74 Score=667.94 Aligned_cols=567 Identities=21% Similarity=0.265 Sum_probs=382.9
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCC---------CC----------------C-----CcEEEEeeCCCEEEEEcCCCc
Q 047286 55 NVNAFAAGQAAACKMFETIERIPKIN---------PY----------------D-----NRFLQHVPSGTTVALVGQSGS 104 (632)
Q Consensus 55 ~~~~~~~~~~a~~ri~~~~~~~~~~~---------~~----------------~-----~~~~~~i~~Ge~~~ivG~sGs 104 (632)
.+..+.++.++.+|+.+++..+.... +. + +++||+|++|+.+|||||.||
T Consensus 479 ~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGs 558 (1381)
T KOG0054|consen 479 VISQLVQAKVSLKRLKEFLLSEELDPDSVERSPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGS 558 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccCccccccCCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCC
Confidence 46678899999999999996543110 00 0 129999999999999999999
Q ss_pred hHHHHHHHHHhCCCC--CcHHhhcceEEEcccCcccccccccccccccCCCCCCHHHHHHHHHHccchhhHhhCCccccc
Q 047286 105 GKSTVINLVESFRFY--APEAEQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDT 182 (632)
Q Consensus 105 GKSTLl~ll~~~~~~--~~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~~ 182 (632)
|||+|+..|.|-... +....++.++||||+||++++|+++ ||.||.+ .++++++++++.|+++++++.||.|+.|
T Consensus 559 GKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI~ngTvre--NILFG~~-~d~~rY~~Vi~aC~L~~Dle~Lp~GD~T 635 (1381)
T KOG0054|consen 559 GKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQNGTVRE--NILFGSP-YDEERYDKVIKACALKKDLEILPFGDLT 635 (1381)
T ss_pred CHHHHHHHHhcCcccccceEEEcCeEEEeccccHhhCCcHHH--hhhcCcc-ccHHHHHHHHHHccCHhHHhhcCCCCcc
Confidence 999999999753222 1223567899999999999999999 8999965 7899999999999999999999999999
Q ss_pred ccc--------------------------------cCCCCHHHHHH-HHHHHHHHhCCceEEEEecCchHHhhcCeEEEE
Q 047286 183 VVA--------------------------------TNAVDAQSERI-VQAAMVKLVTNQTVVIVANCLITIRNADCIIMV 229 (632)
Q Consensus 183 ~v~--------------------------------ts~LD~~~~~~-i~~~l~~~~~~~tviiitH~~~~~~~aD~i~vl 229 (632)
.|+ .||+|.++.++ +.++|+.+.++||+|+|||.++.+++||.|++|
T Consensus 636 eIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl 715 (1381)
T KOG0054|consen 636 EIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVL 715 (1381)
T ss_pred eecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEe
Confidence 884 78999997765 567887778899999999999999999999999
Q ss_pred eCCeEEEecChhHHhcCCCcHHHHHHHHHhhhhhhhccccccc--ccccCCCC-CCCccc-cccc-ccccc-cCCchhHh
Q 047286 230 SKGKIVEKGTHDELIEDPEGAYSQLVRLQEGAKEAQDKSLGVK--HILRGFPG-PIGVYE-TAER-SEDRI-EKDPTEIE 303 (632)
Q Consensus 230 ~~G~i~~~g~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~-~~~~-~~~~~-~~~~~~~~ 303 (632)
++|+|.+.|+++|+.+. ...+.++......+.+......... ...+.... ...... ..+. .+... +++....+
T Consensus 716 ~~G~I~~~Gty~el~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 794 (1381)
T KOG0054|consen 716 KDGKIVESGTYEELLKS-GGDFAELAHEEESEQEEEASEKDLESGESSRESESRSLESLSSEEEKSKDEKEEEDKLVQEE 794 (1381)
T ss_pred cCCeEecccCHHHHHhc-chhHHHHhhccchhhccccccccccccccccchhhhhhhhhcccccccccccchhhHHHHHH
Confidence 99999999999999865 5666666322221111110000000 00000000 000000 0000 00000 01111222
Q ss_pred hhhhH--HHHHHHhhccchhHHHHHHH-HHHH-----------------------------------------------H
Q 047286 304 KRKKV--SVTRLAYANRSEVPILLIGS-IAAV-----------------------------------------------I 333 (632)
Q Consensus 304 ~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~-----------------------------------------------i 333 (632)
++..+ ++..|..|.+....++...+ ++.. +
T Consensus 795 e~~~G~v~~~vY~~Y~~a~~g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~~~~~~~~~~~~~~~~~~vY~~l~~~~~~~ 874 (1381)
T KOG0054|consen 795 ERETGKVSWSVYKKYIKAAGGFLLVLLILLLFVLTQVLQIASNYWLSYWTDDGEDNGTTTVSTSFYLGVYALLGVASSLL 874 (1381)
T ss_pred HHhcCEeeHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCcchHHHHHHHHHHHHHHH
Confidence 23333 23333333322111111000 0000 0
Q ss_pred -H---HHH--HHHHhh-------------------hhcchhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047286 334 -V---FPI--FGLLLS-------------------TSINIGAVGARLSTDASAVRSVVGDALGLIIQNIATIAAGLVIAF 388 (632)
Q Consensus 334 -~---~p~--~~~~~~-------------------~~~~~G~l~srls~D~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~ 388 (632)
+ +.+ .++-.+ ...+.|+|+|||++|++.+|..+|..+..+++.++.+++.++++.
T Consensus 875 ~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~ 954 (1381)
T KOG0054|consen 875 TLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVIS 954 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCCCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 0 000 000000 012349999999999999999999999999999999988887776
Q ss_pred HH-HHHHHHHH--HHHHHHHHHHHHHhHHHHHHH----------------------------------------------
Q 047286 389 TA-WKLAFITL--AVPSLTIAEGYLKKKKNYERL---------------------------------------------- 419 (632)
Q Consensus 389 ~~-~~l~lv~l--~~~~l~~~~~~~~~~~~~~~~---------------------------------------------- 419 (632)
+. |.+.++.+ .++.+.+..+|....+..+|+
T Consensus 955 ~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~ 1034 (1381)
T KOG0054|consen 955 YVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAF 1034 (1381)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHH
Confidence 55 44333332 333333444455554444443
Q ss_pred ----------------HHHHHHHhhhhHHhh-cCC-cCHHH-----HHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHH
Q 047286 420 ----------------HINAFCFFIGSKLVE-HGD-ATFGE-----VFKFLSEFGCFWCLESTAVAPNADKAKGSAASIF 476 (632)
Q Consensus 420 ----------------~~~~~~~~~g~~~v~-~g~-~s~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~ 476 (632)
.+..+++..+...+. .+. .+.|. .++........|..+. ..+.+..+.|+||+.
T Consensus 1035 f~~~~a~RWla~Rle~ig~~~v~~~al~~vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR~---~~elEn~m~SVERv~ 1111 (1381)
T KOG0054|consen 1035 FLSISANRWLAVRLELLGNLVVLIAALFAVLLPSGLISPGLVGLSLSYALQLTGLLQWLVRQ---SSELENNMVSVERVL 1111 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHH---HHHHHhcchhhhHHH
Confidence 000011111111111 111 22222 2222222232333333 336677789999999
Q ss_pred HHHccCCCCCCCCCCCCCCC--cccccEEEee------------------------EEEEEecCCCChHHHHHhhhcCCC
Q 047286 477 EILESKPKIDWSSKDGMTPS--TVRGDIVFEH------------------------TVALVGENGNGKSTVISLAERFHN 530 (632)
Q Consensus 477 ~~l~~~~~~~~~~~~~~~~~--~~~g~I~f~~------------------------~vaIVG~SGsGKSTL~~ll~r~y~ 530 (632)
+|.+.|+|.+|..+...+|+ |.+|+|+|+| +||||||||||||||++.|+|+.+
T Consensus 1112 eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e 1191 (1381)
T KOG0054|consen 1112 EYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVE 1191 (1381)
T ss_pred HHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcC
Confidence 99998877444432222333 3468899988 899999999999999999999977
Q ss_pred h--------------------------------------------------hhhcHHHHHHHHHHHHhcCCCccCccccc
Q 047286 531 P--------------------------------------------------EQVIYSWIIIKCTNFIASLPQGSDLNVGE 560 (632)
Q Consensus 531 ~--------------------------------------------------~~~~~~~~~~~~~~~i~~lp~g~dt~vge 560 (632)
| +++|.+....+++++|.++|+|+|+.|.|
T Consensus 1192 ~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~e 1271 (1381)
T KOG0054|consen 1192 PAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSE 1271 (1381)
T ss_pred ccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecC
Confidence 6 33777777889999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHhh-----------------------------------hccccchhhhhcCCEEEEEeCCeE
Q 047286 561 RGLQLSGGLKQRIARTRARNY-----------------------------------CGCGSPPYHYKNADITSVVKNGVI 605 (632)
Q Consensus 561 ~G~~LSgGQrQRiaiARA~~~-----------------------------------~~iahrl~~~~~aD~I~vl~~G~i 605 (632)
+|.|||.||||++|||||++| ++||||++|+.|||||+|||+|+|
T Consensus 1272 gG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v 1351 (1381)
T KOG0054|consen 1272 GGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRV 1351 (1381)
T ss_pred CCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeE
Confidence 999999999999999999888 799999999999999999999999
Q ss_pred eeecChHHHhccCCchhHHHHHh
Q 047286 606 AEKGRHDALMKITDGTYASLTAL 628 (632)
Q Consensus 606 ve~G~h~eL~~~~~g~y~~l~~~ 628 (632)
+|.|++++|++++++.|++++..
T Consensus 1352 ~EfdsP~~Ll~~~~S~f~~~l~~ 1374 (1381)
T KOG0054|consen 1352 VEFDSPAELLSDKDSLFSSLLKE 1374 (1381)
T ss_pred eecCChHHHHhCCcchHHHHHHH
Confidence 99999999998878888766543
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-73 Score=695.97 Aligned_cols=612 Identities=19% Similarity=0.208 Sum_probs=399.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------------------------------------------------
Q 047286 12 GGITATVVAKLSCRGQIAYAEAEMLLSTQLEP------------------------------------------------ 43 (632)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~------------------------------------------------ 43 (632)
..++++++.+..++.++..++..+.+.|.++|
T Consensus 457 ~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~ 536 (1495)
T PLN03232 457 QTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSIPVV 536 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45577888888899999999999999999943
Q ss_pred ------------CCcccHHHH-----------------HHHHHHHHHHHHHHHHHHHHhccCCCCC--------------
Q 047286 44 ------------LEDMPLGQT-----------------SLNVNAFAAGQAAACKMFETIERIPKIN-------------- 80 (632)
Q Consensus 44 ------------~~~~~~~~~-----------------~~~~~~~~~~~~a~~ri~~~~~~~~~~~-------------- 80 (632)
.+.++.|.+ ...+..+.++++|++|+.++++.+++..
T Consensus 537 ~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~~~~~~~~~~I~ 616 (1495)
T PLN03232 537 VTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQNPPLQPGAPAIS 616 (1495)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccCCcCCCCCcEE
Confidence 122333332 2335678999999999999997543210
Q ss_pred --------CC--C----CcEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHH-----hhcceEEEcccCcccccc
Q 047286 81 --------PY--D----NRFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEA-----EQEKIGLVSKEPIFLFCD 141 (632)
Q Consensus 81 --------~~--~----~~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~-----~r~~i~~v~Q~~~~~~~~ 141 (632)
+. + .++||+|++|+.++|+||||||||||+++|. ++++|.+ +|++++||+|+|++|++|
T Consensus 617 ~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLl--G~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gT 694 (1495)
T PLN03232 617 IKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAML--GELSHAETSSVVIRGSVAYVPQVSWIFNAT 694 (1495)
T ss_pred EEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHh--CCCcccCCCEEEecCcEEEEcCcccccccc
Confidence 00 0 1289999999999999999999999999998 5555542 578899999999999999
Q ss_pred cccccccccCCCCCCHHHHHHHHHHccchhhHhhCCcccccccc--------------------------------cCCC
Q 047286 142 FNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVVA--------------------------------TNAV 189 (632)
Q Consensus 142 ~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~~~v~--------------------------------ts~L 189 (632)
+++ ||.++.+ .++++++++++.|++++++..+|+|++|.|+ ||+|
T Consensus 695 Ire--NI~fg~~-~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaL 771 (1495)
T PLN03232 695 VRE--NILFGSD-FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSAL 771 (1495)
T ss_pred HHH--HhhcCCc-cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCcccc
Confidence 999 7999974 6889999999999999999999999999882 8999
Q ss_pred CHHHHHHHHH-HHHHHhCCceEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHhcCCCcHHHHHHHHHhhhhhhhccc
Q 047286 190 DAQSERIVQA-AMVKLVTNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQEGAKEAQDKS 268 (632)
Q Consensus 190 D~~~~~~i~~-~l~~~~~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (632)
|+++++.+.+ ++....+++|+|+|||+++.++.||+|++|++|+|+++|+++|+.+. ++.|.++...+....+.....
T Consensus 772 D~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~~-~~~~~~l~~~~~~~~~~~~~~ 850 (1495)
T PLN03232 772 DAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKS-GSLFKKLMENAGKMDATQEVN 850 (1495)
T ss_pred CHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHhc-chhHHHHHHhccccccccccc
Confidence 9999987754 56666678999999999999999999999999999999999999865 567777765443211110000
Q ss_pred ccccccccCCCCC-CCcccc-cccccccc--cCCchhHhhhh--hHHHHHHHhhccchh--HHHHHHHHHHHH-----HH
Q 047286 269 LGVKHILRGFPGP-IGVYET-AERSEDRI--EKDPTEIEKRK--KVSVTRLAYANRSEV--PILLIGSIAAVI-----VF 335 (632)
Q Consensus 269 ~~~~~~~~~~~~~-~~~~~~-~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~i-----~~ 335 (632)
....+........ ....+. .....+.. +....+.+++. ..++..+.+|.+..+ +++.+.+++.++ .+
T Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vy~~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 930 (1495)
T PLN03232 851 TNDENILKLGPTVTIDVSERNLGSTKQGKRGRSVLVKQEERETGIISWNVLMRYNKAVGGLWVVMILLVCYLTTEVLRVS 930 (1495)
T ss_pred ccccccccccccccccccccccccccccccchhhhhhHHHHhcCcccHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHH
Confidence 0000000000000 000000 00000000 00001112222 223444444443321 111111111000 00
Q ss_pred H--H-----------------H-H-----------------HHhh----------------h----------hcchhhHH
Q 047286 336 P--I-----------------F-G-----------------LLLS----------------T----------SINIGAVG 352 (632)
Q Consensus 336 p--~-----------------~-~-----------------~~~~----------------~----------~~~~G~l~ 352 (632)
+ + + . +++. . ..+.|+++
T Consensus 931 ~~~wl~~w~~~~~~~~~~~~~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~il 1010 (1495)
T PLN03232 931 SSTWLSIWTDQSTPKSYSPGFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVI 1010 (1495)
T ss_pred HHHHHHHHhcccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHH
Confidence 0 0 0 0 0000 0 01239999
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHH----------
Q 047286 353 ARLSTDASAVRSVVGDALGLIIQNIATIAAGLVIAFTAWKLAFITLAVPSLT---IAEGYLKKKKNYERL---------- 419 (632)
Q Consensus 353 srls~D~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~lv~l~~~~l~---~~~~~~~~~~~~~~~---------- 419 (632)
+|+++|++.+++.++..+..++..++.+++++++++....+.++.+..+++. +...+....+..++.
T Consensus 1011 nr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~ 1090 (1495)
T PLN03232 1011 NRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYA 1090 (1495)
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHH
Confidence 9999999999999999999888888877777666554422222221111111 111121111100000
Q ss_pred ------------------------------------H---------------HHHHHHhh-hhHHhh-cCCcC----HHH
Q 047286 420 ------------------------------------H---------------INAFCFFI-GSKLVE-HGDAT----FGE 442 (632)
Q Consensus 420 ------------------------------------~---------------~~~~~~~~-g~~~v~-~g~~s----~~~ 442 (632)
. ..++++++ +...+. .+.+. +..
T Consensus 1091 ~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 1170 (1495)
T PLN03232 1091 QFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGVMIWLTATFAVLRNGNAENQAGFAS 1170 (1495)
T ss_pred HHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccchH
Confidence 0 00111122 222222 22211 111
Q ss_pred HHH-HHHH--HHHHHHHHHHhHHhHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCC--cccccEEEee-----------
Q 047286 443 VFK-FLSE--FGCFWCLESTAVAPNADKAKGSAASIFEILESKPKIDWSSKDGMTPS--TVRGDIVFEH----------- 506 (632)
Q Consensus 443 ~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~--~~~g~I~f~~----------- 506 (632)
.+. ++.. .....+........+.+.++.+.+|+.++++.+++.++...+..+++ +..|+|+|+|
T Consensus 1171 ~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~~~~ 1250 (1495)
T PLN03232 1171 TMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPP 1250 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCCCCc
Confidence 111 1111 11112334444555777889999999999988776432111111111 2345666665
Q ss_pred -------------EEEEEecCCCChHHHHHhhhcCCChhh----------------------------------------
Q 047286 507 -------------TVALVGENGNGKSTVISLAERFHNPEQ---------------------------------------- 533 (632)
Q Consensus 507 -------------~vaIVG~SGsGKSTL~~ll~r~y~~~~---------------------------------------- 533 (632)
++|||||||||||||+++|+|+|+|++
T Consensus 1251 vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL 1330 (1495)
T PLN03232 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNI 1330 (1495)
T ss_pred ccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHc
Confidence 899999999999999999999999843
Q ss_pred ----------hcHHHHHHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh----------------------
Q 047286 534 ----------VIYSWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY---------------------- 581 (632)
Q Consensus 534 ----------~~~~~~~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~---------------------- 581 (632)
++.+....++++||.++|+||||.|||+|.+||||||||||||||+++
T Consensus 1331 ~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~I 1410 (1495)
T PLN03232 1331 DPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLI 1410 (1495)
T ss_pred CCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHH
Confidence 222223447789999999999999999999999999999999999877
Q ss_pred -------------hccccchhhhhcCCEEEEEeCCeEeeecChHHHhccCCchhHHHHHhh
Q 047286 582 -------------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKITDGTYASLTALH 629 (632)
Q Consensus 582 -------------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~~~~ 629 (632)
|+||||++|+++||+|+||++|+|+|.|+|+||+++++|.|++|++.+
T Consensus 1411 q~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~~~~~~f~~l~~~~ 1471 (1495)
T PLN03232 1411 QRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHST 1471 (1495)
T ss_pred HHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHh
Confidence 899999999999999999999999999999999987346999999865
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-71 Score=676.54 Aligned_cols=618 Identities=18% Similarity=0.234 Sum_probs=411.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------------------------------------
Q 047286 5 LPAIVIAGGITATVVAKLSCRGQIAYAEAEMLLSTQLEP----------------------------------------- 43 (632)
Q Consensus 5 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~----------------------------------------- 43 (632)
+++++.+..++.+++.+..++.++..++-.+.+.|.++|
T Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~ 546 (1522)
T TIGR00957 467 MVLMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFT 546 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566778888888888899999999999999943
Q ss_pred ------------------C---CcccHH-----------------HHHHHHHHHHHHHHHHHHHHHHhccCCCCC-----
Q 047286 44 ------------------L---EDMPLG-----------------QTSLNVNAFAAGQAAACKMFETIERIPKIN----- 80 (632)
Q Consensus 44 ------------------~---~~~~~~-----------------~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~----- 80 (632)
. +.++.+ ++...+..++++++|.+||.++++.+++..
T Consensus 547 ~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~ 626 (1522)
T TIGR00957 547 WVCTPFLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIER 626 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccccc
Confidence 0 011111 122345678999999999999996532110
Q ss_pred ----CC----------------C-----CcEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHH----hhcceEEE
Q 047286 81 ----PY----------------D-----NRFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEA----EQEKIGLV 131 (632)
Q Consensus 81 ----~~----------------~-----~~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~----~r~~i~~v 131 (632)
+. . +++||++++|++++|+||||||||||+++|.| .++|.+ ...+++||
T Consensus 627 ~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g--~~~~~~G~i~~~g~i~yv 704 (1522)
T TIGR00957 627 RTIKPGEGNSITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLA--EMDKVEGHVHMKGSVAYV 704 (1522)
T ss_pred cccCCCCCCcEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC--CCccCCcEEEECCEEEEE
Confidence 00 0 12899999999999999999999999999984 444432 33579999
Q ss_pred cccCcccccccccccccccCCCCCCHHHHHHHHHHccchhhHhhCCccccccc---------------------------
Q 047286 132 SKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV--------------------------- 184 (632)
Q Consensus 132 ~Q~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~~~v--------------------------- 184 (632)
+|+|+++++++++ |+.++.+ .++++++++++.|++.+++..+|.|++|.+
T Consensus 705 ~Q~~~l~~~Ti~e--NI~~g~~-~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~i 781 (1522)
T TIGR00957 705 PQQAWIQNDSLRE--NILFGKA-LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADI 781 (1522)
T ss_pred cCCccccCCcHHH--HhhcCCc-cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999988 7888754 467788889999999999999998887766
Q ss_pred -----ccCCCCHHHHHHHHHHHHH---HhCCceEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHhcCCCcHHHHHHH
Q 047286 185 -----ATNAVDAQSERIVQAAMVK---LVTNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVR 256 (632)
Q Consensus 185 -----~ts~LD~~~~~~i~~~l~~---~~~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~ 256 (632)
+|++||+++++.+.+.+.+ +.+++|+|++||+++.+..||+|++|++|++++.|+++++.+. ++.|.++..
T Consensus 782 llLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~-~~~~~~l~~ 860 (1522)
T TIGR00957 782 YLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQR-DGAFAEFLR 860 (1522)
T ss_pred EEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhc-chhHHHHHH
Confidence 2899999999999998864 3467999999999999999999999999999999999999865 456666654
Q ss_pred HHhhhhhhh--cc-------cccccc-------cc-----cCCCCC---CCccccc------cc---cccccc---CCch
Q 047286 257 LQEGAKEAQ--DK-------SLGVKH-------IL-----RGFPGP---IGVYETA------ER---SEDRIE---KDPT 300 (632)
Q Consensus 257 ~~~~~~~~~--~~-------~~~~~~-------~~-----~~~~~~---~~~~~~~------~~---~~~~~~---~~~~ 300 (632)
.+....+.. .. ...... .. ...... ....... .. ...... ....
T Consensus 861 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 940 (1522)
T TIGR00957 861 TYAPDEQQGHLEDSWTALVSGEGKEAKLIENGMLVTDVVGKQLQRQLSASSSDSGDQSRHHGSSAELQKAEAKEETWKLM 940 (1522)
T ss_pred hhccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccchhhhH
Confidence 332111000 00 000000 00 000000 0000000 00 000000 0011
Q ss_pred hHhhhhhH--HHHHHHhhccchhHHHH-HHHHHHHH------HHH------------------------HH---------
Q 047286 301 EIEKRKKV--SVTRLAYANRSEVPILL-IGSIAAVI------VFP------------------------IF--------- 338 (632)
Q Consensus 301 ~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~i------~~p------------------------~~--------- 338 (632)
..+.+..+ ++..+.+|.+...++.. +.+++.++ ..+ ++
T Consensus 941 ~~e~~~~g~v~~~~y~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~~~~iy~~l~i~~~~ 1020 (1522)
T TIGR00957 941 EADKAQTGQVELSVYWDYMKAIGLFITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGTQNNTSLRLSVYGALGILQGF 1020 (1522)
T ss_pred HHHHHhcCcccHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCcchHHHHHHHHHHHHHH
Confidence 12222222 23333333322111110 00000000 000 00
Q ss_pred -----HHHhh----------------h----------hcchhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047286 339 -----GLLLS----------------T----------SINIGAVGARLSTDASAVRSVVGDALGLIIQNIATIAAGLVIA 387 (632)
Q Consensus 339 -----~~~~~----------------~----------~~~~G~l~srls~D~~~i~~~~~~~~~~~~~~~~~~~~~~v~~ 387 (632)
.+++. . ..+.|++++|+++|++.++..++..+..++..++.+++.++++
T Consensus 1021 ~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~ 1100 (1522)
T TIGR00957 1021 AVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVI 1100 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 0 0123999999999999999999999999999999988888877
Q ss_pred HHH-HHHHHHHHHHHHHHHHH--HHHHhHHHHHHH---------------------------------------------
Q 047286 388 FTA-WKLAFITLAVPSLTIAE--GYLKKKKNYERL--------------------------------------------- 419 (632)
Q Consensus 388 ~~~-~~l~lv~l~~~~l~~~~--~~~~~~~~~~~~--------------------------------------------- 419 (632)
++. |.+++++++++++++.. .|.+..+..++.
T Consensus 1101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~ 1180 (1522)
T TIGR00957 1101 LLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKA 1180 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 766 44443333333322221 121111100000
Q ss_pred -----------------HHHHHHHhhhhHHhh-cCCcCHHHHHHHHHHH--HHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Q 047286 420 -----------------HINAFCFFIGSKLVE-HGDATFGEVFKFLSEF--GCFWCLESTAVAPNADKAKGSAASIFEIL 479 (632)
Q Consensus 420 -----------------~~~~~~~~~g~~~v~-~g~~s~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~ri~~~l 479 (632)
....++++.+...+. .|.++.|.+.+++... ...++........+++.++.+++|+.+++
T Consensus 1181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~ 1260 (1522)
T TIGR00957 1181 YYPSIVANRWLAVRLECVGNCIVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYS 1260 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 001122333444443 5778898877666332 22345566667778889999999999999
Q ss_pred ccCCCCCCCCCCCCCCC--cccccEEEee------------------------EEEEEecCCCChHHHHHhhhcCCChhh
Q 047286 480 ESKPKIDWSSKDGMTPS--TVRGDIVFEH------------------------TVALVGENGNGKSTVISLAERFHNPEQ 533 (632)
Q Consensus 480 ~~~~~~~~~~~~~~~~~--~~~g~I~f~~------------------------~vaIVG~SGsGKSTL~~ll~r~y~~~~ 533 (632)
+.+++.++...+..+++ +.+|+|+|+| ++|||||||||||||+++|+|+|+|++
T Consensus 1261 ~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~ 1340 (1522)
T TIGR00957 1261 ETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAE 1340 (1522)
T ss_pred cCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCC
Confidence 87766432111111111 2345666665 899999999999999999999999843
Q ss_pred --------------------------------------------------hcHHHHHHHHHHHHhcCCCccCcccccCCC
Q 047286 534 --------------------------------------------------VIYSWIIIKCTNFIASLPQGSDLNVGERGL 563 (632)
Q Consensus 534 --------------------------------------------------~~~~~~~~~~~~~i~~lp~g~dt~vge~G~ 563 (632)
+|.+....++++||.++|+||||.|||+|.
T Consensus 1341 G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~ 1420 (1522)
T TIGR00957 1341 GEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGE 1420 (1522)
T ss_pred CeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCC
Confidence 222333447889999999999999999999
Q ss_pred CCChHHHHHHHHHHHHhh-----------------------------------hccccchhhhhcCCEEEEEeCCeEeee
Q 047286 564 QLSGGLKQRIARTRARNY-----------------------------------CGCGSPPYHYKNADITSVVKNGVIAEK 608 (632)
Q Consensus 564 ~LSgGQrQRiaiARA~~~-----------------------------------~~iahrl~~~~~aD~I~vl~~G~ive~ 608 (632)
+||||||||||||||+++ |+||||++|+++||+|+|||+|+|+|.
T Consensus 1421 ~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~ 1500 (1522)
T TIGR00957 1421 NLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEF 1500 (1522)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999877 899999999999999999999999999
Q ss_pred cChHHHhccCCchhHHHHHhh
Q 047286 609 GRHDALMKITDGTYASLTALH 629 (632)
Q Consensus 609 G~h~eL~~~~~g~y~~l~~~~ 629 (632)
|+|+||+++ +|.|++|++..
T Consensus 1501 G~~~eLl~~-~~~f~~l~~~~ 1520 (1522)
T TIGR00957 1501 GAPSNLLQQ-RGIFYSMAKDA 1520 (1522)
T ss_pred CCHHHHHhC-CCHHHHHHHHc
Confidence 999999997 89999999763
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-66 Score=630.44 Aligned_cols=537 Identities=17% Similarity=0.195 Sum_probs=341.4
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHH----hhcceEEEcccCcccccccccccccccCCCCCCHHHHH
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEA----EQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIR 161 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~----~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 161 (632)
+||+|++|++++|+||||||||||+++|.|. ++|.+ .+++++|++|+|+++.+++.+ |+.++.+ .+.+++.
T Consensus 679 isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~--~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~e--nI~~~~~-~~~~~~~ 753 (1560)
T PTZ00243 679 VSVSVPRGKLTVVLGATGSGKSTLLQSLLSQ--FEISEGRVWAERSIAYVPQQAWIMNATVRG--NILFFDE-EDAARLA 753 (1560)
T ss_pred eEEEECCCCEEEEECCCCCcHHHHHHHHhcC--CCCCCcEEEECCeEEEEeCCCccCCCcHHH--HHHcCCh-hhHHHHH
Confidence 7899999999999999999999999999854 33322 356799999999999888887 7887643 3456778
Q ss_pred HHHHHccchhhHhhCCccccccc--------------------------------ccCCCCHHHHHHHHH-HHHHHhCCc
Q 047286 162 PAVQLANAEKSIDKLPLGLDTVV--------------------------------ATNAVDAQSERIVQA-AMVKLVTNQ 208 (632)
Q Consensus 162 ~~~~~~~l~~~i~~l~~g~~~~v--------------------------------~ts~LD~~~~~~i~~-~l~~~~~~~ 208 (632)
++++.|+++++++.+|+|+++.+ +|++||+++++.+.+ ++....+++
T Consensus 754 ~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~ 833 (1560)
T PTZ00243 754 DAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGK 833 (1560)
T ss_pred HHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCC
Confidence 88888888888888887776554 289999998887765 444445689
Q ss_pred eEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHhcCCCcHHHHHHHHHhhhhhh-h--ccccc-ccccccCC--C-CC
Q 047286 209 TVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQEGAKEA-Q--DKSLG-VKHILRGF--P-GP 281 (632)
Q Consensus 209 tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~~~~~~~~~-~--~~~~~-~~~~~~~~--~-~~ 281 (632)
|+|++||+++.+..||+|++|++|+++++|+++++.+. +.|..+........+. . ..... ..+..... . ..
T Consensus 834 TvIlvTH~~~~~~~ad~ii~l~~G~i~~~G~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 911 (1560)
T PTZ00243 834 TRVLATHQVHVVPRADYVVALGDGRVEFSGSSADFMRT--SLYATLAAELKENKDSKEGDADAEVAEVDAAPGGAVDHEP 911 (1560)
T ss_pred EEEEEeCCHHHHHhCCEEEEEECCEEEEecCHHHHHhC--hHHHHHHHhhcccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999764 3455554332111100 0 00000 00000000 0 00
Q ss_pred CCccccc--cccc----ccccCCchhHhhhhhH--HHHHHHhhccchh---HHHHHHH--HHH-H---------------
Q 047286 282 IGVYETA--ERSE----DRIEKDPTEIEKRKKV--SVTRLAYANRSEV---PILLIGS--IAA-V--------------- 332 (632)
Q Consensus 282 ~~~~~~~--~~~~----~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~---~~~~~~~--~~~-~--------------- 332 (632)
....+.. .... +.........+++..+ ++..+.+|.+... ..+.+.+ +++ +
T Consensus 912 ~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~g~v~~~~y~~Y~~~~g~~~~~~~~l~~~~~~~~~~~~~~~wl~~w~~~ 991 (1560)
T PTZ00243 912 PVAKQEGNAEGGDGAALDAAAGRLMTREEKASGSVPWSTYVAYLRFCGGLHAAGFVLATFAVTELVTVSSGVWLSMWSTR 991 (1560)
T ss_pred cccccccccccccccccccccchhhhHHHHhcCcccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 0000000 0000 0000001112222212 3333333322211 1110000 000 0
Q ss_pred ----------------H----HHHHHHHH----hh-------------h----------hcchhhHHHHHhhhHHHHHHH
Q 047286 333 ----------------I----VFPIFGLL----LS-------------T----------SINIGAVGARLSTDASAVRSV 365 (632)
Q Consensus 333 ----------------i----~~p~~~~~----~~-------------~----------~~~~G~l~srls~D~~~i~~~ 365 (632)
. +..++..+ .. . ..+.|+++|||++|++.+++.
T Consensus 992 ~~~~~~~~~l~~y~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~ 1071 (1560)
T PTZ00243 992 SFKLSAATYLYVYLGIVLLGTFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNT 1071 (1560)
T ss_pred ccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHH
Confidence 0 00000000 00 0 012399999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH--HHHHHhHHHHHHH-----------------------
Q 047286 366 VGDALGLIIQNIATIAAGLVIAFTA-WKLAFITLAVPSLTIA--EGYLKKKKNYERL----------------------- 419 (632)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~v~~~~~-~~l~lv~l~~~~l~~~--~~~~~~~~~~~~~----------------------- 419 (632)
++..+..++..++.+++.++++++. |.+.++++.+..+++. ..|....+..++.
T Consensus 1072 l~~~l~~~~~~~~~~i~~li~~~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIr 1151 (1560)
T PTZ00243 1072 LPMSYLYLLQCLFSICSSILVTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATIT 1151 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHH
Confidence 9999999999998888888877766 5333322222111111 1111111110000
Q ss_pred ------------------------------------------HHHHHHHhhhhH--HhhcCCcCHHHHHHHHH--HHHHH
Q 047286 420 ------------------------------------------HINAFCFFIGSK--LVEHGDATFGEVFKFLS--EFGCF 453 (632)
Q Consensus 420 ------------------------------------------~~~~~~~~~g~~--~v~~g~~s~~~~~~~~~--~~~~~ 453 (632)
.....+.+++.. ....+.+++|.+..++. .....
T Consensus 1152 af~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~ 1231 (1560)
T PTZ00243 1152 AYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTA 1231 (1560)
T ss_pred hCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH
Confidence 000011112222 22234466775544442 22223
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHHHccCCCCCCCC-------------------------CCCC----CCCcccccEEE
Q 047286 454 WCLESTAVAPNADKAKGSAASIFEILESKPKIDWSS-------------------------KDGM----TPSTVRGDIVF 504 (632)
Q Consensus 454 ~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~-------------------------~~~~----~~~~~~g~I~f 504 (632)
.+..+.....+++.++.+.+|+.++++..++.+.+. +... +..+..|.|+|
T Consensus 1232 ~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f 1311 (1560)
T PTZ00243 1232 TLNWLVRQVATVEADMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVF 1311 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEE
Confidence 345556666788899999999999996443221000 0000 00113466777
Q ss_pred ee------------------------EEEEEecCCCChHHHHHhhhcCCChhh---------------------------
Q 047286 505 EH------------------------TVALVGENGNGKSTVISLAERFHNPEQ--------------------------- 533 (632)
Q Consensus 505 ~~------------------------~vaIVG~SGsGKSTL~~ll~r~y~~~~--------------------------- 533 (632)
+| +||||||||||||||+++|+|+|+|++
T Consensus 1312 ~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQ 1391 (1560)
T PTZ00243 1312 EGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQ 1391 (1560)
T ss_pred EEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECC
Confidence 76 799999999999999999999999843
Q ss_pred -----------------------hcHHHHHHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh---------
Q 047286 534 -----------------------VIYSWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY--------- 581 (632)
Q Consensus 534 -----------------------~~~~~~~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~--------- 581 (632)
+|.+....++++||.++|+||||.|||+|.|||||||||||||||+++
T Consensus 1392 dp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLD 1471 (1560)
T PTZ00243 1392 DPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMD 1471 (1560)
T ss_pred CCccccccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 222223347789999999999999999999999999999999999875
Q ss_pred ---------------------------hccccchhhhhcCCEEEEEeCCeEeeecChHHHhccCCchhHHHHHhh
Q 047286 582 ---------------------------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKITDGTYASLTALH 629 (632)
Q Consensus 582 ---------------------------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~~~~ 629 (632)
|+||||++|+++||+|+||++|+|+|.|+|+||+++++|.|++|++.+
T Consensus 1472 EATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~ 1546 (1560)
T PTZ00243 1472 EATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEAL 1546 (1560)
T ss_pred CCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHh
Confidence 899999999999999999999999999999999985589999999865
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-63 Score=605.88 Aligned_cols=248 Identities=17% Similarity=0.213 Sum_probs=191.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------------------------------------
Q 047286 3 ACLPAIVIAGGITATVVAKLSCRGQIAYAEAEMLLSTQLEP--------------------------------------- 43 (632)
Q Consensus 3 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~--------------------------------------- 43 (632)
+++|+++.+..++++++.+..++.++..++-.+.+.|.+.|
T Consensus 229 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~ 308 (1490)
T TIGR01271 229 GFLILLALFQACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYS 308 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777778888999999999999999999999999944
Q ss_pred --------------------CCcccHHH------------------HHHHHHHHHHHHHHHHHHHHHhccCCCCC-----
Q 047286 44 --------------------LEDMPLGQ------------------TSLNVNAFAAGQAAACKMFETIERIPKIN----- 80 (632)
Q Consensus 44 --------------------~~~~~~~~------------------~~~~~~~~~~~~~a~~ri~~~~~~~~~~~----- 80 (632)
.+.++++. +...+..+.++.++.+||.++++.++...
T Consensus 309 ~~~~~~~~~~~~~~f~~y~~~~~~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~~~ 388 (1490)
T TIGR01271 309 SAFFFSGFFVVFLSVVPYALIKGIILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTLEYNL 388 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccC
Confidence 00112221 11224556779999999999996432100
Q ss_pred ---------------C------------------------------------CCCcEEEEeeCCCEEEEEcCCCchHHHH
Q 047286 81 ---------------P------------------------------------YDNRFLQHVPSGTTVALVGQSGSGKSTV 109 (632)
Q Consensus 81 ---------------~------------------------------------~~~~~~~~i~~Ge~~~ivG~sGsGKSTL 109 (632)
. .-.++||+|++|++++|+||||||||||
T Consensus 389 ~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTL 468 (1490)
T TIGR01271 389 TTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSL 468 (1490)
T ss_pred CCCceEEecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHH
Confidence 0 0013899999999999999999999999
Q ss_pred HHHHHhCCCCCcHH--hhcceEEEcccCcccccccccccccccCCCCCCHHHHHHHHHHccchhhHhhCCccccccc---
Q 047286 110 INLVESFRFYAPEA--EQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV--- 184 (632)
Q Consensus 110 l~ll~~~~~~~~~~--~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~~~v--- 184 (632)
+++|.|........ ...+++||+|+|++|.+++.+ |+.++.. .+.+++.++++.|++.+++..+|.|++|.+
T Consensus 469 l~~l~G~~~~~~G~i~~~g~iayv~Q~~~l~~~Ti~e--NI~~g~~-~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~ 545 (1490)
T TIGR01271 469 LMMIMGELEPSEGKIKHSGRISFSPQTSWIMPGTIKD--NIIFGLS-YDEYRYTSVIKACQLEEDIALFPEKDKTVLGEG 545 (1490)
T ss_pred HHHHhCCCCCCCceEEECCEEEEEeCCCccCCccHHH--HHHhccc-cchHHHHHHHHHHhHHHHHHhccccccccccCc
Confidence 99998543222111 335699999999999988887 7888753 456678888899999998888888776655
Q ss_pred -----------------------------ccCCCCHHHHHHHHH-HHHHHhCCceEEEEecCchHHhhcCeEEEEeCCeE
Q 047286 185 -----------------------------ATNAVDAQSERIVQA-AMVKLVTNQTVVIVANCLITIRNADCIIMVSKGKI 234 (632)
Q Consensus 185 -----------------------------~ts~LD~~~~~~i~~-~l~~~~~~~tviiitH~~~~~~~aD~i~vl~~G~i 234 (632)
++++||+++++.+.+ ++.++.+++|+|++||+++.+..||+|++|++|++
T Consensus 546 g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i 625 (1490)
T TIGR01271 546 GITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVC 625 (1490)
T ss_pred CCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEE
Confidence 289999999999987 56777778999999999999989999999999999
Q ss_pred EEecChhHHhcCCCcHHHHH
Q 047286 235 VEKGTHDELIEDPEGAYSQL 254 (632)
Q Consensus 235 ~~~g~~~el~~~~~~~~~~~ 254 (632)
++.|+++++... +..|...
T Consensus 626 ~~~g~~~~l~~~-~~~~~~~ 644 (1490)
T TIGR01271 626 YFYGTFSELQAK-RPDFSSL 644 (1490)
T ss_pred EEEcCHHHHHhc-ChHHHHH
Confidence 999999999764 3444443
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-58 Score=497.86 Aligned_cols=281 Identities=31% Similarity=0.453 Sum_probs=237.4
Q ss_pred hhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhH--H-----------
Q 047286 349 GAVGARLSTDASAVRSVVGDALGLIIQNIATIAAGLVIAFTA-WKLAFITLAVPSLTIAEGYLKKK--K----------- 414 (632)
Q Consensus 349 G~l~srls~D~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~l~lv~l~~~~l~~~~~~~~~~--~----------- 414 (632)
|+|+||+++|+..+.+.++..+...+++.+..++++.+|+.. |+|+++.+..+|++.....+..+ +
T Consensus 245 GeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A 324 (716)
T KOG0058|consen 245 GELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALA 324 (716)
T ss_pred cHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999977 99999998888877654421111 0
Q ss_pred ---------------------------HHHHH---------------------------HHHHHHHhhhhHHhhcCCcCH
Q 047286 415 ---------------------------NYERL---------------------------HINAFCFFIGSKLVEHGDATF 440 (632)
Q Consensus 415 ---------------------------~~~~~---------------------------~~~~~~~~~g~~~v~~g~~s~ 440 (632)
.|.+. .....++++|++++..|.++.
T Consensus 325 ~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~ 404 (716)
T KOG0058|consen 325 RANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTS 404 (716)
T ss_pred HHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccch
Confidence 00000 123356889999999999999
Q ss_pred HHHHHHHHHHHH--HHHHHHHhHHhHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCcccccEEEee------------
Q 047286 441 GEVFKFLSEFGC--FWCLESTAVAPNADKAKGSAASIFEILESKPKIDWSSKDGMTPSTVRGDIVFEH------------ 506 (632)
Q Consensus 441 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~f~~------------ 506 (632)
|++.+|+.+... ..+..+.....+++++..|.+|+||++|.+|..+.+ +...|....|.|+|+|
T Consensus 405 g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~--G~~~p~~~~G~IeF~~VsFaYP~Rp~~~ 482 (716)
T KOG0058|consen 405 GALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLT--GTLAPDHLQGVIEFEDVSFAYPTRPDVP 482 (716)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCC--CccccccccceEEEEEeeeecCCCCCch
Confidence 999999854332 235566777789999999999999999999988654 3333335789999998
Q ss_pred -------------EEEEEecCCCChHHHHHhhhcCCChhh------------hc--------------------------
Q 047286 507 -------------TVALVGENGNGKSTVISLAERFHNPEQ------------VI-------------------------- 535 (632)
Q Consensus 507 -------------~vaIVG~SGsGKSTL~~ll~r~y~~~~------------~~-------------------------- 535 (632)
+||+||||||||||+++||+|||+|++ ++
T Consensus 483 Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI 562 (716)
T KOG0058|consen 483 VLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENI 562 (716)
T ss_pred hhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHH
Confidence 799999999999999999999999954 11
Q ss_pred -------------HHHHHHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh---------------------
Q 047286 536 -------------YSWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY--------------------- 581 (632)
Q Consensus 536 -------------~~~~~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~--------------------- 581 (632)
.+....|+|+||.++|+||||.|||+|.+||||||||||||||+++
T Consensus 563 ~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~l 642 (716)
T KOG0058|consen 563 AYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYL 642 (716)
T ss_pred hcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHH
Confidence 1222448999999999999999999999999999999999999887
Q ss_pred --------------hccccchhhhhcCCEEEEEeCCeEeeecChHHHhccCCchhHHHHHhhhc
Q 047286 582 --------------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKITDGTYASLTALHMS 631 (632)
Q Consensus 582 --------------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~~~~~~ 631 (632)
++|||||+|+++||+|+|+++|+|+|.|+|+|||++++|.|++|++.|.-
T Consensus 643 Vq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~~~~gly~~Lv~~q~~ 706 (716)
T KOG0058|consen 643 VQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDELLSKPNGLYAKLVQRQLD 706 (716)
T ss_pred HHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHHHhhCcccHHHHHHHHhcc
Confidence 89999999999999999999999999999999999867999999999864
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-51 Score=462.35 Aligned_cols=281 Identities=38% Similarity=0.585 Sum_probs=237.3
Q ss_pred hhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhH----------HHHH
Q 047286 349 GAVGARLSTDASAVRSVVGDALGLIIQNIATIAAGLVIAFTA-WKLAFITLAVPSLTIAEGYLKKK----------KNYE 417 (632)
Q Consensus 349 G~l~srls~D~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~l~lv~l~~~~l~~~~~~~~~~----------~~~~ 417 (632)
|++.+|+++|++.+++.++..++.+++.+..++++++++|+. |+|+++.+.+.|++.....+..+ ..+.
T Consensus 128 g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F~~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya 207 (1228)
T KOG0055|consen 128 GELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFYYGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYA 207 (1228)
T ss_pred cceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988 99999999999988765533221 0111
Q ss_pred HH---------------------------------------------------------HHHHHHHhhhhHHhhcCCcCH
Q 047286 418 RL---------------------------------------------------------HINAFCFFIGSKLVEHGDATF 440 (632)
Q Consensus 418 ~~---------------------------------------------------------~~~~~~~~~g~~~v~~g~~s~ 440 (632)
++ ...++.+|||+.++.++..+.
T Consensus 208 ~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~gi~~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~ 287 (1228)
T KOG0055|consen 208 KAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGIKKGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNG 287 (1228)
T ss_pred HHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 00 235567999999999999999
Q ss_pred HHHHHHH--HHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCcccccEEEee------------
Q 047286 441 GEVFKFL--SEFGCFWCLESTAVAPNADKAKGSAASIFEILESKPKIDWSSKDGMTPSTVRGDIVFEH------------ 506 (632)
Q Consensus 441 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~f~~------------ 506 (632)
|+++..+ ..++...+.+..........+..++.++++.++..|+.+....++......+|+|+|+|
T Consensus 288 g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~ 367 (1228)
T KOG0055|consen 288 GDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETIDRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVK 367 (1228)
T ss_pred ceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHhcCCCCCCcccccCCcccccccceEEEEEEecCCCCCcch
Confidence 9877655 33343446777777778888999999999999999887754433334455778899988
Q ss_pred -------------EEEEEecCCCChHHHHHhhhcCCChhh------------hcHHHH----------------------
Q 047286 507 -------------TVALVGENGNGKSTVISLAERFHNPEQ------------VIYSWI---------------------- 539 (632)
Q Consensus 507 -------------~vaIVG~SGsGKSTL~~ll~r~y~~~~------------~~~~~~---------------------- 539 (632)
+|||||||||||||+++||+|||||++ ++..|+
T Consensus 368 Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI 447 (1228)
T KOG0055|consen 368 ILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENI 447 (1228)
T ss_pred hhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHH
Confidence 799999999999999999999999954 112221
Q ss_pred -----------------HHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh---------------------
Q 047286 540 -----------------IIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY--------------------- 581 (632)
Q Consensus 540 -----------------~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~--------------------- 581 (632)
..++++||..||+||||.|||+|.+||||||||||||||+++
T Consensus 448 ~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~ 527 (1228)
T KOG0055|consen 448 RYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERV 527 (1228)
T ss_pred hcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHH
Confidence 337899999999999999999999999999999999999877
Q ss_pred --------------hccccchhhhhcCCEEEEEeCCeEeeecChHHHhccCCchhHHHHHhhh
Q 047286 582 --------------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKITDGTYASLTALHM 630 (632)
Q Consensus 582 --------------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~~~~~ 630 (632)
++|||||+|||+||+|+||++|+|||+|+|+||++. +|.|++|++.|.
T Consensus 528 Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G~h~ELi~~-~G~Y~~lv~~Q~ 589 (1228)
T KOG0055|consen 528 VQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQGTHDELIAL-GGIYSSLVRLQE 589 (1228)
T ss_pred HHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEEecCHHHHHhc-cchHHHHHHHHh
Confidence 899999999999999999999999999999999998 799999999884
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-49 Score=441.83 Aligned_cols=279 Identities=27% Similarity=0.395 Sum_probs=226.9
Q ss_pred hhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhH---HHH--------
Q 047286 349 GAVGARLSTDASAVRSVVGDALGLIIQNIATIAAGLVIAFTA-WKLAFITLAVPSLTIAEGYLKKK---KNY-------- 416 (632)
Q Consensus 349 G~l~srls~D~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~l~lv~l~~~~l~~~~~~~~~~---~~~-------- 416 (632)
|++++|+. |.+.+++++...+...+-.+...++.+++++++ |+|++++++..|+++...++..+ +..
T Consensus 251 Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a 329 (709)
T COG2274 251 GEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESA 329 (709)
T ss_pred hhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999985 899999999887777666665555555555555 99999999988887655432211 000
Q ss_pred ---------------------------------HHH-----------------------HHHHHHHhhhhHHhhcCCcCH
Q 047286 417 ---------------------------------ERL-----------------------HINAFCFFIGSKLVEHGDATF 440 (632)
Q Consensus 417 ---------------------------------~~~-----------------------~~~~~~~~~g~~~v~~g~~s~ 440 (632)
.+. .....++|+|+.+|..|.+|+
T Consensus 330 ~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTl 409 (709)
T COG2274 330 EQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTL 409 (709)
T ss_pred HHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch
Confidence 000 234578999999999999999
Q ss_pred HHHHHHHHHHH--HHHHHHHHhHHhHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCcccccEEEee------------
Q 047286 441 GEVFKFLSEFG--CFWCLESTAVAPNADKAKGSAASIFEILESKPKIDWSSKDGMTPSTVRGDIVFEH------------ 506 (632)
Q Consensus 441 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~f~~------------ 506 (632)
|++++|.+... ..++.++...+.+++....+.+|+.++++.|+|.+.+. .....+...|+|+|+|
T Consensus 410 G~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~-~~~~~~~~~g~I~~~nvsf~y~~~~~~v 488 (709)
T COG2274 410 GQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDK-TLIHLPKLQGEIEFENVSFRYGPDDPPV 488 (709)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccc-ccccccccCceEEEEEEEEEeCCCCcch
Confidence 99999985444 34678888889999999999999999999999865322 1223445667777776
Q ss_pred ------------EEEEEecCCCChHHHHHhhhcCCChhh-----------------------------------------
Q 047286 507 ------------TVALVGENGNGKSTVISLAERFHNPEQ----------------------------------------- 533 (632)
Q Consensus 507 ------------~vaIVG~SGsGKSTL~~ll~r~y~~~~----------------------------------------- 533 (632)
+|||||+||||||||+++|.|+|+|++
T Consensus 489 L~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~ 568 (709)
T COG2274 489 LEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIA 568 (709)
T ss_pred hhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHh
Confidence 799999999999999999999999943
Q ss_pred ----------hcHHHHHHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh----------------------
Q 047286 534 ----------VIYSWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY---------------------- 581 (632)
Q Consensus 534 ----------~~~~~~~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~---------------------- 581 (632)
+..+....++|+||.++|.||||+|||+|.+|||||||||+||||+++
T Consensus 569 l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I 648 (709)
T COG2274 569 LGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAII 648 (709)
T ss_pred cCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHH
Confidence 222223448899999999999999999999999999999999999665
Q ss_pred -------------hccccchhhhhcCCEEEEEeCCeEeeecChHHHhccCCchhHHHHHhhh
Q 047286 582 -------------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKITDGTYASLTALHM 630 (632)
Q Consensus 582 -------------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~~~~~ 630 (632)
|+||||++++++||||+|||+|+|+|+|||+||++. +|.|+++|..|.
T Consensus 649 ~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~-~g~y~~l~~~q~ 709 (709)
T COG2274 649 LQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQ-GGLYARLYQQQE 709 (709)
T ss_pred HHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHh-cChHHHHHhccC
Confidence 899999999999999999999999999999999998 999999998773
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-45 Score=408.31 Aligned_cols=280 Identities=32% Similarity=0.448 Sum_probs=218.0
Q ss_pred hhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-HHHhH-----HH-----
Q 047286 348 IGAVGARLSTDASAVRSVVGDALGLIIQNIATIAAGLVIAFTA-WKLAFITLAVPSLTIAEG-YLKKK-----KN----- 415 (632)
Q Consensus 348 ~G~l~srls~D~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~l~lv~l~~~~l~~~~~-~~~~~-----~~----- 415 (632)
.|.+.+|+++|++.++..+......+...++.+++.+++++.. |.++++.+...|++.... ++.++ +.
T Consensus 108 ~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (567)
T COG1132 108 SGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKLSRRVREAL 187 (567)
T ss_pred cchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3999999999999999999988666666777778888888777 999988887766654433 22111 00
Q ss_pred -----------------------------HHHH---------------------------HHHHHHHhhhhHHhhcCCcC
Q 047286 416 -----------------------------YERL---------------------------HINAFCFFIGSKLVEHGDAT 439 (632)
Q Consensus 416 -----------------------------~~~~---------------------------~~~~~~~~~g~~~v~~g~~s 439 (632)
+... .....++++|..++..+.++
T Consensus 188 ~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (567)
T COG1132 188 GELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVLVLALGGFLVLSGSLT 267 (567)
T ss_pred HHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 0000 12334677888999999999
Q ss_pred HHHHHHHHHHHH--HHHHHHHHhHHhHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCcccccEE--------------
Q 047286 440 FGEVFKFLSEFG--CFWCLESTAVAPNADKAKGSAASIFEILESKPKIDWSSKDGMTPSTVRGDIV-------------- 503 (632)
Q Consensus 440 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~-------------- 503 (632)
+|.++.++.... ..++..........+.+..+.+|++++++.+++...+... .....|+|+
T Consensus 268 ~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~---~~~~~~~I~f~~vsf~y~~~~~v 344 (567)
T COG1132 268 VGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDP---LKDTIGSIEFENVSFSYPGKKPV 344 (567)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCC---CCCCCCeEEEEEEEEEcCCCCcc
Confidence 999988874333 2346666777778888999999999999987754322111 011122333
Q ss_pred ---------EeeEEEEEecCCCChHHHHHhhhcCCChhh-----------------------------------------
Q 047286 504 ---------FEHTVALVGENGNGKSTVISLAERFHNPEQ----------------------------------------- 533 (632)
Q Consensus 504 ---------f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~----------------------------------------- 533 (632)
.++++|||||||||||||++||.|||+|++
T Consensus 345 l~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~ 424 (567)
T COG1132 345 LKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIA 424 (567)
T ss_pred ccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHh
Confidence 334899999999999999999999999932
Q ss_pred ----------hcHHHHHHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh----------------------
Q 047286 534 ----------VIYSWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY---------------------- 581 (632)
Q Consensus 534 ----------~~~~~~~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~---------------------- 581 (632)
++.+....+++|||+++|+||||.|||+|.+||||||||||||||+++
T Consensus 425 ~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I 504 (567)
T COG1132 425 LGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALI 504 (567)
T ss_pred cCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHH
Confidence 222222447899999999999999999999999999999999999776
Q ss_pred -------------hccccchhhhhcCCEEEEEeCCeEeeecChHHHhccCCchhHHHHHhhhc
Q 047286 582 -------------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKITDGTYASLTALHMS 631 (632)
Q Consensus 582 -------------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~~~~~~ 631 (632)
++||||++|+++||+|+|||+|+|+|+|+|+||+++ +|.|++||+.|..
T Consensus 505 ~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~-~g~y~~l~~~~~~ 566 (567)
T COG1132 505 QDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAK-GGLYARLYQAQGG 566 (567)
T ss_pred HHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHc-CCHHHHHHHHhhc
Confidence 579999999999999999999999999999999998 9999999998864
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-43 Score=398.98 Aligned_cols=279 Identities=21% Similarity=0.198 Sum_probs=203.5
Q ss_pred hhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-hH-----H-------
Q 047286 349 GAVGARLSTDASAVRSVVGDALGLIIQNIATIAAGLVIAFTA-WKLAFITLAVPSLTIAEGYLK-KK-----K------- 414 (632)
Q Consensus 349 G~l~srls~D~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~l~lv~l~~~~l~~~~~~~~-~~-----~------- 414 (632)
|++++|+++|++.+++.+...+..++..++.+++.+++++.. |.++++++++.|+.+...+.. ++ +
T Consensus 120 g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (588)
T PRK11174 120 GSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGLILLGTAPLIPLFMALVGMGAADANRRNFLALA 199 (588)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998888888888888888777766 999888887777654433211 10 0
Q ss_pred ---------------------------HHHHH---------------------------HHHHHHHhhhhHHhhcCCcCH
Q 047286 415 ---------------------------NYERL---------------------------HINAFCFFIGSKLVEHGDATF 440 (632)
Q Consensus 415 ---------------------------~~~~~---------------------------~~~~~~~~~g~~~v~~g~~s~ 440 (632)
.+.+. ....++.++++..+ .|.+++
T Consensus 200 ~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~t~ 278 (588)
T PRK11174 200 RLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFLSSAVLEFFASISIALVAVYFGFSY-LGELNF 278 (588)
T ss_pred HHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccc
Confidence 00000 00111223444433 377777
Q ss_pred HHH-------HHHH----HHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCcccccEEEe----
Q 047286 441 GEV-------FKFL----SEFGCFWCLESTAVAPNADKAKGSAASIFEILESKPKIDWSSKDGMTPSTVRGDIVFE---- 505 (632)
Q Consensus 441 ~~~-------~~~~----~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~f~---- 505 (632)
|.+ ..+. ......++.........+.++..+.+|+.++++.+++.+....... +....++|+|+
T Consensus 279 G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~-~~~~~~~i~~~~vsf 357 (588)
T PRK11174 279 GHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTFLETPLAHPQQGEKEL-ASNDPVTIEAEDLEI 357 (588)
T ss_pred ccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCcccc-CCCCCceEEEEeeEE
Confidence 754 1111 1112234566667777888999999999999987654221110000 00011223333
Q ss_pred -------------------eEEEEEecCCCChHHHHHhhhcCCChhh---------------------------------
Q 047286 506 -------------------HTVALVGENGNGKSTVISLAERFHNPEQ--------------------------------- 533 (632)
Q Consensus 506 -------------------~~vaIVG~SGsGKSTL~~ll~r~y~~~~--------------------------------- 533 (632)
+++|||||||||||||+++|.|+| |++
T Consensus 358 ~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~ 436 (588)
T PRK11174 358 LSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPH 436 (588)
T ss_pred eccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCC
Confidence 389999999999999999999999 632
Q ss_pred ------------------hcHHHHHHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh--------------
Q 047286 534 ------------------VIYSWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY-------------- 581 (632)
Q Consensus 534 ------------------~~~~~~~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~-------------- 581 (632)
++.+....++++||.+||+||||.|||+|.+||||||||||||||+++
T Consensus 437 ~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaL 516 (588)
T PRK11174 437 GTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASL 516 (588)
T ss_pred cCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCC
Confidence 111222347889999999999999999999999999999999999776
Q ss_pred ---------------------hccccchhhhhcCCEEEEEeCCeEeeecChHHHhccCCchhHHHHHhhhc
Q 047286 582 ---------------------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKITDGTYASLTALHMS 631 (632)
Q Consensus 582 ---------------------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~~~~~~ 631 (632)
|+||||++++++||+|+||++|+|+|+|+|+||+++ +|.|+++++.|..
T Consensus 517 D~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~G~~~eL~~~-~~~y~~l~~~q~~ 586 (588)
T PRK11174 517 DAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDYAELSQA-GGLFATLLAHRQE 586 (588)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEeecCCHHHHHhc-chHHHHHHHHhhc
Confidence 799999999999999999999999999999999997 9999999998864
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=398.74 Aligned_cols=275 Identities=29% Similarity=0.397 Sum_probs=213.7
Q ss_pred hhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhH------H-------
Q 047286 349 GAVGARLSTDASAVRSVVGDALGLIIQNIATIAAGLVIAFTA-WKLAFITLAVPSLTIAEGYLKKK------K------- 414 (632)
Q Consensus 349 G~l~srls~D~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~l~lv~l~~~~l~~~~~~~~~~------~------- 414 (632)
|++++|+++|++.+++.+...+..++..++.+++++++++.. |++++++++..|+.+....+..+ +
T Consensus 258 G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 337 (711)
T TIGR00958 258 GELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVA 337 (711)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998888888887766 99988877776665443321110 0
Q ss_pred ---------------------------HHHHH---------------------------HHHHHHHhhhhHHhhcCCcCH
Q 047286 415 ---------------------------NYERL---------------------------HINAFCFFIGSKLVEHGDATF 440 (632)
Q Consensus 415 ---------------------------~~~~~---------------------------~~~~~~~~~g~~~v~~g~~s~ 440 (632)
.+.+. ...++++++|++++..|.+++
T Consensus 338 ~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~ 417 (711)
T TIGR00958 338 KANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSS 417 (711)
T ss_pred HHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCH
Confidence 00000 112345678899999999999
Q ss_pred HHHHHHHHHH--HHHHHHHHHhHHhHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCcccccEE---------------
Q 047286 441 GEVFKFLSEF--GCFWCLESTAVAPNADKAKGSAASIFEILESKPKIDWSSKDGMTPSTVRGDIV--------------- 503 (632)
Q Consensus 441 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~--------------- 503 (632)
|++++++... ...++..+......++++..+.+|++++++.+++.+.+. ...+.+..+.|+
T Consensus 418 G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~--~~~~~~~~~~I~~~nVsf~Y~~~~~~~ 495 (711)
T TIGR00958 418 GNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTG--TLAPLNLEGLIEFQDVSFSYPNRPDVP 495 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCC--CCCCCCCCCeEEEEEEEEECCCCCCCc
Confidence 9999887443 333566777778889999999999999998776543211 101111122233
Q ss_pred ----------EeeEEEEEecCCCChHHHHHhhhcCCChhh----------------------------------------
Q 047286 504 ----------FEHTVALVGENGNGKSTVISLAERFHNPEQ---------------------------------------- 533 (632)
Q Consensus 504 ----------f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------------------------------------- 533 (632)
-++++|||||||||||||+++|+|+|+|++
T Consensus 496 vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI 575 (711)
T TIGR00958 496 VLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENI 575 (711)
T ss_pred cccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHH
Confidence 334899999999999999999999999853
Q ss_pred -----------hcHHHHHHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh---------------------
Q 047286 534 -----------VIYSWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY--------------------- 581 (632)
Q Consensus 534 -----------~~~~~~~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~--------------------- 581 (632)
++.+....++++||.++|+||||.+||+|.+||||||||||||||+++
T Consensus 576 ~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~ 655 (711)
T TIGR00958 576 AYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQL 655 (711)
T ss_pred hcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHH
Confidence 111111226789999999999999999999999999999999999776
Q ss_pred ------------hccccchhhhhcCCEEEEEeCCeEeeecChHHHhccCCchhHHHH
Q 047286 582 ------------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKITDGTYASLT 626 (632)
Q Consensus 582 ------------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~ 626 (632)
|+||||++++++||+|+||++|+|+|+|+|+||+++ +|.|++|+
T Consensus 656 i~~~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~~-~~~y~~lv 711 (711)
T TIGR00958 656 LQESRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMED-QGCYKHLV 711 (711)
T ss_pred HHHhhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHhC-CCchHhcC
Confidence 789999999999999999999999999999999997 89999873
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-42 Score=392.27 Aligned_cols=276 Identities=24% Similarity=0.318 Sum_probs=210.9
Q ss_pred hhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhH------H-------
Q 047286 349 GAVGARLSTDASAVRSVVGDALGLIIQNIATIAAGLVIAFTA-WKLAFITLAVPSLTIAEGYLKKK------K------- 414 (632)
Q Consensus 349 G~l~srls~D~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~l~lv~l~~~~l~~~~~~~~~~------~------- 414 (632)
|++++|++ |.+.+++.+...+...+..+..+++.+++++.. |.++++++++.|+.+...++..+ +
T Consensus 233 g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (686)
T TIGR03797 233 GDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALALVAIAVTLVLGLLQVRKERRLLELSG 311 (686)
T ss_pred hHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999997 799999988877766666655555666666655 99988887766655443221110 0
Q ss_pred ---------------------------HHHHH---------------------------HHHHHHHhhhhHHhhcCCcCH
Q 047286 415 ---------------------------NYERL---------------------------HINAFCFFIGSKLVEHGDATF 440 (632)
Q Consensus 415 ---------------------------~~~~~---------------------------~~~~~~~~~g~~~v~~g~~s~ 440 (632)
.+.+. ....+++|+|++++..|.+|+
T Consensus 312 ~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~lti 391 (686)
T TIGR03797 312 KISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSL 391 (686)
T ss_pred HHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCH
Confidence 00000 123346788999999999999
Q ss_pred HHHHHHHHHHH--HHHHHHHHhHHhHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCcccccEEEe-------------
Q 047286 441 GEVFKFLSEFG--CFWCLESTAVAPNADKAKGSAASIFEILESKPKIDWSSKDGMTPSTVRGDIVFE------------- 505 (632)
Q Consensus 441 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~f~------------- 505 (632)
|+++++..... ..++..+......++.+..+.+|+.++++.+++.+... ..+....|.|+|+
T Consensus 392 G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~---~~~~~~~~~I~~~nvsf~Y~~~~~~v 468 (686)
T TIGR03797 392 GSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEAK---TDPGKLSGAIEVDRVTFRYRPDGPLI 468 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCc---CCCCCCCceEEEEEEEEEcCCCCccc
Confidence 99999885433 33566777778888999999999999998766543211 1111122334333
Q ss_pred -----------eEEEEEecCCCChHHHHHhhhcCCChhh-----------------------------------------
Q 047286 506 -----------HTVALVGENGNGKSTVISLAERFHNPEQ----------------------------------------- 533 (632)
Q Consensus 506 -----------~~vaIVG~SGsGKSTL~~ll~r~y~~~~----------------------------------------- 533 (632)
+++|||||||||||||+++|+|+|+|++
T Consensus 469 L~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~ 548 (686)
T TIGR03797 469 LDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIA 548 (686)
T ss_pred eeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHh
Confidence 3899999999999999999999999843
Q ss_pred ---------hcHHHHHHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh-----------------------
Q 047286 534 ---------VIYSWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY----------------------- 581 (632)
Q Consensus 534 ---------~~~~~~~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~----------------------- 581 (632)
++.+....++++||.++|+||||.+||+|.+|||||||||+||||+++
T Consensus 549 ~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~ 628 (686)
T TIGR03797 549 GGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVS 628 (686)
T ss_pred cCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHH
Confidence 111112336789999999999999999999999999999999999766
Q ss_pred ----------hccccchhhhhcCCEEEEEeCCeEeeecChHHHhccCCchhHHHHHhh
Q 047286 582 ----------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKITDGTYASLTALH 629 (632)
Q Consensus 582 ----------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~~~~ 629 (632)
|+||||++++++||+|+||++|+|+|.|+|+||+++ +|.|++|++.|
T Consensus 629 ~~L~~~~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~-~~~y~~l~~~q 685 (686)
T TIGR03797 629 ESLERLKVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAR-EGLFAQLARRQ 685 (686)
T ss_pred HHHHHhCCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhC-CcHHHHHHHhc
Confidence 789999999999999999999999999999999997 99999999876
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-42 Score=393.39 Aligned_cols=276 Identities=21% Similarity=0.309 Sum_probs=212.2
Q ss_pred hhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhH------H-------
Q 047286 349 GAVGARLSTDASAVRSVVGDALGLIIQNIATIAAGLVIAFTA-WKLAFITLAVPSLTIAEGYLKKK------K------- 414 (632)
Q Consensus 349 G~l~srls~D~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~l~lv~l~~~~l~~~~~~~~~~------~------- 414 (632)
|++++|+++| +.+++.+...+..++..++.+++.+++++.. |++++++++..|+.+...++..+ +
T Consensus 251 g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (710)
T TIGR03796 251 GDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAG 329 (710)
T ss_pred cHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988 6799988888787777777777777777766 99988888777766543322111 0
Q ss_pred ---------------------------HHHHH---------------------------HHHHHHHhhhhHHhhcCCcCH
Q 047286 415 ---------------------------NYERL---------------------------HINAFCFFIGSKLVEHGDATF 440 (632)
Q Consensus 415 ---------------------------~~~~~---------------------------~~~~~~~~~g~~~v~~g~~s~ 440 (632)
.+.+. ...++++++|++++..|.+|+
T Consensus 330 ~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~ 409 (710)
T TIGR03796 330 KLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTI 409 (710)
T ss_pred HHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCH
Confidence 00000 123356788999999999999
Q ss_pred HHHHHHHHHHH--HHHHHHHHhHHhHHHHHHHHHHHHHHHHccCCCCCCCCC---C-CCCC-CcccccEEEe--------
Q 047286 441 GEVFKFLSEFG--CFWCLESTAVAPNADKAKGSAASIFEILESKPKIDWSSK---D-GMTP-STVRGDIVFE-------- 505 (632)
Q Consensus 441 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~---~-~~~~-~~~~g~I~f~-------- 505 (632)
|+++++..... ..++..+......++.+..+.+|+.++++.+++.+.... . ...+ +...|.|+|+
T Consensus 410 G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~ 489 (710)
T TIGR03796 410 GMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSP 489 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEEEEEEEEecCC
Confidence 99999874433 335667777788889999999999999987665432110 0 0001 1122334443
Q ss_pred ----------------eEEEEEecCCCChHHHHHhhhcCCChhh------------------------------------
Q 047286 506 ----------------HTVALVGENGNGKSTVISLAERFHNPEQ------------------------------------ 533 (632)
Q Consensus 506 ----------------~~vaIVG~SGsGKSTL~~ll~r~y~~~~------------------------------------ 533 (632)
+++|||||||||||||+++|.|+|+|++
T Consensus 490 ~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi 569 (710)
T TIGR03796 490 LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTV 569 (710)
T ss_pred CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccH
Confidence 3899999999999999999999999853
Q ss_pred ---------------hcHHHHHHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh-----------------
Q 047286 534 ---------------VIYSWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY----------------- 581 (632)
Q Consensus 534 ---------------~~~~~~~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~----------------- 581 (632)
++.+....++++||.++|+||||.+||+|.+||||||||||||||+++
T Consensus 570 ~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~ 649 (710)
T TIGR03796 570 RDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPE 649 (710)
T ss_pred HHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHH
Confidence 111111336789999999999999999999999999999999999776
Q ss_pred ----------------hccccchhhhhcCCEEEEEeCCeEeeecChHHHhccCCchhHHHH
Q 047286 582 ----------------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKITDGTYASLT 626 (632)
Q Consensus 582 ----------------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~ 626 (632)
|+||||++++++||+|+||++|+|+|.|+|+||+++ +|.|++|+
T Consensus 650 te~~i~~~l~~~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~~-~~~y~~l~ 709 (710)
T TIGR03796 650 TEKIIDDNLRRRGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAV-GGAYARLI 709 (710)
T ss_pred HHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHHHc-CCcHHHHh
Confidence 899999999999999999999999999999999997 99999997
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=392.02 Aligned_cols=276 Identities=24% Similarity=0.303 Sum_probs=209.5
Q ss_pred hhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhH------H-------
Q 047286 349 GAVGARLSTDASAVRSVVGDALGLIIQNIATIAAGLVIAFTA-WKLAFITLAVPSLTIAEGYLKKK------K------- 414 (632)
Q Consensus 349 G~l~srls~D~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~l~lv~l~~~~l~~~~~~~~~~------~------- 414 (632)
|++++|++ |.+.+++.+...+..++..+..+++.+++++.. |++++++++..|+++...++..+ +
T Consensus 253 G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 331 (708)
T TIGR01193 253 GEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANA 331 (708)
T ss_pred hHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998 899999888777666666655555555555555 99998888777765543322111 0
Q ss_pred ---------------------------HHHHH---------------------------HHHHHHHhhhhHHhhcCCcCH
Q 047286 415 ---------------------------NYERL---------------------------HINAFCFFIGSKLVEHGDATF 440 (632)
Q Consensus 415 ---------------------------~~~~~---------------------------~~~~~~~~~g~~~v~~g~~s~ 440 (632)
.+.+. ....+++++|++++..|.+|+
T Consensus 332 ~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~ 411 (708)
T TIGR01193 332 VLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTL 411 (708)
T ss_pred HHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCH
Confidence 00000 112346788999999999999
Q ss_pred HHHHHHHHHHH--HHHHHHHHhHHhHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCcccccEEEe-------------
Q 047286 441 GEVFKFLSEFG--CFWCLESTAVAPNADKAKGSAASIFEILESKPKIDWSSKDGMTPSTVRGDIVFE------------- 505 (632)
Q Consensus 441 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~f~------------- 505 (632)
|+++++..... ..++..+......++.+..+.+|+.++++.+++.+.... ....+...|.|+|+
T Consensus 412 G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~-~~~~~~~~~~I~~~~vsf~y~~~~~iL 490 (708)
T TIGR01193 412 GQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKK-RTELNNLNGDIVINDVSYSYGYGSNIL 490 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccc-ccCCCCCCCcEEEEEEEEEcCCCCcce
Confidence 99999884433 345677778888899999999999999987765432110 00011122334443
Q ss_pred ----------eEEEEEecCCCChHHHHHhhhcCCChhh------------------------------------------
Q 047286 506 ----------HTVALVGENGNGKSTVISLAERFHNPEQ------------------------------------------ 533 (632)
Q Consensus 506 ----------~~vaIVG~SGsGKSTL~~ll~r~y~~~~------------------------------------------ 533 (632)
+++|||||||||||||+++|.|+|+|++
T Consensus 491 ~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l 570 (708)
T TIGR01193 491 SDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLL 570 (708)
T ss_pred eceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhc
Confidence 3899999999999999999999999843
Q ss_pred ----------hcHHHHHHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh----------------------
Q 047286 534 ----------VIYSWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY---------------------- 581 (632)
Q Consensus 534 ----------~~~~~~~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~---------------------- 581 (632)
++.+....++++||.++|+||||.|||+|.+|||||||||+||||+++
T Consensus 571 ~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i 650 (708)
T TIGR01193 571 GAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKI 650 (708)
T ss_pred cCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHH
Confidence 001111236789999999999999999999999999999999999766
Q ss_pred ------------hccccchhhhhcCCEEEEEeCCeEeeecChHHHhccCCchhHHHHH
Q 047286 582 ------------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKITDGTYASLTA 627 (632)
Q Consensus 582 ------------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~~ 627 (632)
|+||||+++++.||+|+||++|+|+|.|+|+||+++ +|.|++|++
T Consensus 651 ~~~L~~~~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~~-~~~y~~l~~ 707 (708)
T TIGR01193 651 VNNLLNLQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDR-NGFYASLIH 707 (708)
T ss_pred HHHHHHhcCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHhc-CCcHHHHhh
Confidence 789999999999999999999999999999999997 999999986
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-43 Score=376.87 Aligned_cols=254 Identities=39% Similarity=0.593 Sum_probs=230.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------------------------------------
Q 047286 2 AACLPAIVIAGGITATVVAKLSCRGQIAYAEAEMLLSTQLEP-------------------------------------- 43 (632)
Q Consensus 2 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-------------------------------------- 43 (632)
++.+|+++++..+++++.++++++.|++.++++.+++|.+.+
T Consensus 295 ~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~~f 374 (716)
T KOG0058|consen 295 LIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYGIF 374 (716)
T ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 567899999999999999999999999999999999999831
Q ss_pred ------------------------CCcccHHHH-----------------HHHHHHHHHHHHHHHHHHHHhccCCCCCCC
Q 047286 44 ------------------------LEDMPLGQT-----------------SLNVNAFAAGQAAACKMFETIERIPKINPY 82 (632)
Q Consensus 44 ------------------------~~~~~~~~~-----------------~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~ 82 (632)
.|.++.|++ +..+..+++|..|++|+||++|++|.++..
T Consensus 375 ~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~ 454 (716)
T KOG0058|consen 375 FGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLT 454 (716)
T ss_pred HhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCC
Confidence 344555543 456788999999999999999999976432
Q ss_pred C-----------------------------CcEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHH----------
Q 047286 83 D-----------------------------NRFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEA---------- 123 (632)
Q Consensus 83 ~-----------------------------~~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~---------- 123 (632)
. +++||+|+|||++|+||||||||||++++|. ++|+|..
T Consensus 455 G~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~--rfY~PtsG~IllDG~~i 532 (716)
T KOG0058|consen 455 GTLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLL--RFYDPTSGRILLDGVPI 532 (716)
T ss_pred CccccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHH--HhcCCCCCeEEECCeeh
Confidence 1 0199999999999999999999999999998 7777653
Q ss_pred -------hhcceEEEcccCcccccccccccccccCCCCCCHHHHHHHHHHccchhhHhhCCccccccc------------
Q 047286 124 -------EQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV------------ 184 (632)
Q Consensus 124 -------~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~~~v------------ 184 (632)
+|++||+|.|||.+|.+++++ ||.||.++.++|++..+++.++.++||..+|+|++|.|
T Consensus 533 ~~~~~~~lr~~Ig~V~QEPvLFs~sI~e--NI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQK 610 (716)
T KOG0058|consen 533 SDINHKYLRRKIGLVGQEPVLFSGSIRE--NIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQK 610 (716)
T ss_pred hhcCHHHHHHHeeeeeccceeecccHHH--HHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHH
Confidence 789999999999999999999 89999999999999999999999999999999999988
Q ss_pred --------------------ccCCCCHHHHHHHHHHHHHHhCCceEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHh
Q 047286 185 --------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELI 244 (632)
Q Consensus 185 --------------------~ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~ 244 (632)
+|||||.++|..++++|.+..+++|||+|+|+++++++||+|+++++|+++|.|+|+|++
T Consensus 611 QRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl 690 (716)
T KOG0058|consen 611 QRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDELL 690 (716)
T ss_pred HHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHHHh
Confidence 399999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcHHHHHHHHHh
Q 047286 245 EDPEGAYSQLVRLQE 259 (632)
Q Consensus 245 ~~~~~~~~~~~~~~~ 259 (632)
..+++.|.++.+.|.
T Consensus 691 ~~~~gly~~Lv~~q~ 705 (716)
T KOG0058|consen 691 SKPNGLYAKLVQRQL 705 (716)
T ss_pred hCcccHHHHHHHHhc
Confidence 998889999987664
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=360.41 Aligned_cols=200 Identities=31% Similarity=0.388 Sum_probs=165.8
Q ss_pred hHHhhcCCcCHHHHHHHHHHHH--HHHHHHHHhHHhHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCcccccEEEee-
Q 047286 430 SKLVEHGDATFGEVFKFLSEFG--CFWCLESTAVAPNADKAKGSAASIFEILESKPKIDWSSKDGMTPSTVRGDIVFEH- 506 (632)
Q Consensus 430 ~~~v~~g~~s~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~f~~- 506 (632)
.+++.++.+++|+++.|..++. ..++--.......+++.....++.+++++++++.... ++..+....+|.|+|+|
T Consensus 465 aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~-P~a~pl~~~~G~i~fsnv 543 (790)
T KOG0056|consen 465 AYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDL-PGAPPLKVTQGKIEFSNV 543 (790)
T ss_pred eeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcC-CCCCCccccCCeEEEEEe
Confidence 3566788999999888774332 2234445556667888888999999999998887532 23334445578888887
Q ss_pred ----------------------EEEEEecCCCChHHHHHhhhcCCChhh-------------------------------
Q 047286 507 ----------------------TVALVGENGNGKSTVISLAERFHNPEQ------------------------------- 533 (632)
Q Consensus 507 ----------------------~vaIVG~SGsGKSTL~~ll~r~y~~~~------------------------------- 533 (632)
++|+|||||+||||++++|+||||.++
T Consensus 544 tF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvL 623 (790)
T KOG0056|consen 544 TFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVL 623 (790)
T ss_pred EEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCccee
Confidence 799999999999999999999998743
Q ss_pred --------------------hcHHHHHHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh------------
Q 047286 534 --------------------VIYSWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY------------ 581 (632)
Q Consensus 534 --------------------~~~~~~~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~------------ 581 (632)
+..+...+++||-|.++|+||+|.|||+|-.||||||||+||||++++
T Consensus 624 FNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATS 703 (790)
T KOG0056|consen 624 FNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATS 703 (790)
T ss_pred ecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhh
Confidence 111222347899999999999999999999999999999999999877
Q ss_pred -----------------------hccccchhhhhcCCEEEEEeCCeEeeecChHHHhccCCchhHHHHHhhh
Q 047286 582 -----------------------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKITDGTYASLTALHM 630 (632)
Q Consensus 582 -----------------------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~~~~~ 630 (632)
|++||||||+-|||.|+|+++|+|+|+|+|+||+++.+|.|++||+.|.
T Consensus 704 ALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG~Ya~MWq~qq 775 (790)
T KOG0056|consen 704 ALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGAYADMWQAQQ 775 (790)
T ss_pred hcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCCcHHHHHHHHH
Confidence 8999999999999999999999999999999999988899999997664
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-43 Score=371.37 Aligned_cols=171 Identities=21% Similarity=0.331 Sum_probs=130.9
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCc-------------------HH----hhcceEEEcccCcc-ccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAP-------------------EA----EQEKIGLVSKEPIF-LFC 140 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~-------------------~~----~r~~i~~v~Q~~~~-~~~ 140 (632)
++||+|.+||++||||+|||||||+.+.|.|+..+++ .+ ..+.|+|+||+|.- ++.
T Consensus 27 ~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP 106 (539)
T COG1123 27 DVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNP 106 (539)
T ss_pred cceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCc
Confidence 4999999999999999999999999999986543331 00 13579999999852 333
Q ss_pred ccccccccc----cCC---CCCCHHHHHHHHHHccchhh------HhhCCccccccc-----------------ccCCCC
Q 047286 141 DFNEGQYIP----YGK---QNASDEHIRPAVQLANAEKS------IDKLPLGLDTVV-----------------ATNAVD 190 (632)
Q Consensus 141 ~~~~~~~i~----~~~---~~~~~~~~~~~~~~~~l~~~------i~~l~~g~~~~v-----------------~ts~LD 190 (632)
.++..+.+. ... .....++..+.++.+++.+. ..+||+|+.+++ +|.+||
T Consensus 107 ~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLD 186 (539)
T COG1123 107 VMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALD 186 (539)
T ss_pred hhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccC
Confidence 222211111 111 11234556677788877543 445778988887 399999
Q ss_pred HHHHHHHHHHHHHHh--CCceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcCCCcHHHHHH
Q 047286 191 AQSERIVQAAMVKLV--TNQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLV 255 (632)
Q Consensus 191 ~~~~~~i~~~l~~~~--~~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~ 255 (632)
+.++.+|.+.|+++. .+.++|+||||+..+.+ ||||+||++|+++|.|+.+++++++.++|.+..
T Consensus 187 vt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~~p~hpYT~~L 254 (539)
T COG1123 187 VTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILSNPQHPYTRGL 254 (539)
T ss_pred HHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHHHHHhccCCcccHHH
Confidence 999999999999986 47899999999999876 999999999999999999999999888887543
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-41 Score=375.68 Aligned_cols=276 Identities=21% Similarity=0.254 Sum_probs=206.0
Q ss_pred hhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH--HHHHhH-----HH----
Q 047286 348 IGAVGARLSTDASAVRSVVGDALGLIIQNIATIAAGLVIAFTA-WKLAFITLAVPSLTIAE--GYLKKK-----KN---- 415 (632)
Q Consensus 348 ~G~l~srls~D~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~l~lv~l~~~~l~~~~--~~~~~~-----~~---- 415 (632)
.|++++|+++|++.++..+...+..++..++.+++++++++.. |+++++++++.|+++.. .+..++ +.
T Consensus 116 ~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (574)
T PRK11160 116 QGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHL 195 (574)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3999999999999999999999999998888888888877766 99988776655543221 111110 00
Q ss_pred ------------------------------HHHH---------------------------HHHHHHHhhhhHHhhcCCc
Q 047286 416 ------------------------------YERL---------------------------HINAFCFFIGSKLVEHGDA 438 (632)
Q Consensus 416 ------------------------------~~~~---------------------------~~~~~~~~~g~~~v~~g~~ 438 (632)
+.+. ...++++++|+.++ .|.+
T Consensus 196 ~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~-~g~~ 274 (574)
T PRK11160 196 RAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLTGLSQALMILANGLTVVLMLWLAAGGV-GGNA 274 (574)
T ss_pred HHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccc
Confidence 0000 11223456777774 7899
Q ss_pred CHHHHHHHHHHHH---HHHHHHHHhHHhHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCcccccEE------------
Q 047286 439 TFGEVFKFLSEFG---CFWCLESTAVAPNADKAKGSAASIFEILESKPKIDWSSKDGMTPSTVRGDIV------------ 503 (632)
Q Consensus 439 s~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~------------ 503 (632)
++|.+++++.... ..++..+......++++..+.+|+.++++.+++.+.+.... ..+..+.|+
T Consensus 275 t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~~~~~~--~~~~~~~i~~~~v~f~y~~~~ 352 (574)
T PRK11160 275 QPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVTFPTTST--AAADQVSLTLNNVSFTYPDQP 352 (574)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcccC--CCCCCCeEEEEEEEEECCCCC
Confidence 9999888763321 12344455666778888999999999998876532211100 001112233
Q ss_pred ------------EeeEEEEEecCCCChHHHHHhhhcCCChhh--------------------------------------
Q 047286 504 ------------FEHTVALVGENGNGKSTVISLAERFHNPEQ-------------------------------------- 533 (632)
Q Consensus 504 ------------f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~-------------------------------------- 533 (632)
.++++|||||||||||||+++|+|+|+|++
T Consensus 353 ~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ 432 (574)
T PRK11160 353 QPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRD 432 (574)
T ss_pred CcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHH
Confidence 333899999999999999999999999853
Q ss_pred -------------hcHHHHHHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh-------------------
Q 047286 534 -------------VIYSWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY------------------- 581 (632)
Q Consensus 534 -------------~~~~~~~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~------------------- 581 (632)
++.+....++++|+++ |+||||.|||+|.+||||||||||||||+++
T Consensus 433 Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~ 511 (574)
T PRK11160 433 NLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETE 511 (574)
T ss_pred HhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 0111112267899999 9999999999999999999999999999766
Q ss_pred ----------------hccccchhhhhcCCEEEEEeCCeEeeecChHHHhccCCchhHHHHHh
Q 047286 582 ----------------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKITDGTYASLTAL 628 (632)
Q Consensus 582 ----------------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~~~ 628 (632)
+++|||++++++||+|++|++|+|+|+|+|+||+++ +|.|++||+.
T Consensus 512 ~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~g~y~~l~~~ 573 (574)
T PRK11160 512 RQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQ-QGRYYQLKQR 573 (574)
T ss_pred HHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHHHHhc-CcHHHHHHhh
Confidence 789999999999999999999999999999999997 9999999874
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=376.63 Aligned_cols=282 Identities=26% Similarity=0.349 Sum_probs=214.3
Q ss_pred hhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhH------H-------
Q 047286 349 GAVGARLSTDASAVRSVVGDALGLIIQNIATIAAGLVIAFTA-WKLAFITLAVPSLTIAEGYLKKK------K------- 414 (632)
Q Consensus 349 G~l~srls~D~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~l~lv~l~~~~l~~~~~~~~~~------~------- 414 (632)
|++.+|+++|++.+++.+...+..++..++.+++.+++++.. |.++++++++.|+.+...+...+ +
T Consensus 122 g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 201 (582)
T PRK11176 122 GTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMG 201 (582)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888888888888888888777666 98888887776665443321111 0
Q ss_pred ---------------------------HHHHH---------------------------HHHHHHHhhhhHHhhcCCcCH
Q 047286 415 ---------------------------NYERL---------------------------HINAFCFFIGSKLVEHGDATF 440 (632)
Q Consensus 415 ---------------------------~~~~~---------------------------~~~~~~~~~g~~~v~~g~~s~ 440 (632)
.+++. .....++++|+.++..|.+++
T Consensus 202 ~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~ 281 (582)
T PRK11176 202 QVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDTLTA 281 (582)
T ss_pred HHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCH
Confidence 00000 112345677888999999999
Q ss_pred HHHHHHHHH--HHHHHHHHHHhHHhHHHHHHHHHHHHHHHHccCCCCCCCCCCC------C---------------CCCc
Q 047286 441 GEVFKFLSE--FGCFWCLESTAVAPNADKAKGSAASIFEILESKPKIDWSSKDG------M---------------TPST 497 (632)
Q Consensus 441 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~------~---------------~~~~ 497 (632)
|+++++... ....++..........+.+..+.+|+.++++.+++.+...... . ....
T Consensus 282 g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~y~~~~~~il~~ 361 (582)
T PRK11176 282 GTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEGKRVIERAKGDIEFRNVTFTYPGKEVPALRN 361 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCcCCCCCCCeEEEEEEEEecCCCCCccccC
Confidence 998776633 3334566777777888899999999999987665422110000 0 0011
Q ss_pred ccccEEEeeEEEEEecCCCChHHHHHhhhcCCChhh--------------------------------------------
Q 047286 498 VRGDIVFEHTVALVGENGNGKSTVISLAERFHNPEQ-------------------------------------------- 533 (632)
Q Consensus 498 ~~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~-------------------------------------------- 533 (632)
.+-+|+.++++||||+||||||||+++|+|+|+|++
T Consensus 362 i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~ 441 (582)
T PRK11176 362 INFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYAR 441 (582)
T ss_pred ceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCC
Confidence 111233344899999999999999999999999843
Q ss_pred --------hcHHHHHHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh------------------------
Q 047286 534 --------VIYSWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY------------------------ 581 (632)
Q Consensus 534 --------~~~~~~~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~------------------------ 581 (632)
++.+....++++|+.+||+||||.+||+|.+|||||||||+||||+++
T Consensus 442 ~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~ 521 (582)
T PRK11176 442 TEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQA 521 (582)
T ss_pred CCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHH
Confidence 001111236789999999999999999999999999999999999776
Q ss_pred -----------hccccchhhhhcCCEEEEEeCCeEeeecChHHHhccCCchhHHHHHhhhc
Q 047286 582 -----------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKITDGTYASLTALHMS 631 (632)
Q Consensus 582 -----------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~~~~~~ 631 (632)
|+||||+++++.||+|++|++|+|+|+|+|++|+++ +|.|++|++.|.+
T Consensus 522 ~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~~-~~~y~~l~~~~~~ 581 (582)
T PRK11176 522 ALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQ-NGVYAQLHKMQFG 581 (582)
T ss_pred HHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHhC-CChHHHHHHHHhc
Confidence 789999999999999999999999999999999997 8999999998764
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=342.29 Aligned_cols=199 Identities=30% Similarity=0.371 Sum_probs=160.3
Q ss_pred hhhhHHhhcCCcCHHHHHHHHH--HHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCC-cccccEE
Q 047286 427 FIGSKLVEHGDATFGEVFKFLS--EFGCFWCLESTAVAPNADKAKGSAASIFEILESKPKIDWSSKDGMTPS-TVRGDIV 503 (632)
Q Consensus 427 ~~g~~~v~~g~~s~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~-~~~g~I~ 503 (632)
..+...+.+|.+++|+++.... .....+..-......++.++....++.+++++.+.+..... +...+. ...|.|.
T Consensus 186 ~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~~~v~d~p-da~~L~~~~~g~v~ 264 (497)
T COG5265 186 TMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSDAP-DAPPLWPVRLGAVA 264 (497)
T ss_pred hhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccchhhccCC-CCccccccccceEE
Confidence 3455678889999999886652 22333344445555677888889999999998877665322 122212 3346677
Q ss_pred Eee-----------------------EEEEEecCCCChHHHHHhhhcCCChhh---------hc----------------
Q 047286 504 FEH-----------------------TVALVGENGNGKSTVISLAERFHNPEQ---------VI---------------- 535 (632)
Q Consensus 504 f~~-----------------------~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~~---------------- 535 (632)
|.+ ++||||+||+||||+.+||+||||+++ ++
T Consensus 265 F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQ 344 (497)
T COG5265 265 FINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQ 344 (497)
T ss_pred EEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcc
Confidence 776 799999999999999999999999854 11
Q ss_pred --------------------------HHHHHHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh--------
Q 047286 536 --------------------------YSWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY-------- 581 (632)
Q Consensus 536 --------------------------~~~~~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~-------- 581 (632)
.+....++|+||..+|+||||.|||+|-.||||||||+||||++++
T Consensus 345 DtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~d 424 (497)
T COG5265 345 DTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILD 424 (497)
T ss_pred cceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEe
Confidence 1111337889999999999999999999999999999999999877
Q ss_pred ---------------------------hccccchhhhhcCCEEEEEeCCeEeeecChHHHhccCCchhHHHHH
Q 047286 582 ---------------------------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKITDGTYASLTA 627 (632)
Q Consensus 582 ---------------------------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~~ 627 (632)
++|||||+|+-+||.|+||++|+|+|+|||+||+++ +|.|++||.
T Consensus 425 eatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg~h~~ll~~-~g~ya~mw~ 496 (497)
T COG5265 425 EATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAA-GGLYAEMWR 496 (497)
T ss_pred hhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHHHHHc-CChHHHHhc
Confidence 899999999999999999999999999999999998 999999995
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-40 Score=377.79 Aligned_cols=278 Identities=24% Similarity=0.324 Sum_probs=210.3
Q ss_pred hhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh-----H--H------
Q 047286 349 GAVGARLSTDASAVRSVVGDALGLIIQNIATIAAGLVIAFTA-WKLAFITLAVPSLTIAEGYLKK-----K--K------ 414 (632)
Q Consensus 349 G~l~srls~D~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~l~lv~l~~~~l~~~~~~~~~-----~--~------ 414 (632)
|++.+|+ +|++.+++.+...+..++..++.+++.+++++.. |.+++++++..|+++...++.. . +
T Consensus 236 g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 314 (694)
T TIGR01846 236 GDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVIGSLVCYALLSVFVGPILRKRVEDKFERSA 314 (694)
T ss_pred HHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999 6999999988776666665555444445555555 9998888777766554332111 0 0
Q ss_pred ---------------------------HHHHH---------------------------HHHHHHHhhhhHHhhcCCcCH
Q 047286 415 ---------------------------NYERL---------------------------HINAFCFFIGSKLVEHGDATF 440 (632)
Q Consensus 415 ---------------------------~~~~~---------------------------~~~~~~~~~g~~~v~~g~~s~ 440 (632)
.+.+. ...++++|+|+.++..|.+|+
T Consensus 315 ~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~ 394 (694)
T TIGR01846 315 AATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGAHLVIGGALSP 394 (694)
T ss_pred HHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCH
Confidence 00000 123346788999999999999
Q ss_pred HHHHHHHHHHH--HHHHHHHHhHHhHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCcccccEEE--------------
Q 047286 441 GEVFKFLSEFG--CFWCLESTAVAPNADKAKGSAASIFEILESKPKIDWSSKDGMTPSTVRGDIVF-------------- 504 (632)
Q Consensus 441 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~f-------------- 504 (632)
|+++++..... ..++.........++.+..+.+|+.++++.+++.+... ....+...+.|+|
T Consensus 395 G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~--~~~~~~~~~~i~~~~vsf~y~~~~~~i 472 (694)
T TIGR01846 395 GQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSAG--LAALPELRGAITFENIRFRYAPDSPEV 472 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCCC--CCCCCCCCCeEEEEEEEEEcCCCCccc
Confidence 99998874433 34567777778889999999999999998776543211 0001112233333
Q ss_pred ----------eeEEEEEecCCCChHHHHHhhhcCCChhh------------hc---------------------------
Q 047286 505 ----------EHTVALVGENGNGKSTVISLAERFHNPEQ------------VI--------------------------- 535 (632)
Q Consensus 505 ----------~~~vaIVG~SGsGKSTL~~ll~r~y~~~~------------~~--------------------------- 535 (632)
++++||||+||||||||+++|.|+|+|++ ++
T Consensus 473 l~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~ 552 (694)
T TIGR01846 473 LSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIA 552 (694)
T ss_pred cccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHh
Confidence 33899999999999999999999999853 01
Q ss_pred ------------HHHHHHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh----------------------
Q 047286 536 ------------YSWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY---------------------- 581 (632)
Q Consensus 536 ------------~~~~~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~---------------------- 581 (632)
.+....+++++|.++|+||||.+||+|.+|||||||||+||||+++
T Consensus 553 ~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i 632 (694)
T TIGR01846 553 LCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALI 632 (694)
T ss_pred cCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHH
Confidence 1111226789999999999999999999999999999999999766
Q ss_pred -------------hccccchhhhhcCCEEEEEeCCeEeeecChHHHhccCCchhHHHHHhhh
Q 047286 582 -------------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKITDGTYASLTALHM 630 (632)
Q Consensus 582 -------------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~~~~~ 630 (632)
+++|||+++++.||+|++|++|+|+|+|+|+||+++ +|.|++|++.|.
T Consensus 633 ~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~-~~~y~~l~~~~~ 693 (694)
T TIGR01846 633 MRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLAL-QGLYARLWQQQS 693 (694)
T ss_pred HHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHc-CChHHHHHHhhc
Confidence 789999999999999999999999999999999997 999999999875
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=379.03 Aligned_cols=268 Identities=22% Similarity=0.321 Sum_probs=202.3
Q ss_pred hhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhH------H------
Q 047286 348 IGAVGARLSTDASAVRSVVGDALGLIIQNIATIAAGLVIAFTA-WKLAFITLAVPSLTIAEGYLKKK------K------ 414 (632)
Q Consensus 348 ~G~l~srls~D~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~l~lv~l~~~~l~~~~~~~~~~------~------ 414 (632)
.|++++|+ +|++.+++.+...+...+..+..+++.+++++.. |.+++++++..|+.+...++..+ +
T Consensus 242 ~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 320 (694)
T TIGR03375 242 VGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRES 320 (694)
T ss_pred hhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 39999999 7999999998877666666665555555556655 99988887777766544322111 0
Q ss_pred ----------------------------HHHHH---------------------------HHHHHHHhhhhHHhhcCCcC
Q 047286 415 ----------------------------NYERL---------------------------HINAFCFFIGSKLVEHGDAT 439 (632)
Q Consensus 415 ----------------------------~~~~~---------------------------~~~~~~~~~g~~~v~~g~~s 439 (632)
.+.+. ...+.++++|++++.+|.+|
T Consensus 321 ~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls 400 (694)
T TIGR03375 321 AQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVGVYLISDGELT 400 (694)
T ss_pred HHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 00000 12334678899999999999
Q ss_pred HHHHHHHHHHHH--HHHHHHHHhHHhHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCcccccEEEe------------
Q 047286 440 FGEVFKFLSEFG--CFWCLESTAVAPNADKAKGSAASIFEILESKPKIDWSSKDGMTPSTVRGDIVFE------------ 505 (632)
Q Consensus 440 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~f~------------ 505 (632)
+|++++++.... ..++..+......++.+..+.+|+.++++.+++.+... .....+...+.|+|+
T Consensus 401 ~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~-~~~~~~~~~~~I~~~~vsf~Y~~~~~~ 479 (694)
T TIGR03375 401 MGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGT-RFLHRPRLQGEIEFRNVSFAYPGQETP 479 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC-CCCCCCCccceEEEEEEEEEeCCCCcc
Confidence 999999885443 34566777778889999999999999998876532211 101111122334443
Q ss_pred ------------eEEEEEecCCCChHHHHHhhhcCCChhh----------------------------------------
Q 047286 506 ------------HTVALVGENGNGKSTVISLAERFHNPEQ---------------------------------------- 533 (632)
Q Consensus 506 ------------~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------------------------------------- 533 (632)
+++||||+||||||||+++|.|+|+|++
T Consensus 480 vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi 559 (694)
T TIGR03375 480 ALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNI 559 (694)
T ss_pred ceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHH
Confidence 3899999999999999999999999843
Q ss_pred -----------hcHHHHHHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh---------------------
Q 047286 534 -----------VIYSWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY--------------------- 581 (632)
Q Consensus 534 -----------~~~~~~~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~--------------------- 581 (632)
++.+....++++||.+||+||||.+||+|.+|||||||||+||||+++
T Consensus 560 ~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~ 639 (694)
T TIGR03375 560 ALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEER 639 (694)
T ss_pred hCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHH
Confidence 111111236789999999999999999999999999999999999766
Q ss_pred --------------hccccchhhhhcCCEEEEEeCCeEeeecChHHHhcc
Q 047286 582 --------------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKI 617 (632)
Q Consensus 582 --------------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~ 617 (632)
++||||+++++.||+|+||++|+|+|+|+|+||+++
T Consensus 640 i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 640 FKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred HHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 789999999999999999999999999999999975
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=368.86 Aligned_cols=280 Identities=21% Similarity=0.285 Sum_probs=205.6
Q ss_pred hhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhH--------------
Q 047286 349 GAVGARLSTDASAVRSVVGDALGLIIQNIATIAAGLVIAFTA-WKLAFITLAVPSLTIAEGYLKKK-------------- 413 (632)
Q Consensus 349 G~l~srls~D~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~l~lv~l~~~~l~~~~~~~~~~-------------- 413 (632)
|++++|+++|++.+++.+...+..++..+..+++.+++++.. |.+++++++..|+.+...++..+
T Consensus 122 g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 201 (592)
T PRK10790 122 GQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLA 201 (592)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998888888887777777766665 88887776666654332211100
Q ss_pred ----------------HHH----------HH-------H-------HH--------------HHHHHhhhhHHhhcCCcC
Q 047286 414 ----------------KNY----------ER-------L-------HI--------------NAFCFFIGSKLVEHGDAT 439 (632)
Q Consensus 414 ----------------~~~----------~~-------~-------~~--------------~~~~~~~g~~~v~~g~~s 439 (632)
+.+ .+ . .. ...++++++. +..|.++
T Consensus 202 ~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is 280 (592)
T PRK10790 202 DINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRPLLSLFSALILCGLLMLFGF-SASGTIE 280 (592)
T ss_pred HHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcC
Confidence 000 00 0 00 0011122232 5689999
Q ss_pred HHHHHHHHHHH--HHHHHHHHHhHHhHHHHHHHHHHHHHHHHccCCCCCCCCCCC-----CC--------------CCcc
Q 047286 440 FGEVFKFLSEF--GCFWCLESTAVAPNADKAKGSAASIFEILESKPKIDWSSKDG-----MT--------------PSTV 498 (632)
Q Consensus 440 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~-----~~--------------~~~~ 498 (632)
+|.++++.... ...++.........++.+..+.+|+.++++.+++........ .. ..+.
T Consensus 281 ~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~il~~i 360 (592)
T PRK10790 281 VGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYGNDDRPLQSGRIDIDNVSFAYRDDNLVLQNI 360 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCCccCCCCCeEEEEEEEEEeCCCCceeece
Confidence 99998887433 334566777778888999999999999997654321110000 00 0001
Q ss_pred cccEEEeeEEEEEecCCCChHHHHHhhhcCCChhh---------------------------------------------
Q 047286 499 RGDIVFEHTVALVGENGNGKSTVISLAERFHNPEQ--------------------------------------------- 533 (632)
Q Consensus 499 ~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~--------------------------------------------- 533 (632)
+-+|+.++++||||+||||||||+++|.|+|+|++
T Consensus 361 ~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~ 440 (592)
T PRK10790 361 NLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRD 440 (592)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCCC
Confidence 11222334899999999999999999999999853
Q ss_pred -----hcHHHHHHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh---------------------------
Q 047286 534 -----VIYSWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY--------------------------- 581 (632)
Q Consensus 534 -----~~~~~~~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~--------------------------- 581 (632)
++.+....+++++|.+||+||||.+||+|.+||||||||||||||+++
T Consensus 441 ~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~ 520 (592)
T PRK10790 441 ISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALA 520 (592)
T ss_pred CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 011111236789999999999999999999999999999999999766
Q ss_pred --------hccccchhhhhcCCEEEEEeCCeEeeecChHHHhccCCchhHHHHHhhh
Q 047286 582 --------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKITDGTYASLTALHM 630 (632)
Q Consensus 582 --------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~~~~~ 630 (632)
|++|||+++++.||+|++|++|+|+|.|||+||+++ ++.|+++++.|.
T Consensus 521 ~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~-~~~y~~l~~~~~ 576 (592)
T PRK10790 521 AVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAA-QGRYWQMYQLQL 576 (592)
T ss_pred HHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhC-CCHHHHHHHHHh
Confidence 789999999999999999999999999999999997 999999998774
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=344.34 Aligned_cols=281 Identities=24% Similarity=0.214 Sum_probs=212.1
Q ss_pred hhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhH---H---------
Q 047286 348 IGAVGARLSTDASAVRSVVGDALGLIIQNIATIAAGLVIAFTA-WKLAFITLAVPSLTIAEGYLKKK---K--------- 414 (632)
Q Consensus 348 ~G~l~srls~D~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~l~lv~l~~~~l~~~~~~~~~~---~--------- 414 (632)
.|+..+.++..++.++..+...++.+..........++.+++. |.-+++++.+.|++.+.+++... +
T Consensus 96 ~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilvg~~a~~~s~~~~~~~ 175 (559)
T COG4988 96 AGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILVGLAAKDASEKQFSAL 175 (559)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4999999999999999999999999999888777777666665 99988888887776554432111 0
Q ss_pred ------------------HH-----------------HHH--------------------HHHHHHHhhhhHHhhc-CCc
Q 047286 415 ------------------NY-----------------ERL--------------------HINAFCFFIGSKLVEH-GDA 438 (632)
Q Consensus 415 ------------------~~-----------------~~~--------------------~~~~~~~~~g~~~v~~-g~~ 438 (632)
.+ ++. .+.+++..+.+..... |.+
T Consensus 176 ~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlvAv~~g~~ll~~G~l 255 (559)
T COG4988 176 ARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIGFRLLGEGDL 255 (559)
T ss_pred HHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 00 000 1122222333333344 889
Q ss_pred CHHHHHHHH--HHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHccCCCCCCCCCC-------C----------------C
Q 047286 439 TFGEVFKFL--SEFGCFWCLESTAVAPNADKAKGSAASIFEILESKPKIDWSSKD-------G----------------M 493 (632)
Q Consensus 439 s~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~-------~----------------~ 493 (632)
++...+.++ +.-.+.++.+..+.++..+.+..+.+.++.+++.|++....... . .
T Consensus 256 tl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~ei~~~~l~~~y~~g~~ 335 (559)
T COG4988 256 TLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDGKP 335 (559)
T ss_pred cHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCCceeeecceEEecCCCCc
Confidence 988777666 33334568899999999999999999999999887653221100 0 0
Q ss_pred CCCcccccEEEeeEEEEEecCCCChHHHHHhhhcCCChhh----------------------------------------
Q 047286 494 TPSTVRGDIVFEHTVALVGENGNGKSTVISLAERFHNPEQ---------------------------------------- 533 (632)
Q Consensus 494 ~~~~~~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------------------------------------- 533 (632)
.+.++.-+++-++++||||+||||||||+++|.||+.|++
T Consensus 336 ~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi 415 (559)
T COG4988 336 ALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENI 415 (559)
T ss_pred ccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHh
Confidence 0111122344455899999999999999999999998743
Q ss_pred -----------hcHHHHHHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh---------------------
Q 047286 534 -----------VIYSWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY--------------------- 581 (632)
Q Consensus 534 -----------~~~~~~~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~--------------------- 581 (632)
++.+....++.+|+.. |+|+||.+||+|.+|||||+||+++|||+++
T Consensus 416 ~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~ 494 (559)
T COG4988 416 LLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQI 494 (559)
T ss_pred hccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHH
Confidence 1111112366799999 9999999999999999999999999999766
Q ss_pred --------------hccccchhhhhcCCEEEEEeCCeEeeecChHHHhccCCchhHHHHHhhh
Q 047286 582 --------------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKITDGTYASLTALHM 630 (632)
Q Consensus 582 --------------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~~~~~ 630 (632)
+++|||++.+++||+|+|||+|+++|+|+|+||+++ +|.|++|+..|.
T Consensus 495 i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~-~~~y~~l~~~q~ 556 (559)
T COG4988 495 ILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEK-QGLYANLLKQQE 556 (559)
T ss_pred HHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhc-CcHHHHHHHHHh
Confidence 899999999999999999999999999999999997 999999998875
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-39 Score=363.20 Aligned_cols=282 Identities=27% Similarity=0.390 Sum_probs=217.8
Q ss_pred hhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhH------H-------
Q 047286 349 GAVGARLSTDASAVRSVVGDALGLIIQNIATIAAGLVIAFTA-WKLAFITLAVPSLTIAEGYLKKK------K------- 414 (632)
Q Consensus 349 G~l~srls~D~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~l~lv~l~~~~l~~~~~~~~~~------~------- 414 (632)
|++.+|+++|++.+++.+...+..++..++.+++.+++++.. |.++++++++.|+.+...++..+ +
T Consensus 111 g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 190 (571)
T TIGR02203 111 GTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKRLRRISKEIQNSMG 190 (571)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998999898888888888877766 99998888777776554432211 0
Q ss_pred ---------------------------HHHHH---------------------------HHHHHHHhhhhHHhhcCCcCH
Q 047286 415 ---------------------------NYERL---------------------------HINAFCFFIGSKLVEHGDATF 440 (632)
Q Consensus 415 ---------------------------~~~~~---------------------------~~~~~~~~~g~~~v~~g~~s~ 440 (632)
.+.+. ....+++++|+.++.+|.+++
T Consensus 191 ~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~ 270 (571)
T TIGR02203 191 QVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIASLALAVVLFIALFQAQAGSLTA 270 (571)
T ss_pred HHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCH
Confidence 00000 112346778999999999999
Q ss_pred HHHHHHHHHH--HHHHHHHHHhHHhHHHHHHHHHHHHHHHHccCCCCCCCCCCC------CC---------------CCc
Q 047286 441 GEVFKFLSEF--GCFWCLESTAVAPNADKAKGSAASIFEILESKPKIDWSSKDG------MT---------------PST 497 (632)
Q Consensus 441 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~------~~---------------~~~ 497 (632)
|.++++.... ...++..+......+..++.+.+|+.++++.+++.+...... .. .++
T Consensus 271 g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~il~~ 350 (571)
T TIGR02203 271 GDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGTRAIERARGDVEFRNVTFRYPGRDRPALDS 350 (571)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCeEEEEEEEEEcCCCCCccccC
Confidence 9999888433 334567777778888999999999999998765532111000 00 001
Q ss_pred ccccEEEeeEEEEEecCCCChHHHHHhhhcCCChhh--------------------------------------------
Q 047286 498 VRGDIVFEHTVALVGENGNGKSTVISLAERFHNPEQ-------------------------------------------- 533 (632)
Q Consensus 498 ~~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~-------------------------------------------- 533 (632)
.+-+|+-+++++|||+||||||||+++|.|+|+|++
T Consensus 351 inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~ 430 (571)
T TIGR02203 351 ISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGR 430 (571)
T ss_pred eeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCC
Confidence 111223345899999999999999999999998843
Q ss_pred --------hcHHHHHHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh------------------------
Q 047286 534 --------VIYSWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY------------------------ 581 (632)
Q Consensus 534 --------~~~~~~~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~------------------------ 581 (632)
++......++++++.+||+||||.+||+|.+||||||||||||||+++
T Consensus 431 ~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~ 510 (571)
T TIGR02203 431 TEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQA 510 (571)
T ss_pred CCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHH
Confidence 000111226789999999999999999999999999999999999766
Q ss_pred -----------hccccchhhhhcCCEEEEEeCCeEeeecChHHHhccCCchhHHHHHhhhc
Q 047286 582 -----------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKITDGTYASLTALHMS 631 (632)
Q Consensus 582 -----------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~~~~~~ 631 (632)
|+||||++.++.||+|++|++|+++|.|+|++|++. ++.|+++++.+.+
T Consensus 511 ~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~~-~~~~~~~~~~~~~ 570 (571)
T TIGR02203 511 ALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLAR-NGLYAQLHNMQFR 570 (571)
T ss_pred HHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHHc-CCHHHHHHHHhhc
Confidence 789999999999999999999999999999999997 8999999987654
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-39 Score=333.98 Aligned_cols=167 Identities=27% Similarity=0.395 Sum_probs=135.8
Q ss_pred HHhHHHHHHHHHHHHHHHHccCCCCCCCCCCCCC------------------CC---cccccEEEeeEEEEEecCCCChH
Q 047286 461 VAPNADKAKGSAASIFEILESKPKIDWSSKDGMT------------------PS---TVRGDIVFEHTVALVGENGNGKS 519 (632)
Q Consensus 461 ~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~------------------~~---~~~g~I~f~~~vaIVG~SGsGKS 519 (632)
.+....+...|+.|+.++.+.+++...+...... ++ +.+-.+.-+++|||+||||||||
T Consensus 299 A~~~lgq~~~Sa~Rl~~i~~q~~e~~~~~~~~~~~~~~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKS 378 (573)
T COG4987 299 AFQHLGQVIASARRLNDILDQKPEVTFPDEQTATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKS 378 (573)
T ss_pred hHHHhhHHHHHHHHHhhhccCCcccCCCccccCCccceeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHH
Confidence 3356667788999999999998876544110000 00 11123444459999999999999
Q ss_pred HHHHhhhcCCChhh---------------------------------------------------hcHHHHHHHHHHHHh
Q 047286 520 TVISLAERFHNPEQ---------------------------------------------------VIYSWIIIKCTNFIA 548 (632)
Q Consensus 520 TL~~ll~r~y~~~~---------------------------------------------------~~~~~~~~~~~~~i~ 548 (632)
|++++|.|-|+|++ +|......++++++.
T Consensus 379 TllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~ 458 (573)
T COG4987 379 TLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLE 458 (573)
T ss_pred HHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHH
Confidence 99999999999854 222222347789999
Q ss_pred cCCCccCcccccCCCCCChHHHHHHHHHHHHhh-----------------------------------hccccchhhhhc
Q 047286 549 SLPQGSDLNVGERGLQLSGGLKQRIARTRARNY-----------------------------------CGCGSPPYHYKN 593 (632)
Q Consensus 549 ~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~-----------------------------------~~iahrl~~~~~ 593 (632)
+.|+||+|++||+|.+||||||||+||||++++ ++||||+.-++.
T Consensus 459 ~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~ 538 (573)
T COG4987 459 SAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLER 538 (573)
T ss_pred hChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhh
Confidence 999999999999999999999999999999877 899999999999
Q ss_pred CCEEEEEeCCeEeeecChHHHhccCCchhHHHHHh
Q 047286 594 ADITSVVKNGVIAEKGRHDALMKITDGTYASLTAL 628 (632)
Q Consensus 594 aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~~~ 628 (632)
||+|+|||+|+|+|+|+|+||+.+ +|.|++|++.
T Consensus 539 ~drIivl~~Gkiie~G~~~~Ll~~-~g~~~~l~q~ 572 (573)
T COG4987 539 MDRIIVLDNGKIIEEGTHAELLAN-NGRYKRLYQL 572 (573)
T ss_pred cCEEEEEECCeeeecCCHHhhhcc-ccHHHHHhcc
Confidence 999999999999999999999997 9999999863
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=358.77 Aligned_cols=279 Identities=26% Similarity=0.333 Sum_probs=206.5
Q ss_pred hhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhH--H----H------
Q 047286 349 GAVGARLSTDASAVRSVVGDALGLIIQNIATIAAGLVIAFTA-WKLAFITLAVPSLTIAEGYLKKK--K----N------ 415 (632)
Q Consensus 349 G~l~srls~D~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~l~lv~l~~~~l~~~~~~~~~~--~----~------ 415 (632)
|++++|+++|++.+...+...+..++..++.+++.+++++.. |.++++++++.|+.+...+...+ + .
T Consensus 113 g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ 192 (588)
T PRK13657 113 GRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYH 192 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998887777777777666666666666655 88888777766665443221111 0 0
Q ss_pred ----------------------------HHHH---------------------------HHHHHHHhhhhHHhhcCCcCH
Q 047286 416 ----------------------------YERL---------------------------HINAFCFFIGSKLVEHGDATF 440 (632)
Q Consensus 416 ----------------------------~~~~---------------------------~~~~~~~~~g~~~v~~g~~s~ 440 (632)
+.+. .....++++|++++.+|.+++
T Consensus 193 ~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~ 272 (588)
T PRK13657 193 DLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRAASTITMLAILVLGAALVQKGQLRV 272 (588)
T ss_pred HHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCH
Confidence 0000 112345678999999999999
Q ss_pred HHHHHHHHHH--HHHHHHHHHhHHhHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCcccccEEE--------------
Q 047286 441 GEVFKFLSEF--GCFWCLESTAVAPNADKAKGSAASIFEILESKPKIDWSSKDGMTPSTVRGDIVF-------------- 504 (632)
Q Consensus 441 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~f-------------- 504 (632)
|++++++... ...++..+.........+..+.+|+.++++.+++.+.... ....+...+.|+|
T Consensus 273 g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~-~~~~~~~~~~I~~~~vsf~y~~~~~iL 351 (588)
T PRK13657 273 GEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPPG-AIDLGRVKGAVEFDDVSFSYDNSRQGV 351 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCC-CCCcCCCCCeEEEEEEEEEeCCCCcee
Confidence 9998877433 3334556666777788888999999999876544221100 0000111122222
Q ss_pred ---------eeEEEEEecCCCChHHHHHhhhcCCChhh------------------------------------------
Q 047286 505 ---------EHTVALVGENGNGKSTVISLAERFHNPEQ------------------------------------------ 533 (632)
Q Consensus 505 ---------~~~vaIVG~SGsGKSTL~~ll~r~y~~~~------------------------------------------ 533 (632)
++++||||+||||||||+++|.|+|+|++
T Consensus 352 ~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~ 431 (588)
T PRK13657 352 EDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRV 431 (588)
T ss_pred cceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhc
Confidence 23899999999999999999999999843
Q ss_pred ---------hcHHHHHHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh-----------------------
Q 047286 534 ---------VIYSWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY----------------------- 581 (632)
Q Consensus 534 ---------~~~~~~~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~----------------------- 581 (632)
++.+....++++|+.++|+|+||.+||+|.+||||||||||||||+++
T Consensus 432 ~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~ 511 (588)
T PRK13657 432 GRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVK 511 (588)
T ss_pred CCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHH
Confidence 111111226679999999999999999999999999999999999766
Q ss_pred ------------hccccchhhhhcCCEEEEEeCCeEeeecChHHHhccCCchhHHHHHhh
Q 047286 582 ------------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKITDGTYASLTALH 629 (632)
Q Consensus 582 ------------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~~~~ 629 (632)
++||||++.++.||+|++|++|+++|+|+|+||+++ +|.|++|++.+
T Consensus 512 ~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~-~~~y~~l~~~~ 570 (588)
T PRK13657 512 AALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVAR-GGRFAALLRAQ 570 (588)
T ss_pred HHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHC-CChHHHHHHHh
Confidence 789999999999999999999999999999999997 89999999865
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=357.09 Aligned_cols=280 Identities=23% Similarity=0.302 Sum_probs=210.5
Q ss_pred hhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-hH-----HH------
Q 047286 349 GAVGARLSTDASAVRSVVGDALGLIIQNIATIAAGLVIAFTA-WKLAFITLAVPSLTIAEGYLK-KK-----KN------ 415 (632)
Q Consensus 349 G~l~srls~D~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~l~lv~l~~~~l~~~~~~~~-~~-----~~------ 415 (632)
|++++|+++|++.+...+...+..++..++.+++.+++++.. |.++++++++.|+++...... ++ +.
T Consensus 113 g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (585)
T TIGR01192 113 SNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYH 192 (585)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988888887777777777776767666 999988887777654433211 11 00
Q ss_pred ----------------------------HHHH---------------------------HHHHHHHhhhhHHhhcCCcCH
Q 047286 416 ----------------------------YERL---------------------------HINAFCFFIGSKLVEHGDATF 440 (632)
Q Consensus 416 ----------------------------~~~~---------------------------~~~~~~~~~g~~~v~~g~~s~ 440 (632)
+.+. ....+++++|++++.+|.+++
T Consensus 193 ~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~ 272 (585)
T TIGR01192 193 NVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNRMASTISMMCILVIGTVLVIKGELSV 272 (585)
T ss_pred HHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCH
Confidence 0000 112345678999999999999
Q ss_pred HHHHHHHHHHH--HHHHHHHHhHHhHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCcccccEEE--------------
Q 047286 441 GEVFKFLSEFG--CFWCLESTAVAPNADKAKGSAASIFEILESKPKIDWSSKDGMTPSTVRGDIVF-------------- 504 (632)
Q Consensus 441 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~f-------------- 504 (632)
|++++++.... ..++.........+..+..+.+|+.++++.+++...+.. ....+...+.|+|
T Consensus 273 g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~v~~~y~~~~~~l 351 (585)
T TIGR01192 273 GEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPAD-APELPNVKGAVEFRHITFEFANSSQGV 351 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCcc-CCCCCCCCCeEEEEEEEEECCCCCccc
Confidence 99998874333 334566677777888889999999999877544321110 0000011122222
Q ss_pred ---------eeEEEEEecCCCChHHHHHhhhcCCChhhh------------cH---------------------------
Q 047286 505 ---------EHTVALVGENGNGKSTVISLAERFHNPEQV------------IY--------------------------- 536 (632)
Q Consensus 505 ---------~~~vaIVG~SGsGKSTL~~ll~r~y~~~~~------------~~--------------------------- 536 (632)
++++|||||||||||||+++|.|+|+|++. ..
T Consensus 352 ~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~ 431 (585)
T TIGR01192 352 FDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRL 431 (585)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhc
Confidence 338999999999999999999999988430 00
Q ss_pred ------------HHHHHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh-----------------------
Q 047286 537 ------------SWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY----------------------- 581 (632)
Q Consensus 537 ------------~~~~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~----------------------- 581 (632)
+....++++++.++|+|+||.+||+|.+|||||||||+||||+++
T Consensus 432 ~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~ 511 (585)
T TIGR01192 432 GREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVK 511 (585)
T ss_pred CCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHH
Confidence 001124678999999999999999999999999999999999766
Q ss_pred ------------hccccchhhhhcCCEEEEEeCCeEeeecChHHHhccCCchhHHHHHhhh
Q 047286 582 ------------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKITDGTYASLTALHM 630 (632)
Q Consensus 582 ------------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~~~~~ 630 (632)
|++|||+++++.||+|++|++|+|+|.|+|+||+++ +|.|+++++.|.
T Consensus 512 ~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~y~~l~~~~~ 571 (585)
T TIGR01192 512 NAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQK-DGRFYKLLRRSG 571 (585)
T ss_pred HHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHC-CChHHHHHHhCc
Confidence 788999999999999999999999999999999997 999999998763
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-39 Score=387.81 Aligned_cols=280 Identities=26% Similarity=0.358 Sum_probs=214.6
Q ss_pred hhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHH-------------
Q 047286 349 GAVGARLSTDASAVRSVVGDALGLIIQNIATIAAGLVIAFTA-WKLAFITLAVPSLTIAEGYLKKKK------------- 414 (632)
Q Consensus 349 G~l~srls~D~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~l~lv~l~~~~l~~~~~~~~~~~------------- 414 (632)
|.+.+|+++|++.++..+...+..++..++.++++++++|+. |+|+++++++.|+++...++..++
T Consensus 154 ~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~~sw~Lalv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~ 233 (1466)
T PTZ00265 154 SKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLTLCITCVFPLIYICGVICNKKVKINKKTSLLYNN 233 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999988 999999998888876544322110
Q ss_pred ---------------------------HHHHH---------------------------HHHHHHHhhhhHHhhcC----
Q 047286 415 ---------------------------NYERL---------------------------HINAFCFFIGSKLVEHG---- 436 (632)
Q Consensus 415 ---------------------------~~~~~---------------------------~~~~~~~~~g~~~v~~g---- 436 (632)
.+.+. ...++++|+|++++..|
T Consensus 234 ~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~ 313 (1466)
T PTZ00265 234 NTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQ 313 (1466)
T ss_pred HHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 00000 12446789999999886
Q ss_pred ----CcCHHHHHHHHHHH--HHHHHHHHHhHHhHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCcccccEEE------
Q 047286 437 ----DATFGEVFKFLSEF--GCFWCLESTAVAPNADKAKGSAASIFEILESKPKIDWSSKDGMTPSTVRGDIVF------ 504 (632)
Q Consensus 437 ----~~s~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~f------ 504 (632)
.+++|.+++++... ..+.+.........++++..+++|++++++.+++.+... .+..++.. +.|+|
T Consensus 314 ~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~~~~~~~~~~-~~~~~~~~-~~I~~~nVsf~ 391 (1466)
T PTZ00265 314 QPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINRKPLVENND-DGKKLKDI-KKIQFKNVRFH 391 (1466)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC-CCccCCCC-CcEEEEEEEEE
Confidence 47788887765322 222234445556778889999999999999877643211 11111110 12222
Q ss_pred -------------------eeEEEEEecCCCChHHHHHhhhcCCChhh----h---------cHHH--------------
Q 047286 505 -------------------EHTVALVGENGNGKSTVISLAERFHNPEQ----V---------IYSW-------------- 538 (632)
Q Consensus 505 -------------------~~~vaIVG~SGsGKSTL~~ll~r~y~~~~----~---------~~~~-------------- 538 (632)
++++|||||||||||||+++|+|+|+|++ + ...+
T Consensus 392 Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~L 471 (1466)
T PTZ00265 392 YDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLL 471 (1466)
T ss_pred cCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccc
Confidence 33899999999999999999999999843 0 0000
Q ss_pred --------------------------------------------------------------------------------
Q 047286 539 -------------------------------------------------------------------------------- 538 (632)
Q Consensus 539 -------------------------------------------------------------------------------- 538 (632)
T Consensus 472 F~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~ 551 (1466)
T PTZ00265 472 FSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVD 551 (1466)
T ss_pred hhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHH
Confidence
Q ss_pred --HHHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh-----------------------------------
Q 047286 539 --IIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY----------------------------------- 581 (632)
Q Consensus 539 --~~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~----------------------------------- 581 (632)
...++++||.+||+||||.||++|.+||||||||||||||+++
T Consensus 552 a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~ 631 (1466)
T PTZ00265 552 VSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENR 631 (1466)
T ss_pred HHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCC
Confidence 0114568999999999999999999999999999999999655
Q ss_pred --hccccchhhhhcCCEEEEEeCC-----------------------------------------------eEeeecChH
Q 047286 582 --CGCGSPPYHYKNADITSVVKNG-----------------------------------------------VIAEKGRHD 612 (632)
Q Consensus 582 --~~iahrl~~~~~aD~I~vl~~G-----------------------------------------------~ive~G~h~ 612 (632)
|+||||+++++.||+|+||++| +|+|+|||+
T Consensus 632 TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~ 711 (1466)
T PTZ00265 632 ITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHD 711 (1466)
T ss_pred EEEEEeCCHHHHHhCCEEEEEeCCccccccccccccccccccccccccccccccccccccccccccccCCceeEeeCCHH
Confidence 7899999999999999999986 599999999
Q ss_pred HHhccCCchhHHHHHhhh
Q 047286 613 ALMKITDGTYASLTALHM 630 (632)
Q Consensus 613 eL~~~~~g~y~~l~~~~~ 630 (632)
||+++++|.|+.|++.|.
T Consensus 712 ~L~~~~~g~y~~l~~~q~ 729 (1466)
T PTZ00265 712 ALMKNKNGIYYTMINNQK 729 (1466)
T ss_pred HHHhccCCcHHHHHhhhc
Confidence 999844999999998773
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=356.14 Aligned_cols=282 Identities=24% Similarity=0.306 Sum_probs=208.3
Q ss_pred hhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHHHHhH------H-----
Q 047286 348 IGAVGARLSTDASAVRSVVGDALGLIIQNIATIAAGLVIA-FTA-WKLAFITLAVPSLTIAEGYLKKK------K----- 414 (632)
Q Consensus 348 ~G~l~srls~D~~~i~~~~~~~~~~~~~~~~~~~~~~v~~-~~~-~~l~lv~l~~~~l~~~~~~~~~~------~----- 414 (632)
.|++.+|+++|++.++..+...+..++..++.++++++++ +.. |+++++++++.|+.+...+...+ +
T Consensus 92 ~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~ 171 (569)
T PRK10789 92 TGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLAQAA 171 (569)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4999999999999999888777777777766555555444 344 99988887777766543321111 0
Q ss_pred -----------------------------HHHHH---------------------------HHHHHHHhhhhHHhhcCCc
Q 047286 415 -----------------------------NYERL---------------------------HINAFCFFIGSKLVEHGDA 438 (632)
Q Consensus 415 -----------------------------~~~~~---------------------------~~~~~~~~~g~~~v~~g~~ 438 (632)
.+.+. ....+++++|++++..|.+
T Consensus 172 ~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~l 251 (569)
T PRK10789 172 FSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVVNGSL 251 (569)
T ss_pred HHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 00000 1123456778899999999
Q ss_pred CHHHHHHHHHHHH--HHHHHHHHhHHhHHHHHHHHHHHHHHHHccCCCCCCCCCCC------CC---------------C
Q 047286 439 TFGEVFKFLSEFG--CFWCLESTAVAPNADKAKGSAASIFEILESKPKIDWSSKDG------MT---------------P 495 (632)
Q Consensus 439 s~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~------~~---------------~ 495 (632)
++|.++++..... ..++.........+..+..+.+|+.++++.+++........ .. .
T Consensus 252 t~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~I~~~~v~~~y~~~~~~~l 331 (569)
T PRK10789 252 TLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGSEPVPEGRGELDVNIRQFTYPQTDHPAL 331 (569)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCCCCCCCCcEEEEEEEEECCCCCCccc
Confidence 9999998874333 33455666777788899999999999998765432110000 00 0
Q ss_pred CcccccEEEeeEEEEEecCCCChHHHHHhhhcCCChhh------------------------------------------
Q 047286 496 STVRGDIVFEHTVALVGENGNGKSTVISLAERFHNPEQ------------------------------------------ 533 (632)
Q Consensus 496 ~~~~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~------------------------------------------ 533 (632)
.+.+-+|+-++++|||||||||||||+++|.|+|+|++
T Consensus 332 ~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~ 411 (569)
T PRK10789 332 ENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIAL 411 (569)
T ss_pred cCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhc
Confidence 00111223334899999999999999999999999843
Q ss_pred ---------hcHHHHHHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh-----------------------
Q 047286 534 ---------VIYSWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY----------------------- 581 (632)
Q Consensus 534 ---------~~~~~~~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~----------------------- 581 (632)
++.+....++++++.++|+||||.+||+|.+|||||||||+||||+++
T Consensus 412 ~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~ 491 (569)
T PRK10789 412 GRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQIL 491 (569)
T ss_pred CCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHH
Confidence 000011225678999999999999999999999999999999999766
Q ss_pred ------------hccccchhhhhcCCEEEEEeCCeEeeecChHHHhccCCchhHHHHHhhh
Q 047286 582 ------------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKITDGTYASLTALHM 630 (632)
Q Consensus 582 ------------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~~~~~ 630 (632)
+++|||+++++.||+|++|++|+|+|+|+|+||+++ +|.|+++++.|.
T Consensus 492 ~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~y~~l~~~~~ 551 (569)
T PRK10789 492 HNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQ-SGWYRDMYRYQQ 551 (569)
T ss_pred HHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHc-CChHHHHHHHhh
Confidence 788999999999999999999999999999999997 999999998764
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=348.68 Aligned_cols=281 Identities=28% Similarity=0.386 Sum_probs=210.5
Q ss_pred hhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhH------HH------
Q 047286 349 GAVGARLSTDASAVRSVVGDALGLIIQNIATIAAGLVIAFTA-WKLAFITLAVPSLTIAEGYLKKK------KN------ 415 (632)
Q Consensus 349 G~l~srls~D~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~l~lv~l~~~~l~~~~~~~~~~------~~------ 415 (632)
|++.+|+++|++.++..+...+..++..++.+++.+++++.. |.+++++++..|+.+...++..+ +.
T Consensus 115 g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 194 (576)
T TIGR02204 115 GEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIA 194 (576)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888888888888877777777665 88877776666654433221111 00
Q ss_pred ----------------------------HHHH---------------------------HHHHHHHhhhhHHhhcCCcCH
Q 047286 416 ----------------------------YERL---------------------------HINAFCFFIGSKLVEHGDATF 440 (632)
Q Consensus 416 ----------------------------~~~~---------------------------~~~~~~~~~g~~~v~~g~~s~ 440 (632)
+.+. ...++++++|++++.+|.+++
T Consensus 195 ~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~ 274 (576)
T TIGR02204 195 DAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSA 274 (576)
T ss_pred HHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCH
Confidence 0000 011234567889999999999
Q ss_pred HHHHHHHH--HHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHccCCCCCCCC-CCC--------C----------------
Q 047286 441 GEVFKFLS--EFGCFWCLESTAVAPNADKAKGSAASIFEILESKPKIDWSS-KDG--------M---------------- 493 (632)
Q Consensus 441 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~-~~~--------~---------------- 493 (632)
|.++++.. .....++.........+..+..+.+|+.++++.+++.+... ... .
T Consensus 275 g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~ 354 (576)
T TIGR02204 275 GTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQP 354 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCccCCcCCCceEEEEEEEEECCCCCCCc
Confidence 99888773 33334566777778888999999999999987654421110 000 0
Q ss_pred CCCcccccEEEeeEEEEEecCCCChHHHHHhhhcCCChhh------------hcH-------------------------
Q 047286 494 TPSTVRGDIVFEHTVALVGENGNGKSTVISLAERFHNPEQ------------VIY------------------------- 536 (632)
Q Consensus 494 ~~~~~~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~------------~~~------------------------- 536 (632)
..++++-+|+-+++++|||+||||||||+++|+|+|+|++ +..
T Consensus 355 iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni 434 (576)
T TIGR02204 355 ALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENI 434 (576)
T ss_pred cccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHH
Confidence 0011112333445899999999999999999999999843 000
Q ss_pred --------------HHHHHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh---------------------
Q 047286 537 --------------SWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY--------------------- 581 (632)
Q Consensus 537 --------------~~~~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~--------------------- 581 (632)
+....++++++.++|+|+||.+||+|.+|||||||||+||||+++
T Consensus 435 ~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~ 514 (576)
T TIGR02204 435 RYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQL 514 (576)
T ss_pred hcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHH
Confidence 011125678999999999999999999999999999999999765
Q ss_pred --------------hccccchhhhhcCCEEEEEeCCeEeeecChHHHhccCCchhHHHHHhhh
Q 047286 582 --------------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKITDGTYASLTALHM 630 (632)
Q Consensus 582 --------------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~~~~~ 630 (632)
|+||||++.++.||+|++|++|+++|.|+|++|+++ ++.|++|++.|.
T Consensus 515 i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~~-~~~~~~l~~~~~ 576 (576)
T TIGR02204 515 VQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAK-GGLYARLARLQF 576 (576)
T ss_pred HHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHHc-CChHHHHHhhcC
Confidence 789999999999999999999999999999999997 999999998763
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=318.76 Aligned_cols=171 Identities=25% Similarity=0.361 Sum_probs=128.5
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCc--------------------HH---hh-cceEEEcccCcc-cc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAP--------------------EA---EQ-EKIGLVSKEPIF-LF 139 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~--------------------~~---~r-~~i~~v~Q~~~~-~~ 139 (632)
.+||+|++||.+||||+||||||-..+.++++..+++ .+ +| .+|+++||+|.- ++
T Consensus 28 ~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQEPMtSLN 107 (534)
T COG4172 28 GISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLN 107 (534)
T ss_pred cceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEecccccccC
Confidence 3999999999999999999999998887765432211 11 22 369999999952 11
Q ss_pred ccccccc----cccc--C-CCCCCHHHHHHHHHHccch-------hhHhhCCccccccc-----------------ccCC
Q 047286 140 CDFNEGQ----YIPY--G-KQNASDEHIRPAVQLANAE-------KSIDKLPLGLDTVV-----------------ATNA 188 (632)
Q Consensus 140 ~~~~~~~----~i~~--~-~~~~~~~~~~~~~~~~~l~-------~~i~~l~~g~~~~v-----------------~ts~ 188 (632)
.-.+... -+.+ + ......+++.+.++.+++. .+..+|++|..++| +|.+
T Consensus 108 Pl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTA 187 (534)
T COG4172 108 PLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTA 187 (534)
T ss_pred cHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcch
Confidence 1111000 1111 1 1123356677788887753 34455667888777 3899
Q ss_pred CCHHHHHHHHHHHHHHhC--CceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcCCCcHHHHHH
Q 047286 189 VDAQSERIVQAAMVKLVT--NQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLV 255 (632)
Q Consensus 189 LD~~~~~~i~~~l~~~~~--~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~ 255 (632)
||...+.+|.+.|+++.+ +..+++||||+..++. ||||+||.+|+++|.|+.++++..|.++|.+..
T Consensus 188 LDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~~t~~lF~~PqHpYTr~L 257 (534)
T COG4172 188 LDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLFAAPQHPYTRKL 257 (534)
T ss_pred hhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeecCcHHHHhhCCCChHHHHH
Confidence 999999999999999864 7899999999999986 999999999999999999999999999998754
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-38 Score=352.03 Aligned_cols=252 Identities=33% Similarity=0.525 Sum_probs=226.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------------------------------------
Q 047286 2 AACLPAIVIAGGITATVVAKLSCRGQIAYAEAEMLLSTQLEP-------------------------------------- 43 (632)
Q Consensus 2 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-------------------------------------- 43 (632)
++.+|+++++..++.+.+++..++..+..++.++.+.|++.|
T Consensus 300 l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 379 (709)
T COG2274 300 LAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALIL 379 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 467899999999999999999999999999999999999944
Q ss_pred ------------------------CCcccHHHH-----------------HHHHHHHHHHHHHHHHHHHHhccCCCCCCC
Q 047286 44 ------------------------LEDMPLGQT-----------------SLNVNAFAAGQAAACKMFETIERIPKINPY 82 (632)
Q Consensus 44 ------------------------~~~~~~~~~-----------------~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~ 82 (632)
.+.+++|++ ...+..+++.+.|.+|+.++++.++|.+..
T Consensus 380 ~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~ 459 (709)
T COG2274 380 NTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGD 459 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc
Confidence 456777764 345778999999999999999998874321
Q ss_pred C-----------------------------CcEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCc------------
Q 047286 83 D-----------------------------NRFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAP------------ 121 (632)
Q Consensus 83 ~-----------------------------~~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~------------ 121 (632)
. .++|++|++||++||+|+||||||||+|++.| +|.|
T Consensus 460 ~~~~~~~~~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~g--ly~p~~G~I~~dg~dl 537 (709)
T COG2274 460 KTLIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLG--LYKPQQGRILLDGVDL 537 (709)
T ss_pred cccccccccCceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhc--CCCCCCceEEECCEeH
Confidence 1 01999999999999999999999999999984 4433
Q ss_pred -----HHhhcceEEEcccCcccccccccccccccCCCCCCHHHHHHHHHHccchhhHhhCCccccccc------------
Q 047286 122 -----EAEQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV------------ 184 (632)
Q Consensus 122 -----~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~~~v------------ 184 (632)
..+|++||||+||+.+|++++++ |+.++.++.+.|++.++++.+++++++.++|.||+|.+
T Consensus 538 ~~i~~~~lR~~ig~V~Q~~~Lf~gSI~e--Ni~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQr 615 (709)
T COG2274 538 NDIDLASLRRQVGYVLQDPFLFSGSIRE--NIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQR 615 (709)
T ss_pred HhcCHHHHHhheeEEcccchhhcCcHHH--HHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHH
Confidence 34899999999999999999999 79999999999999999999999999999999999988
Q ss_pred --------------------ccCCCCHHHHHHHHHHHHHHhCCceEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHh
Q 047286 185 --------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELI 244 (632)
Q Consensus 185 --------------------~ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~ 244 (632)
+||+||+++++.+.+.|.++..++|+|+|||++..+++||||+||++|+|+++|+|+|++
T Consensus 616 QrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell 695 (709)
T COG2274 616 QRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELL 695 (709)
T ss_pred HHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHH
Confidence 399999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcHHHHHHHHH
Q 047286 245 EDPEGAYSQLVRLQ 258 (632)
Q Consensus 245 ~~~~~~~~~~~~~~ 258 (632)
+. ++.|.+++..|
T Consensus 696 ~~-~g~y~~l~~~q 708 (709)
T COG2274 696 AQ-GGLYARLYQQQ 708 (709)
T ss_pred Hh-cChHHHHHhcc
Confidence 88 88898887643
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-37 Score=318.47 Aligned_cols=203 Identities=29% Similarity=0.324 Sum_probs=144.1
Q ss_pred HHhhhhHHhhcCCcCHHHHHHHH--HHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCcccccE
Q 047286 425 CFFIGSKLVEHGDATFGEVFKFL--SEFGCFWCLESTAVAPNADKAKGSAASIFEILESKPKIDWSSKDGMTPSTVRGDI 502 (632)
Q Consensus 425 ~~~~g~~~v~~g~~s~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I 502 (632)
+.+.|..=+..|.+++++++... ......++..+.....+...+..-....+...+....... ...++....+.|
T Consensus 276 im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~---~~~~i~~~~~~I 352 (591)
T KOG0057|consen 276 IMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQE---AALPIELFGGSI 352 (591)
T ss_pred HHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhh---ccCCcccCCCcE
Confidence 34455555677788888876554 2222223444444444555555444444433221111110 000111112334
Q ss_pred EE-----------------------eeEEEEEecCCCChHHHHHhhhcCCChhh--------hc----------------
Q 047286 503 VF-----------------------EHTVALVGENGNGKSTVISLAERFHNPEQ--------VI---------------- 535 (632)
Q Consensus 503 ~f-----------------------~~~vaIVG~SGsGKSTL~~ll~r~y~~~~--------~~---------------- 535 (632)
+| +++|||||+|||||||++++|+||||... ++
T Consensus 353 ~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~Ig~VPQ 432 (591)
T KOG0057|consen 353 EFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSIGVVPQ 432 (591)
T ss_pred EEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhheeEeCC
Confidence 44 44899999999999999999999998421 00
Q ss_pred --------------------------HHHHHHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh--------
Q 047286 536 --------------------------YSWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY-------- 581 (632)
Q Consensus 536 --------------------------~~~~~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~-------- 581 (632)
......++||.|++||+||+|.|||+|..||||||||++||||++|
T Consensus 433 d~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~D 512 (591)
T KOG0057|consen 433 DSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLD 512 (591)
T ss_pred cccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEec
Confidence 0111237789999999999999999999999999999999999887
Q ss_pred ---------------------------hccccchhhhhcCCEEEEEeCCeEeeecChHHHhccCCchhHHHHHhhhc
Q 047286 582 ---------------------------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKITDGTYASLTALHMS 631 (632)
Q Consensus 582 ---------------------------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~~~~~~ 631 (632)
|.|+||++++++||+|+|+|+|++.|+|||+||+++ .+.|+++|..|..
T Consensus 513 EaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~~-s~~~~~~w~~~~~ 588 (591)
T KOG0057|consen 513 EATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLAP-SELYADLWTTQTS 588 (591)
T ss_pred CcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhhh-hhHHHHHhccccc
Confidence 899999999999999999999999999999999995 9999999988764
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=320.26 Aligned_cols=254 Identities=33% Similarity=0.437 Sum_probs=225.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------------------------------------
Q 047286 2 AACLPAIVIAGGITATVVAKLSCRGQIAYAEAEMLLSTQLEP-------------------------------------- 43 (632)
Q Consensus 2 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-------------------------------------- 43 (632)
++++|++.++.+.++...++.++++.+.+.++++.+-+.+.|
T Consensus 147 lit~PlIPlfMilvg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflS 226 (559)
T COG4988 147 LITAPLIPLFMILVGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLS 226 (559)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999955
Q ss_pred ------------------------C-Ccc-----------------cHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 047286 44 ------------------------L-EDM-----------------PLGQTSLNVNAFAAGQAAACKMFETIERIPKINP 81 (632)
Q Consensus 44 ------------------------~-~~~-----------------~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~ 81 (632)
. |.+ |+.+++..+|.-+.|.+|+++++.+++.+.+..+
T Consensus 227 s~vLeffa~lsiAlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~ 306 (559)
T COG4988 227 SAVLEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPG 306 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCC
Confidence 1 232 4445677899999999999999999987664221
Q ss_pred CC-----------------------------CcEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCC--------------
Q 047286 82 YD-----------------------------NRFLQHVPSGTTVALVGQSGSGKSTVINLVESFRF-------------- 118 (632)
Q Consensus 82 ~~-----------------------------~~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~-------------- 118 (632)
.. .++||++++|+.++|||+||||||||+++|.|+..
T Consensus 307 ~~~~~~~~~~~~~ei~~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~ 386 (559)
T COG4988 307 SGEKAEVANEPPIEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLR 386 (559)
T ss_pred CccccccccCCCceeeecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCcccc
Confidence 00 12999999999999999999999999999986532
Q ss_pred -CCcHHhhcceEEEcccCcccccccccccccccCCCCCCHHHHHHHHHHccchhhHhhCCccccccc-------------
Q 047286 119 -YAPEAEQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV------------- 184 (632)
Q Consensus 119 -~~~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~~~v------------- 184 (632)
.++..+|++++||+|+|++|.+|+++ |+.+++++.+++++.++++.+++.+++.. |+|+++.+
T Consensus 387 ~l~~~~~~k~i~~v~Q~p~lf~gTire--Ni~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~Q 463 (559)
T COG4988 387 DLSPEAWRKQISWVSQNPYLFAGTIRE--NILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQ 463 (559)
T ss_pred ccCHHHHHhHeeeeCCCCccccccHHH--HhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHH
Confidence 23456899999999999999999999 79999999999999999999999999999 99999887
Q ss_pred -------------------ccCCCCHHHHHHHHHHHHHHhCCceEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHhc
Q 047286 185 -------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIE 245 (632)
Q Consensus 185 -------------------~ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~ 245 (632)
+|++||.++++.+.+.|.++.+++|++++||++..++.||+|++|++|++++.|+|+++.+
T Consensus 464 RlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~ 543 (559)
T COG4988 464 RLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSE 543 (559)
T ss_pred HHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhh
Confidence 2999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCcHHHHHHHHHh
Q 047286 246 DPEGAYSQLVRLQE 259 (632)
Q Consensus 246 ~~~~~~~~~~~~~~ 259 (632)
+ ++.|++++..|.
T Consensus 544 ~-~~~y~~l~~~q~ 556 (559)
T COG4988 544 K-QGLYANLLKQQE 556 (559)
T ss_pred c-CcHHHHHHHHHh
Confidence 7 788999887654
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=324.15 Aligned_cols=268 Identities=21% Similarity=0.204 Sum_probs=192.4
Q ss_pred hhHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhH------H------
Q 047286 349 GAVGARLSTDASAVRSVVGD-ALGLIIQNIATIAAGLVIAFTA-WKLAFITLAVPSLTIAEGYLKKK------K------ 414 (632)
Q Consensus 349 G~l~srls~D~~~i~~~~~~-~~~~~~~~~~~~~~~~v~~~~~-~~l~lv~l~~~~l~~~~~~~~~~------~------ 414 (632)
+...+++++|++.+++.+.. .+..++..++.++.. ++++.. |.+++++++..|+++...++..+ +
T Consensus 98 ~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~l~li~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~ 176 (544)
T TIGR01842 98 KIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIYL-LVCFLLHPWIGILALGGAVVLVGLALLNNRATKKPLKEATEAS 176 (544)
T ss_pred cchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 67788999999999998876 455566665555444 344444 88887776655554332211100 0
Q ss_pred ----------------------------HHHHH---------------------------HHHHHHHhhhhHHhhcCCcC
Q 047286 415 ----------------------------NYERL---------------------------HINAFCFFIGSKLVEHGDAT 439 (632)
Q Consensus 415 ----------------------------~~~~~---------------------------~~~~~~~~~g~~~v~~g~~s 439 (632)
.+.+. ....+++++|++++..|.++
T Consensus 177 ~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~it 256 (544)
T TIGR01842 177 IRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQSLVLGLGAYLAIDGEIT 256 (544)
T ss_pred HHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 00000 11234567899999999999
Q ss_pred HHHHHHHHHHH--HHHHHHHHHhHHhHHHHHHHHHHHHHHHHccCCCCCCCCCCC-----C---------------CCCc
Q 047286 440 FGEVFKFLSEF--GCFWCLESTAVAPNADKAKGSAASIFEILESKPKIDWSSKDG-----M---------------TPST 497 (632)
Q Consensus 440 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~-----~---------------~~~~ 497 (632)
+|++++++... ...++.........++.+..+.+|+.++++.+++.+...... . ...+
T Consensus 257 ~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~ 336 (544)
T TIGR01842 257 PGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPAMPLPEPEGHLSVENVTIVPPGGKKPTLRG 336 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCCCeEEEEEEEEEcCCCCcccccc
Confidence 99999887433 334566777777888999999999999997765432110000 0 0011
Q ss_pred ccccEEEeeEEEEEecCCCChHHHHHhhhcCCChhhh-------------------------------------------
Q 047286 498 VRGDIVFEHTVALVGENGNGKSTVISLAERFHNPEQV------------------------------------------- 534 (632)
Q Consensus 498 ~~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~~------------------------------------------- 534 (632)
.+-+|+-++++|||||||||||||+++|+|+|+|++.
T Consensus 337 ~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~ 416 (544)
T TIGR01842 337 ISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFG 416 (544)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHHHHhccC
Confidence 1112333448999999999999999999999988430
Q ss_pred --------cHHHHHHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh-------------------------
Q 047286 535 --------IYSWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY------------------------- 581 (632)
Q Consensus 535 --------~~~~~~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~------------------------- 581 (632)
+.+....++++++.++|+|+||.+||+|.+|||||||||+||||+++
T Consensus 417 ~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~ 496 (544)
T TIGR01842 417 ENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANA 496 (544)
T ss_pred CCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHH
Confidence 00011225679999999999999999999999999999999999665
Q ss_pred -----------hccccchhhhhcCCEEEEEeCCeEeeecChHHHhcc
Q 047286 582 -----------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKI 617 (632)
Q Consensus 582 -----------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~ 617 (632)
+++|||+++++.||+|++|++|+++|+|+|+||+++
T Consensus 497 l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 543 (544)
T TIGR01842 497 IKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLAK 543 (544)
T ss_pred HHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc
Confidence 788999999999999999999999999999999863
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=335.00 Aligned_cols=255 Identities=25% Similarity=0.346 Sum_probs=213.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------------------------------------
Q 047286 2 AACLPAIVIAGGITATVVAKLSCRGQIAYAEAEMLLSTQLEP-------------------------------------- 43 (632)
Q Consensus 2 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-------------------------------------- 43 (632)
++++|+++++..++.++.++..++.++..++.++.+.|.++|
T Consensus 170 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (588)
T PRK11174 170 LGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFLS 249 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777778888999999999999999999999999954
Q ss_pred -----------------------CCcccHHH--------------------------HHHHHHHHHHHHHHHHHHHHHhc
Q 047286 44 -----------------------LEDMPLGQ--------------------------TSLNVNAFAAGQAAACKMFETIE 74 (632)
Q Consensus 44 -----------------------~~~~~~~~--------------------------~~~~~~~~~~~~~a~~ri~~~~~ 74 (632)
.+.+++|. +...++.++++++|++|+.++++
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~ 329 (588)
T PRK11174 250 SAVLEFFASISIALVAVYFGFSYLGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTFLE 329 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 12222221 22335678999999999999997
Q ss_pred cCCCCC-------C--CC-------------------CcEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCC---------
Q 047286 75 RIPKIN-------P--YD-------------------NRFLQHVPSGTTVALVGQSGSGKSTVINLVESFR--------- 117 (632)
Q Consensus 75 ~~~~~~-------~--~~-------------------~~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~--------- 117 (632)
.+++.. + .. +.+||++++|+++||+||||||||||+++|+++-
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~p~~G~I~i~ 409 (588)
T PRK11174 330 TPLAHPQQGEKELASNDPVTIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKIN 409 (588)
T ss_pred CCCcccCCCccccCCCCCceEEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCcEEEEC
Confidence 653210 0 00 0189999999999999999999999999998442
Q ss_pred -----CCCcHHhhcceEEEcccCcccccccccccccccCCCCCCHHHHHHHHHHccchhhHhhCCccccccc--------
Q 047286 118 -----FYAPEAEQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV-------- 184 (632)
Q Consensus 118 -----~~~~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~~~v-------- 184 (632)
.+++..+|++|+||+|+|++|++|+++ |+.+++++.+++++.++++.+++++++.++|+|++|.+
T Consensus 410 g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~e--NI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LS 487 (588)
T PRK11174 410 GIELRELDPESWRKHLSWVGQNPQLPHGTLRD--NVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLS 487 (588)
T ss_pred CEecccCCHHHHHhheEEecCCCcCCCcCHHH--HhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCC
Confidence 112234788999999999999999998 79999888999999999999999999999999999988
Q ss_pred ------------------------ccCCCCHHHHHHHHHHHHHHhCCceEEEEecCchHHhhcCeEEEEeCCeEEEecCh
Q 047286 185 ------------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTH 240 (632)
Q Consensus 185 ------------------------~ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~ 240 (632)
+||+||+++++.+.+.|+++.+++|+|+|||+++.++.||+|++|++|+++++|+|
T Consensus 488 GGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~G~~ 567 (588)
T PRK11174 488 VGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDY 567 (588)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEeecCCH
Confidence 29999999999999999999889999999999999999999999999999999999
Q ss_pred hHHhcCCCcHHHHHHHHHh
Q 047286 241 DELIEDPEGAYSQLVRLQE 259 (632)
Q Consensus 241 ~el~~~~~~~~~~~~~~~~ 259 (632)
+|++++ ++.|.+++..|.
T Consensus 568 ~eL~~~-~~~y~~l~~~q~ 585 (588)
T PRK11174 568 AELSQA-GGLFATLLAHRQ 585 (588)
T ss_pred HHHHhc-chHHHHHHHHhh
Confidence 999876 678888886653
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-37 Score=345.75 Aligned_cols=167 Identities=21% Similarity=0.310 Sum_probs=125.8
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC-------C-----------------c-H---Hhh-cceEEEcccC
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY-------A-----------------P-E---AEQ-EKIGLVSKEP 135 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~-------~-----------------~-~---~~r-~~i~~v~Q~~ 135 (632)
.+||+|++||+++|+||||||||||+++|+|+... + + . ..| +.||||+|+|
T Consensus 34 ~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~ 113 (623)
T PRK10261 34 NLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEP 113 (623)
T ss_pred eeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEEEEeCc
Confidence 39999999999999999999999999999865211 0 0 0 122 4699999998
Q ss_pred c-ccccccccccccccCCC---CCC----HHHHHHHHHHccch-------hhHhhCCcccccccc---------------
Q 047286 136 I-FLFCDFNEGQYIPYGKQ---NAS----DEHIRPAVQLANAE-------KSIDKLPLGLDTVVA--------------- 185 (632)
Q Consensus 136 ~-~~~~~~~~~~~i~~~~~---~~~----~~~~~~~~~~~~l~-------~~i~~l~~g~~~~v~--------------- 185 (632)
. .++...+..+|+.++.. ... .+++.++++..++. ..+.+||+|++++++
T Consensus 114 ~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllD 193 (623)
T PRK10261 114 MTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIAD 193 (623)
T ss_pred hhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 2 12232333335554211 111 24567788888873 456789999998883
Q ss_pred --cCCCCHHHHHHHHHHHHHHh-C-CceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcCCCcHH
Q 047286 186 --TNAVDAQSERIVQAAMVKLV-T-NQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIEDPEGAY 251 (632)
Q Consensus 186 --ts~LD~~~~~~i~~~l~~~~-~-~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~~~~~~ 251 (632)
|++||+.+++.+.+.++++. + +.|+|+|||++..+.. ||||++|++|++++.|+++++...+...|
T Consensus 194 EPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~~~g~~~~~~~~~~~~~ 264 (623)
T PRK10261 194 EPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQIFHAPQHPY 264 (623)
T ss_pred CCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeecccCCHHHhhcCCCChh
Confidence 99999999999999999985 3 7899999999998865 99999999999999999998875543333
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=331.56 Aligned_cols=252 Identities=37% Similarity=0.582 Sum_probs=219.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------------------------------------
Q 047286 3 ACLPAIVIAGGITATVVAKLSCRGQIAYAEAEMLLSTQLEP--------------------------------------- 43 (632)
Q Consensus 3 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~--------------------------------------- 43 (632)
+++|++++...++.++.++...+.++..++.++.+.|.+.|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (567)
T COG1132 160 LILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLA 239 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688888888888888999999999999999999999954
Q ss_pred -----------------------CCcccHHHH-----------------HHHHHHHHHHHHHHHHHHHHhccCCCCCC--
Q 047286 44 -----------------------LEDMPLGQT-----------------SLNVNAFAAGQAAACKMFETIERIPKINP-- 81 (632)
Q Consensus 44 -----------------------~~~~~~~~~-----------------~~~~~~~~~~~~a~~ri~~~~~~~~~~~~-- 81 (632)
.+.+++|++ ...+..++++.+|++|++++++.++++..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~ 319 (567)
T COG1132 240 PLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPP 319 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCC
Confidence 222344432 34467789999999999999998664211
Q ss_pred ------------------CC------CcEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcH---------------
Q 047286 82 ------------------YD------NRFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPE--------------- 122 (632)
Q Consensus 82 ------------------~~------~~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~--------------- 122 (632)
++ +++||++++||.+|||||||||||||+++|. ++|+|.
T Consensus 320 ~~~~~~~~~I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~--r~~~~~~G~I~idg~dI~~i~ 397 (567)
T COG1132 320 DPLKDTIGSIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLL--RLYDPTSGEILIDGIDIRDIS 397 (567)
T ss_pred CCCCCCCCeEEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHh--ccCCCCCCeEEECCEehhhcC
Confidence 01 1299999999999999999999999999998 666552
Q ss_pred --HhhcceEEEcccCcccccccccccccccCCCCCCHHHHHHHHHHccchhhHhhCCccccccc----------------
Q 047286 123 --AEQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV---------------- 184 (632)
Q Consensus 123 --~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~~~v---------------- 184 (632)
.+|++|++|+|++++|.+|+.+ |+.+++++.+++++.++++.+++++++.++|+|++|.+
T Consensus 398 ~~~lr~~I~~V~Qd~~LF~~TI~~--NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrla 475 (567)
T COG1132 398 LDSLRKRIGIVSQDPLLFSGTIRE--NIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLA 475 (567)
T ss_pred HHHHHHhccEEcccceeecccHHH--HHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHH
Confidence 3789999999999999999998 89999988999999999999999999999999999988
Q ss_pred ----------------ccCCCCHHHHHHHHHHHHHHhCCceEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHhcCCC
Q 047286 185 ----------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPE 248 (632)
Q Consensus 185 ----------------~ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~~~~ 248 (632)
+||+||+++++.+++.+.++.+++|+++|+|++++++.||+|+||++|+|++.|+|+||++. +
T Consensus 476 iARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~-~ 554 (567)
T COG1132 476 IARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAK-G 554 (567)
T ss_pred HHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHc-C
Confidence 39999999999999999988888999999999999999999999999999999999999988 8
Q ss_pred cHHHHHHHHHh
Q 047286 249 GAYSQLVRLQE 259 (632)
Q Consensus 249 ~~~~~~~~~~~ 259 (632)
+.|.++++.+.
T Consensus 555 g~y~~l~~~~~ 565 (567)
T COG1132 555 GLYARLYQAQG 565 (567)
T ss_pred CHHHHHHHHhh
Confidence 89999987653
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-34 Score=348.44 Aligned_cols=203 Identities=25% Similarity=0.224 Sum_probs=157.9
Q ss_pred HhhhhHHhhcCCcCHHHHHHHHHHHH--HHHHHHHHhHHhHHHHHHHHHHHHHHHHccCCCCCCCCCC------CC----
Q 047286 426 FFIGSKLVEHGDATFGEVFKFLSEFG--CFWCLESTAVAPNADKAKGSAASIFEILESKPKIDWSSKD------GM---- 493 (632)
Q Consensus 426 ~~~g~~~v~~g~~s~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~------~~---- 493 (632)
+++|++++..|.++++.+++++..+. ..++..+......+..+..+.+|+.++++.+++....... ..
T Consensus 540 ~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~~~~~~~~~~I~~~~ 619 (1495)
T PLN03232 540 VSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQNPPLQPGAPAISIKN 619 (1495)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccCCcCCCCCcEEEEe
Confidence 56788888899999999998874333 3345566666678889999999999999765432111000 00
Q ss_pred ------------CCCcccccEEEeeEEEEEecCCCChHHHHHhhhcCCChhh----------------------------
Q 047286 494 ------------TPSTVRGDIVFEHTVALVGENGNGKSTVISLAERFHNPEQ---------------------------- 533 (632)
Q Consensus 494 ------------~~~~~~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------------------------- 533 (632)
...+++-+|+-++++|||||||||||||+++|.|+|+|.+
T Consensus 620 vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI 699 (1495)
T PLN03232 620 GYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENI 699 (1495)
T ss_pred eEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHh
Confidence 0011111233345899999999999999999999999853
Q ss_pred ----------hcHHHHHHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh----------------------
Q 047286 534 ----------VIYSWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY---------------------- 581 (632)
Q Consensus 534 ----------~~~~~~~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~---------------------- 581 (632)
++......++++++..||+|+||.|||+|.+||||||||||||||+++
T Consensus 700 ~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I 779 (1495)
T PLN03232 700 LFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQV 779 (1495)
T ss_pred hcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHH
Confidence 111111225678899999999999999999999999999999999655
Q ss_pred --------------hccccchhhhhcCCEEEEEeCCeEeeecChHHHhccCCchhHHHHHhh
Q 047286 582 --------------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKITDGTYASLTALH 629 (632)
Q Consensus 582 --------------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~~~~ 629 (632)
|++|||+++++.||+|++|++|+|+|+|+|+||+++ ++.|+++++.+
T Consensus 780 ~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~~-~~~~~~l~~~~ 840 (1495)
T PLN03232 780 FDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKS-GSLFKKLMENA 840 (1495)
T ss_pred HHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHhc-chhHHHHHHhc
Confidence 789999999999999999999999999999999987 89999998754
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=316.27 Aligned_cols=234 Identities=20% Similarity=0.186 Sum_probs=167.6
Q ss_pred hhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-HHHhH------HH----
Q 047286 348 IGAVGARLSTDASAVRSVVGDALGLIIQNIATIAAGLVIAFTA-WKLAFITLAVPSLTIAEG-YLKKK------KN---- 415 (632)
Q Consensus 348 ~G~l~srls~D~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~l~lv~l~~~~l~~~~~-~~~~~------~~---- 415 (632)
.|++++|+++|++.+++.+...+..++..++.+++.+++++.. |++++++++..|++.... ++..+ +.
T Consensus 109 ~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (529)
T TIGR02868 109 TGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVLAAGLLLAGFVAPLVSLRAARAAEVALARL 188 (529)
T ss_pred hhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 3999999999999999999988888888888887777777766 999888776655543221 11100 00
Q ss_pred ------------------------------HHHH---------------------------HHHHHHHhhhhHHhhcCCc
Q 047286 416 ------------------------------YERL---------------------------HINAFCFFIGSKLVEHGDA 438 (632)
Q Consensus 416 ------------------------------~~~~---------------------------~~~~~~~~~g~~~v~~g~~ 438 (632)
+.+. ....+++++|+.++..|.+
T Consensus 189 ~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~ 268 (529)
T TIGR02868 189 RSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAAAQLLAAGLAVLGALWAGGPAVADGTL 268 (529)
T ss_pred HHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 0000 1123456788899999999
Q ss_pred CHHHHHHHHHHH--HHHHHHHHHhHHhHHHHHHHHHHHHHHHHccCCCCCCCCCC-CCCCCcccccEEEe----------
Q 047286 439 TFGEVFKFLSEF--GCFWCLESTAVAPNADKAKGSAASIFEILESKPKIDWSSKD-GMTPSTVRGDIVFE---------- 505 (632)
Q Consensus 439 s~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~-~~~~~~~~g~I~f~---------- 505 (632)
++|.+++++... ...++.........++.+..+.+|+.++++.+++.+.+... .....+..++|+|+
T Consensus 269 t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~ 348 (529)
T TIGR02868 269 APATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGVVPAAGALGLGKPTLELRDLSFGYPGSP 348 (529)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCcccCCCCceEEEEEEEEecCCCC
Confidence 999998887432 22345556666778888999999999999876643211100 00001112234443
Q ss_pred -------------eEEEEEecCCCChHHHHHhhhcCCChhh------------h--------------------------
Q 047286 506 -------------HTVALVGENGNGKSTVISLAERFHNPEQ------------V-------------------------- 534 (632)
Q Consensus 506 -------------~~vaIVG~SGsGKSTL~~ll~r~y~~~~------------~-------------------------- 534 (632)
+++|||||||||||||+++|+|+|+|++ +
T Consensus 349 ~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eNI 428 (529)
T TIGR02868 349 PVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDNL 428 (529)
T ss_pred ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccccHHHHH
Confidence 3899999999999999999999999854 1
Q ss_pred ------------cHHHHHHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh
Q 047286 535 ------------IYSWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY 581 (632)
Q Consensus 535 ------------~~~~~~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~ 581 (632)
+.+....++++||.+||+||||.|||+|.+||||||||||||||+++
T Consensus 429 ~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~ 487 (529)
T TIGR02868 429 RLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLA 487 (529)
T ss_pred hccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhc
Confidence 01111226789999999999999999999999999999999999876
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=322.66 Aligned_cols=162 Identities=22% Similarity=0.285 Sum_probs=122.2
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC--------------------cH---Hhh-cceEEEcccCcc-cc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA--------------------PE---AEQ-EKIGLVSKEPIF-LF 139 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~--------------------~~---~~r-~~i~~v~Q~~~~-~~ 139 (632)
.+||++++||+++|+||||||||||+++|.|+.... .. ..+ ++++|++|++.. +.
T Consensus 27 ~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~ 106 (529)
T PRK15134 27 DVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLN 106 (529)
T ss_pred ceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCchhhcC
Confidence 499999999999999999999999999998664310 00 112 469999999742 22
Q ss_pred ccccccccccc------CCCC-CCHHHHHHHHHHccch-------hhHhhCCcccccccc-----------------cCC
Q 047286 140 CDFNEGQYIPY------GKQN-ASDEHIRPAVQLANAE-------KSIDKLPLGLDTVVA-----------------TNA 188 (632)
Q Consensus 140 ~~~~~~~~i~~------~~~~-~~~~~~~~~~~~~~l~-------~~i~~l~~g~~~~v~-----------------ts~ 188 (632)
......+++.+ +... ...+++.++++.+++. ..+.+||+|++++++ |++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~ 186 (529)
T PRK15134 107 PLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTA 186 (529)
T ss_pred chhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCc
Confidence 22222223321 1111 1235567788888874 346789999998883 999
Q ss_pred CCHHHHHHHHHHHHHHh-C-CceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcC
Q 047286 189 VDAQSERIVQAAMVKLV-T-NQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIED 246 (632)
Q Consensus 189 LD~~~~~~i~~~l~~~~-~-~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~ 246 (632)
||+.+++.+.+.|+++. + +.|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 187 LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 247 (529)
T PRK15134 187 LDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAATLFSA 247 (529)
T ss_pred cCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEeCCHHHHhhC
Confidence 99999999999999985 3 7899999999998865 999999999999999999887644
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=323.58 Aligned_cols=249 Identities=27% Similarity=0.361 Sum_probs=210.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------------------------------------
Q 047286 3 ACLPAIVIAGGITATVVAKLSCRGQIAYAEAEMLLSTQLEP--------------------------------------- 43 (632)
Q Consensus 3 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~--------------------------------------- 43 (632)
+++|+++++..++.+..++..++.++..++.++.+.|.+.|
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (686)
T TIGR03797 283 ALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLT 362 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566667777888889999999999999999999999943
Q ss_pred -----------------------CCcccHHHH-----------------HHHHHHHHHHHHHHHHHHHHhccCCCCCCC-
Q 047286 44 -----------------------LEDMPLGQT-----------------SLNVNAFAAGQAAACKMFETIERIPKINPY- 82 (632)
Q Consensus 44 -----------------------~~~~~~~~~-----------------~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~- 82 (632)
.+.+++|++ ...+..+++++.+.+|+.++++.+++.+..
T Consensus 363 ~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~ 442 (686)
T TIGR03797 363 VFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEAK 442 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCc
Confidence 344566653 334677899999999999999765432100
Q ss_pred ---------------------C-----CcEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCC---------------CCCc
Q 047286 83 ---------------------D-----NRFLQHVPSGTTVALVGQSGSGKSTVINLVESFR---------------FYAP 121 (632)
Q Consensus 83 ---------------------~-----~~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~---------------~~~~ 121 (632)
+ +++||+|++||.+||+||||||||||+|+|+|+- .+++
T Consensus 443 ~~~~~~~~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~ 522 (686)
T TIGR03797 443 TDPGKLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDV 522 (686)
T ss_pred CCCCCCCceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCH
Confidence 0 0199999999999999999999999999998441 1234
Q ss_pred HHhhcceEEEcccCcccccccccccccccCCCCCCHHHHHHHHHHccchhhHhhCCccccccc-----------------
Q 047286 122 EAEQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV----------------- 184 (632)
Q Consensus 122 ~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~~~v----------------- 184 (632)
..+|++++||+|+|++|.+|+++ |+.++++ .+++++.++++.+++++++.++|.|++|.+
T Consensus 523 ~~lr~~i~~v~Q~~~lf~gTI~e--Ni~~~~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRial 599 (686)
T TIGR03797 523 QAVRRQLGVVLQNGRLMSGSIFE--NIAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLI 599 (686)
T ss_pred HHHHhccEEEccCCccCcccHHH--HHhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHH
Confidence 45789999999999999999998 7988877 889999999999999999999999999887
Q ss_pred ---------------ccCCCCHHHHHHHHHHHHHHhCCceEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHhcCCCc
Q 047286 185 ---------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPEG 249 (632)
Q Consensus 185 ---------------~ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~~~~~ 249 (632)
+||+||+++++.+.+.|+++ ++|+|+|||+++.++.||+|++|++|+|+++|+|+|+++. ++
T Consensus 600 ARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~-~~ 676 (686)
T TIGR03797 600 ARALVRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAR-EG 676 (686)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhC-Cc
Confidence 29999999999999999886 5899999999999999999999999999999999999876 67
Q ss_pred HHHHHHHH
Q 047286 250 AYSQLVRL 257 (632)
Q Consensus 250 ~~~~~~~~ 257 (632)
.|.++++.
T Consensus 677 ~y~~l~~~ 684 (686)
T TIGR03797 677 LFAQLARR 684 (686)
T ss_pred HHHHHHHh
Confidence 88887754
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=341.11 Aligned_cols=204 Identities=25% Similarity=0.277 Sum_probs=157.7
Q ss_pred HHhhhhHHhhcCCcCHHHHHHHHHHHH--HHHHHHHHhHHhHHHHHHHHHHHHHHHHccCCCCCCCCC----C--CC---
Q 047286 425 CFFIGSKLVEHGDATFGEVFKFLSEFG--CFWCLESTAVAPNADKAKGSAASIFEILESKPKIDWSSK----D--GM--- 493 (632)
Q Consensus 425 ~~~~g~~~v~~g~~s~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~----~--~~--- 493 (632)
++++|++++..|.++++.+++++..+. ..++..+......+..+..+.+|+.++++.++....+.+ . ..
T Consensus 539 ~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~~~~~~~~~~~I~~~ 618 (1622)
T PLN03130 539 VVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLLPNPPLEPGLPAISIK 618 (1622)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCcccCCCCceEEE
Confidence 455788888899999999988774333 234556666677888999999999999875433111000 0 00
Q ss_pred -------------CCCcccccEEEeeEEEEEecCCCChHHHHHhhhcCCChhh-hc------------------------
Q 047286 494 -------------TPSTVRGDIVFEHTVALVGENGNGKSTVISLAERFHNPEQ-VI------------------------ 535 (632)
Q Consensus 494 -------------~~~~~~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~-~~------------------------ 535 (632)
...+++-+|+-++++|||||||||||||+++|.|+|+|.+ ..
T Consensus 619 nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~LfngTIreN 698 (1622)
T PLN03130 619 NGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDN 698 (1622)
T ss_pred eeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCCCHHHH
Confidence 0111112334445899999999999999999999998854 10
Q ss_pred -------------HHHHHHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh---------------------
Q 047286 536 -------------YSWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY--------------------- 581 (632)
Q Consensus 536 -------------~~~~~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~--------------------- 581 (632)
......++++++..||+|++|.|||+|.+||||||||||||||+++
T Consensus 699 I~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~ 778 (1622)
T PLN03130 699 ILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQ 778 (1622)
T ss_pred HhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHH
Confidence 1111225678999999999999999999999999999999999654
Q ss_pred ---------------hccccchhhhhcCCEEEEEeCCeEeeecChHHHhccCCchhHHHHHhh
Q 047286 582 ---------------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKITDGTYASLTALH 629 (632)
Q Consensus 582 ---------------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~~~~ 629 (632)
|++||+++.++.||+|++|++|+|+|+|+|+||+++ ++.|+++++.+
T Consensus 779 I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~~-~~~~~~l~~~~ 840 (1622)
T PLN03130 779 VFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNN-GPLFQKLMENA 840 (1622)
T ss_pred HHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHhc-chhHHHHHHhc
Confidence 789999999999999999999999999999999987 89999998754
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=307.64 Aligned_cols=253 Identities=23% Similarity=0.174 Sum_probs=180.4
Q ss_pred hhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhH-------------
Q 047286 348 IGAVGARLSTDASAVRSVVGDALGLIIQNIATIAAGLVIAFTA-WKLAFITLAVPSLTIAEGYLKKK------------- 413 (632)
Q Consensus 348 ~G~l~srls~D~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~l~lv~l~~~~l~~~~~~~~~~------------- 413 (632)
.|++++|+++|++.+++.+...+..++..++.+++.+++++.. |.+++++++..|+.+...+...+
T Consensus 100 ~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 179 (529)
T TIGR02857 100 SGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPIFMILIGWAAQAAARKQWAAL 179 (529)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4999999999999999999888888888877777777776666 88888777766655432211110
Q ss_pred ---------------------------HHHHHH---------------------------HHHHHHHhhhhHHhhcCCcC
Q 047286 414 ---------------------------KNYERL---------------------------HINAFCFFIGSKLVEHGDAT 439 (632)
Q Consensus 414 ---------------------------~~~~~~---------------------------~~~~~~~~~g~~~v~~g~~s 439 (632)
+.+.+. ....+++++++..+..|.++
T Consensus 180 ~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t 259 (529)
T TIGR02857 180 SRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLSVALVAVYIGFRLLAGDLD 259 (529)
T ss_pred HHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 000000 00112234566677799999
Q ss_pred HHHHHHHHHHH--HHHHHHHHHhHHhHHHHHHHHHHHHHHHHccCCCCCCCCCCC------CC---------------CC
Q 047286 440 FGEVFKFLSEF--GCFWCLESTAVAPNADKAKGSAASIFEILESKPKIDWSSKDG------MT---------------PS 496 (632)
Q Consensus 440 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~------~~---------------~~ 496 (632)
+|.++++.... ...++..........+++..+.+|+.++++.+++........ .. ..
T Consensus 260 ~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~il~ 339 (529)
T TIGR02857 260 LATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGKAPVTAAPAPSLEFSGLSVAYPGRRAPALR 339 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcCCCCCCCCeEEEEEEEEECCCCCccccc
Confidence 99999877433 233456667777888999999999999997543321110000 00 00
Q ss_pred cccccEEEeeEEEEEecCCCChHHHHHhhhcCCChhh------------h------------------------------
Q 047286 497 TVRGDIVFEHTVALVGENGNGKSTVISLAERFHNPEQ------------V------------------------------ 534 (632)
Q Consensus 497 ~~~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~------------~------------------------------ 534 (632)
+++-+|+.++++|||||||||||||+++|.|+|+|++ +
T Consensus 340 ~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~ 419 (529)
T TIGR02857 340 PVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLA 419 (529)
T ss_pred ceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhcc
Confidence 0111233334899999999999999999999999843 0
Q ss_pred ---------cHHHHHHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh------------------------
Q 047286 535 ---------IYSWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY------------------------ 581 (632)
Q Consensus 535 ---------~~~~~~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~------------------------ 581 (632)
+.+....++++|+.++|+||||.+||+|.+|||||||||+||||+++
T Consensus 420 ~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~ 499 (529)
T TIGR02857 420 RPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTE 499 (529)
T ss_pred CCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHH
Confidence 01111226789999999999999999999999999999999999766
Q ss_pred -----------hccccchhhhhcCCEEEEE
Q 047286 582 -----------CGCGSPPYHYKNADITSVV 600 (632)
Q Consensus 582 -----------~~iahrl~~~~~aD~I~vl 600 (632)
++||||+++++.||+|+||
T Consensus 500 ~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 500 ALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred HHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 7899999999999999986
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-34 Score=290.47 Aligned_cols=211 Identities=35% Similarity=0.535 Sum_probs=189.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCC----------------------------cEEEEeeCCCEEEE
Q 047286 47 MPLGQTSLNVNAFAAGQAAACKMFETIERIPKINPYDN----------------------------RFLQHVPSGTTVAL 98 (632)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~----------------------------~~~~~i~~Ge~~~i 98 (632)
+|+.-.+..+-.+|+...-.+++++++++++++.+... ++||++.+|+.+|+
T Consensus 490 ~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P~a~pl~~~~G~i~fsnvtF~Y~p~k~vl~disF~v~pGktvAl 569 (790)
T KOG0056|consen 490 MPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPGAPPLKVTQGKIEFSNVTFAYDPGKPVLSDISFTVQPGKTVAL 569 (790)
T ss_pred CchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCCCCCCccccCCeEEEEEeEEecCCCCceeecceEEecCCcEEEE
Confidence 45666677788899999999999999999887542110 19999999999999
Q ss_pred EcCCCchHHHHHHHHHhCCCCCc-----------------HHhhcceEEEcccCcccccccccccccccCCCCCCHHHHH
Q 047286 99 VGQSGSGKSTVINLVESFRFYAP-----------------EAEQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIR 161 (632)
Q Consensus 99 vG~sGsGKSTLl~ll~~~~~~~~-----------------~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 161 (632)
|||||+||||+++++- ++++. ..+|++||+||||..+|+.++.. ||.++++.+++|++.
T Consensus 570 VG~SGaGKSTimRlLf--Rffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~y--NIryak~~Asneevy 645 (790)
T KOG0056|consen 570 VGPSGAGKSTIMRLLF--RFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILY--NIRYAKPSASNEEVY 645 (790)
T ss_pred ECCCCCchhHHHHHHH--HHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeee--heeecCCCCChHHHH
Confidence 9999999999999996 55542 23799999999999999999988 799999999999999
Q ss_pred HHHHHccchhhHhhCCccccccc--------------------------------ccCCCCHHHHHHHHHHHHHHhCCce
Q 047286 162 PAVQLANAEKSIDKLPLGLDTVV--------------------------------ATNAVDAQSERIVQAAMVKLVTNQT 209 (632)
Q Consensus 162 ~~~~~~~l~~~i~~l~~g~~~~v--------------------------------~ts~LD~~~~~~i~~~l~~~~~~~t 209 (632)
++++++++++.|..+|+|++|+| +||+||..+++.|+.++.++..++|
T Consensus 646 aAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RT 725 (790)
T KOG0056|consen 646 AAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRT 725 (790)
T ss_pred HHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCc
Confidence 99999999999999999999888 2899999999999999999999999
Q ss_pred EEEEecCchHHhhcCeEEEEeCCeEEEecChhHHhcCCCcHHHHHHHHHhhh
Q 047286 210 VVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQEGA 261 (632)
Q Consensus 210 viiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~~~~~~ 261 (632)
.|+|+|+++++-+||.|+++++|+|+|.|+|+|+...+.+.|.++++.|+..
T Consensus 726 tIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG~Ya~MWq~qqa~ 777 (790)
T KOG0056|consen 726 TIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGAYADMWQAQQAM 777 (790)
T ss_pred eEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCCcHHHHHHHHHhc
Confidence 9999999999999999999999999999999999988889999999876543
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-33 Score=314.18 Aligned_cols=253 Identities=33% Similarity=0.461 Sum_probs=211.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------------------------------------
Q 047286 3 ACLPAIVIAGGITATVVAKLSCRGQIAYAEAEMLLSTQLEP--------------------------------------- 43 (632)
Q Consensus 3 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~--------------------------------------- 43 (632)
+++|+++++..++.+..++..++.++..++.++.+.|.+.|
T Consensus 173 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (582)
T PRK11176 173 VIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISD 252 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777888888899999999999999999999943
Q ss_pred -----------------------CCcccHHHH-----------------HHHHHHHHHHHHHHHHHHHHhccCCCCCC--
Q 047286 44 -----------------------LEDMPLGQT-----------------SLNVNAFAAGQAAACKMFETIERIPKINP-- 81 (632)
Q Consensus 44 -----------------------~~~~~~~~~-----------------~~~~~~~~~~~~a~~ri~~~~~~~~~~~~-- 81 (632)
.+.+++|++ ...+..+++++.+.+|+.++++.+++.+.
T Consensus 253 ~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~ 332 (582)
T PRK11176 253 PIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEGK 332 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCC
Confidence 234555553 23466788999999999999975433110
Q ss_pred --------------------CC-----CcEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC---------------Cc
Q 047286 82 --------------------YD-----NRFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY---------------AP 121 (632)
Q Consensus 82 --------------------~~-----~~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~---------------~~ 121 (632)
.. +.+|++|++||.++|+||||||||||+++|+|+-.+ +.
T Consensus 333 ~~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~ 412 (582)
T PRK11176 333 RVIERAKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTL 412 (582)
T ss_pred cCCCCCCCeEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCH
Confidence 00 128999999999999999999999999999854211 12
Q ss_pred HHhhcceEEEcccCcccccccccccccccCCCC-CCHHHHHHHHHHccchhhHhhCCccccccc----------------
Q 047286 122 EAEQEKIGLVSKEPIFLFCDFNEGQYIPYGKQN-ASDEHIRPAVQLANAEKSIDKLPLGLDTVV---------------- 184 (632)
Q Consensus 122 ~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~l~~~i~~l~~g~~~~v---------------- 184 (632)
..+++.++||||++.+|.+|+++ |+.++.++ .++++++++++.+++++++.++|+|++|.+
T Consensus 413 ~~~~~~i~~v~Q~~~lf~~Ti~~--Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~ 490 (582)
T PRK11176 413 ASLRNQVALVSQNVHLFNDTIAN--NIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIA 490 (582)
T ss_pred HHHHhhceEEccCceeecchHHH--HHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHH
Confidence 34688999999999999999988 79888644 689999999999999999999999999877
Q ss_pred ----------------ccCCCCHHHHHHHHHHHHHHhCCceEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHhcCCC
Q 047286 185 ----------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPE 248 (632)
Q Consensus 185 ----------------~ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~~~~ 248 (632)
+||+||+++++.+.+.|.++.+++|+|+|||+++.++.||+|++|++|++++.|+|+++++. +
T Consensus 491 LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~~-~ 569 (582)
T PRK11176 491 IARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQ-N 569 (582)
T ss_pred HHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHhC-C
Confidence 29999999999999999998888999999999999999999999999999999999999877 6
Q ss_pred cHHHHHHHHH
Q 047286 249 GAYSQLVRLQ 258 (632)
Q Consensus 249 ~~~~~~~~~~ 258 (632)
+.|++++..+
T Consensus 570 ~~y~~l~~~~ 579 (582)
T PRK11176 570 GVYAQLHKMQ 579 (582)
T ss_pred ChHHHHHHHH
Confidence 7888887643
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-33 Score=310.18 Aligned_cols=158 Identities=16% Similarity=0.250 Sum_probs=117.8
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHH----hhcceEEEcccCcccccccccccccccCC--------
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEA----EQEKIGLVSKEPIFLFCDFNEGQYIPYGK-------- 152 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~----~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~-------- 152 (632)
.+||+|++|++++|+||||||||||+++|+|+...+... .+..++|++|++.++. ..+..+|+.++.
T Consensus 19 ~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~-~~tv~e~l~~~~~~~~~~~~ 97 (530)
T PRK15064 19 NISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFE-EFTVLDTVIMGHTELWEVKQ 97 (530)
T ss_pred CCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCC-CCcHHHHHHHhhHHHHHHHH
Confidence 399999999999999999999999999999653222111 1356999999986543 222222333211
Q ss_pred --------C----------------------CCCHHHHHHHHHHccchh-----hHhhCCccccccc-------------
Q 047286 153 --------Q----------------------NASDEHIRPAVQLANAEK-----SIDKLPLGLDTVV------------- 184 (632)
Q Consensus 153 --------~----------------------~~~~~~~~~~~~~~~l~~-----~i~~l~~g~~~~v------------- 184 (632)
. ....+++.++++..++.+ .+.+||+|+++++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lL 177 (530)
T PRK15064 98 ERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDIL 177 (530)
T ss_pred HHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 0 001245667777777642 3678999999888
Q ss_pred ----ccCCCCHHHHHHHHHHHHHHhCCceEEEEecCchHHhh-cCeEEEEeCCeEE-EecChhHHhc
Q 047286 185 ----ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRN-ADCIIMVSKGKIV-EKGTHDELIE 245 (632)
Q Consensus 185 ----~ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~-aD~i~vl~~G~i~-~~g~~~el~~ 245 (632)
+|++||+.+++.+.+.|.+ .+.|+|++||+++.+.. ||+|++|++|+++ ..|+++++..
T Consensus 178 lLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~ 242 (530)
T PRK15064 178 LLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLNSVCTHMADLDYGELRVYPGNYDEYMT 242 (530)
T ss_pred EEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhhcceEEEEeCCEEEEecCCHHHHHH
Confidence 3999999999999999875 47899999999998865 9999999999994 7888887653
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-33 Score=320.77 Aligned_cols=246 Identities=35% Similarity=0.527 Sum_probs=206.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------------------------------------
Q 047286 2 AACLPAIVIAGGITATVVAKLSCRGQIAYAEAEMLLSTQLEP-------------------------------------- 43 (632)
Q Consensus 2 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-------------------------------------- 43 (632)
++.+|+++++..++.++.++..++.++..++.++.+.|.+.|
T Consensus 308 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (711)
T TIGR00958 308 LINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGY 387 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677778888899999999999999999999999999943
Q ss_pred ------------------------CCcccHHHH-----------------HHHHHHHHHHHHHHHHHHHHhccCCCCC--
Q 047286 44 ------------------------LEDMPLGQT-----------------SLNVNAFAAGQAAACKMFETIERIPKIN-- 80 (632)
Q Consensus 44 ------------------------~~~~~~~~~-----------------~~~~~~~~~~~~a~~ri~~~~~~~~~~~-- 80 (632)
.+.+++|++ ...+..+++++++++|++++++.+++.+
T Consensus 388 ~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~ 467 (711)
T TIGR00958 388 LWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLT 467 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence 234455543 3346778999999999999998754321
Q ss_pred ----C---------------C-C-------CcEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCc------------
Q 047286 81 ----P---------------Y-D-------NRFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAP------------ 121 (632)
Q Consensus 81 ----~---------------~-~-------~~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~------------ 121 (632)
+ + + +++||++++||.++|+||||||||||+++|.|+ ++|
T Consensus 468 ~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl--~~p~~G~I~idg~~i 545 (711)
T TIGR00958 468 GTLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNL--YQPTGGQVLLDGVPL 545 (711)
T ss_pred CCCCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhc--cCCCCCEEEECCEEH
Confidence 0 0 0 128999999999999999999999999999843 433
Q ss_pred -----HHhhcceEEEcccCcccccccccccccccCCCCCCHHHHHHHHHHccchhhHhhCCccccccc------------
Q 047286 122 -----EAEQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV------------ 184 (632)
Q Consensus 122 -----~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~~~v------------ 184 (632)
..+|++++||+|+|++|.+|+++ |+.++.++.+++++.++++.+++++++.++|+|++|.+
T Consensus 546 ~~~~~~~lr~~i~~v~Q~~~lF~gTIre--NI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQk 623 (711)
T TIGR00958 546 VQYDHHYLHRQVALVGQEPVLFSGSVRE--NIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQK 623 (711)
T ss_pred HhcCHHHHHhhceEEecCccccccCHHH--HHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHH
Confidence 34688999999999999999998 79998877889999999999999999999999999877
Q ss_pred --------------------ccCCCCHHHHHHHHHHHHHHhCCceEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHh
Q 047286 185 --------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELI 244 (632)
Q Consensus 185 --------------------~ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~ 244 (632)
+||+||+++++.+.+ ....+++|+|+|||+++.++.||+|++|++|+|+++|+|+|++
T Consensus 624 QRlalARALl~~p~ILILDEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~ 701 (711)
T TIGR00958 624 QRIAIARALVRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLM 701 (711)
T ss_pred HHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHH
Confidence 399999999999998 3334689999999999999999999999999999999999998
Q ss_pred cCCCcHHHHH
Q 047286 245 EDPEGAYSQL 254 (632)
Q Consensus 245 ~~~~~~~~~~ 254 (632)
++ ++.|.++
T Consensus 702 ~~-~~~y~~l 710 (711)
T TIGR00958 702 ED-QGCYKHL 710 (711)
T ss_pred hC-CCchHhc
Confidence 76 5566653
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=317.32 Aligned_cols=159 Identities=18% Similarity=0.275 Sum_probs=120.8
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCC--C-------C-----------------------------------
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRF--Y-------A----------------------------------- 120 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~--~-------~----------------------------------- 120 (632)
.+||++++|++++|+||||||||||+++|+|+.. . .
T Consensus 18 ~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~ 97 (520)
T TIGR03269 18 NISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFW 97 (520)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccccccccccccccchhhh
Confidence 3999999999999999999999999999997631 1 0
Q ss_pred ---c---HHhhcceEEEccc-CcccccccccccccccCCC--CCC----HHHHHHHHHHccchh----hHhhCCcccccc
Q 047286 121 ---P---EAEQEKIGLVSKE-PIFLFCDFNEGQYIPYGKQ--NAS----DEHIRPAVQLANAEK----SIDKLPLGLDTV 183 (632)
Q Consensus 121 ---~---~~~r~~i~~v~Q~-~~~~~~~~~~~~~i~~~~~--~~~----~~~~~~~~~~~~l~~----~i~~l~~g~~~~ 183 (632)
. ..+++.++|++|+ +.++. ..+..+|+.++.. ... .+++.++++.+++.+ .+.+||+|++++
T Consensus 98 ~~~~~~~~~~~~~i~~v~q~~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qr 176 (520)
T TIGR03269 98 NLSDKLRRRIRKRIAIMLQRTFALYG-DDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQR 176 (520)
T ss_pred ccCHHHHHHhhhcEEEEeccccccCC-CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCcccCCHHHHHH
Confidence 0 0135679999997 44443 2232335543211 111 345667788887754 457789999988
Q ss_pred cc-----------------cCCCCHHHHHHHHHHHHHHh-C-CceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHH
Q 047286 184 VA-----------------TNAVDAQSERIVQAAMVKLV-T-NQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDEL 243 (632)
Q Consensus 184 v~-----------------ts~LD~~~~~~i~~~l~~~~-~-~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el 243 (632)
++ |++||+.+++.+.+.|+++. + ++|+|+|||+++.+.. ||+|++|++|+++..|+++++
T Consensus 177 v~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 256 (520)
T TIGR03269 177 VVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEIKEEGTPDEV 256 (520)
T ss_pred HHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEeCCEEeeecCHHHH
Confidence 83 99999999999999999984 3 7899999999998865 999999999999988887765
Q ss_pred h
Q 047286 244 I 244 (632)
Q Consensus 244 ~ 244 (632)
.
T Consensus 257 ~ 257 (520)
T TIGR03269 257 V 257 (520)
T ss_pred H
Confidence 3
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-33 Score=321.18 Aligned_cols=250 Identities=25% Similarity=0.370 Sum_probs=210.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------------------------------------
Q 047286 2 AACLPAIVIAGGITATVVAKLSCRGQIAYAEAEMLLSTQLEP-------------------------------------- 43 (632)
Q Consensus 2 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-------------------------------------- 43 (632)
++++|+++++.+++.+..++..++.++..++.++.+.|.+.|
T Consensus 302 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (708)
T TIGR01193 302 LLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQ 381 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778888888899999999999999999999999999943
Q ss_pred ------------------------CCcccHHHH-----------------HHHHHHHHHHHHHHHHHHHHhccCCCCCCC
Q 047286 44 ------------------------LEDMPLGQT-----------------SLNVNAFAAGQAAACKMFETIERIPKINPY 82 (632)
Q Consensus 44 ------------------------~~~~~~~~~-----------------~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~ 82 (632)
.+.+++|++ ...+..+++++++.+|+.++++.+++.+..
T Consensus 382 ~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~ 461 (708)
T TIGR01193 382 QAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINK 461 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccc
Confidence 234555543 334667899999999999999765432100
Q ss_pred ----------------------C------CcEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCC---------------C
Q 047286 83 ----------------------D------NRFLQHVPSGTTVALVGQSGSGKSTVINLVESFRF---------------Y 119 (632)
Q Consensus 83 ----------------------~------~~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~---------------~ 119 (632)
+ +.+|++|++|+.++|+||||||||||+++|.|+-. +
T Consensus 462 ~~~~~~~~~~~~I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~ 541 (708)
T TIGR01193 462 KKRTELNNLNGDIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDI 541 (708)
T ss_pred ccccCCCCCCCcEEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHc
Confidence 0 02899999999999999999999999999984321 1
Q ss_pred CcHHhhcceEEEcccCcccccccccccccccC-CCCCCHHHHHHHHHHccchhhHhhCCccccccc--------------
Q 047286 120 APEAEQEKIGLVSKEPIFLFCDFNEGQYIPYG-KQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV-------------- 184 (632)
Q Consensus 120 ~~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~~~v-------------- 184 (632)
++..+|++++||+|+|++|.+|+++ |+.++ .++.+++++.++++.+++++++.++|.|++|.+
T Consensus 542 ~~~~lr~~i~~v~Q~~~lf~gTI~e--Ni~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQR 619 (708)
T TIGR01193 542 DRHTLRQFINYLPQEPYIFSGSILE--NLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQR 619 (708)
T ss_pred CHHHHHHheEEEecCceehhHHHHH--HHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHH
Confidence 2335789999999999999999998 79888 456789999999999999999999999999887
Q ss_pred ------------------ccCCCCHHHHHHHHHHHHHHhCCceEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHhcC
Q 047286 185 ------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIED 246 (632)
Q Consensus 185 ------------------~ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~~ 246 (632)
+||+||+++++.+.+.|+++ +++|+|+|||+++.++.||+|++|++|++++.|+|+|+++.
T Consensus 620 ialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~~ 698 (708)
T TIGR01193 620 IALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDR 698 (708)
T ss_pred HHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHhc
Confidence 39999999999999999885 67999999999999999999999999999999999999876
Q ss_pred CCcHHHHHH
Q 047286 247 PEGAYSQLV 255 (632)
Q Consensus 247 ~~~~~~~~~ 255 (632)
++.|..++
T Consensus 699 -~~~y~~l~ 706 (708)
T TIGR01193 699 -NGFYASLI 706 (708)
T ss_pred -CCcHHHHh
Confidence 67787765
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=312.88 Aligned_cols=159 Identities=23% Similarity=0.340 Sum_probs=124.4
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC---------------cHHh-hcceEEEcccCccccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA---------------PEAE-QEKIGLVSKEPIFLFCDFNEGQYI 148 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~---------------~~~~-r~~i~~v~Q~~~~~~~~~~~~~~i 148 (632)
.+||++++|++++|+||||||||||+++|.|+.... +... +..++|++|++.++. ..+..+|+
T Consensus 29 ~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~-~~tv~e~l 107 (510)
T PRK15439 29 GIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFP-NLSVKENI 107 (510)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCC-CCcHHHHh
Confidence 399999999999999999999999999998653211 1111 246999999986544 33333366
Q ss_pred ccCCCC--CCHHHHHHHHHHccch----hhHhhCCccccccc-----------------ccCCCCHHHHHHHHHHHHHHh
Q 047286 149 PYGKQN--ASDEHIRPAVQLANAE----KSIDKLPLGLDTVV-----------------ATNAVDAQSERIVQAAMVKLV 205 (632)
Q Consensus 149 ~~~~~~--~~~~~~~~~~~~~~l~----~~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l~~~~ 205 (632)
.++... ...+++.++++..++. ..+.+||+|+++++ +|++||+.+++.+.+.|+++.
T Consensus 108 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~ 187 (510)
T PRK15439 108 LFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELL 187 (510)
T ss_pred hcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
Confidence 654321 1235667788887764 45678999999888 399999999999999999885
Q ss_pred -CCceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHh
Q 047286 206 -TNQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELI 244 (632)
Q Consensus 206 -~~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~ 244 (632)
+++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 188 ~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 228 (510)
T PRK15439 188 AQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLS 228 (510)
T ss_pred HCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcC
Confidence 47899999999998865 9999999999999999888764
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-33 Score=311.82 Aligned_cols=249 Identities=25% Similarity=0.368 Sum_probs=205.9
Q ss_pred hHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------------------------------------
Q 047286 4 CLPAIVI-AGGITATVVAKLSCRGQIAYAEAEMLLSTQLEP--------------------------------------- 43 (632)
Q Consensus 4 ~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~--------------------------------------- 43 (632)
++|++++ +..++.++.++..++.++..+++++.+.|.+.|
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (574)
T PRK11160 169 ILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLTGLSQ 248 (574)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3454443 346677888888999999999999999999954
Q ss_pred ----------------------CCcccHHHH------------------HHHHHHHHHHHHHHHHHHHHhccCCCCC-C-
Q 047286 44 ----------------------LEDMPLGQT------------------SLNVNAFAAGQAAACKMFETIERIPKIN-P- 81 (632)
Q Consensus 44 ----------------------~~~~~~~~~------------------~~~~~~~~~~~~a~~ri~~~~~~~~~~~-~- 81 (632)
.+.+++|.+ ...+..++++++|++|+.++++.+++.+ +
T Consensus 249 ~~~~~~~~~~~~~i~~~g~~~~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~~~ 328 (574)
T PRK11160 249 ALMILANGLTVVLMLWLAAGGVGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVTFPT 328 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCc
Confidence 122333332 2235677899999999999998755421 0
Q ss_pred -------------------C-C------CcEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCC---------------CC
Q 047286 82 -------------------Y-D------NRFLQHVPSGTTVALVGQSGSGKSTVINLVESFRF---------------YA 120 (632)
Q Consensus 82 -------------------~-~------~~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~---------------~~ 120 (632)
+ + +++||++++||+++|+||||||||||+++|+|+.. ++
T Consensus 329 ~~~~~~~~~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~ 408 (574)
T PRK11160 329 TSTAAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYS 408 (574)
T ss_pred ccCCCCCCCeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCC
Confidence 0 0 01899999999999999999999999999984321 12
Q ss_pred cHHhhcceEEEcccCcccccccccccccccCCCCCCHHHHHHHHHHccchhhHhhCCccccccc----------------
Q 047286 121 PEAEQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV---------------- 184 (632)
Q Consensus 121 ~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~~~v---------------- 184 (632)
+..+|++++||+|+|.+|.+++.+ |+.++.++.+++++.++++.+++++++.+ |+|++|.+
T Consensus 409 ~~~~r~~i~~v~Q~~~lf~~ti~~--Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgGqrqRia 485 (574)
T PRK11160 409 EAALRQAISVVSQRVHLFSATLRD--NLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRLG 485 (574)
T ss_pred HHHHHhheeEEcccchhhcccHHH--HhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHHHHHHHH
Confidence 334788999999999999999988 79998877889999999999999999999 99999877
Q ss_pred ----------------ccCCCCHHHHHHHHHHHHHHhCCceEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHhcCCC
Q 047286 185 ----------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPE 248 (632)
Q Consensus 185 ----------------~ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~~~~ 248 (632)
+|++||+++++.+.+.+.++.+++|+|+|||+++.++.||+|++|++|++++.|+|+|+++. +
T Consensus 486 lARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~ 564 (574)
T PRK11160 486 IARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQ-Q 564 (574)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHHHHhc-C
Confidence 29999999999999999998889999999999999999999999999999999999999877 6
Q ss_pred cHHHHHHH
Q 047286 249 GAYSQLVR 256 (632)
Q Consensus 249 ~~~~~~~~ 256 (632)
+.|.++++
T Consensus 565 g~y~~l~~ 572 (574)
T PRK11160 565 GRYYQLKQ 572 (574)
T ss_pred cHHHHHHh
Confidence 78888764
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-33 Score=308.29 Aligned_cols=158 Identities=16% Similarity=0.275 Sum_probs=122.6
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC--Cc---------------H-HhhcceEEEcccCccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY--AP---------------E-AEQEKIGLVSKEPIFLFCDFNEGQ 146 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~--~~---------------~-~~r~~i~~v~Q~~~~~~~~~~~~~ 146 (632)
.+||++++||+++|+||||||||||+++|+|+... .. . ..++.++|++|++.++. .++..+
T Consensus 23 ~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~-~~tv~e 101 (506)
T PRK13549 23 NVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVK-ELSVLE 101 (506)
T ss_pred ceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCC-CCcHHH
Confidence 39999999999999999999999999999976432 00 0 12467999999986543 333333
Q ss_pred ccccCCC-----CCC----HHHHHHHHHHccch----hhHhhCCcccccccc-----------------cCCCCHHHHHH
Q 047286 147 YIPYGKQ-----NAS----DEHIRPAVQLANAE----KSIDKLPLGLDTVVA-----------------TNAVDAQSERI 196 (632)
Q Consensus 147 ~i~~~~~-----~~~----~~~~~~~~~~~~l~----~~i~~l~~g~~~~v~-----------------ts~LD~~~~~~ 196 (632)
|+.++.. ..+ .+++.++++..++. ..+.+||+|++++++ |++||+.+++.
T Consensus 102 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~ 181 (506)
T PRK13549 102 NIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAV 181 (506)
T ss_pred HhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHH
Confidence 6655421 011 23566777777764 457889999998883 99999999999
Q ss_pred HHHHHHHHh-CCceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHH
Q 047286 197 VQAAMVKLV-TNQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDEL 243 (632)
Q Consensus 197 i~~~l~~~~-~~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el 243 (632)
+.+.|.++. ++.|+|++||+++.+.. ||++++|++|+++..|+.+++
T Consensus 182 l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 182 LLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred HHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccC
Confidence 999999985 47899999999998865 999999999999999876664
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-33 Score=318.69 Aligned_cols=243 Identities=23% Similarity=0.377 Sum_probs=208.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------------------------------------
Q 047286 2 AACLPAIVIAGGITATVVAKLSCRGQIAYAEAEMLLSTQLEP-------------------------------------- 43 (632)
Q Consensus 2 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-------------------------------------- 43 (632)
++.+|+++++.+++.+..++..++.++..++.++.+.|.+.|
T Consensus 292 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (694)
T TIGR03375 292 LVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLA 371 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888888899999999999999999999999999943
Q ss_pred ------------------------CCcccHHHH-----------------HHHHHHHHHHHHHHHHHHHHhccCCCCCCC
Q 047286 44 ------------------------LEDMPLGQT-----------------SLNVNAFAAGQAAACKMFETIERIPKINPY 82 (632)
Q Consensus 44 ------------------------~~~~~~~~~-----------------~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~ 82 (632)
.+.+++|++ ...+..++.++++.+|+.++++.+++....
T Consensus 372 ~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~ 451 (694)
T TIGR03375 372 TNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEG 451 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Confidence 344566653 234677899999999999999875432100
Q ss_pred ------------------------C-----CcEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCC---------------
Q 047286 83 ------------------------D-----NRFLQHVPSGTTVALVGQSGSGKSTVINLVESFRF--------------- 118 (632)
Q Consensus 83 ------------------------~-----~~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~--------------- 118 (632)
. +.+||+|++||.++|+||||||||||+++|.|+-.
T Consensus 452 ~~~~~~~~~~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~ 531 (694)
T TIGR03375 452 TRFLHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQ 531 (694)
T ss_pred CCCCCCCCccceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhh
Confidence 0 02899999999999999999999999999984311
Q ss_pred CCcHHhhcceEEEcccCcccccccccccccccCCCCCCHHHHHHHHHHccchhhHhhCCccccccc--------------
Q 047286 119 YAPEAEQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV-------------- 184 (632)
Q Consensus 119 ~~~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~~~v-------------- 184 (632)
+++..+|++++||+|++.+|.+|+.+ |+.+++++.+++++.++++.+++++++.++|.|++|.+
T Consensus 532 ~~~~~lr~~i~~v~Q~~~lf~~TI~e--Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQR 609 (694)
T TIGR03375 532 IDPADLRRNIGYVPQDPRLFYGTLRD--NIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQA 609 (694)
T ss_pred CCHHHHHhccEEECCChhhhhhhHHH--HHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHH
Confidence 12335789999999999999999998 79998877899999999999999999999999999887
Q ss_pred ------------------ccCCCCHHHHHHHHHHHHHHhCCceEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHhcC
Q 047286 185 ------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIED 246 (632)
Q Consensus 185 ------------------~ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~~ 246 (632)
+||+||+++++.+.+.|.++.+++|+|+|||+++.++.||+|++|++|++++.|+|+|+++.
T Consensus 610 lalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 610 VALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 39999999999999999999889999999999999999999999999999999999999754
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=311.06 Aligned_cols=158 Identities=20% Similarity=0.331 Sum_probs=121.8
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC---------------cHH-hhcceEEEcccCccccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA---------------PEA-EQEKIGLVSKEPIFLFCDFNEGQYI 148 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~---------------~~~-~r~~i~~v~Q~~~~~~~~~~~~~~i 148 (632)
.+||++++|++++|+||||||||||+++|+|+...+ +.. .++.++|++|++.++. .++..+|+
T Consensus 22 ~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~-~~tv~e~l 100 (501)
T PRK10762 22 GAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIP-QLTIAENI 100 (501)
T ss_pred eeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccC-CCcHHHHh
Confidence 399999999999999999999999999998653211 111 2457999999986543 33334466
Q ss_pred ccCCC------CCC----HHHHHHHHHHccch----hhHhhCCccccccc-----------------ccCCCCHHHHHHH
Q 047286 149 PYGKQ------NAS----DEHIRPAVQLANAE----KSIDKLPLGLDTVV-----------------ATNAVDAQSERIV 197 (632)
Q Consensus 149 ~~~~~------~~~----~~~~~~~~~~~~l~----~~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i 197 (632)
.++.. ..+ .+++.++++..++. ..+.+||+|+++++ +|++||+.+++.+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l 180 (501)
T PRK10762 101 FLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESL 180 (501)
T ss_pred hhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHH
Confidence 55321 111 23466777777764 45788999999888 3999999999999
Q ss_pred HHHHHHHh-CCceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHH
Q 047286 198 QAAMVKLV-TNQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDEL 243 (632)
Q Consensus 198 ~~~l~~~~-~~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el 243 (632)
.+.|+++. ++.|+|++||+++.+.. ||+|++|++|++++.|+.+++
T Consensus 181 ~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (501)
T PRK10762 181 FRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADL 228 (501)
T ss_pred HHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcC
Confidence 99999885 46899999999998865 999999999999998876654
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-33 Score=318.77 Aligned_cols=249 Identities=24% Similarity=0.311 Sum_probs=208.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------------------------------------
Q 047286 2 AACLPAIVIAGGITATVVAKLSCRGQIAYAEAEMLLSTQLEP-------------------------------------- 43 (632)
Q Consensus 2 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-------------------------------------- 43 (632)
++.+|+++++..++.+...+..++.++..++.++.+.|.+.|
T Consensus 300 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (710)
T TIGR03796 300 IAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQIL 379 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777778888888899999999999999999999843
Q ss_pred ------------------------CCcccHHHH-----------------HHHHHHHHHHHHHHHHHHHHhccCCCCCC-
Q 047286 44 ------------------------LEDMPLGQT-----------------SLNVNAFAAGQAAACKMFETIERIPKINP- 81 (632)
Q Consensus 44 ------------------------~~~~~~~~~-----------------~~~~~~~~~~~~a~~ri~~~~~~~~~~~~- 81 (632)
.+.+++|++ ...+..++.++.+.+|+.++++.+++...
T Consensus 380 ~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~ 459 (710)
T TIGR03796 380 GVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLE 459 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccc
Confidence 244555553 23467789999999999999976433210
Q ss_pred ------------C---------------C-------CcEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCC---------
Q 047286 82 ------------Y---------------D-------NRFLQHVPSGTTVALVGQSGSGKSTVINLVESFRF--------- 118 (632)
Q Consensus 82 ------------~---------------~-------~~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~--------- 118 (632)
. + +++||+|++||.++|+||||||||||+++|.|+-.
T Consensus 460 ~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~id 539 (710)
T TIGR03796 460 EEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFD 539 (710)
T ss_pred cccccccccccCCCCCCeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEC
Confidence 0 0 01899999999999999999999999999985421
Q ss_pred ------CCcHHhhcceEEEcccCcccccccccccccccCCCCCCHHHHHHHHHHccchhhHhhCCccccccc--------
Q 047286 119 ------YAPEAEQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV-------- 184 (632)
Q Consensus 119 ------~~~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~~~v-------- 184 (632)
+++..+|++++||+|+|++|.+|+++ |+.++.++.+++++.++++.+++++++.++|.|++|.+
T Consensus 540 g~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~e--Ni~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LS 617 (710)
T TIGR03796 540 GIPREEIPREVLANSVAMVDQDIFLFEGTVRD--NLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLS 617 (710)
T ss_pred CEeHHHCCHHHHHhheeEEecCChhhhccHHH--HhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCC
Confidence 12334789999999999999999988 78888777889999999999999999999999999887
Q ss_pred ------------------------ccCCCCHHHHHHHHHHHHHHhCCceEEEEecCchHHhhcCeEEEEeCCeEEEecCh
Q 047286 185 ------------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTH 240 (632)
Q Consensus 185 ------------------------~ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~ 240 (632)
+||+||+++++.+.+.+++ .++|+|+|||+++.++.||+|++|++|+++++|+|
T Consensus 618 GGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~ 695 (710)
T TIGR03796 618 GGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTH 695 (710)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCH
Confidence 3999999999999999987 58999999999999999999999999999999999
Q ss_pred hHHhcCCCcHHHHHH
Q 047286 241 DELIEDPEGAYSQLV 255 (632)
Q Consensus 241 ~el~~~~~~~~~~~~ 255 (632)
+|+++. ++.|.+++
T Consensus 696 ~~Ll~~-~~~y~~l~ 709 (710)
T TIGR03796 696 EELWAV-GGAYARLI 709 (710)
T ss_pred HHHHHc-CCcHHHHh
Confidence 999876 66777664
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=311.50 Aligned_cols=252 Identities=26% Similarity=0.404 Sum_probs=207.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------------------------------------
Q 047286 3 ACLPAIVIAGGITATVVAKLSCRGQIAYAEAEMLLSTQLEP--------------------------------------- 43 (632)
Q Consensus 3 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~--------------------------------------- 43 (632)
+++|+++++..++.++.++..++.++..++.++.+.|.+.|
T Consensus 173 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (592)
T PRK10790 173 MIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLL 252 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666677777888888888889999999999954
Q ss_pred -----------------------CCcccHHHH-----------------HHHHHHHHHHHHHHHHHHHHhccCCCCCC--
Q 047286 44 -----------------------LEDMPLGQT-----------------SLNVNAFAAGQAAACKMFETIERIPKINP-- 81 (632)
Q Consensus 44 -----------------------~~~~~~~~~-----------------~~~~~~~~~~~~a~~ri~~~~~~~~~~~~-- 81 (632)
.+.+++|.+ ...+..+++++.+++|+.++++.+++...
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~ 332 (592)
T PRK10790 253 RPLLSLFSALILCGLLMLFGFSASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYGND 332 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCC
Confidence 122333332 23456788999999999999975432110
Q ss_pred -----------------C--C----CcEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCC---------------CCcHH
Q 047286 82 -----------------Y--D----NRFLQHVPSGTTVALVGQSGSGKSTVINLVESFRF---------------YAPEA 123 (632)
Q Consensus 82 -----------------~--~----~~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~---------------~~~~~ 123 (632)
+ + +++||++++||.++|+|+||||||||+++|.|+-. +++..
T Consensus 333 ~~~~~~~~i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~ 412 (592)
T PRK10790 333 DRPLQSGRIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSV 412 (592)
T ss_pred ccCCCCCeEEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHH
Confidence 0 0 12899999999999999999999999999984321 12335
Q ss_pred hhcceEEEcccCcccccccccccccccCCCCCCHHHHHHHHHHccchhhHhhCCccccccc-------------------
Q 047286 124 EQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV------------------- 184 (632)
Q Consensus 124 ~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~~~v------------------- 184 (632)
+|++++||||+|.+|.+|+++ |+.++. +.+++++.++++.+++++++.++|+|++|.+
T Consensus 413 l~~~i~~v~Q~~~lF~~Ti~~--NI~~~~-~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialAR 489 (592)
T PRK10790 413 LRQGVAMVQQDPVVLADTFLA--NVTLGR-DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALAR 489 (592)
T ss_pred HHhheEEEccCCccccchHHH--HHHhCC-CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHH
Confidence 789999999999999999998 788886 6789999999999999999999999999877
Q ss_pred -------------ccCCCCHHHHHHHHHHHHHHhCCceEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHhcCCCcHH
Q 047286 185 -------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAY 251 (632)
Q Consensus 185 -------------~ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~~~~~~~ 251 (632)
+||+||+++++.+.+.|+++.+++|+|+|||+++.++.||+|++|++|++++.|+|+|+++. ++.|
T Consensus 490 aLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~-~~~y 568 (592)
T PRK10790 490 VLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAA-QGRY 568 (592)
T ss_pred HHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhC-CCHH
Confidence 39999999999999999998888999999999999999999999999999999999999877 6889
Q ss_pred HHHHHHH
Q 047286 252 SQLVRLQ 258 (632)
Q Consensus 252 ~~~~~~~ 258 (632)
+++++.+
T Consensus 569 ~~l~~~~ 575 (592)
T PRK10790 569 WQMYQLQ 575 (592)
T ss_pred HHHHHHH
Confidence 8888655
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=288.01 Aligned_cols=196 Identities=26% Similarity=0.280 Sum_probs=151.5
Q ss_pred HHHHHhhhhHHhhcCCcCHHHHHHHHH--HHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHccCCCCCC----CCCCCC--
Q 047286 422 NAFCFFIGSKLVEHGDATFGEVFKFLS--EFGCFWCLESTAVAPNADKAKGSAASIFEILESKPKIDW----SSKDGM-- 493 (632)
Q Consensus 422 ~~~~~~~g~~~v~~g~~s~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~----~~~~~~-- 493 (632)
...++..|++++..|++|.|.+++.-. .....++-.....+..+..+..+..|+.+++...|+... |.+.+.
T Consensus 257 Qs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~~m~LP~P~g~L~ 336 (580)
T COG4618 257 QSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAERMPLPAPQGALS 336 (580)
T ss_pred HHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCCCCCCCceee
Confidence 345677899999999999999987653 222334555666777888899999999999977654321 111100
Q ss_pred ------CCC-----ccc---ccEEEeeEEEEEecCCCChHHHHHhhhcCCChhh--------------------------
Q 047286 494 ------TPS-----TVR---GDIVFEHTVALVGENGNGKSTVISLAERFHNPEQ-------------------------- 533 (632)
Q Consensus 494 ------~~~-----~~~---g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~-------------------------- 533 (632)
.|| .++ -.+..++.+|||||||||||||+++|.|.+.|..
T Consensus 337 Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLP 416 (580)
T COG4618 337 VERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLP 416 (580)
T ss_pred EeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCc
Confidence 011 111 1344456899999999999999999999877632
Q ss_pred -------------------------hcHHHHHHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh-------
Q 047286 534 -------------------------VIYSWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY------- 581 (632)
Q Consensus 534 -------------------------~~~~~~~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~------- 581 (632)
+..+....+.||.|.+||+||||.|||+|..|||||||||++|||+..
T Consensus 417 QdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVL 496 (580)
T COG4618 417 QDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVL 496 (580)
T ss_pred ccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEe
Confidence 111122337899999999999999999999999999999999999533
Q ss_pred -----------------------------hccccchhhhhcCCEEEEEeCCeEeeecChHHHhcc
Q 047286 582 -----------------------------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKI 617 (632)
Q Consensus 582 -----------------------------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~ 617 (632)
++||||++.+..+|+|+||++|++...|+-+|.+++
T Consensus 497 DEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 497 DEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred cCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 899999999999999999999999999999998875
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-32 Score=305.22 Aligned_cols=254 Identities=24% Similarity=0.364 Sum_probs=211.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------------------------------------
Q 047286 3 ACLPAIVIAGGITATVVAKLSCRGQIAYAEAEMLLSTQLEP--------------------------------------- 43 (632)
Q Consensus 3 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~--------------------------------------- 43 (632)
+++|+++++...+.+++.+..++.++..+++++.+.|.+.|
T Consensus 145 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (569)
T PRK10789 145 LPMPVMAIMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFD 224 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777888888999999999999999999999943
Q ss_pred -----------------------CCcccHHHH-----------------HHHHHHHHHHHHHHHHHHHHhccCCCCCC--
Q 047286 44 -----------------------LEDMPLGQT-----------------SLNVNAFAAGQAAACKMFETIERIPKINP-- 81 (632)
Q Consensus 44 -----------------------~~~~~~~~~-----------------~~~~~~~~~~~~a~~ri~~~~~~~~~~~~-- 81 (632)
.+.+++|++ ...+..++++++|++|+.++++.+++...
T Consensus 225 ~~~~~~~~~~~~~~l~~g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~ 304 (569)
T PRK10789 225 PTIYIAIGMANLLAIGGGSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGS 304 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCC
Confidence 234455543 23456789999999999999976443110
Q ss_pred --------------------CC-----CcEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC---------------Cc
Q 047286 82 --------------------YD-----NRFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY---------------AP 121 (632)
Q Consensus 82 --------------------~~-----~~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~---------------~~ 121 (632)
.. +.+|+++++|++++|+||||||||||+++|.|+... ++
T Consensus 305 ~~~~~~~~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~ 384 (569)
T PRK10789 305 EPVPEGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQL 384 (569)
T ss_pred CCCCCCCCcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCH
Confidence 00 128999999999999999999999999999854211 12
Q ss_pred HHhhcceEEEcccCcccccccccccccccCCCCCCHHHHHHHHHHccchhhHhhCCccccccc-----------------
Q 047286 122 EAEQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV----------------- 184 (632)
Q Consensus 122 ~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~~~v----------------- 184 (632)
..+|++++|++|+|.+|.+++++ |+.++.++.+++++.++++.+++++++.++|.|++|.+
T Consensus 385 ~~~~~~i~~v~q~~~lf~~ti~~--Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~l 462 (569)
T PRK10789 385 DSWRSRLAVVSQTPFLFSDTVAN--NIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISI 462 (569)
T ss_pred HHHHhheEEEccCCeeccccHHH--HHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHH
Confidence 34678899999999999999987 78888777889999999999999999999999998876
Q ss_pred ---------------ccCCCCHHHHHHHHHHHHHHhCCceEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHhcCCCc
Q 047286 185 ---------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPEG 249 (632)
Q Consensus 185 ---------------~ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~~~~~ 249 (632)
+|++||+++++.+.+.|+++.+++|+|++||+++.++.||+|++|++|+++++|+++++.+. ++
T Consensus 463 ARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~ 541 (569)
T PRK10789 463 ARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQ-SG 541 (569)
T ss_pred HHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHc-CC
Confidence 28999999999999999998889999999999999999999999999999999999999876 67
Q ss_pred HHHHHHHHHh
Q 047286 250 AYSQLVRLQE 259 (632)
Q Consensus 250 ~~~~~~~~~~ 259 (632)
.|.++++.+.
T Consensus 542 ~y~~l~~~~~ 551 (569)
T PRK10789 542 WYRDMYRYQQ 551 (569)
T ss_pred hHHHHHHHhh
Confidence 8888886653
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-33 Score=307.32 Aligned_cols=159 Identities=17% Similarity=0.249 Sum_probs=122.0
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC---------------cHH-hhcceEEEcccCccccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA---------------PEA-EQEKIGLVSKEPIFLFCDFNEGQYI 148 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~---------------~~~-~r~~i~~v~Q~~~~~~~~~~~~~~i 148 (632)
.+||++++||+++|+||||||||||+++|.|+.... +.. .++.++|++|++.++. ..+..+|+
T Consensus 23 ~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~-~~tv~e~l 101 (510)
T PRK09700 23 SVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVID-ELTVLENL 101 (510)
T ss_pred eeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccC-CCcHHHHh
Confidence 499999999999999999999999999998653211 111 2356999999986544 23333355
Q ss_pred ccCCC------C---CC----HHHHHHHHHHccch----hhHhhCCcccccccc-----------------cCCCCHHHH
Q 047286 149 PYGKQ------N---AS----DEHIRPAVQLANAE----KSIDKLPLGLDTVVA-----------------TNAVDAQSE 194 (632)
Q Consensus 149 ~~~~~------~---~~----~~~~~~~~~~~~l~----~~i~~l~~g~~~~v~-----------------ts~LD~~~~ 194 (632)
.++.. . .+ .+++.++++.+++. ..+.+||+|++++++ |++||+.++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~ 181 (510)
T PRK09700 102 YIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEV 181 (510)
T ss_pred hhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Confidence 44321 0 01 23456677777764 457889999998883 999999999
Q ss_pred HHHHHHHHHHh-CCceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHh
Q 047286 195 RIVQAAMVKLV-TNQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELI 244 (632)
Q Consensus 195 ~~i~~~l~~~~-~~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~ 244 (632)
+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|+++..|+++++.
T Consensus 182 ~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 233 (510)
T PRK09700 182 DYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVS 233 (510)
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhCC
Confidence 99999999985 47899999999998865 9999999999999999887653
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-31 Score=296.98 Aligned_cols=254 Identities=17% Similarity=0.075 Sum_probs=172.4
Q ss_pred hhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-hH-------------
Q 047286 349 GAVGARLSTDASAVRSVVGDALGLIIQNIATIAAGLVIAFTA-WKLAFITLAVPSLTIAEGYLK-KK------------- 413 (632)
Q Consensus 349 G~l~srls~D~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~l~lv~l~~~~l~~~~~~~~-~~------------- 413 (632)
|++++|+++|++.+++.+.. +..++..++.+++++++++.. |.+++++++.+|+.+...++. ++
T Consensus 110 G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (555)
T TIGR01194 110 HNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLSVPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEED 188 (555)
T ss_pred chhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999998864 666677777777777777766 999988777666654332211 00
Q ss_pred ----------------HH--H----------HHH--------------H------HHHH-HHhhhhHHh---hcCCcCHH
Q 047286 414 ----------------KN--Y----------ERL--------------H------INAF-CFFIGSKLV---EHGDATFG 441 (632)
Q Consensus 414 ----------------~~--~----------~~~--------------~------~~~~-~~~~g~~~v---~~g~~s~~ 441 (632)
+. . .+. . ...+ .+.++..++ ..|.+++|
T Consensus 189 ~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~g 268 (555)
T TIGR01194 189 AFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFIAAENFGQLLFFLLIGCALFAAAMFASIDAA 268 (555)
T ss_pred HHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 00 0 000 0 0000 011111111 12688999
Q ss_pred HHHHHHHH--HHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcc---CCCCC-CCCCC------------CCC---------
Q 047286 442 EVFKFLSE--FGCFWCLESTAVAPNADKAKGSAASIFEILES---KPKID-WSSKD------------GMT--------- 494 (632)
Q Consensus 442 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~---~~~~~-~~~~~------------~~~--------- 494 (632)
++++++.. ....++..+......++++..+.+|+.++++. +++.. .+..+ ...
T Consensus 269 ~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~ 348 (555)
T TIGR01194 269 AISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPK 348 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccCCCCceEEEEEEEEEeC
Confidence 98888743 33345777788888999999999999999753 11110 00000 000
Q ss_pred ---------CCcccccEEEeeEEEEEecCCCChHHHHHhhhcCCChhh------------hcH-----------------
Q 047286 495 ---------PSTVRGDIVFEHTVALVGENGNGKSTVISLAERFHNPEQ------------VIY----------------- 536 (632)
Q Consensus 495 ---------~~~~~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~------------~~~----------------- 536 (632)
..+++-+|+-++++|||||||||||||+++|.|+|+|++ +..
T Consensus 349 ~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf 428 (555)
T TIGR01194 349 APEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLF 428 (555)
T ss_pred CCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhh
Confidence 000111233344899999999999999999999999843 000
Q ss_pred -------------------HHHHHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh----------------
Q 047286 537 -------------------SWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY---------------- 581 (632)
Q Consensus 537 -------------------~~~~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~---------------- 581 (632)
.....++++++..+|+||||. .+||||||||||||||+++
T Consensus 429 ~~ti~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~-----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~ 503 (555)
T TIGR01194 429 DDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTT-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDP 503 (555)
T ss_pred hhhhhcccccchhHHHHHHHHHHcCCchhhcccccccCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCH
Confidence 001125678999999999994 7899999999999999655
Q ss_pred ---------------------hccccchhhhhcCCEEEEEeCCeEeee
Q 047286 582 ---------------------CGCGSPPYHYKNADITSVVKNGVIAEK 608 (632)
Q Consensus 582 ---------------------~~iahrl~~~~~aD~I~vl~~G~ive~ 608 (632)
+++|||+++++.||+|+||++|+|+|.
T Consensus 504 ~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 504 AFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 788999999999999999999999984
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=302.40 Aligned_cols=153 Identities=17% Similarity=0.255 Sum_probs=118.7
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC---------------c-HHhhcceEEEcccCccccc-ccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA---------------P-EAEQEKIGLVSKEPIFLFC-DFNEGQY 147 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~---------------~-~~~r~~i~~v~Q~~~~~~~-~~~~~~~ 147 (632)
.+||++++|++++|+||||||||||+++|.|+.... + ..+++.++|++|++.++.. ++.+ |
T Consensus 22 ~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~--~ 99 (501)
T PRK11288 22 DISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAE--N 99 (501)
T ss_pred eeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCHHH--H
Confidence 399999999999999999999999999998653211 1 1235679999999865542 4444 5
Q ss_pred cccCCC----C-CC----HHHHHHHHHHccch----hhHhhCCcccccccc-----------------cCCCCHHHHHHH
Q 047286 148 IPYGKQ----N-AS----DEHIRPAVQLANAE----KSIDKLPLGLDTVVA-----------------TNAVDAQSERIV 197 (632)
Q Consensus 148 i~~~~~----~-~~----~~~~~~~~~~~~l~----~~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i 197 (632)
+.++.. . .. .+++.++++.+++. ..+.+||+|++++++ |++||+.+++.+
T Consensus 100 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l 179 (501)
T PRK11288 100 LYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQL 179 (501)
T ss_pred HHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHH
Confidence 554321 1 11 24566778877764 457889999998883 999999999999
Q ss_pred HHHHHHHh-CCceEEEEecCchHHhh-cCeEEEEeCCeEEEecC
Q 047286 198 QAAMVKLV-TNQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGT 239 (632)
Q Consensus 198 ~~~l~~~~-~~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~ 239 (632)
.+.|+++. +++|+|++||+++.+.. ||+|++|++|+++..++
T Consensus 180 ~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~ 223 (501)
T PRK11288 180 FRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFD 223 (501)
T ss_pred HHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecC
Confidence 99999885 47899999999998865 99999999999986553
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-32 Score=310.63 Aligned_cols=252 Identities=27% Similarity=0.362 Sum_probs=213.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------------------------------------
Q 047286 3 ACLPAIVIAGGITATVVAKLSCRGQIAYAEAEMLLSTQLEP--------------------------------------- 43 (632)
Q Consensus 3 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~--------------------------------------- 43 (632)
+++|+++++..++.+..++..++.+++.++.++.+.|.+.|
T Consensus 286 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (694)
T TIGR01846 286 GSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAG 365 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777777788888999999999999999999999943
Q ss_pred -----------------------CCcccHHHH-----------------HHHHHHHHHHHHHHHHHHHHhccCCCCCCC-
Q 047286 44 -----------------------LEDMPLGQT-----------------SLNVNAFAAGQAAACKMFETIERIPKINPY- 82 (632)
Q Consensus 44 -----------------------~~~~~~~~~-----------------~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~- 82 (632)
.+.+++|++ ...+..+++++.+++|+.++++.+++.+..
T Consensus 366 ~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~ 445 (694)
T TIGR01846 366 QAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSAG 445 (694)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCCC
Confidence 244566653 234677899999999999999765432110
Q ss_pred ----------------------C-----CcEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCC---------------CC
Q 047286 83 ----------------------D-----NRFLQHVPSGTTVALVGQSGSGKSTVINLVESFRF---------------YA 120 (632)
Q Consensus 83 ----------------------~-----~~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~---------------~~ 120 (632)
+ +.+||++++|+.++|+|+||||||||+++|.|+.. ++
T Consensus 446 ~~~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~ 525 (694)
T TIGR01846 446 LAALPELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIAD 525 (694)
T ss_pred CCCCCCCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCC
Confidence 0 01899999999999999999999999999985421 12
Q ss_pred cHHhhcceEEEcccCcccccccccccccccCCCCCCHHHHHHHHHHccchhhHhhCCccccccc----------------
Q 047286 121 PEAEQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV---------------- 184 (632)
Q Consensus 121 ~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~~~v---------------- 184 (632)
...+|++++||+|++.+|.+++.+ |+.++.++.+++++.++++.+++++++.++|.|++|.+
T Consensus 526 ~~~~r~~i~~v~q~~~lf~~ti~e--Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~ 603 (694)
T TIGR01846 526 PAWLRRQMGVVLQENVLFSRSIRD--NIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIA 603 (694)
T ss_pred HHHHHHhCeEEccCCeehhhhHHH--HHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHH
Confidence 335788999999999999999988 78888777889999999999999999999999999887
Q ss_pred ----------------ccCCCCHHHHHHHHHHHHHHhCCceEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHhcCCC
Q 047286 185 ----------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPE 248 (632)
Q Consensus 185 ----------------~ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~~~~ 248 (632)
+|++||+.+++.+.+.|+++.+++|+|++||+++.++.||+|++|++|++++.|+|+++++. +
T Consensus 604 lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~-~ 682 (694)
T TIGR01846 604 IARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLAL-Q 682 (694)
T ss_pred HHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHc-C
Confidence 39999999999999999998888999999999999999999999999999999999999876 6
Q ss_pred cHHHHHHHH
Q 047286 249 GAYSQLVRL 257 (632)
Q Consensus 249 ~~~~~~~~~ 257 (632)
+.|.++++.
T Consensus 683 ~~y~~l~~~ 691 (694)
T TIGR01846 683 GLYARLWQQ 691 (694)
T ss_pred ChHHHHHHh
Confidence 788888764
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-32 Score=300.44 Aligned_cols=157 Identities=16% Similarity=0.216 Sum_probs=121.3
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC---------------c-HHhhcceEEEcccCcccc-cccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA---------------P-EAEQEKIGLVSKEPIFLF-CDFNEGQY 147 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~---------------~-~~~r~~i~~v~Q~~~~~~-~~~~~~~~ 147 (632)
.+||++++||+++|+||||||||||+++|.|+.... + ...++.++|++|++.++. .++.+ |
T Consensus 16 ~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~--~ 93 (491)
T PRK10982 16 NVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMD--N 93 (491)
T ss_pred eeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHHH--H
Confidence 399999999999999999999999999998653211 0 113567999999986543 24443 5
Q ss_pred cccCCC---C--CC----HHHHHHHHHHccc----hhhHhhCCcccccccc-----------------cCCCCHHHHHHH
Q 047286 148 IPYGKQ---N--AS----DEHIRPAVQLANA----EKSIDKLPLGLDTVVA-----------------TNAVDAQSERIV 197 (632)
Q Consensus 148 i~~~~~---~--~~----~~~~~~~~~~~~l----~~~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i 197 (632)
+.++.. . .+ .+++.++++..++ +..+.+||+|++++++ |++||+.+++.+
T Consensus 94 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l 173 (491)
T PRK10982 94 MWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHL 173 (491)
T ss_pred hhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHH
Confidence 554321 1 11 2345667777765 3457889999998883 999999999999
Q ss_pred HHHHHHHh-CCceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHH
Q 047286 198 QAAMVKLV-TNQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDEL 243 (632)
Q Consensus 198 ~~~l~~~~-~~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el 243 (632)
.+.|+++. ++.|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 174 ~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 174 FTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred HHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhC
Confidence 99999985 47899999999998865 999999999999999887664
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-31 Score=303.68 Aligned_cols=253 Identities=27% Similarity=0.392 Sum_probs=209.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------------------------------------
Q 047286 3 ACLPAIVIAGGITATVVAKLSCRGQIAYAEAEMLLSTQLEP--------------------------------------- 43 (632)
Q Consensus 3 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~--------------------------------------- 43 (632)
+++|+++++..++.++.++..++.++..++.++.+.|.+.|
T Consensus 164 ~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (588)
T PRK13657 164 VLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALAS 243 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566667777788888888888899999999999999954
Q ss_pred -----------------------CCcccHHHH-----------------HHHHHHHHHHHHHHHHHHHHhccCCCCC---
Q 047286 44 -----------------------LEDMPLGQT-----------------SLNVNAFAAGQAAACKMFETIERIPKIN--- 80 (632)
Q Consensus 44 -----------------------~~~~~~~~~-----------------~~~~~~~~~~~~a~~ri~~~~~~~~~~~--- 80 (632)
.|.+++|.+ ...+..+..++.+++|+.++++.+++.+
T Consensus 244 ~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~ 323 (588)
T PRK13657 244 VLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPP 323 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCC
Confidence 244455543 2345678889999999999987633210
Q ss_pred C----C----------------C-----CcEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC---------------C
Q 047286 81 P----Y----------------D-----NRFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY---------------A 120 (632)
Q Consensus 81 ~----~----------------~-----~~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~---------------~ 120 (632)
. . + +++|+++++||+++|+|+||||||||+++|.|+-.+ +
T Consensus 324 ~~~~~~~~~~~I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~ 403 (588)
T PRK13657 324 GAIDLGRVKGAVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVT 403 (588)
T ss_pred CCCCcCCCCCeEEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCC
Confidence 0 0 0 018999999999999999999999999999844211 1
Q ss_pred cHHhhcceEEEcccCcccccccccccccccCCCCCCHHHHHHHHHHccchhhHhhCCccccccc----------------
Q 047286 121 PEAEQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV---------------- 184 (632)
Q Consensus 121 ~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~~~v---------------- 184 (632)
...+|++++||||+|.+|.+|+++ |+.++.++.+++++.++++.+++++++.++|.|++|.+
T Consensus 404 ~~~~r~~i~~v~Q~~~lf~~Ti~~--Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRia 481 (588)
T PRK13657 404 RASLRRNIAVVFQDAGLFNRSIED--NIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLA 481 (588)
T ss_pred HHHHHhheEEEecCcccccccHHH--HHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHH
Confidence 234688999999999999999988 79988777889999999999999999999999999876
Q ss_pred ----------------ccCCCCHHHHHHHHHHHHHHhCCceEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHhcCCC
Q 047286 185 ----------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPE 248 (632)
Q Consensus 185 ----------------~ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~~~~ 248 (632)
+||+||+.+++.+.+.|++..+++|+|+|||+++.++.||+|++|++|++++.|+|++++.. +
T Consensus 482 lARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~-~ 560 (588)
T PRK13657 482 IARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVAR-G 560 (588)
T ss_pred HHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHC-C
Confidence 39999999999999999998788999999999999999999999999999999999999876 6
Q ss_pred cHHHHHHHHH
Q 047286 249 GAYSQLVRLQ 258 (632)
Q Consensus 249 ~~~~~~~~~~ 258 (632)
+.|.+++..+
T Consensus 561 ~~y~~l~~~~ 570 (588)
T PRK13657 561 GRFAALLRAQ 570 (588)
T ss_pred ChHHHHHHHh
Confidence 7788877654
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=300.46 Aligned_cols=156 Identities=21% Similarity=0.272 Sum_probs=118.2
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHH----hhcceEEEcccCccccc-ccccccccccCCC------
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEA----EQEKIGLVSKEPIFLFC-DFNEGQYIPYGKQ------ 153 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~----~r~~i~~v~Q~~~~~~~-~~~~~~~i~~~~~------ 153 (632)
.+||+|++|++++|+||||||||||+++|.|........ .+..+|||+|++.++.. ++.+ |+.++..
T Consensus 25 ~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e--~l~~~~~~~~~~~ 102 (556)
T PRK11819 25 DISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLDPEKTVRE--NVEEGVAEVKAAL 102 (556)
T ss_pred CceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCcHHH--HHHHhhHHHHHHH
Confidence 499999999999999999999999999999653322111 13569999999876542 3333 4443210
Q ss_pred ----------C-C-------------------------CHHHHHHHHHHccc---hhhHhhCCccccccc----------
Q 047286 154 ----------N-A-------------------------SDEHIRPAVQLANA---EKSIDKLPLGLDTVV---------- 184 (632)
Q Consensus 154 ----------~-~-------------------------~~~~~~~~~~~~~l---~~~i~~l~~g~~~~v---------- 184 (632)
. . ..+++.++++.+++ +..+.+||+|+++++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~la~al~~~p 182 (556)
T PRK11819 103 DRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGGERRRVALCRLLLEKP 182 (556)
T ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccCchhhcCHHHHHHHHHHHHHhCCC
Confidence 0 0 02344556666655 456788999999888
Q ss_pred -------ccCCCCHHHHHHHHHHHHHHhCCceEEEEecCchHHhh-cCeEEEEeCCeEE-EecChhHHh
Q 047286 185 -------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRN-ADCIIMVSKGKIV-EKGTHDELI 244 (632)
Q Consensus 185 -------~ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~-aD~i~vl~~G~i~-~~g~~~el~ 244 (632)
+|++||+.+.+.+.+.|+++. .|+|++||+++.+.. ||+|++|++|+++ ..|+++++.
T Consensus 183 ~vlLLDEPt~~LD~~~~~~l~~~L~~~~--~tviiisHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~ 249 (556)
T PRK11819 183 DMLLLDEPTNHLDAESVAWLEQFLHDYP--GTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYSSWL 249 (556)
T ss_pred CEEEEcCCCCcCChHHHHHHHHHHHhCC--CeEEEEeCCHHHHHhhcCeEEEEeCCEEEEecCCHHHHH
Confidence 399999999999999999873 599999999998875 9999999999986 678777664
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=301.90 Aligned_cols=252 Identities=33% Similarity=0.495 Sum_probs=212.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------------------------------------
Q 047286 2 AACLPAIVIAGGITATVVAKLSCRGQIAYAEAEMLLSTQLEP-------------------------------------- 43 (632)
Q Consensus 2 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-------------------------------------- 43 (632)
++++|+++++..++.++.++..++.++..++.++.+.|.+.|
T Consensus 161 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (571)
T TIGR02203 161 VVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSIS 240 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677778888899999999999999999999999999954
Q ss_pred ------------------------CCcccHHHH-----------------HHHHHHHHHHHHHHHHHHHHhccCCCCCC-
Q 047286 44 ------------------------LEDMPLGQT-----------------SLNVNAFAAGQAAACKMFETIERIPKINP- 81 (632)
Q Consensus 44 ------------------------~~~~~~~~~-----------------~~~~~~~~~~~~a~~ri~~~~~~~~~~~~- 81 (632)
.+.+++|.+ ...+..+++++++.+|+.++++.+++.+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~ 320 (571)
T TIGR02203 241 SPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTG 320 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Confidence 233444442 34567889999999999999976443110
Q ss_pred ---------------------C-C----CcEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC---------------C
Q 047286 82 ---------------------Y-D----NRFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY---------------A 120 (632)
Q Consensus 82 ---------------------~-~----~~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~---------------~ 120 (632)
. . +.+||++++||+++|+|+||||||||+++|.|+-.+ +
T Consensus 321 ~~~~~~~~~~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~ 400 (571)
T TIGR02203 321 TRAIERARGDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYT 400 (571)
T ss_pred CCCCCCCCCeEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcC
Confidence 0 0 128999999999999999999999999999854211 2
Q ss_pred cHHhhcceEEEcccCcccccccccccccccCCC-CCCHHHHHHHHHHccchhhHhhCCccccccc---------------
Q 047286 121 PEAEQEKIGLVSKEPIFLFCDFNEGQYIPYGKQ-NASDEHIRPAVQLANAEKSIDKLPLGLDTVV--------------- 184 (632)
Q Consensus 121 ~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~~~v--------------- 184 (632)
...++++++|+||+|++|.+++++ |+.++.+ +.+++++.++++.+++++++.++|.|++|.+
T Consensus 401 ~~~~~~~i~~v~Q~~~lf~~Ti~~--Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRi 478 (571)
T TIGR02203 401 LASLRRQVALVSQDVVLFNDTIAN--NIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRL 478 (571)
T ss_pred HHHHHhhceEEccCcccccccHHH--HHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHH
Confidence 234688899999999999999998 7888875 6889999999999999999999999999887
Q ss_pred -----------------ccCCCCHHHHHHHHHHHHHHhCCceEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHhcCC
Q 047286 185 -----------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDP 247 (632)
Q Consensus 185 -----------------~ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~~~ 247 (632)
+||+||+++++.+.+.|++..+++|+|+|||++..+..||+|++|++|++++.|+++++.+.
T Consensus 479 aLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~~- 557 (571)
T TIGR02203 479 AIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLAR- 557 (571)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHHc-
Confidence 39999999999999999998889999999999999999999999999999999999999876
Q ss_pred CcHHHHHHH
Q 047286 248 EGAYSQLVR 256 (632)
Q Consensus 248 ~~~~~~~~~ 256 (632)
++.|.+++.
T Consensus 558 ~~~~~~~~~ 566 (571)
T TIGR02203 558 NGLYAQLHN 566 (571)
T ss_pred CCHHHHHHH
Confidence 567777654
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-30 Score=316.33 Aligned_cols=159 Identities=15% Similarity=0.182 Sum_probs=119.4
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCC--CC------------c----HHhhcceEEEcccCccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRF--YA------------P----EAEQEKIGLVSKEPIFLFCDFNEGQ 146 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~--~~------------~----~~~r~~i~~v~Q~~~~~~~~~~~~~ 146 (632)
++|+++++||+++|+||||||||||+|+|.|... .. . ...|+.++|++|++.++. .++..+
T Consensus 79 ~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~-~lTV~E 157 (1394)
T TIGR00956 79 PMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFP-HLTVGE 157 (1394)
T ss_pred CCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCC-CCCHHH
Confidence 4999999999999999999999999999987531 01 0 113456999999976543 334333
Q ss_pred ccccCCC---------CCCHH----H-HHHHHHHccchhh---------HhhCCcccccccc-----------------c
Q 047286 147 YIPYGKQ---------NASDE----H-IRPAVQLANAEKS---------IDKLPLGLDTVVA-----------------T 186 (632)
Q Consensus 147 ~i~~~~~---------~~~~~----~-~~~~~~~~~l~~~---------i~~l~~g~~~~v~-----------------t 186 (632)
++.+... ..+.+ + .+++++..++.+. +..+++|+++++. |
T Consensus 158 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPT 237 (1394)
T TIGR00956 158 TLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNAT 237 (1394)
T ss_pred HHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCC
Confidence 5554210 11222 2 2346677777542 4569999999883 9
Q ss_pred CCCCHHHHHHHHHHHHHHhC--CceEEEEecCc-hHH-hhcCeEEEEeCCeEEEecChhHHh
Q 047286 187 NAVDAQSERIVQAAMVKLVT--NQTVVIVANCL-ITI-RNADCIIMVSKGKIVEKGTHDELI 244 (632)
Q Consensus 187 s~LD~~~~~~i~~~l~~~~~--~~tviiitH~~-~~~-~~aD~i~vl~~G~i~~~g~~~el~ 244 (632)
+|||+.++..+.+.|+++.+ ++|+|+++|++ +.+ +.+|+|++|++|+++..|+.+++.
T Consensus 238 sgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~ 299 (1394)
T TIGR00956 238 RGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAK 299 (1394)
T ss_pred CCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHH
Confidence 99999999999999999853 78999999997 444 459999999999999999998873
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-32 Score=282.11 Aligned_cols=170 Identities=33% Similarity=0.534 Sum_probs=156.3
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCC--------------CCCcHHhhcceEEEcccCcccccccccccccccC
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFR--------------FYAPEAEQEKIGLVSKEPIFLFCDFNEGQYIPYG 151 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~--------------~~~~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~ 151 (632)
+||+|++||.+||+|+|||||||++|+|..+- .+.++.+|+.||||||+..+|+.|+.. ||.+|
T Consensus 371 vsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~--NI~YG 448 (591)
T KOG0057|consen 371 VSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILY--NIKYG 448 (591)
T ss_pred eeEEecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHH--HhhcC
Confidence 99999999999999999999999999997321 123456899999999999999999988 89999
Q ss_pred CCCCCHHHHHHHHHHccchhhHhhCCccccccc--------------------------------ccCCCCHHHHHHHHH
Q 047286 152 KQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV--------------------------------ATNAVDAQSERIVQA 199 (632)
Q Consensus 152 ~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~~~v--------------------------------~ts~LD~~~~~~i~~ 199 (632)
+...+++++.++++.+++++.+.++|+|++|.+ +||+||.++|+.+.+
T Consensus 449 n~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~ 528 (591)
T KOG0057|consen 449 NPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILD 528 (591)
T ss_pred CCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHH
Confidence 999999999999999999999999999999888 399999999999999
Q ss_pred HHHHHhCCceEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHhcCCCcHHHHHHHHH
Q 047286 200 AMVKLVTNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQ 258 (632)
Q Consensus 200 ~l~~~~~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~~~ 258 (632)
.+.+...++|+|+|.|++..++.||+|+++++|++.+.|+|+|++. +.+.|.++|..+
T Consensus 529 ~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~-~s~~~~~~w~~~ 586 (591)
T KOG0057|consen 529 MIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLA-PSELYADLWTTQ 586 (591)
T ss_pred HHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhh-hhhHHHHHhccc
Confidence 9999878999999999999999999999999999999999999998 578888888654
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-31 Score=295.85 Aligned_cols=157 Identities=16% Similarity=0.262 Sum_probs=119.6
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC--Cc---------------H-HhhcceEEEcccCccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY--AP---------------E-AEQEKIGLVSKEPIFLFCDFNEGQ 146 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~--~~---------------~-~~r~~i~~v~Q~~~~~~~~~~~~~ 146 (632)
.+||++++|++++|+||||||||||+++|.|+... .. . ..++.++|++|++.++. .++..+
T Consensus 19 ~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~-~~tv~~ 97 (500)
T TIGR02633 19 GIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVP-ELSVAE 97 (500)
T ss_pred ceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCC-CCcHHH
Confidence 39999999999999999999999999999876432 00 0 12456999999986543 233333
Q ss_pred ccccCCC------CCC----HHHHHHHHHHccch-----hhHhhCCccccccc-----------------ccCCCCHHHH
Q 047286 147 YIPYGKQ------NAS----DEHIRPAVQLANAE-----KSIDKLPLGLDTVV-----------------ATNAVDAQSE 194 (632)
Q Consensus 147 ~i~~~~~------~~~----~~~~~~~~~~~~l~-----~~i~~l~~g~~~~v-----------------~ts~LD~~~~ 194 (632)
|+.++.. ... .+++.++++..++. ..+.+||+|+++++ +|++||+.++
T Consensus 98 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~ 177 (500)
T TIGR02633 98 NIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKET 177 (500)
T ss_pred HHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Confidence 5544321 011 23466777777764 23778999999888 3999999999
Q ss_pred HHHHHHHHHHh-CCceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhH
Q 047286 195 RIVQAAMVKLV-TNQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDE 242 (632)
Q Consensus 195 ~~i~~~l~~~~-~~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~e 242 (632)
+.+.+.|+++. ++.|+|++||+++.+.. ||+|++|++|+++..|+.++
T Consensus 178 ~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (500)
T TIGR02633 178 EILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMST 227 (500)
T ss_pred HHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCccc
Confidence 99999999885 46899999999998865 99999999999998776543
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-31 Score=279.80 Aligned_cols=197 Identities=28% Similarity=0.461 Sum_probs=173.5
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCCC-C--------------------------CcEEEEeeCCCEEEEEcCCCchHHHH
Q 047286 57 NAFAAGQAAACKMFETIERIPKINPY-D--------------------------NRFLQHVPSGTTVALVGQSGSGKSTV 109 (632)
Q Consensus 57 ~~~~~~~~a~~ri~~~~~~~~~~~~~-~--------------------------~~~~~~i~~Ge~~~ivG~sGsGKSTL 109 (632)
....+...|+.|+.++++.+++.... . +.+||++++||.+||+|+||||||||
T Consensus 301 ~~lgq~~~Sa~Rl~~i~~q~~e~~~~~~~~~~~~~~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTl 380 (573)
T COG4987 301 QHLGQVIASARRLNDILDQKPEVTFPDEQTATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTL 380 (573)
T ss_pred HHhhHHHHHHHHHhhhccCCcccCCCccccCCccceeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHH
Confidence 45667889999999999988764321 0 01999999999999999999999999
Q ss_pred HHHHHhC---------------CCCCcHHhhcceEEEcccCcccccccccccccccCCCCCCHHHHHHHHHHccchhhHh
Q 047286 110 INLVESF---------------RFYAPEAEQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSID 174 (632)
Q Consensus 110 l~ll~~~---------------~~~~~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~i~ 174 (632)
++++.+. ..+++..+|+.+++++|.+.+|.+|+++ |+..+++++++|++.++++.+++++.+.
T Consensus 381 lqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~--NL~lA~~~AsDEel~~aL~qvgL~~l~~ 458 (573)
T COG4987 381 LQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRD--NLRLANPDASDEELWAALQQVGLEKLLE 458 (573)
T ss_pred HHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHH--HHhhcCCCCCHHHHHHHHHHcCHHHHHH
Confidence 9999842 1223344788999999999999999998 7999999999999999999999999999
Q ss_pred hCCccccccc--------------------------------ccCCCCHHHHHHHHHHHHHHhCCceEEEEecCchHHhh
Q 047286 175 KLPLGLDTVV--------------------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRN 222 (632)
Q Consensus 175 ~l~~g~~~~v--------------------------------~ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~ 222 (632)
+.|.|++|.+ +|.|||+.|++++++.+.+..++||+++|||++..++.
T Consensus 459 ~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~ 538 (573)
T COG4987 459 SAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLER 538 (573)
T ss_pred hChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhh
Confidence 9999998877 28999999999999999999999999999999999999
Q ss_pred cCeEEEEeCCeEEEecChhHHhcCCCcHHHHHHH
Q 047286 223 ADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVR 256 (632)
Q Consensus 223 aD~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~ 256 (632)
||+|++|++|+++++|+|.+++.+ ++.|.++++
T Consensus 539 ~drIivl~~Gkiie~G~~~~Ll~~-~g~~~~l~q 571 (573)
T COG4987 539 MDRIIVLDNGKIIEEGTHAELLAN-NGRYKRLYQ 571 (573)
T ss_pred cCEEEEEECCeeeecCCHHhhhcc-ccHHHHHhc
Confidence 999999999999999999999985 677877754
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.6e-32 Score=297.64 Aligned_cols=159 Identities=16% Similarity=0.120 Sum_probs=120.7
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC---------------cHHhhcceEEEcccCccc--cc-----cc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA---------------PEAEQEKIGLVSKEPIFL--FC-----DF 142 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~---------------~~~~r~~i~~v~Q~~~~~--~~-----~~ 142 (632)
.+||++++|++++|+||||||||||+++|.|+...+ +...++.++|++|++... .. ..
T Consensus 21 ~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~ 100 (490)
T PRK10938 21 LPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGR 100 (490)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceeccCcchhhcccchhhccc
Confidence 399999999999999999999999999998652110 112345699999986431 11 11
Q ss_pred ccccccccCCCCCCHHHHHHHHHHccchh----hHhhCCcccccccc-----------------cCCCCHHHHHHHHHHH
Q 047286 143 NEGQYIPYGKQNASDEHIRPAVQLANAEK----SIDKLPLGLDTVVA-----------------TNAVDAQSERIVQAAM 201 (632)
Q Consensus 143 ~~~~~i~~~~~~~~~~~~~~~~~~~~l~~----~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~~l 201 (632)
...+++.++. ...+++.++++..++.+ .+.+||+|++++++ |++||+.+++.+.+.|
T Consensus 101 ~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l 178 (490)
T PRK10938 101 TTAEIIQDEV--KDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELL 178 (490)
T ss_pred cHHHhcccch--hHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 1112332221 12456777888887753 46789999998883 9999999999999999
Q ss_pred HHHhC-CceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhc
Q 047286 202 VKLVT-NQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIE 245 (632)
Q Consensus 202 ~~~~~-~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~ 245 (632)
+++.+ +.|+|++||+++.+.. ||++++|++|+++..|+++++..
T Consensus 179 ~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 224 (490)
T PRK10938 179 ASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQ 224 (490)
T ss_pred HHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99854 6899999999998865 99999999999999998887753
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.7e-31 Score=296.01 Aligned_cols=157 Identities=16% Similarity=0.168 Sum_probs=112.0
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHHh----hcceEEEcccCccccccccc--------------c-
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAE----QEKIGLVSKEPIFLFCDFNE--------------G- 145 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~~----r~~i~~v~Q~~~~~~~~~~~--------------~- 145 (632)
.+||+|++|++++|+||||||||||+++|+|....+...+ ...++|++|++..+..+... .
T Consensus 19 ~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~ 98 (638)
T PRK10636 19 NATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQPALEYVIDGDREYRQLEAQL 98 (638)
T ss_pred CcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCHHHHHHHhhHHHHHHHHHH
Confidence 3999999999999999999999999999996533222211 12478999864322111100 0
Q ss_pred -----ccc--ccC-------C--CCCCHHHHHHHHHHccch-----hhHhhCCccccccc-----------------ccC
Q 047286 146 -----QYI--PYG-------K--QNASDEHIRPAVQLANAE-----KSIDKLPLGLDTVV-----------------ATN 187 (632)
Q Consensus 146 -----~~i--~~~-------~--~~~~~~~~~~~~~~~~l~-----~~i~~l~~g~~~~v-----------------~ts 187 (632)
.+. .+. . ......++.++++..++. ..+..||+|+++++ +|+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn 178 (638)
T PRK10636 99 HDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTN 178 (638)
T ss_pred HHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCC
Confidence 000 000 0 001234567778877763 35788999999888 399
Q ss_pred CCCHHHHHHHHHHHHHHhCCceEEEEecCchHHhh-cCeEEEEeCCeEEE-ecChhHH
Q 047286 188 AVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRN-ADCIIMVSKGKIVE-KGTHDEL 243 (632)
Q Consensus 188 ~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~-aD~i~vl~~G~i~~-~g~~~el 243 (632)
+||+.+...+.+.|+++ +.|+|+|||+...+.. ||+|++|++|++.. .|+++..
T Consensus 179 ~LD~~~~~~L~~~L~~~--~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~~ 234 (638)
T PRK10636 179 HLDLDAVIWLEKWLKSY--QGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGNYSSF 234 (638)
T ss_pred cCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEecCCHHHH
Confidence 99999999999998876 4699999999998865 99999999999964 5666554
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=99.98 E-value=1e-30 Score=292.60 Aligned_cols=157 Identities=21% Similarity=0.288 Sum_probs=116.3
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHH----hhcceEEEcccCccccc-ccccccccccCCC------
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEA----EQEKIGLVSKEPIFLFC-DFNEGQYIPYGKQ------ 153 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~----~r~~i~~v~Q~~~~~~~-~~~~~~~i~~~~~------ 153 (632)
.+||+|++|++++|+||||||||||+++|+|........ .+..++|++|++.++.. ++.+ |+.++..
T Consensus 23 ~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e--~i~~~~~~~~~~~ 100 (552)
T TIGR03719 23 DISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDPTKTVRE--NVEEGVAEIKDAL 100 (552)
T ss_pred CceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCCCCcHHH--HHHHhhHHHHHHH
Confidence 499999999999999999999999999999653322111 13569999999976532 4443 5544210
Q ss_pred -----------CCCH-------------------------HHHHHHHHHccc---hhhHhhCCccccccc----------
Q 047286 154 -----------NASD-------------------------EHIRPAVQLANA---EKSIDKLPLGLDTVV---------- 184 (632)
Q Consensus 154 -----------~~~~-------------------------~~~~~~~~~~~l---~~~i~~l~~g~~~~v---------- 184 (632)
.... +++.++++..++ +..+..||+|+++++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkqrv~la~al~~~p 180 (552)
T TIGR03719 101 DRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKP 180 (552)
T ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCchhhcCHHHHHHHHHHHHHhcCC
Confidence 0001 122334444443 446788999999888
Q ss_pred -------ccCCCCHHHHHHHHHHHHHHhCCceEEEEecCchHHhh-cCeEEEEeCCeEE-EecChhHHhc
Q 047286 185 -------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRN-ADCIIMVSKGKIV-EKGTHDELIE 245 (632)
Q Consensus 185 -------~ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~-aD~i~vl~~G~i~-~~g~~~el~~ 245 (632)
+|++||+.+++.+.+.|+++ +.|+|+|||+++.+.. ||++++|++|+++ ..|+++++.+
T Consensus 181 ~lLLLDEPt~~LD~~~~~~l~~~L~~~--~~tvIiisHd~~~~~~~~d~v~~l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 181 DMLLLDEPTNHLDAESVAWLEQHLQEY--PGTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred CEEEEcCCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcCeEEEEECCEEEEecCCHHHHHH
Confidence 39999999999999999886 3599999999998876 9999999999976 6788877653
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-30 Score=293.88 Aligned_cols=254 Identities=26% Similarity=0.371 Sum_probs=209.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------------------------------------
Q 047286 2 AACLPAIVIAGGITATVVAKLSCRGQIAYAEAEMLLSTQLEP-------------------------------------- 43 (632)
Q Consensus 2 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-------------------------------------- 43 (632)
++++|+++++..++.+++++..++.++..++.++.+.|.+.|
T Consensus 163 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (585)
T TIGR01192 163 MVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALA 242 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777778888888888888899999999999999954
Q ss_pred ------------------------CCcccHHHH-----------------HHHHHHHHHHHHHHHHHHHHhccCCCCC--
Q 047286 44 ------------------------LEDMPLGQT-----------------SLNVNAFAAGQAAACKMFETIERIPKIN-- 80 (632)
Q Consensus 44 ------------------------~~~~~~~~~-----------------~~~~~~~~~~~~a~~ri~~~~~~~~~~~-- 80 (632)
.+.+++|++ ...+..++.++.+++|+.++++.+++..
T Consensus 243 ~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~ 322 (585)
T TIGR01192 243 SGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEP 322 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCC
Confidence 233455542 2345677899999999999997643210
Q ss_pred ------C--------------CC------CcEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCC---------------C
Q 047286 81 ------P--------------YD------NRFLQHVPSGTTVALVGQSGSGKSTVINLVESFRF---------------Y 119 (632)
Q Consensus 81 ------~--------------~~------~~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~---------------~ 119 (632)
+ ++ +.+||++++|++++|+||||||||||+++|.|... .
T Consensus 323 ~~~~~~~~~~~~i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~ 402 (585)
T TIGR01192 323 ADAPELPNVKGAVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTV 402 (585)
T ss_pred ccCCCCCCCCCeEEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhC
Confidence 0 00 01899999999999999999999999999985421 1
Q ss_pred CcHHhhcceEEEcccCcccccccccccccccCCCCCCHHHHHHHHHHccchhhHhhCCccccccc---------------
Q 047286 120 APEAEQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV--------------- 184 (632)
Q Consensus 120 ~~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~~~v--------------- 184 (632)
++..+|+.++||+|+|.+|.+++.+ |+.++.++.+++++.++++.+++++++.++|+|+++.+
T Consensus 403 ~~~~~~~~i~~v~q~~~lf~~ti~~--Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl 480 (585)
T TIGR01192 403 TRESLRKSIATVFQDAGLFNRSIRE--NIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRL 480 (585)
T ss_pred CHHHHHhheEEEccCCccCcccHHH--HHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHH
Confidence 2234678999999999999999987 78888777788999999999999999999999888766
Q ss_pred -----------------ccCCCCHHHHHHHHHHHHHHhCCceEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHhcCC
Q 047286 185 -----------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDP 247 (632)
Q Consensus 185 -----------------~ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~~~ 247 (632)
+|++||+.+++.+.+.|.++.+++|+|++||+++.++.||+|++|++|++++.|+++++.++
T Consensus 481 ~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~- 559 (585)
T TIGR01192 481 AIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQK- 559 (585)
T ss_pred HHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHC-
Confidence 39999999999999999998889999999999999999999999999999999999999876
Q ss_pred CcHHHHHHHHH
Q 047286 248 EGAYSQLVRLQ 258 (632)
Q Consensus 248 ~~~~~~~~~~~ 258 (632)
++.|.+++..+
T Consensus 560 ~~~y~~l~~~~ 570 (585)
T TIGR01192 560 DGRFYKLLRRS 570 (585)
T ss_pred CChHHHHHHhC
Confidence 67888887654
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-31 Score=271.15 Aligned_cols=200 Identities=33% Similarity=0.551 Sum_probs=179.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCCCC-----------------------------CcEEEEeeCCCEEEEEcCC
Q 047286 52 TSLNVNAFAAGQAAACKMFETIERIPKINPYD-----------------------------NRFLQHVPSGTTVALVGQS 102 (632)
Q Consensus 52 ~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~-----------------------------~~~~~~i~~Ge~~~ivG~s 102 (632)
++..+..+.+++.-.++++++++.+.++.... ..+||++++|+.++++|||
T Consensus 219 lg~~Yrei~q~ltdme~mfdLl~~~~~v~d~pda~~L~~~~~g~v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~S 298 (497)
T COG5265 219 LGFSYREIRQALTDMEKMFDLLDVEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGES 298 (497)
T ss_pred hHHHHHHHHHhhhhHHHHHHhhccchhhccCCCCccccccccceEEEEEEEeeccccchhhcCccccccCccEEEEEeCC
Confidence 34557789999999999999998766542110 0189999999999999999
Q ss_pred CchHHHHHHHHHhCCCCCcH-----------------HhhcceEEEcccCcccccccccccccccCCCCCCHHHHHHHHH
Q 047286 103 GSGKSTVINLVESFRFYAPE-----------------AEQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQ 165 (632)
Q Consensus 103 GsGKSTLl~ll~~~~~~~~~-----------------~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 165 (632)
|+||||+++++- |+|+++ .+|+.||.|||+..+|++++.. |+.++++..+++++..+++
T Consensus 299 G~gKsTI~rllf--RFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~y--ni~ygr~~at~eev~aaa~ 374 (497)
T COG5265 299 GAGKSTILRLLF--RFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAY--NIKYGRPDATAEEVGAAAE 374 (497)
T ss_pred CCcHHHHHHHHH--HHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHH--HHhccCccccHHHHHHHHH
Confidence 999999999997 777654 2688999999999999999988 7999999999999999999
Q ss_pred HccchhhHhhCCcccccccc--------------------------------cCCCCHHHHHHHHHHHHHHhCCceEEEE
Q 047286 166 LANAEKSIDKLPLGLDTVVA--------------------------------TNAVDAQSERIVQAAMVKLVTNQTVVIV 213 (632)
Q Consensus 166 ~~~l~~~i~~l~~g~~~~v~--------------------------------ts~LD~~~~~~i~~~l~~~~~~~tviii 213 (632)
.+.+++++..+|.|+++.|+ ||+||.+++++++..|++...++|.++|
T Consensus 375 ~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlvi 454 (497)
T COG5265 375 AAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVI 454 (497)
T ss_pred HhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEE
Confidence 99999999999999999883 9999999999999999999999999999
Q ss_pred ecCchHHhhcCeEEEEeCCeEEEecChhHHhcCCCcHHHHHHH
Q 047286 214 ANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVR 256 (632)
Q Consensus 214 tH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~ 256 (632)
.|+++++-.||.|+||++|+|+|.|+|++|+.. ++.|.++|.
T Consensus 455 ahrlsti~~adeiivl~~g~i~erg~h~~ll~~-~g~ya~mw~ 496 (497)
T COG5265 455 AHRLSTIIDADEIIVLDNGRIVERGTHEELLAA-GGLYAEMWR 496 (497)
T ss_pred eehhhhccCCceEEEeeCCEEEecCcHHHHHHc-CChHHHHhc
Confidence 999999999999999999999999999999988 889998873
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=294.62 Aligned_cols=252 Identities=35% Similarity=0.504 Sum_probs=209.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------------------------------------
Q 047286 3 ACLPAIVIAGGITATVVAKLSCRGQIAYAEAEMLLSTQLEP--------------------------------------- 43 (632)
Q Consensus 3 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~--------------------------------------- 43 (632)
+.+|+++++..++.+...+..++.++..++.++.+.|.+.|
T Consensus 166 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (576)
T TIGR02204 166 LAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLT 245 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777778888999999999999999999999999954
Q ss_pred -----------------------CCcccHHHH-----------------HHHHHHHHHHHHHHHHHHHHhccCCCCC---
Q 047286 44 -----------------------LEDMPLGQT-----------------SLNVNAFAAGQAAACKMFETIERIPKIN--- 80 (632)
Q Consensus 44 -----------------------~~~~~~~~~-----------------~~~~~~~~~~~~a~~ri~~~~~~~~~~~--- 80 (632)
.+.+++|.+ ...+..+++++++++|+.++++.+++.+
T Consensus 246 ~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~ 325 (576)
T TIGR02204 246 AIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPA 325 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCC
Confidence 233444442 2346778999999999999986533210
Q ss_pred -------C---------------C-C-----CcEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC-------------
Q 047286 81 -------P---------------Y-D-----NRFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY------------- 119 (632)
Q Consensus 81 -------~---------------~-~-----~~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~------------- 119 (632)
+ . + +.+||++++||.++|+||||||||||+++|+|+...
T Consensus 326 ~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~ 405 (576)
T TIGR02204 326 HPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLR 405 (576)
T ss_pred CCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHH
Confidence 0 0 0 128999999999999999999999999999854221
Q ss_pred --CcHHhhcceEEEcccCcccccccccccccccCCCCCCHHHHHHHHHHccchhhHhhCCccccccc-------------
Q 047286 120 --APEAEQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV------------- 184 (632)
Q Consensus 120 --~~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~~~v------------- 184 (632)
++..++++++|+||+|++|.+++++ |+.++.++.+++++.++++.+++.++++++|.|+++.+
T Consensus 406 ~~~~~~~~~~i~~~~Q~~~lf~~Ti~~--Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Q 483 (576)
T TIGR02204 406 QLDPAELRARMALVPQDPVLFAASVME--NIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQ 483 (576)
T ss_pred hcCHHHHHHhceEEccCCccccccHHH--HHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHH
Confidence 2334678899999999999999988 78888777788999999999999999999999998876
Q ss_pred -------------------ccCCCCHHHHHHHHHHHHHHhCCceEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHhc
Q 047286 185 -------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIE 245 (632)
Q Consensus 185 -------------------~ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~ 245 (632)
+||+||+.+++.+.+.++++.+++|+|+|||+++.+..||+|++|++|++++.|+++++.+
T Consensus 484 rl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~ 563 (576)
T TIGR02204 484 RIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIA 563 (576)
T ss_pred HHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHH
Confidence 3999999999999999999888899999999999999999999999999999999999987
Q ss_pred CCCcHHHHHHHH
Q 047286 246 DPEGAYSQLVRL 257 (632)
Q Consensus 246 ~~~~~~~~~~~~ 257 (632)
. ++.|.+++..
T Consensus 564 ~-~~~~~~l~~~ 574 (576)
T TIGR02204 564 K-GGLYARLARL 574 (576)
T ss_pred c-CChHHHHHhh
Confidence 5 6778777643
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-30 Score=316.53 Aligned_cols=197 Identities=23% Similarity=0.331 Sum_probs=171.2
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCC--------CC-----C-------------------CcEEEEeeCCCEEEEEcCC
Q 047286 55 NVNAFAAGQAAACKMFETIERIPKIN--------PY-----D-------------------NRFLQHVPSGTTVALVGQS 102 (632)
Q Consensus 55 ~~~~~~~~~~a~~ri~~~~~~~~~~~--------~~-----~-------------------~~~~~~i~~Ge~~~ivG~s 102 (632)
.+..++.+.+|++|+.++++.+++.+ +. . +.+||+|++||.+||||+|
T Consensus 1242 ~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrT 1321 (1522)
T TIGR00957 1242 MSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRT 1321 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCC
Confidence 45678899999999999997654321 00 0 0199999999999999999
Q ss_pred CchHHHHHHHHHhCCCCCc-----------------HHhhcceEEEcccCcccccccccccccccCCCCCCHHHHHHHHH
Q 047286 103 GSGKSTVINLVESFRFYAP-----------------EAEQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQ 165 (632)
Q Consensus 103 GsGKSTLl~ll~~~~~~~~-----------------~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 165 (632)
|||||||+++|. ++++| ..+|+++++|||+|.+|.+|+++ |+.... +.+++++.++++
T Consensus 1322 GsGKSTL~~lL~--rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~--NLdp~~-~~sdeei~~al~ 1396 (1522)
T TIGR00957 1322 GAGKSSLTLGLF--RINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRM--NLDPFS-QYSDEEVWWALE 1396 (1522)
T ss_pred CCCHHHHHHHHh--cCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHH--HcCccc-CCCHHHHHHHHH
Confidence 999999999998 44443 34799999999999999999998 676322 578999999999
Q ss_pred HccchhhHhhCCccccccc--------------------------------ccCCCCHHHHHHHHHHHHHHhCCceEEEE
Q 047286 166 LANAEKSIDKLPLGLDTVV--------------------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIV 213 (632)
Q Consensus 166 ~~~l~~~i~~l~~g~~~~v--------------------------------~ts~LD~~~~~~i~~~l~~~~~~~tviii 213 (632)
.+++++++.++|+|++|.+ +||+||+++++.+++.|++..+++|+|+|
T Consensus 1397 ~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~I 1476 (1522)
T TIGR00957 1397 LAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTI 1476 (1522)
T ss_pred HcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 9999999999999999888 39999999999999999998889999999
Q ss_pred ecCchHHhhcCeEEEEeCCeEEEecChhHHhcCCCcHHHHHHHH
Q 047286 214 ANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRL 257 (632)
Q Consensus 214 tH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~~ 257 (632)
+|+++++..||+|++|++|+|+|.|+|+||+++ ++.|.++++.
T Consensus 1477 AHRl~ti~~~DrIlVld~G~IvE~G~~~eLl~~-~~~f~~l~~~ 1519 (1522)
T TIGR00957 1477 AHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQ-RGIFYSMAKD 1519 (1522)
T ss_pred ecCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CCHHHHHHHH
Confidence 999999999999999999999999999999987 6888888754
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.6e-30 Score=286.63 Aligned_cols=240 Identities=23% Similarity=0.283 Sum_probs=197.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----------------------------------------
Q 047286 4 CLPAIVIAGGITATVVAKLSCRGQIAYAEAEMLLSTQLEP---------------------------------------- 43 (632)
Q Consensus 4 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~---------------------------------------- 43 (632)
.+|+++++..++.++.++..++.++..++.++.+.|.+.|
T Consensus 150 ~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (544)
T TIGR01842 150 GAVVLVGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSN 229 (544)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666777888888899999999999999999943
Q ss_pred ----------------------CCcccHHHH-----------------HHHHHHHHHHHHHHHHHHHHhccCCCCCC---
Q 047286 44 ----------------------LEDMPLGQT-----------------SLNVNAFAAGQAAACKMFETIERIPKINP--- 81 (632)
Q Consensus 44 ----------------------~~~~~~~~~-----------------~~~~~~~~~~~~a~~ri~~~~~~~~~~~~--- 81 (632)
.|.+++|++ ...+..+++++++++|+.++++.+++...
T Consensus 230 ~~~~~~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~ 309 (544)
T TIGR01842 230 LSKYFRIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPAMP 309 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCCCC
Confidence 234455543 23456789999999999999976433110
Q ss_pred ----------------C--C-----CcEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC---------------CcHH
Q 047286 82 ----------------Y--D-----NRFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY---------------APEA 123 (632)
Q Consensus 82 ----------------~--~-----~~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~---------------~~~~ 123 (632)
+ . +++||++++|++++|+||||||||||+++|.|.... ++..
T Consensus 310 ~~~~~~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~ 389 (544)
T TIGR01842 310 LPEPEGHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRET 389 (544)
T ss_pred CCCCCCeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHH
Confidence 0 0 128999999999999999999999999999854211 1234
Q ss_pred hhcceEEEcccCcccccccccccccccCCCCCCHHHHHHHHHHccchhhHhhCCccccccc-------------------
Q 047286 124 EQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV------------------- 184 (632)
Q Consensus 124 ~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~~~v------------------- 184 (632)
+|+.++||+|+|++|.+++++ |+.++.++.+++++.++++.++++++++++|.|++|.+
T Consensus 390 ~~~~i~~v~q~~~lf~~ti~~--Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lAR 467 (544)
T TIGR01842 390 FGKHIGYLPQDVELFPGTVAE--NIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALAR 467 (544)
T ss_pred HhhheEEecCCcccccccHHH--HHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHH
Confidence 678899999999999999987 78766666788999999999999999999999998876
Q ss_pred -------------ccCCCCHHHHHHHHHHHHHHh-CCceEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHhc
Q 047286 185 -------------ATNAVDAQSERIVQAAMVKLV-TNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIE 245 (632)
Q Consensus 185 -------------~ts~LD~~~~~~i~~~l~~~~-~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~ 245 (632)
+|++||+++++.+.+.++++. +++|+|++||+++.++.||+|++|++|++++.|+++++.+
T Consensus 468 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 468 ALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred HHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 399999999999999999985 5799999999999888899999999999999999999864
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-28 Score=274.74 Aligned_cols=269 Identities=18% Similarity=0.160 Sum_probs=173.6
Q ss_pred hhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-HhH------------
Q 047286 348 IGAVGARLSTDASAVRSVVGDALGLIIQNIATIAAGLVIAFTA-WKLAFITLAVPSLTIAEGYL-KKK------------ 413 (632)
Q Consensus 348 ~G~l~srls~D~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~l~lv~l~~~~l~~~~~~~-~~~------------ 413 (632)
.|++++|+++|++.+...+. .+..++..++.+++.+++++.. |++++++++..|+.+...+. .++
T Consensus 104 ~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 182 (547)
T PRK10522 104 SASLLASLTSDVRNITIAFV-RLPELVQGIILTLGSAAYLAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETE 182 (547)
T ss_pred ccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 49999999999999998765 4666777777777777777766 99998887776665433211 110
Q ss_pred --------------H-----H------HHHH--------------------H----H-HHHHHhhhhHHhhcC-----Cc
Q 047286 414 --------------K-----N------YERL--------------------H----I-NAFCFFIGSKLVEHG-----DA 438 (632)
Q Consensus 414 --------------~-----~------~~~~--------------------~----~-~~~~~~~g~~~v~~g-----~~ 438 (632)
+ . +.+. . . ......++..++..+ ..
T Consensus 183 ~~~~~~~~e~l~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (547)
T PRK10522 183 DKLYNDYQTVLEGRKELTLNRERAEYVFENEYEPDAQEYRHHIIRADTFHLSAVNWSNIMMLGAIGLVFYMANSLGWADT 262 (547)
T ss_pred HHHHHHHHHHHhhhHhhhccHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCh
Confidence 0 0 0000 0 0 000011222222221 22
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHccCCCCCCCCCCCCC--------------------CCcc
Q 047286 439 TFGEVFKFLSEFGCFWCLESTAVAPNADKAKGSAASIFEILESKPKIDWSSKDGMT--------------------PSTV 498 (632)
Q Consensus 439 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~--------------------~~~~ 498 (632)
+...++.+.......++..........+.+..+.+|+.++++.+++.+.+...... ..+.
T Consensus 263 ~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~l~~i 342 (547)
T PRK10522 263 NVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEFPRPQAFPDWQTLELRNVTFAYQDNGFSVGPI 342 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccCcCceEEEEEEEEEeCCCCeEEecc
Confidence 22222222222223456677777778889999999999987554322111100000 0000
Q ss_pred cccEEEeeEEEEEecCCCChHHHHHhhhcCCChhh------------hcHHHH--------------------------H
Q 047286 499 RGDIVFEHTVALVGENGNGKSTVISLAERFHNPEQ------------VIYSWI--------------------------I 540 (632)
Q Consensus 499 ~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~------------~~~~~~--------------------------~ 540 (632)
+-+|+-++++|||||||||||||+++|+|+|+|++ ...... .
T Consensus 343 ~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~ 422 (547)
T PRK10522 343 NLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPEGKPANP 422 (547)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccccCchHH
Confidence 11222334899999999999999999999999854 000000 1
Q ss_pred HHHHHHHhcCCCccCcccccC---CCCCChHHHHHHHHHHHHhh------------------------------------
Q 047286 541 IKCTNFIASLPQGSDLNVGER---GLQLSGGLKQRIARTRARNY------------------------------------ 581 (632)
Q Consensus 541 ~~~~~~i~~lp~g~dt~vge~---G~~LSgGQrQRiaiARA~~~------------------------------------ 581 (632)
..+.+++..++.+.++..+++ |.+|||||||||+||||+++
T Consensus 423 ~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~t 502 (547)
T PRK10522 423 ALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKT 502 (547)
T ss_pred HHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCE
Confidence 145678888887777776665 89999999999999999655
Q ss_pred -hccccchhhhhcCCEEEEEeCCeEeee-cChHHHhcc
Q 047286 582 -CGCGSPPYHYKNADITSVVKNGVIAEK-GRHDALMKI 617 (632)
Q Consensus 582 -~~iahrl~~~~~aD~I~vl~~G~ive~-G~h~eL~~~ 617 (632)
+++|||+++++.||+|++|++|+|+|. |+|.+-..+
T Consensus 503 vi~itH~~~~~~~~d~i~~l~~G~i~e~~~~~~~~~~~ 540 (547)
T PRK10522 503 IFAISHDDHYFIHADRLLEMRNGQLSELTGEERDAASR 540 (547)
T ss_pred EEEEEechHHHHhCCEEEEEECCEEEEecCCchhhhhh
Confidence 688999999999999999999999996 888877665
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-29 Score=307.02 Aligned_cols=170 Identities=22% Similarity=0.370 Sum_probs=152.5
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCC---------------CCCcHHhhcceEEEcccCccccccccccccccc
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFR---------------FYAPEAEQEKIGLVSKEPIFLFCDFNEGQYIPY 150 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~---------------~~~~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~ 150 (632)
+||+|++||.+||||+||||||||+++|.++- .++..++|++|+||||+|.+|.+|+++ |+..
T Consensus 1329 vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIre--NIdp 1406 (1560)
T PTZ00243 1329 VSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQ--NVDP 1406 (1560)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHH--HhCc
Confidence 99999999999999999999999999998331 122345899999999999999999998 6765
Q ss_pred CCCCCCHHHHHHHHHHccchhhHhhCCccccccc---------------------------------ccCCCCHHHHHHH
Q 047286 151 GKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV---------------------------------ATNAVDAQSERIV 197 (632)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~~~v---------------------------------~ts~LD~~~~~~i 197 (632)
. .+.+++++.++++.+++++++.++|.|++|.+ +||+||+++++.+
T Consensus 1407 ~-~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~I 1485 (1560)
T PTZ00243 1407 F-LEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQI 1485 (1560)
T ss_pred c-cCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHH
Confidence 4 35789999999999999999999999999877 3999999999999
Q ss_pred HHHHHHHhCCceEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHhcCCCcHHHHHHHHH
Q 047286 198 QAAMVKLVTNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQ 258 (632)
Q Consensus 198 ~~~l~~~~~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~~~ 258 (632)
++.|++..+++|+|+|+|+++++..||+|++|++|+|++.|+|+||++++++.|..+++.+
T Consensus 1486 q~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~ 1546 (1560)
T PTZ00243 1486 QATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEAL 1546 (1560)
T ss_pred HHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHh
Confidence 9999998889999999999999999999999999999999999999986678898888654
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-29 Score=284.52 Aligned_cols=154 Identities=18% Similarity=0.193 Sum_probs=105.7
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC-CcHHhhcceEEEcccCccccccc----------------------
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY-APEAEQEKIGLVSKEPIFLFCDF---------------------- 142 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~-~~~~~r~~i~~v~Q~~~~~~~~~---------------------- 142 (632)
+||+|++|+++|||||||||||||+++|+|.... .| -...|+|++|++.....+.
T Consensus 196 isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p--~~g~I~~~~Q~~~g~~~t~~~~v~~~~~~~~~~~~~~~~~~ 273 (718)
T PLN03073 196 ASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIP--KNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLEEEAQLV 273 (718)
T ss_pred CEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCC--CCCEEEEEeccCCCCCCCHHHHHHHhhHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999864210 11 1245777777632110000
Q ss_pred -----------ccccccc--cCCC-C-------------------CCHHHHHHHHHHccc-----hhhHhhCCccccccc
Q 047286 143 -----------NEGQYIP--YGKQ-N-------------------ASDEHIRPAVQLANA-----EKSIDKLPLGLDTVV 184 (632)
Q Consensus 143 -----------~~~~~i~--~~~~-~-------------------~~~~~~~~~~~~~~l-----~~~i~~l~~g~~~~v 184 (632)
..+.... .+.. . ..++++.+++...++ +..+..||+|..+++
T Consensus 274 ~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~~~~~~~~LSgG~k~rv 353 (718)
T PLN03073 274 AQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKATKTFSGGWRMRI 353 (718)
T ss_pred HHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChHHHhCchhhCCHHHHHHH
Confidence 0000000 0000 0 001223334444444 234678999998887
Q ss_pred -----------------ccCCCCHHHHHHHHHHHHHHhCCceEEEEecCchHHhh-cCeEEEEeCCeEE-EecChhHH
Q 047286 185 -----------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRN-ADCIIMVSKGKIV-EKGTHDEL 243 (632)
Q Consensus 185 -----------------~ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~-aD~i~vl~~G~i~-~~g~~~el 243 (632)
+|++||+.+...+.+.|+++ +.|+|+|||+...+.. ||+|++|++|++. ..|++++.
T Consensus 354 ~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~~tviivsHd~~~l~~~~d~i~~l~~g~i~~~~g~~~~~ 429 (718)
T PLN03073 354 ALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW--PKTFIVVSHAREFLNTVVTDILHLHGQKLVTYKGDYDTF 429 (718)
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 39999999999999999886 6799999999999876 9999999999996 56776654
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-27 Score=289.30 Aligned_cols=159 Identities=15% Similarity=0.207 Sum_probs=118.5
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC-------------cH--HhhcceEEEcccCcccccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA-------------PE--AEQEKIGLVSKEPIFLFCDFNEGQYIP 149 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~-------------~~--~~r~~i~~v~Q~~~~~~~~~~~~~~i~ 149 (632)
++|+.+++|++++|+||||||||||+|+|+|..... .. ..++.++||+|++.++. .++..+++.
T Consensus 183 ~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~-~lTV~EtL~ 261 (1470)
T PLN03140 183 DASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVG-VMTVKETLD 261 (1470)
T ss_pred CCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCC-cCcHHHHHH
Confidence 499999999999999999999999999998653211 00 12567999999976443 333333554
Q ss_pred cCCC------------CCC-H---------H------------------HHHHHHHHccchh---------hHhhCCccc
Q 047286 150 YGKQ------------NAS-D---------E------------------HIRPAVQLANAEK---------SIDKLPLGL 180 (632)
Q Consensus 150 ~~~~------------~~~-~---------~------------------~~~~~~~~~~l~~---------~i~~l~~g~ 180 (632)
+... ... . + .++.+++..++++ .+..+|+|+
T Consensus 262 f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGe 341 (1470)
T PLN03140 262 FSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQ 341 (1470)
T ss_pred HHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCccc
Confidence 3210 000 0 0 1244666666643 456899999
Q ss_pred ccccc-----------------cCCCCHHHHHHHHHHHHHHh--CCceEEEEecCch-H-HhhcCeEEEEeCCeEEEecC
Q 047286 181 DTVVA-----------------TNAVDAQSERIVQAAMVKLV--TNQTVVIVANCLI-T-IRNADCIIMVSKGKIVEKGT 239 (632)
Q Consensus 181 ~~~v~-----------------ts~LD~~~~~~i~~~l~~~~--~~~tviiitH~~~-~-~~~aD~i~vl~~G~i~~~g~ 239 (632)
++++. |+|||+.+...+.+.|+++. .++|+|+++|++. . ...+|+|++|++|+++..|+
T Consensus 342 rkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~ 421 (1470)
T PLN03140 342 KKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGP 421 (1470)
T ss_pred ceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCC
Confidence 98883 89999999999999999985 3789999999863 4 45699999999999999999
Q ss_pred hhHHh
Q 047286 240 HDELI 244 (632)
Q Consensus 240 ~~el~ 244 (632)
.+++.
T Consensus 422 ~~~~~ 426 (1470)
T PLN03140 422 RDHIL 426 (1470)
T ss_pred HHHHH
Confidence 99875
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-28 Score=283.68 Aligned_cols=192 Identities=29% Similarity=0.277 Sum_probs=137.6
Q ss_pred cCCcCHHHHHHHHHHHHH--HHHHHHHhHHhHHHHHHHHHHHHHHHHccCCCCC-----------------------CCC
Q 047286 435 HGDATFGEVFKFLSEFGC--FWCLESTAVAPNADKAKGSAASIFEILESKPKID-----------------------WSS 489 (632)
Q Consensus 435 ~g~~s~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~-----------------------~~~ 489 (632)
.+.++....+..++.+.. .++...........++.++.+|+.+++..+.... |..
T Consensus 451 ~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~~~~~~~~~~i~i~~~sfsW~~ 530 (1381)
T KOG0054|consen 451 GNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVERSPDEAGENAIEIKNGSFSWDS 530 (1381)
T ss_pred CccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCccccccCCCCCCCceEEEeeeeEecCC
Confidence 445666555555533331 2333344445556678899999999986543211 111
Q ss_pred CCCC-CCCcccccEEEeeEEEEEecCCCChHHHHHhhhcCCChhh-----------------------------------
Q 047286 490 KDGM-TPSTVRGDIVFEHTVALVGENGNGKSTVISLAERFHNPEQ----------------------------------- 533 (632)
Q Consensus 490 ~~~~-~~~~~~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~----------------------------------- 533 (632)
++.. ...+++-+|.-++.+||||++|||||||++.+.|-.+..+
T Consensus 531 ~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI~ngTvreNILFG~~~d~ 610 (1381)
T KOG0054|consen 531 ESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQNGTVRENILFGSPYDE 610 (1381)
T ss_pred CCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHhhCCcHHHhhhcCccccH
Confidence 0000 0111122344455899999999999999999998644311
Q ss_pred --hcHHHHHHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh------------------------------
Q 047286 534 --VIYSWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY------------------------------ 581 (632)
Q Consensus 534 --~~~~~~~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~------------------------------ 581 (632)
+........+.+.++.||.|-.|+|||+|.||||||||||+||||..+
T Consensus 611 ~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~ 690 (1381)
T KOG0054|consen 611 ERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGL 690 (1381)
T ss_pred HHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhh
Confidence 222222335668899999999999999999999999999999999433
Q ss_pred ------hccccchhhhhcCCEEEEEeCCeEeeecChHHHhccCCchhHHHHH
Q 047286 582 ------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKITDGTYASLTA 627 (632)
Q Consensus 582 ------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~~ 627 (632)
|.+||.++.+++||+|+||+||+|+|+|||+||++. ++.|.+|.+
T Consensus 691 L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~~-~~~~~~l~~ 741 (1381)
T KOG0054|consen 691 LRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLKS-GGDFAELAH 741 (1381)
T ss_pred hcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHhc-chhHHHHhh
Confidence 899999999999999999999999999999999987 888888853
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-27 Score=284.05 Aligned_cols=159 Identities=16% Similarity=0.281 Sum_probs=127.8
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC--------------cHHhhcceEEEcccCcccccccccccccccC
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA--------------PEAEQEKIGLVSKEPIFLFCDFNEGQYIPYG 151 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~--------------~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~ 151 (632)
+||++++||+++|+||||||||||+++|.|+...+ ....|+.+||++|++.++. .++..+++.+.
T Consensus 949 lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~-~LTV~E~L~f~ 1027 (2272)
T TIGR01257 949 LNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFH-HLTVAEHILFY 1027 (2272)
T ss_pred eEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEEEecCCcCCC-CCCHHHHHHHH
Confidence 99999999999999999999999999998763211 1235678999999987654 33333356542
Q ss_pred C--CCC----CHHHHHHHHHHccchh----hHhhCCcccccccc-----------------cCCCCHHHHHHHHHHHHHH
Q 047286 152 K--QNA----SDEHIRPAVQLANAEK----SIDKLPLGLDTVVA-----------------TNAVDAQSERIVQAAMVKL 204 (632)
Q Consensus 152 ~--~~~----~~~~~~~~~~~~~l~~----~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~~l~~~ 204 (632)
. ... ..+++.+.++..++.+ .+.+||+|++++++ |++||+.+++.+++.|+++
T Consensus 1028 ~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l 1107 (2272)
T TIGR01257 1028 AQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKY 1107 (2272)
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHH
Confidence 1 111 1345677888888754 46789999998883 9999999999999999999
Q ss_pred hCCceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhc
Q 047286 205 VTNQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIE 245 (632)
Q Consensus 205 ~~~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~ 245 (632)
++++|+|++||+++.+.. ||||++|++|++++.|+++++.+
T Consensus 1108 ~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~ 1149 (2272)
T TIGR01257 1108 RSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKN 1149 (2272)
T ss_pred hCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHH
Confidence 778999999999999875 99999999999999999998864
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-29 Score=284.19 Aligned_cols=158 Identities=18% Similarity=0.257 Sum_probs=112.1
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHHh----hcceEEEcccCcccc-cccccc--------------
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAE----QEKIGLVSKEPIFLF-CDFNEG-------------- 145 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~~----r~~i~~v~Q~~~~~~-~~~~~~-------------- 145 (632)
.+||+|++|++++|+||||||||||+++|+|....+...+ ...++|++|.+.... .++.+.
T Consensus 21 ~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~ 100 (635)
T PRK11147 21 NAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKR 100 (635)
T ss_pred CcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHH
Confidence 3999999999999999999999999999996533222111 123678887652110 111000
Q ss_pred --------------ccccc--------CC--CCCCHHHHHHHHHHccc--hhhHhhCCcccccccc--------------
Q 047286 146 --------------QYIPY--------GK--QNASDEHIRPAVQLANA--EKSIDKLPLGLDTVVA-------------- 185 (632)
Q Consensus 146 --------------~~i~~--------~~--~~~~~~~~~~~~~~~~l--~~~i~~l~~g~~~~v~-------------- 185 (632)
+++.. .. ......++.++++..++ +..+..||+|++++++
T Consensus 101 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~LSgGekqRv~LAraL~~~P~lLLL 180 (635)
T PRK11147 101 YHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDAALSSLSGGWLRKAALGRALVSNPDVLLL 180 (635)
T ss_pred HHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCCCCchhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 00000 00 00123456667777765 4567899999998883
Q ss_pred ---cCCCCHHHHHHHHHHHHHHhCCceEEEEecCchHHhh-cCeEEEEeCCeEEE-ecChhHHh
Q 047286 186 ---TNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRN-ADCIIMVSKGKIVE-KGTHDELI 244 (632)
Q Consensus 186 ---ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~-aD~i~vl~~G~i~~-~g~~~el~ 244 (632)
|++||+.+.+.+.+.|+++. .|+|+|||+...+.. ||+|++|++|+++. .|++++..
T Consensus 181 DEPt~~LD~~~~~~L~~~L~~~~--~tvlivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~~~ 242 (635)
T PRK11147 181 DEPTNHLDIETIEWLEGFLKTFQ--GSIIFISHDRSFIRNMATRIVDLDRGKLVSYPGNYDQYL 242 (635)
T ss_pred cCCCCccCHHHHHHHHHHHHhCC--CEEEEEeCCHHHHHHhcCeEEEEECCEEEEecCCHHHHH
Confidence 99999999999999999873 599999999998865 99999999999974 57776654
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-28 Score=274.16 Aligned_cols=225 Identities=28% Similarity=0.378 Sum_probs=185.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------------------------------------
Q 047286 3 ACLPAIVIAGGITATVVAKLSCRGQIAYAEAEMLLSTQLEP--------------------------------------- 43 (632)
Q Consensus 3 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~--------------------------------------- 43 (632)
+.+|+++++..++.++.++..++.++..++.++.+.|.+.|
T Consensus 152 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (529)
T TIGR02857 152 LTAPLIPIFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSS 231 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666677788888888999999999999999999954
Q ss_pred -----------------------CCcccHHHH-----------------HHHHHHHHHHHHHHHHHHHHhccCCCCC---
Q 047286 44 -----------------------LEDMPLGQT-----------------SLNVNAFAAGQAAACKMFETIERIPKIN--- 80 (632)
Q Consensus 44 -----------------------~~~~~~~~~-----------------~~~~~~~~~~~~a~~ri~~~~~~~~~~~--- 80 (632)
.+.+++|.+ ...+..+++++.+++|+.++++.+++..
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~~ 311 (529)
T TIGR02857 232 AVLELFATLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGKA 311 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCc
Confidence 223444432 2346778999999999999997432210
Q ss_pred -----C--------------CC-----CcEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCC---------------CCc
Q 047286 81 -----P--------------YD-----NRFLQHVPSGTTVALVGQSGSGKSTVINLVESFRF---------------YAP 121 (632)
Q Consensus 81 -----~--------------~~-----~~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~---------------~~~ 121 (632)
. .. +.+|+++++|++++|+||||||||||+++|.|+.. .++
T Consensus 312 ~~~~~~~~~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~ 391 (529)
T TIGR02857 312 PVTAAPAPSLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADA 391 (529)
T ss_pred CCCCCCCCeEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCH
Confidence 0 00 12899999999999999999999999999985421 123
Q ss_pred HHhhcceEEEcccCcccccccccccccccCCCCCCHHHHHHHHHHccchhhHhhCCccccccc-----------------
Q 047286 122 EAEQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV----------------- 184 (632)
Q Consensus 122 ~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~~~v----------------- 184 (632)
..+|++++||+|+|++|.+++++ |+.++.++.+++++.++++.++++++++++|+|++|.+
T Consensus 392 ~~lr~~i~~v~Q~~~lf~~ti~~--Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~l 469 (529)
T TIGR02857 392 DSWRDQIAWVPQHPFLFAGTIAE--NIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLAL 469 (529)
T ss_pred HHHHhheEEEcCCCcccCcCHHH--HHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHH
Confidence 44788999999999999999998 78888777788999999999999999999999999877
Q ss_pred ---------------ccCCCCHHHHHHHHHHHHHHhCCceEEEEecCchHHhhcCeEEEE
Q 047286 185 ---------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRNADCIIMV 229 (632)
Q Consensus 185 ---------------~ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~aD~i~vl 229 (632)
+||+||+++++.+.+.++++.+++|+|+|||+++.++.||+|++|
T Consensus 470 aRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 470 ARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred HHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 299999999999999999988889999999999999999999885
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-28 Score=252.38 Aligned_cols=196 Identities=23% Similarity=0.364 Sum_probs=170.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC---------------------CC-----CcEEEEeeCCCEEEEEcCC
Q 047286 49 LGQTSLNVNAFAAGQAAACKMFETIERIPKINP---------------------YD-----NRFLQHVPSGTTVALVGQS 102 (632)
Q Consensus 49 ~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~---------------------~~-----~~~~~~i~~Ge~~~ivG~s 102 (632)
+.+...++..|..++.|.+|+.+.+...|...+ .. ..+||++++||.++|||||
T Consensus 292 id~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~~m~LP~P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPS 371 (580)
T COG4618 292 IDLAIANWKQFVAARQSYKRLNELLAELPAAAERMPLPAPQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPS 371 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCCCCCCCceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCC
Confidence 334567899999999999999999987654211 00 1299999999999999999
Q ss_pred CchHHHHHHHHHhC---------------CCCCcHHhhcceEEEcccCcccccccccccccccCCCCCCHHHHHHHHHHc
Q 047286 103 GSGKSTVINLVESF---------------RFYAPEAEQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLA 167 (632)
Q Consensus 103 GsGKSTLl~ll~~~---------------~~~~~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 167 (632)
|||||||.|+|.|. +.++++.+-++|||.||+..+|.+|+.+ ||.-..++.+.+++.++.+.+
T Consensus 372 gSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIae--NIaRf~~~~d~~kIieAA~lA 449 (580)
T COG4618 372 GSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAE--NIARFGEEADPEKVIEAARLA 449 (580)
T ss_pred CccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHH--HHHhccccCCHHHHHHHHHHc
Confidence 99999999999653 3456677788999999999999999998 686555678899999999999
Q ss_pred cchhhHhhCCcccccccc--------------------------------cCCCCHHHHHHHHHHHHHHh-CCceEEEEe
Q 047286 168 NAEKSIDKLPLGLDTVVA--------------------------------TNAVDAQSERIVQAAMVKLV-TNQTVVIVA 214 (632)
Q Consensus 168 ~l~~~i~~l~~g~~~~v~--------------------------------ts~LD~~~~~~i~~~l~~~~-~~~tviiit 214 (632)
+.|+.|.++|+||+|.|+ -|+||.+.|+.+.++|...+ +|.|+|+||
T Consensus 450 gvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvvia 529 (580)
T COG4618 450 GVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIA 529 (580)
T ss_pred ChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEe
Confidence 999999999999999994 58999999999999999986 588999999
Q ss_pred cCchHHhhcCeEEEEeCCeEEEecChhHHhcC
Q 047286 215 NCLITIRNADCIIMVSKGKIVEKGTHDELIED 246 (632)
Q Consensus 215 H~~~~~~~aD~i~vl~~G~i~~~g~~~el~~~ 246 (632)
|+++.+..+|+|++|++|++...|+.+|++.+
T Consensus 530 HRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 530 HRPSALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred cCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 99999999999999999999999999998754
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=292.48 Aligned_cols=200 Identities=16% Similarity=0.270 Sum_probs=170.0
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCC--------------------------CCCC--------------------cEEEE
Q 047286 56 VNAFAAGQAAACKMFETIERIPKIN--------------------------PYDN--------------------RFLQH 89 (632)
Q Consensus 56 ~~~~~~~~~a~~ri~~~~~~~~~~~--------------------------~~~~--------------------~~~~~ 89 (632)
+..+..++.|.+|+.++++.+++.. +... .+||+
T Consensus 1162 ~~~le~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~is~~ 1241 (1490)
T TIGR01271 1162 SIDVDGLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFS 1241 (1490)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCCCcceeeccEEE
Confidence 4567888999999999987654321 0000 18999
Q ss_pred eeCCCEEEEEcCCCchHHHHHHHHHhCCC--------------CCcHHhhcceEEEcccCcccccccccccccccCCCCC
Q 047286 90 VPSGTTVALVGQSGSGKSTVINLVESFRF--------------YAPEAEQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNA 155 (632)
Q Consensus 90 i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~--------------~~~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~ 155 (632)
|++||.+||||+||||||||+++|.++.. .+...+|++++||||+|.+|.+|+++ |+.... ..
T Consensus 1242 I~~GekvaIvGrSGsGKSTLl~lL~rl~~~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~--NLdp~~-~~ 1318 (1490)
T TIGR01271 1242 VEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRK--NLDPYE-QW 1318 (1490)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHH--HhCccc-CC
Confidence 99999999999999999999999985421 12345799999999999999999998 665432 46
Q ss_pred CHHHHHHHHHHccchhhHhhCCccccccc--------------------------------ccCCCCHHHHHHHHHHHHH
Q 047286 156 SDEHIRPAVQLANAEKSIDKLPLGLDTVV--------------------------------ATNAVDAQSERIVQAAMVK 203 (632)
Q Consensus 156 ~~~~~~~~~~~~~l~~~i~~l~~g~~~~v--------------------------------~ts~LD~~~~~~i~~~l~~ 203 (632)
+++++.++++.+++++++.++|+|+++.+ +||+||+++++.+++.|++
T Consensus 1319 tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~ 1398 (1490)
T TIGR01271 1319 SDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQ 1398 (1490)
T ss_pred CHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 89999999999999999999999998877 3999999999999999999
Q ss_pred HhCCceEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHhcCCCcHHHHHHHHHh
Q 047286 204 LVTNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQE 259 (632)
Q Consensus 204 ~~~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~~~~ 259 (632)
..+++|+|+|||+++.+..||+|++|++|+|++.|+|++|++. ++.|.++++...
T Consensus 1399 ~~~~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~~-~~~f~~l~~~~~ 1453 (1490)
T TIGR01271 1399 SFSNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNE-TSLFKQAMSAAD 1453 (1490)
T ss_pred HcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHcC-CcHHHHHHHHhC
Confidence 8889999999999999999999999999999999999999974 678888876543
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.7e-29 Score=231.66 Aligned_cols=165 Identities=25% Similarity=0.340 Sum_probs=134.1
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC----------------CcHHhhcceEEEcccCccccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY----------------APEAEQEKIGLVSKEPIFLFCDFNEGQYI 148 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~----------------~~~~~r~~i~~v~Q~~~~~~~~~~~~~~i 148 (632)
.+|++|++||+++|+|||||||||||+||.++..+ +...+|+++|+|+|+..+|+ ..+..+|+
T Consensus 20 gi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFP-HlTvleNv 98 (240)
T COG1126 20 GISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFP-HLTVLENV 98 (240)
T ss_pred CcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccc-cchHHHHH
Confidence 39999999999999999999999999999755322 12347899999999988764 45555577
Q ss_pred ccCCC---CCC----HHHHHHHHHHccchhhHh----hCCcccccccc-----------------cCCCCHHHHHHHHHH
Q 047286 149 PYGKQ---NAS----DEHIRPAVQLANAEKSID----KLPLGLDTVVA-----------------TNAVDAQSERIVQAA 200 (632)
Q Consensus 149 ~~~~~---~~~----~~~~~~~~~~~~l~~~i~----~l~~g~~~~v~-----------------ts~LD~~~~~~i~~~ 200 (632)
.++.. ..+ .++..+.++.+++.+..+ +||+|++++|+ ||||||+...++.+.
T Consensus 99 ~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~v 178 (240)
T COG1126 99 TLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDV 178 (240)
T ss_pred HhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHH
Confidence 76531 122 344556777888776655 55678888884 999999999999999
Q ss_pred HHHHh-CCceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcCCCcH
Q 047286 201 MVKLV-TNQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIEDPEGA 250 (632)
Q Consensus 201 l~~~~-~~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~~~~~ 250 (632)
++++. +|.|.++|||++..++. ||||++|++|+|+++|+++++..+|.+.
T Consensus 179 m~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p~~~ 230 (240)
T COG1126 179 MKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPKSE 230 (240)
T ss_pred HHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCCCCH
Confidence 99996 47899999999999987 9999999999999999999999887654
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=99.96 E-value=7e-28 Score=269.26 Aligned_cols=159 Identities=26% Similarity=0.417 Sum_probs=137.7
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCC-----------C-------------CC------CcEEEEeeCCCEEEEEcCCCc
Q 047286 55 NVNAFAAGQAAACKMFETIERIPKIN-----------P-------------YD------NRFLQHVPSGTTVALVGQSGS 104 (632)
Q Consensus 55 ~~~~~~~~~~a~~ri~~~~~~~~~~~-----------~-------------~~------~~~~~~i~~Ge~~~ivG~sGs 104 (632)
.+..+++++++++|+.++++.+++.+ + ++ +++||++++||+++|+|||||
T Consensus 293 ~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGs 372 (529)
T TIGR02868 293 AAQALTRVRAAAERIEEVTGAKGPRPEGVVPAAGALGLGKPTLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGS 372 (529)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCcccCCCCceEEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCC
Confidence 35678999999999999997654310 0 00 128999999999999999999
Q ss_pred hHHHHHHHHHhCCCCCc----------------HHhhcceEEEcccCcccccccccccccccCCCCCCHHHHHHHHHHcc
Q 047286 105 GKSTVINLVESFRFYAP----------------EAEQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLAN 168 (632)
Q Consensus 105 GKSTLl~ll~~~~~~~~----------------~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 168 (632)
|||||+++|.| +++| .++|++++||||+|++|++|+++ |+.++.++.+++++.++++.++
T Consensus 373 GKSTLl~lL~g--~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~e--NI~~g~~~~~~e~i~~al~~a~ 448 (529)
T TIGR02868 373 GKSTLLMLLTG--LLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRD--NLRLGRPDATDEELWAALERVG 448 (529)
T ss_pred CHHHHHHHHhc--CCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccccHHH--HHhccCCCCCHHHHHHHHHHcC
Confidence 99999999984 3433 34678999999999999999998 7999988889999999999999
Q ss_pred chhhHhhCCccccccc--------------------------------ccCCCCHHHHHHHHHHHHHHhCCceEEEEecC
Q 047286 169 AEKSIDKLPLGLDTVV--------------------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANC 216 (632)
Q Consensus 169 l~~~i~~l~~g~~~~v--------------------------------~ts~LD~~~~~~i~~~l~~~~~~~tviiitH~ 216 (632)
+++++.++|+|++|.+ +||+||+++++.+++.+.+..+++|+|+|||+
T Consensus 449 l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHr 528 (529)
T TIGR02868 449 LADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHH 528 (529)
T ss_pred CHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 9999999999999987 29999999999999999998889999999998
Q ss_pred c
Q 047286 217 L 217 (632)
Q Consensus 217 ~ 217 (632)
+
T Consensus 529 l 529 (529)
T TIGR02868 529 L 529 (529)
T ss_pred C
Confidence 5
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6e-28 Score=269.45 Aligned_cols=141 Identities=18% Similarity=0.187 Sum_probs=103.6
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCc------------------HH-------h---hcceEEEcc----
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAP------------------EA-------E---QEKIGLVSK---- 133 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~------------------~~-------~---r~~i~~v~Q---- 133 (632)
++ ++++|++++|+||||||||||+|+|+|....+. .+ . +.++++.+|
T Consensus 93 l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~q~~~~ 171 (590)
T PRK13409 93 LP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQYVDL 171 (590)
T ss_pred CC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeecccchhh
Confidence 66 789999999999999999999999986522110 00 0 122455555
Q ss_pred cCcccccccccccccccCCCCCCHHHHHHHHHHccch----hhHhhCCcccccccc-----------------cCCCCHH
Q 047286 134 EPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAE----KSIDKLPLGLDTVVA-----------------TNAVDAQ 192 (632)
Q Consensus 134 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~----~~i~~l~~g~~~~v~-----------------ts~LD~~ 192 (632)
.|.+|..++.+ ++... ...+++.++++..++. ..+.+||+|+.++++ |++||+.
T Consensus 172 ~p~~~~~tv~e--~l~~~---~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~ 246 (590)
T PRK13409 172 IPKVFKGKVRE--LLKKV---DERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIR 246 (590)
T ss_pred hhhhhcchHHH--HHHhh---hHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHH
Confidence 34334444443 44321 1234567778777764 457789999998873 9999999
Q ss_pred HHHHHHHHHHHHhCCceEEEEecCchHHhh-cCeEEEEeCC
Q 047286 193 SERIVQAAMVKLVTNQTVVIVANCLITIRN-ADCIIMVSKG 232 (632)
Q Consensus 193 ~~~~i~~~l~~~~~~~tviiitH~~~~~~~-aD~i~vl~~G 232 (632)
++..+.+.|+++.+++|+|++||+++.+.. ||+|++|+++
T Consensus 247 ~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 247 QRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 999999999998668899999999999876 9999999763
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.6e-28 Score=228.30 Aligned_cols=168 Identities=21% Similarity=0.329 Sum_probs=137.1
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhC---------------CCCCcHHhhcceEEEcccCcccccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESF---------------RFYAPEAEQEKIGLVSKEPIFLFCDFNEGQYIP 149 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~---------------~~~~~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~ 149 (632)
++||+|++||+++++|||||||||+||+|..+ ..+++.++|++||||-|+..+|+ .++..+||.
T Consensus 19 ~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFP-h~Tv~eNIa 97 (309)
T COG1125 19 DVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFP-HLTVAENIA 97 (309)
T ss_pred eeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCC-CccHHHHHH
Confidence 39999999999999999999999999999733 12345668999999999988765 445455776
Q ss_pred cCCC------CCCHHHHHHHHHHccchh------hHhhCCcccccccc-----------------cCCCCHHHHHHHHHH
Q 047286 150 YGKQ------NASDEHIRPAVQLANAEK------SIDKLPLGLDTVVA-----------------TNAVDAQSERIVQAA 200 (632)
Q Consensus 150 ~~~~------~~~~~~~~~~~~~~~l~~------~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~~ 200 (632)
.-.. ...++++++.++.++++. +..+||+|.+++|+ ++||||.++..+++.
T Consensus 98 ~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e 177 (309)
T COG1125 98 TVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEE 177 (309)
T ss_pred hhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHH
Confidence 5321 223456778888888753 34567789999984 899999999999999
Q ss_pred HHHHhC--CceEEEEecCchHH-hhcCeEEEEeCCeEEEecChhHHhcCCCcHHHH
Q 047286 201 MVKLVT--NQTVVIVANCLITI-RNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQ 253 (632)
Q Consensus 201 l~~~~~--~~tviiitH~~~~~-~~aD~i~vl~~G~i~~~g~~~el~~~~~~~~~~ 253 (632)
++++.+ ++|+|+||||++++ +.+|||.+|++|+|+..++|++++.+|.+.|-+
T Consensus 178 ~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pan~FV~ 233 (309)
T COG1125 178 IKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPANDFVE 233 (309)
T ss_pred HHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCccHHHHH
Confidence 999864 79999999999776 559999999999999999999999988776653
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-27 Score=232.92 Aligned_cols=167 Identities=20% Similarity=0.374 Sum_probs=136.1
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC------------------cHHhhcceEEEcccCccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA------------------PEAEQEKIGLVSKEPIFLFCDFNEGQ 146 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~------------------~~~~r~~i~~v~Q~~~~~~~~~~~~~ 146 (632)
++||+|++||++||+|.||||||||++|+.++..++ ....|++||++||++.++. +.+..+
T Consensus 24 ~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLs-srTV~~ 102 (339)
T COG1135 24 DVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLS-SRTVFE 102 (339)
T ss_pred cceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccc-cchHHh
Confidence 399999999999999999999999999997553221 1236889999999998765 333344
Q ss_pred ccccCCC--CC----CHHHHHHHHHHccchhhHh----hCCcccccccc-----------------cCCCCHHHHHHHHH
Q 047286 147 YIPYGKQ--NA----SDEHIRPAVQLANAEKSID----KLPLGLDTVVA-----------------TNAVDAQSERIVQA 199 (632)
Q Consensus 147 ~i~~~~~--~~----~~~~~~~~~~~~~l~~~i~----~l~~g~~~~v~-----------------ts~LD~~~~~~i~~ 199 (632)
|+.|..+ .. ..+++.+.++.+++.+..+ +||+|++++|+ ||||||++.+.|.+
T Consensus 103 NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~ 182 (339)
T COG1135 103 NVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILE 182 (339)
T ss_pred hhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHH
Confidence 7877532 12 2456778888899876654 56688999883 99999999999999
Q ss_pred HHHHHhC--CceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcCCCcHHH
Q 047286 200 AMVKLVT--NQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIEDPEGAYS 252 (632)
Q Consensus 200 ~l~~~~~--~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~~~~~~~ 252 (632)
.|+++.+ |-|+++|||.++.++. ||||.+|++|+++|+|+..+++.+|.....
T Consensus 183 LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~~Pk~~~t 238 (339)
T COG1135 183 LLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANPKHAIT 238 (339)
T ss_pred HHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhcCcchHHH
Confidence 9999864 7899999999999987 999999999999999999999988765443
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-27 Score=221.17 Aligned_cols=163 Identities=22% Similarity=0.347 Sum_probs=136.4
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCC------------------C----CCcHHhhcceEEEcccCccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFR------------------F----YAPEAEQEKIGLVSKEPIFLFCDF 142 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~------------------~----~~~~~~r~~i~~v~Q~~~~~~~~~ 142 (632)
.+|++|++++++|++|||||||||+|+++..+. . .++.++|+++|+|+|.|.-|+.++
T Consensus 25 ~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp~SI 104 (253)
T COG1117 25 DINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSI 104 (253)
T ss_pred cCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCCCchH
Confidence 399999999999999999999999999985321 1 134568999999999999999999
Q ss_pred ccccccccCCCC------CCHHHHHHHHHHccchhhH--------hhCCcccccccc-----------------cCCCCH
Q 047286 143 NEGQYIPYGKQN------ASDEHIRPAVQLANAEKSI--------DKLPLGLDTVVA-----------------TNAVDA 191 (632)
Q Consensus 143 ~~~~~i~~~~~~------~~~~~~~~~~~~~~l~~~i--------~~l~~g~~~~v~-----------------ts~LD~ 191 (632)
.+ |+.+|.+. .-++.++++++.+.+++.+ ..|++|++++++ ||||||
T Consensus 105 yd--NVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDP 182 (253)
T COG1117 105 YD--NVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDP 182 (253)
T ss_pred HH--HHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCc
Confidence 88 78887431 1134466777777766543 358899998883 999999
Q ss_pred HHHHHHHHHHHHHhCCceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcCCCc
Q 047286 192 QSERIVQAAMVKLVTNQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIEDPEG 249 (632)
Q Consensus 192 ~~~~~i~~~l~~~~~~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~~~~ 249 (632)
.+...|.+.|.+++++-|+|+|||+++.+.+ +|+..++..|+++|.|+.++++.+|..
T Consensus 183 IsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF~~P~~ 241 (253)
T COG1117 183 ISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFTNPKH 241 (253)
T ss_pred hhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhhcCccH
Confidence 9999999999999999999999999988766 999999999999999999999987643
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.2e-25 Score=251.04 Aligned_cols=253 Identities=15% Similarity=0.072 Sum_probs=170.3
Q ss_pred hhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHhH------------
Q 047286 348 IGAVGARLSTDASAVRSVVGDALGLIIQNIATIAAGLVIAFT-A-WKLAFITLAVPSLTIAEGYLKKK------------ 413 (632)
Q Consensus 348 ~G~l~srls~D~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~-~-~~l~lv~l~~~~l~~~~~~~~~~------------ 413 (632)
.|++.+|+++|++.+.+.+...+..++..++.+++.++.++. . |.++++.++..|+.+....+..+
T Consensus 194 ~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~ 273 (659)
T TIGR00954 194 IQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQAL 273 (659)
T ss_pred CCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHH
Confidence 489999999999999999999999999999988877776664 5 98888877777766543322111
Q ss_pred ----------------------------HHHHH----H--------------------HH----HHHHH-hhhhHHhh--
Q 047286 414 ----------------------------KNYER----L--------------------HI----NAFCF-FIGSKLVE-- 434 (632)
Q Consensus 414 ----------------------------~~~~~----~--------------------~~----~~~~~-~~g~~~v~-- 434 (632)
..+.+ . .. ..+.+ +.|...+.
T Consensus 274 ~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~ 353 (659)
T TIGR00954 274 EGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKT 353 (659)
T ss_pred HHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 00000 0 00 01111 22332332
Q ss_pred ---cCCcCHHHHHH-HHHH-----HHHHHHHHHHhHHhHHHHHHHHHHHHHHHHccCCCCCC--------CC-CC-----
Q 047286 435 ---HGDATFGEVFK-FLSE-----FGCFWCLESTAVAPNADKAKGSAASIFEILESKPKIDW--------SS-KD----- 491 (632)
Q Consensus 435 ---~g~~s~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~--------~~-~~----- 491 (632)
.|.+|+|.+++ |+.. ....++..+.....+++.+..+.+|++++++.+++... +. .+
T Consensus 354 ~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (659)
T TIGR00954 354 HPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGG 433 (659)
T ss_pred cccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccc
Confidence 27889998776 3322 12234666777778889999999999999875332110 00 00
Q ss_pred --------CCCCCcccccEEEee-----------------------EEEEEecCCCChHHHHHhhhcCCChhh-------
Q 047286 492 --------GMTPSTVRGDIVFEH-----------------------TVALVGENGNGKSTVISLAERFHNPEQ------- 533 (632)
Q Consensus 492 --------~~~~~~~~g~I~f~~-----------------------~vaIVG~SGsGKSTL~~ll~r~y~~~~------- 533 (632)
........+.|+|+| ++||+||||||||||+++|.|+|+|++
T Consensus 434 ~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~ 513 (659)
T TIGR00954 434 RNSNLVPGRGIVEYQDNGIKFENIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA 513 (659)
T ss_pred ccccccccccccccCCCeEEEEeeEEECCCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC
Confidence 000000112233332 799999999999999999999987732
Q ss_pred ---------------------hcH-------------HHH------HHHHHHHHhcCCCccCcccccCCCCCChHHHHHH
Q 047286 534 ---------------------VIY-------------SWI------IIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRI 573 (632)
Q Consensus 534 ---------------------~~~-------------~~~------~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRi 573 (632)
+.. ... ..++++++.. |.||||..+ .+.+||||||||+
T Consensus 514 ~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl 591 (659)
T TIGR00954 514 KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQD-WMDVLSGGEKQRI 591 (659)
T ss_pred CCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccc-cccCCCHHHHHHH
Confidence 000 000 1145577766 999999986 5779999999999
Q ss_pred HHHHHHhh---------------------------------hccccchhhhhcCCEEEEEeC
Q 047286 574 ARTRARNY---------------------------------CGCGSPPYHYKNADITSVVKN 602 (632)
Q Consensus 574 aiARA~~~---------------------------------~~iahrl~~~~~aD~I~vl~~ 602 (632)
+||||+++ +++|||+++++.||+|++|++
T Consensus 592 ~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 592 AMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEeCchHHHHhCCEEEEEeC
Confidence 99999665 789999999999999999974
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.6e-26 Score=247.19 Aligned_cols=154 Identities=21% Similarity=0.305 Sum_probs=110.4
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHHh--h--cceEEEcccCccccc-ccccccccccCCCC------
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAE--Q--EKIGLVSKEPIFLFC-DFNEGQYIPYGKQN------ 154 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~~--r--~~i~~v~Q~~~~~~~-~~~~~~~i~~~~~~------ 154 (632)
+++++.+|+.+||||+||||||||||+|.|....+...+ . -+++|++|++..... ++.+ .+..+...
T Consensus 22 ~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~tv~~--~v~~~~~~~~~~~~ 99 (530)
T COG0488 22 VSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEKTVLD--YVIEGFGELRELLA 99 (530)
T ss_pred CcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCccHHH--HHHhhhHHHHHHHH
Confidence 899999999999999999999999999986543333221 1 269999999875432 2221 12111100
Q ss_pred ------------------------------CCHHHHHHHHHHccc---hhhHhhCCccccccc-----------------
Q 047286 155 ------------------------------ASDEHIRPAVQLANA---EKSIDKLPLGLDTVV----------------- 184 (632)
Q Consensus 155 ------------------------------~~~~~~~~~~~~~~l---~~~i~~l~~g~~~~v----------------- 184 (632)
..+.++..++...+. +..+.+||+|.++++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDE 179 (530)
T COG0488 100 ELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDE 179 (530)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 001223333333332 356889999999888
Q ss_pred ccCCCCHHHHHHHHHHHHHHhCCceEEEEecCchHHhh-cCeEEEEeCCeEEE-ecChhHH
Q 047286 185 ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRN-ADCIIMVSKGKIVE-KGTHDEL 243 (632)
Q Consensus 185 ~ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~-aD~i~vl~~G~i~~-~g~~~el 243 (632)
+|+.||..+..-+.+.|.++ ++ |+|+||||-..+.. |++|+-+++|++.. .|.++..
T Consensus 180 PTNHLD~~~i~WLe~~L~~~-~g-tviiVSHDR~FLd~V~t~I~~ld~g~l~~y~Gny~~~ 238 (530)
T COG0488 180 PTNHLDLESIEWLEDYLKRY-PG-TVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYSSY 238 (530)
T ss_pred CCcccCHHHHHHHHHHHHhC-CC-cEEEEeCCHHHHHHHhhheEEecCCceeEecCCHHHH
Confidence 39999999999999999875 34 99999999999977 99999999998864 4554443
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-25 Score=251.87 Aligned_cols=228 Identities=16% Similarity=0.113 Sum_probs=177.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------------------------------------
Q 047286 3 ACLPAIVIAGGITATVVAKLSCRGQIAYAEAEMLLSTQLEP--------------------------------------- 43 (632)
Q Consensus 3 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~--------------------------------------- 43 (632)
+++|+++++..++.++..+...+.++..+++++.+.|.+.|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (555)
T TIGR01194 160 SAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFIA 239 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 34566666666677778888888999999999999999943
Q ss_pred ----------------------CCcccHHHH-----------------HHHHHHHHHHHHHHHHHHHHhcc---CCCC--
Q 047286 44 ----------------------LEDMPLGQT-----------------SLNVNAFAAGQAAACKMFETIER---IPKI-- 79 (632)
Q Consensus 44 ----------------------~~~~~~~~~-----------------~~~~~~~~~~~~a~~ri~~~~~~---~~~~-- 79 (632)
.+.+++|.+ +..++.++++++|++|+.++++. +++.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~ 319 (555)
T TIGR01194 240 AENFGQLLFFLLIGCALFAAAMFASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELE 319 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc
Confidence 123344432 34467899999999999999742 1000
Q ss_pred ----------C--C-------------C-C---------CcEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCc---
Q 047286 80 ----------N--P-------------Y-D---------NRFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAP--- 121 (632)
Q Consensus 80 ----------~--~-------------~-~---------~~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~--- 121 (632)
. . + + +.+||++++|++++|+||||||||||+++|.+ +++|
T Consensus 320 ~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g--~~~p~~G 397 (555)
T TIGR01194 320 LSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCG--LYIPQEG 397 (555)
T ss_pred ccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhC--CCCCCCc
Confidence 0 0 0 0 12889999999999999999999999999984 3332
Q ss_pred --------------HHhhcceEEEcccCcccccccccccccccCCCCCCHHHHHHHHHHccchhhHhhCCccccccc---
Q 047286 122 --------------EAEQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV--- 184 (632)
Q Consensus 122 --------------~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~~~v--- 184 (632)
..+|+.++||+|++.+|.+++.+| . .++.+++++.++++.+++++++..+|+|++|..
T Consensus 398 ~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n--~---~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LS 472 (555)
T TIGR01194 398 EILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPD--E---GEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALS 472 (555)
T ss_pred EEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhcc--c---ccchhHHHHHHHHHHcCCchhhcccccccCCcccCC
Confidence 346788999999999999998874 2 234578889999999999999988888776533
Q ss_pred ------------------------ccCCCCHHHHHHHHHHHH-HH-hCCceEEEEecCchHHhhcCeEEEEeCCeEEEe
Q 047286 185 ------------------------ATNAVDAQSERIVQAAMV-KL-VTNQTVVIVANCLITIRNADCIIMVSKGKIVEK 237 (632)
Q Consensus 185 ------------------------~ts~LD~~~~~~i~~~l~-~~-~~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~ 237 (632)
+|++||+++++.+.+.+. .+ .+++|+|+|||+++.++.||+|++|++|++++.
T Consensus 473 gGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 473 TGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 399999999999988764 44 358999999999999999999999999999875
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-25 Score=252.18 Aligned_cols=229 Identities=19% Similarity=0.180 Sum_probs=176.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------------------------------------
Q 047286 3 ACLPAIVIAGGITATVVAKLSCRGQIAYAEAEMLLSTQLEP--------------------------------------- 43 (632)
Q Consensus 3 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~--------------------------------------- 43 (632)
+++|+++++..++.++.++..++.++..++.++.+.|.+.|
T Consensus 155 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (547)
T PRK10522 155 IWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELTLNRERAEYVFENEYEPDAQEYRHHIIRADTFHLS 234 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhccHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHH
Confidence 45667677777888888888888899999999988888843
Q ss_pred ----------------------C--Ccc---------------cHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC----
Q 047286 44 ----------------------L--EDM---------------PLGQTSLNVNAFAAGQAAACKMFETIERIPKIN---- 80 (632)
Q Consensus 44 ----------------------~--~~~---------------~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~---- 80 (632)
. +.. |+.++...+..++.++.+++|+.++++.+++.+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~~~~ 314 (547)
T PRK10522 235 AVNWSNIMMLGAIGLVFYMANSLGWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEFPRP 314 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccc
Confidence 0 000 111223345678999999999999875332110
Q ss_pred ---C-------------C-C-----CcEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCC---------------CCcHH
Q 047286 81 ---P-------------Y-D-----NRFLQHVPSGTTVALVGQSGSGKSTVINLVESFRF---------------YAPEA 123 (632)
Q Consensus 81 ---~-------------~-~-----~~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~---------------~~~~~ 123 (632)
+ + + +.+||++++|++++|+||||||||||+++|+|+.. .++..
T Consensus 315 ~~~~~~~~i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~ 394 (547)
T PRK10522 315 QAFPDWQTLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPED 394 (547)
T ss_pred cccCcCceEEEEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHH
Confidence 0 0 0 02899999999999999999999999999985421 12234
Q ss_pred hhcceEEEcccCcccccccccccccccCCCCCCHHHHHHHHHHccchhhH---------hhCCcccccccc---------
Q 047286 124 EQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSI---------DKLPLGLDTVVA--------- 185 (632)
Q Consensus 124 ~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~i---------~~l~~g~~~~v~--------- 185 (632)
+|++++||+|++.+|.+++.+| + ...+++++.++++.+++.+++ ..||+|++++++
T Consensus 395 ~~~~i~~v~q~~~lf~~ti~~n-----~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~ 468 (547)
T PRK10522 395 YRKLFSAVFTDFHLFDQLLGPE-----G-KPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEER 468 (547)
T ss_pred HhhheEEEecChhHHHHhhccc-----c-CchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 7889999999999999998773 1 235677888888888876654 268888888873
Q ss_pred --------cCCCCHHHHHHHHHHHHHHh--CCceEEEEecCchHHhhcCeEEEEeCCeEEEe
Q 047286 186 --------TNAVDAQSERIVQAAMVKLV--TNQTVVIVANCLITIRNADCIIMVSKGKIVEK 237 (632)
Q Consensus 186 --------ts~LD~~~~~~i~~~l~~~~--~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~ 237 (632)
|++||+++++.+.+.+.+.. +++|+|+|||+++.++.||+|++|++|++++.
T Consensus 469 ~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 469 DILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999987653 47999999999999999999999999999976
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-25 Score=213.74 Aligned_cols=169 Identities=22% Similarity=0.357 Sum_probs=134.4
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC------------------cHHhhcceEEEcccCcccccccccccc
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA------------------PEAEQEKIGLVSKEPIFLFCDFNEGQY 147 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~------------------~~~~r~~i~~v~Q~~~~~~~~~~~~~~ 147 (632)
++|+|++||+++|+||||||||||+|+|.|+...+ ..++|+++|+++|...+| .+++..+|
T Consensus 27 v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALF-ssltV~eN 105 (263)
T COG1127 27 VDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALF-SSLTVFEN 105 (263)
T ss_pred ceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccc-cccchhHh
Confidence 99999999999999999999999999998653322 113688999999998765 45666668
Q ss_pred cccCCC---CCCHHHHHH----HHHHccchh-----hHhhCCcccccccc-----------------cCCCCHHHHHHHH
Q 047286 148 IPYGKQ---NASDEHIRP----AVQLANAEK-----SIDKLPLGLDTVVA-----------------TNAVDAQSERIVQ 198 (632)
Q Consensus 148 i~~~~~---~~~~~~~~~----~~~~~~l~~-----~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~ 198 (632)
+.|... ..+++.+++ -++.+++.. +..+|++|+..+++ |+||||.+...+.
T Consensus 106 Vafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~ 185 (263)
T COG1127 106 VAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVID 185 (263)
T ss_pred hheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHH
Confidence 887532 234444444 345666543 45678899988874 9999999999999
Q ss_pred HHHHHHhC--CceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcCCCcHHHHHH
Q 047286 199 AAMVKLVT--NQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLV 255 (632)
Q Consensus 199 ~~l~~~~~--~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~ 255 (632)
++|+++++ +.|+++||||+..+.. |||++++.+|+|+.+|+++|+.+.++...+++.
T Consensus 186 ~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~sd~P~v~qf~ 245 (263)
T COG1127 186 ELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLASDDPWVRQFF 245 (263)
T ss_pred HHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHhCCCHHHHHHh
Confidence 99999865 7899999999988865 999999999999999999999887544444443
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-25 Score=220.31 Aligned_cols=161 Identities=26% Similarity=0.399 Sum_probs=128.4
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCC---------------CCcHHhhcceEEEcccCcccccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRF---------------YAPEAEQEKIGLVSKEPIFLFCDFNEGQYIP 149 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~---------------~~~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~ 149 (632)
.+||++++|++++|+||||||||||+|+|.++.. +.+.++.++++||||++.. ...++..+.+.
T Consensus 20 ~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~-~~~~tV~d~V~ 98 (258)
T COG1120 20 DLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSA-PFGLTVYELVL 98 (258)
T ss_pred cceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCC-CCCcEEeehHh
Confidence 3999999999999999999999999999986432 2234467889999999742 33333333555
Q ss_pred cCCC----------CCCHHHHHHHHHHccchh----hHhhCCccccccc-----------------ccCCCCHHHHHHHH
Q 047286 150 YGKQ----------NASDEHIRPAVQLANAEK----SIDKLPLGLDTVV-----------------ATNAVDAQSERIVQ 198 (632)
Q Consensus 150 ~~~~----------~~~~~~~~~~~~~~~l~~----~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~ 198 (632)
+|+. ..+.+.+.++++.+++.+ .+.+||+|.++++ +|++||...+.+++
T Consensus 99 ~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl 178 (258)
T COG1120 99 LGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVL 178 (258)
T ss_pred hcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHH
Confidence 5532 122345778888888654 4778999998887 39999999999999
Q ss_pred HHHHHHhC--CceEEEEecCchHH-hhcCeEEEEeCCeEEEecChhHHhcC
Q 047286 199 AAMVKLVT--NQTVVIVANCLITI-RNADCIIMVSKGKIVEKGTHDELIED 246 (632)
Q Consensus 199 ~~l~~~~~--~~tviiitH~~~~~-~~aD~i~vl~~G~i~~~g~~~el~~~ 246 (632)
+.++++.+ +.|+|++.||++.+ ++||++++|++|+++.+|+++|++..
T Consensus 179 ~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT~ 229 (258)
T COG1120 179 ELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTE 229 (258)
T ss_pred HHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcCH
Confidence 99999963 68999999999766 56999999999999999999998753
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-25 Score=228.64 Aligned_cols=167 Identities=23% Similarity=0.356 Sum_probs=136.9
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCc-------------HHhhcceEEEcccCcccccccccccccccC
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAP-------------EAEQEKIGLVSKEPIFLFCDFNEGQYIPYG 151 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~-------------~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~ 151 (632)
++||+|++||+++++|||||||||||++|.|+...+. ...++.||+|+|+..+| +.++..+|+.||
T Consensus 23 ~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALF-PHltV~~NVafG 101 (352)
T COG3842 23 DISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALF-PHMTVEENVAFG 101 (352)
T ss_pred cceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccC-CCCcHHHHhhhh
Confidence 3999999999999999999999999999996643221 12478899999998765 466666699998
Q ss_pred CC-C--CC----HHHHHHHHHHccchhh----HhhCCcccccccc-----------------cCCCCHHHHHHHHHHHHH
Q 047286 152 KQ-N--AS----DEHIRPAVQLANAEKS----IDKLPLGLDTVVA-----------------TNAVDAQSERIVQAAMVK 203 (632)
Q Consensus 152 ~~-~--~~----~~~~~~~~~~~~l~~~----i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~~l~~ 203 (632)
.+ . .. .+++.++++.+++.++ ..+|++|++++|+ .|+||.+-+.+++..+++
T Consensus 102 Lk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~ 181 (352)
T COG3842 102 LKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKE 181 (352)
T ss_pred hhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHH
Confidence 65 1 12 2467888888887654 5678889999884 799999999999999988
Q ss_pred HhC--CceEEEEecCchHH-hhcCeEEEEeCCeEEEecChhHHhcCCCcHHH
Q 047286 204 LVT--NQTVVIVANCLITI-RNADCIIMVSKGKIVEKGTHDELIEDPEGAYS 252 (632)
Q Consensus 204 ~~~--~~tviiitH~~~~~-~~aD~i~vl~~G~i~~~g~~~el~~~~~~~~~ 252 (632)
+.+ |.|.|+||||.+++ ..+|||++|++|+|...|+++|+...|.+.|.
T Consensus 182 lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P~~~fV 233 (352)
T COG3842 182 LQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERPATRFV 233 (352)
T ss_pred HHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCcchHHH
Confidence 753 78999999998765 56999999999999999999999988766553
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-24 Score=220.27 Aligned_cols=169 Identities=16% Similarity=0.300 Sum_probs=140.1
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCC--------------CCcHHhhcceEEEcccCccccccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRF--------------YAPEAEQEKIGLVSKEPIFLFCDFNEGQYIPY 150 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~--------------~~~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~ 150 (632)
.+||+|++||+++|+||||||||||+++|.|+.. ++...+|+.++|+||++.+|..++.+ |+..
T Consensus 22 ~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~tv~~--nl~~ 99 (275)
T cd03289 22 NISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRK--NLDP 99 (275)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchhhHHH--Hhhh
Confidence 4999999999999999999999999999986532 11234577899999999999887776 5642
Q ss_pred CCCCCCHHHHHHHHHHccchhhHhhCCccccccc--------------------------------ccCCCCHHHHHHHH
Q 047286 151 GKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV--------------------------------ATNAVDAQSERIVQ 198 (632)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~~~v--------------------------------~ts~LD~~~~~~i~ 198 (632)
.. ..+++++.++++.+++.+.+..+|.++++.+ +|++||+.+++.+.
T Consensus 100 ~~-~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~ 178 (275)
T cd03289 100 YG-KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIR 178 (275)
T ss_pred cc-CCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHH
Confidence 21 2456788899999999988888777655543 28999999999999
Q ss_pred HHHHHHhCCceEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHhcCCCcHHHHHHHH
Q 047286 199 AAMVKLVTNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRL 257 (632)
Q Consensus 199 ~~l~~~~~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~~ 257 (632)
+.|++..+++|+|+|||+++.+..||||++|++|++++.|+++++... ...|.++...
T Consensus 179 ~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~-~~~~~~~~~~ 236 (275)
T cd03289 179 KTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNE-KSHFKQAISP 236 (275)
T ss_pred HHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhC-cHHHHHHHhh
Confidence 999988778999999999999888999999999999999999999885 4556666544
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.5e-25 Score=224.02 Aligned_cols=133 Identities=20% Similarity=0.169 Sum_probs=111.3
Q ss_pred CcccccEEEeeEEEEEecCCCChHHHHHhhhcCCChhh-----------h------------------------------
Q 047286 496 STVRGDIVFEHTVALVGENGNGKSTVISLAERFHNPEQ-----------V------------------------------ 534 (632)
Q Consensus 496 ~~~~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~-----------~------------------------------ 534 (632)
.++.-+|.-++++|||||||||||||+++|+|+++++. +
T Consensus 21 ~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~tv~~nl~~~ 100 (275)
T cd03289 21 ENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPY 100 (275)
T ss_pred eceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchhhHHHHhhhc
Confidence 34444666677999999999999999999999976311 0
Q ss_pred --------cHHHHHHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh-------------------------
Q 047286 535 --------IYSWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY------------------------- 581 (632)
Q Consensus 535 --------~~~~~~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~------------------------- 581 (632)
+......++.+++..+|++|||.++|+|.+||||||||+|||||+++
T Consensus 101 ~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~ 180 (275)
T cd03289 101 GKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKT 180 (275)
T ss_pred cCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHH
Confidence 00000114567899999999999999999999999999999999665
Q ss_pred ----------hccccchhhhhcCCEEEEEeCCeEeeecChHHHhccCCchhHHHHHhh
Q 047286 582 ----------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKITDGTYASLTALH 629 (632)
Q Consensus 582 ----------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~~~~ 629 (632)
+++||++++++.||+|+||++|+|+|.|++++|+++ ++.|++++...
T Consensus 181 l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~-~~~~~~~~~~~ 237 (275)
T cd03289 181 LKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNE-KSHFKQAISPS 237 (275)
T ss_pred HHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhC-cHHHHHHHhhc
Confidence 788999999999999999999999999999999997 78889888653
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-23 Score=222.33 Aligned_cols=154 Identities=18% Similarity=0.292 Sum_probs=119.5
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCC---------------CCcHH-hhcceEEEcccCccccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRF---------------YAPEA-EQEKIGLVSKEPIFLFCDFNEGQYI 148 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~---------------~~~~~-~r~~i~~v~Q~~~~~~~~~~~~~~i 148 (632)
.+||++.+||++||+|.||||||||+|+|+|.-. ..|.+ ....|+.|+||..+++ .++..+|+
T Consensus 26 ~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p-~LsVaeNi 104 (500)
T COG1129 26 GVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVP-NLSVAENI 104 (500)
T ss_pred cceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccC-CccHHHHh
Confidence 3999999999999999999999999999985421 12222 3457999999997653 44545577
Q ss_pred ccCCCCC------CH----HHHHHHHHHcc----chhhHhhCCccccccc-----------------ccCCCCHHHHHHH
Q 047286 149 PYGKQNA------SD----EHIRPAVQLAN----AEKSIDKLPLGLDTVV-----------------ATNAVDAQSERIV 197 (632)
Q Consensus 149 ~~~~~~~------~~----~~~~~~~~~~~----l~~~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i 197 (632)
-+++... +. ++.+++++..+ .+..+.+||.+.++.| +|++|+....+.+
T Consensus 105 fLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~L 184 (500)
T COG1129 105 FLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERL 184 (500)
T ss_pred hcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 6665321 22 33445555444 4556778888888777 3999999999999
Q ss_pred HHHHHHHh-CCceEEEEecCchHHhh-cCeEEEEeCCeEEEecC
Q 047286 198 QAAMVKLV-TNQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGT 239 (632)
Q Consensus 198 ~~~l~~~~-~~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~ 239 (632)
.+.+++++ +|.++|+|||+++++.. ||||.||.+|+.+...+
T Consensus 185 f~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 185 FDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred HHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence 99999997 58899999999998865 99999999999988765
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-24 Score=207.75 Aligned_cols=168 Identities=23% Similarity=0.380 Sum_probs=131.8
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC------------c----HHhhcceEEEcccCccccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA------------P----EAEQEKIGLVSKEPIFLFCDFNEGQYI 148 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~------------~----~~~r~~i~~v~Q~~~~~~~~~~~~~~i 148 (632)
.+||+|.+||+++|+|+||||||||.++|.|+.... + ...++.+.+|||+|. +++....++
T Consensus 25 ~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~---~SLnP~~tv 101 (252)
T COG1124 25 NVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPY---SSLNPRRTV 101 (252)
T ss_pred ceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCc---cccCcchhH
Confidence 499999999999999999999999999998653211 1 124678999999995 222221111
Q ss_pred ----c----cCCCCCCHHHHHHHHHHccch-----hhHhhCCcccccccc-----------------cCCCCHHHHHHHH
Q 047286 149 ----P----YGKQNASDEHIRPAVQLANAE-----KSIDKLPLGLDTVVA-----------------TNAVDAQSERIVQ 198 (632)
Q Consensus 149 ----~----~~~~~~~~~~~~~~~~~~~l~-----~~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~ 198 (632)
. ........+++.++++.+++. ++..+|++|..++|+ ||+||+..+.+++
T Consensus 102 ~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~Il 181 (252)
T COG1124 102 GRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQIL 181 (252)
T ss_pred HHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHH
Confidence 1 111122345688899988864 455678899998884 9999999999999
Q ss_pred HHHHHHhCC--ceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcCCCcHHHHHH
Q 047286 199 AAMVKLVTN--QTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLV 255 (632)
Q Consensus 199 ~~l~~~~~~--~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~ 255 (632)
+.+.+++++ -|.++||||+..+.+ ||||+||++|+++|.++.+++...+...|.+..
T Consensus 182 nlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~~~h~ytr~L 241 (252)
T COG1124 182 NLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSHPSHPYTREL 241 (252)
T ss_pred HHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcCCccHHHHHH
Confidence 999999764 599999999999987 999999999999999999999887777776543
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-24 Score=195.88 Aligned_cols=160 Identities=26% Similarity=0.406 Sum_probs=131.6
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcH-------------HhhcceEEEcccCcccccccccccccccCC
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPE-------------AEQEKIGLVSKEPIFLFCDFNEGQYIPYGK 152 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~-------------~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~ 152 (632)
++++|+.||++||+||||||||||+|+|.|+...... ...+-+++++||..+| ..++...|+.+|.
T Consensus 18 fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLF-aHLtV~qNigLGl 96 (231)
T COG3840 18 FDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLF-AHLTVAQNIGLGL 96 (231)
T ss_pred EEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccc-hhhhhhhhhcccC
Confidence 8889999999999999999999999999966432211 1356799999999866 4555556888875
Q ss_pred CC------CCHHHHHHHHHHccchhhHhhCC----cccccccc-----------------cCCCCHHHHHHHHHHHHHHh
Q 047286 153 QN------ASDEHIRPAVQLANAEKSIDKLP----LGLDTVVA-----------------TNAVDAQSERIVQAAMVKLV 205 (632)
Q Consensus 153 ~~------~~~~~~~~~~~~~~l~~~i~~l~----~g~~~~v~-----------------ts~LD~~~~~~i~~~l~~~~ 205 (632)
.. ...++++.++..+++..+.+++| +|.+++++ +|+|||.-+.++...+.++.
T Consensus 97 ~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~ 176 (231)
T COG3840 97 SPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLC 176 (231)
T ss_pred CcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHH
Confidence 31 24567888889999988877666 57777774 89999999999999999986
Q ss_pred C--CceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcC
Q 047286 206 T--NQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIED 246 (632)
Q Consensus 206 ~--~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~ 246 (632)
. +.|++||||+++.+.. +|+++++++|+|.++|+.+++...
T Consensus 177 ~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~ 220 (231)
T COG3840 177 DERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSG 220 (231)
T ss_pred HhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhcc
Confidence 3 6799999999998876 999999999999999999998764
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-24 Score=209.21 Aligned_cols=150 Identities=25% Similarity=0.331 Sum_probs=118.6
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCc------------------HH-hhcceEEEcccCcccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAP------------------EA-EQEKIGLVSKEPIFLFCDFNEG 145 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~------------------~~-~r~~i~~v~Q~~~~~~~~~~~~ 145 (632)
.+||+|++||+++|+|||||||||||++|.++...+. .. .+++||||+|+..++ ..++..
T Consensus 23 ~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl-~~ltv~ 101 (226)
T COG1136 23 DVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLL-PDLTVL 101 (226)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCC-CCCCHH
Confidence 4999999999999999999999999999976532211 01 356799999998754 345555
Q ss_pred ccccc----CCCC--CCHHHHHHHHHHccch-----hhHhhCCcccccccc-----------------cCCCCHHHHHHH
Q 047286 146 QYIPY----GKQN--ASDEHIRPAVQLANAE-----KSIDKLPLGLDTVVA-----------------TNAVDAQSERIV 197 (632)
Q Consensus 146 ~~i~~----~~~~--~~~~~~~~~~~~~~l~-----~~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i 197 (632)
+|+.+ .... ...++..+.++..++. ++..+||+|.+++|+ |++||.++.+.+
T Consensus 102 ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V 181 (226)
T COG1136 102 ENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEV 181 (226)
T ss_pred HHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHH
Confidence 57763 2111 1245566777777776 446688999999984 999999999999
Q ss_pred HHHHHHHhC--CceEEEEecCchHHhhcCeEEEEeCCeEE
Q 047286 198 QAAMVKLVT--NQTVVIVANCLITIRNADCIIMVSKGKIV 235 (632)
Q Consensus 198 ~~~l~~~~~--~~tviiitH~~~~~~~aD~i~vl~~G~i~ 235 (632)
++.++++.+ ++|+|+||||...+..|||++.|++|++.
T Consensus 182 ~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~ 221 (226)
T COG1136 182 LELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIE 221 (226)
T ss_pred HHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence 999999853 78999999999999999999999999954
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-24 Score=221.45 Aligned_cols=167 Identities=23% Similarity=0.350 Sum_probs=136.2
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCc-------------HHhhcceEEEcccCcccccccccccccccC
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAP-------------EAEQEKIGLVSKEPIFLFCDFNEGQYIPYG 151 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~-------------~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~ 151 (632)
.+|++|++||+++|+|||||||||||++|.|+...+. ...++.|++|||+..+| ..++..+|+.|+
T Consensus 21 ~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALy-PhmtV~~Niaf~ 99 (338)
T COG3839 21 DVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALY-PHMTVYENIAFG 99 (338)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCcccc-CCCcHHHHhhhh
Confidence 3999999999999999999999999999997643211 12468899999998765 455555689988
Q ss_pred CCC------CCHHHHHHHHHHccchhhHh----hCCcccccccc-----------------cCCCCHHHHHHHHHHHHHH
Q 047286 152 KQN------ASDEHIRPAVQLANAEKSID----KLPLGLDTVVA-----------------TNAVDAQSERIVQAAMVKL 204 (632)
Q Consensus 152 ~~~------~~~~~~~~~~~~~~l~~~i~----~l~~g~~~~v~-----------------ts~LD~~~~~~i~~~l~~~ 204 (632)
.+. ..+++++++++..++++.++ +||+|++++|+ .|+||++.+..+...|+++
T Consensus 100 Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~l 179 (338)
T COG3839 100 LKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKL 179 (338)
T ss_pred hhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHH
Confidence 543 23567788888888776654 56788888884 7999999999999999998
Q ss_pred hC--CceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhcCCCcHHH
Q 047286 205 VT--NQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIEDPEGAYS 252 (632)
Q Consensus 205 ~~--~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~~~~~~~~ 252 (632)
.+ +.|+|+||||..++. .+|||++|++|+|.+.|++.|+...|.+.|.
T Consensus 180 h~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~n~fV 230 (338)
T COG3839 180 HERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPANLFV 230 (338)
T ss_pred HHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCccchhh
Confidence 64 679999999987765 5999999999999999999999988766553
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=8e-24 Score=219.77 Aligned_cols=151 Identities=21% Similarity=0.361 Sum_probs=123.2
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcH------------------HhhcceEEEcccCccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPE------------------AEQEKIGLVSKEPIFLFCDFNEGQ 146 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~------------------~~r~~i~~v~Q~~~~~~~~~~~~~ 146 (632)
.+||+|++||+.||+|+||+|||||+++|.|+ |.|+ ..+..||+|.|.+.+ ..+++..+
T Consensus 22 ~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~--~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~L-v~~lTV~E 98 (501)
T COG3845 22 DVSLSVKKGEIHALLGENGAGKSTLMKILFGL--YQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFML-VPTLTVAE 98 (501)
T ss_pred ceeeeecCCcEEEEeccCCCCHHHHHHHHhCc--ccCCcceEEECCEEeccCCHHHHHHcCCcEEeecccc-ccccchhh
Confidence 49999999999999999999999999999844 3332 257789999999865 45666666
Q ss_pred ccccCCCCC-----C----HHHHHHHHHHccc----hhhHhhCCccccccc-----------------ccCCCCHHHHHH
Q 047286 147 YIPYGKQNA-----S----DEHIRPAVQLANA----EKSIDKLPLGLDTVV-----------------ATNAVDAQSERI 196 (632)
Q Consensus 147 ~i~~~~~~~-----~----~~~~~~~~~~~~l----~~~i~~l~~g~~~~v-----------------~ts~LD~~~~~~ 196 (632)
|+.++.... + .+++.+..+..++ +..+..||-|.+++| +|+-|-|...++
T Consensus 99 NiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~ 178 (501)
T COG3845 99 NIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADE 178 (501)
T ss_pred hhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 888876421 2 3456666666654 566889999999888 499999999999
Q ss_pred HHHHHHHHh-CCceEEEEecCchHHhh-cCeEEEEeCCeEEEec
Q 047286 197 VQAAMVKLV-TNQTVVIVANCLITIRN-ADCIIMVSKGKIVEKG 238 (632)
Q Consensus 197 i~~~l~~~~-~~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g 238 (632)
+++.+++++ +|+|||+|||.+.++.. |||+.||.+|+++..-
T Consensus 179 lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~ 222 (501)
T COG3845 179 LFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTV 222 (501)
T ss_pred HHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeee
Confidence 999999986 58999999999998876 9999999999986543
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-24 Score=211.48 Aligned_cols=160 Identities=27% Similarity=0.424 Sum_probs=132.6
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC----------------CcHHhhcceEEEcccC--ccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY----------------APEAEQEKIGLVSKEP--IFLFCDFNEGQ 146 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~----------------~~~~~r~~i~~v~Q~~--~~~~~~~~~~~ 146 (632)
.+|+++++|+.++|+|+||||||||++++.|+... ...++|+++|||+|+| .+|..++.+
T Consensus 22 ~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~-- 99 (235)
T COG1122 22 DVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVED-- 99 (235)
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHH--
Confidence 38999999999999999999999999999865321 1334688999999999 456666655
Q ss_pred ccccCCCC--CC----HHHHHHHHHHccch----hhHhhCCcccccccc-----------------cCCCCHHHHHHHHH
Q 047286 147 YIPYGKQN--AS----DEHIRPAVQLANAE----KSIDKLPLGLDTVVA-----------------TNAVDAQSERIVQA 199 (632)
Q Consensus 147 ~i~~~~~~--~~----~~~~~~~~~~~~l~----~~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~ 199 (632)
.+.|+..+ .+ ++++.++++.+++. +....||+|..++++ |++||+..++.+++
T Consensus 100 evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~ 179 (235)
T COG1122 100 EVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLE 179 (235)
T ss_pred HHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHH
Confidence 47777543 22 34567788888875 556788999999884 99999999999999
Q ss_pred HHHHHhC--CceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcC
Q 047286 200 AMVKLVT--NQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIED 246 (632)
Q Consensus 200 ~l~~~~~--~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~ 246 (632)
.++++.+ ++|+|++||+++.+.. ||++++|++|+++.+|++.++.++
T Consensus 180 ~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 180 LLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred HHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 9999964 4799999999999876 999999999999999999998764
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-24 Score=211.67 Aligned_cols=166 Identities=23% Similarity=0.352 Sum_probs=134.3
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCc-------------H---HhhcceEEEcccCccccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAP-------------E---AEQEKIGLVSKEPIFLFCDFNEGQYI 148 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~-------------~---~~r~~i~~v~Q~~~~~~~~~~~~~~i 148 (632)
+++++|+.||.+|+.|||||||||||++|.|+...+. . .-.++||+|+|+..+| ..++..+||
T Consensus 20 di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF-~HmtVa~NI 98 (345)
T COG1118 20 DISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALF-PHMTVADNI 98 (345)
T ss_pred cceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhc-ccchHHhhh
Confidence 4999999999999999999999999999987643221 1 1246799999998765 455556699
Q ss_pred ccCCCC--------CCHHHHHHHHHHccchhh----HhhCCcccccccc-----------------cCCCCHHHHHHHHH
Q 047286 149 PYGKQN--------ASDEHIRPAVQLANAEKS----IDKLPLGLDTVVA-----------------TNAVDAQSERIVQA 199 (632)
Q Consensus 149 ~~~~~~--------~~~~~~~~~~~~~~l~~~----i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~ 199 (632)
.||.+. ..+.++.+.++.++++.. ..+|++|+.++|+ +++||++.++++..
T Consensus 99 AFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~ 178 (345)
T COG1118 99 AFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRR 178 (345)
T ss_pred hhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHH
Confidence 998621 234567777888877654 5567788888884 78999999999999
Q ss_pred HHHHHhC--CceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhcCCCcHH
Q 047286 200 AMVKLVT--NQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIEDPEGAY 251 (632)
Q Consensus 200 ~l~~~~~--~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~~~~~~~ 251 (632)
-|+++.. +.|+++||||.+++. .||||++|++|+|...|+++|+...|+..|
T Consensus 179 wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~~P~s~f 233 (345)
T COG1118 179 WLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHPASRF 233 (345)
T ss_pred HHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhcCCCccc
Confidence 9999854 789999999998775 599999999999999999999988776654
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-24 Score=212.75 Aligned_cols=166 Identities=26% Similarity=0.399 Sum_probs=135.6
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHH---------------------hhcceEEEcccCcccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEA---------------------EQEKIGLVSKEPIFLFCDFN 143 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~---------------------~r~~i~~v~Q~~~~~~~~~~ 143 (632)
++||+|+.||++.|.|-||||||||++++. +..+|.. .|+++++|||+..+++ ..+
T Consensus 46 ~~sl~v~~GeIfViMGLSGSGKSTLvR~~N--rLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlP-hrt 122 (386)
T COG4175 46 DASLDVEEGEIFVIMGLSGSGKSTLVRLLN--RLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLP-HRT 122 (386)
T ss_pred cceeeecCCeEEEEEecCCCCHHHHHHHHh--ccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhcccc-chh
Confidence 499999999999999999999999999998 4443321 3568999999987654 334
Q ss_pred cccccccCCCC------CCHHHHHHHHHHccchhh----HhhCCcccccccc-----------------cCCCCHHHHHH
Q 047286 144 EGQYIPYGKQN------ASDEHIRPAVQLANAEKS----IDKLPLGLDTVVA-----------------TNAVDAQSERI 196 (632)
Q Consensus 144 ~~~~i~~~~~~------~~~~~~~~~~~~~~l~~~----i~~l~~g~~~~v~-----------------ts~LD~~~~~~ 196 (632)
..+|..||.+- ...++..++++.++++.+ ..+|++|++++|+ +|+|||--+.+
T Consensus 123 Vl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~ 202 (386)
T COG4175 123 VLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTE 202 (386)
T ss_pred HhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHH
Confidence 44488887531 224556778888988755 5667789999983 89999999999
Q ss_pred HHHHHHHHhC--CceEEEEecCchHH-hhcCeEEEEeCCeEEEecChhHHhcCCCcHHHH
Q 047286 197 VQAAMVKLVT--NQTVVIVANCLITI-RNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQ 253 (632)
Q Consensus 197 i~~~l~~~~~--~~tviiitH~~~~~-~~aD~i~vl~~G~i~~~g~~~el~~~~~~~~~~ 253 (632)
+++.|.++.+ ++|+|+||||++++ +..|||.+|++|+|++.||++|+..+|.+.|-.
T Consensus 203 mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ~Gtp~eIl~~PAndYV~ 262 (386)
T COG4175 203 MQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLNPANDYVR 262 (386)
T ss_pred HHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeEEEeCCHHHHHcCccHHHHH
Confidence 9999988853 79999999999776 559999999999999999999999998888764
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.2e-24 Score=209.63 Aligned_cols=159 Identities=20% Similarity=0.330 Sum_probs=124.8
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcH----------Hh--hcceEEEcccC---cccccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPE----------AE--QEKIGLVSKEP---IFLFCDFNEGQYIP 149 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~----------~~--r~~i~~v~Q~~---~~~~~~~~~~~~i~ 149 (632)
.+||+|++|++++|+||||||||||+|+|+|+...... .. +.+||||||.. +-|+.++.+ .+.
T Consensus 22 ~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d--~V~ 99 (254)
T COG1121 22 DISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKD--VVL 99 (254)
T ss_pred ccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHH--HHH
Confidence 39999999999999999999999999999975322111 11 25799999965 234444443 344
Q ss_pred cCCC----------CCCHHHHHHHHHHccchh----hHhhCCccccccc-----------------ccCCCCHHHHHHHH
Q 047286 150 YGKQ----------NASDEHIRPAVQLANAEK----SIDKLPLGLDTVV-----------------ATNAVDAQSERIVQ 198 (632)
Q Consensus 150 ~~~~----------~~~~~~~~~~~~~~~l~~----~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~ 198 (632)
++.. ..+.++++++++.+++.+ .+.+||+|+.+++ +++|+|+.++..+.
T Consensus 100 ~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~ 179 (254)
T COG1121 100 LGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIY 179 (254)
T ss_pred ccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHH
Confidence 4321 123578899999998764 4778999999888 38999999999999
Q ss_pred HHHHHHhC-CceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhcC
Q 047286 199 AAMVKLVT-NQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIED 246 (632)
Q Consensus 199 ~~l~~~~~-~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~~ 246 (632)
+.|+++++ |+||++||||++.+. ++|+|++|++ +++..|+++++.+.
T Consensus 180 ~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~-~~~~~G~~~~~~~~ 228 (254)
T COG1121 180 DLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNR-HLIASGPPEEVLTE 228 (254)
T ss_pred HHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcC-eeEeccChhhccCH
Confidence 99999964 899999999998875 5999999954 78899999998754
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3e-24 Score=206.81 Aligned_cols=150 Identities=25% Similarity=0.319 Sum_probs=118.5
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcH----------HhhcceEEEcccCcccccccccccccccCCCC
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPE----------AEQEKIGLVSKEPIFLFCDFNEGQYIPYGKQN 154 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~----------~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~ 154 (632)
++||+|++||+++|+||||||||||+|+|.|+..+... .....++||+|++.+|+ ..+..+|+.++...
T Consensus 21 ~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlP-W~Tv~~NV~l~l~~ 99 (248)
T COG1116 21 DINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLP-WLTVLDNVALGLEL 99 (248)
T ss_pred cceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccc-hhhHHhhheehhhc
Confidence 39999999999999999999999999999976433211 23457999999998654 44444578776432
Q ss_pred C------CHHHHHHHHHHccchhhH----hhCCcccccccc-----------------cCCCCHHHHHHHHHHHHHHh--
Q 047286 155 A------SDEHIRPAVQLANAEKSI----DKLPLGLDTVVA-----------------TNAVDAQSERIVQAAMVKLV-- 205 (632)
Q Consensus 155 ~------~~~~~~~~~~~~~l~~~i----~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~~l~~~~-- 205 (632)
. ..+++.+.++.+++.++- .+||+|++++++ ++|||+.|+..+++.+.++.
T Consensus 100 ~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~ 179 (248)
T COG1116 100 RGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEE 179 (248)
T ss_pred cccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHh
Confidence 1 234678888999886654 566689999884 89999999999999999885
Q ss_pred CCceEEEEecCchHHhh-cCeEEEEeC--CeEE
Q 047286 206 TNQTVVIVANCLITIRN-ADCIIMVSK--GKIV 235 (632)
Q Consensus 206 ~~~tviiitH~~~~~~~-aD~i~vl~~--G~i~ 235 (632)
.++|+++||||.+++-. +|||++|.+ |+|.
T Consensus 180 ~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~ 212 (248)
T COG1116 180 TRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIG 212 (248)
T ss_pred hCCEEEEEeCCHHHHHhhhCEEEEecCCCccee
Confidence 36899999999988755 999999999 5554
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.7e-24 Score=219.31 Aligned_cols=160 Identities=24% Similarity=0.435 Sum_probs=133.6
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC--------------CcHHhhcceEEEcccCccccccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY--------------APEAEQEKIGLVSKEPIFLFCDFNEGQYIPY 150 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~--------------~~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~ 150 (632)
.+||+|++|+++|++||||||||||+|+|+|+... ++.+.++++||+||+|. ++..++..+|+.+
T Consensus 23 ~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~-~~~~lT~~e~l~~ 101 (293)
T COG1131 23 GVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPS-LYPELTVRENLEF 101 (293)
T ss_pred ceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCC-CCccccHHHHHHH
Confidence 39999999999999999999999999999865321 12356789999999997 6667776667655
Q ss_pred CC-----C-CCCHHHHHHHHHHccchh----hHhhCCccccccc-----------------ccCCCCHHHHHHHHHHHHH
Q 047286 151 GK-----Q-NASDEHIRPAVQLANAEK----SIDKLPLGLDTVV-----------------ATNAVDAQSERIVQAAMVK 203 (632)
Q Consensus 151 ~~-----~-~~~~~~~~~~~~~~~l~~----~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l~~ 203 (632)
.. . ....++++++++..++.+ .+..||.|+++++ +|+||||.++..+++.|++
T Consensus 102 ~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~ 181 (293)
T COG1131 102 FARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRE 181 (293)
T ss_pred HHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHH
Confidence 21 1 123567889999988774 4788999999888 3999999999999999999
Q ss_pred HhC-C-ceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhc
Q 047286 204 LVT-N-QTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIE 245 (632)
Q Consensus 204 ~~~-~-~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~ 245 (632)
+.+ + .||+++||.++.+.. ||+|++|++|+++.+|+.+++..
T Consensus 182 l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~ 226 (293)
T COG1131 182 LAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKE 226 (293)
T ss_pred HHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 975 4 699999999999977 99999999999999999998754
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.8e-24 Score=222.53 Aligned_cols=166 Identities=25% Similarity=0.355 Sum_probs=132.6
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC---------------CcHHh----hcceEEEcccCccccc-cccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY---------------APEAE----QEKIGLVSKEPIFLFC-DFNE 144 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~---------------~~~~~----r~~i~~v~Q~~~~~~~-~~~~ 144 (632)
.+||+|++||+++|+||||||||||+++|+|+... ++..+ ++.++||+|++.+|+. ++.+
T Consensus 11 ~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~e 90 (363)
T TIGR01186 11 DADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQ 90 (363)
T ss_pred eeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHH
Confidence 39999999999999999999999999999865321 12223 6789999999988763 6665
Q ss_pred ccccccCCC--CC----CHHHHHHHHHHccchhh----HhhCCcccccccc-----------------cCCCCHHHHHHH
Q 047286 145 GQYIPYGKQ--NA----SDEHIRPAVQLANAEKS----IDKLPLGLDTVVA-----------------TNAVDAQSERIV 197 (632)
Q Consensus 145 ~~~i~~~~~--~~----~~~~~~~~~~~~~l~~~----i~~l~~g~~~~v~-----------------ts~LD~~~~~~i 197 (632)
|+.++.. .. ..+++.++++.++++.+ ..+||+|++++++ |++||+.+++.+
T Consensus 91 --Ni~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l 168 (363)
T TIGR01186 91 --NTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSM 168 (363)
T ss_pred --HHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 6665421 11 23456778888887654 5567889988883 999999999999
Q ss_pred HHHHHHHhC--CceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhcCCCcHHH
Q 047286 198 QAAMVKLVT--NQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIEDPEGAYS 252 (632)
Q Consensus 198 ~~~l~~~~~--~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~~~~~~~~ 252 (632)
++.+.++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++...+...|.
T Consensus 169 ~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~~~~~ 226 (363)
T TIGR01186 169 QDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYV 226 (363)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcccHHH
Confidence 999998853 789999999998764 5999999999999999999999877655554
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.7e-24 Score=221.90 Aligned_cols=165 Identities=21% Similarity=0.380 Sum_probs=131.1
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC---------------cH---HhhcceEEEcccCcccc-cccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA---------------PE---AEQEKIGLVSKEPIFLF-CDFNEG 145 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~---------------~~---~~r~~i~~v~Q~~~~~~-~~~~~~ 145 (632)
.+||+|++||+++|+||||||||||+++|.|+...+ +. ..|++|+|++|++.++. .++.+
T Consensus 23 ~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~e- 101 (343)
T TIGR02314 23 NVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFG- 101 (343)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHH-
Confidence 399999999999999999999999999998653211 11 23678999999987764 35544
Q ss_pred cccccCCC--CCC----HHHHHHHHHHccchh----hHhhCCcccccccc-----------------cCCCCHHHHHHHH
Q 047286 146 QYIPYGKQ--NAS----DEHIRPAVQLANAEK----SIDKLPLGLDTVVA-----------------TNAVDAQSERIVQ 198 (632)
Q Consensus 146 ~~i~~~~~--~~~----~~~~~~~~~~~~l~~----~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~ 198 (632)
|+.++.. ..+ .+++.++++.+++.+ ...+||+|++++++ |++||+.+++.++
T Consensus 102 -ni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~ 180 (343)
T TIGR02314 102 -NVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSIL 180 (343)
T ss_pred -HHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHH
Confidence 6665321 112 345677888888754 45678889988883 9999999999999
Q ss_pred HHHHHHhC--CceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcCCCcHH
Q 047286 199 AAMVKLVT--NQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIEDPEGAY 251 (632)
Q Consensus 199 ~~l~~~~~--~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~~~~~~ 251 (632)
+.|+++.+ +.|+|++||+++.+.. ||+|++|++|++++.|+++++...+...+
T Consensus 181 ~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~~p~~~~ 236 (343)
T TIGR02314 181 ELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHPKTPL 236 (343)
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHcCCCcHH
Confidence 99999854 7899999999999865 99999999999999999999987665444
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.6e-24 Score=220.58 Aligned_cols=162 Identities=19% Similarity=0.342 Sum_probs=131.8
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC-------C---------------cHHhhcceEEEcccCcccccccc
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY-------A---------------PEAEQEKIGLVSKEPIFLFCDFN 143 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~-------~---------------~~~~r~~i~~v~Q~~~~~~~~~~ 143 (632)
+||+|++||+++|+||||||||||+++|.|.... . ...+|+.++|+||+|++|..++.
T Consensus 101 is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~~ti~ 180 (329)
T PRK14257 101 LNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIF 180 (329)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCCCcHH
Confidence 9999999999999999999999999999865321 0 02357789999999999988877
Q ss_pred cccccccCCC--CCCHH-----HHHHHHHHccc--------hhhHhhCCccccccc-----------------ccCCCCH
Q 047286 144 EGQYIPYGKQ--NASDE-----HIRPAVQLANA--------EKSIDKLPLGLDTVV-----------------ATNAVDA 191 (632)
Q Consensus 144 ~~~~i~~~~~--~~~~~-----~~~~~~~~~~l--------~~~i~~l~~g~~~~v-----------------~ts~LD~ 191 (632)
+ |+.++.. ..+++ .+.++++.+++ ++....||+|.++++ +|++||+
T Consensus 181 e--Ni~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~ 258 (329)
T PRK14257 181 D--NVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDP 258 (329)
T ss_pred H--HHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCH
Confidence 6 6765431 12222 24566777765 244566889988877 3999999
Q ss_pred HHHHHHHHHHHHHhCCceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcCCCc
Q 047286 192 QSERIVQAAMVKLVTNQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIEDPEG 249 (632)
Q Consensus 192 ~~~~~i~~~l~~~~~~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~~~~ 249 (632)
.+.+.+.++|+++.+++|+|++||+++.+.. ||||++|++|+|++.|+++++...+..
T Consensus 259 ~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~~~~~ 317 (329)
T PRK14257 259 IATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIHPKN 317 (329)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCCCc
Confidence 9999999999998888999999999999876 999999999999999999999876543
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.6e-23 Score=236.46 Aligned_cols=224 Identities=15% Similarity=0.186 Sum_probs=175.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------------------------------------
Q 047286 2 AACLPAIVIAGGITATVVAKLSCRGQIAYAEAEMLLSTQLEP-------------------------------------- 43 (632)
Q Consensus 2 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-------------------------------------- 43 (632)
++.+|+.+++..++.+.+.+..++.++..++.++.++|.+.|
T Consensus 246 l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~ 325 (659)
T TIGR00954 246 FAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSY 325 (659)
T ss_pred HHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 455788899999999999999999999999999999999943
Q ss_pred ---------------------------C----CcccHHHH---------------------HHHHHHHHHHHHHHHHHHH
Q 047286 44 ---------------------------L----EDMPLGQT---------------------SLNVNAFAAGQAAACKMFE 71 (632)
Q Consensus 44 ---------------------------~----~~~~~~~~---------------------~~~~~~~~~~~~a~~ri~~ 71 (632)
. +.+++|.+ +..+..++++.++++|+++
T Consensus 326 ~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ 405 (659)
T TIGR00954 326 GFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDT 405 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 22333331 2235678999999999999
Q ss_pred HhccCCCC--------------------------------C-C------------C--C----CcEEEEeeCCCEEEEEc
Q 047286 72 TIERIPKI--------------------------------N-P------------Y--D----NRFLQHVPSGTTVALVG 100 (632)
Q Consensus 72 ~~~~~~~~--------------------------------~-~------------~--~----~~~~~~i~~Ge~~~ivG 100 (632)
+++.+++. . . . . ..+||++++||+++|+|
T Consensus 406 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~~~il~~isl~i~~Ge~~~IvG 485 (659)
T TIGR00954 406 LLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNGDVLIESLSFEVPSGNHLLICG 485 (659)
T ss_pred HHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCCCeeeecceEEECCCCEEEEEC
Confidence 99642110 0 0 0 0 01899999999999999
Q ss_pred CCCchHHHHHHHHHhCCCCCcHH------hhcceEEEcccCcccccccccccccccCC-------CCCCHHHHHHHHHHc
Q 047286 101 QSGSGKSTVINLVESFRFYAPEA------EQEKIGLVSKEPIFLFCDFNEGQYIPYGK-------QNASDEHIRPAVQLA 167 (632)
Q Consensus 101 ~sGsGKSTLl~ll~~~~~~~~~~------~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~-------~~~~~~~~~~~~~~~ 167 (632)
|||||||||+++|+|+ +++.. .+++++||+|+|.++.+++.+ |+.++. +...++++.++++.+
T Consensus 486 ~nGsGKSTLl~lL~Gl--~~~~~G~i~~~~~~~i~~v~Q~~~l~~~tv~e--ni~~~~~~~~~~~~~~~~~~i~~~l~~~ 561 (659)
T TIGR00954 486 PNGCGKSSLFRILGEL--WPVYGGRLTKPAKGKLFYVPQRPYMTLGTLRD--QIIYPDSSEDMKRRGLSDKDLEQILDNV 561 (659)
T ss_pred CCCCCHHHHHHHHhCC--CCCCCCeEeecCCCcEEEECCCCCCCCcCHHH--HHhcCCChhhhhccCCCHHHHHHHHHHc
Confidence 9999999999999954 33322 256799999999988887777 676653 234567888999999
Q ss_pred cchhhHh-------------hCCccccccc-----------------ccCCCCHHHHHHHHHHHHHHhCCceEEEEecCc
Q 047286 168 NAEKSID-------------KLPLGLDTVV-----------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCL 217 (632)
Q Consensus 168 ~l~~~i~-------------~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~ 217 (632)
++++.++ .||+|+++++ +|++||+.+++.+.+.+++. ++|+|++||++
T Consensus 562 ~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~--~~tvI~isH~~ 639 (659)
T TIGR00954 562 QLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF--GITLFSVSHRK 639 (659)
T ss_pred CCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEeCch
Confidence 9887664 4667777666 39999999999999998874 88999999999
Q ss_pred hHHhhcCeEEEEeC
Q 047286 218 ITIRNADCIIMVSK 231 (632)
Q Consensus 218 ~~~~~aD~i~vl~~ 231 (632)
+.++.||++++|+.
T Consensus 640 ~~~~~~d~il~l~~ 653 (659)
T TIGR00954 640 SLWKYHEYLLYMDG 653 (659)
T ss_pred HHHHhCCEEEEEeC
Confidence 99999999999973
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.3e-24 Score=200.56 Aligned_cols=159 Identities=21% Similarity=0.249 Sum_probs=125.2
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC------------------cHHhhcceEEEcccCccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA------------------PEAEQEKIGLVSKEPIFLFCDFNEGQ 146 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~------------------~~~~r~~i~~v~Q~~~~~~~~~~~~~ 146 (632)
++||+|++||+++|+||||||||||+++|.++.... ...+|+++|+++|++.+... ....+
T Consensus 22 ~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r-~sv~~ 100 (258)
T COG3638 22 DVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPR-LSVLE 100 (258)
T ss_pred eEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCCcccc-cHHHH
Confidence 399999999999999999999999999998542111 12368899999999876542 22233
Q ss_pred ccccCCC-----------CCC---HHHHHHHHHHccchh----hHhhCCcccccccc-----------------cCCCCH
Q 047286 147 YIPYGKQ-----------NAS---DEHIRPAVQLANAEK----SIDKLPLGLDTVVA-----------------TNAVDA 191 (632)
Q Consensus 147 ~i~~~~~-----------~~~---~~~~~~~~~~~~l~~----~i~~l~~g~~~~v~-----------------ts~LD~ 191 (632)
|+..|+. -.+ .....++++..++.+ ..+.||+|.+++|+ +++|||
T Consensus 101 NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp 180 (258)
T COG3638 101 NVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDP 180 (258)
T ss_pred HHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCCEEecCCcccccCh
Confidence 5544321 122 334556677777654 46789999999984 899999
Q ss_pred HHHHHHHHHHHHHh--CCceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHh
Q 047286 192 QSERIVQAAMVKLV--TNQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELI 244 (632)
Q Consensus 192 ~~~~~i~~~l~~~~--~~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~ 244 (632)
.+.+.+++.|+++. .|.|+|+.-|+++.++ +||||+-|++|+|+.+|+++|+-
T Consensus 181 ~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~~el~ 236 (258)
T COG3638 181 ESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASELT 236 (258)
T ss_pred hhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCChhhhh
Confidence 99999999999985 4789999999999886 59999999999999999999863
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.8e-23 Score=204.26 Aligned_cols=168 Identities=34% Similarity=0.517 Sum_probs=129.6
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC---------------CcHHhhcceEEEcccCcccccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY---------------APEAEQEKIGLVSKEPIFLFCDFNEGQYIP 149 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~---------------~~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~ 149 (632)
.+||++++||+++|+||||||||||+++|.|+... ++...++.++|++|++.++..++.+ |+.
T Consensus 20 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~--nl~ 97 (237)
T cd03252 20 NISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRD--NIA 97 (237)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhccchHHH--Hhh
Confidence 49999999999999999999999999999865321 1123467799999999877666655 666
Q ss_pred cCCCCCCHHHHHHHHHHccchhh---------------HhhCCccccccc-----------------ccCCCCHHHHHHH
Q 047286 150 YGKQNASDEHIRPAVQLANAEKS---------------IDKLPLGLDTVV-----------------ATNAVDAQSERIV 197 (632)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~l~~~---------------i~~l~~g~~~~v-----------------~ts~LD~~~~~~i 197 (632)
+.......+++.+.++..++.+. +..||+|+.+++ +|++||+.+++.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l 177 (237)
T cd03252 98 LADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAI 177 (237)
T ss_pred ccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHH
Confidence 54333334444444444444333 356677776666 3999999999999
Q ss_pred HHHHHHHhCCceEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHhcCCCcHHHHHH
Q 047286 198 QAAMVKLVTNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLV 255 (632)
Q Consensus 198 ~~~l~~~~~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~ 255 (632)
.+.|+++.+++|+|++||+++.+..||++++|++|++++.|+++++... .+.|..+.
T Consensus 178 ~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~~ 234 (237)
T cd03252 178 MRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE-NGLYAYLY 234 (237)
T ss_pred HHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhc-cChHHHHH
Confidence 9999998778899999999999888999999999999999999998765 45555443
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.4e-23 Score=219.02 Aligned_cols=166 Identities=23% Similarity=0.320 Sum_probs=131.9
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC-------------cHHhhcceEEEcccCcccc-ccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA-------------PEAEQEKIGLVSKEPIFLF-CDFNEGQYIPY 150 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~-------------~~~~r~~i~~v~Q~~~~~~-~~~~~~~~i~~ 150 (632)
.+||++++||+++|+||||||||||+++|.|+...+ ....++.++||+|++.+|+ .++.+ |+.+
T Consensus 22 ~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~e--Ni~~ 99 (356)
T PRK11650 22 GIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRE--NMAY 99 (356)
T ss_pred eeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHH--HHHh
Confidence 399999999999999999999999999998763221 0113578999999998764 35544 7776
Q ss_pred CCC--CCC----HHHHHHHHHHccchhh----HhhCCcccccccc-----------------cCCCCHHHHHHHHHHHHH
Q 047286 151 GKQ--NAS----DEHIRPAVQLANAEKS----IDKLPLGLDTVVA-----------------TNAVDAQSERIVQAAMVK 203 (632)
Q Consensus 151 ~~~--~~~----~~~~~~~~~~~~l~~~----i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~~l~~ 203 (632)
+.. ..+ .+++.++++.+++.+. ..+||+|++++++ |++||+.+++.+.+.|++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~ 179 (356)
T PRK11650 100 GLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQR 179 (356)
T ss_pred HHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 532 112 2456778888887654 5678889988883 999999999999999998
Q ss_pred HhC--CceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhcCCCcHHH
Q 047286 204 LVT--NQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIEDPEGAYS 252 (632)
Q Consensus 204 ~~~--~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~~~~~~~~ 252 (632)
+.+ +.|+|++||++..+. .||+|++|++|++++.|+++++.+.+...|.
T Consensus 180 l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p~~~~~ 231 (356)
T PRK11650 180 LHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPASTFV 231 (356)
T ss_pred HHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCCccHHH
Confidence 854 689999999998775 5999999999999999999999877655443
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-23 Score=218.85 Aligned_cols=165 Identities=25% Similarity=0.398 Sum_probs=132.1
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC-------------cHHhhcceEEEcccCccccc-cccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA-------------PEAEQEKIGLVSKEPIFLFC-DFNEGQYIPY 150 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~-------------~~~~r~~i~~v~Q~~~~~~~-~~~~~~~i~~ 150 (632)
.+||++++||+++|+||||||||||+++|.|+...+ ....+++++||+|++.+|.. ++.+ |+.+
T Consensus 24 ~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~e--Ni~~ 101 (351)
T PRK11432 24 NLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGE--NVGY 101 (351)
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHH--HHHH
Confidence 399999999999999999999999999998653221 11235789999999987653 5544 7876
Q ss_pred CCC--CCC----HHHHHHHHHHccchh----hHhhCCcccccccc-----------------cCCCCHHHHHHHHHHHHH
Q 047286 151 GKQ--NAS----DEHIRPAVQLANAEK----SIDKLPLGLDTVVA-----------------TNAVDAQSERIVQAAMVK 203 (632)
Q Consensus 151 ~~~--~~~----~~~~~~~~~~~~l~~----~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~~l~~ 203 (632)
+.. ... .+++.++++..++.+ ....||+|.+++++ +++||+.+++.+.+.|++
T Consensus 102 ~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~ 181 (351)
T PRK11432 102 GLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRE 181 (351)
T ss_pred HHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 532 112 346677888877653 46678889988883 899999999999999999
Q ss_pred HhC--CceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhcCCCcHH
Q 047286 204 LVT--NQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIEDPEGAY 251 (632)
Q Consensus 204 ~~~--~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~~~~~~~ 251 (632)
+.+ +.|+|++||+.+.+. .||+|++|++|++++.|+++++...+...|
T Consensus 182 l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p~~~~ 232 (351)
T PRK11432 182 LQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPASRF 232 (351)
T ss_pred HHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCchH
Confidence 854 789999999998875 599999999999999999999988766544
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.3e-23 Score=206.54 Aligned_cols=171 Identities=19% Similarity=0.327 Sum_probs=129.4
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC--------------------cHH---h-hcceEEEcccCcc-cc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA--------------------PEA---E-QEKIGLVSKEPIF-LF 139 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~--------------------~~~---~-r~~i~~v~Q~~~~-~~ 139 (632)
.+||++++||++||||+|||||||+.+.|+++...+ ..+ + .+.|+++||+|.. ++
T Consensus 23 ~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLn 102 (316)
T COG0444 23 GVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLN 102 (316)
T ss_pred ceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCchhhcC
Confidence 399999999999999999999999999987643211 011 2 2479999999852 33
Q ss_pred cccccccc----cccCCC----CCCHHHHHHHHHHccchh-------hHhhCCccccccc-----------------ccC
Q 047286 140 CDFNEGQY----IPYGKQ----NASDEHIRPAVQLANAEK-------SIDKLPLGLDTVV-----------------ATN 187 (632)
Q Consensus 140 ~~~~~~~~----i~~~~~----~~~~~~~~~~~~~~~l~~-------~i~~l~~g~~~~v-----------------~ts 187 (632)
...+.... +..... ....++..++++.+++.+ +..+||+|+.++| +|+
T Consensus 103 Pv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTT 182 (316)
T COG0444 103 PVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTT 182 (316)
T ss_pred ChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcc
Confidence 33322111 111111 111345677788887653 2345668888887 399
Q ss_pred CCCHHHHHHHHHHHHHHhC--CceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcCCCcHHHHHH
Q 047286 188 AVDAQSERIVQAAMVKLVT--NQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLV 255 (632)
Q Consensus 188 ~LD~~~~~~i~~~l~~~~~--~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~ 255 (632)
|||...+.+|++.|+++.+ +.++|+||||+..+.. ||||+||..|+|+|.|+.++++.++.++|.+..
T Consensus 183 ALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g~~~~i~~~P~HPYT~~L 253 (316)
T COG0444 183 ALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIFKNPKHPYTRGL 253 (316)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeCCHHHHhcCCCChHHHHH
Confidence 9999999999999999964 7899999999998865 999999999999999999999999999998644
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.2e-23 Score=217.78 Aligned_cols=165 Identities=22% Similarity=0.335 Sum_probs=132.6
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC-------------cHHhhcceEEEcccCcccc-ccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA-------------PEAEQEKIGLVSKEPIFLF-CDFNEGQYIPY 150 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~-------------~~~~r~~i~~v~Q~~~~~~-~~~~~~~~i~~ 150 (632)
.+||++++||+++|+||||||||||+++|.|+...+ ....++.++||+|++.+|+ .++.+ |+.+
T Consensus 22 ~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~e--Ni~~ 99 (353)
T TIGR03265 22 DISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVAD--NIAY 99 (353)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHH--HHHH
Confidence 389999999999999999999999999999763221 0123678999999998775 35544 7776
Q ss_pred CCCC--C----CHHHHHHHHHHccchh----hHhhCCcccccccc-----------------cCCCCHHHHHHHHHHHHH
Q 047286 151 GKQN--A----SDEHIRPAVQLANAEK----SIDKLPLGLDTVVA-----------------TNAVDAQSERIVQAAMVK 203 (632)
Q Consensus 151 ~~~~--~----~~~~~~~~~~~~~l~~----~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~~l~~ 203 (632)
+... . ..+++.++++..++.+ ...+||+|++++++ +++||+.+++.+.+.|++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~ 179 (353)
T TIGR03265 100 GLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQ 179 (353)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 5321 1 1346777888887654 56678899988883 899999999999999998
Q ss_pred HhC--CceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhcCCCcHH
Q 047286 204 LVT--NQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIEDPEGAY 251 (632)
Q Consensus 204 ~~~--~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~~~~~~~ 251 (632)
+.+ +.|+|++||+.+++. .||+|++|++|++++.|+++++.+.+...+
T Consensus 180 l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p~~~~ 230 (353)
T TIGR03265 180 LQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPATPF 230 (353)
T ss_pred HHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHH
Confidence 854 689999999999875 599999999999999999999988766544
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-22 Score=204.83 Aligned_cols=168 Identities=24% Similarity=0.419 Sum_probs=130.8
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC---------------CcHHhhcceEEEcccCcccccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY---------------APEAEQEKIGLVSKEPIFLFCDFNEGQYIP 149 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~---------------~~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~ 149 (632)
.+||++++||+++|+|+||||||||+++|+|+... ++...++.++|++|++.+|..++.+ |+.
T Consensus 39 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~~tv~~--nl~ 116 (257)
T cd03288 39 HVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRF--NLD 116 (257)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCCcccccHHHH--hcC
Confidence 39999999999999999999999999999865321 1223567899999999888776665 454
Q ss_pred cCCCCCCHHHHHHHHHHccchhhHhhCCccc---------------cccc-----------------ccCCCCHHHHHHH
Q 047286 150 YGKQNASDEHIRPAVQLANAEKSIDKLPLGL---------------DTVV-----------------ATNAVDAQSERIV 197 (632)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~---------------~~~v-----------------~ts~LD~~~~~~i 197 (632)
.... ...+++.++++..++.+.+..+|.|+ .+++ +|++||+.+++.+
T Consensus 117 ~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l 195 (257)
T cd03288 117 PECK-CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENIL 195 (257)
T ss_pred cCCC-CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHH
Confidence 3321 23445666666666666665555444 4333 3899999999999
Q ss_pred HHHHHHHhCCceEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHhcCCCcHHHHHH
Q 047286 198 QAAMVKLVTNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLV 255 (632)
Q Consensus 198 ~~~l~~~~~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~ 255 (632)
.+.++++.++.|+|++||+++.+..||+|++|++|++++.|+++++.....+.|..++
T Consensus 196 ~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 253 (257)
T cd03288 196 QKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLV 253 (257)
T ss_pred HHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHHH
Confidence 9999988778999999999999988999999999999999999999776555566554
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-22 Score=202.53 Aligned_cols=160 Identities=43% Similarity=0.628 Sum_probs=125.7
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC---------------CcHHhhcceEEEcccCcccccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY---------------APEAEQEKIGLVSKEPIFLFCDFNEGQYIP 149 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~---------------~~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~ 149 (632)
.+||++++|++++|+||||||||||+++|.|+... .+...++.++|++|++.++..++.+ |+.
T Consensus 20 ~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e--nl~ 97 (234)
T cd03251 20 DISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAE--NIA 97 (234)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeeccccHHH--Hhh
Confidence 39999999999999999999999999999865321 1123467799999999887766655 676
Q ss_pred cCCCCCCHHHHHHHHHHccchhhH---------------hhCCccccccc-----------------ccCCCCHHHHHHH
Q 047286 150 YGKQNASDEHIRPAVQLANAEKSI---------------DKLPLGLDTVV-----------------ATNAVDAQSERIV 197 (632)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~l~~~i---------------~~l~~g~~~~v-----------------~ts~LD~~~~~~i 197 (632)
+.......+++.+.++..++.+.+ ..||.|..+++ +|++||+.+++.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l 177 (234)
T cd03251 98 YGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLV 177 (234)
T ss_pred ccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHH
Confidence 654333444555555554444443 35666666655 3899999999999
Q ss_pred HHHHHHHhCCceEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHhcC
Q 047286 198 QAAMVKLVTNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIED 246 (632)
Q Consensus 198 ~~~l~~~~~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~~ 246 (632)
.+.|+++.++.|+|++||+++.+..||++++|++|++++.|+.+++...
T Consensus 178 ~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 226 (234)
T cd03251 178 QAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ 226 (234)
T ss_pred HHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHc
Confidence 9999998778899999999999888999999999999999999888654
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.7e-23 Score=216.53 Aligned_cols=165 Identities=24% Similarity=0.381 Sum_probs=130.8
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC-------------cHHhhcceEEEcccCccccc-cccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA-------------PEAEQEKIGLVSKEPIFLFC-DFNEGQYIPY 150 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~-------------~~~~r~~i~~v~Q~~~~~~~-~~~~~~~i~~ 150 (632)
.+||+|++||+++|+||||||||||+++|.|+...+ ....++.++|++|++.+|.. ++.+ |+.+
T Consensus 20 ~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~e--ni~~ 97 (353)
T PRK10851 20 DISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFD--NIAF 97 (353)
T ss_pred EeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHH--HHHh
Confidence 399999999999999999999999999998653211 11235679999999877643 4544 6766
Q ss_pred CCC------CCC----HHHHHHHHHHccchh----hHhhCCcccccccc-----------------cCCCCHHHHHHHHH
Q 047286 151 GKQ------NAS----DEHIRPAVQLANAEK----SIDKLPLGLDTVVA-----------------TNAVDAQSERIVQA 199 (632)
Q Consensus 151 ~~~------~~~----~~~~~~~~~~~~l~~----~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~ 199 (632)
+.. ..+ .+++.++++..++.+ ...+||+|++++++ |++||+.+++.+.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~ 177 (353)
T PRK10851 98 GLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRR 177 (353)
T ss_pred hhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH
Confidence 532 112 345677788877754 45678889988883 99999999999999
Q ss_pred HHHHHhC--CceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcCCCcHH
Q 047286 200 AMVKLVT--NQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIEDPEGAY 251 (632)
Q Consensus 200 ~l~~~~~--~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~~~~~~ 251 (632)
.|+++.+ +.|+|++||+++.+.. ||+|++|++|++++.|+++++...+...|
T Consensus 178 ~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~p~~~~ 232 (353)
T PRK10851 178 WLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPATRF 232 (353)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccchH
Confidence 9999864 6899999999998755 99999999999999999999987765544
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.9e-23 Score=204.71 Aligned_cols=160 Identities=23% Similarity=0.294 Sum_probs=125.8
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC---------------c---HHhhcceEEEcccCccccc-ccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA---------------P---EAEQEKIGLVSKEPIFLFC-DFNEG 145 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~---------------~---~~~r~~i~~v~Q~~~~~~~-~~~~~ 145 (632)
.+||++++||+++|+||||||||||+++|.|+.... + ..+++.++|++|++.++.. ++.+
T Consensus 18 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~- 96 (235)
T cd03261 18 GVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFE- 96 (235)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHH-
Confidence 399999999999999999999999999998653210 1 2346779999999876653 5544
Q ss_pred cccccCCC---CCC----HHHHHHHHHHccchh----hHhhCCccccccc-----------------ccCCCCHHHHHHH
Q 047286 146 QYIPYGKQ---NAS----DEHIRPAVQLANAEK----SIDKLPLGLDTVV-----------------ATNAVDAQSERIV 197 (632)
Q Consensus 146 ~~i~~~~~---~~~----~~~~~~~~~~~~l~~----~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i 197 (632)
|+.++.. ..+ .+++.++++.+++.+ .+..||+|+.+++ +|++||+.+++.+
T Consensus 97 -~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l 175 (235)
T cd03261 97 -NVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVI 175 (235)
T ss_pred -HHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHH
Confidence 5554311 112 234566777777644 4567899998887 3999999999999
Q ss_pred HHHHHHHhC--CceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcC
Q 047286 198 QAAMVKLVT--NQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIED 246 (632)
Q Consensus 198 ~~~l~~~~~--~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~ 246 (632)
.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 176 ~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 227 (235)
T cd03261 176 DDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRAS 227 (235)
T ss_pred HHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcCC
Confidence 999999853 7899999999998765 999999999999999999988654
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.6e-23 Score=216.52 Aligned_cols=164 Identities=23% Similarity=0.352 Sum_probs=131.0
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC-------------cHHhhcceEEEcccCccccc-ccccccccccC
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA-------------PEAEQEKIGLVSKEPIFLFC-DFNEGQYIPYG 151 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~-------------~~~~r~~i~~v~Q~~~~~~~-~~~~~~~i~~~ 151 (632)
+||++++||+++|+||||||||||+++|+|+.... ....++.++||+|++.+|.. ++.+ |+.++
T Consensus 33 vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~e--Ni~~~ 110 (375)
T PRK09452 33 LDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFE--NVAFG 110 (375)
T ss_pred eEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHH--HHHHH
Confidence 89999999999999999999999999999753221 01135779999999987643 5544 77765
Q ss_pred CC--CCC----HHHHHHHHHHccchh----hHhhCCcccccccc-----------------cCCCCHHHHHHHHHHHHHH
Q 047286 152 KQ--NAS----DEHIRPAVQLANAEK----SIDKLPLGLDTVVA-----------------TNAVDAQSERIVQAAMVKL 204 (632)
Q Consensus 152 ~~--~~~----~~~~~~~~~~~~l~~----~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~~l~~~ 204 (632)
.. ... .+++.++++..++.+ ...+||+|++++++ +++||+.+++.+.+.|+++
T Consensus 111 l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l 190 (375)
T PRK09452 111 LRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKAL 190 (375)
T ss_pred HhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHH
Confidence 32 112 345677788877755 45668889888884 8999999999999999998
Q ss_pred hC--CceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhcCCCcHH
Q 047286 205 VT--NQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIEDPEGAY 251 (632)
Q Consensus 205 ~~--~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~~~~~~~ 251 (632)
.+ +.|+|+|||+..++. .||+|++|++|+|++.|+++++.+.+...|
T Consensus 191 ~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p~~~~ 240 (375)
T PRK09452 191 QRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPKNLF 240 (375)
T ss_pred HHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcccHH
Confidence 54 789999999998865 599999999999999999999988766544
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.4e-23 Score=216.39 Aligned_cols=165 Identities=19% Similarity=0.316 Sum_probs=131.2
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCc--H-------------HhhcceEEEcccCccccc-cccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAP--E-------------AEQEKIGLVSKEPIFLFC-DFNEGQYI 148 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~--~-------------~~r~~i~~v~Q~~~~~~~-~~~~~~~i 148 (632)
.+||++++||+++|+||||||||||+++|.|+...+. . ..++.++||+|++.+|.. ++.+ |+
T Consensus 23 ~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~e--nl 100 (362)
T TIGR03258 23 DLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVED--NV 100 (362)
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHH--HH
Confidence 3999999999999999999999999999997643222 1 135679999999987643 4444 77
Q ss_pred ccCCC--CCC----HHHHHHHHHHccchh----hHhhCCcccccccc-----------------cCCCCHHHHHHHHHHH
Q 047286 149 PYGKQ--NAS----DEHIRPAVQLANAEK----SIDKLPLGLDTVVA-----------------TNAVDAQSERIVQAAM 201 (632)
Q Consensus 149 ~~~~~--~~~----~~~~~~~~~~~~l~~----~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~~l 201 (632)
.++.. ... .+++.++++..++++ ...+||+|++++++ +++||+.+++.+.+.|
T Consensus 101 ~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l 180 (362)
T TIGR03258 101 AFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEI 180 (362)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHH
Confidence 66432 112 245677888877654 45678889888884 8999999999999999
Q ss_pred HHHhC---CceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhcCCCcHH
Q 047286 202 VKLVT---NQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIEDPEGAY 251 (632)
Q Consensus 202 ~~~~~---~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~~~~~~~ 251 (632)
+++.+ +.|+|++||+++++. .||+|++|++|++++.|+++++...+.+.|
T Consensus 181 ~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~p~~~~ 234 (362)
T TIGR03258 181 AALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAPADGF 234 (362)
T ss_pred HHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcCcHH
Confidence 98854 679999999998875 499999999999999999999988765544
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-22 Score=201.00 Aligned_cols=166 Identities=37% Similarity=0.564 Sum_probs=128.7
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC---------------CcHHhhcceEEEcccCcccccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY---------------APEAEQEKIGLVSKEPIFLFCDFNEGQYIP 149 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~---------------~~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~ 149 (632)
.+||+|++|++++|+||||||||||+++|.|+... +....++.++|++|++.++..++.+ |+.
T Consensus 19 ~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~--nl~ 96 (236)
T cd03253 19 DVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGY--NIR 96 (236)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhcchHHH--HHh
Confidence 38999999999999999999999999999865321 1122456799999999888766655 676
Q ss_pred cCCCCCCHHHHHHHHHHccchhhHh---------------hCCccccccc-----------------ccCCCCHHHHHHH
Q 047286 150 YGKQNASDEHIRPAVQLANAEKSID---------------KLPLGLDTVV-----------------ATNAVDAQSERIV 197 (632)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~l~~~i~---------------~l~~g~~~~v-----------------~ts~LD~~~~~~i 197 (632)
++......+++.+.++.+++.+.+. .||.|..+++ +|++||+.+++.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l 176 (236)
T cd03253 97 YGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREI 176 (236)
T ss_pred hcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 6543344555566666666555443 4555665555 3899999999999
Q ss_pred HHHHHHHhCCceEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHhcCCCcHHHH
Q 047286 198 QAAMVKLVTNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQ 253 (632)
Q Consensus 198 ~~~l~~~~~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~~~~~~~~~ 253 (632)
.+.|.++.++.|+|++||+.+.+..||++++|++|++++.|+.+++... ...|..
T Consensus 177 ~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~-~~~~~~ 231 (236)
T cd03253 177 QAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAK-GGLYAE 231 (236)
T ss_pred HHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc-ccHHHH
Confidence 9999998668899999999999888999999999999999999888654 344443
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.6e-23 Score=212.58 Aligned_cols=160 Identities=18% Similarity=0.337 Sum_probs=126.6
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC--------------cHHhhcceEEEcccCcccc-cccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA--------------PEAEQEKIGLVSKEPIFLF-CDFNEGQYIP 149 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~--------------~~~~r~~i~~v~Q~~~~~~-~~~~~~~~i~ 149 (632)
.+||+|++||+++|+||||||||||+++|+|+...+ +...++++||+||++.++. .+..+ |+.
T Consensus 25 ~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e--~l~ 102 (306)
T PRK13537 25 GLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRE--NLL 102 (306)
T ss_pred cceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHH--HHH
Confidence 399999999999999999999999999998653221 1235678999999987654 34444 554
Q ss_pred cCC--CCCC----HHHHHHHHHHccch----hhHhhCCccccccc-----------------ccCCCCHHHHHHHHHHHH
Q 047286 150 YGK--QNAS----DEHIRPAVQLANAE----KSIDKLPLGLDTVV-----------------ATNAVDAQSERIVQAAMV 202 (632)
Q Consensus 150 ~~~--~~~~----~~~~~~~~~~~~l~----~~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l~ 202 (632)
+.. ...+ .+++.++++.+++. ..+..||.|+++++ +|++||+.+++.+++.|+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~ 182 (306)
T PRK13537 103 VFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLR 182 (306)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHH
Confidence 311 1111 23456677777764 45778999998888 399999999999999999
Q ss_pred HHh-CCceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcC
Q 047286 203 KLV-TNQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIED 246 (632)
Q Consensus 203 ~~~-~~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~ 246 (632)
++. +++|+|++||+++.++. ||+|++|++|++++.|+++++...
T Consensus 183 ~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 183 SLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred HHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 985 47899999999999865 999999999999999999998654
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.4e-23 Score=212.87 Aligned_cols=171 Identities=22% Similarity=0.335 Sum_probs=130.2
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC--c-----------------HHh----hcceEEEcccCcc-ccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA--P-----------------EAE----QEKIGLVSKEPIF-LFC 140 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~--~-----------------~~~----r~~i~~v~Q~~~~-~~~ 140 (632)
.+||+|++||+++|+||||||||||+++|.|+.... + ... ++.++|++|++.. ++.
T Consensus 25 ~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p 104 (326)
T PRK11022 25 RISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNP 104 (326)
T ss_pred eeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchhhcCC
Confidence 399999999999999999999999999998754210 0 111 1369999999852 333
Q ss_pred cccccccc----ccC--CC-CCCHHHHHHHHHHccchh-------hHhhCCcccccccc-----------------cCCC
Q 047286 141 DFNEGQYI----PYG--KQ-NASDEHIRPAVQLANAEK-------SIDKLPLGLDTVVA-----------------TNAV 189 (632)
Q Consensus 141 ~~~~~~~i----~~~--~~-~~~~~~~~~~~~~~~l~~-------~i~~l~~g~~~~v~-----------------ts~L 189 (632)
.++..+++ ... .. ....+++.++++.+++.+ ...+||+|+.++++ |++|
T Consensus 105 ~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~L 184 (326)
T PRK11022 105 CYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTAL 184 (326)
T ss_pred cCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Confidence 33322122 111 11 112345778888888743 45678899988883 9999
Q ss_pred CHHHHHHHHHHHHHHhC--CceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhcCCCcHHHHHH
Q 047286 190 DAQSERIVQAAMVKLVT--NQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLV 255 (632)
Q Consensus 190 D~~~~~~i~~~l~~~~~--~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~ 255 (632)
|+.++..+++.|+++.+ +.|+|+|||++..+. .||+|++|++|+|++.|+.+++.+++.+.|.+..
T Consensus 185 D~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~g~~~~~~~~p~hpyt~~l 253 (326)
T PRK11022 185 DVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIFRAPRHPYTQAL 253 (326)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhhCCCChHHHHH
Confidence 99999999999999853 789999999999885 5999999999999999999999988777887543
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.2e-23 Score=213.47 Aligned_cols=170 Identities=20% Similarity=0.300 Sum_probs=130.1
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC---------------c---HHhhcceEEEcccCc-ccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA---------------P---EAEQEKIGLVSKEPI-FLFCDFNEG 145 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~---------------~---~~~r~~i~~v~Q~~~-~~~~~~~~~ 145 (632)
.+||+|++||+++|+|+||||||||+++|.|+.... . ...+++++||+|+|. .++...+..
T Consensus 39 ~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~ 118 (331)
T PRK15079 39 GVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIG 118 (331)
T ss_pred eEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHH
Confidence 399999999999999999999999999998653211 1 124578999999983 233333333
Q ss_pred cccccCC----CCCC----HHHHHHHHHHccch-----hhHhhCCcccccccc-----------------cCCCCHHHHH
Q 047286 146 QYIPYGK----QNAS----DEHIRPAVQLANAE-----KSIDKLPLGLDTVVA-----------------TNAVDAQSER 195 (632)
Q Consensus 146 ~~i~~~~----~~~~----~~~~~~~~~~~~l~-----~~i~~l~~g~~~~v~-----------------ts~LD~~~~~ 195 (632)
+|+.+.. ...+ .+++.++++.+++. ....+||+|+.++++ |++||+.++.
T Consensus 119 ~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~ 198 (331)
T PRK15079 119 EIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQA 198 (331)
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHH
Confidence 3553211 1122 23456677777763 334578889988883 9999999999
Q ss_pred HHHHHHHHHhC--CceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcCCCcHHHHH
Q 047286 196 IVQAAMVKLVT--NQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIEDPEGAYSQL 254 (632)
Q Consensus 196 ~i~~~l~~~~~--~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~~~~~~~~~ 254 (632)
.+.+.|+++.+ +.|+|+||||+..+.. ||+|++|++|+|++.|+.+++..++...|.+.
T Consensus 199 ~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive~g~~~~i~~~~~~py~~~ 260 (331)
T PRK15079 199 QVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHNPLHPYTKA 260 (331)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHcCCCCHHHHH
Confidence 99999999854 7899999999999875 99999999999999999999988777777653
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.2e-23 Score=189.06 Aligned_cols=160 Identities=19% Similarity=0.370 Sum_probs=129.7
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCC--------------CCcHHhhcceEEEcccCccccccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRF--------------YAPEAEQEKIGLVSKEPIFLFCDFNEGQYIPY 150 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~--------------~~~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~ 150 (632)
++||++++|++++|.|||||||||+|++|.++.. .+|...|++||+++.+.. ++..++..+|+.|
T Consensus 20 dVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~g-lY~RlT~rEnl~~ 98 (245)
T COG4555 20 DVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERG-LYARLTARENLKY 98 (245)
T ss_pred heeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecCCcC-hhhhhhHHHHHHH
Confidence 4999999999999999999999999999975432 246668999999997665 4556666667765
Q ss_pred CC-----C-CCCHHHHHHHHHHccc----hhhHhhCCcccccccc-----------------cCCCCHHHHHHHHHHHHH
Q 047286 151 GK-----Q-NASDEHIRPAVQLANA----EKSIDKLPLGLDTVVA-----------------TNAVDAQSERIVQAAMVK 203 (632)
Q Consensus 151 ~~-----~-~~~~~~~~~~~~~~~l----~~~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~~l~~ 203 (632)
.. . ...+.++.+..+..++ +.....+|.|++++|+ |+|||..+.+.+.+.+++
T Consensus 99 Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q 178 (245)
T COG4555 99 FARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQ 178 (245)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHH
Confidence 31 1 1124455556665554 4556789999999883 999999999999999999
Q ss_pred HhC-CceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhc
Q 047286 204 LVT-NQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIE 245 (632)
Q Consensus 204 ~~~-~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~ 245 (632)
++. ++++|+.||.+++++. ||+|+++++|+++..|+.+++..
T Consensus 179 ~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 179 LKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred hhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHH
Confidence 975 8999999999999984 99999999999999999998864
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=8e-23 Score=206.61 Aligned_cols=162 Identities=20% Similarity=0.295 Sum_probs=127.4
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCC-CC---------------------cHHhhcceEEEcccCccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRF-YA---------------------PEAEQEKIGLVSKEPIFLFCDF 142 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~-~~---------------------~~~~r~~i~~v~Q~~~~~~~~~ 142 (632)
.+||++++||+++|+||||||||||+++|.|+.. +. +..+++.++|++|++.+|..++
T Consensus 24 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv 103 (253)
T PRK14242 24 DISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSI 103 (253)
T ss_pred ceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCCcCcH
Confidence 3999999999999999999999999999987521 00 0123567999999998776555
Q ss_pred ccccccccCC--CC-----CCHHHHHHHHHHccch--------hhHhhCCcccccccc-----------------cCCCC
Q 047286 143 NEGQYIPYGK--QN-----ASDEHIRPAVQLANAE--------KSIDKLPLGLDTVVA-----------------TNAVD 190 (632)
Q Consensus 143 ~~~~~i~~~~--~~-----~~~~~~~~~~~~~~l~--------~~i~~l~~g~~~~v~-----------------ts~LD 190 (632)
.+ |+.++. .. ...+++.++++.+++. .....||+|+.++++ |++||
T Consensus 104 ~e--nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD 181 (253)
T PRK14242 104 FE--NVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALD 181 (253)
T ss_pred HH--HHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 55 565431 11 1134566677777763 235678999988873 99999
Q ss_pred HHHHHHHHHHHHHHhCCceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhcCCC
Q 047286 191 AQSERIVQAAMVKLVTNQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIEDPE 248 (632)
Q Consensus 191 ~~~~~~i~~~l~~~~~~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~~~~ 248 (632)
+.+++.+.+.|+++.++.|+|++||+++.+. .||++++|++|++++.|+++++...+.
T Consensus 182 ~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~ 240 (253)
T PRK14242 182 PIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIFTRPR 240 (253)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHHcCCC
Confidence 9999999999999877789999999999885 499999999999999999999876543
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-22 Score=205.84 Aligned_cols=166 Identities=22% Similarity=0.334 Sum_probs=129.3
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC----------------------cHHhhcceEEEcccCccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA----------------------PEAEQEKIGLVSKEPIFLFCDF 142 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~----------------------~~~~r~~i~~v~Q~~~~~~~~~ 142 (632)
.+||+|++||+++|+||||||||||+++|.|+.... ....++.++|++|++.++..++
T Consensus 25 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv 104 (254)
T PRK14273 25 NINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFLMSI 104 (254)
T ss_pred ceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeeccccccCcH
Confidence 399999999999999999999999999998653210 0124667999999998775555
Q ss_pred ccccccccCCC--C-CC----HHHHHHHHHHccc--------hhhHhhCCcccccccc-----------------cCCCC
Q 047286 143 NEGQYIPYGKQ--N-AS----DEHIRPAVQLANA--------EKSIDKLPLGLDTVVA-----------------TNAVD 190 (632)
Q Consensus 143 ~~~~~i~~~~~--~-~~----~~~~~~~~~~~~l--------~~~i~~l~~g~~~~v~-----------------ts~LD 190 (632)
.+ |+.++.. . .. .+++.++++.+++ +.....||+|++++++ |++||
T Consensus 105 ~e--ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD 182 (254)
T PRK14273 105 YD--NISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALD 182 (254)
T ss_pred HH--HHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccC
Confidence 55 6655321 1 11 2345666666654 3345678999988773 99999
Q ss_pred HHHHHHHHHHHHHHhCCceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcCCCcHHH
Q 047286 191 AQSERIVQAAMVKLVTNQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIEDPEGAYS 252 (632)
Q Consensus 191 ~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~~~~~~~ 252 (632)
+.+++.+.+.|+++.++.|+|++||+++.+.. ||++++|++|++++.|+++++.+.+...|.
T Consensus 183 ~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~ 245 (254)
T PRK14273 183 PISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELFFNPKNTKT 245 (254)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCChHH
Confidence 99999999999999777899999999998755 999999999999999999999866555443
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-22 Score=204.31 Aligned_cols=162 Identities=22% Similarity=0.336 Sum_probs=128.3
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC-C-----------------cHHhhcceEEEcccCccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY-A-----------------PEAEQEKIGLVSKEPIFLFCDFNEGQ 146 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~-~-----------------~~~~r~~i~~v~Q~~~~~~~~~~~~~ 146 (632)
.+||++++||+++|+||||||||||+++|.|+... . ....++.++|++|++.+|..++.+
T Consensus 20 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~~tv~e-- 97 (246)
T PRK14269 20 DINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVKSIYE-- 97 (246)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCccccccHHH--
Confidence 39999999999999999999999999999875310 0 123466799999999888766655
Q ss_pred ccccCCC--------CCCHHHHHHHHHHccch--------hhHhhCCcccccccc-----------------cCCCCHHH
Q 047286 147 YIPYGKQ--------NASDEHIRPAVQLANAE--------KSIDKLPLGLDTVVA-----------------TNAVDAQS 193 (632)
Q Consensus 147 ~i~~~~~--------~~~~~~~~~~~~~~~l~--------~~i~~l~~g~~~~v~-----------------ts~LD~~~ 193 (632)
|+.++.. ....+++.++++.+++. .....||.|..++++ |++||+.+
T Consensus 98 ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~ 177 (246)
T PRK14269 98 NISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPIS 177 (246)
T ss_pred HhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 5654311 11123456777877773 234568889888773 99999999
Q ss_pred HHHHHHHHHHHhCCceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhcCCC
Q 047286 194 ERIVQAAMVKLVTNQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIEDPE 248 (632)
Q Consensus 194 ~~~i~~~l~~~~~~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~~~~ 248 (632)
+..+.+.|.++.+++|+|++||+++.+. .||++++|++|++++.|+++++...+.
T Consensus 178 ~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 233 (246)
T PRK14269 178 SGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFENPK 233 (246)
T ss_pred HHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhCCC
Confidence 9999999999877889999999999876 599999999999999999999876543
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-22 Score=214.33 Aligned_cols=162 Identities=22% Similarity=0.313 Sum_probs=131.6
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC-------------------cHHhhcceEEEcccCccccc-cccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA-------------------PEAEQEKIGLVSKEPIFLFC-DFNE 144 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~-------------------~~~~r~~i~~v~Q~~~~~~~-~~~~ 144 (632)
.+||++++||+++|+||||||||||+++|.|+...+ ....++.++|++|++.+|.. ++.+
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e 95 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRG 95 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHH
Confidence 389999999999999999999999999998653211 11235789999999976642 4444
Q ss_pred ccccccCCCCCCHHHHHHHHHHccchhh----HhhCCcccccccc-----------------cCCCCHHHHHHHHHHHHH
Q 047286 145 GQYIPYGKQNASDEHIRPAVQLANAEKS----IDKLPLGLDTVVA-----------------TNAVDAQSERIVQAAMVK 203 (632)
Q Consensus 145 ~~~i~~~~~~~~~~~~~~~~~~~~l~~~----i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~~l~~ 203 (632)
|+.++......+++.++++..++.+. ...||+|++++++ |++||+.+++.+.+.|++
T Consensus 96 --nl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~ 173 (352)
T PRK11144 96 --NLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLER 173 (352)
T ss_pred --HHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 77766444445678888888887654 4568889888883 999999999999999998
Q ss_pred HhC--CceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcCCC
Q 047286 204 LVT--NQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIEDPE 248 (632)
Q Consensus 204 ~~~--~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~~~ 248 (632)
+.+ +.|+|++||+++.+.. ||++++|++|++++.|+++++...+.
T Consensus 174 l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p~ 221 (352)
T PRK11144 174 LAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSA 221 (352)
T ss_pred HHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCcc
Confidence 853 6899999999988755 99999999999999999999987754
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.3e-23 Score=215.68 Aligned_cols=166 Identities=20% Similarity=0.361 Sum_probs=130.8
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC--------------C-----cHH---hh-cceEEEcccCcccc-cc
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY--------------A-----PEA---EQ-EKIGLVSKEPIFLF-CD 141 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~--------------~-----~~~---~r-~~i~~v~Q~~~~~~-~~ 141 (632)
+||+|++||+++|+||||||||||+++|.|+... + +.. .| ++++|++|++.+|+ .+
T Consensus 43 vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~T 122 (382)
T TIGR03415 43 ASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLT 122 (382)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCc
Confidence 9999999999999999999999999999865211 0 111 12 57999999998775 45
Q ss_pred cccccccccCCC--CCC----HHHHHHHHHHccchh----hHhhCCcccccccc-----------------cCCCCHHHH
Q 047286 142 FNEGQYIPYGKQ--NAS----DEHIRPAVQLANAEK----SIDKLPLGLDTVVA-----------------TNAVDAQSE 194 (632)
Q Consensus 142 ~~~~~~i~~~~~--~~~----~~~~~~~~~~~~l~~----~i~~l~~g~~~~v~-----------------ts~LD~~~~ 194 (632)
+.+ |+.++.. ... .+++.++++..++.+ ...+||+|++++++ |++||+.++
T Consensus 123 v~e--Ni~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r 200 (382)
T TIGR03415 123 VEE--NVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIR 200 (382)
T ss_pred HHH--HHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHH
Confidence 555 6765421 111 245677888888754 45678899988883 999999999
Q ss_pred HHHHHHHHHHhC--CceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhcCCCcHHHH
Q 047286 195 RIVQAAMVKLVT--NQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIEDPEGAYSQ 253 (632)
Q Consensus 195 ~~i~~~l~~~~~--~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~~~~~~~~~ 253 (632)
+.+++.|.++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++...+...|.+
T Consensus 201 ~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p~~~~~~ 262 (382)
T TIGR03415 201 TQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYVA 262 (382)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCcchHHHH
Confidence 999999999854 789999999999874 59999999999999999999998765555543
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-22 Score=204.54 Aligned_cols=163 Identities=22% Similarity=0.348 Sum_probs=127.3
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC----------------------cHHhhcceEEEcccCccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA----------------------PEAEQEKIGLVSKEPIFLFCDF 142 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~----------------------~~~~r~~i~~v~Q~~~~~~~~~ 142 (632)
.+||+|++||+++|+||||||||||+++|.|+.... ....++.++|++|++.++..++
T Consensus 19 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv 98 (247)
T TIGR00972 19 NINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSI 98 (247)
T ss_pred ceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccCCCCH
Confidence 399999999999999999999999999998654211 1123567999999998776555
Q ss_pred ccccccccCC--CC-CC----HHHHHHHHHHccch----h----hHhhCCccccccc-----------------ccCCCC
Q 047286 143 NEGQYIPYGK--QN-AS----DEHIRPAVQLANAE----K----SIDKLPLGLDTVV-----------------ATNAVD 190 (632)
Q Consensus 143 ~~~~~i~~~~--~~-~~----~~~~~~~~~~~~l~----~----~i~~l~~g~~~~v-----------------~ts~LD 190 (632)
.+ |+.++. .. .. .+++.++++..++. + ....||+|+.+++ +|++||
T Consensus 99 ~e--~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD 176 (247)
T TIGR00972 99 YD--NIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALD 176 (247)
T ss_pred HH--HHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 54 554421 11 11 24566777777775 2 3467888988877 399999
Q ss_pred HHHHHHHHHHHHHHhCCceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcCCCc
Q 047286 191 AQSERIVQAAMVKLVTNQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIEDPEG 249 (632)
Q Consensus 191 ~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~~~~ 249 (632)
+.++..+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++...+..
T Consensus 177 ~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~ 236 (247)
T TIGR00972 177 PIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFTNPKE 236 (247)
T ss_pred HHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCC
Confidence 99999999999998767899999999998764 999999999999999999998765433
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.7e-23 Score=186.89 Aligned_cols=153 Identities=20% Similarity=0.252 Sum_probs=121.3
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCC------------------CCcHHhhcceEEEcccCccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRF------------------YAPEAEQEKIGLVSKEPIFLFCDFNEGQ 146 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~------------------~~~~~~r~~i~~v~Q~~~~~~~~~~~~~ 146 (632)
++||+|++||++.|+||||||||||+|+|.+... .+..-+|++||+|+||.-+.. ..+..+
T Consensus 20 ~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~-~~tvye 98 (223)
T COG2884 20 DVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLP-DRTVYE 98 (223)
T ss_pred CceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeeccccc-cchHhh
Confidence 3999999999999999999999999999974311 112237999999999976543 333344
Q ss_pred ccccCCC------CCCHHHHHHHHHHccchhhHhh----CCcccccccc-----------------cCCCCHHHHHHHHH
Q 047286 147 YIPYGKQ------NASDEHIRPAVQLANAEKSIDK----LPLGLDTVVA-----------------TNAVDAQSERIVQA 199 (632)
Q Consensus 147 ~i~~~~~------~~~~~~~~~~~~~~~l~~~i~~----l~~g~~~~v~-----------------ts~LD~~~~~~i~~ 199 (632)
|+.+... ....+++.++++.+++.+.... ||+|.+++++ |.+|||....++++
T Consensus 99 NVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~ 178 (223)
T COG2884 99 NVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMR 178 (223)
T ss_pred hhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHH
Confidence 7776532 1234667889999998876655 5578888873 99999999999999
Q ss_pred HHHHHh-CCceEEEEecCchHHhh-cCeEEEEeCCeEEEec
Q 047286 200 AMVKLV-TNQTVVIVANCLITIRN-ADCIIMVSKGKIVEKG 238 (632)
Q Consensus 200 ~l~~~~-~~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g 238 (632)
.+.++. .|.||++.||+.+.+.. -.|++.+++|+++.+.
T Consensus 179 lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 179 LFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred HHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence 999996 48999999999999976 6789999999998764
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.2e-22 Score=200.27 Aligned_cols=159 Identities=36% Similarity=0.560 Sum_probs=125.9
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC---------------cHHhhcceEEEcccCcccccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA---------------PEAEQEKIGLVSKEPIFLFCDFNEGQYIP 149 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~---------------~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~ 149 (632)
.+||++++|++++|+||||||||||+++|.|..... +...++.++|++|++.++..++.+ |+.
T Consensus 21 ~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~--~~~ 98 (229)
T cd03254 21 DINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIME--NIR 98 (229)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhhHHHH--HHh
Confidence 399999999999999999999999999998653211 123467799999999877766655 666
Q ss_pred cCCCCCCHHHHHHHHHHccchhhH---------------hhCCccccccc-----------------ccCCCCHHHHHHH
Q 047286 150 YGKQNASDEHIRPAVQLANAEKSI---------------DKLPLGLDTVV-----------------ATNAVDAQSERIV 197 (632)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~l~~~i---------------~~l~~g~~~~v-----------------~ts~LD~~~~~~i 197 (632)
+.......+++.++++.+++.+.+ ..||.|+.+++ +|++||+.+++.+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l 178 (229)
T cd03254 99 LGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLI 178 (229)
T ss_pred ccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHH
Confidence 654333455666666666655444 45666666665 3899999999999
Q ss_pred HHHHHHHhCCceEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHhc
Q 047286 198 QAAMVKLVTNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIE 245 (632)
Q Consensus 198 ~~~l~~~~~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~ 245 (632)
.+.|+++.+++|+|++||++..++.||++++|++|++++.|+.+++..
T Consensus 179 ~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 226 (229)
T cd03254 179 QEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLA 226 (229)
T ss_pred HHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 999999877889999999999888899999999999999998887754
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-22 Score=204.96 Aligned_cols=165 Identities=22% Similarity=0.311 Sum_probs=128.9
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC----------------------CcHHhhcceEEEcccCccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY----------------------APEAEQEKIGLVSKEPIFLFCDF 142 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~----------------------~~~~~r~~i~~v~Q~~~~~~~~~ 142 (632)
.+||+|++||+++|+||||||||||+++|.|+... +....+++++|++|++.++..++
T Consensus 31 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv 110 (260)
T PRK10744 31 NINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSI 110 (260)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccCcCcH
Confidence 39999999999999999999999999999876320 01124678999999998776555
Q ss_pred ccccccccCCC---CCC----HHHHHHHHHHccc--------hhhHhhCCcccccccc-----------------cCCCC
Q 047286 143 NEGQYIPYGKQ---NAS----DEHIRPAVQLANA--------EKSIDKLPLGLDTVVA-----------------TNAVD 190 (632)
Q Consensus 143 ~~~~~i~~~~~---~~~----~~~~~~~~~~~~l--------~~~i~~l~~g~~~~v~-----------------ts~LD 190 (632)
.+ |+.++.. ..+ .+++.++++.+++ +.....||+|..++++ |++||
T Consensus 111 ~~--nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD 188 (260)
T PRK10744 111 YD--NIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALD 188 (260)
T ss_pred HH--HHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCC
Confidence 54 5554321 112 2456677777765 2335678999988773 99999
Q ss_pred HHHHHHHHHHHHHHhCCceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhcCCCcHH
Q 047286 191 AQSERIVQAAMVKLVTNQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIEDPEGAY 251 (632)
Q Consensus 191 ~~~~~~i~~~l~~~~~~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~~~~~~~ 251 (632)
+.+++.+.+.|+++.++.|+|++||+++.+. .||++++|++|++++.|+.+++...+...+
T Consensus 189 ~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~ 250 (260)
T PRK10744 189 PISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTIFTKPAKKQ 250 (260)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCcHH
Confidence 9999999999999877789999999999885 499999999999999999999876544433
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-22 Score=209.59 Aligned_cols=160 Identities=21% Similarity=0.324 Sum_probs=126.7
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC---------------------------------------CcHHhh
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY---------------------------------------APEAEQ 125 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~---------------------------------------~~~~~r 125 (632)
.+||+|++||+++|+||||||||||+++|+|+... .+..++
T Consensus 25 ~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (305)
T PRK13651 25 NVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIR 104 (305)
T ss_pred eeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccchHHHHH
Confidence 39999999999999999999999999999875211 012356
Q ss_pred cceEEEcccC--cccccccccccccccCCC--CCC----HHHHHHHHHHccch-h----hHhhCCcccccccc-------
Q 047286 126 EKIGLVSKEP--IFLFCDFNEGQYIPYGKQ--NAS----DEHIRPAVQLANAE-K----SIDKLPLGLDTVVA------- 185 (632)
Q Consensus 126 ~~i~~v~Q~~--~~~~~~~~~~~~i~~~~~--~~~----~~~~~~~~~~~~l~-~----~i~~l~~g~~~~v~------- 185 (632)
+.+|||+|+| .+|..++.+ |+.++.. ... .+++.++++.+++. + ....||+|++++++
T Consensus 105 ~~ig~v~Q~~~~~l~~~tv~e--~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~aL~~ 182 (305)
T PRK13651 105 RRVGVVFQFAEYQLFEQTIEK--DIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAM 182 (305)
T ss_pred hceEEEeeCcccccccccHHH--HHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHHh
Confidence 7899999986 445555555 6666532 122 34567778888874 3 46678899988873
Q ss_pred ----------cCCCCHHHHHHHHHHHHHHh-CCceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhcC
Q 047286 186 ----------TNAVDAQSERIVQAAMVKLV-TNQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIED 246 (632)
Q Consensus 186 ----------ts~LD~~~~~~i~~~l~~~~-~~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~~ 246 (632)
|++||+.+++.+.+.|+++. .+.|+|++||+++.+. .||||++|++|++++.|+++++...
T Consensus 183 ~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 183 EPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999885 4789999999998764 5999999999999999999998654
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-22 Score=211.50 Aligned_cols=171 Identities=24% Similarity=0.330 Sum_probs=130.5
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC---------------c---HHhhcceEEEcccCc-ccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA---------------P---EAEQEKIGLVSKEPI-FLFCDFNEG 145 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~---------------~---~~~r~~i~~v~Q~~~-~~~~~~~~~ 145 (632)
.+||+|++||+++|+|+||||||||+++|.|+.... . ...|++++||+|+|. .++..++..
T Consensus 33 ~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~ 112 (327)
T PRK11308 33 GVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVG 112 (327)
T ss_pred eeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHH
Confidence 399999999999999999999999999998653211 1 124678999999984 233333322
Q ss_pred ccccc------CC-CCCCHHHHHHHHHHccchh-----hHhhCCcccccccc-----------------cCCCCHHHHHH
Q 047286 146 QYIPY------GK-QNASDEHIRPAVQLANAEK-----SIDKLPLGLDTVVA-----------------TNAVDAQSERI 196 (632)
Q Consensus 146 ~~i~~------~~-~~~~~~~~~~~~~~~~l~~-----~i~~l~~g~~~~v~-----------------ts~LD~~~~~~ 196 (632)
+++.. +. .....+++.++++.+++.+ ...+||+|+.++++ |++||+.+++.
T Consensus 113 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~ 192 (327)
T PRK11308 113 QILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQ 192 (327)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHH
Confidence 23321 10 1112345677888887742 34578889888873 99999999999
Q ss_pred HHHHHHHHhC--CceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcCCCcHHHHHH
Q 047286 197 VQAAMVKLVT--NQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLV 255 (632)
Q Consensus 197 i~~~l~~~~~--~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~ 255 (632)
+++.|+++.+ +.|+|+|||++..+.. ||+|++|++|+|++.|+.+++.+++...|.+..
T Consensus 193 i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g~~~~~~~~p~hpyt~~l 254 (327)
T PRK11308 193 VLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQIFNNPRHPYTQAL 254 (327)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhcCCCCHHHHHH
Confidence 9999999854 7899999999999975 999999999999999999999988777787543
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-22 Score=204.32 Aligned_cols=165 Identities=21% Similarity=0.291 Sum_probs=127.6
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCC--C-----C---------------cHHhhcceEEEcccCccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRF--Y-----A---------------PEAEQEKIGLVSKEPIFLFCDF 142 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~--~-----~---------------~~~~r~~i~~v~Q~~~~~~~~~ 142 (632)
.+||+|++||+++|+||||||||||+++|.|... + . ....++.++|++|++.++..++
T Consensus 30 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv 109 (259)
T PRK14274 30 NINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFPQSI 109 (259)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCcccccCH
Confidence 3999999999999999999999999999987532 1 0 1134567999999998777665
Q ss_pred ccccccccCCC--C-CC----HHHHHHHHHHccch--------hhHhhCCccccccc-----------------ccCCCC
Q 047286 143 NEGQYIPYGKQ--N-AS----DEHIRPAVQLANAE--------KSIDKLPLGLDTVV-----------------ATNAVD 190 (632)
Q Consensus 143 ~~~~~i~~~~~--~-~~----~~~~~~~~~~~~l~--------~~i~~l~~g~~~~v-----------------~ts~LD 190 (632)
.+ |+.++.. . .. .+++.++++..++. .....||+|+.+++ +|++||
T Consensus 110 ~e--nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD 187 (259)
T PRK14274 110 FD--NVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALD 187 (259)
T ss_pred HH--HHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 55 5554321 1 11 22345566666653 34567888988777 399999
Q ss_pred HHHHHHHHHHHHHHhCCceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcCCCcHH
Q 047286 191 AQSERIVQAAMVKLVTNQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIEDPEGAY 251 (632)
Q Consensus 191 ~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~~~~~~ 251 (632)
+.++..+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++..++...|
T Consensus 188 ~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~ 249 (259)
T PRK14274 188 PVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMFSNPDDQR 249 (259)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHhhCCCCHH
Confidence 99999999999998777899999999998764 99999999999999999999876544433
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-22 Score=204.57 Aligned_cols=165 Identities=19% Similarity=0.332 Sum_probs=129.0
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC------C----------------cHHhhcceEEEcccCccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY------A----------------PEAEQEKIGLVSKEPIFLFCDF 142 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~------~----------------~~~~r~~i~~v~Q~~~~~~~~~ 142 (632)
.+||+|++||+++|+||||||||||+++|+|+... . ....++.++|++|++.+|..++
T Consensus 22 ~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv 101 (251)
T PRK14251 22 GISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSV 101 (251)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCccCCCcH
Confidence 39999999999999999999999999999976420 0 0124567999999998776666
Q ss_pred ccccccccCCC--C-C----CHHHHHHHHHHccc--------hhhHhhCCcccccccc-----------------cCCCC
Q 047286 143 NEGQYIPYGKQ--N-A----SDEHIRPAVQLANA--------EKSIDKLPLGLDTVVA-----------------TNAVD 190 (632)
Q Consensus 143 ~~~~~i~~~~~--~-~----~~~~~~~~~~~~~l--------~~~i~~l~~g~~~~v~-----------------ts~LD 190 (632)
.+ |+.++.. . . ..+++.++++..++ +.....||+|..++++ |++||
T Consensus 102 ~e--nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD 179 (251)
T PRK14251 102 YD--NVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALD 179 (251)
T ss_pred HH--HHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCC
Confidence 55 5554311 1 1 12345666776665 3346789999988773 89999
Q ss_pred HHHHHHHHHHHHHHhCCceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcCCCcHH
Q 047286 191 AQSERIVQAAMVKLVTNQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIEDPEGAY 251 (632)
Q Consensus 191 ~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~~~~~~ 251 (632)
+.+++.+.+.|+++.++.|+|++||+++.+.. ||+|++|++|++++.|+++++...+...|
T Consensus 180 ~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~ 241 (251)
T PRK14251 180 PISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMFIAPKKQI 241 (251)
T ss_pred HHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHHhCCCCHH
Confidence 99999999999998777899999999998765 99999999999999999999876544444
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-22 Score=204.65 Aligned_cols=165 Identities=22% Similarity=0.344 Sum_probs=128.6
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC-------C---------------cHHhhcceEEEcccCccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY-------A---------------PEAEQEKIGLVSKEPIFLFCDF 142 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~-------~---------------~~~~r~~i~~v~Q~~~~~~~~~ 142 (632)
.+||+|++||+++|+||||||||||+++|.|+... . ....++.++|++|++.+|..++
T Consensus 30 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv 109 (258)
T PRK14268 30 NVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSI 109 (258)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccCcccH
Confidence 39999999999999999999999999999875321 0 0123567999999998776555
Q ss_pred ccccccccCCC--CCC----HHHHHHHHHHccc--------hhhHhhCCcccccccc-----------------cCCCCH
Q 047286 143 NEGQYIPYGKQ--NAS----DEHIRPAVQLANA--------EKSIDKLPLGLDTVVA-----------------TNAVDA 191 (632)
Q Consensus 143 ~~~~~i~~~~~--~~~----~~~~~~~~~~~~l--------~~~i~~l~~g~~~~v~-----------------ts~LD~ 191 (632)
.+ |+.++.. ... .+++.++++.+++ +.....||+|+.++++ |++||+
T Consensus 110 ~e--nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~ 187 (258)
T PRK14268 110 YD--NVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDP 187 (258)
T ss_pred HH--HHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCH
Confidence 55 5554311 112 2345667776665 3346789999988873 999999
Q ss_pred HHHHHHHHHHHHHhCCceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcCCCcHH
Q 047286 192 QSERIVQAAMVKLVTNQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIEDPEGAY 251 (632)
Q Consensus 192 ~~~~~i~~~l~~~~~~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~~~~~~ 251 (632)
.+++.+.+.|+++.++.|+|++||+++.+.. ||++++|++|++++.|+++++...+...|
T Consensus 188 ~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~ 248 (258)
T PRK14268 188 ISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFHNPREKS 248 (258)
T ss_pred HHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCCCCHH
Confidence 9999999999998767899999999998854 99999999999999999999976544443
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.4e-22 Score=201.45 Aligned_cols=167 Identities=23% Similarity=0.378 Sum_probs=131.0
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC---------------CcHHhhcceEEEcccCcccccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY---------------APEAEQEKIGLVSKEPIFLFCDFNEGQYIP 149 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~---------------~~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~ 149 (632)
.+||++++|++++|+||||||||||+++|.|.... .+...++.++|++|++.++..++.+ |+.
T Consensus 21 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~tv~e--~l~ 98 (241)
T PRK14250 21 DISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKD--NIE 98 (241)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhchhhHHH--HHh
Confidence 39999999999999999999999999999865321 1123467899999999877655555 555
Q ss_pred cCCC--CCCHHHHHHHHHHccch-h----hHhhCCccccccc-----------------ccCCCCHHHHHHHHHHHHHHh
Q 047286 150 YGKQ--NASDEHIRPAVQLANAE-K----SIDKLPLGLDTVV-----------------ATNAVDAQSERIVQAAMVKLV 205 (632)
Q Consensus 150 ~~~~--~~~~~~~~~~~~~~~l~-~----~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l~~~~ 205 (632)
++.. ....+++.++++..++. + ....||+|..+++ +|++||+.+++.+.+.|+++.
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 178 (241)
T PRK14250 99 YGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLK 178 (241)
T ss_pred cchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 4321 12245667778887774 2 3567889988877 399999999999999999885
Q ss_pred C--CceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcCCCcHHHH
Q 047286 206 T--NQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIEDPEGAYSQ 253 (632)
Q Consensus 206 ~--~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~~~~~~~~ 253 (632)
+ +.|+|++||+++.+.. ||+|++|++|++++.|+++++...+...+..
T Consensus 179 ~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~ 229 (241)
T PRK14250 179 NKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVTK 229 (241)
T ss_pred HhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCCCcHHHH
Confidence 3 7899999999998765 9999999999999999999987654444443
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-22 Score=202.69 Aligned_cols=161 Identities=24% Similarity=0.375 Sum_probs=124.9
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCc-------------HHhhcceEEEcccCcccc-ccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAP-------------EAEQEKIGLVSKEPIFLF-CDFNEGQYIPY 150 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~-------------~~~r~~i~~v~Q~~~~~~-~~~~~~~~i~~ 150 (632)
.+||++++|++++|+||||||||||+++|.|+..... ...++.++|++|++.++. .++.+ |+.+
T Consensus 20 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e--~l~~ 97 (239)
T cd03296 20 DVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFD--NVAF 97 (239)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHH--HHhh
Confidence 3999999999999999999999999999986532110 012457999999987664 35554 5654
Q ss_pred CCC--CC----C----HHHHHHHHHHccchh----hHhhCCcccccccc-----------------cCCCCHHHHHHHHH
Q 047286 151 GKQ--NA----S----DEHIRPAVQLANAEK----SIDKLPLGLDTVVA-----------------TNAVDAQSERIVQA 199 (632)
Q Consensus 151 ~~~--~~----~----~~~~~~~~~~~~l~~----~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~ 199 (632)
+.. .. . .+++.++++..++.+ .+..||.|+.++++ |++||+.+++.+.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~ 177 (239)
T cd03296 98 GLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRR 177 (239)
T ss_pred hhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 321 00 1 234566777777653 45678999988873 99999999999999
Q ss_pred HHHHHhC--CceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcCC
Q 047286 200 AMVKLVT--NQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIEDP 247 (632)
Q Consensus 200 ~l~~~~~--~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~~ 247 (632)
.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++.+.+
T Consensus 178 ~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 228 (239)
T cd03296 178 WLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDHP 228 (239)
T ss_pred HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhcCC
Confidence 9999853 6899999999998754 9999999999999999999987543
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=99.88 E-value=4e-22 Score=199.65 Aligned_cols=160 Identities=43% Similarity=0.625 Sum_probs=124.2
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC---------------CcHHhhcceEEEcccCcccccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY---------------APEAEQEKIGLVSKEPIFLFCDFNEGQYIP 149 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~---------------~~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~ 149 (632)
.+||++++|++++|+||||||||||+++|.|.... .+...++.++|++|++.++..++.+ |+.
T Consensus 21 ~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e--~l~ 98 (238)
T cd03249 21 GLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAE--NIR 98 (238)
T ss_pred ceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhhhhHHH--Hhh
Confidence 39999999999999999999999999999865321 1122356799999999877666555 666
Q ss_pred cCCCCCCHHHHHHHHHHccchhhH---------------hhCCccccccc-----------------ccCCCCHHHHHHH
Q 047286 150 YGKQNASDEHIRPAVQLANAEKSI---------------DKLPLGLDTVV-----------------ATNAVDAQSERIV 197 (632)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~l~~~i---------------~~l~~g~~~~v-----------------~ts~LD~~~~~~i 197 (632)
++......+++.+.++..++.+.+ ..||+|+.+++ +|++||+.+++.+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l 178 (238)
T cd03249 99 YGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLV 178 (238)
T ss_pred ccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHH
Confidence 654333344455555555544433 45666666655 3899999999999
Q ss_pred HHHHHHHhCCceEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHhcC
Q 047286 198 QAAMVKLVTNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIED 246 (632)
Q Consensus 198 ~~~l~~~~~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~~ 246 (632)
.+.|+++.+++|+|++||+++.+..||++++|++|++++.|+.+++...
T Consensus 179 ~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (238)
T cd03249 179 QEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQ 227 (238)
T ss_pred HHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhc
Confidence 9999988777899999999998888999999999999999998888654
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-22 Score=208.62 Aligned_cols=160 Identities=26% Similarity=0.386 Sum_probs=126.6
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC-----------------cHHhhcceEEEcccC--cccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA-----------------PEAEQEKIGLVSKEP--IFLFCDFNEG 145 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~-----------------~~~~r~~i~~v~Q~~--~~~~~~~~~~ 145 (632)
.+||+|++||+++|+||||||||||+++|+|+.... +...++++||++|+| .++..++.+
T Consensus 25 ~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e- 103 (287)
T PRK13637 25 NVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEK- 103 (287)
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccHHH-
Confidence 399999999999999999999999999998653210 123567899999997 345556655
Q ss_pred cccccCCC--CCC----HHHHHHHHHHccch------hhHhhCCcccccccc-----------------cCCCCHHHHHH
Q 047286 146 QYIPYGKQ--NAS----DEHIRPAVQLANAE------KSIDKLPLGLDTVVA-----------------TNAVDAQSERI 196 (632)
Q Consensus 146 ~~i~~~~~--~~~----~~~~~~~~~~~~l~------~~i~~l~~g~~~~v~-----------------ts~LD~~~~~~ 196 (632)
|+.++.. ..+ .+++.++++.+++. ..+..||+|+.++++ |++||+.+++.
T Consensus 104 -~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~ 182 (287)
T PRK13637 104 -DIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDE 182 (287)
T ss_pred -HHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHH
Confidence 5655421 122 23567788888774 336778999988873 99999999999
Q ss_pred HHHHHHHHhC--CceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhcC
Q 047286 197 VQAAMVKLVT--NQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIED 246 (632)
Q Consensus 197 i~~~l~~~~~--~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~~ 246 (632)
+.+.|+++.+ +.|+|++||+++.+. .||+|++|++|++++.|+++++...
T Consensus 183 l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 235 (287)
T PRK13637 183 ILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFKE 235 (287)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999853 789999999999875 5999999999999999999998653
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=99.88 E-value=9e-23 Score=202.83 Aligned_cols=157 Identities=24% Similarity=0.360 Sum_probs=123.1
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCC-----CCC-----------------cHHhhcceEEEcccCccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFR-----FYA-----------------PEAEQEKIGLVSKEPIFLFCDF 142 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~-----~~~-----------------~~~~r~~i~~v~Q~~~~~~~~~ 142 (632)
.+||++++||+++|+||||||||||+++|.|+. ... ....++.++|++|++.++..++
T Consensus 18 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv 97 (227)
T cd03260 18 DISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSI 97 (227)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchhccccH
Confidence 399999999999999999999999999998764 211 1123567999999998764455
Q ss_pred ccccccccCCC--C-C----CHHHHHHHHHHccchhh------HhhCCccccccc-----------------ccCCCCHH
Q 047286 143 NEGQYIPYGKQ--N-A----SDEHIRPAVQLANAEKS------IDKLPLGLDTVV-----------------ATNAVDAQ 192 (632)
Q Consensus 143 ~~~~~i~~~~~--~-~----~~~~~~~~~~~~~l~~~------i~~l~~g~~~~v-----------------~ts~LD~~ 192 (632)
.+ |+.++.. . . ..+++.++++..++.+. ...||+|+.+++ +|++||+.
T Consensus 98 ~e--~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~ 175 (227)
T cd03260 98 YD--NVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPI 175 (227)
T ss_pred HH--HHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHH
Confidence 44 5554311 1 1 13456777888777543 367888988877 39999999
Q ss_pred HHHHHHHHHHHHhCCceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHH
Q 047286 193 SERIVQAAMVKLVTNQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDEL 243 (632)
Q Consensus 193 ~~~~i~~~l~~~~~~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el 243 (632)
+++.+.+.|+++.++.|+|++||+++.+. .||++++|++|++++.|+++++
T Consensus 176 ~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 176 STAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred HHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence 99999999999865589999999999876 4999999999999999987653
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.4e-23 Score=211.39 Aligned_cols=160 Identities=18% Similarity=0.294 Sum_probs=126.8
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC--------------cHHhhcceEEEcccCccccc-ccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA--------------PEAEQEKIGLVSKEPIFLFC-DFNEGQYIP 149 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~--------------~~~~r~~i~~v~Q~~~~~~~-~~~~~~~i~ 149 (632)
.+||+|++||+++|+||||||||||+++|+|+...+ +...++.+||++|++.++.. ++.+ |+.
T Consensus 11 ~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e--~l~ 88 (302)
T TIGR01188 11 GVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRE--NLE 88 (302)
T ss_pred eeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHH--HHH
Confidence 399999999999999999999999999998653211 12346789999999876543 4444 554
Q ss_pred cCC--CCC----CHHHHHHHHHHccch----hhHhhCCccccccc-----------------ccCCCCHHHHHHHHHHHH
Q 047286 150 YGK--QNA----SDEHIRPAVQLANAE----KSIDKLPLGLDTVV-----------------ATNAVDAQSERIVQAAMV 202 (632)
Q Consensus 150 ~~~--~~~----~~~~~~~~~~~~~l~----~~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l~ 202 (632)
+.. ... ..+++.++++.+++. ..+..||+|+++++ +|++||+.+++.+++.|+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~ 168 (302)
T TIGR01188 89 MMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIR 168 (302)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHH
Confidence 421 111 134567788888764 35678999999888 399999999999999999
Q ss_pred HHh-CCceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcC
Q 047286 203 KLV-TNQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIED 246 (632)
Q Consensus 203 ~~~-~~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~ 246 (632)
++. ++.|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 169 ~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 169 ALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred HHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 985 47899999999998865 999999999999999999998643
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-22 Score=215.08 Aligned_cols=160 Identities=18% Similarity=0.290 Sum_probs=128.2
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC---------------CcHHhhcceEEEcccCccc-cccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY---------------APEAEQEKIGLVSKEPIFL-FCDFNEGQYI 148 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~---------------~~~~~r~~i~~v~Q~~~~~-~~~~~~~~~i 148 (632)
.+||++++||+++|+||||||||||+|+|.|+... .+.+.+++++||+|++.++ ..+..+ |+
T Consensus 21 ~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e--~v 98 (402)
T PRK09536 21 GVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQ--VV 98 (402)
T ss_pred eeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHH--HH
Confidence 39999999999999999999999999999865221 2234567899999998753 334444 55
Q ss_pred ccCCC----------CCCHHHHHHHHHHccchh----hHhhCCccccccc-----------------ccCCCCHHHHHHH
Q 047286 149 PYGKQ----------NASDEHIRPAVQLANAEK----SIDKLPLGLDTVV-----------------ATNAVDAQSERIV 197 (632)
Q Consensus 149 ~~~~~----------~~~~~~~~~~~~~~~l~~----~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i 197 (632)
.++.. ....++++++++..++.+ .+.+||+|+++++ +|++||+.++..+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l 178 (402)
T PRK09536 99 EMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRT 178 (402)
T ss_pred HhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHH
Confidence 54421 112345778888887753 4678999999888 3999999999999
Q ss_pred HHHHHHHh-CCceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhcC
Q 047286 198 QAAMVKLV-TNQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIED 246 (632)
Q Consensus 198 ~~~l~~~~-~~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~~ 246 (632)
++.|+++. ++.|+|++||+++.+. .|||+++|++|++++.|++++++..
T Consensus 179 ~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~~ 229 (402)
T PRK09536 179 LELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTA 229 (402)
T ss_pred HHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhCc
Confidence 99999986 4789999999999985 5999999999999999999998754
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-22 Score=214.61 Aligned_cols=165 Identities=19% Similarity=0.322 Sum_probs=130.3
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCc-------------HHhhcceEEEcccCccccc-cccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAP-------------EAEQEKIGLVSKEPIFLFC-DFNEGQYIPY 150 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~-------------~~~r~~i~~v~Q~~~~~~~-~~~~~~~i~~ 150 (632)
.+||++++|++++|+||||||||||+++|.|+...+. ...++.++|++|++.+|.. ++.+ |+.+
T Consensus 21 ~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~e--ni~~ 98 (369)
T PRK11000 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAE--NMSF 98 (369)
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHH--HHHh
Confidence 3999999999999999999999999999987632110 1135679999999877643 5544 6765
Q ss_pred CCC--CCC----HHHHHHHHHHccchh----hHhhCCcccccccc-----------------cCCCCHHHHHHHHHHHHH
Q 047286 151 GKQ--NAS----DEHIRPAVQLANAEK----SIDKLPLGLDTVVA-----------------TNAVDAQSERIVQAAMVK 203 (632)
Q Consensus 151 ~~~--~~~----~~~~~~~~~~~~l~~----~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~~l~~ 203 (632)
+.. ... .+++.++++..++.+ .+.+||+|++++++ |++||+.+++.+.+.|++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~ 178 (369)
T PRK11000 99 GLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISR 178 (369)
T ss_pred HHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 422 111 245677888888754 45678899988883 999999999999999998
Q ss_pred HhC--CceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhcCCCcHH
Q 047286 204 LVT--NQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIEDPEGAY 251 (632)
Q Consensus 204 ~~~--~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~~~~~~~ 251 (632)
+.+ +.|+|++||+++.+. .||+|++|++|++++.|+++++...+...+
T Consensus 179 l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p~~~~ 229 (369)
T PRK11000 179 LHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPANRF 229 (369)
T ss_pred HHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcccHH
Confidence 853 789999999998875 499999999999999999999987655443
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-22 Score=212.62 Aligned_cols=165 Identities=20% Similarity=0.365 Sum_probs=128.9
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC---------------cH---HhhcceEEEcccCcccc-cccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA---------------PE---AEQEKIGLVSKEPIFLF-CDFNEG 145 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~---------------~~---~~r~~i~~v~Q~~~~~~-~~~~~~ 145 (632)
.+||+|++||+++|+||||||||||+++|.|+.... +. ..+++++|++|++.++. .++.+
T Consensus 23 ~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~e- 101 (343)
T PRK11153 23 NVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFD- 101 (343)
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHH-
Confidence 399999999999999999999999999998653211 11 13578999999998664 35544
Q ss_pred cccccCCC--CCC----HHHHHHHHHHccchh----hHhhCCccccccc-----------------ccCCCCHHHHHHHH
Q 047286 146 QYIPYGKQ--NAS----DEHIRPAVQLANAEK----SIDKLPLGLDTVV-----------------ATNAVDAQSERIVQ 198 (632)
Q Consensus 146 ~~i~~~~~--~~~----~~~~~~~~~~~~l~~----~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~ 198 (632)
|+.++.. ..+ .+++.++++..++.+ ...+||+|+.+++ +|++||+.+++.+.
T Consensus 102 -ni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~ 180 (343)
T PRK11153 102 -NVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSIL 180 (343)
T ss_pred -HHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence 5654311 111 245667778777654 4567899998888 39999999999999
Q ss_pred HHHHHHhC--CceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcCCCcHH
Q 047286 199 AAMVKLVT--NQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIEDPEGAY 251 (632)
Q Consensus 199 ~~l~~~~~--~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~~~~~~ 251 (632)
+.|+++.+ +.|+|++||+++.+.. ||++++|++|++++.|+++++...+...+
T Consensus 181 ~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~ 236 (343)
T PRK11153 181 ELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSHPKHPL 236 (343)
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCcHH
Confidence 99999853 7899999999998865 99999999999999999999976644433
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-22 Score=203.93 Aligned_cols=163 Identities=22% Similarity=0.301 Sum_probs=126.3
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCc----------------------HHhhcceEEEcccCccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAP----------------------EAEQEKIGLVSKEPIFLFCDF 142 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~----------------------~~~r~~i~~v~Q~~~~~~~~~ 142 (632)
.+||++++||+++|+||||||||||+++|.|+....| ..+++.++|++|++.+|..++
T Consensus 23 ~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv 102 (252)
T PRK14239 23 SVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFPMSI 102 (252)
T ss_pred eeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccCcCcH
Confidence 3999999999999999999999999999987522111 123567999999998776666
Q ss_pred ccccccccCC---CCC----CHHHHHHHHHHccc--------hhhHhhCCccccccc-----------------ccCCCC
Q 047286 143 NEGQYIPYGK---QNA----SDEHIRPAVQLANA--------EKSIDKLPLGLDTVV-----------------ATNAVD 190 (632)
Q Consensus 143 ~~~~~i~~~~---~~~----~~~~~~~~~~~~~l--------~~~i~~l~~g~~~~v-----------------~ts~LD 190 (632)
.+ |+.++. ... ..+++.++++.+++ +.....||.|..+++ +|++||
T Consensus 103 ~e--nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 180 (252)
T PRK14239 103 YE--NVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALD 180 (252)
T ss_pred HH--HHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccC
Confidence 55 555321 111 12344556666654 234567899988877 399999
Q ss_pred HHHHHHHHHHHHHHhCCceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhcCCCc
Q 047286 191 AQSERIVQAAMVKLVTNQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIEDPEG 249 (632)
Q Consensus 191 ~~~~~~i~~~l~~~~~~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~~~~~ 249 (632)
+.+++.+.+.|+++.+++|+|++||+++.+. .||++++|++|++++.|+++++.+.+..
T Consensus 181 ~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~ 240 (252)
T PRK14239 181 PISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFMNPKH 240 (252)
T ss_pred HHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCC
Confidence 9999999999999876789999999998875 5999999999999999999998765443
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-22 Score=213.64 Aligned_cols=166 Identities=23% Similarity=0.334 Sum_probs=131.5
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC-------------cHHhhcceEEEcccCccccc-cccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA-------------PEAEQEKIGLVSKEPIFLFC-DFNEGQYIPY 150 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~-------------~~~~r~~i~~v~Q~~~~~~~-~~~~~~~i~~ 150 (632)
.+||++++||+++|+||||||||||+++|.|+...+ ....++.+|||+|++.+|.. ++.+ |+.+
T Consensus 37 ~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~e--Ni~~ 114 (377)
T PRK11607 37 DVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQ--NIAF 114 (377)
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHH--HHHH
Confidence 399999999999999999999999999998763221 11246789999999987653 5544 7776
Q ss_pred CCC--CCC----HHHHHHHHHHccchh----hHhhCCcccccccc-----------------cCCCCHHHHHHHHHHHHH
Q 047286 151 GKQ--NAS----DEHIRPAVQLANAEK----SIDKLPLGLDTVVA-----------------TNAVDAQSERIVQAAMVK 203 (632)
Q Consensus 151 ~~~--~~~----~~~~~~~~~~~~l~~----~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~~l~~ 203 (632)
+.. ... .+++.++++..++.+ ....||+|++++++ +++||+.+++.+.+.|++
T Consensus 115 ~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~ 194 (377)
T PRK11607 115 GLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVD 194 (377)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 532 112 345667778777754 45678889988884 899999999999999888
Q ss_pred Hh--CCceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhcCCCcHHH
Q 047286 204 LV--TNQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIEDPEGAYS 252 (632)
Q Consensus 204 ~~--~~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~~~~~~~~ 252 (632)
+. .+.|+|++||+.+++. .||+|++|++|++++.|+++++...+...|.
T Consensus 195 l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p~~~~~ 246 (377)
T PRK11607 195 ILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRYS 246 (377)
T ss_pred HHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCCccHHH
Confidence 74 3689999999999865 5999999999999999999999887665443
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-22 Score=210.40 Aligned_cols=171 Identities=19% Similarity=0.269 Sum_probs=129.8
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC------------------cHH---hh-cceEEEcccCc-ccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA------------------PEA---EQ-EKIGLVSKEPI-FLFCD 141 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~------------------~~~---~r-~~i~~v~Q~~~-~~~~~ 141 (632)
.+||+|++||+++|+|+||||||||+++|.|+.... ..+ .| +.|+||+|++. .++..
T Consensus 34 ~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~ 113 (330)
T PRK09473 34 DLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPY 113 (330)
T ss_pred eeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCC
Confidence 399999999999999999999999999998654221 011 12 47999999984 23333
Q ss_pred cccccccccC---CCCCC----HHHHHHHHHHccchh-------hHhhCCcccccccc-----------------cCCCC
Q 047286 142 FNEGQYIPYG---KQNAS----DEHIRPAVQLANAEK-------SIDKLPLGLDTVVA-----------------TNAVD 190 (632)
Q Consensus 142 ~~~~~~i~~~---~~~~~----~~~~~~~~~~~~l~~-------~i~~l~~g~~~~v~-----------------ts~LD 190 (632)
++..+++... ....+ .+++.++++.+++.+ ...+||+|+.++++ |++||
T Consensus 114 ~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD 193 (330)
T PRK09473 114 MRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALD 193 (330)
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCC
Confidence 3322233211 01112 234566777777642 45678889988883 99999
Q ss_pred HHHHHHHHHHHHHHhC--CceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcCCCcHHHHHH
Q 047286 191 AQSERIVQAAMVKLVT--NQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLV 255 (632)
Q Consensus 191 ~~~~~~i~~~l~~~~~--~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~ 255 (632)
+.++..+.+.|+++.+ +.|+|+||||+..+.. ||+|++|++|+|++.|+++++.+.+.+.|.+..
T Consensus 194 ~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~~~i~~~p~~pyt~~l 261 (330)
T PRK09473 194 VTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDVFYQPSHPYSIGL 261 (330)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHH
Confidence 9999999999999854 7899999999999864 999999999999999999999988888887643
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.1e-22 Score=210.59 Aligned_cols=170 Identities=22% Similarity=0.282 Sum_probs=129.8
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC----C---------------cHHh----hcceEEEcccCcc-ccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY----A---------------PEAE----QEKIGLVSKEPIF-LFC 140 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~----~---------------~~~~----r~~i~~v~Q~~~~-~~~ 140 (632)
.+||+|++||+++|+|+||||||||+++|.|+... . +... ++.++||+|++.. ++.
T Consensus 25 ~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p 104 (330)
T PRK15093 25 RVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDP 104 (330)
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcchhcCc
Confidence 39999999999999999999999999999876421 0 1111 2469999999863 333
Q ss_pred ccccccccccC-----C-----CC--CCHHHHHHHHHHccchh-------hHhhCCcccccccc----------------
Q 047286 141 DFNEGQYIPYG-----K-----QN--ASDEHIRPAVQLANAEK-------SIDKLPLGLDTVVA---------------- 185 (632)
Q Consensus 141 ~~~~~~~i~~~-----~-----~~--~~~~~~~~~~~~~~l~~-------~i~~l~~g~~~~v~---------------- 185 (632)
..+..+++... . .. ...+++.++++.+++.+ ...+||+|+.++++
T Consensus 105 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDE 184 (330)
T PRK15093 105 SERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADE 184 (330)
T ss_pred cccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeC
Confidence 33222233210 0 00 11345678888888753 34578899988883
Q ss_pred -cCCCCHHHHHHHHHHHHHHhC--CceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcCCCcHHHHH
Q 047286 186 -TNAVDAQSERIVQAAMVKLVT--NQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIEDPEGAYSQL 254 (632)
Q Consensus 186 -ts~LD~~~~~~i~~~l~~~~~--~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~~~~~~~~~ 254 (632)
|++||+.++..+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|+|++.|+.+++..++...|.+.
T Consensus 185 Pts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive~g~~~~i~~~p~~~y~~~ 257 (330)
T PRK15093 185 PTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKELVTTPHHPYTQA 257 (330)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHH
Confidence 999999999999999999864 7899999999999965 99999999999999999999988777788653
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-22 Score=203.61 Aligned_cols=164 Identities=21% Similarity=0.289 Sum_probs=127.7
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCC-CC---------------------cHHhhcceEEEcccCccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRF-YA---------------------PEAEQEKIGLVSKEPIFLFCDF 142 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~-~~---------------------~~~~r~~i~~v~Q~~~~~~~~~ 142 (632)
.+||++++||+++|+||||||||||+++|.|+.. .. ....++.++|++|++.++..++
T Consensus 21 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv 100 (250)
T PRK14245 21 GISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSI 100 (250)
T ss_pred eeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCccCcccH
Confidence 3899999999999999999999999999986410 00 1134567999999998776555
Q ss_pred ccccccccCCC--C-----CCHHHHHHHHHHccch--------hhHhhCCccccccc-----------------ccCCCC
Q 047286 143 NEGQYIPYGKQ--N-----ASDEHIRPAVQLANAE--------KSIDKLPLGLDTVV-----------------ATNAVD 190 (632)
Q Consensus 143 ~~~~~i~~~~~--~-----~~~~~~~~~~~~~~l~--------~~i~~l~~g~~~~v-----------------~ts~LD 190 (632)
.+ |+.++.. . ...+++.++++.+++. .....||+|+.+++ +|++||
T Consensus 101 ~~--nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD 178 (250)
T PRK14245 101 FE--NVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALD 178 (250)
T ss_pred HH--HHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 54 5544211 1 1123456777777653 33567899998877 399999
Q ss_pred HHHHHHHHHHHHHHhCCceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhcCCCcH
Q 047286 191 AQSERIVQAAMVKLVTNQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIEDPEGA 250 (632)
Q Consensus 191 ~~~~~~i~~~l~~~~~~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~~~~~~ 250 (632)
+.+++.+.+.|+++.+++|+|++||+++.+. .||++++|++|++++.|+++++.+++...
T Consensus 179 ~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~~~~~~~ 239 (250)
T PRK14245 179 PISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFTNPEKE 239 (250)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHhcCCCCh
Confidence 9999999999999877889999999999885 59999999999999999999997654433
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.3e-22 Score=203.56 Aligned_cols=165 Identities=25% Similarity=0.360 Sum_probs=127.5
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC----------------------CcHHhhcceEEEcccCccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY----------------------APEAEQEKIGLVSKEPIFLFCDF 142 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~----------------------~~~~~r~~i~~v~Q~~~~~~~~~ 142 (632)
.+||+|++||+++|+||||||||||+++|.|+... ++...++.++|++|++.+|..++
T Consensus 31 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv 110 (269)
T PRK14259 31 NVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSI 110 (269)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCccchhhH
Confidence 39999999999999999999999999999875320 11234567999999998776555
Q ss_pred ccccccccCCC--CC---CHHHHHHHHHHccc--------hhhHhhCCcccccccc-----------------cCCCCHH
Q 047286 143 NEGQYIPYGKQ--NA---SDEHIRPAVQLANA--------EKSIDKLPLGLDTVVA-----------------TNAVDAQ 192 (632)
Q Consensus 143 ~~~~~i~~~~~--~~---~~~~~~~~~~~~~l--------~~~i~~l~~g~~~~v~-----------------ts~LD~~ 192 (632)
.+ |+.++.. .. ..+++.++++.+++ +....+||.|++++++ |++||+.
T Consensus 111 ~e--nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~ 188 (269)
T PRK14259 111 YE--NIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPI 188 (269)
T ss_pred HH--HHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHH
Confidence 55 5654321 11 13445566666654 3345678999988773 9999999
Q ss_pred HHHHHHHHHHHHhCCceEEEEecCchHHhh-cCeEEEEeC-----------CeEEEecChhHHhcCCCcHH
Q 047286 193 SERIVQAAMVKLVTNQTVVIVANCLITIRN-ADCIIMVSK-----------GKIVEKGTHDELIEDPEGAY 251 (632)
Q Consensus 193 ~~~~i~~~l~~~~~~~tviiitH~~~~~~~-aD~i~vl~~-----------G~i~~~g~~~el~~~~~~~~ 251 (632)
+++.+.+.|+++.++.|+|++||+++.+.. ||++++|++ |++++.|+++++...+...|
T Consensus 189 ~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~ 259 (269)
T PRK14259 189 STLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNETKKIFNSPKQKA 259 (269)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceEEEeCCHHHHHhCcCChH
Confidence 999999999998777899999999988854 999999996 67899999999977654444
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.2e-22 Score=203.06 Aligned_cols=164 Identities=21% Similarity=0.362 Sum_probs=128.7
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCc----------------------HHhhcceEEEcccCccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAP----------------------EAEQEKIGLVSKEPIFLFCDF 142 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~----------------------~~~r~~i~~v~Q~~~~~~~~~ 142 (632)
.+||+|++||+++|+||||||||||+++|.|+..+.| ...++.++|++|++.+|..++
T Consensus 23 ~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv 102 (251)
T PRK14244 23 DINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPKSI 102 (251)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCcccccCCH
Confidence 3999999999999999999999999999987642100 023567999999998777665
Q ss_pred ccccccccCC--CC------CCHHHHHHHHHHccchh--------hHhhCCccccccc-----------------ccCCC
Q 047286 143 NEGQYIPYGK--QN------ASDEHIRPAVQLANAEK--------SIDKLPLGLDTVV-----------------ATNAV 189 (632)
Q Consensus 143 ~~~~~i~~~~--~~------~~~~~~~~~~~~~~l~~--------~i~~l~~g~~~~v-----------------~ts~L 189 (632)
.+ |+.++. .. ...+++.++++..++.+ ....||+|..+++ +|++|
T Consensus 103 ~~--ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~L 180 (251)
T PRK14244 103 YD--NVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSAL 180 (251)
T ss_pred HH--HHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence 55 554431 11 11234566777777643 3567889988877 39999
Q ss_pred CHHHHHHHHHHHHHHhCCceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcCCCcH
Q 047286 190 DAQSERIVQAAMVKLVTNQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIEDPEGA 250 (632)
Q Consensus 190 D~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~~~~~ 250 (632)
|+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++.+.+...
T Consensus 181 D~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~ 242 (251)
T PRK14244 181 DPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFKNPQSS 242 (251)
T ss_pred CHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHhcCCCCh
Confidence 999999999999998778999999999998865 9999999999999999999987664443
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-22 Score=206.99 Aligned_cols=160 Identities=24% Similarity=0.344 Sum_probs=126.4
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC-------------------cHHhhcceEEEcccC--cccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA-------------------PEAEQEKIGLVSKEP--IFLFCDFN 143 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~-------------------~~~~r~~i~~v~Q~~--~~~~~~~~ 143 (632)
.+||+|++||+++|+||||||||||+++|.|+.... ....++.++||+|+| .+|..++.
T Consensus 24 ~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~ 103 (288)
T PRK13643 24 DIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVL 103 (288)
T ss_pred eeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhcccchHH
Confidence 499999999999999999999999999998653210 123567899999987 56665665
Q ss_pred cccccccCCCC--CC----HHHHHHHHHHccch-----hhHhhCCcccccccc-----------------cCCCCHHHHH
Q 047286 144 EGQYIPYGKQN--AS----DEHIRPAVQLANAE-----KSIDKLPLGLDTVVA-----------------TNAVDAQSER 195 (632)
Q Consensus 144 ~~~~i~~~~~~--~~----~~~~~~~~~~~~l~-----~~i~~l~~g~~~~v~-----------------ts~LD~~~~~ 195 (632)
+ |+.++... .. .+++.++++..++. ..+..||+|..++++ |++||+.+++
T Consensus 104 ~--~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~ 181 (288)
T PRK13643 104 K--DVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARI 181 (288)
T ss_pred H--HHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHH
Confidence 5 66654321 12 23466777777763 335678889888773 9999999999
Q ss_pred HHHHHHHHHh-CCceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhcC
Q 047286 196 IVQAAMVKLV-TNQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIED 246 (632)
Q Consensus 196 ~i~~~l~~~~-~~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~~ 246 (632)
.+.+.|+++. ++.|+|++||+++.+. .||+|++|++|+++++|+++++...
T Consensus 182 ~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 234 (288)
T PRK13643 182 EMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQE 234 (288)
T ss_pred HHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 9999999885 4789999999999875 5999999999999999999998653
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.8e-22 Score=203.95 Aligned_cols=161 Identities=22% Similarity=0.328 Sum_probs=127.4
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC-----C-----------------cHHhhcceEEEcccCcccccccc
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY-----A-----------------PEAEQEKIGLVSKEPIFLFCDFN 143 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~-----~-----------------~~~~r~~i~~v~Q~~~~~~~~~~ 143 (632)
+||+|++|++++|+||||||||||+++|.|+... . +..+++.++|++|++.+|..++.
T Consensus 38 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~ 117 (267)
T PRK14235 38 VDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPKSIY 117 (267)
T ss_pred EEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCCCCcHH
Confidence 9999999999999999999999999999875321 0 11245679999999987765655
Q ss_pred cccccccCCC--C------CCHHHHHHHHHHccchh--------hHhhCCcccccccc-----------------cCCCC
Q 047286 144 EGQYIPYGKQ--N------ASDEHIRPAVQLANAEK--------SIDKLPLGLDTVVA-----------------TNAVD 190 (632)
Q Consensus 144 ~~~~i~~~~~--~------~~~~~~~~~~~~~~l~~--------~i~~l~~g~~~~v~-----------------ts~LD 190 (632)
+ |+.++.. . ...+++.++++.+++.+ ....||+|..++++ |++||
T Consensus 118 e--nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD 195 (267)
T PRK14235 118 E--NVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALD 195 (267)
T ss_pred H--HHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCC
Confidence 4 5654311 1 11344567777777632 35678999988873 99999
Q ss_pred HHHHHHHHHHHHHHhCCceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcCCC
Q 047286 191 AQSERIVQAAMVKLVTNQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIEDPE 248 (632)
Q Consensus 191 ~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~~~ 248 (632)
+.+++.+.+.|+++.++.|+|++||+++.+.. ||++++|++|++++.|+++++...+.
T Consensus 196 ~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~ 254 (267)
T PRK14235 196 PIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKMFTNPD 254 (267)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhCCC
Confidence 99999999999998777899999999998855 99999999999999999999875433
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.1e-22 Score=201.39 Aligned_cols=160 Identities=19% Similarity=0.312 Sum_probs=124.5
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC---------------cHH-hhcceEEEcccCccccc-ccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA---------------PEA-EQEKIGLVSKEPIFLFC-DFNEGQY 147 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~---------------~~~-~r~~i~~v~Q~~~~~~~-~~~~~~~ 147 (632)
.+||++++|++++|+||||||||||+++|.|+.... +.. .+..++|++|++.++.. ++.+ |
T Consensus 18 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~--~ 95 (236)
T cd03219 18 DVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLE--N 95 (236)
T ss_pred CceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHHH--H
Confidence 389999999999999999999999999998653211 111 24569999999876654 5554 5
Q ss_pred cccCCCC----------------CCHHHHHHHHHHccchh----hHhhCCccccccc-----------------ccCCCC
Q 047286 148 IPYGKQN----------------ASDEHIRPAVQLANAEK----SIDKLPLGLDTVV-----------------ATNAVD 190 (632)
Q Consensus 148 i~~~~~~----------------~~~~~~~~~~~~~~l~~----~i~~l~~g~~~~v-----------------~ts~LD 190 (632)
+.++... ...+++.++++..++.+ .+.+||+|+.+++ +|++||
T Consensus 96 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD 175 (236)
T cd03219 96 VMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLN 175 (236)
T ss_pred HHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 5443110 01234566777777643 4667999998887 399999
Q ss_pred HHHHHHHHHHHHHHh-CCceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcC
Q 047286 191 AQSERIVQAAMVKLV-TNQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIED 246 (632)
Q Consensus 191 ~~~~~~i~~~l~~~~-~~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~ 246 (632)
+.+++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 176 ~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 233 (236)
T cd03219 176 PEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNN 233 (236)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhccC
Confidence 999999999999886 57899999999998865 999999999999999999988643
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-22 Score=214.04 Aligned_cols=166 Identities=24% Similarity=0.351 Sum_probs=129.5
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC---------------cHH----hhcceEEEcccCcccc-ccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA---------------PEA----EQEKIGLVSKEPIFLF-CDFNE 144 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~---------------~~~----~r~~i~~v~Q~~~~~~-~~~~~ 144 (632)
.+||+|++||+++|+||||||||||+++|.|+.... +.. .+++++|++|++.+|. .++.+
T Consensus 46 ~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~e 125 (400)
T PRK10070 46 DASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLD 125 (400)
T ss_pred eEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHH
Confidence 399999999999999999999999999998653211 111 1357999999998765 35555
Q ss_pred ccccccCCC--CC----CHHHHHHHHHHccchhh----HhhCCcccccccc-----------------cCCCCHHHHHHH
Q 047286 145 GQYIPYGKQ--NA----SDEHIRPAVQLANAEKS----IDKLPLGLDTVVA-----------------TNAVDAQSERIV 197 (632)
Q Consensus 145 ~~~i~~~~~--~~----~~~~~~~~~~~~~l~~~----i~~l~~g~~~~v~-----------------ts~LD~~~~~~i 197 (632)
|+.++.. .. ..+++.++++.+++.+. ..+||+|++++++ |++||+.+++.+
T Consensus 126 --nl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l 203 (400)
T PRK10070 126 --NTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEM 203 (400)
T ss_pred --HHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHH
Confidence 6655321 11 13456778888887544 5668889888873 999999999999
Q ss_pred HHHHHHHh--CCceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhcCCCcHHH
Q 047286 198 QAAMVKLV--TNQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIEDPEGAYS 252 (632)
Q Consensus 198 ~~~l~~~~--~~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~~~~~~~~ 252 (632)
++.|+++. .++|+|++||+++.+. .||+|++|++|++++.|+++++...+...|.
T Consensus 204 ~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~~~~~v 261 (400)
T PRK10070 204 QDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYV 261 (400)
T ss_pred HHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCcccHHH
Confidence 99999885 3789999999998875 5999999999999999999999876555443
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.9e-22 Score=204.18 Aligned_cols=163 Identities=19% Similarity=0.255 Sum_probs=126.3
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCC-----C--C---------------cHHhhcceEEEcccCcccccccc
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRF-----Y--A---------------PEAEQEKIGLVSKEPIFLFCDFN 143 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~-----~--~---------------~~~~r~~i~~v~Q~~~~~~~~~~ 143 (632)
+||++++||+++|+||||||||||+++|.|+.. . . ....++.++|++|++.+|..++.
T Consensus 40 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~ 119 (268)
T PRK14248 40 ISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIY 119 (268)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCccCcccHH
Confidence 999999999999999999999999999987521 0 0 01235679999999987776655
Q ss_pred cccccccCC---CC-C---CHHHHHHHHHHccc--------hhhHhhCCccccccc-----------------ccCCCCH
Q 047286 144 EGQYIPYGK---QN-A---SDEHIRPAVQLANA--------EKSIDKLPLGLDTVV-----------------ATNAVDA 191 (632)
Q Consensus 144 ~~~~i~~~~---~~-~---~~~~~~~~~~~~~l--------~~~i~~l~~g~~~~v-----------------~ts~LD~ 191 (632)
+ |+.++. .. . .++.+.++++..++ +..+..||+|+.+++ +|++||+
T Consensus 120 e--nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~ 197 (268)
T PRK14248 120 N--NITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDP 197 (268)
T ss_pred H--HHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCH
Confidence 5 554321 11 1 12345556666654 234567899998877 3999999
Q ss_pred HHHHHHHHHHHHHhCCceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhcCCCcH
Q 047286 192 QSERIVQAAMVKLVTNQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIEDPEGA 250 (632)
Q Consensus 192 ~~~~~i~~~l~~~~~~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~~~~~~ 250 (632)
.+++.+.+.|+++.++.|+|++||+++.+. .||++++|++|++++.|+++++..++...
T Consensus 198 ~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~ 257 (268)
T PRK14248 198 ISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIFTSPKQQ 257 (268)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCCh
Confidence 999999999999876789999999999875 59999999999999999999987654433
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.7e-22 Score=202.71 Aligned_cols=162 Identities=22% Similarity=0.339 Sum_probs=125.9
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC----------------------cHHhhcceEEEcccCccccc-c
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA----------------------PEAEQEKIGLVSKEPIFLFC-D 141 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~----------------------~~~~r~~i~~v~Q~~~~~~~-~ 141 (632)
.+||++++||+++|+||||||||||+++|.|+.... +..+++.++|++|++.+|.. +
T Consensus 22 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~t 101 (253)
T PRK14267 22 GVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLT 101 (253)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccCCCCc
Confidence 399999999999999999999999999998763210 11245679999999876643 5
Q ss_pred cccccccccCC--CC--CC----HHHHHHHHHHccc--------hhhHhhCCcccccccc-----------------cCC
Q 047286 142 FNEGQYIPYGK--QN--AS----DEHIRPAVQLANA--------EKSIDKLPLGLDTVVA-----------------TNA 188 (632)
Q Consensus 142 ~~~~~~i~~~~--~~--~~----~~~~~~~~~~~~l--------~~~i~~l~~g~~~~v~-----------------ts~ 188 (632)
+.+ |+.++. .. .. .+++.++++..++ +.....||+|..++++ |++
T Consensus 102 v~e--nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~ 179 (253)
T PRK14267 102 IYD--NVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTAN 179 (253)
T ss_pred HHH--HHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCcc
Confidence 544 554421 11 01 2345666666654 3346778999988773 999
Q ss_pred CCHHHHHHHHHHHHHHhCCceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcCCC
Q 047286 189 VDAQSERIVQAAMVKLVTNQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIEDPE 248 (632)
Q Consensus 189 LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~~~ 248 (632)
||+.+++.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.+.
T Consensus 180 LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~ 240 (253)
T PRK14267 180 IDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFENPE 240 (253)
T ss_pred CCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhCCC
Confidence 9999999999999998767899999999998764 99999999999999999999876543
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.7e-22 Score=201.35 Aligned_cols=165 Identities=24% Similarity=0.324 Sum_probs=127.8
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC--------------------CcHHhhcceEEEcccCcccc-cccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY--------------------APEAEQEKIGLVSKEPIFLF-CDFN 143 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~--------------------~~~~~r~~i~~v~Q~~~~~~-~~~~ 143 (632)
.+||++++||+++|+||||||||||+++|.|.... ++..+++.++|++|++.+++ .++.
T Consensus 21 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 100 (250)
T PRK14247 21 GVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIF 100 (250)
T ss_pred cceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCCCcHH
Confidence 39999999999999999999999999999876321 01234578999999986443 3554
Q ss_pred cccccccCCC--C--CC----HHHHHHHHHHccch--------hhHhhCCcccccccc-----------------cCCCC
Q 047286 144 EGQYIPYGKQ--N--AS----DEHIRPAVQLANAE--------KSIDKLPLGLDTVVA-----------------TNAVD 190 (632)
Q Consensus 144 ~~~~i~~~~~--~--~~----~~~~~~~~~~~~l~--------~~i~~l~~g~~~~v~-----------------ts~LD 190 (632)
+ |+.++.. . .. .+++.++++.+++. ..+.+||+|+.++++ |++||
T Consensus 101 e--nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD 178 (250)
T PRK14247 101 E--NVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLD 178 (250)
T ss_pred H--HHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCC
Confidence 4 5544311 0 11 24566777777653 345778999988873 99999
Q ss_pred HHHHHHHHHHHHHHhCCceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhcCCCcHH
Q 047286 191 AQSERIVQAAMVKLVTNQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIEDPEGAY 251 (632)
Q Consensus 191 ~~~~~~i~~~l~~~~~~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~~~~~~~ 251 (632)
+.+++.+.+.|+++.++.|+|++||+++.+. .||++++|++|++++.|+++++.+.+...+
T Consensus 179 ~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~ 240 (250)
T PRK14247 179 PENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFTNPRHEL 240 (250)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHHcCCccHH
Confidence 9999999999999877889999999999885 599999999999999999999876544333
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-22 Score=210.96 Aligned_cols=160 Identities=18% Similarity=0.337 Sum_probs=125.3
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC--------------cHHhhcceEEEcccCcccccccccccccccC
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA--------------PEAEQEKIGLVSKEPIFLFCDFNEGQYIPYG 151 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~--------------~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~ 151 (632)
+||+|++|++++|+||||||||||+++|+|+...+ +...++.+||+||++.++. .++..+|+.+.
T Consensus 60 is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~-~~tv~e~l~~~ 138 (340)
T PRK13536 60 LSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDL-EFTVRENLLVF 138 (340)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCC-CCcHHHHHHHH
Confidence 99999999999999999999999999998653211 1235678999999987543 33333355431
Q ss_pred C--CCCC----HHHHHHHHHHccch----hhHhhCCccccccc-----------------ccCCCCHHHHHHHHHHHHHH
Q 047286 152 K--QNAS----DEHIRPAVQLANAE----KSIDKLPLGLDTVV-----------------ATNAVDAQSERIVQAAMVKL 204 (632)
Q Consensus 152 ~--~~~~----~~~~~~~~~~~~l~----~~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l~~~ 204 (632)
. .... .+++.++++.+++. ..+..||.|+.+++ +|++||+.+++.+++.|+++
T Consensus 139 ~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l 218 (340)
T PRK13536 139 GRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSL 218 (340)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 1 1111 23455677777764 45778999998887 39999999999999999998
Q ss_pred h-CCceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcC
Q 047286 205 V-TNQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIED 246 (632)
Q Consensus 205 ~-~~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~ 246 (632)
. +++|+|++||+++.+.. ||+|++|++|+++..|+++++.+.
T Consensus 219 ~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 219 LARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred HhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 5 47899999999999865 999999999999999999998653
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-22 Score=207.29 Aligned_cols=160 Identities=25% Similarity=0.327 Sum_probs=126.4
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC-------------------cHHhhcceEEEcccC--cccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA-------------------PEAEQEKIGLVSKEP--IFLFCDFN 143 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~-------------------~~~~r~~i~~v~Q~~--~~~~~~~~ 143 (632)
.+||+|++||+++|+||||||||||+++|+|+.... ....++.+||++|+| .+|..++.
T Consensus 25 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~ 104 (286)
T PRK13646 25 DVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVE 104 (286)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccchhhHH
Confidence 399999999999999999999999999998653210 123567899999987 45555665
Q ss_pred cccccccCCC--CCC----HHHHHHHHHHccch-h----hHhhCCcccccccc-----------------cCCCCHHHHH
Q 047286 144 EGQYIPYGKQ--NAS----DEHIRPAVQLANAE-K----SIDKLPLGLDTVVA-----------------TNAVDAQSER 195 (632)
Q Consensus 144 ~~~~i~~~~~--~~~----~~~~~~~~~~~~l~-~----~i~~l~~g~~~~v~-----------------ts~LD~~~~~ 195 (632)
+ |+.++.. ..+ .+++.++++.+++. + ....||+|..++++ |++||+.++.
T Consensus 105 e--~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~ 182 (286)
T PRK13646 105 R--EIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKR 182 (286)
T ss_pred H--HHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHH
Confidence 5 6665421 112 24456777778875 2 35678899888773 9999999999
Q ss_pred HHHHHHHHHh--CCceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhcC
Q 047286 196 IVQAAMVKLV--TNQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIED 246 (632)
Q Consensus 196 ~i~~~l~~~~--~~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~~ 246 (632)
.+.+.|+++. .+.|+|++||+++.+. .||+|++|++|++++.|+++++...
T Consensus 183 ~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 236 (286)
T PRK13646 183 QVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKD 236 (286)
T ss_pred HHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999985 3789999999999875 5999999999999999999988654
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.1e-22 Score=201.10 Aligned_cols=163 Identities=23% Similarity=0.345 Sum_probs=126.3
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC----------------------CcHHhhcceEEEcccCccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY----------------------APEAEQEKIGLVSKEPIFLFCDF 142 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~----------------------~~~~~r~~i~~v~Q~~~~~~~~~ 142 (632)
.+||+|++||+++|+||||||||||+++|.|+... +....++.++|++|++.++..+.
T Consensus 21 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~t~ 100 (250)
T PRK14240 21 KINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFPMSI 100 (250)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccCcccH
Confidence 39999999999999999999999999999875321 01124667999999988776555
Q ss_pred ccccccccCCC--C-----CCHHHHHHHHHHccc--------hhhHhhCCcccccccc-----------------cCCCC
Q 047286 143 NEGQYIPYGKQ--N-----ASDEHIRPAVQLANA--------EKSIDKLPLGLDTVVA-----------------TNAVD 190 (632)
Q Consensus 143 ~~~~~i~~~~~--~-----~~~~~~~~~~~~~~l--------~~~i~~l~~g~~~~v~-----------------ts~LD 190 (632)
.+ |+.++.. . ...+++.++++.+++ +.....||.|+.++++ |++||
T Consensus 101 ~~--ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD 178 (250)
T PRK14240 101 YD--NVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALD 178 (250)
T ss_pred HH--HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 44 5654321 1 112345556666654 2345678999988773 99999
Q ss_pred HHHHHHHHHHHHHHhCCceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcCCCc
Q 047286 191 AQSERIVQAAMVKLVTNQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIEDPEG 249 (632)
Q Consensus 191 ~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~~~~ 249 (632)
+.+++.+.+.|+++.++.|+|++||+++.+.. ||++++|++|++++.|+++++...+..
T Consensus 179 ~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~ 238 (250)
T PRK14240 179 PISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLFTNPKD 238 (250)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhCCCC
Confidence 99999999999998778899999999998765 999999999999999999998765433
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.7e-22 Score=207.41 Aligned_cols=160 Identities=21% Similarity=0.383 Sum_probs=127.6
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC--------------cHHhhcceEEEcccCccccc-ccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA--------------PEAEQEKIGLVSKEPIFLFC-DFNEGQYIP 149 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~--------------~~~~r~~i~~v~Q~~~~~~~-~~~~~~~i~ 149 (632)
.+||++++||+++|+||||||||||+++|.|+.... +...++.+||++|++.++.. ++.+ |+.
T Consensus 20 ~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e--~l~ 97 (301)
T TIGR03522 20 EVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVRE--YLQ 97 (301)
T ss_pred EeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHH--HHH
Confidence 399999999999999999999999999998653211 12356789999999876543 4444 554
Q ss_pred cCCC--CCC----HHHHHHHHHHccch----hhHhhCCccccccc-----------------ccCCCCHHHHHHHHHHHH
Q 047286 150 YGKQ--NAS----DEHIRPAVQLANAE----KSIDKLPLGLDTVV-----------------ATNAVDAQSERIVQAAMV 202 (632)
Q Consensus 150 ~~~~--~~~----~~~~~~~~~~~~l~----~~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l~ 202 (632)
+... ... .+++.++++..++. ..+..||.|+.+++ +|++||+.+++.+++.|+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~ 177 (301)
T TIGR03522 98 FIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIK 177 (301)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence 3211 111 34567778877764 45678999998887 399999999999999999
Q ss_pred HHhCCceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcC
Q 047286 203 KLVTNQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIED 246 (632)
Q Consensus 203 ~~~~~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~ 246 (632)
++.+++|+|++||+++.+.. ||||++|++|+++..|+.+++...
T Consensus 178 ~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 178 NIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred HhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 98778999999999998865 999999999999999999998653
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.9e-22 Score=207.12 Aligned_cols=160 Identities=21% Similarity=0.282 Sum_probs=126.2
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC-------------C------------------cHHhhcceEEEcc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY-------------A------------------PEAEQEKIGLVSK 133 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~-------------~------------------~~~~r~~i~~v~Q 133 (632)
.+||+|++||+++|+||||||||||+++|+|+... . ...++++++||+|
T Consensus 44 ~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q 123 (320)
T PRK13631 44 NISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQ 123 (320)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhcEEEEEE
Confidence 39999999999999999999999999999865211 0 1235678999999
Q ss_pred cC--cccccccccccccccCCC--CCCH----HHHHHHHHHccch-h----hHhhCCcccccccc---------------
Q 047286 134 EP--IFLFCDFNEGQYIPYGKQ--NASD----EHIRPAVQLANAE-K----SIDKLPLGLDTVVA--------------- 185 (632)
Q Consensus 134 ~~--~~~~~~~~~~~~i~~~~~--~~~~----~~~~~~~~~~~l~-~----~i~~l~~g~~~~v~--------------- 185 (632)
+| .+|..++.+ |+.++.. ..+. +++.++++.+++. . ....||+|..++++
T Consensus 124 ~~~~~l~~~tv~e--ni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLD 201 (320)
T PRK13631 124 FPEYQLFKDTIEK--DIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFD 201 (320)
T ss_pred CchhccccchHHH--HHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 98 466666655 6666521 1222 3455667777774 2 35578899988873
Q ss_pred --cCCCCHHHHHHHHHHHHHHh-CCceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhcC
Q 047286 186 --TNAVDAQSERIVQAAMVKLV-TNQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIED 246 (632)
Q Consensus 186 --ts~LD~~~~~~i~~~l~~~~-~~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~~ 246 (632)
|++||+.+++.+.+.|.++. ++.|+|++||+++.+. .||+|++|++|++++.|+++++...
T Consensus 202 EPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~ 266 (320)
T PRK13631 202 EPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIFTD 266 (320)
T ss_pred CCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999875 4789999999999774 5999999999999999999998754
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.2e-22 Score=206.93 Aligned_cols=160 Identities=26% Similarity=0.374 Sum_probs=126.1
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC-------------------cHHhhcceEEEcccC--cccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA-------------------PEAEQEKIGLVSKEP--IFLFCDFN 143 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~-------------------~~~~r~~i~~v~Q~~--~~~~~~~~ 143 (632)
.+||+|++||+++|+||||||||||+++|+|+.... ....++.++||+|+| .++..++.
T Consensus 25 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~ 104 (290)
T PRK13634 25 DVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVE 104 (290)
T ss_pred eEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhhhhHH
Confidence 499999999999999999999999999998653211 113456799999997 45555555
Q ss_pred cccccccCCC--CCC----HHHHHHHHHHccch-h----hHhhCCcccccccc-----------------cCCCCHHHHH
Q 047286 144 EGQYIPYGKQ--NAS----DEHIRPAVQLANAE-K----SIDKLPLGLDTVVA-----------------TNAVDAQSER 195 (632)
Q Consensus 144 ~~~~i~~~~~--~~~----~~~~~~~~~~~~l~-~----~i~~l~~g~~~~v~-----------------ts~LD~~~~~ 195 (632)
+ |+.++.. ..+ .+++.++++.+++. + .+..||+|+.++++ |++||+.++.
T Consensus 105 e--ni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~ 182 (290)
T PRK13634 105 K--DICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRK 182 (290)
T ss_pred H--HHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHH
Confidence 5 6655421 112 23566778888875 2 35678899988773 9999999999
Q ss_pred HHHHHHHHHhC--CceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhcC
Q 047286 196 IVQAAMVKLVT--NQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIED 246 (632)
Q Consensus 196 ~i~~~l~~~~~--~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~~ 246 (632)
.+.+.|+++.+ +.|+|++||+++.+. .||||++|++|++++.|+++++...
T Consensus 183 ~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 236 (290)
T PRK13634 183 EMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFAD 236 (290)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999853 789999999999875 5999999999999999999988654
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.6e-22 Score=205.41 Aligned_cols=160 Identities=22% Similarity=0.347 Sum_probs=126.7
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC---------------CcHHhhcceEEEcccCc--ccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY---------------APEAEQEKIGLVSKEPI--FLFCDFNEGQY 147 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~---------------~~~~~r~~i~~v~Q~~~--~~~~~~~~~~~ 147 (632)
.+||+|++||+++|+||||||||||+++|+|+... .+...++.++|++|+|. ++..++.+ |
T Consensus 25 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e--n 102 (279)
T PRK13650 25 DVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVED--D 102 (279)
T ss_pred eeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHH--H
Confidence 39999999999999999999999999999865321 12235678999999984 33345555 6
Q ss_pred cccCCC--CCC----HHHHHHHHHHccchhh----HhhCCcccccccc-----------------cCCCCHHHHHHHHHH
Q 047286 148 IPYGKQ--NAS----DEHIRPAVQLANAEKS----IDKLPLGLDTVVA-----------------TNAVDAQSERIVQAA 200 (632)
Q Consensus 148 i~~~~~--~~~----~~~~~~~~~~~~l~~~----i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~~ 200 (632)
+.++.. ..+ .+++.++++.+++.+. ...||+|+.++++ |++||+.+++.+.+.
T Consensus 103 i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~ 182 (279)
T PRK13650 103 VAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKT 182 (279)
T ss_pred HHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHH
Confidence 665422 112 3456778888887654 4567788877773 999999999999999
Q ss_pred HHHHhC--CceEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHhcC
Q 047286 201 MVKLVT--NQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIED 246 (632)
Q Consensus 201 l~~~~~--~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~~ 246 (632)
|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 183 l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 183 IKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 999853 7899999999998878999999999999999999988654
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.2e-22 Score=210.27 Aligned_cols=165 Identities=21% Similarity=0.318 Sum_probs=130.2
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC-------------------cHHhhcceEEEcccCccccc-cccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA-------------------PEAEQEKIGLVSKEPIFLFC-DFNE 144 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~-------------------~~~~r~~i~~v~Q~~~~~~~-~~~~ 144 (632)
.+||++++||+++|+||||||||||+++|.|+...+ ....++.++|++|++.+|.. ++.+
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e 94 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRG 94 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHH
Confidence 389999999999999999999999999998753211 01235679999999977653 5544
Q ss_pred ccccccCCCCC----CHHHHHHHHHHccchh----hHhhCCccccccc-----------------ccCCCCHHHHHHHHH
Q 047286 145 GQYIPYGKQNA----SDEHIRPAVQLANAEK----SIDKLPLGLDTVV-----------------ATNAVDAQSERIVQA 199 (632)
Q Consensus 145 ~~~i~~~~~~~----~~~~~~~~~~~~~l~~----~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~ 199 (632)
|+.++.... ..+++.++++..++.+ .+.+||+|+++++ +|++||+.+++.+.+
T Consensus 95 --nl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~ 172 (354)
T TIGR02142 95 --NLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILP 172 (354)
T ss_pred --HHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHH
Confidence 676543211 1234677888887754 4567899998888 399999999999999
Q ss_pred HHHHHhC--CceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcCCCcHH
Q 047286 200 AMVKLVT--NQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIEDPEGAY 251 (632)
Q Consensus 200 ~l~~~~~--~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~~~~~~ 251 (632)
.|+++.+ +.|+|++||+++.+.. ||++++|++|++++.|+++++...+...|
T Consensus 173 ~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~ 227 (354)
T TIGR02142 173 YLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLPW 227 (354)
T ss_pred HHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCcCccc
Confidence 9999854 6899999999998865 99999999999999999999987655443
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.7e-22 Score=200.71 Aligned_cols=162 Identities=23% Similarity=0.317 Sum_probs=126.9
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC-------C---------------cHHhhcceEEEcccCccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY-------A---------------PEAEQEKIGLVSKEPIFLFCDF 142 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~-------~---------------~~~~r~~i~~v~Q~~~~~~~~~ 142 (632)
.+||++++||+++|+||||||||||+++|.|+... . ....++.++|++|++.++..++
T Consensus 22 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~tv 101 (251)
T PRK14270 22 DINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSI 101 (251)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCcCCCcH
Confidence 39999999999999999999999999999975321 0 0123567999999998776555
Q ss_pred ccccccccCCC--CC-C----HHHHHHHHHHccch--------hhHhhCCcccccccc-----------------cCCCC
Q 047286 143 NEGQYIPYGKQ--NA-S----DEHIRPAVQLANAE--------KSIDKLPLGLDTVVA-----------------TNAVD 190 (632)
Q Consensus 143 ~~~~~i~~~~~--~~-~----~~~~~~~~~~~~l~--------~~i~~l~~g~~~~v~-----------------ts~LD 190 (632)
.+ |+.++.. .. . .+++.++++.+++. .....||.|..++++ |++||
T Consensus 102 ~e--nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD 179 (251)
T PRK14270 102 YD--NVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALD 179 (251)
T ss_pred HH--HHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 54 5654321 11 1 23455677777652 345678889888773 99999
Q ss_pred HHHHHHHHHHHHHHhCCceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcCCC
Q 047286 191 AQSERIVQAAMVKLVTNQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIEDPE 248 (632)
Q Consensus 191 ~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~~~ 248 (632)
+.+++.+.+.|+++.++.|+|++||+++.+.. ||++++|++|++++.|+++++...+.
T Consensus 180 ~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~ 238 (251)
T PRK14270 180 PISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIFLEPQ 238 (251)
T ss_pred HHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHhcCCC
Confidence 99999999999998767899999999998765 99999999999999999999876543
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.6e-22 Score=200.37 Aligned_cols=167 Identities=22% Similarity=0.315 Sum_probs=128.4
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC----------------------cHHhhcceEEEcccCccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA----------------------PEAEQEKIGLVSKEPIFLFCDF 142 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~----------------------~~~~r~~i~~v~Q~~~~~~~~~ 142 (632)
.+||++++||+++|+||||||||||+++|.|+.... ....++.++|++|++.+|..++
T Consensus 24 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv 103 (253)
T PRK14261 24 DITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPKSI 103 (253)
T ss_pred eeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCccCcccH
Confidence 399999999999999999999999999998652210 1123567999999998777665
Q ss_pred ccccccccCCC--C-CC----HHHHHHHHHHccc--------hhhHhhCCccccccc-----------------ccCCCC
Q 047286 143 NEGQYIPYGKQ--N-AS----DEHIRPAVQLANA--------EKSIDKLPLGLDTVV-----------------ATNAVD 190 (632)
Q Consensus 143 ~~~~~i~~~~~--~-~~----~~~~~~~~~~~~l--------~~~i~~l~~g~~~~v-----------------~ts~LD 190 (632)
.+ |+.++.. . .. .+++.++++.+++ +.....||.|..+++ +|++||
T Consensus 104 ~e--ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD 181 (253)
T PRK14261 104 YE--NVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALD 181 (253)
T ss_pred HH--HHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 55 5655321 1 11 2334555665554 345667899998877 399999
Q ss_pred HHHHHHHHHHHHHHhCCceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhcCCCcHHHH
Q 047286 191 AQSERIVQAAMVKLVTNQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIEDPEGAYSQ 253 (632)
Q Consensus 191 ~~~~~~i~~~l~~~~~~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~~~~~~~~~ 253 (632)
+.+++.+.+.|+++.+++|+|++||++..+. .||++++|++|++++.|+++++...+...+.+
T Consensus 182 ~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~ 245 (253)
T PRK14261 182 PIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFENPHEELTE 245 (253)
T ss_pred HHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHHhCCCcHHHH
Confidence 9999999999999877789999999999886 59999999999999999999987654444433
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.4e-22 Score=196.29 Aligned_cols=152 Identities=28% Similarity=0.449 Sum_probs=119.9
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC---------------CcHHhhcceEEEcccCcccccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY---------------APEAEQEKIGLVSKEPIFLFCDFNEGQYIP 149 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~---------------~~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~ 149 (632)
.+||++++|++++|+||||||||||+++|.|.... .+...++.++|++|++.++..++.+ |+.
T Consensus 22 ~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e--~l~ 99 (220)
T cd03245 22 NVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRD--NIT 99 (220)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCccccchHHH--Hhh
Confidence 39999999999999999999999999999865321 1122456799999999877655554 665
Q ss_pred cCCCCCCHHHHHHHHHHccchhhHh---------------hCCccccccc-----------------ccCCCCHHHHHHH
Q 047286 150 YGKQNASDEHIRPAVQLANAEKSID---------------KLPLGLDTVV-----------------ATNAVDAQSERIV 197 (632)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~l~~~i~---------------~l~~g~~~~v-----------------~ts~LD~~~~~~i 197 (632)
+.......+++.+.++..++.+..+ .||+|+.+++ +|++||+.+++.+
T Consensus 100 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l 179 (220)
T cd03245 100 LGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERL 179 (220)
T ss_pred cCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHH
Confidence 5433334556677777777766544 5667776666 3999999999999
Q ss_pred HHHHHHHhCCceEEEEecCchHHhhcCeEEEEeCCeEEEec
Q 047286 198 QAAMVKLVTNQTVVIVANCLITIRNADCIIMVSKGKIVEKG 238 (632)
Q Consensus 198 ~~~l~~~~~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g 238 (632)
.+.|+++.++.|+|++||+++.++.||++++|++|++++.|
T Consensus 180 ~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 180 KERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred HHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 99999987668999999999988779999999999998654
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.4e-22 Score=204.29 Aligned_cols=164 Identities=21% Similarity=0.324 Sum_probs=127.5
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCC--C---C-----------------cHHhhcceEEEcccCcccccccc
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRF--Y---A-----------------PEAEQEKIGLVSKEPIFLFCDFN 143 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~--~---~-----------------~~~~r~~i~~v~Q~~~~~~~~~~ 143 (632)
+||+|++||+++|+||||||||||+++|.|+.. . . ...+++.++|++|++.++..++.
T Consensus 58 vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~ 137 (286)
T PRK14275 58 VNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFPKSIF 137 (286)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCCCccCHH
Confidence 999999999999999999999999999997521 0 0 01245689999999987766655
Q ss_pred cccccccCCC--CC-C----HHHHHHHHHHccc--------hhhHhhCCcccccccc-----------------cCCCCH
Q 047286 144 EGQYIPYGKQ--NA-S----DEHIRPAVQLANA--------EKSIDKLPLGLDTVVA-----------------TNAVDA 191 (632)
Q Consensus 144 ~~~~i~~~~~--~~-~----~~~~~~~~~~~~l--------~~~i~~l~~g~~~~v~-----------------ts~LD~ 191 (632)
+ |+.++.. .. . .+++.++++..++ +..+..||+|+.++++ |++||+
T Consensus 138 e--nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~ 215 (286)
T PRK14275 138 D--NIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDP 215 (286)
T ss_pred H--HHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCH
Confidence 5 5654321 11 1 2344556665554 3446789999988773 899999
Q ss_pred HHHHHHHHHHHHHhCCceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcCCCcHH
Q 047286 192 QSERIVQAAMVKLVTNQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIEDPEGAY 251 (632)
Q Consensus 192 ~~~~~i~~~l~~~~~~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~~~~~~ 251 (632)
.+++.+.+.|+++.++.|+|++||+++.+.. ||++++|++|++++.|+++++...+...+
T Consensus 216 ~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~~~~~~~~~ 276 (286)
T PRK14275 216 KATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLFTNPKDRM 276 (286)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCcHH
Confidence 9999999999998777899999999998865 99999999999999999999876544433
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=99.87 E-value=3e-22 Score=198.09 Aligned_cols=157 Identities=17% Similarity=0.292 Sum_probs=123.6
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC--------------cHHhhcceEEEcccCcccc-cccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA--------------PEAEQEKIGLVSKEPIFLF-CDFNEGQYIP 149 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~--------------~~~~r~~i~~v~Q~~~~~~-~~~~~~~~i~ 149 (632)
.+||++++||+++|+||||||||||+++|.|+.... ....++.++|++|++.++. .++.+ |+.
T Consensus 20 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~--~l~ 97 (220)
T cd03263 20 DLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVRE--HLR 97 (220)
T ss_pred ceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHH--HHH
Confidence 399999999999999999999999999998653211 1234567999999987653 35544 554
Q ss_pred cCC--CCC----CHHHHHHHHHHccchh----hHhhCCccccccc-----------------ccCCCCHHHHHHHHHHHH
Q 047286 150 YGK--QNA----SDEHIRPAVQLANAEK----SIDKLPLGLDTVV-----------------ATNAVDAQSERIVQAAMV 202 (632)
Q Consensus 150 ~~~--~~~----~~~~~~~~~~~~~l~~----~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l~ 202 (632)
+.. ... ..+++.++++..++.+ .+..||.|..+++ +|++||+.+++.+.+.|+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~ 177 (220)
T cd03263 98 FYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLIL 177 (220)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHH
Confidence 321 011 1245667777777643 4677899998877 399999999999999999
Q ss_pred HHhCCceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHH
Q 047286 203 KLVTNQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDEL 243 (632)
Q Consensus 203 ~~~~~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el 243 (632)
++.++.|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 178 ~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 178 EVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 98777899999999998865 999999999999999988765
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.2e-22 Score=199.25 Aligned_cols=161 Identities=24% Similarity=0.332 Sum_probs=125.6
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC---------------CcHHhhcceEEEcccCcccc-ccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY---------------APEAEQEKIGLVSKEPIFLF-CDFNEGQYI 148 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~---------------~~~~~r~~i~~v~Q~~~~~~-~~~~~~~~i 148 (632)
.+||+|++|++++|+||||||||||+++|.|.... ++...++.++|++|++.++. .++.+ |+
T Consensus 19 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e--~l 96 (242)
T cd03295 19 NLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEE--NI 96 (242)
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHH--HH
Confidence 39999999999999999999999999999865321 11234567999999987664 45555 55
Q ss_pred ccCCC--CC----CHHHHHHHHHHccch------hhHhhCCccccccc-----------------ccCCCCHHHHHHHHH
Q 047286 149 PYGKQ--NA----SDEHIRPAVQLANAE------KSIDKLPLGLDTVV-----------------ATNAVDAQSERIVQA 199 (632)
Q Consensus 149 ~~~~~--~~----~~~~~~~~~~~~~l~------~~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~ 199 (632)
.+... .. ..+++.++++..++. ..+.+||.|+.+++ +|++||+.+++.+.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~ 176 (242)
T cd03295 97 ALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQE 176 (242)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHH
Confidence 44311 11 134566777777665 23567999998887 399999999999999
Q ss_pred HHHHHhC--CceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhcCC
Q 047286 200 AMVKLVT--NQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIEDP 247 (632)
Q Consensus 200 ~l~~~~~--~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~~~ 247 (632)
.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++.+..
T Consensus 177 ~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 227 (242)
T cd03295 177 EFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSP 227 (242)
T ss_pred HHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcCC
Confidence 9999853 789999999999775 49999999999999999999886543
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.8e-22 Score=200.16 Aligned_cols=165 Identities=20% Similarity=0.310 Sum_probs=128.2
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC-------C---------------cHHhhcceEEEcccCcccc-cc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY-------A---------------PEAEQEKIGLVSKEPIFLF-CD 141 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~-------~---------------~~~~r~~i~~v~Q~~~~~~-~~ 141 (632)
.+||+|++||+++|+||||||||||+++|.|+..+ . +...++.++|++|++.++. .+
T Consensus 22 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~t 101 (252)
T PRK14256 22 DVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMS 101 (252)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCCCCcCc
Confidence 38999999999999999999999999999976321 0 1124667999999988665 35
Q ss_pred cccccccccCC---CCCC----HHHHHHHHHHccchh--------hHhhCCcccccccc-----------------cCCC
Q 047286 142 FNEGQYIPYGK---QNAS----DEHIRPAVQLANAEK--------SIDKLPLGLDTVVA-----------------TNAV 189 (632)
Q Consensus 142 ~~~~~~i~~~~---~~~~----~~~~~~~~~~~~l~~--------~i~~l~~g~~~~v~-----------------ts~L 189 (632)
+.+ |+.++. .... .+++.++++.+++.. ....||.|+.++++ |++|
T Consensus 102 v~e--nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gL 179 (252)
T PRK14256 102 IYD--NVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASAL 179 (252)
T ss_pred HHH--HHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 555 554321 1111 234566777777532 35678889888773 9999
Q ss_pred CHHHHHHHHHHHHHHhCCceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhcCCCcHH
Q 047286 190 DAQSERIVQAAMVKLVTNQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIEDPEGAY 251 (632)
Q Consensus 190 D~~~~~~i~~~l~~~~~~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~~~~~~~ 251 (632)
|+.+++.+.+.|+++.+++|+|++||+++.+. .||++++|++|++++.|+++++...+...|
T Consensus 180 D~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~ 242 (252)
T PRK14256 180 DPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIFTTPEKKQ 242 (252)
T ss_pred CHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhCCCcHH
Confidence 99999999999999977789999999999885 599999999999999999999876655444
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-21 Score=193.49 Aligned_cols=152 Identities=22% Similarity=0.385 Sum_probs=121.1
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC---------------CcHHhhcceEEEcccCcccccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY---------------APEAEQEKIGLVSKEPIFLFCDFNEGQYIP 149 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~---------------~~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~ 149 (632)
.+||++++|++++|+||||||||||+++|.|.... +...+++.++|++|++.++..++.+ |+.
T Consensus 22 ~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~e--nl~ 99 (221)
T cd03244 22 NISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRS--NLD 99 (221)
T ss_pred ceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCccccchHHH--HhC
Confidence 49999999999999999999999999999865321 1123567899999999877766655 565
Q ss_pred cCCCCCCHHHHHHHHHHccchhhHhh---------------CCccccccc-----------------ccCCCCHHHHHHH
Q 047286 150 YGKQNASDEHIRPAVQLANAEKSIDK---------------LPLGLDTVV-----------------ATNAVDAQSERIV 197 (632)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~l~~~i~~---------------l~~g~~~~v-----------------~ts~LD~~~~~~i 197 (632)
+.. ....+++.++++..++.+.+.+ ||.|+.+++ +|++||+.+++.+
T Consensus 100 ~~~-~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l 178 (221)
T cd03244 100 PFG-EYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALI 178 (221)
T ss_pred cCC-CCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHH
Confidence 433 2355667777777777766654 444444444 3899999999999
Q ss_pred HHHHHHHhCCceEEEEecCchHHhhcCeEEEEeCCeEEEecC
Q 047286 198 QAAMVKLVTNQTVVIVANCLITIRNADCIIMVSKGKIVEKGT 239 (632)
Q Consensus 198 ~~~l~~~~~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~ 239 (632)
.+.|+++.++.|+|++||++..+..||++++|++|++++.|+
T Consensus 179 ~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 179 QKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred HHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 999999877789999999999988899999999999998875
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.1e-22 Score=202.68 Aligned_cols=157 Identities=20% Similarity=0.343 Sum_probs=123.8
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC---------------cHHhhcceEEEcccC--cccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA---------------PEAEQEKIGLVSKEP--IFLFCDFNEGQY 147 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~---------------~~~~r~~i~~v~Q~~--~~~~~~~~~~~~ 147 (632)
.+||+|++||+++|+||||||||||+++|.|+.... ....++.++|++|+| .++..++.+ |
T Consensus 23 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e--~ 100 (274)
T PRK13647 23 GLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWD--D 100 (274)
T ss_pred eEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHHH--H
Confidence 499999999999999999999999999998653211 123456799999997 345555555 6
Q ss_pred cccCCC--CCC----HHHHHHHHHHccchh----hHhhCCcccccccc-----------------cCCCCHHHHHHHHHH
Q 047286 148 IPYGKQ--NAS----DEHIRPAVQLANAEK----SIDKLPLGLDTVVA-----------------TNAVDAQSERIVQAA 200 (632)
Q Consensus 148 i~~~~~--~~~----~~~~~~~~~~~~l~~----~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~~ 200 (632)
+.++.. ..+ .+++.++++.+++.+ .+..||+|+.++++ |++||+.++..+.+.
T Consensus 101 l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~ 180 (274)
T PRK13647 101 VAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEI 180 (274)
T ss_pred HHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHH
Confidence 665421 112 245677788877654 45678889888773 999999999999999
Q ss_pred HHHHh-CCceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHH
Q 047286 201 MVKLV-TNQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDEL 243 (632)
Q Consensus 201 l~~~~-~~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el 243 (632)
|+++. ++.|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 181 l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 181 LDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 99985 4789999999999885 5999999999999999998764
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.4e-22 Score=196.59 Aligned_cols=158 Identities=20% Similarity=0.300 Sum_probs=121.1
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC---------------cHH-hhcceEEEcccCccccc-ccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA---------------PEA-EQEKIGLVSKEPIFLFC-DFNEGQY 147 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~---------------~~~-~r~~i~~v~Q~~~~~~~-~~~~~~~ 147 (632)
.+||++++||+++|+||||||||||+++|.|+.... +.. .++.++|++|++.++.. ++.+ |
T Consensus 18 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~--~ 95 (222)
T cd03224 18 GVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEE--N 95 (222)
T ss_pred eeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHH--H
Confidence 399999999999999999999999999998653211 111 24579999999976653 5554 5
Q ss_pred cccCCCC----CCHHHHHHHHHHc-cc----hhhHhhCCccccccc-----------------ccCCCCHHHHHHHHHHH
Q 047286 148 IPYGKQN----ASDEHIRPAVQLA-NA----EKSIDKLPLGLDTVV-----------------ATNAVDAQSERIVQAAM 201 (632)
Q Consensus 148 i~~~~~~----~~~~~~~~~~~~~-~l----~~~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l 201 (632)
+.+.... ...+++.++++.. ++ +..+.+||+|+.+++ +|++||+.+++.+.+.|
T Consensus 96 l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l 175 (222)
T cd03224 96 LLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAI 175 (222)
T ss_pred HHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHH
Confidence 5543211 1123344555554 23 445677999998877 39999999999999999
Q ss_pred HHHh-CCceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHh
Q 047286 202 VKLV-TNQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELI 244 (632)
Q Consensus 202 ~~~~-~~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~ 244 (632)
+++. +++|+|++||+++.+.. ||++++|++|++++.|+.+++.
T Consensus 176 ~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 176 RELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred HHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 9886 47899999999998755 9999999999999999888764
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.4e-22 Score=186.15 Aligned_cols=128 Identities=21% Similarity=0.258 Sum_probs=93.2
Q ss_pred cccccEEEeeEEEEEecCCCChHHHHHhhhcCCChhh---------h-c---HHHH------------------------
Q 047286 497 TVRGDIVFEHTVALVGENGNGKSTVISLAERFHNPEQ---------V-I---YSWI------------------------ 539 (632)
Q Consensus 497 ~~~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~-~---~~~~------------------------ 539 (632)
.++-+|.-+++++|+||||||||||+++|.++.+|++ + . ...+
T Consensus 20 gi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~ 99 (240)
T COG1126 20 GISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVT 99 (240)
T ss_pred CcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHH
Confidence 3344677777999999999999999999999988754 0 0 0000
Q ss_pred --------------HHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh------------------------
Q 047286 540 --------------IIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY------------------------ 581 (632)
Q Consensus 540 --------------~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~------------------------ 581 (632)
...+.+.+... |+.........+|||||+||+|||||+--
T Consensus 100 lap~~v~~~~k~eA~~~A~~lL~~V--GL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~ 177 (240)
T COG1126 100 LAPVKVKKLSKAEAREKALELLEKV--GLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLD 177 (240)
T ss_pred hhhHHHcCCCHHHHHHHHHHHHHHc--CchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHH
Confidence 00112233322 45445556778999999999999999321
Q ss_pred ------------hccccchhhhhc-CCEEEEEeCCeEeeecChHHHhccCCc-hhHHHH
Q 047286 582 ------------CGCGSPPYHYKN-ADITSVVKNGVIAEKGRHDALMKITDG-TYASLT 626 (632)
Q Consensus 582 ------------~~iahrl~~~~~-aD~I~vl~~G~ive~G~h~eL~~~~~g-~y~~l~ 626 (632)
+++||-....++ ||||++||+|+|+|+|+++++..+++. +-++++
T Consensus 178 vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p~~~R~~~FL 236 (240)
T COG1126 178 VMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPKSERTRQFL 236 (240)
T ss_pred HHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCCCCHHHHHHH
Confidence 889999888764 999999999999999999999987432 244443
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.8e-22 Score=198.93 Aligned_cols=158 Identities=23% Similarity=0.287 Sum_probs=123.7
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC---------------C---cHHhhcceEEEcccCcccc-cccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY---------------A---PEAEQEKIGLVSKEPIFLF-CDFNEG 145 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~---------------~---~~~~r~~i~~v~Q~~~~~~-~~~~~~ 145 (632)
.+||++++|++++|+||||||||||+++|.|+... . ....++.++|++|++.+|. .++.+
T Consensus 19 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~- 97 (241)
T cd03256 19 DVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLE- 97 (241)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcHHH-
Confidence 38999999999999999999999999999865321 0 1124567999999987665 35544
Q ss_pred cccccCCC--------------CCCHHHHHHHHHHccchh----hHhhCCccccccc-----------------ccCCCC
Q 047286 146 QYIPYGKQ--------------NASDEHIRPAVQLANAEK----SIDKLPLGLDTVV-----------------ATNAVD 190 (632)
Q Consensus 146 ~~i~~~~~--------------~~~~~~~~~~~~~~~l~~----~i~~l~~g~~~~v-----------------~ts~LD 190 (632)
|+.++.. ....+++.++++..++.+ ...+||+|+.+++ +|++||
T Consensus 98 -~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD 176 (241)
T cd03256 98 -NVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLD 176 (241)
T ss_pred -HHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCC
Confidence 5543211 112345667777777754 3567899998887 399999
Q ss_pred HHHHHHHHHHHHHHh--CCceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHh
Q 047286 191 AQSERIVQAAMVKLV--TNQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELI 244 (632)
Q Consensus 191 ~~~~~~i~~~l~~~~--~~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~ 244 (632)
+.+++.+.+.|+++. .++|+|++||+++.+. .||++++|++|++++.|+++++.
T Consensus 177 ~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (241)
T cd03256 177 PASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELT 233 (241)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHHhh
Confidence 999999999999985 3789999999999987 59999999999999999988863
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=6e-22 Score=203.14 Aligned_cols=160 Identities=18% Similarity=0.337 Sum_probs=126.7
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC-----------------cHHhhcceEEEcccC--cccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA-----------------PEAEQEKIGLVSKEP--IFLFCDFNEG 145 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~-----------------~~~~r~~i~~v~Q~~--~~~~~~~~~~ 145 (632)
.+||+|++||+++|+||||||||||+++|+|+.... +...++.++|++|++ .++..++.+
T Consensus 24 ~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e- 102 (283)
T PRK13636 24 GININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQ- 102 (283)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccHHH-
Confidence 399999999999999999999999999998753211 123567899999997 345556655
Q ss_pred cccccCCC--CCC----HHHHHHHHHHccchh----hHhhCCcccccccc-----------------cCCCCHHHHHHHH
Q 047286 146 QYIPYGKQ--NAS----DEHIRPAVQLANAEK----SIDKLPLGLDTVVA-----------------TNAVDAQSERIVQ 198 (632)
Q Consensus 146 ~~i~~~~~--~~~----~~~~~~~~~~~~l~~----~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~ 198 (632)
|+.++.. ..+ .+++.++++.+++.+ ....||+|+.++++ |++||+.+++.+.
T Consensus 103 -~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~ 181 (283)
T PRK13636 103 -DVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIM 181 (283)
T ss_pred -HHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHH
Confidence 5654321 112 244677778777754 46778899988773 9999999999999
Q ss_pred HHHHHHhC--CceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhcC
Q 047286 199 AAMVKLVT--NQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIED 246 (632)
Q Consensus 199 ~~l~~~~~--~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~~ 246 (632)
+.|+++.+ +.|++++||+++.+. .||++++|++|++++.|+++++...
T Consensus 182 ~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 232 (283)
T PRK13636 182 KLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 232 (283)
T ss_pred HHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99998854 789999999999986 5999999999999999999998653
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.6e-22 Score=201.38 Aligned_cols=166 Identities=26% Similarity=0.376 Sum_probs=127.6
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC---------------cHHh----hcceEEEcccCcccc-ccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA---------------PEAE----QEKIGLVSKEPIFLF-CDFNE 144 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~---------------~~~~----r~~i~~v~Q~~~~~~-~~~~~ 144 (632)
.+||++++|++++|+||||||||||+++|.|+.... +... +++++|++|++.++. .++.+
T Consensus 42 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e 121 (269)
T cd03294 42 DVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLE 121 (269)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHH
Confidence 399999999999999999999999999998653211 1111 357999999987664 35544
Q ss_pred ccccccCC--CC----CCHHHHHHHHHHccchhh----HhhCCccccccc-----------------ccCCCCHHHHHHH
Q 047286 145 GQYIPYGK--QN----ASDEHIRPAVQLANAEKS----IDKLPLGLDTVV-----------------ATNAVDAQSERIV 197 (632)
Q Consensus 145 ~~~i~~~~--~~----~~~~~~~~~~~~~~l~~~----i~~l~~g~~~~v-----------------~ts~LD~~~~~~i 197 (632)
|+.++. .. ...+++.++++.+++.+. +..||+|+.+++ +|++||+.+++.+
T Consensus 122 --~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l 199 (269)
T cd03294 122 --NVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREM 199 (269)
T ss_pred --HHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHH
Confidence 554421 11 113456778888887654 456788888877 3999999999999
Q ss_pred HHHHHHHh-C-CceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhcCCCcHHH
Q 047286 198 QAAMVKLV-T-NQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIEDPEGAYS 252 (632)
Q Consensus 198 ~~~l~~~~-~-~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~~~~~~~~ 252 (632)
.+.|.++. + ++|+|++||+++.+. .||++++|++|++++.|+++++.+.+...|.
T Consensus 200 ~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~ 257 (269)
T cd03294 200 QDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNPANDYV 257 (269)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhCcCcHHH
Confidence 99999885 3 789999999999875 4999999999999999999999766544443
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.3e-22 Score=200.51 Aligned_cols=160 Identities=23% Similarity=0.297 Sum_probs=126.1
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC-----C-----------------cHHhhcceEEEcccCcccccccc
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY-----A-----------------PEAEQEKIGLVSKEPIFLFCDFN 143 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~-----~-----------------~~~~r~~i~~v~Q~~~~~~~~~~ 143 (632)
+||++++||+++|+||||||||||+++|.|+... . ....++.++|++|++.+|..++.
T Consensus 39 vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~ 118 (267)
T PRK14237 39 IDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFAKSIY 118 (267)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCccccccHH
Confidence 9999999999999999999999999999876421 0 01236679999999987776665
Q ss_pred cccccccCCC--C-CC----HHHHHHHHHHccch--------hhHhhCCccccccc-----------------ccCCCCH
Q 047286 144 EGQYIPYGKQ--N-AS----DEHIRPAVQLANAE--------KSIDKLPLGLDTVV-----------------ATNAVDA 191 (632)
Q Consensus 144 ~~~~i~~~~~--~-~~----~~~~~~~~~~~~l~--------~~i~~l~~g~~~~v-----------------~ts~LD~ 191 (632)
+ |+.++.. . .. .+++.++++..++. .....||+|..+++ +|++||+
T Consensus 119 e--ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~ 196 (267)
T PRK14237 119 E--NITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDP 196 (267)
T ss_pred H--HHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 5 6655321 1 11 23455666666653 33567888988877 3999999
Q ss_pred HHHHHHHHHHHHHhCCceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhcCC
Q 047286 192 QSERIVQAAMVKLVTNQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIEDP 247 (632)
Q Consensus 192 ~~~~~i~~~l~~~~~~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~~~ 247 (632)
.+++.+.+.|+++.++.|+|++||+++.+. .||++++|++|++++.|+++++...+
T Consensus 197 ~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 253 (267)
T PRK14237 197 ISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIFTNP 253 (267)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcCC
Confidence 999999999999877789999999998875 59999999999999999999987643
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.6e-22 Score=198.80 Aligned_cols=163 Identities=22% Similarity=0.326 Sum_probs=126.7
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC----------------------cHHhhcceEEEcccCccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA----------------------PEAEQEKIGLVSKEPIFLFCDF 142 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~----------------------~~~~r~~i~~v~Q~~~~~~~~~ 142 (632)
.+||+|++|++++|+||||||||||+++|.|+.... ...+++.++|++|++.++..++
T Consensus 22 ~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv 101 (251)
T PRK14249 22 NINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSI 101 (251)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCccCcCcH
Confidence 399999999999999999999999999998753211 1134677999999998777666
Q ss_pred ccccccccCCC--CC-C----HHHHHHHHHHccc--------hhhHhhCCcccccccc-----------------cCCCC
Q 047286 143 NEGQYIPYGKQ--NA-S----DEHIRPAVQLANA--------EKSIDKLPLGLDTVVA-----------------TNAVD 190 (632)
Q Consensus 143 ~~~~~i~~~~~--~~-~----~~~~~~~~~~~~l--------~~~i~~l~~g~~~~v~-----------------ts~LD 190 (632)
.+ |+.++.. .. . .+.+.++++..++ +.....||.|..++++ |++||
T Consensus 102 ~e--nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD 179 (251)
T PRK14249 102 FD--NVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALD 179 (251)
T ss_pred HH--HHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 55 5654321 11 1 2334455555554 3445678889888773 99999
Q ss_pred HHHHHHHHHHHHHHhCCceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcCCCc
Q 047286 191 AQSERIVQAAMVKLVTNQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIEDPEG 249 (632)
Q Consensus 191 ~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~~~~ 249 (632)
+.++..+.+.|+++.++.|+|++||+++.+.. ||++++|++|++++.|+++++...+..
T Consensus 180 ~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~ 239 (251)
T PRK14249 180 PVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFSRPRD 239 (251)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHHhCCCC
Confidence 99999999999998767899999999998865 899999999999999999998765443
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.6e-22 Score=199.20 Aligned_cols=161 Identities=22% Similarity=0.316 Sum_probs=127.1
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC------C----------------cHHhhcceEEEcccCcccccccc
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY------A----------------PEAEQEKIGLVSKEPIFLFCDFN 143 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~------~----------------~~~~r~~i~~v~Q~~~~~~~~~~ 143 (632)
+||++++||+++|+||||||||||+++|.|+..+ . ...+++.++|++|++.+|..++.
T Consensus 27 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~ 106 (261)
T PRK14263 27 SHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPFSMSIF 106 (261)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCccccccHH
Confidence 9999999999999999999999999999865321 0 01235679999999987765555
Q ss_pred cccccccCCC-----CCCHHHHHHHHHHccchhh--------HhhCCccccccc-----------------ccCCCCHHH
Q 047286 144 EGQYIPYGKQ-----NASDEHIRPAVQLANAEKS--------IDKLPLGLDTVV-----------------ATNAVDAQS 193 (632)
Q Consensus 144 ~~~~i~~~~~-----~~~~~~~~~~~~~~~l~~~--------i~~l~~g~~~~v-----------------~ts~LD~~~ 193 (632)
+ |+.++.. ....+++.++++..++.+. ...||.|..+++ +|++||+.+
T Consensus 107 e--nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~ 184 (261)
T PRK14263 107 D--NVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIA 184 (261)
T ss_pred H--HHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHH
Confidence 4 6655421 1123456778888776432 346889988777 399999999
Q ss_pred HHHHHHHHHHHhCCceEEEEecCchHHh-hcCeEEEEe--------CCeEEEecChhHHhcCCC
Q 047286 194 ERIVQAAMVKLVTNQTVVIVANCLITIR-NADCIIMVS--------KGKIVEKGTHDELIEDPE 248 (632)
Q Consensus 194 ~~~i~~~l~~~~~~~tviiitH~~~~~~-~aD~i~vl~--------~G~i~~~g~~~el~~~~~ 248 (632)
++.+.+.|+++.++.|+|++||+++.+. .||++++|+ +|++++.|+++++.+.+.
T Consensus 185 ~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~~~~~~~~~ 248 (261)
T PRK14263 185 TRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIFQNPR 248 (261)
T ss_pred HHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeCCHHHHHhCCC
Confidence 9999999999877789999999999875 499999996 899999999999876544
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.1e-22 Score=211.58 Aligned_cols=170 Identities=23% Similarity=0.340 Sum_probs=132.2
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC-----------------cHHhhcceEEEcccCcc-cccccccccc
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA-----------------PEAEQEKIGLVSKEPIF-LFCDFNEGQY 147 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~-----------------~~~~r~~i~~v~Q~~~~-~~~~~~~~~~ 147 (632)
+||++++||++||||+||||||||.++|.|+.... ....|+++-+++|+|.. ++...+..++
T Consensus 310 VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~ 389 (539)
T COG1123 310 VSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDI 389 (539)
T ss_pred eeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHH
Confidence 99999999999999999999999999998653211 11256789999999963 1222222212
Q ss_pred ccc----CCC---CCCHHHHHHHHHHccchh-----hHhhCCcccccccc-----------------cCCCCHHHHHHHH
Q 047286 148 IPY----GKQ---NASDEHIRPAVQLANAEK-----SIDKLPLGLDTVVA-----------------TNAVDAQSERIVQ 198 (632)
Q Consensus 148 i~~----~~~---~~~~~~~~~~~~~~~l~~-----~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~ 198 (632)
+.. ... ....+++.+.++..++.. +..+||+|+.++++ +|+||+..+..+.
T Consensus 390 i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~Vl 469 (539)
T COG1123 390 LAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVL 469 (539)
T ss_pred HHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHH
Confidence 211 111 112345777788887654 45567789988884 8999999999999
Q ss_pred HHHHHHhC--CceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcCCCcHHHHHH
Q 047286 199 AAMVKLVT--NQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLV 255 (632)
Q Consensus 199 ~~l~~~~~--~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~ 255 (632)
+.|+++.+ +.|.++||||+..+++ ||||++|++|+|++.|+.+++++.+.+.|.+..
T Consensus 470 nLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~~~v~~~p~h~Ytr~L 529 (539)
T COG1123 470 NLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFENPQHPYTRKL 529 (539)
T ss_pred HHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCCHHHHhcCCCChHHHHH
Confidence 99999864 6899999999999987 999999999999999999999999999998755
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.5e-22 Score=181.98 Aligned_cols=106 Identities=29% Similarity=0.443 Sum_probs=83.7
Q ss_pred cEEEeeEEEEEecCCCChHHHHHhhhcCCChhh--hcH-------------------------HHH--------------
Q 047286 501 DIVFEHTVALVGENGNGKSTVISLAERFHNPEQ--VIY-------------------------SWI-------------- 539 (632)
Q Consensus 501 ~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~--~~~-------------------------~~~-------------- 539 (632)
.|+-++.|||+||||||||||++|+.||..|.+ +|. +.+
T Consensus 21 ~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~L 100 (231)
T COG3840 21 TVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGL 100 (231)
T ss_pred eecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCccc
Confidence 455567899999999999999999999988843 000 000
Q ss_pred ---------------HHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh-----------------------
Q 047286 540 ---------------IIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY----------------------- 581 (632)
Q Consensus 540 ---------------~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~----------------------- 581 (632)
..++.+|...|| ..||||||||+||||+++|
T Consensus 101 kL~a~~r~~v~~aa~~vGl~~~~~RLP-----------~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl 169 (231)
T COG3840 101 KLNAEQREKVEAAAAQVGLAGFLKRLP-----------GELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEML 169 (231)
T ss_pred ccCHHHHHHHHHHHHHhChhhHhhhCc-----------cccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHH
Confidence 112334444444 4799999999999999776
Q ss_pred --------------hccccchhhhh-cCCEEEEEeCCeEeeecChHHHhcc
Q 047286 582 --------------CGCGSPPYHYK-NADITSVVKNGVIAEKGRHDALMKI 617 (632)
Q Consensus 582 --------------~~iahrl~~~~-~aD~I~vl~~G~ive~G~h~eL~~~ 617 (632)
+++||.++..+ .||+++++++|||+++|.-+++.+.
T Consensus 170 ~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~ 220 (231)
T COG3840 170 ALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSG 220 (231)
T ss_pred HHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhcc
Confidence 78999998775 6999999999999999999999986
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.3e-22 Score=199.04 Aligned_cols=165 Identities=24% Similarity=0.345 Sum_probs=127.5
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC----------------------c------HHhhcceEEEcccCc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA----------------------P------EAEQEKIGLVSKEPI 136 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~----------------------~------~~~r~~i~~v~Q~~~ 136 (632)
.+||++++||+++|+||||||||||+++|.|+.... + ...++.++|++|++.
T Consensus 18 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~ 97 (252)
T TIGR03005 18 GLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFN 97 (252)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEEEecCcc
Confidence 399999999999999999999999999998653210 0 124678999999987
Q ss_pred ccc-cccccccccccCC---CCC----CHHHHHHHHHHccchh----hHhhCCccccccc-----------------ccC
Q 047286 137 FLF-CDFNEGQYIPYGK---QNA----SDEHIRPAVQLANAEK----SIDKLPLGLDTVV-----------------ATN 187 (632)
Q Consensus 137 ~~~-~~~~~~~~i~~~~---~~~----~~~~~~~~~~~~~l~~----~i~~l~~g~~~~v-----------------~ts 187 (632)
++. .++.+ |+.++. ... ..+++.++++..++.+ ....||.|..+++ +|+
T Consensus 98 ~~~~~tv~~--nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~ 175 (252)
T TIGR03005 98 LFPHKTVLD--NVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTS 175 (252)
T ss_pred cCCCCcHHH--HHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 664 45544 555421 111 1245667777777654 3566888888777 399
Q ss_pred CCCHHHHHHHHHHHHHHhC--CceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhcCCCcHH
Q 047286 188 AVDAQSERIVQAAMVKLVT--NQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIEDPEGAY 251 (632)
Q Consensus 188 ~LD~~~~~~i~~~l~~~~~--~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~~~~~~~ 251 (632)
+||+.++..+.+.|+++.+ +.|+|++||++..+. .||++++|++|++++.|+++++.+.+...+
T Consensus 176 ~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~ 242 (252)
T TIGR03005 176 ALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIFRQPKEER 242 (252)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcCCCcHH
Confidence 9999999999999998853 789999999999885 599999999999999999999876654434
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-22 Score=194.38 Aligned_cols=160 Identities=19% Similarity=0.371 Sum_probs=125.7
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHH------------------hhcceEEEcccCccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEA------------------EQEKIGLVSKEPIFLFCDFNEGQ 146 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~------------------~r~~i~~v~Q~~~~~~~~~~~~~ 146 (632)
++||++++||+++|+|||||||||++|+|.| +|.|+. .|..|+..+|.+-+|. .++..+
T Consensus 22 ~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG--~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~-~lTVlE 98 (250)
T COG0411 22 DVSLEVRPGEIVGLIGPNGAGKTTLFNLITG--FYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFP-GLTVLE 98 (250)
T ss_pred ceeEEEcCCeEEEEECCCCCCceeeeeeecc--cccCCCceEEECCcccCCCCHHHHHhccceeecccccccC-CCcHHH
Confidence 3999999999999999999999999999984 343332 3566888899987654 444444
Q ss_pred ccccCCC------------------CCCHHHHHHHHHHccchhh----HhhCCccccccc-----------------ccC
Q 047286 147 YIPYGKQ------------------NASDEHIRPAVQLANAEKS----IDKLPLGLDTVV-----------------ATN 187 (632)
Q Consensus 147 ~i~~~~~------------------~~~~~~~~~~~~~~~l~~~----i~~l~~g~~~~v-----------------~ts 187 (632)
|+..+.. ....++..+.++.+++.+. ...||.|.+.++ +.+
T Consensus 99 Nv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~~P~lLLLDEPaA 178 (250)
T COG0411 99 NVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAA 178 (250)
T ss_pred HHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhcCCCEEEecCccC
Confidence 6654311 1113445667777776544 556888887666 379
Q ss_pred CCCHHHHHHHHHHHHHHhC--CceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcCC
Q 047286 188 AVDAQSERIVQAAMVKLVT--NQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIEDP 247 (632)
Q Consensus 188 ~LD~~~~~~i~~~l~~~~~--~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~~ 247 (632)
|+.+....++.+.|+++++ +.|+++|.||+..+.. ||||+||+.|+++++|+|+|+.++|
T Consensus 179 Gln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV~~dp 241 (250)
T COG0411 179 GLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRNNP 241 (250)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHHHhcCH
Confidence 9999999999999999975 4899999999998865 9999999999999999999998764
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.6e-22 Score=195.59 Aligned_cols=157 Identities=20% Similarity=0.284 Sum_probs=122.2
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC--------------cHHhhcceEEEcccCccccc-ccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA--------------PEAEQEKIGLVSKEPIFLFC-DFNEGQYIP 149 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~--------------~~~~r~~i~~v~Q~~~~~~~-~~~~~~~i~ 149 (632)
.+||++++||+++|+||||||||||+++|.|+.... +...++.++|++|++.++.. ++.+ |+.
T Consensus 18 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~--~l~ 95 (220)
T cd03265 18 GVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWE--NLY 95 (220)
T ss_pred ceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHH--HHH
Confidence 399999999999999999999999999998753211 12345679999999875542 3333 554
Q ss_pred cCC--CCC----CHHHHHHHHHHccchh----hHhhCCccccccc-----------------ccCCCCHHHHHHHHHHHH
Q 047286 150 YGK--QNA----SDEHIRPAVQLANAEK----SIDKLPLGLDTVV-----------------ATNAVDAQSERIVQAAMV 202 (632)
Q Consensus 150 ~~~--~~~----~~~~~~~~~~~~~l~~----~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l~ 202 (632)
+.. ... ..+++.++++..++.+ .+.+||+|+++++ +|++||+.+++.+.+.|+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~ 175 (220)
T cd03265 96 IHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIE 175 (220)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHH
Confidence 321 011 2345677888887754 4567899998877 399999999999999999
Q ss_pred HHhC--CceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHH
Q 047286 203 KLVT--NQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDEL 243 (632)
Q Consensus 203 ~~~~--~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el 243 (632)
++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 176 ~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 176 KLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred HHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 8753 6899999999998865 999999999999999987764
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.3e-22 Score=201.96 Aligned_cols=160 Identities=23% Similarity=0.356 Sum_probs=125.8
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC------------------cHHhhcceEEEcccCc--cccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA------------------PEAEQEKIGLVSKEPI--FLFCDFNE 144 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~------------------~~~~r~~i~~v~Q~~~--~~~~~~~~ 144 (632)
.+||+|++||+++|+||||||||||+++|+|+.... ....+++++|++|++. ++..++.+
T Consensus 25 ~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e 104 (282)
T PRK13640 25 DISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGD 104 (282)
T ss_pred eEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccCCHHH
Confidence 399999999999999999999999999998653211 1124567999999984 33445544
Q ss_pred ccccccCCC--CCCH----HHHHHHHHHccchhh----HhhCCccccccc-----------------ccCCCCHHHHHHH
Q 047286 145 GQYIPYGKQ--NASD----EHIRPAVQLANAEKS----IDKLPLGLDTVV-----------------ATNAVDAQSERIV 197 (632)
Q Consensus 145 ~~~i~~~~~--~~~~----~~~~~~~~~~~l~~~----i~~l~~g~~~~v-----------------~ts~LD~~~~~~i 197 (632)
|+.++.. ..+. +++.++++.+++.+. ...||+|+.+++ +|++||+.+++.+
T Consensus 105 --nl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l 182 (282)
T PRK13640 105 --DVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQI 182 (282)
T ss_pred --HHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHH
Confidence 6665421 1222 346677888887654 456788888777 3999999999999
Q ss_pred HHHHHHHhC--CceEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHhcC
Q 047286 198 QAAMVKLVT--NQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIED 246 (632)
Q Consensus 198 ~~~l~~~~~--~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~~ 246 (632)
.+.|+++.+ +.|+|++||+++.+..||++++|++|++++.|+++++...
T Consensus 183 ~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 233 (282)
T PRK13640 183 LKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFSK 233 (282)
T ss_pred HHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999998853 7899999999998888999999999999999999988653
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.4e-22 Score=197.05 Aligned_cols=159 Identities=23% Similarity=0.374 Sum_probs=124.2
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC---------------cH---HhhcceEEEcccCcccc-cccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA---------------PE---AEQEKIGLVSKEPIFLF-CDFNEG 145 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~---------------~~---~~r~~i~~v~Q~~~~~~-~~~~~~ 145 (632)
.+||++++||+++|+||||||||||+++|.|+.... +. ..++.++|++|++.+|. .++.+
T Consensus 23 ~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e- 101 (233)
T cd03258 23 DVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFE- 101 (233)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHH-
Confidence 389999999999999999999999999998653210 11 13567999999998765 35554
Q ss_pred cccccCC--CCC----CHHHHHHHHHHccchh----hHhhCCccccccc-----------------ccCCCCHHHHHHHH
Q 047286 146 QYIPYGK--QNA----SDEHIRPAVQLANAEK----SIDKLPLGLDTVV-----------------ATNAVDAQSERIVQ 198 (632)
Q Consensus 146 ~~i~~~~--~~~----~~~~~~~~~~~~~l~~----~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~ 198 (632)
|+.++. ... ..+++.++++..++.+ ....||+|+.+++ +|++||+.+++.+.
T Consensus 102 -~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~ 180 (233)
T cd03258 102 -NVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSIL 180 (233)
T ss_pred -HHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHH
Confidence 554321 111 1345667778777754 3567888988877 39999999999999
Q ss_pred HHHHHHh-C-CceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhc
Q 047286 199 AAMVKLV-T-NQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIE 245 (632)
Q Consensus 199 ~~l~~~~-~-~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~ 245 (632)
+.|+++. + ++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 181 ~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 181 ALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 9999885 3 7899999999998865 99999999999999999888754
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.3e-22 Score=198.83 Aligned_cols=165 Identities=21% Similarity=0.350 Sum_probs=126.5
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC-------C---------------cHHhhcceEEEcccCccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY-------A---------------PEAEQEKIGLVSKEPIFLFCDF 142 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~-------~---------------~~~~r~~i~~v~Q~~~~~~~~~ 142 (632)
.+||++++||+++|+||||||||||+++|.|+... . ....++.++|++|++.++..++
T Consensus 21 ~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv 100 (250)
T PRK14262 21 NVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSI 100 (250)
T ss_pred eeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCccCcccH
Confidence 39999999999999999999999999999965321 0 0123567999999998776555
Q ss_pred ccccccccCCC---CC----CHHHHHHHHHHccc--------hhhHhhCCcccccccc-----------------cCCCC
Q 047286 143 NEGQYIPYGKQ---NA----SDEHIRPAVQLANA--------EKSIDKLPLGLDTVVA-----------------TNAVD 190 (632)
Q Consensus 143 ~~~~~i~~~~~---~~----~~~~~~~~~~~~~l--------~~~i~~l~~g~~~~v~-----------------ts~LD 190 (632)
.+ |+.++.. .. .++++.++++..++ +..+..||.|..++++ |++||
T Consensus 101 ~e--~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD 178 (250)
T PRK14262 101 YD--NVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALD 178 (250)
T ss_pred HH--HHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccC
Confidence 54 5554211 11 12334556666554 3346778999888773 89999
Q ss_pred HHHHHHHHHHHHHHhCCceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhcCCCcHH
Q 047286 191 AQSERIVQAAMVKLVTNQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIEDPEGAY 251 (632)
Q Consensus 191 ~~~~~~i~~~l~~~~~~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~~~~~~~ 251 (632)
+.+++.+.+.|+++.+++|+|++||+++.+. .||++++|++|++++.|+++++.+.+...+
T Consensus 179 ~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~ 240 (250)
T PRK14262 179 PIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVERPKNKL 240 (250)
T ss_pred HHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHHhCCCChH
Confidence 9999999999999877789999999999765 599999999999999999999876543333
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=7e-22 Score=199.25 Aligned_cols=155 Identities=24% Similarity=0.272 Sum_probs=123.0
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC----------cHHhhcceEEEcccCcccc-cccccccccccCCC
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA----------PEAEQEKIGLVSKEPIFLF-CDFNEGQYIPYGKQ 153 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~----------~~~~r~~i~~v~Q~~~~~~-~~~~~~~~i~~~~~ 153 (632)
.+||+|++||+++|+||||||||||+++|.|+.... ....++.++|++|++.++. .++.+ |+.++..
T Consensus 30 ~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~e--nl~~~~~ 107 (257)
T PRK11247 30 QLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVID--NVGLGLK 107 (257)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHH--HHHhccc
Confidence 399999999999999999999999999998653211 1234667999999987654 35554 6655432
Q ss_pred CCCHHHHHHHHHHccchh----hHhhCCccccccc-----------------ccCCCCHHHHHHHHHHHHHHh--CCceE
Q 047286 154 NASDEHIRPAVQLANAEK----SIDKLPLGLDTVV-----------------ATNAVDAQSERIVQAAMVKLV--TNQTV 210 (632)
Q Consensus 154 ~~~~~~~~~~~~~~~l~~----~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l~~~~--~~~tv 210 (632)
....+++.++++..++.+ .+..||+|+.+++ +|++||+.+++.+.+.|+++. .++|+
T Consensus 108 ~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tv 187 (257)
T PRK11247 108 GQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTV 187 (257)
T ss_pred chHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 223456778888887754 4667889998877 399999999999999999874 36899
Q ss_pred EEEecCchHHh-hcCeEEEEeCCeEEEecChh
Q 047286 211 VIVANCLITIR-NADCIIMVSKGKIVEKGTHD 241 (632)
Q Consensus 211 iiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~ 241 (632)
|++||+++.+. .||+|++|++|+++++++.+
T Consensus 188 iivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 188 LLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred EEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 99999999875 59999999999999988765
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.5e-22 Score=198.28 Aligned_cols=162 Identities=23% Similarity=0.334 Sum_probs=125.0
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC---------------------CcHHhhcceEEEcccCcccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY---------------------APEAEQEKIGLVSKEPIFLFCDFN 143 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~---------------------~~~~~r~~i~~v~Q~~~~~~~~~~ 143 (632)
.+||++++||+++|+||||||||||+++|.|.... ++...++.++|++|++.+|..++.
T Consensus 21 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 100 (249)
T PRK14253 21 SINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFPMSIY 100 (249)
T ss_pred cceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcCcccHH
Confidence 39999999999999999999999999999865321 112346679999999987765554
Q ss_pred cccccccCCC--CC-C----HHHHHHHHHHccch--------hhHhhCCccccccc-----------------ccCCCCH
Q 047286 144 EGQYIPYGKQ--NA-S----DEHIRPAVQLANAE--------KSIDKLPLGLDTVV-----------------ATNAVDA 191 (632)
Q Consensus 144 ~~~~i~~~~~--~~-~----~~~~~~~~~~~~l~--------~~i~~l~~g~~~~v-----------------~ts~LD~ 191 (632)
+ |+.++.. .. . .+++.++++..++. .....||+|..+++ +|++||+
T Consensus 101 ~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~ 178 (249)
T PRK14253 101 E--NVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDP 178 (249)
T ss_pred H--HHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCH
Confidence 4 5554311 11 1 23345556665543 23456888888777 3999999
Q ss_pred HHHHHHHHHHHHHhCCceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcCCC
Q 047286 192 QSERIVQAAMVKLVTNQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIEDPE 248 (632)
Q Consensus 192 ~~~~~i~~~l~~~~~~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~~~ 248 (632)
.+++.+.+.|+++.++.|+|++||+++.+.. ||++++|++|++++.|+.+++...+.
T Consensus 179 ~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 236 (249)
T PRK14253 179 IATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFSNPK 236 (249)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHcCCC
Confidence 9999999999998777899999999998775 99999999999999999998865433
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.7e-22 Score=193.21 Aligned_cols=149 Identities=23% Similarity=0.331 Sum_probs=120.8
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC---------------CcHHhhcceEEEcccCcccccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY---------------APEAEQEKIGLVSKEPIFLFCDFNEGQYIP 149 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~---------------~~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~ 149 (632)
.+||++++|++++|+||||||||||+++|.|+... .....++.++|++|++.++..++.+ |+.
T Consensus 26 ~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~--~l~ 103 (207)
T cd03369 26 NVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRS--NLD 103 (207)
T ss_pred CceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccCccHHH--Hhc
Confidence 49999999999999999999999999999865321 1123467899999999877766655 565
Q ss_pred cCCCCCCHHHHHHHHHHccchhhHhhCCcccccccc-----------------cCCCCHHHHHHHHHHHHHHhCCceEEE
Q 047286 150 YGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVVA-----------------TNAVDAQSERIVQAAMVKLVTNQTVVI 212 (632)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~~l~~~~~~~tvii 212 (632)
+.. ....+++.++++ ++.....||.|..++++ |++||+.+++.+.+.|+++.++.|+|+
T Consensus 104 ~~~-~~~~~~~~~~l~---~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii 179 (207)
T cd03369 104 PFD-EYSDEEIYGALR---VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILT 179 (207)
T ss_pred ccC-CCCHHHHHHHhh---ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 432 234455555554 56677889999988773 899999999999999999877889999
Q ss_pred EecCchHHhhcCeEEEEeCCeEEEecC
Q 047286 213 VANCLITIRNADCIIMVSKGKIVEKGT 239 (632)
Q Consensus 213 itH~~~~~~~aD~i~vl~~G~i~~~g~ 239 (632)
+||+++.+..||++++|++|++++.|+
T Consensus 180 ~th~~~~~~~~d~v~~l~~g~i~~~g~ 206 (207)
T cd03369 180 IAHRLRTIIDYDKILVMDAGEVKEYDH 206 (207)
T ss_pred EeCCHHHHhhCCEEEEEECCEEEecCC
Confidence 999999887799999999999998875
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.7e-22 Score=202.25 Aligned_cols=160 Identities=27% Similarity=0.389 Sum_probs=125.9
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC---------------cHHhhcceEEEcccCc--ccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA---------------PEAEQEKIGLVSKEPI--FLFCDFNEGQY 147 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~---------------~~~~r~~i~~v~Q~~~--~~~~~~~~~~~ 147 (632)
.+||+|++||+++|+||||||||||+++|+|..... ....++.++|++|++. ++..++.+ |
T Consensus 25 ~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e--n 102 (279)
T PRK13635 25 DVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQD--D 102 (279)
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHH--H
Confidence 399999999999999999999999999998653211 1234667999999983 34445655 5
Q ss_pred cccCCC--CCC----HHHHHHHHHHccchhh----HhhCCccccccc-----------------ccCCCCHHHHHHHHHH
Q 047286 148 IPYGKQ--NAS----DEHIRPAVQLANAEKS----IDKLPLGLDTVV-----------------ATNAVDAQSERIVQAA 200 (632)
Q Consensus 148 i~~~~~--~~~----~~~~~~~~~~~~l~~~----i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~ 200 (632)
+.++.. ... .+++.++++.+++.+. +..||+|+.+++ +|++||+.+++.+.+.
T Consensus 103 l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~ 182 (279)
T PRK13635 103 VAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLET 182 (279)
T ss_pred HhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 655321 112 2446777888787654 456778887777 3999999999999999
Q ss_pred HHHHhC--CceEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHhcC
Q 047286 201 MVKLVT--NQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIED 246 (632)
Q Consensus 201 l~~~~~--~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~~ 246 (632)
|+++.+ +.|+|++||+++.+..||+|++|++|++++.|+.+++...
T Consensus 183 l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 183 VRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred HHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 999864 6899999999998888999999999999999999988654
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.3e-22 Score=197.87 Aligned_cols=159 Identities=15% Similarity=0.261 Sum_probs=125.0
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC---------------cH-HhhcceEEEcccCccccc-ccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA---------------PE-AEQEKIGLVSKEPIFLFC-DFNEGQY 147 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~---------------~~-~~r~~i~~v~Q~~~~~~~-~~~~~~~ 147 (632)
.+||++++||+++|+||||||||||+++|.|..... +. ..++.++|++|++.++.. ++.+ |
T Consensus 20 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~--n 97 (242)
T TIGR03411 20 DLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFE--N 97 (242)
T ss_pred eeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHHH--H
Confidence 399999999999999999999999999998653211 11 123569999999877654 5554 4
Q ss_pred cccCCC--------------CCCHHHHHHHHHHccch----hhHhhCCccccccc-----------------ccCCCCHH
Q 047286 148 IPYGKQ--------------NASDEHIRPAVQLANAE----KSIDKLPLGLDTVV-----------------ATNAVDAQ 192 (632)
Q Consensus 148 i~~~~~--------------~~~~~~~~~~~~~~~l~----~~i~~l~~g~~~~v-----------------~ts~LD~~ 192 (632)
+.++.. ....+++.++++..++. ..+..||+|..+++ +|++||+.
T Consensus 98 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~ 177 (242)
T TIGR03411 98 LELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDE 177 (242)
T ss_pred HHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHH
Confidence 544211 01234566777777764 34677899998877 39999999
Q ss_pred HHHHHHHHHHHHhCCceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhc
Q 047286 193 SERIVQAAMVKLVTNQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIE 245 (632)
Q Consensus 193 ~~~~i~~~l~~~~~~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~ 245 (632)
+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 178 ~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 178 ETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred HHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence 999999999998778899999999999865 99999999999999999998864
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-21 Score=199.00 Aligned_cols=164 Identities=22% Similarity=0.330 Sum_probs=126.4
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC----------------------CcHHhhcceEEEcccCccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY----------------------APEAEQEKIGLVSKEPIFLFCDF 142 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~----------------------~~~~~r~~i~~v~Q~~~~~~~~~ 142 (632)
.+||+|++||+++|+||||||||||+++|.|+... .+...+++++|++|++.++..++
T Consensus 28 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv 107 (264)
T PRK14243 28 NVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPKSI 107 (264)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCccccccH
Confidence 39999999999999999999999999999865210 01224667999999998776555
Q ss_pred ccccccccCCC--C---CCHHHHHHHHHHccch--------hhHhhCCccccccc-----------------ccCCCCHH
Q 047286 143 NEGQYIPYGKQ--N---ASDEHIRPAVQLANAE--------KSIDKLPLGLDTVV-----------------ATNAVDAQ 192 (632)
Q Consensus 143 ~~~~~i~~~~~--~---~~~~~~~~~~~~~~l~--------~~i~~l~~g~~~~v-----------------~ts~LD~~ 192 (632)
.+ |+.++.. . ...+++.++++.+++. ....+||+|..+++ +|++||+.
T Consensus 108 ~e--nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~ 185 (264)
T PRK14243 108 YD--NIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPI 185 (264)
T ss_pred HH--HHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHH
Confidence 54 5654321 1 1123445556665542 23556889988877 39999999
Q ss_pred HHHHHHHHHHHHhCCceEEEEecCchHHhh-cCeEEEEe---------CCeEEEecChhHHhcCCCcH
Q 047286 193 SERIVQAAMVKLVTNQTVVIVANCLITIRN-ADCIIMVS---------KGKIVEKGTHDELIEDPEGA 250 (632)
Q Consensus 193 ~~~~i~~~l~~~~~~~tviiitH~~~~~~~-aD~i~vl~---------~G~i~~~g~~~el~~~~~~~ 250 (632)
+++.+.+.|.++.++.|+|++||+++.+.. ||++++|+ +|++++.|+++++.+.+...
T Consensus 186 ~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~ 253 (264)
T PRK14243 186 STLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEFDRTEKIFNSPQQQ 253 (264)
T ss_pred HHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEeCCHHHHHhCCCcH
Confidence 999999999998777899999999998765 99999998 89999999999997664443
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.6e-22 Score=201.86 Aligned_cols=160 Identities=26% Similarity=0.388 Sum_probs=125.9
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC---------------C-cHHhhcceEEEcccCc--cccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY---------------A-PEAEQEKIGLVSKEPI--FLFCDFNEGQ 146 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~---------------~-~~~~r~~i~~v~Q~~~--~~~~~~~~~~ 146 (632)
.+||+|++||+++|+||||||||||+++|+|+... . ....++.++|++|+|. ++..++.+
T Consensus 20 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e-- 97 (274)
T PRK13644 20 NINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEE-- 97 (274)
T ss_pred eeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccchHHH--
Confidence 49999999999999999999999999999875321 0 1234567999999985 33445554
Q ss_pred ccccCCCC--CC----HHHHHHHHHHccchh----hHhhCCccccccc-----------------ccCCCCHHHHHHHHH
Q 047286 147 YIPYGKQN--AS----DEHIRPAVQLANAEK----SIDKLPLGLDTVV-----------------ATNAVDAQSERIVQA 199 (632)
Q Consensus 147 ~i~~~~~~--~~----~~~~~~~~~~~~l~~----~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~ 199 (632)
|+.++... .+ .+++.++++..++.+ .+..||+|+.+++ +|++||+.++..+++
T Consensus 98 nl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~ 177 (274)
T PRK13644 98 DLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLE 177 (274)
T ss_pred HHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 56554211 12 344667777777754 4566888988877 399999999999999
Q ss_pred HHHHHh-CCceEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHhcC
Q 047286 200 AMVKLV-TNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIED 246 (632)
Q Consensus 200 ~l~~~~-~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~~ 246 (632)
.++++. ++.|+|++||+++.+..||++++|++|++++.|+++++...
T Consensus 178 ~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 178 RIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred HHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 999885 47899999999999888999999999999999999988654
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.8e-22 Score=198.22 Aligned_cols=157 Identities=22% Similarity=0.296 Sum_probs=122.7
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC---------------c---HHhhcceEEEcccCcccc-cccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA---------------P---EAEQEKIGLVSKEPIFLF-CDFNEG 145 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~---------------~---~~~r~~i~~v~Q~~~~~~-~~~~~~ 145 (632)
.+||++++|++++|+||||||||||+++|.|+.... + ...++.++|++|++.++. .++.+
T Consensus 20 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~- 98 (243)
T TIGR02315 20 NINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLE- 98 (243)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccHHH-
Confidence 399999999999999999999999999998653210 0 124667999999987664 35544
Q ss_pred cccccCCC--------------CCCHHHHHHHHHHccchh----hHhhCCccccccc-----------------ccCCCC
Q 047286 146 QYIPYGKQ--------------NASDEHIRPAVQLANAEK----SIDKLPLGLDTVV-----------------ATNAVD 190 (632)
Q Consensus 146 ~~i~~~~~--------------~~~~~~~~~~~~~~~l~~----~i~~l~~g~~~~v-----------------~ts~LD 190 (632)
|+.++.. ....+++.++++..++.+ ....||+|+.+++ +|++||
T Consensus 99 -~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD 177 (243)
T TIGR02315 99 -NVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLD 177 (243)
T ss_pred -HHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 5543211 112345667777777654 3567889998877 399999
Q ss_pred HHHHHHHHHHHHHHh-C-CceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHH
Q 047286 191 AQSERIVQAAMVKLV-T-NQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDEL 243 (632)
Q Consensus 191 ~~~~~~i~~~l~~~~-~-~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el 243 (632)
+.+++.+.+.|+++. + ++|+|++||+++.+. .||++++|++|++++.|+++++
T Consensus 178 ~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 178 PKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL 233 (243)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHh
Confidence 999999999999885 3 689999999999885 5999999999999999998886
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-21 Score=200.26 Aligned_cols=161 Identities=24% Similarity=0.338 Sum_probs=126.3
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC-------C---------------cHHhhcceEEEcccCcccccccc
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY-------A---------------PEAEQEKIGLVSKEPIFLFCDFN 143 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~-------~---------------~~~~r~~i~~v~Q~~~~~~~~~~ 143 (632)
+||+|++||+++|+||||||||||+++|.|.... . ....++.++|++|++.+|..++.
T Consensus 44 vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~ 123 (272)
T PRK14236 44 ISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIY 123 (272)
T ss_pred EEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCccCcccHH
Confidence 9999999999999999999999999999876321 0 11246789999999987766655
Q ss_pred cccccccCC--CC--C---CHHHHHHHHHHccch--------hhHhhCCcccccccc-----------------cCCCCH
Q 047286 144 EGQYIPYGK--QN--A---SDEHIRPAVQLANAE--------KSIDKLPLGLDTVVA-----------------TNAVDA 191 (632)
Q Consensus 144 ~~~~i~~~~--~~--~---~~~~~~~~~~~~~l~--------~~i~~l~~g~~~~v~-----------------ts~LD~ 191 (632)
+ |+.++. .. . ..+++.++++.+++. .....||+|..++++ |++||+
T Consensus 124 e--nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~ 201 (272)
T PRK14236 124 E--NVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDP 201 (272)
T ss_pred H--HHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCH
Confidence 5 555431 11 1 123456667766653 335678899888773 999999
Q ss_pred HHHHHHHHHHHHHhCCceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhcCCC
Q 047286 192 QSERIVQAAMVKLVTNQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIEDPE 248 (632)
Q Consensus 192 ~~~~~i~~~l~~~~~~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~~~~ 248 (632)
.+++.+.+.|+++.++.|+|++||+++.+. .||++++|++|++++.|+++++...+.
T Consensus 202 ~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 259 (272)
T PRK14236 202 ISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTLFTSPA 259 (272)
T ss_pred HHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHHHhcCCC
Confidence 999999999999877789999999999875 599999999999999999999875533
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-21 Score=198.06 Aligned_cols=161 Identities=20% Similarity=0.263 Sum_probs=125.5
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC----------------------------cHHhhcceEEEcccCc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA----------------------------PEAEQEKIGLVSKEPI 136 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~----------------------------~~~~r~~i~~v~Q~~~ 136 (632)
.+||++++||+++|+||||||||||+++|.|..... ....++.++|++|++.
T Consensus 23 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~ 102 (257)
T PRK10619 23 GVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFN 102 (257)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEEEecCcc
Confidence 399999999999999999999999999998653211 0123567999999997
Q ss_pred cccc-ccccccccccCC---CCC----CHHHHHHHHHHccchhh-----HhhCCccccccc-----------------cc
Q 047286 137 FLFC-DFNEGQYIPYGK---QNA----SDEHIRPAVQLANAEKS-----IDKLPLGLDTVV-----------------AT 186 (632)
Q Consensus 137 ~~~~-~~~~~~~i~~~~---~~~----~~~~~~~~~~~~~l~~~-----i~~l~~g~~~~v-----------------~t 186 (632)
++.. ++.+ |+.++. ... ..+++.++++..++.+. ...||+|..+++ +|
T Consensus 103 l~~~~sv~e--nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 180 (257)
T PRK10619 103 LWSHMTVLE--NVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPT 180 (257)
T ss_pred cCCCCcHHH--HHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 6643 4444 554321 111 13456677777776543 467889988877 39
Q ss_pred CCCCHHHHHHHHHHHHHHh-CCceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcCC
Q 047286 187 NAVDAQSERIVQAAMVKLV-TNQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIEDP 247 (632)
Q Consensus 187 s~LD~~~~~~i~~~l~~~~-~~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~~ 247 (632)
++||+.+++.+.+.|+++. +++|+|++||++..+.. ||+|++|++|++++.|+++++...+
T Consensus 181 ~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 243 (257)
T PRK10619 181 SALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGNP 243 (257)
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhhhCc
Confidence 9999999999999999985 47899999999999875 9999999999999999999986543
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-21 Score=199.63 Aligned_cols=161 Identities=17% Similarity=0.255 Sum_probs=124.9
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC---------------c---HHhhcceEEEcccCccccc-ccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA---------------P---EAEQEKIGLVSKEPIFLFC-DFNEG 145 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~---------------~---~~~r~~i~~v~Q~~~~~~~-~~~~~ 145 (632)
.+||+|++|++++|+||||||||||+++|.|+.... + ...++.++|++|++.++.. ++.+
T Consensus 25 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e- 103 (269)
T PRK11831 25 NISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFD- 103 (269)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCHHH-
Confidence 399999999999999999999999999998653211 1 0135679999999876653 5544
Q ss_pred cccccCC---CCCC----HHHHHHHHHHccchh----hHhhCCccccccc-----------------ccCCCCHHHHHHH
Q 047286 146 QYIPYGK---QNAS----DEHIRPAVQLANAEK----SIDKLPLGLDTVV-----------------ATNAVDAQSERIV 197 (632)
Q Consensus 146 ~~i~~~~---~~~~----~~~~~~~~~~~~l~~----~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i 197 (632)
|+.++. ...+ .+++.++++..++.+ .+..||+|+.+++ +|++||+.+++.+
T Consensus 104 -nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l 182 (269)
T PRK11831 104 -NVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVL 182 (269)
T ss_pred -HHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHH
Confidence 554321 1111 234556677777653 4677999998877 3999999999999
Q ss_pred HHHHHHHhC--CceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcCC
Q 047286 198 QAAMVKLVT--NQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIEDP 247 (632)
Q Consensus 198 ~~~l~~~~~--~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~~ 247 (632)
.+.|+++.+ +.|+|++||++..+.. ||++++|++|++++.|+++++.+.+
T Consensus 183 ~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 235 (269)
T PRK11831 183 VKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQANP 235 (269)
T ss_pred HHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhcCC
Confidence 999999853 6899999999988865 9999999999999999999987653
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-21 Score=198.07 Aligned_cols=165 Identities=25% Similarity=0.325 Sum_probs=127.0
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC-----------------------cHHhhcceEEEcccCcccc-c
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA-----------------------PEAEQEKIGLVSKEPIFLF-C 140 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~-----------------------~~~~r~~i~~v~Q~~~~~~-~ 140 (632)
.+||++++|++++|+||||||||||+++|.|..... +...++.++|++|++.++. .
T Consensus 21 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 100 (250)
T PRK11264 21 GIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHR 100 (250)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcccCCCC
Confidence 399999999999999999999999999998653210 0224568999999987664 3
Q ss_pred ccccccccccCC---CCCC----HHHHHHHHHHccchh----hHhhCCccccccc-----------------ccCCCCHH
Q 047286 141 DFNEGQYIPYGK---QNAS----DEHIRPAVQLANAEK----SIDKLPLGLDTVV-----------------ATNAVDAQ 192 (632)
Q Consensus 141 ~~~~~~~i~~~~---~~~~----~~~~~~~~~~~~l~~----~i~~l~~g~~~~v-----------------~ts~LD~~ 192 (632)
++.+ |+.++. .... .+++.++++..++.+ ...+||+|+.+++ +|++||+.
T Consensus 101 tv~e--~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~ 178 (250)
T PRK11264 101 TVLE--NIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPE 178 (250)
T ss_pred CHHH--HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHH
Confidence 5555 554321 1111 234566677777643 4677999998887 39999999
Q ss_pred HHHHHHHHHHHHhC-CceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcCCCcHH
Q 047286 193 SERIVQAAMVKLVT-NQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIEDPEGAY 251 (632)
Q Consensus 193 ~~~~i~~~l~~~~~-~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~~~~~~ 251 (632)
+++.+.+.|+++.+ +.|+|++||++..+.. ||++++|++|++++.|+++++...+...+
T Consensus 179 ~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~ 239 (250)
T PRK11264 179 LVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFADPQQPR 239 (250)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcCCCCHH
Confidence 99999999998864 7899999999998865 99999999999999999999876544333
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.2e-22 Score=204.11 Aligned_cols=160 Identities=17% Similarity=0.288 Sum_probs=124.7
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC--------------cHHhhcceEEEcccCcccc-cccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA--------------PEAEQEKIGLVSKEPIFLF-CDFNEGQYIP 149 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~--------------~~~~r~~i~~v~Q~~~~~~-~~~~~~~~i~ 149 (632)
.+||+|++|++++|+||||||||||+++|.|+.... +...++.++|++|++.++. .++.+ |+.
T Consensus 22 ~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e--~l~ 99 (303)
T TIGR01288 22 DLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRE--NLL 99 (303)
T ss_pred ceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHH--HHH
Confidence 399999999999999999999999999998753211 1224678999999987653 34444 554
Q ss_pred cC-C-CCCC----HHHHHHHHHHccch----hhHhhCCccccccc-----------------ccCCCCHHHHHHHHHHHH
Q 047286 150 YG-K-QNAS----DEHIRPAVQLANAE----KSIDKLPLGLDTVV-----------------ATNAVDAQSERIVQAAMV 202 (632)
Q Consensus 150 ~~-~-~~~~----~~~~~~~~~~~~l~----~~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l~ 202 (632)
+. . ...+ .+++.++++.+++. ..+..||+|+++++ +|++||+.+++.+.+.|+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~ 179 (303)
T TIGR01288 100 VFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLR 179 (303)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHH
Confidence 21 1 1112 23455667777764 45678999998887 399999999999999999
Q ss_pred HHh-CCceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcC
Q 047286 203 KLV-TNQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIED 246 (632)
Q Consensus 203 ~~~-~~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~ 246 (632)
++. ++.|+|++||+++.+.. ||++++|++|+++..|+++++...
T Consensus 180 ~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 180 SLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred HHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 985 47899999999998865 999999999999999999998643
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-21 Score=198.86 Aligned_cols=162 Identities=21% Similarity=0.336 Sum_probs=125.8
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC----------------------cHHhhcceEEEcccCcccccccc
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA----------------------PEAEQEKIGLVSKEPIFLFCDFN 143 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~----------------------~~~~r~~i~~v~Q~~~~~~~~~~ 143 (632)
+||+|++||+++|+||||||||||+++|.|+.... ....++.++|++|++.++..++.
T Consensus 39 vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~tv~ 118 (274)
T PRK14265 39 VHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPKSIY 118 (274)
T ss_pred eeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCccccccHH
Confidence 99999999999999999999999999998753210 11246789999999987765554
Q ss_pred cccccccCCCC-----CCHHHHHHHHHHccc--------hhhHhhCCcccccccc-----------------cCCCCHHH
Q 047286 144 EGQYIPYGKQN-----ASDEHIRPAVQLANA--------EKSIDKLPLGLDTVVA-----------------TNAVDAQS 193 (632)
Q Consensus 144 ~~~~i~~~~~~-----~~~~~~~~~~~~~~l--------~~~i~~l~~g~~~~v~-----------------ts~LD~~~ 193 (632)
+ |+.++... ..++.+.++++.+++ +.....||+|..++++ |++||+.+
T Consensus 119 ~--nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~ 196 (274)
T PRK14265 119 E--NIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPIS 196 (274)
T ss_pred H--HHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHH
Confidence 4 56543210 112334556666654 2334568889888773 99999999
Q ss_pred HHHHHHHHHHHhCCceEEEEecCchHHhh-cCeEEEEe---------CCeEEEecChhHHhcCCCc
Q 047286 194 ERIVQAAMVKLVTNQTVVIVANCLITIRN-ADCIIMVS---------KGKIVEKGTHDELIEDPEG 249 (632)
Q Consensus 194 ~~~i~~~l~~~~~~~tviiitH~~~~~~~-aD~i~vl~---------~G~i~~~g~~~el~~~~~~ 249 (632)
++.+.+.|+++.++.|+|++||+++.+.. ||++++|+ +|++++.|+++++...+..
T Consensus 197 ~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~~~~~~~~~~~ 262 (274)
T PRK14265 197 TRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQMFGSPQT 262 (274)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEEeCCHHHHHhCCCC
Confidence 99999999998777899999999998864 99999998 8999999999998765443
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.4e-22 Score=192.31 Aligned_cols=149 Identities=17% Similarity=0.292 Sum_probs=117.0
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCc------------HHhhcceEEEcccCc--cccccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAP------------EAEQEKIGLVSKEPI--FLFCDFNEGQYIPY 150 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~------------~~~r~~i~~v~Q~~~--~~~~~~~~~~~i~~ 150 (632)
.+||++++||+++|+||||||||||+++|.|+..... ...++.++|++|++. ++..++.+ |+.+
T Consensus 18 ~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e--~l~~ 95 (205)
T cd03226 18 DLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVRE--ELLL 95 (205)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHH--HHhh
Confidence 3999999999999999999999999999986532110 123567999999973 34455555 5655
Q ss_pred CCC--CCCHHHHHHHHHHccchh----hHhhCCccccccc-----------------ccCCCCHHHHHHHHHHHHHHh-C
Q 047286 151 GKQ--NASDEHIRPAVQLANAEK----SIDKLPLGLDTVV-----------------ATNAVDAQSERIVQAAMVKLV-T 206 (632)
Q Consensus 151 ~~~--~~~~~~~~~~~~~~~l~~----~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l~~~~-~ 206 (632)
+.. ....+++.++++.+++.+ .+..||+|+++++ +|++||+.+++.+.+.|+++. +
T Consensus 96 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 175 (205)
T cd03226 96 GLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQ 175 (205)
T ss_pred hhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHC
Confidence 422 122356788888888754 4567888988877 399999999999999999884 5
Q ss_pred CceEEEEecCchHHhh-cCeEEEEeCCeEE
Q 047286 207 NQTVVIVANCLITIRN-ADCIIMVSKGKIV 235 (632)
Q Consensus 207 ~~tviiitH~~~~~~~-aD~i~vl~~G~i~ 235 (632)
+.|+|++||+++.+.. ||++++|++|+++
T Consensus 176 ~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 176 GKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 7899999999998865 9999999999975
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-21 Score=195.11 Aligned_cols=167 Identities=23% Similarity=0.259 Sum_probs=125.8
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC----CcH------------Hh-hcceEEEcccCc-ccccccccccc
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY----APE------------AE-QEKIGLVSKEPI-FLFCDFNEGQY 147 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~----~~~------------~~-r~~i~~v~Q~~~-~~~~~~~~~~~ 147 (632)
+||++++|++++|+||||||||||+++|+|+... ... .. ++.++|++|++. .|+...+..+|
T Consensus 5 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~~~ 84 (230)
T TIGR02770 5 LNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMGNH 84 (230)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHHHH
Confidence 8999999999999999999999999999976432 111 11 357999999984 34433322223
Q ss_pred ccc-----CCCC-CCHHHHHHHHHHccch-------hhHhhCCcccccccc-----------------cCCCCHHHHHHH
Q 047286 148 IPY-----GKQN-ASDEHIRPAVQLANAE-------KSIDKLPLGLDTVVA-----------------TNAVDAQSERIV 197 (632)
Q Consensus 148 i~~-----~~~~-~~~~~~~~~~~~~~l~-------~~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i 197 (632)
+.+ +... ...+++.++++.+++. ..+..||+|.+++++ |++||+.+++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l 164 (230)
T TIGR02770 85 AIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARV 164 (230)
T ss_pred HHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHH
Confidence 321 1111 1234567788887775 346679999988773 999999999999
Q ss_pred HHHHHHHhC--CceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhcCCCcHHH
Q 047286 198 QAAMVKLVT--NQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIEDPEGAYS 252 (632)
Q Consensus 198 ~~~l~~~~~--~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~~~~~~~~ 252 (632)
.+.|+++.+ ++|+|++||+++.+. .||++++|++|++++.|+++++...+...+.
T Consensus 165 ~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~ 222 (230)
T TIGR02770 165 LKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETT 222 (230)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcCCHHH
Confidence 999998853 689999999999886 4999999999999999999999765444443
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-21 Score=198.75 Aligned_cols=167 Identities=19% Similarity=0.225 Sum_probs=126.4
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC---------------cH---HhhcceEEEcccCc-ccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA---------------PE---AEQEKIGLVSKEPI-FLFCDFNEG 145 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~---------------~~---~~r~~i~~v~Q~~~-~~~~~~~~~ 145 (632)
.+||+|++||+++|+||||||||||+++|.|+.... .. ..++.++|++|++. .++...+..
T Consensus 29 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~ 108 (265)
T TIGR02769 29 NVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVR 108 (265)
T ss_pred CceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHH
Confidence 399999999999999999999999999998653211 11 13567999999973 233323333
Q ss_pred cccccCC-------CCCCHHHHHHHHHHccch-----hhHhhCCcccccccc-----------------cCCCCHHHHHH
Q 047286 146 QYIPYGK-------QNASDEHIRPAVQLANAE-----KSIDKLPLGLDTVVA-----------------TNAVDAQSERI 196 (632)
Q Consensus 146 ~~i~~~~-------~~~~~~~~~~~~~~~~l~-----~~i~~l~~g~~~~v~-----------------ts~LD~~~~~~ 196 (632)
+|+.+.. .....+++.++++..++. .....||+|+.++++ |++||+.+++.
T Consensus 109 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~ 188 (265)
T TIGR02769 109 QIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAV 188 (265)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 3443210 111234567778887764 346789999988773 89999999999
Q ss_pred HHHHHHHHhC--CceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhcCCCcHHH
Q 047286 197 VQAAMVKLVT--NQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIEDPEGAYS 252 (632)
Q Consensus 197 i~~~l~~~~~--~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~~~~~~~~ 252 (632)
+.+.|+++.+ ++|+|++||+++.+. .||++++|++|++++.|+++++... .++|.
T Consensus 189 l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~-~~~~~ 246 (265)
T TIGR02769 189 ILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLLSF-KHPAG 246 (265)
T ss_pred HHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCHHHHcCC-CCHHH
Confidence 9999999853 789999999999886 4999999999999999999999764 44444
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-21 Score=199.59 Aligned_cols=163 Identities=18% Similarity=0.288 Sum_probs=126.7
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC---------------------CcHHhhcceEEEcccCcccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY---------------------APEAEQEKIGLVSKEPIFLFCDFN 143 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~---------------------~~~~~r~~i~~v~Q~~~~~~~~~~ 143 (632)
.+||+|++||+++|+||||||||||+++|.|+... .+..+++.++|++|++.+|..++.
T Consensus 39 ~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~~tv~ 118 (276)
T PRK14271 39 QVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFPMSIM 118 (276)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccCCccHH
Confidence 39999999999999999999999999999875321 011346789999999987776665
Q ss_pred cccccccCC---CCCCHHH----HHHHHHHccchh--------hHhhCCccccccc-----------------ccCCCCH
Q 047286 144 EGQYIPYGK---QNASDEH----IRPAVQLANAEK--------SIDKLPLGLDTVV-----------------ATNAVDA 191 (632)
Q Consensus 144 ~~~~i~~~~---~~~~~~~----~~~~~~~~~l~~--------~i~~l~~g~~~~v-----------------~ts~LD~ 191 (632)
+ |+.++. ...+.++ +.+.++.+++.+ ....||.|..+++ +|++||+
T Consensus 119 e--ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~ 196 (276)
T PRK14271 119 D--NVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDP 196 (276)
T ss_pred H--HHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence 5 555431 1122222 344556666542 3567899988877 3999999
Q ss_pred HHHHHHHHHHHHHhCCceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcCCCc
Q 047286 192 QSERIVQAAMVKLVTNQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIEDPEG 249 (632)
Q Consensus 192 ~~~~~i~~~l~~~~~~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~~~~ 249 (632)
.+++.+.+.|+++.++.|+|++||++..+.. ||++++|++|++++.|+++++.+.+..
T Consensus 197 ~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~ 255 (276)
T PRK14271 197 TTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSSPKH 255 (276)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcCc
Confidence 9999999999998767899999999998765 999999999999999999999765443
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.2e-22 Score=176.99 Aligned_cols=150 Identities=23% Similarity=0.356 Sum_probs=123.3
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCC---------------CCCcHHhhcceEEEcccCcccccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFR---------------FYAPEAEQEKIGLVSKEPIFLFCDFNEGQYIP 149 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~---------------~~~~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~ 149 (632)
.+||++.+||+.+|.||||||||||+|.++.+. .++|...|.+++||.|.|.+|.+++.+|..++
T Consensus 21 ~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVeDNlifP 100 (223)
T COG4619 21 NISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIFP 100 (223)
T ss_pred ceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchhhccccc
Confidence 399999999999999999999999999886431 34677899999999999999999999854333
Q ss_pred cC--CCCCCHHHHHHHHHHccc-----hhhHhhCCcccccccc-----------------cCCCCHHHHHHHHHHHHHHh
Q 047286 150 YG--KQNASDEHIRPAVQLANA-----EKSIDKLPLGLDTVVA-----------------TNAVDAQSERIVQAAMVKLV 205 (632)
Q Consensus 150 ~~--~~~~~~~~~~~~~~~~~l-----~~~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~~l~~~~ 205 (632)
+. ++..+.......++.+++ .+.+..|++|..++++ ||+||+.+++.|.+.|.++.
T Consensus 101 ~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v 180 (223)
T COG4619 101 WQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYV 180 (223)
T ss_pred hHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHh
Confidence 32 223455555666666654 4567889999998884 99999999999999999985
Q ss_pred --CCceEEEEecCchH-HhhcCeEEEEeCCeE
Q 047286 206 --TNQTVVIVANCLIT-IRNADCIIMVSKGKI 234 (632)
Q Consensus 206 --~~~tviiitH~~~~-~~~aD~i~vl~~G~i 234 (632)
++..++.|||+... ++++|+++-+..|++
T Consensus 181 ~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 181 REQNVAVLWITHDKDQAIRHADKVITLQPGHA 212 (223)
T ss_pred hhhceEEEEEecChHHHhhhhheEEEeccCcc
Confidence 46799999999977 788999999999976
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-21 Score=198.03 Aligned_cols=164 Identities=21% Similarity=0.278 Sum_probs=127.7
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC------------------------cHHhhcceEEEcccCcccccc
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA------------------------PEAEQEKIGLVSKEPIFLFCD 141 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~------------------------~~~~r~~i~~v~Q~~~~~~~~ 141 (632)
+||+|++||+++|+||||||||||+++|.|+.... +..+++.++|++|++.+|..+
T Consensus 35 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~t 114 (265)
T PRK14252 35 INMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPKS 114 (265)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCCcCCcch
Confidence 99999999999999999999999999998753210 012456799999999877766
Q ss_pred cccccccccCCC--C-----CCHHHHHHHHHHccch--------hhHhhCCccccccc-----------------ccCCC
Q 047286 142 FNEGQYIPYGKQ--N-----ASDEHIRPAVQLANAE--------KSIDKLPLGLDTVV-----------------ATNAV 189 (632)
Q Consensus 142 ~~~~~~i~~~~~--~-----~~~~~~~~~~~~~~l~--------~~i~~l~~g~~~~v-----------------~ts~L 189 (632)
+.+ |+.++.. . ..++++.++++.+++. .....||.|..+++ +|++|
T Consensus 115 v~e--ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gL 192 (265)
T PRK14252 115 IFE--NVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSAL 192 (265)
T ss_pred HHH--HHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccC
Confidence 554 5554311 1 1134556677766652 33466888988777 39999
Q ss_pred CHHHHHHHHHHHHHHhCCceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhcCCCcHH
Q 047286 190 DAQSERIVQAAMVKLVTNQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIEDPEGAY 251 (632)
Q Consensus 190 D~~~~~~i~~~l~~~~~~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~~~~~~~ 251 (632)
|+.+++.+.+.|+++.++.|+|++||+++.+. .||++++|++|++++.|+.+++...+...|
T Consensus 193 D~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~ 255 (265)
T PRK14252 193 DPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTIFIKPKNKQ 255 (265)
T ss_pred CHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCCHH
Confidence 99999999999999877789999999999886 599999999999999999999876543433
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-21 Score=197.89 Aligned_cols=163 Identities=21% Similarity=0.326 Sum_probs=125.0
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCc----------------------HHhhcceEEEcccCccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAP----------------------EAEQEKIGLVSKEPIFLFCDF 142 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~----------------------~~~r~~i~~v~Q~~~~~~~~~ 142 (632)
.+||++++||+++|+||||||||||+++|.|+..+.| ...++.++|++|++.++..++
T Consensus 23 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv 102 (252)
T PRK14255 23 GIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFPFSI 102 (252)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCccCCCcH
Confidence 3899999999999999999999999999987532100 123567999999998776555
Q ss_pred ccccccccCC--CC-CC----HHHHHHHHHHccc--------hhhHhhCCccccccc-----------------ccCCCC
Q 047286 143 NEGQYIPYGK--QN-AS----DEHIRPAVQLANA--------EKSIDKLPLGLDTVV-----------------ATNAVD 190 (632)
Q Consensus 143 ~~~~~i~~~~--~~-~~----~~~~~~~~~~~~l--------~~~i~~l~~g~~~~v-----------------~ts~LD 190 (632)
.+ |+.+.. .. .. .+++.+.++.+++ +....+||.|+.+++ +|++||
T Consensus 103 ~~--nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD 180 (252)
T PRK14255 103 YE--NVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALD 180 (252)
T ss_pred HH--HHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCC
Confidence 54 554321 11 11 2334455555543 234567888988877 399999
Q ss_pred HHHHHHHHHHHHHHhCCceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcCCCc
Q 047286 191 AQSERIVQAAMVKLVTNQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIEDPEG 249 (632)
Q Consensus 191 ~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~~~~ 249 (632)
+.+++.+.+.|+++.++.|+|++||+++.+.. ||+|++|++|++++.|+++++...+..
T Consensus 181 ~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~ 240 (252)
T PRK14255 181 PISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMFLNPKE 240 (252)
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCCCC
Confidence 99999999999998767899999999998864 999999999999999999998765443
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.1e-22 Score=191.08 Aligned_cols=123 Identities=28% Similarity=0.338 Sum_probs=88.6
Q ss_pred ccEEEeeEEEEEecCCCChHHHHHhhhcCCChhh---------------------------------hcH----------
Q 047286 500 GDIVFEHTVALVGENGNGKSTVISLAERFHNPEQ---------------------------------VIY---------- 536 (632)
Q Consensus 500 g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------------------------------~~~---------- 536 (632)
-+|.-++++||||+||||||||.++|.|+.+|++ ++.
T Consensus 28 ~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~E 107 (252)
T COG1124 28 LEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSE 107 (252)
T ss_pred EEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhh
Confidence 3555567999999999999999999999977743 000
Q ss_pred HHHH-------HHHHHHHhc--CCCccCcccccCCCCCChHHHHHHHHHHHHhh--------------------------
Q 047286 537 SWII-------IKCTNFIAS--LPQGSDLNVGERGLQLSGGLKQRIARTRARNY-------------------------- 581 (632)
Q Consensus 537 ~~~~-------~~~~~~i~~--lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~-------------------------- 581 (632)
.+.+ ..+.+.... ||..+ .......||||||||||||||+.-
T Consensus 108 pl~~~~~~~~~~~i~~~L~~VgL~~~~---l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL 184 (252)
T COG1124 108 PLRPHGLSKSQQRIAELLDQVGLPPSF---LDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLL 184 (252)
T ss_pred hhccCCccHHHHHHHHHHHHcCCCHHH---HhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHH
Confidence 0000 011122221 22222 234567899999999999999432
Q ss_pred -----------hccccchhhhhc-CCEEEEEeCCeEeeecChHHHhccCCchhHHH
Q 047286 582 -----------CGCGSPPYHYKN-ADITSVVKNGVIAEKGRHDALMKITDGTYASL 625 (632)
Q Consensus 582 -----------~~iahrl~~~~~-aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l 625 (632)
++|+|.++.+.+ ||||+||++|+|||.++-+++...+.-.|.+.
T Consensus 185 ~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~~~h~ytr~ 240 (252)
T COG1124 185 LELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSHPSHPYTRE 240 (252)
T ss_pred HHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcCCccHHHHH
Confidence 899999999975 99999999999999999999998644455543
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-21 Score=194.49 Aligned_cols=160 Identities=24% Similarity=0.346 Sum_probs=125.0
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCc-------------HHhhcceEEEcccCccccc-cccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAP-------------EAEQEKIGLVSKEPIFLFC-DFNEGQYIPY 150 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~-------------~~~r~~i~~v~Q~~~~~~~-~~~~~~~i~~ 150 (632)
.+||++++|++++|+||||||||||+++|.|+..... ...++.++|++|++.++.. ++.+ |+.+
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e--~l~~ 94 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQ--NIGL 94 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHH--HHhc
Confidence 4999999999999999999999999999986532110 0124579999999876653 5544 5654
Q ss_pred CCC------CCCHHHHHHHHHHccchhh----HhhCCccccccc-----------------ccCCCCHHHHHHHHHHHHH
Q 047286 151 GKQ------NASDEHIRPAVQLANAEKS----IDKLPLGLDTVV-----------------ATNAVDAQSERIVQAAMVK 203 (632)
Q Consensus 151 ~~~------~~~~~~~~~~~~~~~l~~~----i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l~~ 203 (632)
+.. ....+++.++++..++.+. +..||+|..+++ +|++||+.+++.+.+.|++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~ 174 (232)
T PRK10771 95 GLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQ 174 (232)
T ss_pred ccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 311 1123457778888887654 446788888777 3899999999999999998
Q ss_pred HhC--CceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcC
Q 047286 204 LVT--NQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIED 246 (632)
Q Consensus 204 ~~~--~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~ 246 (632)
+.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 175 ~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 175 VCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred HHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 753 7899999999998765 999999999999999999988754
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2e-21 Score=198.00 Aligned_cols=163 Identities=20% Similarity=0.293 Sum_probs=124.9
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCC-----CC-----------------cHHhhcceEEEcccCcccccccc
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRF-----YA-----------------PEAEQEKIGLVSKEPIFLFCDFN 143 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~-----~~-----------------~~~~r~~i~~v~Q~~~~~~~~~~ 143 (632)
+||+|++||+++|+|+||||||||+++|.|+.. .. ....++.++|++|++.+|..++.
T Consensus 43 vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~ 122 (271)
T PRK14238 43 INLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFPKSIY 122 (271)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCccccccHH
Confidence 999999999999999999999999999987632 00 01235679999999987776665
Q ss_pred cccccccCC--CCC-C----HHHHHHHHHHcc--------chhhHhhCCcccccccc-----------------cCCCCH
Q 047286 144 EGQYIPYGK--QNA-S----DEHIRPAVQLAN--------AEKSIDKLPLGLDTVVA-----------------TNAVDA 191 (632)
Q Consensus 144 ~~~~i~~~~--~~~-~----~~~~~~~~~~~~--------l~~~i~~l~~g~~~~v~-----------------ts~LD~ 191 (632)
+ |+.++. ... . .+.+.++++..+ ++.....||+|..++++ |++||+
T Consensus 123 e--ni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~ 200 (271)
T PRK14238 123 D--NVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDP 200 (271)
T ss_pred H--HHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCH
Confidence 5 565431 111 1 122344444432 23345678889888773 999999
Q ss_pred HHHHHHHHHHHHHhCCceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcCCCcH
Q 047286 192 QSERIVQAAMVKLVTNQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIEDPEGA 250 (632)
Q Consensus 192 ~~~~~i~~~l~~~~~~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~~~~~ 250 (632)
.+++.+.+.|+++.++.|+|++||+++.+.. ||++++|++|++++.|+++++...+...
T Consensus 201 ~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~ 260 (271)
T PRK14238 201 ISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIFSNPSDK 260 (271)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHHHcCCCCH
Confidence 9999999999998778899999999998764 9999999999999999999987664443
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.1e-22 Score=194.86 Aligned_cols=152 Identities=24% Similarity=0.350 Sum_probs=117.3
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCc-------------HHhhcceEEEcccCcccc-ccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAP-------------EAEQEKIGLVSKEPIFLF-CDFNEGQYIPY 150 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~-------------~~~r~~i~~v~Q~~~~~~-~~~~~~~~i~~ 150 (632)
.+||++++||+++|+||||||||||+++|.|+..... ...++.++|++|++.++. .++.+ |+.+
T Consensus 18 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~--~l~~ 95 (213)
T cd03259 18 DLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAE--NIAF 95 (213)
T ss_pred ceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHH--HHHh
Confidence 3999999999999999999999999999986532110 113467999999987654 35554 5544
Q ss_pred CCC--C----CCHHHHHHHHHHccchh----hHhhCCccccccc-----------------ccCCCCHHHHHHHHHHHHH
Q 047286 151 GKQ--N----ASDEHIRPAVQLANAEK----SIDKLPLGLDTVV-----------------ATNAVDAQSERIVQAAMVK 203 (632)
Q Consensus 151 ~~~--~----~~~~~~~~~~~~~~l~~----~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l~~ 203 (632)
+.. . ...+++.++++..++.+ .+.+||+|+++++ +|++||+.+++.+.+.|++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~ 175 (213)
T cd03259 96 GLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKE 175 (213)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 311 1 11345667788877754 3567899998877 3999999999999999999
Q ss_pred HhC--CceEEEEecCchHHhh-cCeEEEEeCCeEEEec
Q 047286 204 LVT--NQTVVIVANCLITIRN-ADCIIMVSKGKIVEKG 238 (632)
Q Consensus 204 ~~~--~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g 238 (632)
+.+ ++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 176 ~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 176 LQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 753 7899999999998755 9999999999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2e-21 Score=196.26 Aligned_cols=165 Identities=22% Similarity=0.330 Sum_probs=124.7
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCc----------------------HHhhcceEEEcccCccccc-c
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAP----------------------EAEQEKIGLVSKEPIFLFC-D 141 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~----------------------~~~r~~i~~v~Q~~~~~~~-~ 141 (632)
.+||+|++||+++|+||||||||||+++|.|.....+ ...++.++|++|++.++.. +
T Consensus 22 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 101 (252)
T PRK14272 22 NVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMS 101 (252)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCccCcCCC
Confidence 3999999999999999999999999999987632111 1235679999999876653 5
Q ss_pred cccccccccCC--CC-CCHH----HHHHHHHHccc--------hhhHhhCCcccccccc-----------------cCCC
Q 047286 142 FNEGQYIPYGK--QN-ASDE----HIRPAVQLANA--------EKSIDKLPLGLDTVVA-----------------TNAV 189 (632)
Q Consensus 142 ~~~~~~i~~~~--~~-~~~~----~~~~~~~~~~l--------~~~i~~l~~g~~~~v~-----------------ts~L 189 (632)
+.+ |+.++. .. ...+ ...+.++..++ +..+..||+|..++++ |++|
T Consensus 102 ~~e--nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~L 179 (252)
T PRK14272 102 VFD--NVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSAL 179 (252)
T ss_pred HHH--HHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence 554 554321 11 1222 22333333332 3446778999988773 8999
Q ss_pred CHHHHHHHHHHHHHHhCCceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcCCCcHH
Q 047286 190 DAQSERIVQAAMVKLVTNQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIEDPEGAY 251 (632)
Q Consensus 190 D~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~~~~~~ 251 (632)
|+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++...+...+
T Consensus 180 D~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~ 242 (252)
T PRK14272 180 DPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLFTNPRDER 242 (252)
T ss_pred CHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcCcHH
Confidence 999999999999998777999999999998875 99999999999999999999876644444
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-21 Score=195.16 Aligned_cols=159 Identities=19% Similarity=0.233 Sum_probs=122.7
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC---------------cHH-hhcceEEEcccCccccc-ccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA---------------PEA-EQEKIGLVSKEPIFLFC-DFNEGQY 147 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~---------------~~~-~r~~i~~v~Q~~~~~~~-~~~~~~~ 147 (632)
.+||++++|++++|+||||||||||+++|.|+.... +.. .++.++|++|++.++.. ++.+ |
T Consensus 18 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~--~ 95 (232)
T cd03218 18 GVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEE--N 95 (232)
T ss_pred cceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHHH--H
Confidence 399999999999999999999999999998653211 111 23569999999876654 5554 4
Q ss_pred cccCCC--CCC----HHHHHHHHHHccchh----hHhhCCccccccc-----------------ccCCCCHHHHHHHHHH
Q 047286 148 IPYGKQ--NAS----DEHIRPAVQLANAEK----SIDKLPLGLDTVV-----------------ATNAVDAQSERIVQAA 200 (632)
Q Consensus 148 i~~~~~--~~~----~~~~~~~~~~~~l~~----~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~ 200 (632)
+.+... ... .+++.++++..++.+ .+..||.|+++++ +|++||+.+++.+.+.
T Consensus 96 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~ 175 (232)
T cd03218 96 ILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKI 175 (232)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHH
Confidence 543211 111 234566777777653 4567899998877 3999999999999999
Q ss_pred HHHHh-CCceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhc
Q 047286 201 MVKLV-TNQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIE 245 (632)
Q Consensus 201 l~~~~-~~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~ 245 (632)
|+++. ++.|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 176 l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 176 IKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 99885 47899999999987754 99999999999999999988754
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-21 Score=196.11 Aligned_cols=161 Identities=24% Similarity=0.358 Sum_probs=125.2
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC-----------------cHHhhcceEEEcccCcccc-ccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA-----------------PEAEQEKIGLVSKEPIFLF-CDFNEGQ 146 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~-----------------~~~~r~~i~~v~Q~~~~~~-~~~~~~~ 146 (632)
.+||++++||+++|+||||||||||+++|.|+.... ....++.++|++|++.++. .++.+
T Consensus 19 ~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~-- 96 (240)
T PRK09493 19 NIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALE-- 96 (240)
T ss_pred eeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHHH--
Confidence 399999999999999999999999999998653210 0124567999999987664 35544
Q ss_pred ccccCC---CCC----CHHHHHHHHHHccchh----hHhhCCccccccc-----------------ccCCCCHHHHHHHH
Q 047286 147 YIPYGK---QNA----SDEHIRPAVQLANAEK----SIDKLPLGLDTVV-----------------ATNAVDAQSERIVQ 198 (632)
Q Consensus 147 ~i~~~~---~~~----~~~~~~~~~~~~~l~~----~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~ 198 (632)
|+.++. ... ..+++.++++..++.+ ....||.|..+++ +|++||+.+++.+.
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~ 176 (240)
T PRK09493 97 NVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVL 176 (240)
T ss_pred HHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH
Confidence 554431 111 1234567777777654 4567888988877 39999999999999
Q ss_pred HHHHHHh-CCceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcCC
Q 047286 199 AAMVKLV-TNQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIEDP 247 (632)
Q Consensus 199 ~~l~~~~-~~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~~ 247 (632)
+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++++.+.+
T Consensus 177 ~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 227 (240)
T PRK09493 177 KVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNP 227 (240)
T ss_pred HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcCC
Confidence 9999885 47899999999999865 9999999999999999999886543
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-21 Score=191.89 Aligned_cols=152 Identities=21% Similarity=0.305 Sum_probs=118.2
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCc-------------HHhhcceEEEcccCccccc-cccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAP-------------EAEQEKIGLVSKEPIFLFC-DFNEGQYIPY 150 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~-------------~~~r~~i~~v~Q~~~~~~~-~~~~~~~i~~ 150 (632)
.+||++++||+++|+||||||||||+++|.|+..... ...++.++|++|++.++.. ++.+ |+.+
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e--nl~~ 93 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQ--NVGL 93 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHH--HHhc
Confidence 4999999999999999999999999999986532110 1134679999999986643 4554 5654
Q ss_pred CCC---C---CCHHHHHHHHHHccchhh----HhhCCccccccc-----------------ccCCCCHHHHHHHHHHHHH
Q 047286 151 GKQ---N---ASDEHIRPAVQLANAEKS----IDKLPLGLDTVV-----------------ATNAVDAQSERIVQAAMVK 203 (632)
Q Consensus 151 ~~~---~---~~~~~~~~~~~~~~l~~~----i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l~~ 203 (632)
+.. . ...+++.++++.+++.+. +..||.|+++++ +|++||+.+++.+.+.|++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 173 (211)
T cd03298 94 GLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLD 173 (211)
T ss_pred ccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 321 1 124467778888887644 456888888777 3999999999999999999
Q ss_pred HhC--CceEEEEecCchHHhh-cCeEEEEeCCeEEEec
Q 047286 204 LVT--NQTVVIVANCLITIRN-ADCIIMVSKGKIVEKG 238 (632)
Q Consensus 204 ~~~--~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g 238 (632)
+.+ +.|+|++||+++.+.. ||++++|++|++++.|
T Consensus 174 ~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 174 LHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 853 7899999999998865 9999999999998754
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-21 Score=196.54 Aligned_cols=165 Identities=23% Similarity=0.334 Sum_probs=127.8
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCC--C---C-----------------cHHhhcceEEEcccCccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRF--Y---A-----------------PEAEQEKIGLVSKEPIFLFCDF 142 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~--~---~-----------------~~~~r~~i~~v~Q~~~~~~~~~ 142 (632)
.+||++++||+++|+||||||||||+++|.|+.. . + ....++.++|++|++.+|..+.
T Consensus 21 ~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~t~ 100 (250)
T PRK14266 21 NVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSI 100 (250)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCccCcchH
Confidence 3999999999999999999999999999986521 0 0 1124668999999998887665
Q ss_pred ccccccccCCC--C-CC----HHHHHHHHHHccch--------hhHhhCCcccccccc-----------------cCCCC
Q 047286 143 NEGQYIPYGKQ--N-AS----DEHIRPAVQLANAE--------KSIDKLPLGLDTVVA-----------------TNAVD 190 (632)
Q Consensus 143 ~~~~~i~~~~~--~-~~----~~~~~~~~~~~~l~--------~~i~~l~~g~~~~v~-----------------ts~LD 190 (632)
.+ |+.++.. . .+ .+++.++++.+++. .....||.|..++++ |++||
T Consensus 101 ~~--nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD 178 (250)
T PRK14266 101 FD--NVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALD 178 (250)
T ss_pred HH--HHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCC
Confidence 54 5654311 1 11 23455666666652 335678889888773 89999
Q ss_pred HHHHHHHHHHHHHHhCCceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcCCCcHH
Q 047286 191 AQSERIVQAAMVKLVTNQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIEDPEGAY 251 (632)
Q Consensus 191 ~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~~~~~~ 251 (632)
+.+++.+.+.|+++.++.|+|++||++..+.. ||++++|++|++++.|+++++...+...+
T Consensus 179 ~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~~~~~~~~ 240 (250)
T PRK14266 179 PISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIFINPKDKR 240 (250)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHHhCCCChH
Confidence 99999999999998778899999999998865 99999999999999999999876544433
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-21 Score=197.53 Aligned_cols=161 Identities=22% Similarity=0.318 Sum_probs=124.3
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC----------------------cHHhhcceEEEcccCcccc-cc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA----------------------PEAEQEKIGLVSKEPIFLF-CD 141 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~----------------------~~~~r~~i~~v~Q~~~~~~-~~ 141 (632)
.+||++++||+++|+||||||||||+++|.|+.... +...++.++|++|++.++. .+
T Consensus 22 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 101 (258)
T PRK14241 22 DVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMS 101 (258)
T ss_pred eeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccCCCCc
Confidence 399999999999999999999999999999764210 1124567999999987664 35
Q ss_pred cccccccccCC---CC----CCHHHHHHHHHHccc--------hhhHhhCCcccccccc-----------------cCCC
Q 047286 142 FNEGQYIPYGK---QN----ASDEHIRPAVQLANA--------EKSIDKLPLGLDTVVA-----------------TNAV 189 (632)
Q Consensus 142 ~~~~~~i~~~~---~~----~~~~~~~~~~~~~~l--------~~~i~~l~~g~~~~v~-----------------ts~L 189 (632)
+.+ |+.++. .. ...+++.++++..++ +..+.+||+|..++++ |++|
T Consensus 102 v~~--nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~L 179 (258)
T PRK14241 102 IRD--NVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSAL 179 (258)
T ss_pred HHH--HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccC
Confidence 544 554321 11 112345566666665 2335678999988873 8999
Q ss_pred CHHHHHHHHHHHHHHhCCceEEEEecCchHHh-hcCeEEEEe------CCeEEEecChhHHhcCC
Q 047286 190 DAQSERIVQAAMVKLVTNQTVVIVANCLITIR-NADCIIMVS------KGKIVEKGTHDELIEDP 247 (632)
Q Consensus 190 D~~~~~~i~~~l~~~~~~~tviiitH~~~~~~-~aD~i~vl~------~G~i~~~g~~~el~~~~ 247 (632)
|+.++..+.+.|+++.+++|+|++||+++.+. .||++++|+ +|++++.|+++++...+
T Consensus 180 D~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~~~~~~~~~~~ 244 (258)
T PRK14241 180 DPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDDTEKIFSNP 244 (258)
T ss_pred CHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEecCCHHHHHhCc
Confidence 99999999999999876789999999999875 599999997 89999999999987543
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-21 Score=194.85 Aligned_cols=160 Identities=22% Similarity=0.344 Sum_probs=124.0
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC--------------cHHhhcceEEEcccCcccc-cccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA--------------PEAEQEKIGLVSKEPIFLF-CDFNEGQYIP 149 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~--------------~~~~r~~i~~v~Q~~~~~~-~~~~~~~~i~ 149 (632)
.+||+|++||+++|+||||||||||+++|.|+.... +...++.++|++|++.++. .++.+ |+.
T Consensus 19 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~--~l~ 96 (236)
T TIGR03864 19 DVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQ--NLR 96 (236)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHH--HHH
Confidence 399999999999999999999999999998653211 1122357999999987543 35544 554
Q ss_pred cCCC--CC----CHHHHHHHHHHccch----hhHhhCCccccccc-----------------ccCCCCHHHHHHHHHHHH
Q 047286 150 YGKQ--NA----SDEHIRPAVQLANAE----KSIDKLPLGLDTVV-----------------ATNAVDAQSERIVQAAMV 202 (632)
Q Consensus 150 ~~~~--~~----~~~~~~~~~~~~~l~----~~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l~ 202 (632)
+... .. ..+++.++++..++. ..+..||+|..+++ +|++||+.+++.+.+.|+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~ 176 (236)
T TIGR03864 97 YHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVR 176 (236)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHH
Confidence 3211 11 123456677777664 44678999998887 399999999999999999
Q ss_pred HHh--CCceEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHhcC
Q 047286 203 KLV--TNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIED 246 (632)
Q Consensus 203 ~~~--~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~~ 246 (632)
++. ++.|+|++||+++.+..||++++|++|++++.|+++++...
T Consensus 177 ~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 177 ALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred HHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 985 37899999999998878999999999999999999888653
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-21 Score=200.67 Aligned_cols=160 Identities=21% Similarity=0.301 Sum_probs=124.5
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC-------------------cHHhhcceEEEcccC--cccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA-------------------PEAEQEKIGLVSKEP--IFLFCDFN 143 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~-------------------~~~~r~~i~~v~Q~~--~~~~~~~~ 143 (632)
.+||++++||+++|+||||||||||+++|+|+.... ....++.++|++|++ .++..++.
T Consensus 25 ~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~ 104 (287)
T PRK13641 25 NISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVL 104 (287)
T ss_pred eeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhccchHH
Confidence 499999999999999999999999999998653210 122456799999997 34444554
Q ss_pred cccccccCCC--CCC----HHHHHHHHHHccch-h----hHhhCCcccccccc-----------------cCCCCHHHHH
Q 047286 144 EGQYIPYGKQ--NAS----DEHIRPAVQLANAE-K----SIDKLPLGLDTVVA-----------------TNAVDAQSER 195 (632)
Q Consensus 144 ~~~~i~~~~~--~~~----~~~~~~~~~~~~l~-~----~i~~l~~g~~~~v~-----------------ts~LD~~~~~ 195 (632)
+ |+.++.. ... .+++.++++.+++. + .+..||.|++++++ |++||+.+++
T Consensus 105 e--~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~ 182 (287)
T PRK13641 105 K--DVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRK 182 (287)
T ss_pred H--HHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHH
Confidence 4 5654321 111 23466777888774 3 35678899988873 9999999999
Q ss_pred HHHHHHHHHh-CCceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhcC
Q 047286 196 IVQAAMVKLV-TNQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIED 246 (632)
Q Consensus 196 ~i~~~l~~~~-~~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~~ 246 (632)
.+.+.|+++. ++.|+|++||+++.+. .||++++|++|++++.|+++++...
T Consensus 183 ~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 235 (287)
T PRK13641 183 EMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFSD 235 (287)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999985 4789999999999876 5999999999999999999988643
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.9e-21 Score=197.16 Aligned_cols=163 Identities=24% Similarity=0.327 Sum_probs=126.1
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC-c---------------------HHhhcceEEEcccCccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA-P---------------------EAEQEKIGLVSKEPIFLFCDF 142 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~-~---------------------~~~r~~i~~v~Q~~~~~~~~~ 142 (632)
.+||++++||+++|+|+||||||||+++|.|+...+ | ..++..++|++|++.+|..++
T Consensus 25 ~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv 104 (259)
T PRK14260 25 GISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSI 104 (259)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccccCCccH
Confidence 399999999999999999999999999998753210 0 124567999999998777665
Q ss_pred ccccccccCCC---CCC----HHHHHHHHHHccch--------hhHhhCCccccccc-----------------ccCCCC
Q 047286 143 NEGQYIPYGKQ---NAS----DEHIRPAVQLANAE--------KSIDKLPLGLDTVV-----------------ATNAVD 190 (632)
Q Consensus 143 ~~~~~i~~~~~---~~~----~~~~~~~~~~~~l~--------~~i~~l~~g~~~~v-----------------~ts~LD 190 (632)
.+ |+.++.. ... .+.+.++++.+++. .....||.|..+++ +|++||
T Consensus 105 ~e--nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD 182 (259)
T PRK14260 105 YE--NVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALD 182 (259)
T ss_pred HH--HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCC
Confidence 55 5654311 011 23455666766652 33467888988777 399999
Q ss_pred HHHHHHHHHHHHHHhCCceEEEEecCchHHhh-cCeEEEEe-----CCeEEEecChhHHhcCCCc
Q 047286 191 AQSERIVQAAMVKLVTNQTVVIVANCLITIRN-ADCIIMVS-----KGKIVEKGTHDELIEDPEG 249 (632)
Q Consensus 191 ~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~-aD~i~vl~-----~G~i~~~g~~~el~~~~~~ 249 (632)
+.++..+.+.|+++.+++|+|++||+++.+.. ||++++|+ +|++++.|+++++.+.+..
T Consensus 183 ~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~~~~~~ 247 (259)
T PRK14260 183 PIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVTTQIFSNPLD 247 (259)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeCCHHHHhcCCCC
Confidence 99999999999998777899999999998865 99999998 5999999999998765433
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-21 Score=181.38 Aligned_cols=160 Identities=18% Similarity=0.321 Sum_probs=125.1
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCC---------------CCcHHhhcceEEEcccCcc-ccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRF---------------YAPEAEQEKIGLVSKEPIF-LFCDFNEGQYI 148 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~---------------~~~~~~r~~i~~v~Q~~~~-~~~~~~~~~~i 148 (632)
.++|++++||+++|+||||||||||+|.|+|... +.+.++.++-+++||+..+ |.-+..+ .+
T Consensus 19 ~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~e--VV 96 (259)
T COG4559 19 GVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQE--VV 96 (259)
T ss_pred CcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHHH--HH
Confidence 3999999999999999999999999999986432 2344456778999998764 3333333 45
Q ss_pred ccCCC------CCCHHH--HHHHHHHccch----hhHhhCCccccccc-----------------------ccCCCCHHH
Q 047286 149 PYGKQ------NASDEH--IRPAVQLANAE----KSIDKLPLGLDTVV-----------------------ATNAVDAQS 193 (632)
Q Consensus 149 ~~~~~------~~~~~~--~~~~~~~~~l~----~~i~~l~~g~~~~v-----------------------~ts~LD~~~ 193 (632)
.+|.. +..+++ .++++..+++. .+...|++|.+++| +||+||...
T Consensus 97 ~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~H 176 (259)
T COG4559 97 QMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAH 176 (259)
T ss_pred HhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHH
Confidence 55531 111222 45666666543 56788999998887 399999999
Q ss_pred HHHHHHHHHHHh-CCceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhcC
Q 047286 194 ERIVQAAMVKLV-TNQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIED 246 (632)
Q Consensus 194 ~~~i~~~l~~~~-~~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~~ 246 (632)
+..+++..+++. ++..|+.|-||++... +||||++|++|++++.|++++.+..
T Consensus 177 Q~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vlt~ 231 (259)
T COG4559 177 QHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLTD 231 (259)
T ss_pred HHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHhcCH
Confidence 999999999995 5789999999999875 5999999999999999999998764
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-21 Score=199.91 Aligned_cols=160 Identities=23% Similarity=0.307 Sum_probs=125.0
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC---------------CcHHhhcceEEEcccCc--ccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY---------------APEAEQEKIGLVSKEPI--FLFCDFNEGQY 147 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~---------------~~~~~r~~i~~v~Q~~~--~~~~~~~~~~~ 147 (632)
.+||++++||+++|+||||||||||+++|+|+... .+...++.++|++|++. ++..++.+ |
T Consensus 22 ~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~--~ 99 (277)
T PRK13652 22 NINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQ--D 99 (277)
T ss_pred EeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHHH--H
Confidence 39999999999999999999999999999865221 11234567999999973 44455554 5
Q ss_pred cccCCC--CCC----HHHHHHHHHHccchh----hHhhCCccccccc-----------------ccCCCCHHHHHHHHHH
Q 047286 148 IPYGKQ--NAS----DEHIRPAVQLANAEK----SIDKLPLGLDTVV-----------------ATNAVDAQSERIVQAA 200 (632)
Q Consensus 148 i~~~~~--~~~----~~~~~~~~~~~~l~~----~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~ 200 (632)
+.++.. ..+ .+++.++++.+++.+ .+..||+|+.+++ +|++||+.+++.+.+.
T Consensus 100 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~ 179 (277)
T PRK13652 100 IAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDF 179 (277)
T ss_pred HHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 554321 122 234677788877654 3567888888777 3999999999999999
Q ss_pred HHHHhC--CceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhcC
Q 047286 201 MVKLVT--NQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIED 246 (632)
Q Consensus 201 l~~~~~--~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~~ 246 (632)
++++.+ +.|+|++||+++.+. .||++++|++|++++.|+++++...
T Consensus 180 l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 180 LNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred HHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 998854 789999999999885 5999999999999999999998754
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-21 Score=200.59 Aligned_cols=160 Identities=22% Similarity=0.336 Sum_probs=125.3
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC----------------cHHhhcceEEEcccCc--cccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA----------------PEAEQEKIGLVSKEPI--FLFCDFNEGQ 146 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~----------------~~~~r~~i~~v~Q~~~--~~~~~~~~~~ 146 (632)
.+||+|++||+++|+||||||||||+++|.|+.... +...++.++|++|+|. ++..++.+
T Consensus 28 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~-- 105 (280)
T PRK13633 28 DVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEE-- 105 (280)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhccccHHH--
Confidence 399999999999999999999999999998653211 1234678999999984 33333433
Q ss_pred ccccCCC--CCC----HHHHHHHHHHccchhh----HhhCCccccccc-----------------ccCCCCHHHHHHHHH
Q 047286 147 YIPYGKQ--NAS----DEHIRPAVQLANAEKS----IDKLPLGLDTVV-----------------ATNAVDAQSERIVQA 199 (632)
Q Consensus 147 ~i~~~~~--~~~----~~~~~~~~~~~~l~~~----i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~ 199 (632)
|+.++.. ... .+++.++++.+++.+. +..||+|+.+++ +|++||+.++..+.+
T Consensus 106 ~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~ 185 (280)
T PRK13633 106 DVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVN 185 (280)
T ss_pred HHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 5655421 112 3456777888887654 456778888777 399999999999999
Q ss_pred HHHHHhC--CceEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHhcC
Q 047286 200 AMVKLVT--NQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIED 246 (632)
Q Consensus 200 ~l~~~~~--~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~~ 246 (632)
.|+++.+ +.|+|++||+++.+..||++++|++|++++.|+++++...
T Consensus 186 ~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 234 (280)
T PRK13633 186 TIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIFKE 234 (280)
T ss_pred HHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 9999853 7899999999999878999999999999999999998654
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.1e-22 Score=195.39 Aligned_cols=155 Identities=23% Similarity=0.314 Sum_probs=119.5
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCc----------HHhhcceEEEcccCcccc-cccccccccccCCC
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAP----------EAEQEKIGLVSKEPIFLF-CDFNEGQYIPYGKQ 153 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~----------~~~r~~i~~v~Q~~~~~~-~~~~~~~~i~~~~~ 153 (632)
.+||+|++|++++|+||||||||||+++|.|+..... ...++.++|++|++.++. .++.+ |+.++..
T Consensus 22 ~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e--~l~~~~~ 99 (220)
T cd03293 22 DISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLD--NVALGLE 99 (220)
T ss_pred ceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEecccccccCCCHHH--HHHHHHH
Confidence 3999999999999999999999999999986532211 123567999999987654 35544 5544311
Q ss_pred --CC----CHHHHHHHHHHccchhh----HhhCCccccccc-----------------ccCCCCHHHHHHHHHHHHHHh-
Q 047286 154 --NA----SDEHIRPAVQLANAEKS----IDKLPLGLDTVV-----------------ATNAVDAQSERIVQAAMVKLV- 205 (632)
Q Consensus 154 --~~----~~~~~~~~~~~~~l~~~----i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l~~~~- 205 (632)
.. ..+++.++++..++.+. ...||+|+.+++ +|++||+.+++.+.+.|+++.
T Consensus 100 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~ 179 (220)
T cd03293 100 LQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWR 179 (220)
T ss_pred HcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH
Confidence 11 23456777888777543 457888988877 399999999999999999874
Q ss_pred C-CceEEEEecCchHHh-hcCeEEEEe--CCeEEEecChh
Q 047286 206 T-NQTVVIVANCLITIR-NADCIIMVS--KGKIVEKGTHD 241 (632)
Q Consensus 206 ~-~~tviiitH~~~~~~-~aD~i~vl~--~G~i~~~g~~~ 241 (632)
+ ++|+|++||+++.+. .||++++|+ +|++++.++.+
T Consensus 180 ~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 180 ETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred HcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEec
Confidence 3 789999999999775 599999999 79999987653
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.8e-21 Score=198.14 Aligned_cols=160 Identities=24% Similarity=0.381 Sum_probs=125.3
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC----------------------CcHHhhcceEEEcccCcccccccc
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY----------------------APEAEQEKIGLVSKEPIFLFCDFN 143 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~----------------------~~~~~r~~i~~v~Q~~~~~~~~~~ 143 (632)
+||+|++||+++|+||||||||||+++|.|+..+ ++...++.++|++|++.+|..++.
T Consensus 58 is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~ 137 (285)
T PRK14254 58 VSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPKSIY 137 (285)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCcCCHH
Confidence 9999999999999999999999999999876321 011245679999999987765555
Q ss_pred cccccccCC-----CCCCHHHHHHHHHHccc--------hhhHhhCCcccccccc-----------------cCCCCHHH
Q 047286 144 EGQYIPYGK-----QNASDEHIRPAVQLANA--------EKSIDKLPLGLDTVVA-----------------TNAVDAQS 193 (632)
Q Consensus 144 ~~~~i~~~~-----~~~~~~~~~~~~~~~~l--------~~~i~~l~~g~~~~v~-----------------ts~LD~~~ 193 (632)
+ |+.+.. .....+++.++++..++ +.....||+|++++++ |++||+.+
T Consensus 138 e--nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~ 215 (285)
T PRK14254 138 D--NVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVA 215 (285)
T ss_pred H--HHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHH
Confidence 4 554321 11123456777777765 2345689999988873 99999999
Q ss_pred HHHHHHHHHHHhCCceEEEEecCchHHhh-cCeEE-EEeCCeEEEecChhHHhcCC
Q 047286 194 ERIVQAAMVKLVTNQTVVIVANCLITIRN-ADCII-MVSKGKIVEKGTHDELIEDP 247 (632)
Q Consensus 194 ~~~i~~~l~~~~~~~tviiitH~~~~~~~-aD~i~-vl~~G~i~~~g~~~el~~~~ 247 (632)
++.+.+.|+++.++.|+|++||+++.+.. |||++ +|++|++++.|+++++...+
T Consensus 216 ~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~~~~~ 271 (285)
T PRK14254 216 TSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIFENP 271 (285)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHHHhCc
Confidence 99999999998767899999999998865 99975 57999999999999886543
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.4e-21 Score=189.93 Aligned_cols=152 Identities=22% Similarity=0.358 Sum_probs=119.6
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC----------c---HHhhcceEEEcccCcccc-ccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA----------P---EAEQEKIGLVSKEPIFLF-CDFNEGQYIPY 150 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~----------~---~~~r~~i~~v~Q~~~~~~-~~~~~~~~i~~ 150 (632)
.+||++++|++++|+||||||||||+++|.|+.... . ...++.++|++|++.++. .++.+ |+.+
T Consensus 18 ~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e--~l~~ 95 (208)
T cd03268 18 DISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARE--NLRL 95 (208)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHH--HHHH
Confidence 399999999999999999999999999998653211 0 124567999999987653 35554 5543
Q ss_pred CC--CCCCHHHHHHHHHHccch----hhHhhCCccccccc-----------------ccCCCCHHHHHHHHHHHHHHh-C
Q 047286 151 GK--QNASDEHIRPAVQLANAE----KSIDKLPLGLDTVV-----------------ATNAVDAQSERIVQAAMVKLV-T 206 (632)
Q Consensus 151 ~~--~~~~~~~~~~~~~~~~l~----~~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l~~~~-~ 206 (632)
.. .....+++.++++..++. ....+||+|.++++ +|++||+.+++.+.+.|+++. +
T Consensus 96 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 175 (208)
T cd03268 96 LARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQ 175 (208)
T ss_pred HHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHC
Confidence 21 122456677888888764 34667999998887 399999999999999999876 4
Q ss_pred CceEEEEecCchHHhh-cCeEEEEeCCeEEEec
Q 047286 207 NQTVVIVANCLITIRN-ADCIIMVSKGKIVEKG 238 (632)
Q Consensus 207 ~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g 238 (632)
++|+|++||++..+.. ||++++|++|++++.|
T Consensus 176 ~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 176 GITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 7899999999998865 9999999999998764
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.9e-21 Score=192.23 Aligned_cols=161 Identities=28% Similarity=0.405 Sum_probs=125.4
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCc-------------HHhhcceEEEcccCccccc-cccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAP-------------EAEQEKIGLVSKEPIFLFC-DFNEGQYIPY 150 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~-------------~~~r~~i~~v~Q~~~~~~~-~~~~~~~i~~ 150 (632)
.+||++.+||+++|+||||||||||+++|.|...... ...++.++|++|++.+|.. ++.+ |+.+
T Consensus 18 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e--nl~~ 95 (237)
T TIGR00968 18 DVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRD--NIAF 95 (237)
T ss_pred eEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHH--HHHh
Confidence 3999999999999999999999999999986532110 1235679999999986653 5555 5544
Q ss_pred CCC--CC----CHHHHHHHHHHccchh----hHhhCCccccccc-----------------ccCCCCHHHHHHHHHHHHH
Q 047286 151 GKQ--NA----SDEHIRPAVQLANAEK----SIDKLPLGLDTVV-----------------ATNAVDAQSERIVQAAMVK 203 (632)
Q Consensus 151 ~~~--~~----~~~~~~~~~~~~~l~~----~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l~~ 203 (632)
... .. ..+++.++++..++.+ ....+|.|+.+++ +|++||+.+++.+.+.|++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~ 175 (237)
T TIGR00968 96 GLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRK 175 (237)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 321 11 1345567777777643 3456888988777 3899999999999999998
Q ss_pred HhC--CceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcCC
Q 047286 204 LVT--NQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIEDP 247 (632)
Q Consensus 204 ~~~--~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~~ 247 (632)
+.+ ++|+|++||++..+.. ||++++|++|++++.|+++++.+.+
T Consensus 176 ~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~~ 222 (237)
T TIGR00968 176 LHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDHP 222 (237)
T ss_pred HHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcCC
Confidence 754 6899999999998765 9999999999999999999987543
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-20 Score=191.40 Aligned_cols=158 Identities=21% Similarity=0.284 Sum_probs=120.0
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHH--hhcceEEEcccCcccccccccccccccCCCCCCHHHHHHH
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEA--EQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRPA 163 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~--~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 163 (632)
+||+|++||+++|+||||||||||+++|.|........ +...++|++|++.++..++.+ |+.++.. ....++.+.
T Consensus 56 vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~~~l~~~tv~e--nl~~~~~-~~~~~~~~~ 132 (282)
T cd03291 56 INLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMPGTIKE--NIIFGVS-YDEYRYKSV 132 (282)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCcccccccCHHH--Hhhcccc-cCHHHHHHH
Confidence 89999999999999999999999999999653222111 234599999999877766655 5655432 123344555
Q ss_pred HHHccchhhH---------------hhCCccccccc-----------------ccCCCCHHHHHHHHHHH-HHHhCCceE
Q 047286 164 VQLANAEKSI---------------DKLPLGLDTVV-----------------ATNAVDAQSERIVQAAM-VKLVTNQTV 210 (632)
Q Consensus 164 ~~~~~l~~~i---------------~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l-~~~~~~~tv 210 (632)
++.+++.+.+ ..||.|..+++ +|++||+.+++.+.+.+ ..+.++.|+
T Consensus 133 l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tI 212 (282)
T cd03291 133 VKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTR 212 (282)
T ss_pred HHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEE
Confidence 5555555443 35666666655 38999999999998754 566667899
Q ss_pred EEEecCchHHhhcCeEEEEeCCeEEEecChhHHhcC
Q 047286 211 VIVANCLITIRNADCIIMVSKGKIVEKGTHDELIED 246 (632)
Q Consensus 211 iiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~~ 246 (632)
|++||++..+..||++++|++|++++.|+++++...
T Consensus 213 iiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 248 (282)
T cd03291 213 ILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSL 248 (282)
T ss_pred EEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 999999998888999999999999999999998754
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-21 Score=199.13 Aligned_cols=160 Identities=23% Similarity=0.329 Sum_probs=124.8
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC-----------------cHHhhcceEEEcccCc--ccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA-----------------PEAEQEKIGLVSKEPI--FLFCDFNEG 145 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~-----------------~~~~r~~i~~v~Q~~~--~~~~~~~~~ 145 (632)
.+||+|++||+++|+||||||||||+++|+|+.... ...+++.++|++|++. ++..++.+
T Consensus 20 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e- 98 (275)
T PRK13639 20 GINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEE- 98 (275)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhhccccHHH-
Confidence 399999999999999999999999999998652110 1124678999999973 44445544
Q ss_pred cccccCCC--CCC----HHHHHHHHHHccchh----hHhhCCccccccc-----------------ccCCCCHHHHHHHH
Q 047286 146 QYIPYGKQ--NAS----DEHIRPAVQLANAEK----SIDKLPLGLDTVV-----------------ATNAVDAQSERIVQ 198 (632)
Q Consensus 146 ~~i~~~~~--~~~----~~~~~~~~~~~~l~~----~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~ 198 (632)
|+.++.. ... .+++.++++.+++.+ ....||.|+.+++ +|++||+.+++.+.
T Consensus 99 -~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~ 177 (275)
T PRK13639 99 -DVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIM 177 (275)
T ss_pred -HHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHH
Confidence 5654321 111 245667777777643 4577888988777 39999999999999
Q ss_pred HHHHHHhC-CceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhcC
Q 047286 199 AAMVKLVT-NQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIED 246 (632)
Q Consensus 199 ~~l~~~~~-~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~~ 246 (632)
+.|.++.+ +.|+|++||+++.+. .||++++|++|++++.|+++++...
T Consensus 178 ~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 178 KLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred HHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999854 789999999999886 5999999999999999999998653
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-21 Score=198.52 Aligned_cols=160 Identities=20% Similarity=0.321 Sum_probs=122.9
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC-----------------cHHhhcceEEEcccCc--ccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA-----------------PEAEQEKIGLVSKEPI--FLFCDFNEG 145 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~-----------------~~~~r~~i~~v~Q~~~--~~~~~~~~~ 145 (632)
.+||++++|++++|+||||||||||+++|.|+.... ....++.++|++|++. ++..++.+
T Consensus 19 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~- 97 (271)
T PRK13638 19 GLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDS- 97 (271)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhccccccHHH-
Confidence 399999999999999999999999999998653210 1234567999999975 23334443
Q ss_pred cccccCC--CCCC----HHHHHHHHHHccchh----hHhhCCccccccc-----------------ccCCCCHHHHHHHH
Q 047286 146 QYIPYGK--QNAS----DEHIRPAVQLANAEK----SIDKLPLGLDTVV-----------------ATNAVDAQSERIVQ 198 (632)
Q Consensus 146 ~~i~~~~--~~~~----~~~~~~~~~~~~l~~----~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~ 198 (632)
|+.++. .... .+++.++++..++.+ .+..||+|+++++ +|++||+.+++.+.
T Consensus 98 -~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~ 176 (271)
T PRK13638 98 -DIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMI 176 (271)
T ss_pred -HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence 444321 1111 234556777777643 4567899998887 39999999999999
Q ss_pred HHHHHHh-CCceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcC
Q 047286 199 AAMVKLV-TNQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIED 246 (632)
Q Consensus 199 ~~l~~~~-~~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~ 246 (632)
+.|+++. ++.|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 177 ~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 177 AIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999985 47899999999998854 999999999999999999988654
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.9e-21 Score=195.27 Aligned_cols=168 Identities=18% Similarity=0.327 Sum_probs=129.2
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC---------------------cHHhhcceEEEcccCccccc-cc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA---------------------PEAEQEKIGLVSKEPIFLFC-DF 142 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~---------------------~~~~r~~i~~v~Q~~~~~~~-~~ 142 (632)
.+||++++||+++|+||||||||||+++|.|..... +...++.++|++|++.++.. ++
T Consensus 28 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 107 (257)
T PRK14246 28 DITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSI 107 (257)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCccCCCCcH
Confidence 399999999999999999999999999998653211 11246789999999987653 65
Q ss_pred ccccccccCCC--CC-CH----HHHHHHHHHccch--------hhHhhCCccccccc-----------------ccCCCC
Q 047286 143 NEGQYIPYGKQ--NA-SD----EHIRPAVQLANAE--------KSIDKLPLGLDTVV-----------------ATNAVD 190 (632)
Q Consensus 143 ~~~~~i~~~~~--~~-~~----~~~~~~~~~~~l~--------~~i~~l~~g~~~~v-----------------~ts~LD 190 (632)
.+ |+.++.. .. .. +++.++++..++. .....+|.|..+++ +|++||
T Consensus 108 ~~--nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD 185 (257)
T PRK14246 108 YD--NIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMID 185 (257)
T ss_pred HH--HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCC
Confidence 55 5554311 11 11 3345666776663 23456788887776 399999
Q ss_pred HHHHHHHHHHHHHHhCCceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhcCCCcHHHHH
Q 047286 191 AQSERIVQAAMVKLVTNQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIEDPEGAYSQL 254 (632)
Q Consensus 191 ~~~~~~i~~~l~~~~~~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~~~~~~~~~~ 254 (632)
+.+++.+.+.|.++.++.|+|++||+...+. .||++++|++|++++.|+++++.+.+...|.+.
T Consensus 186 ~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~~~~~~~~~~~~ 250 (257)
T PRK14246 186 IVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSPKNELTEK 250 (257)
T ss_pred HHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCcHHHHH
Confidence 9999999999999877799999999999885 599999999999999999999987655555443
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=99.86 E-value=2e-21 Score=193.48 Aligned_cols=157 Identities=18% Similarity=0.272 Sum_probs=120.8
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC---------------CcHH-hhcceEEEcccCccccc-ccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY---------------APEA-EQEKIGLVSKEPIFLFC-DFNEGQY 147 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~---------------~~~~-~r~~i~~v~Q~~~~~~~-~~~~~~~ 147 (632)
.+||++++||+++|+||||||||||+++|.|+... ++.. .++.++|++|++.+|.. ++.+ |
T Consensus 18 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~--~ 95 (230)
T TIGR03410 18 GVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEE--N 95 (230)
T ss_pred ceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHHH--H
Confidence 39999999999999999999999999999865321 1111 24679999999986653 5544 5
Q ss_pred cccCCC--CCC-HHHHHHHHHHcc-----chhhHhhCCccccccc-----------------ccCCCCHHHHHHHHHHHH
Q 047286 148 IPYGKQ--NAS-DEHIRPAVQLAN-----AEKSIDKLPLGLDTVV-----------------ATNAVDAQSERIVQAAMV 202 (632)
Q Consensus 148 i~~~~~--~~~-~~~~~~~~~~~~-----l~~~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l~ 202 (632)
+.++.. ... .+...++++..+ .+..+..||+|..+++ +|++||+.+++.+.+.|.
T Consensus 96 l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~ 175 (230)
T TIGR03410 96 LLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIR 175 (230)
T ss_pred HHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHH
Confidence 544311 111 223345555443 2455778999998877 399999999999999999
Q ss_pred HHhC--CceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHH
Q 047286 203 KLVT--NQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDEL 243 (632)
Q Consensus 203 ~~~~--~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el 243 (632)
++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 176 ~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 176 RLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred HHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 9864 6899999999998875 999999999999999999887
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.5e-21 Score=199.27 Aligned_cols=160 Identities=21% Similarity=0.327 Sum_probs=123.0
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC--------------------CcHHhhcceEEEcccCc--cccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY--------------------APEAEQEKIGLVSKEPI--FLFCDF 142 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~--------------------~~~~~r~~i~~v~Q~~~--~~~~~~ 142 (632)
.+||++++||+++|+||||||||||+++|+|+... ....+++.++|++|++. ++..++
T Consensus 29 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv 108 (289)
T PRK13645 29 NTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETI 108 (289)
T ss_pred eeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhhhhHH
Confidence 39999999999999999999999999999865311 01234667999999973 344455
Q ss_pred ccccccccCCC--CCCH----HHHHHHHHHccch-----hhHhhCCcccccccc-----------------cCCCCHHHH
Q 047286 143 NEGQYIPYGKQ--NASD----EHIRPAVQLANAE-----KSIDKLPLGLDTVVA-----------------TNAVDAQSE 194 (632)
Q Consensus 143 ~~~~~i~~~~~--~~~~----~~~~~~~~~~~l~-----~~i~~l~~g~~~~v~-----------------ts~LD~~~~ 194 (632)
.+ |+.++.. .... +++.++++..++. ..+..||+|+.++++ |++||+.++
T Consensus 109 ~e--nl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~ 186 (289)
T PRK13645 109 EK--DIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGE 186 (289)
T ss_pred HH--HHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHH
Confidence 44 5554321 1122 3345666766662 346779999988873 999999999
Q ss_pred HHHHHHHHHHhC--CceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhcC
Q 047286 195 RIVQAAMVKLVT--NQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIED 246 (632)
Q Consensus 195 ~~i~~~l~~~~~--~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~~ 246 (632)
+.+.+.|+++.+ ++|+|++||+++.+. .||++++|++|++++.|+++++...
T Consensus 187 ~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 241 (289)
T PRK13645 187 EDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFSN 241 (289)
T ss_pred HHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999998853 789999999999875 5999999999999999999888653
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.3e-21 Score=197.15 Aligned_cols=158 Identities=23% Similarity=0.338 Sum_probs=123.2
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC---------------CcHHhhcceEEEcccCccccc-ccccccccc
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY---------------APEAEQEKIGLVSKEPIFLFC-DFNEGQYIP 149 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~---------------~~~~~r~~i~~v~Q~~~~~~~-~~~~~~~i~ 149 (632)
+||++++|++++|+||||||||||+++|.|+... .+...++.++|++|++.+++. ++.+ |+.
T Consensus 30 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e--~l~ 107 (265)
T PRK10575 30 LSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRE--LVA 107 (265)
T ss_pred eeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHH--HHH
Confidence 9999999999999999999999999999865321 112345679999999765443 4443 555
Q ss_pred cCCC----------CCCHHHHHHHHHHccchhh----HhhCCccccccc-----------------ccCCCCHHHHHHHH
Q 047286 150 YGKQ----------NASDEHIRPAVQLANAEKS----IDKLPLGLDTVV-----------------ATNAVDAQSERIVQ 198 (632)
Q Consensus 150 ~~~~----------~~~~~~~~~~~~~~~l~~~----i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~ 198 (632)
++.. ....+++.++++.+++.+. +.+||+|..+++ +|++||+.+++.+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~ 187 (265)
T PRK10575 108 IGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVL 187 (265)
T ss_pred hCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH
Confidence 4311 1123456778888877554 456888888777 39999999999999
Q ss_pred HHHHHHhC--CceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhc
Q 047286 199 AAMVKLVT--NQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIE 245 (632)
Q Consensus 199 ~~l~~~~~--~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~ 245 (632)
+.|.++.+ +.|+|++||+++.+. .||++++|++|++++.|+.+++..
T Consensus 188 ~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~ 237 (265)
T PRK10575 188 ALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR 237 (265)
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhcC
Confidence 99999853 789999999999886 599999999999999999988753
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-21 Score=193.18 Aligned_cols=148 Identities=20% Similarity=0.297 Sum_probs=115.3
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC---------------cH---HhhcceEEEcccCcccc-cccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA---------------PE---AEQEKIGLVSKEPIFLF-CDFNEG 145 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~---------------~~---~~r~~i~~v~Q~~~~~~-~~~~~~ 145 (632)
.+||++++||+++|+||||||||||+++|.|+.... +. ..++.++|++|++.++. .++.+
T Consensus 21 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e- 99 (216)
T TIGR00960 21 NLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYD- 99 (216)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccHHH-
Confidence 399999999999999999999999999998653210 01 14568999999987665 35554
Q ss_pred cccccCC-----C-CCCHHHHHHHHHHccchh----hHhhCCccccccc-----------------ccCCCCHHHHHHHH
Q 047286 146 QYIPYGK-----Q-NASDEHIRPAVQLANAEK----SIDKLPLGLDTVV-----------------ATNAVDAQSERIVQ 198 (632)
Q Consensus 146 ~~i~~~~-----~-~~~~~~~~~~~~~~~l~~----~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~ 198 (632)
|+.++. . ....+++.++++.+++.+ ...+||+|+.+++ +|++||+.+++.+.
T Consensus 100 -~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~ 178 (216)
T TIGR00960 100 -NVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIM 178 (216)
T ss_pred -HHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHH
Confidence 555431 1 112345677888887754 4567888998887 39999999999999
Q ss_pred HHHHHHh-CCceEEEEecCchHHhh-cCeEEEEeCCeE
Q 047286 199 AAMVKLV-TNQTVVIVANCLITIRN-ADCIIMVSKGKI 234 (632)
Q Consensus 199 ~~l~~~~-~~~tviiitH~~~~~~~-aD~i~vl~~G~i 234 (632)
+.|+++. ++.|+|++||+++.+.. ||++++|++|++
T Consensus 179 ~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 179 RLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999885 47899999999998865 999999999975
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.9e-21 Score=195.36 Aligned_cols=159 Identities=19% Similarity=0.341 Sum_probs=123.3
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC---------------cHHhhcceEEEcccCccccc-cccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA---------------PEAEQEKIGLVSKEPIFLFC-DFNEGQYI 148 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~---------------~~~~r~~i~~v~Q~~~~~~~-~~~~~~~i 148 (632)
.+||++++|++++|+||||||||||+++|.|+.... +...++.++|++|++.++.. ++.+ |+
T Consensus 20 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~--~i 97 (255)
T PRK11231 20 DLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRE--LV 97 (255)
T ss_pred eeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccHHH--HH
Confidence 399999999999999999999999999998652211 11235679999999875543 4444 55
Q ss_pred ccCCC----------CCCHHHHHHHHHHccchh----hHhhCCccccccc-----------------ccCCCCHHHHHHH
Q 047286 149 PYGKQ----------NASDEHIRPAVQLANAEK----SIDKLPLGLDTVV-----------------ATNAVDAQSERIV 197 (632)
Q Consensus 149 ~~~~~----------~~~~~~~~~~~~~~~l~~----~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i 197 (632)
.++.. ....+++.++++..++.+ ....||+|..+++ +|++||+.+++.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l 177 (255)
T PRK11231 98 AYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVEL 177 (255)
T ss_pred HhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 54311 112345667777777654 4567888988877 3999999999999
Q ss_pred HHHHHHHh-CCceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhc
Q 047286 198 QAAMVKLV-TNQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIE 245 (632)
Q Consensus 198 ~~~l~~~~-~~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~ 245 (632)
.+.|+++. ++.|+|++||+++.+. .||++++|++|+++..|+++++..
T Consensus 178 ~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 178 MRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred HHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 99999875 4789999999999876 499999999999999999988753
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.1e-21 Score=197.36 Aligned_cols=160 Identities=21% Similarity=0.320 Sum_probs=125.4
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC---------------CcHHhhcceEEEcccCc--ccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY---------------APEAEQEKIGLVSKEPI--FLFCDFNEGQY 147 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~---------------~~~~~r~~i~~v~Q~~~--~~~~~~~~~~~ 147 (632)
.+||++++||+++|+|+||||||||+++|.|+... .....++.++|++|++. ++..++.+ |
T Consensus 25 ~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e--n 102 (277)
T PRK13642 25 GVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVED--D 102 (277)
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHHH--H
Confidence 49999999999999999999999999999865321 11235678999999974 34445554 5
Q ss_pred cccCCC--CCCH----HHHHHHHHHccchhh----HhhCCccccccc-----------------ccCCCCHHHHHHHHHH
Q 047286 148 IPYGKQ--NASD----EHIRPAVQLANAEKS----IDKLPLGLDTVV-----------------ATNAVDAQSERIVQAA 200 (632)
Q Consensus 148 i~~~~~--~~~~----~~~~~~~~~~~l~~~----i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~ 200 (632)
+.++.. .... +++.++++.+++.+. +..||+|..+++ +|++||+.+++.+.+.
T Consensus 103 i~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~ 182 (277)
T PRK13642 103 VAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRV 182 (277)
T ss_pred HHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 654321 1122 345667777776544 456888888777 3999999999999999
Q ss_pred HHHHhC--CceEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHhcC
Q 047286 201 MVKLVT--NQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIED 246 (632)
Q Consensus 201 l~~~~~--~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~~ 246 (632)
|+++.+ +.|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 183 l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 183 IHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 998864 7899999999999888999999999999999999998754
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.7e-21 Score=193.10 Aligned_cols=159 Identities=19% Similarity=0.256 Sum_probs=122.9
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC---------------------cHHhhcceEEEcccCccccc-cc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA---------------------PEAEQEKIGLVSKEPIFLFC-DF 142 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~---------------------~~~~r~~i~~v~Q~~~~~~~-~~ 142 (632)
.+||++++||+++|+||||||||||+++|+|..... ....++.++|++|++.++.. ++
T Consensus 20 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 99 (242)
T PRK11124 20 DITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTV 99 (242)
T ss_pred eeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCccccCCCcH
Confidence 399999999999999999999999999998653210 01246689999999976643 55
Q ss_pred ccccccccCC---CCC----CHHHHHHHHHHccchh----hHhhCCcccccccc-----------------cCCCCHHHH
Q 047286 143 NEGQYIPYGK---QNA----SDEHIRPAVQLANAEK----SIDKLPLGLDTVVA-----------------TNAVDAQSE 194 (632)
Q Consensus 143 ~~~~~i~~~~---~~~----~~~~~~~~~~~~~l~~----~i~~l~~g~~~~v~-----------------ts~LD~~~~ 194 (632)
.+ |+.+.. ... ..+++.+.++..++.+ .+..||+|+.++++ |++||+.++
T Consensus 100 ~e--~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~ 177 (242)
T PRK11124 100 QQ--NLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEIT 177 (242)
T ss_pred HH--HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHH
Confidence 44 554210 011 1234566777777654 35668888888773 999999999
Q ss_pred HHHHHHHHHHhC-CceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhc
Q 047286 195 RIVQAAMVKLVT-NQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIE 245 (632)
Q Consensus 195 ~~i~~~l~~~~~-~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~ 245 (632)
+.+.+.|+++.+ ++|+|++||++..+.. ||++++|++|++++.|+++++..
T Consensus 178 ~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 230 (242)
T PRK11124 178 AQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTQ 230 (242)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhcC
Confidence 999999998864 7899999999998865 99999999999999999888753
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.8e-21 Score=198.23 Aligned_cols=160 Identities=25% Similarity=0.382 Sum_probs=123.9
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC-------------------CcHHhhcceEEEcccC--cccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY-------------------APEAEQEKIGLVSKEP--IFLFCDFN 143 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~-------------------~~~~~r~~i~~v~Q~~--~~~~~~~~ 143 (632)
.+||+|++|++++|+||||||||||+++|.|+... .....++.++|++|++ .++..++.
T Consensus 25 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~ 104 (280)
T PRK13649 25 DVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVL 104 (280)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhccccHH
Confidence 49999999999999999999999999999865311 0123466799999997 45555555
Q ss_pred cccccccCCC--CCCH----HHHHHHHHHccch-----hhHhhCCccccccc-----------------ccCCCCHHHHH
Q 047286 144 EGQYIPYGKQ--NASD----EHIRPAVQLANAE-----KSIDKLPLGLDTVV-----------------ATNAVDAQSER 195 (632)
Q Consensus 144 ~~~~i~~~~~--~~~~----~~~~~~~~~~~l~-----~~i~~l~~g~~~~v-----------------~ts~LD~~~~~ 195 (632)
+ |+.++.. ..+. +.+.++++..++. ..+.+||+|+.+++ +|++||+.+++
T Consensus 105 e--~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~ 182 (280)
T PRK13649 105 K--DVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRK 182 (280)
T ss_pred H--HHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 5 5554311 1122 2345667777664 23567899998887 39999999999
Q ss_pred HHHHHHHHHhC-CceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcC
Q 047286 196 IVQAAMVKLVT-NQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIED 246 (632)
Q Consensus 196 ~i~~~l~~~~~-~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~ 246 (632)
.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 183 ~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 235 (280)
T PRK13649 183 ELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQD 235 (280)
T ss_pred HHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999998854 7899999999998864 999999999999999999988653
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2e-21 Score=197.96 Aligned_cols=160 Identities=23% Similarity=0.351 Sum_probs=123.5
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC---------------CcHHhhcceEEEcccCc-cccc-ccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY---------------APEAEQEKIGLVSKEPI-FLFC-DFNEGQY 147 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~---------------~~~~~r~~i~~v~Q~~~-~~~~-~~~~~~~ 147 (632)
.+||++++||+++|+||||||||||+++|+|+... .....++.++|++|++. .+.. ++.+ |
T Consensus 27 ~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~--~ 104 (269)
T PRK13648 27 DVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKY--D 104 (269)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHHH--H
Confidence 49999999999999999999999999999865321 11235678999999985 3333 3333 4
Q ss_pred cccCCC--CCC----HHHHHHHHHHccchh----hHhhCCccccccc-----------------ccCCCCHHHHHHHHHH
Q 047286 148 IPYGKQ--NAS----DEHIRPAVQLANAEK----SIDKLPLGLDTVV-----------------ATNAVDAQSERIVQAA 200 (632)
Q Consensus 148 i~~~~~--~~~----~~~~~~~~~~~~l~~----~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~ 200 (632)
+.++.. ... .+++.++++..++.+ .+..||.|+.+++ +|++||+.+++.+.+.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~ 184 (269)
T PRK13648 105 VAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDL 184 (269)
T ss_pred HHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 544321 111 234567777777654 3456888888777 3999999999999999
Q ss_pred HHHHhC--CceEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHhcC
Q 047286 201 MVKLVT--NQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIED 246 (632)
Q Consensus 201 l~~~~~--~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~~ 246 (632)
|+++.+ +.|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 185 L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 185 VRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred HHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 998853 6899999999988877999999999999999999988654
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.5e-21 Score=191.24 Aligned_cols=152 Identities=16% Similarity=0.323 Sum_probs=118.7
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC--------------CcHHhhcceEEEcccCccccc-ccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY--------------APEAEQEKIGLVSKEPIFLFC-DFNEGQYIP 149 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~--------------~~~~~r~~i~~v~Q~~~~~~~-~~~~~~~i~ 149 (632)
.+||++++||+++|+||||||||||+++|.|+... .+..+++.++|++|++.+|.. ++.+ |+.
T Consensus 23 ~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e--~l~ 100 (218)
T cd03266 23 GVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARE--NLE 100 (218)
T ss_pred ceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHH--HHH
Confidence 39999999999999999999999999999865321 112346789999999976653 5554 554
Q ss_pred cCCC--CC----CHHHHHHHHHHccch----hhHhhCCccccccc-----------------ccCCCCHHHHHHHHHHHH
Q 047286 150 YGKQ--NA----SDEHIRPAVQLANAE----KSIDKLPLGLDTVV-----------------ATNAVDAQSERIVQAAMV 202 (632)
Q Consensus 150 ~~~~--~~----~~~~~~~~~~~~~l~----~~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l~ 202 (632)
+... .. ..+++.++++..++. ..+..||+|.++++ +|++||+.+++.+.+.|+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~ 180 (218)
T cd03266 101 YFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIR 180 (218)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHH
Confidence 3211 11 134567778887765 35678999998877 399999999999999999
Q ss_pred HHh-CCceEEEEecCchHHhh-cCeEEEEeCCeEEEec
Q 047286 203 KLV-TNQTVVIVANCLITIRN-ADCIIMVSKGKIVEKG 238 (632)
Q Consensus 203 ~~~-~~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g 238 (632)
++. +++|+|++||++..+.. ||++++|++|++++.|
T Consensus 181 ~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 181 QLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 985 47899999999988764 9999999999998754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.1e-21 Score=192.01 Aligned_cols=159 Identities=20% Similarity=0.228 Sum_probs=123.1
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC---------------c-HHhhcceEEEcccCccccc-ccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA---------------P-EAEQEKIGLVSKEPIFLFC-DFNEGQY 147 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~---------------~-~~~r~~i~~v~Q~~~~~~~-~~~~~~~ 147 (632)
.+||++++|++++|+||||||||||+++|.|..... + ...++.++|++|++.++.. ++.+ |
T Consensus 21 ~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e--n 98 (241)
T PRK10895 21 DVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYD--N 98 (241)
T ss_pred eeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHH--H
Confidence 399999999999999999999999999998653211 1 1135679999999876653 5544 5
Q ss_pred cccCCC---CCC----HHHHHHHHHHccch----hhHhhCCccccccc-----------------ccCCCCHHHHHHHHH
Q 047286 148 IPYGKQ---NAS----DEHIRPAVQLANAE----KSIDKLPLGLDTVV-----------------ATNAVDAQSERIVQA 199 (632)
Q Consensus 148 i~~~~~---~~~----~~~~~~~~~~~~l~----~~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~ 199 (632)
+.+... ..+ .+++.+.++..++. .....||+|..+++ +|++||+.+++.+.+
T Consensus 99 l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~ 178 (241)
T PRK10895 99 LMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKR 178 (241)
T ss_pred HhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 544211 111 23456667776664 34677999998877 399999999999999
Q ss_pred HHHHHh-CCceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhc
Q 047286 200 AMVKLV-TNQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIE 245 (632)
Q Consensus 200 ~l~~~~-~~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~ 245 (632)
.++++. +++|+|++||+++.+. .||++++|++|++++.|+++++..
T Consensus 179 ~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 179 IIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred HHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 998875 4789999999998775 599999999999999999998864
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.3e-21 Score=195.74 Aligned_cols=157 Identities=19% Similarity=0.256 Sum_probs=122.8
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCc-----------------------HHhhcceEEEcccCccccc-
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAP-----------------------EAEQEKIGLVSKEPIFLFC- 140 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~-----------------------~~~r~~i~~v~Q~~~~~~~- 140 (632)
.+||++++||+++|+||||||||||+++|.|....++ ...++.++|++|++.++..
T Consensus 22 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 101 (262)
T PRK09984 22 AVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRL 101 (262)
T ss_pred cceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccccccCC
Confidence 3999999999999999999999999999986642210 1235579999999876652
Q ss_pred ccccccccccCCC--------------CCCHHHHHHHHHHccchh----hHhhCCccccccc-----------------c
Q 047286 141 DFNEGQYIPYGKQ--------------NASDEHIRPAVQLANAEK----SIDKLPLGLDTVV-----------------A 185 (632)
Q Consensus 141 ~~~~~~~i~~~~~--------------~~~~~~~~~~~~~~~l~~----~i~~l~~g~~~~v-----------------~ 185 (632)
++.+ |+.++.. ....+++.++++..++.+ ....||.|..+++ +
T Consensus 102 tv~e--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 179 (262)
T PRK09984 102 SVLE--NVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEP 179 (262)
T ss_pred cHHH--HHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhcCCCEEEecCc
Confidence 4444 5544311 111345677888777753 4566888988877 3
Q ss_pred cCCCCHHHHHHHHHHHHHHhC--CceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHH
Q 047286 186 TNAVDAQSERIVQAAMVKLVT--NQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDEL 243 (632)
Q Consensus 186 ts~LD~~~~~~i~~~l~~~~~--~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el 243 (632)
|++||+.+.+.+.+.|+++.+ +.|+|++||+++.+. .||++++|++|++++.|+++++
T Consensus 180 t~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 180 IASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQF 240 (262)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHh
Confidence 999999999999999999853 789999999999765 5999999999999999999886
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.7e-21 Score=195.19 Aligned_cols=163 Identities=20% Similarity=0.311 Sum_probs=126.1
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC----------------------cHHhhcceEEEcccCccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA----------------------PEAEQEKIGLVSKEPIFLFCDF 142 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~----------------------~~~~r~~i~~v~Q~~~~~~~~~ 142 (632)
.+||++++|++++|+||||||||||+++|.|+.... ...+++.++|++|++.+|..++
T Consensus 25 ~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~~~tv 104 (261)
T PRK14258 25 GVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSV 104 (261)
T ss_pred ceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCccCcccH
Confidence 399999999999999999999999999998763221 0123567999999988776565
Q ss_pred ccccccccCC------CCCC-HHHHHHHHHHccch--------hhHhhCCccccccc-----------------ccCCCC
Q 047286 143 NEGQYIPYGK------QNAS-DEHIRPAVQLANAE--------KSIDKLPLGLDTVV-----------------ATNAVD 190 (632)
Q Consensus 143 ~~~~~i~~~~------~~~~-~~~~~~~~~~~~l~--------~~i~~l~~g~~~~v-----------------~ts~LD 190 (632)
.+ |+.+.. .... .+++.++++..++. .....||.|+.+++ +|++||
T Consensus 105 ~e--nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD 182 (261)
T PRK14258 105 YD--NVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLD 182 (261)
T ss_pred HH--HHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 55 554321 1111 23456667776652 34567899988877 399999
Q ss_pred HHHHHHHHHHHHHHh--CCceEEEEecCchHHhh-cCeEEEEeC-----CeEEEecChhHHhcCCCc
Q 047286 191 AQSERIVQAAMVKLV--TNQTVVIVANCLITIRN-ADCIIMVSK-----GKIVEKGTHDELIEDPEG 249 (632)
Q Consensus 191 ~~~~~~i~~~l~~~~--~~~tviiitH~~~~~~~-aD~i~vl~~-----G~i~~~g~~~el~~~~~~ 249 (632)
+.+++.+.+.|+++. .+.|+|++||++..+.. ||+|++|++ |++++.|+++++.+.+..
T Consensus 183 ~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~~~~~~ 249 (261)
T PRK14258 183 PIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFGLTKKIFNSPHD 249 (261)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEeCCHHHHHhCCCC
Confidence 999999999999874 37899999999998865 999999999 999999999999765443
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.6e-21 Score=192.57 Aligned_cols=159 Identities=18% Similarity=0.204 Sum_probs=121.0
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC---------------CcH-HhhcceEEEcccCccccc-ccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY---------------APE-AEQEKIGLVSKEPIFLFC-DFNEGQY 147 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~---------------~~~-~~r~~i~~v~Q~~~~~~~-~~~~~~~ 147 (632)
.+||++++||+++|+||||||||||+++|.|+... ++. ..++.++|++|++.+|.. ++.+ |
T Consensus 23 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~--~ 100 (237)
T PRK11614 23 EVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEE--N 100 (237)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHHH--H
Confidence 39999999999999999999999999999865321 011 135679999999876653 5544 5
Q ss_pred cccCCCCC----CHHHHHHHHHHc-cc----hhhHhhCCccccccc-----------------ccCCCCHHHHHHHHHHH
Q 047286 148 IPYGKQNA----SDEHIRPAVQLA-NA----EKSIDKLPLGLDTVV-----------------ATNAVDAQSERIVQAAM 201 (632)
Q Consensus 148 i~~~~~~~----~~~~~~~~~~~~-~l----~~~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l 201 (632)
+.++.... ..+++.++++.. ++ +..+..||+|..+++ +|++||+.+++.+.+.|
T Consensus 101 l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l 180 (237)
T PRK11614 101 LAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTI 180 (237)
T ss_pred HHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHH
Confidence 65432111 122344444444 23 345678999998877 39999999999999999
Q ss_pred HHHh-CCceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhc
Q 047286 202 VKLV-TNQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIE 245 (632)
Q Consensus 202 ~~~~-~~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~ 245 (632)
+++. ++.|+|++||+++.+. .||++++|++|++++.|+++++..
T Consensus 181 ~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 181 EQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred HHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 9885 4789999999998765 599999999999999999999864
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.3e-21 Score=198.70 Aligned_cols=160 Identities=23% Similarity=0.366 Sum_probs=124.2
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC------C----------------cHHhhcceEEEcccCcccccccc
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY------A----------------PEAEQEKIGLVSKEPIFLFCDFN 143 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~------~----------------~~~~r~~i~~v~Q~~~~~~~~~~ 143 (632)
+||+|++||+++|+||||||||||+++|.|+... . ....++.++|++|++.+|..++.
T Consensus 64 is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~ 143 (305)
T PRK14264 64 VSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPKSIR 143 (305)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCccccccHH
Confidence 8999999999999999999999999999876320 0 11245689999999987766555
Q ss_pred cccccccCCC-------------------CCCHHHHHHHHHHccch--------hhHhhCCcccccccc-----------
Q 047286 144 EGQYIPYGKQ-------------------NASDEHIRPAVQLANAE--------KSIDKLPLGLDTVVA----------- 185 (632)
Q Consensus 144 ~~~~i~~~~~-------------------~~~~~~~~~~~~~~~l~--------~~i~~l~~g~~~~v~----------- 185 (632)
+ |+.++.. ....+++.++++.+++. .....||+|..++++
T Consensus 144 e--nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL~~~p~l 221 (305)
T PRK14264 144 E--NISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEV 221 (305)
T ss_pred H--HHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHHhcCCCE
Confidence 5 4543210 01123456667766652 335678899888773
Q ss_pred ------cCCCCHHHHHHHHHHHHHHhCCceEEEEecCchHHhh-cCeE-EEEeCCeEEEecChhHHhcCC
Q 047286 186 ------TNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRN-ADCI-IMVSKGKIVEKGTHDELIEDP 247 (632)
Q Consensus 186 ------ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~-aD~i-~vl~~G~i~~~g~~~el~~~~ 247 (632)
|++||+.+++.+.+.|+++.++.|+|++||++..+.. ||++ ++|++|++++.|+++++.+.+
T Consensus 222 LLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~~G~i~~~g~~~~~~~~~ 291 (305)
T PRK14264 222 ILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGELVEYDDTDKIFENP 291 (305)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEecCCEEEEeCCHHHHHhCc
Confidence 8999999999999999998777899999999999765 9997 578999999999999987543
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.7e-21 Score=196.18 Aligned_cols=160 Identities=23% Similarity=0.383 Sum_probs=124.3
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC---------------CcHHhhcceEEEcccCc--ccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY---------------APEAEQEKIGLVSKEPI--FLFCDFNEGQY 147 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~---------------~~~~~r~~i~~v~Q~~~--~~~~~~~~~~~ 147 (632)
.+||++++||+++|+||||||||||+++|.|+... ++..+++.++|++|++. ++..++.+ |
T Consensus 27 ~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e--n 104 (271)
T PRK13632 27 NVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVED--D 104 (271)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHH--H
Confidence 39999999999999999999999999999865321 11235678999999983 33345555 5
Q ss_pred cccCCC--CCCH----HHHHHHHHHccchhh----HhhCCccccccc-----------------ccCCCCHHHHHHHHHH
Q 047286 148 IPYGKQ--NASD----EHIRPAVQLANAEKS----IDKLPLGLDTVV-----------------ATNAVDAQSERIVQAA 200 (632)
Q Consensus 148 i~~~~~--~~~~----~~~~~~~~~~~l~~~----i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~ 200 (632)
+.++.. .... +++.++++..++.+. +..||+|+.+++ +|++||+.+++.+.+.
T Consensus 105 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~ 184 (271)
T PRK13632 105 IAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKI 184 (271)
T ss_pred HHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 654321 1122 235667777777544 456888888777 3999999999999999
Q ss_pred HHHHhC--CceEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHhcC
Q 047286 201 MVKLVT--NQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIED 246 (632)
Q Consensus 201 l~~~~~--~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~~ 246 (632)
|+++.+ ++|+|++||+++.+..||++++|++|++++.|+.+++...
T Consensus 185 l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 185 MVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred HHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 999853 4899999999998878999999999999999999887653
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.9e-21 Score=195.61 Aligned_cols=165 Identities=17% Similarity=0.295 Sum_probs=123.9
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC---------------cHHhhcceEEEcccCcc-ccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA---------------PEAEQEKIGLVSKEPIF-LFCDFNEGQYI 148 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~---------------~~~~r~~i~~v~Q~~~~-~~~~~~~~~~i 148 (632)
.+||++++||+++|+||||||||||+++|+|+.... ....++.++|++|++.. +....+..+++
T Consensus 31 ~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l 110 (267)
T PRK15112 31 PLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQIL 110 (267)
T ss_pred eeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhHHHHH
Confidence 399999999999999999999999999998653211 11224579999999742 22222222233
Q ss_pred ccC---CC----CCCHHHHHHHHHHccch-h----hHhhCCcccccccc-----------------cCCCCHHHHHHHHH
Q 047286 149 PYG---KQ----NASDEHIRPAVQLANAE-K----SIDKLPLGLDTVVA-----------------TNAVDAQSERIVQA 199 (632)
Q Consensus 149 ~~~---~~----~~~~~~~~~~~~~~~l~-~----~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~ 199 (632)
.+. .. ....+++.++++.+++. + .+..||.|+.++++ |++||+.+++.+.+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~ 190 (267)
T PRK15112 111 DFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLIN 190 (267)
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHH
Confidence 221 00 11134567788888873 3 24678999988773 99999999999999
Q ss_pred HHHHHhC--CceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcCCCc
Q 047286 200 AMVKLVT--NQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIEDPEG 249 (632)
Q Consensus 200 ~l~~~~~--~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~~~~ 249 (632)
.|.++.+ +.|+|++||+++.+.. ||++++|++|++++.|+++++...+..
T Consensus 191 ~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~ 243 (267)
T PRK15112 191 LMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLASPLH 243 (267)
T ss_pred HHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHhcCCCC
Confidence 9999853 7899999999999876 999999999999999999998765433
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.3e-21 Score=191.44 Aligned_cols=148 Identities=25% Similarity=0.273 Sum_probs=115.4
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC---------------cH---H-hhcceEEEcccCccccc-cccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA---------------PE---A-EQEKIGLVSKEPIFLFC-DFNE 144 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~---------------~~---~-~r~~i~~v~Q~~~~~~~-~~~~ 144 (632)
.+||++++|++++|+||||||||||+++|.|+.... +. . .++.++|++|++.+|.. ++.+
T Consensus 22 ~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 101 (218)
T cd03255 22 GVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALE 101 (218)
T ss_pred eeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHH
Confidence 399999999999999999999999999998653211 00 0 24579999999876654 5554
Q ss_pred ccccccCCC--CC----CHHHHHHHHHHccchh----hHhhCCccccccc-----------------ccCCCCHHHHHHH
Q 047286 145 GQYIPYGKQ--NA----SDEHIRPAVQLANAEK----SIDKLPLGLDTVV-----------------ATNAVDAQSERIV 197 (632)
Q Consensus 145 ~~~i~~~~~--~~----~~~~~~~~~~~~~l~~----~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i 197 (632)
|+.++.. .. ..+++.++++..++.+ .+.+||+|+.+++ +|++||+.+++.+
T Consensus 102 --~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l 179 (218)
T cd03255 102 --NVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEV 179 (218)
T ss_pred --HHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHH
Confidence 5554321 11 1345677888877654 4567899998887 3999999999999
Q ss_pred HHHHHHHhC--CceEEEEecCchHHhhcCeEEEEeCCeE
Q 047286 198 QAAMVKLVT--NQTVVIVANCLITIRNADCIIMVSKGKI 234 (632)
Q Consensus 198 ~~~l~~~~~--~~tviiitH~~~~~~~aD~i~vl~~G~i 234 (632)
.+.|+++.+ ++|+|++||+++.+..||++++|++|++
T Consensus 180 ~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 180 MELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 999999854 7899999999988878999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.6e-21 Score=190.46 Aligned_cols=152 Identities=22% Similarity=0.339 Sum_probs=116.5
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCc-------------HHhhcceEEEcccCcccc-ccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAP-------------EAEQEKIGLVSKEPIFLF-CDFNEGQYIPY 150 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~-------------~~~r~~i~~v~Q~~~~~~-~~~~~~~~i~~ 150 (632)
.+||+|++||+++|+||||||||||+++|.|+..... ...++.++|++|++.++. .++.+ |+.+
T Consensus 18 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~--~l~~ 95 (213)
T cd03301 18 DLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYD--NIAF 95 (213)
T ss_pred ceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHH--HHHH
Confidence 3999999999999999999999999999986532110 012356999999987664 35544 5544
Q ss_pred CCC--CCC----HHHHHHHHHHccchhh----HhhCCccccccc-----------------ccCCCCHHHHHHHHHHHHH
Q 047286 151 GKQ--NAS----DEHIRPAVQLANAEKS----IDKLPLGLDTVV-----------------ATNAVDAQSERIVQAAMVK 203 (632)
Q Consensus 151 ~~~--~~~----~~~~~~~~~~~~l~~~----i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l~~ 203 (632)
+.. ... .+++.++++..++.+. +.+||.|+++++ +|++||+.+++.+.+.|++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 175 (213)
T cd03301 96 GLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKR 175 (213)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 311 111 2345667777776543 557889988877 3999999999999999999
Q ss_pred HhC--CceEEEEecCchHHhh-cCeEEEEeCCeEEEec
Q 047286 204 LVT--NQTVVIVANCLITIRN-ADCIIMVSKGKIVEKG 238 (632)
Q Consensus 204 ~~~--~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g 238 (632)
+.+ +.|+|++||++..+.. ||++++|++|++++.|
T Consensus 176 ~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 176 LQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 853 7899999999988765 9999999999998765
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.5e-21 Score=190.55 Aligned_cols=151 Identities=21% Similarity=0.319 Sum_probs=115.0
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC----------cHHhhcceEEEcccCcc---cccccccccccccC
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA----------PEAEQEKIGLVSKEPIF---LFCDFNEGQYIPYG 151 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~----------~~~~r~~i~~v~Q~~~~---~~~~~~~~~~i~~~ 151 (632)
.+||++++||+++|+||||||||||+++|.|+.... ....++.++|++|++.+ +..++.+ |+.+.
T Consensus 17 ~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e--~l~~~ 94 (213)
T cd03235 17 DVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRD--VVLMG 94 (213)
T ss_pred cceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccccCCCCcHHH--HHHhc
Confidence 399999999999999999999999999998653211 11246789999999865 2234444 55443
Q ss_pred CC----------CCCHHHHHHHHHHccchh----hHhhCCccccccc-----------------ccCCCCHHHHHHHHHH
Q 047286 152 KQ----------NASDEHIRPAVQLANAEK----SIDKLPLGLDTVV-----------------ATNAVDAQSERIVQAA 200 (632)
Q Consensus 152 ~~----------~~~~~~~~~~~~~~~l~~----~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~ 200 (632)
.. ....+++.++++..++.+ .+.+||+|+.+++ +|++||+.+++.+.+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~ 174 (213)
T cd03235 95 LYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYEL 174 (213)
T ss_pred cccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 21 012345677888877754 3567888988877 3999999999999999
Q ss_pred HHHHh-CCceEEEEecCchHHhh-cCeEEEEeCCeEEEec
Q 047286 201 MVKLV-TNQTVVIVANCLITIRN-ADCIIMVSKGKIVEKG 238 (632)
Q Consensus 201 l~~~~-~~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g 238 (632)
|+++. ++.|+|++||+++.+.. ||++++|++| +++.|
T Consensus 175 l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 175 LRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 99985 57899999999998865 9999999886 55543
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.4e-21 Score=190.40 Aligned_cols=161 Identities=20% Similarity=0.329 Sum_probs=124.7
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCc-------------HHhhcceEEEcccCcccc-ccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAP-------------EAEQEKIGLVSKEPIFLF-CDFNEGQYIPY 150 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~-------------~~~r~~i~~v~Q~~~~~~-~~~~~~~~i~~ 150 (632)
.++|++++||+++|+||||||||||+++|.|...... ...++.++|++|++.+|. .+..+ |+.+
T Consensus 17 ~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e--~l~~ 94 (235)
T cd03299 17 NVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYK--NIAY 94 (235)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHH--HHHH
Confidence 3999999999999999999999999999986532111 113568999999987664 35544 5544
Q ss_pred CCC--CC----CHHHHHHHHHHccchhh----HhhCCcccccccc-----------------cCCCCHHHHHHHHHHHHH
Q 047286 151 GKQ--NA----SDEHIRPAVQLANAEKS----IDKLPLGLDTVVA-----------------TNAVDAQSERIVQAAMVK 203 (632)
Q Consensus 151 ~~~--~~----~~~~~~~~~~~~~l~~~----i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~~l~~ 203 (632)
... .. ..+++.++++.+++.+. +.+||.|..++++ |++||+.+++.+.+.+++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~ 174 (235)
T cd03299 95 GLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKK 174 (235)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHH
Confidence 311 11 22345677777776544 4568888887773 999999999999999999
Q ss_pred HhC--CceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcCC
Q 047286 204 LVT--NQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIEDP 247 (632)
Q Consensus 204 ~~~--~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~~ 247 (632)
+.. +.|+|++||++..+.. ||++++|++|++++.|+++++...+
T Consensus 175 ~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 221 (235)
T cd03299 175 IRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKKP 221 (235)
T ss_pred HHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhCc
Confidence 753 7899999999998765 9999999999999999999887653
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.3e-21 Score=189.33 Aligned_cols=151 Identities=19% Similarity=0.336 Sum_probs=117.9
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC--------------cHHhhcceEEEcccCccccc-ccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA--------------PEAEQEKIGLVSKEPIFLFC-DFNEGQYIP 149 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~--------------~~~~r~~i~~v~Q~~~~~~~-~~~~~~~i~ 149 (632)
.+||++++| +++|+||||||||||+++|.|+.... +...++.++|++|++.+|.. ++.+ |+.
T Consensus 18 ~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~--~l~ 94 (211)
T cd03264 18 GVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVRE--FLD 94 (211)
T ss_pred ceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCHHH--HHH
Confidence 399999999 99999999999999999998653210 12346789999999986653 5444 554
Q ss_pred cCC-----C-CCCHHHHHHHHHHccchh----hHhhCCccccccc-----------------ccCCCCHHHHHHHHHHHH
Q 047286 150 YGK-----Q-NASDEHIRPAVQLANAEK----SIDKLPLGLDTVV-----------------ATNAVDAQSERIVQAAMV 202 (632)
Q Consensus 150 ~~~-----~-~~~~~~~~~~~~~~~l~~----~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l~ 202 (632)
+.. . ....+++.++++..++.+ .+.+||+|+.+++ +|++||+.+++.+.+.|+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~ 174 (211)
T cd03264 95 YIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLS 174 (211)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence 321 1 111345677788777654 4667899998877 389999999999999999
Q ss_pred HHhCCceEEEEecCchHHh-hcCeEEEEeCCeEEEec
Q 047286 203 KLVTNQTVVIVANCLITIR-NADCIIMVSKGKIVEKG 238 (632)
Q Consensus 203 ~~~~~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g 238 (632)
++.++.|+|++||+++.+. .||++++|++|++++.|
T Consensus 175 ~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 175 ELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9877799999999999886 49999999999998764
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.5e-21 Score=194.20 Aligned_cols=169 Identities=24% Similarity=0.356 Sum_probs=131.1
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCC-------CC-------C---cHHhhcceEEEcccCcc-cccccccccc
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFR-------FY-------A---PEAEQEKIGLVSKEPIF-LFCDFNEGQY 147 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~-------~~-------~---~~~~r~~i~~v~Q~~~~-~~~~~~~~~~ 147 (632)
+||++++||.++|||+||||||||-..|..+. |. . -..+|+++-+|||||+- ++..++..+.
T Consensus 306 isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qI 385 (534)
T COG4172 306 ISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQI 385 (534)
T ss_pred ceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcCceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHH
Confidence 99999999999999999999999988775321 10 1 11268899999999951 2222222212
Q ss_pred cccC----CCC----CCHHHHHHHHHHccchh-----hHhhCCcccccccc-----------------cCCCCHHHHHHH
Q 047286 148 IPYG----KQN----ASDEHIRPAVQLANAEK-----SIDKLPLGLDTVVA-----------------TNAVDAQSERIV 197 (632)
Q Consensus 148 i~~~----~~~----~~~~~~~~~~~~~~l~~-----~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i 197 (632)
|.-| .+. ..++++.++++.++++. +..++++|..++++ ||+||...+.++
T Consensus 386 I~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQv 465 (534)
T COG4172 386 IEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQV 465 (534)
T ss_pred hhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHH
Confidence 2211 111 23466788888898764 44567789988884 999999999999
Q ss_pred HHHHHHHhC--CceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcCCCcHHHHH
Q 047286 198 QAAMVKLVT--NQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIEDPEGAYSQL 254 (632)
Q Consensus 198 ~~~l~~~~~--~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~~~~~~~~~ 254 (632)
.+.++++.+ +-+-++||||+..++. ||+|+||++|+|+|+|+.++++.+|...|.+-
T Consensus 466 v~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G~~~~if~~P~~~YT~~ 525 (534)
T COG4172 466 LDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFANPQHEYTRA 525 (534)
T ss_pred HHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeCCHHHHhcCCCcHHHHH
Confidence 999999853 6799999999999986 99999999999999999999999999888753
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.3e-21 Score=194.22 Aligned_cols=159 Identities=16% Similarity=0.233 Sum_probs=121.9
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC---------------cHH-hhcceEEEcccCccccc-ccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA---------------PEA-EQEKIGLVSKEPIFLFC-DFNEGQY 147 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~---------------~~~-~r~~i~~v~Q~~~~~~~-~~~~~~~ 147 (632)
.+||++++|++++|+||||||||||+++|.|+.... +.. .+..++|++|++.++.. ++.+ |
T Consensus 23 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e--n 100 (255)
T PRK11300 23 NVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIE--N 100 (255)
T ss_pred eeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcHHH--H
Confidence 399999999999999999999999999998653211 111 23458999999986653 5544 5
Q ss_pred cccCCC-----------------C-C---CHHHHHHHHHHccch----hhHhhCCccccccc-----------------c
Q 047286 148 IPYGKQ-----------------N-A---SDEHIRPAVQLANAE----KSIDKLPLGLDTVV-----------------A 185 (632)
Q Consensus 148 i~~~~~-----------------~-~---~~~~~~~~~~~~~l~----~~i~~l~~g~~~~v-----------------~ 185 (632)
+.++.. . . ..+++.++++..++. .....||.|..+++ +
T Consensus 101 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP 180 (255)
T PRK11300 101 LLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEP 180 (255)
T ss_pred HHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 544210 0 0 113455666776664 34667899998877 3
Q ss_pred cCCCCHHHHHHHHHHHHHHhC--CceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhc
Q 047286 186 TNAVDAQSERIVQAAMVKLVT--NQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIE 245 (632)
Q Consensus 186 ts~LD~~~~~~i~~~l~~~~~--~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~ 245 (632)
|++||+.+++.+.+.|.++.+ +.|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 181 t~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 243 (255)
T PRK11300 181 AAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEIRN 243 (255)
T ss_pred ccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCHHHHhh
Confidence 999999999999999998853 6899999999998865 99999999999999999988764
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.7e-21 Score=192.11 Aligned_cols=164 Identities=22% Similarity=0.258 Sum_probs=124.5
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC----CcH------------H-hhcceEEEcccCc-cccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY----APE------------A-EQEKIGLVSKEPI-FLFCDFNEGQ 146 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~----~~~------------~-~r~~i~~v~Q~~~-~~~~~~~~~~ 146 (632)
.+||++++||+++|+||||||||||+++|.|+... ... . .++.++|++|++. .|....+..+
T Consensus 21 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~ 100 (254)
T PRK10418 21 GVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLHTMHT 100 (254)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCccccHHH
Confidence 39999999999999999999999999999976322 111 1 1356999999984 2332222111
Q ss_pred ccc-----cCCCCCCHHHHHHHHHHccchh-------hHhhCCccccccc-----------------ccCCCCHHHHHHH
Q 047286 147 YIP-----YGKQNASDEHIRPAVQLANAEK-------SIDKLPLGLDTVV-----------------ATNAVDAQSERIV 197 (632)
Q Consensus 147 ~i~-----~~~~~~~~~~~~~~~~~~~l~~-------~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i 197 (632)
++. ++. ....+++.++++.+++.+ ....||.|..+++ +|++||+.+++.+
T Consensus 101 ~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l 179 (254)
T PRK10418 101 HARETCLALGK-PADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARI 179 (254)
T ss_pred HHHHHHHHcCC-ChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHH
Confidence 221 121 123456778888887654 3567899998877 3999999999999
Q ss_pred HHHHHHHhC--CceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhcCCCc
Q 047286 198 QAAMVKLVT--NQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIEDPEG 249 (632)
Q Consensus 198 ~~~l~~~~~--~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~~~~~ 249 (632)
.+.|+++.+ +.|+|++||+++.+. .||++++|++|++++.|+.+++.+.+..
T Consensus 180 ~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~ 234 (254)
T PRK10418 180 LDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNAPKH 234 (254)
T ss_pred HHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCCCC
Confidence 999998753 689999999999886 5999999999999999999998765444
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.6e-21 Score=194.02 Aligned_cols=159 Identities=21% Similarity=0.297 Sum_probs=123.1
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC---------------CcHHhhcceEEEcccCccc-cccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY---------------APEAEQEKIGLVSKEPIFL-FCDFNEGQYI 148 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~---------------~~~~~r~~i~~v~Q~~~~~-~~~~~~~~~i 148 (632)
.+||++++||+++|+||||||||||+++|.|+... .+...++.++|++|++.++ ..++.+ |+
T Consensus 19 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e--~l 96 (256)
T TIGR03873 19 GVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRD--VV 96 (256)
T ss_pred eeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCHHH--HH
Confidence 39999999999999999999999999999865321 1123456799999998533 234444 55
Q ss_pred ccCCC--------C--CCHHHHHHHHHHccchh----hHhhCCccccccc-----------------ccCCCCHHHHHHH
Q 047286 149 PYGKQ--------N--ASDEHIRPAVQLANAEK----SIDKLPLGLDTVV-----------------ATNAVDAQSERIV 197 (632)
Q Consensus 149 ~~~~~--------~--~~~~~~~~~~~~~~l~~----~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i 197 (632)
.++.. . ...+++.++++.+++.+ .+..||.|..+++ +|++||+.+++.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l 176 (256)
T TIGR03873 97 ALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLET 176 (256)
T ss_pred HhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHH
Confidence 44311 0 11235677788877654 3567888988777 3999999999999
Q ss_pred HHHHHHHhC-CceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhc
Q 047286 198 QAAMVKLVT-NQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIE 245 (632)
Q Consensus 198 ~~~l~~~~~-~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~ 245 (632)
.+.|+++.+ +.|+|++||+++.+. .||+|++|++|++++.|+.+++..
T Consensus 177 ~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 177 LALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 999999864 689999999999985 599999999999999999988753
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.8e-21 Score=194.17 Aligned_cols=159 Identities=23% Similarity=0.334 Sum_probs=123.2
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC---------------CcHHhhcceEEEcccCcccc-ccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY---------------APEAEQEKIGLVSKEPIFLF-CDFNEGQYI 148 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~---------------~~~~~r~~i~~v~Q~~~~~~-~~~~~~~~i 148 (632)
.+||++++|++++|+||||||||||+++|+|.... .+...++.++|++|++.++. .++.+ |+
T Consensus 25 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~--~~ 102 (265)
T PRK10253 25 NLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQE--LV 102 (265)
T ss_pred ecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHH--HH
Confidence 39999999999999999999999999999865321 11223567999999987654 24443 45
Q ss_pred ccCC-C---------CCCHHHHHHHHHHccchh----hHhhCCccccccc-----------------ccCCCCHHHHHHH
Q 047286 149 PYGK-Q---------NASDEHIRPAVQLANAEK----SIDKLPLGLDTVV-----------------ATNAVDAQSERIV 197 (632)
Q Consensus 149 ~~~~-~---------~~~~~~~~~~~~~~~l~~----~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i 197 (632)
.++. . ....+++.++++..++.+ .+..||+|..+++ +|++||+.+++.+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l 182 (265)
T PRK10253 103 ARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDL 182 (265)
T ss_pred HhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHH
Confidence 4321 0 011235667788777654 4667888988877 3899999999999
Q ss_pred HHHHHHHhC--CceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhc
Q 047286 198 QAAMVKLVT--NQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIE 245 (632)
Q Consensus 198 ~~~l~~~~~--~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~ 245 (632)
.+.|.++.+ +.|+|++||++..+. .||++++|++|++++.|+++++..
T Consensus 183 ~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (265)
T PRK10253 183 LELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVT 233 (265)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhh
Confidence 999999853 689999999998775 599999999999999999988754
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.7e-21 Score=187.89 Aligned_cols=153 Identities=27% Similarity=0.330 Sum_probs=118.7
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC-------------cHHhhcceEEEcccCccccc-cccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA-------------PEAEQEKIGLVSKEPIFLFC-DFNEGQYIPY 150 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~-------------~~~~r~~i~~v~Q~~~~~~~-~~~~~~~i~~ 150 (632)
.+||++++|++++|+||||||||||+++|.|..... ....++.++|++|++.+|.. ++.+ |+.+
T Consensus 16 ~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~e--n~~~ 93 (213)
T TIGR01277 16 EFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQ--NIGL 93 (213)
T ss_pred eeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHH--HHHh
Confidence 499999999999999999999999999998653211 01245679999999986653 5555 5543
Q ss_pred CC-C--C---CCHHHHHHHHHHccchhh----HhhCCccccccc-----------------ccCCCCHHHHHHHHHHHHH
Q 047286 151 GK-Q--N---ASDEHIRPAVQLANAEKS----IDKLPLGLDTVV-----------------ATNAVDAQSERIVQAAMVK 203 (632)
Q Consensus 151 ~~-~--~---~~~~~~~~~~~~~~l~~~----i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l~~ 203 (632)
.. . . ...+++.++++..++.+. ...||.|+.+++ +|++||+.+++.+.+.|++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~ 173 (213)
T TIGR01277 94 GLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQ 173 (213)
T ss_pred HhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence 21 1 1 123456778888877544 456778887777 3999999999999999999
Q ss_pred HhC--CceEEEEecCchHHhh-cCeEEEEeCCeEEEecC
Q 047286 204 LVT--NQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGT 239 (632)
Q Consensus 204 ~~~--~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~ 239 (632)
+.+ +.|+|++||+...+.. ||++++|++|++++.|.
T Consensus 174 ~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 174 LCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 853 6899999999998764 99999999999998874
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.9e-21 Score=176.45 Aligned_cols=161 Identities=20% Similarity=0.380 Sum_probs=127.4
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCC---------------CCCcHHhhcceEEEcccCcccccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFR---------------FYAPEAEQEKIGLVSKEPIFLFCDFNEGQYIP 149 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~---------------~~~~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~ 149 (632)
++|++|++|.+++|+||||+|||||+.+++.+. .++..++.+.++.+-|+.. +...++..+.+.
T Consensus 19 ~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~-i~~rlTV~dLv~ 97 (252)
T COG4604 19 DVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENH-INSRLTVRDLVG 97 (252)
T ss_pred cceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhhch-hhheeEHHHHhh
Confidence 399999999999999999999999999987332 2334456777888888875 444444444555
Q ss_pred cCCCC--------CCHHHHHHHHHHccch----hhHhhCCccccccc-----------------ccCCCCHHHHHHHHHH
Q 047286 150 YGKQN--------ASDEHIRPAVQLANAE----KSIDKLPLGLDTVV-----------------ATNAVDAQSERIVQAA 200 (632)
Q Consensus 150 ~~~~~--------~~~~~~~~~~~~~~l~----~~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~ 200 (632)
||+-. .+...+.++++..++. +++++|++|..++. +.++||.+....+++.
T Consensus 98 FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~ 177 (252)
T COG4604 98 FGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKI 177 (252)
T ss_pred cCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHH
Confidence 65421 2334567777776653 57899999998765 2689999999999999
Q ss_pred HHHHhC--CceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcC
Q 047286 201 MVKLVT--NQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIED 246 (632)
Q Consensus 201 l~~~~~--~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~ 246 (632)
++++.+ ++|+++|-||...+.. +|+|+-|++|+++.+|+++|+++.
T Consensus 178 Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~ 226 (252)
T COG4604 178 LRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP 226 (252)
T ss_pred HHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCH
Confidence 999864 7999999999998864 999999999999999999999864
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.9e-21 Score=191.16 Aligned_cols=119 Identities=24% Similarity=0.285 Sum_probs=90.4
Q ss_pred ccccEEEeeEEEEEecCCCChHHHHHhhhcCCChhh------------hcHHHH--------------------------
Q 047286 498 VRGDIVFEHTVALVGENGNGKSTVISLAERFHNPEQ------------VIYSWI-------------------------- 539 (632)
Q Consensus 498 ~~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~------------~~~~~~-------------------------- 539 (632)
.+-+|.-++..||+|+||+|||||++++.++-.|++ +....+
T Consensus 25 vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~Nv 104 (339)
T COG1135 25 VSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENV 104 (339)
T ss_pred ceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhh
Confidence 444677777889999999999999999999988854 111000
Q ss_pred -----HH---------HHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh------------------------
Q 047286 540 -----II---------KCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY------------------------ 581 (632)
Q Consensus 540 -----~~---------~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~------------------------ 581 (632)
+. ...+.++- -|+.-.-+....+||||||||++||||+..
T Consensus 105 A~PLeiag~~k~ei~~RV~elLel--VgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~ 182 (339)
T COG1135 105 AFPLELAGVPKAEIKQRVAELLEL--VGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILE 182 (339)
T ss_pred hhhHhhcCCCHHHHHHHHHHHHHH--cCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHH
Confidence 00 11122211 145555556788999999999999999432
Q ss_pred -------------hccccchhhhh-cCCEEEEEeCCeEeeecChHHHhccC
Q 047286 582 -------------CGCGSPPYHYK-NADITSVVKNGVIAEKGRHDALMKIT 618 (632)
Q Consensus 582 -------------~~iahrl~~~~-~aD~I~vl~~G~ive~G~h~eL~~~~ 618 (632)
++|||-++.++ -|||+.||++|+|||+|+-.++-.++
T Consensus 183 LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~~P 233 (339)
T COG1135 183 LLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANP 233 (339)
T ss_pred HHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhcCc
Confidence 68899999997 49999999999999999999998864
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=5e-21 Score=190.99 Aligned_cols=153 Identities=18% Similarity=0.222 Sum_probs=118.7
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC---------------cHH---h-hcceEEEcccCccccc-cccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA---------------PEA---E-QEKIGLVSKEPIFLFC-DFNE 144 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~---------------~~~---~-r~~i~~v~Q~~~~~~~-~~~~ 144 (632)
.+||+|++||+++|+||||||||||+++|+|+.... +.. . ++.++|++|++.++.. ++.+
T Consensus 27 ~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e 106 (233)
T PRK11629 27 NVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALE 106 (233)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHH
Confidence 399999999999999999999999999998753211 111 1 2579999999876643 5554
Q ss_pred ccccccCC-----C-CCCHHHHHHHHHHccchh----hHhhCCccccccc-----------------ccCCCCHHHHHHH
Q 047286 145 GQYIPYGK-----Q-NASDEHIRPAVQLANAEK----SIDKLPLGLDTVV-----------------ATNAVDAQSERIV 197 (632)
Q Consensus 145 ~~~i~~~~-----~-~~~~~~~~~~~~~~~l~~----~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i 197 (632)
|+.+.. . ....+++.++++..++.+ ...+||+|+++++ +|++||+.+++.+
T Consensus 107 --~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l 184 (233)
T PRK11629 107 --NVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSI 184 (233)
T ss_pred --HHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH
Confidence 554321 1 112345677888887754 4567889998877 3999999999999
Q ss_pred HHHHHHHh--CCceEEEEecCchHHhhcCeEEEEeCCeEEEecC
Q 047286 198 QAAMVKLV--TNQTVVIVANCLITIRNADCIIMVSKGKIVEKGT 239 (632)
Q Consensus 198 ~~~l~~~~--~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~ 239 (632)
.+.|+++. +++|+|++||+++.+..+|++++|++|++++.++
T Consensus 185 ~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 185 FQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 99999984 3789999999999998888999999999998774
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=99.85 E-value=5e-21 Score=190.81 Aligned_cols=160 Identities=24% Similarity=0.329 Sum_probs=124.2
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCc-------------HHhhcceEEEcccCccccc-cccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAP-------------EAEQEKIGLVSKEPIFLFC-DFNEGQYIPY 150 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~-------------~~~r~~i~~v~Q~~~~~~~-~~~~~~~i~~ 150 (632)
.+||++++|++++|+||||||||||+++|.|...... ...++.++|++|++.+|.. ++.+ |+.+
T Consensus 18 ~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~--nl~~ 95 (232)
T cd03300 18 GVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFE--NIAF 95 (232)
T ss_pred cceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHH--HHHH
Confidence 3999999999999999999999999999986532211 0135679999999987653 5544 4543
Q ss_pred CC--CCC----CHHHHHHHHHHccchh----hHhhCCccccccc-----------------ccCCCCHHHHHHHHHHHHH
Q 047286 151 GK--QNA----SDEHIRPAVQLANAEK----SIDKLPLGLDTVV-----------------ATNAVDAQSERIVQAAMVK 203 (632)
Q Consensus 151 ~~--~~~----~~~~~~~~~~~~~l~~----~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l~~ 203 (632)
.. ... ..+++.++++..++.+ .+..+|.|..+++ +|++||+.+++.+.+.|++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~ 175 (232)
T cd03300 96 GLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKR 175 (232)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 21 111 1345667777777654 3456788888777 3999999999999999999
Q ss_pred HhC--CceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcC
Q 047286 204 LVT--NQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIED 246 (632)
Q Consensus 204 ~~~--~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~ 246 (632)
+.+ +.|+|++||++..+.. ||++++|++|++++.|+++++...
T Consensus 176 ~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~ 221 (232)
T cd03300 176 LQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221 (232)
T ss_pred HHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence 864 7899999999998765 999999999999999999888654
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.3e-21 Score=192.39 Aligned_cols=168 Identities=22% Similarity=0.331 Sum_probs=123.9
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC----------C-----c-----HH----hhcceEEEcccCc-ccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY----------A-----P-----EA----EQEKIGLVSKEPI-FLF 139 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~----------~-----~-----~~----~r~~i~~v~Q~~~-~~~ 139 (632)
.+||++++||+++|+||||||||||+++|.|+... + . .. .++.++|++|++. .+.
T Consensus 24 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 103 (258)
T PRK11701 24 DVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLR 103 (258)
T ss_pred eeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCcccccC
Confidence 39999999999999999999999999999865321 1 0 01 1346999999974 222
Q ss_pred ccccccccccc-----CCCC--CCHHHHHHHHHHccch-----hhHhhCCcccccccc-----------------cCCCC
Q 047286 140 CDFNEGQYIPY-----GKQN--ASDEHIRPAVQLANAE-----KSIDKLPLGLDTVVA-----------------TNAVD 190 (632)
Q Consensus 140 ~~~~~~~~i~~-----~~~~--~~~~~~~~~~~~~~l~-----~~i~~l~~g~~~~v~-----------------ts~LD 190 (632)
......+|+.+ .... ...+++.++++..++. .....||+|..++++ |++||
T Consensus 104 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD 183 (258)
T PRK11701 104 MQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLD 183 (258)
T ss_pred ccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 22222223321 1111 1133456677777664 335678899888773 99999
Q ss_pred HHHHHHHHHHHHHHhC--CceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhcCCCcHHH
Q 047286 191 AQSERIVQAAMVKLVT--NQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIEDPEGAYS 252 (632)
Q Consensus 191 ~~~~~~i~~~l~~~~~--~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~~~~~~~~ 252 (632)
+.+++.+.+.|+++.+ +.|+|++||+++.+. .||++++|++|++++.|+++++...+...|.
T Consensus 184 ~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~~~~~~~ 248 (258)
T PRK11701 184 VSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQVLDDPQHPYT 248 (258)
T ss_pred HHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcCCCCHHH
Confidence 9999999999998753 789999999999997 4999999999999999999998765444444
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=5e-21 Score=216.83 Aligned_cols=169 Identities=19% Similarity=0.253 Sum_probs=129.3
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC---------------cH---HhhcceEEEcccCc-ccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA---------------PE---AEQEKIGLVSKEPI-FLFCDFNEG 145 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~---------------~~---~~r~~i~~v~Q~~~-~~~~~~~~~ 145 (632)
.+||+|++||+++|+||||||||||+++|.|+.... +. .++++++|++|++. .++...+..
T Consensus 342 ~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~ 421 (623)
T PRK10261 342 KVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVG 421 (623)
T ss_pred eeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHH
Confidence 399999999999999999999999999998653210 01 13567999999973 223333333
Q ss_pred cccccCC---C----CCCHHHHHHHHHHccch-----hhHhhCCcccccccc-----------------cCCCCHHHHHH
Q 047286 146 QYIPYGK---Q----NASDEHIRPAVQLANAE-----KSIDKLPLGLDTVVA-----------------TNAVDAQSERI 196 (632)
Q Consensus 146 ~~i~~~~---~----~~~~~~~~~~~~~~~l~-----~~i~~l~~g~~~~v~-----------------ts~LD~~~~~~ 196 (632)
+|+.+.. . ....+++.++++.+++. ..+.+||+|++++++ |++||+.++..
T Consensus 422 ~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~ 501 (623)
T PRK10261 422 DSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQ 501 (623)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 3443211 1 11124567788888874 245688899988883 99999999999
Q ss_pred HHHHHHHHhC--CceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcCCCcHHHH
Q 047286 197 VQAAMVKLVT--NQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIEDPEGAYSQ 253 (632)
Q Consensus 197 i~~~l~~~~~--~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~~~~~~~~ 253 (632)
+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|+|++.|+++++..++...|..
T Consensus 502 i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~~~~i~~~p~~~~~~ 561 (623)
T PRK10261 502 IINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQHPYTR 561 (623)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhcCCCCHHHH
Confidence 9999999853 6899999999998865 9999999999999999999998776777765
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-20 Score=191.60 Aligned_cols=159 Identities=21% Similarity=0.307 Sum_probs=121.8
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC---------------CcHHhhcceEEEcccCccc-cccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY---------------APEAEQEKIGLVSKEPIFL-FCDFNEGQYI 148 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~---------------~~~~~r~~i~~v~Q~~~~~-~~~~~~~~~i 148 (632)
.+||++++|++++|+||||||||||+++|.|+... .+...++.++|++|++.++ ..++.+ |+
T Consensus 20 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e--~l 97 (258)
T PRK13548 20 DVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEE--VV 97 (258)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHH--HH
Confidence 39999999999999999999999999999875321 1122456799999998753 334444 55
Q ss_pred ccCCCC------CCHHHHHHHHHHccchh----hHhhCCccccccc-----------------------ccCCCCHHHHH
Q 047286 149 PYGKQN------ASDEHIRPAVQLANAEK----SIDKLPLGLDTVV-----------------------ATNAVDAQSER 195 (632)
Q Consensus 149 ~~~~~~------~~~~~~~~~~~~~~l~~----~i~~l~~g~~~~v-----------------------~ts~LD~~~~~ 195 (632)
.++... ...+++.++++..++.+ .+.+||+|.++++ +|++||+.+++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~ 177 (258)
T PRK13548 98 AMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQH 177 (258)
T ss_pred HhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHH
Confidence 543211 11345667788877754 4567888875443 27899999999
Q ss_pred HHHHHHHHHh--CCceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhc
Q 047286 196 IVQAAMVKLV--TNQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIE 245 (632)
Q Consensus 196 ~i~~~l~~~~--~~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~ 245 (632)
.+.+.|+++. ++.|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 178 ~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (258)
T PRK13548 178 HVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLT 230 (258)
T ss_pred HHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHhC
Confidence 9999999885 4789999999999886 599999999999999999988764
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.3e-21 Score=183.17 Aligned_cols=161 Identities=24% Similarity=0.372 Sum_probs=134.3
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcH-------------------HhhcceEEEcccCccccccccccc
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPE-------------------AEQEKIGLVSKEPIFLFCDFNEGQ 146 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~-------------------~~r~~i~~v~Q~~~~~~~~~~~~~ 146 (632)
++|+.+.-.++||-|+||||||||+|+|.|+...+.. ..+++|||||||.-+|. .++...
T Consensus 17 a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFp-H~tVrg 95 (352)
T COG4148 17 ANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFP-HYTVRG 95 (352)
T ss_pred EeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeecccccc-ceEEec
Confidence 7777777789999999999999999999876433211 14778999999997664 555556
Q ss_pred ccccCCCCCCHHHHHHHHHHccchhhHhh----CCcccccccc-----------------cCCCCHHHHHHHHHHHHHHh
Q 047286 147 YIPYGKQNASDEHIRPAVQLANAEKSIDK----LPLGLDTVVA-----------------TNAVDAQSERIVQAAMVKLV 205 (632)
Q Consensus 147 ~i~~~~~~~~~~~~~~~~~~~~l~~~i~~----l~~g~~~~v~-----------------ts~LD~~~~~~i~~~l~~~~ 205 (632)
|+.||.......+..++++..++.+.+++ |++|.+++|+ .++||...+++++-.++++.
T Consensus 96 NL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~ 175 (352)
T COG4148 96 NLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLR 175 (352)
T ss_pred chhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHH
Confidence 89999877777888999999998776655 5578888885 68999999999999999997
Q ss_pred C--CceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcCC
Q 047286 206 T--NQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIEDP 247 (632)
Q Consensus 206 ~--~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~~ 247 (632)
+ +..+++|||.++++.+ ||+|++|++|++.+.|..+++...+
T Consensus 176 ~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~~ 220 (352)
T COG4148 176 DEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSP 220 (352)
T ss_pred HhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcCc
Confidence 5 5689999999988765 9999999999999999999998753
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.7e-21 Score=187.03 Aligned_cols=152 Identities=18% Similarity=0.318 Sum_probs=117.4
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCc-----------HHhhcceEEEcccCccccc-ccccccccccCC
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAP-----------EAEQEKIGLVSKEPIFLFC-DFNEGQYIPYGK 152 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~-----------~~~r~~i~~v~Q~~~~~~~-~~~~~~~i~~~~ 152 (632)
.+||++++|++++|+||||||||||+++|.|+..... ...++.++|++|++.++.. ++.+ |+.+..
T Consensus 18 ~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e--~l~~~~ 95 (210)
T cd03269 18 DISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVID--QLVYLA 95 (210)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCcCCcCCcHHH--HHHHHH
Confidence 3899999999999999999999999999986532110 1245689999999876543 5544 444321
Q ss_pred C--C----CCHHHHHHHHHHccchh----hHhhCCccccccc-----------------ccCCCCHHHHHHHHHHHHHHh
Q 047286 153 Q--N----ASDEHIRPAVQLANAEK----SIDKLPLGLDTVV-----------------ATNAVDAQSERIVQAAMVKLV 205 (632)
Q Consensus 153 ~--~----~~~~~~~~~~~~~~l~~----~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l~~~~ 205 (632)
. . ...+++.++++..++.+ .+.+||.|+.+++ +|++||+.+++.+.+.|+++.
T Consensus 96 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~ 175 (210)
T cd03269 96 QLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELA 175 (210)
T ss_pred HHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence 0 1 12345667777777653 4577999998877 399999999999999999875
Q ss_pred -CCceEEEEecCchHHhh-cCeEEEEeCCeEEEec
Q 047286 206 -TNQTVVIVANCLITIRN-ADCIIMVSKGKIVEKG 238 (632)
Q Consensus 206 -~~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g 238 (632)
+++|+|++||++..+.. ||++++|++|++++.|
T Consensus 176 ~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 176 RAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred HCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 46899999999998865 9999999999998754
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.3e-21 Score=189.66 Aligned_cols=155 Identities=19% Similarity=0.259 Sum_probs=120.7
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC---------------CcHHhhcceEEEcccCcccccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY---------------APEAEQEKIGLVSKEPIFLFCDFNEGQYIP 149 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~---------------~~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~ 149 (632)
.+||++++||+++|+||||||||||+++|.|+... ++...++.++|++|++.++..++.+ |+.
T Consensus 25 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~e--nl~ 102 (225)
T PRK10247 25 NISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYD--NLI 102 (225)
T ss_pred ccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEecccccccccHHH--HHH
Confidence 39999999999999999999999999999875321 1223467899999999877665555 554
Q ss_pred cC----CCCCCHHHHHHHHHHccch-----hhHhhCCccccccc-----------------ccCCCCHHHHHHHHHHHHH
Q 047286 150 YG----KQNASDEHIRPAVQLANAE-----KSIDKLPLGLDTVV-----------------ATNAVDAQSERIVQAAMVK 203 (632)
Q Consensus 150 ~~----~~~~~~~~~~~~~~~~~l~-----~~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l~~ 203 (632)
+. ......+++.++++..++. .....||.|..+++ +|++||+.+++.+.+.|++
T Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 182 (225)
T PRK10247 103 FPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHR 182 (225)
T ss_pred hHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 32 1111244566788887764 23567888988877 3999999999999999999
Q ss_pred HhC--CceEEEEecCchHHhhcCeEEEEe-CCeEEEecChh
Q 047286 204 LVT--NQTVVIVANCLITIRNADCIIMVS-KGKIVEKGTHD 241 (632)
Q Consensus 204 ~~~--~~tviiitH~~~~~~~aD~i~vl~-~G~i~~~g~~~ 241 (632)
+.+ +.|+|++||+.+.++.||++++|+ ++..+++|+|+
T Consensus 183 ~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 183 YVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred HHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 853 789999999999988899999995 66777888775
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.2e-21 Score=189.40 Aligned_cols=149 Identities=21% Similarity=0.297 Sum_probs=114.4
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC---------------cHH---hh-cceEEEcccCcccc-ccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA---------------PEA---EQ-EKIGLVSKEPIFLF-CDFNE 144 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~---------------~~~---~r-~~i~~v~Q~~~~~~-~~~~~ 144 (632)
.+||++++|++++|+||||||||||+++|+|..... +.. ++ +.++|++|++.++. .++.+
T Consensus 23 ~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~ 102 (221)
T TIGR02211 23 GVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALE 102 (221)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHH
Confidence 399999999999999999999999999998653211 111 22 57999999987654 35544
Q ss_pred ccccccCC--CCC----CHHHHHHHHHHccchh----hHhhCCccccccc-----------------ccCCCCHHHHHHH
Q 047286 145 GQYIPYGK--QNA----SDEHIRPAVQLANAEK----SIDKLPLGLDTVV-----------------ATNAVDAQSERIV 197 (632)
Q Consensus 145 ~~~i~~~~--~~~----~~~~~~~~~~~~~l~~----~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i 197 (632)
|+.+.. ... ..+++.++++..++++ ....||+|+.+++ +|++||+.+++.+
T Consensus 103 --~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l 180 (221)
T TIGR02211 103 --NVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKII 180 (221)
T ss_pred --HHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHH
Confidence 554321 011 1334667777777654 4567889988877 3999999999999
Q ss_pred HHHHHHHhC--CceEEEEecCchHHhhcCeEEEEeCCeEE
Q 047286 198 QAAMVKLVT--NQTVVIVANCLITIRNADCIIMVSKGKIV 235 (632)
Q Consensus 198 ~~~l~~~~~--~~tviiitH~~~~~~~aD~i~vl~~G~i~ 235 (632)
.+.|+++.+ ++|+|++||+++.+..||++++|++|+++
T Consensus 181 ~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 181 FDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 999998853 68999999999988889999999999985
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.2e-21 Score=180.96 Aligned_cols=128 Identities=23% Similarity=0.384 Sum_probs=102.7
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC--------------cHHhhcceEEEcccCccccccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA--------------PEAEQEKIGLVSKEPIFLFCDFNEGQYIPY 150 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~--------------~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~ 150 (632)
.+||++++||+++|+||||||||||+++|.|..... +...++.++|++|++.++..++.+ |+
T Consensus 20 ~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~--~i-- 95 (178)
T cd03247 20 NLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRN--NL-- 95 (178)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHH--hh--
Confidence 399999999999999999999999999998653211 112467799999999776555444 43
Q ss_pred CCCCCCHHHHHHHHHHccchhhHhhCCccccccc-----------------ccCCCCHHHHHHHHHHHHHHhCCceEEEE
Q 047286 151 GKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV-----------------ATNAVDAQSERIVQAAMVKLVTNQTVVIV 213 (632)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l~~~~~~~tviii 213 (632)
...||.|+.+++ +|++||+.+++.+.+.|+++.++.|+|++
T Consensus 96 ----------------------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~ 153 (178)
T cd03247 96 ----------------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWI 153 (178)
T ss_pred ----------------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 234444444433 48999999999999999998778899999
Q ss_pred ecCchHHhhcCeEEEEeCCeEEEec
Q 047286 214 ANCLITIRNADCIIMVSKGKIVEKG 238 (632)
Q Consensus 214 tH~~~~~~~aD~i~vl~~G~i~~~g 238 (632)
||+...++.||++++|++|++++.|
T Consensus 154 sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 154 THHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred ecCHHHHHhCCEEEEEECCEEEecC
Confidence 9999998889999999999998754
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.9e-21 Score=199.52 Aligned_cols=116 Identities=21% Similarity=0.230 Sum_probs=90.2
Q ss_pred EEEeeEEEEEecCCCChHHHHHhhhcCCCh-----hh---------hc-----HHHH------------------HHHH-
Q 047286 502 IVFEHTVALVGENGNGKSTVISLAERFHNP-----EQ---------VI-----YSWI------------------IIKC- 543 (632)
Q Consensus 502 I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~-----~~---------~~-----~~~~------------------~~~~- 543 (632)
|.-++++|||||||||||||+++|.|++++ ++ +. ...+ ..++
T Consensus 105 I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~ 184 (329)
T PRK14257 105 IKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVA 184 (329)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCCCcHHHHHH
Confidence 333458999999999999999999999863 11 00 0000 0011
Q ss_pred ------------------HHHHh--cCCCccCcccccCCCCCChHHHHHHHHHHHHhh----------------------
Q 047286 544 ------------------TNFIA--SLPQGSDLNVGERGLQLSGGLKQRIARTRARNY---------------------- 581 (632)
Q Consensus 544 ------------------~~~i~--~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~---------------------- 581 (632)
.+.+. .|++++++.++++|.+||||||||+|||||+++
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i 264 (329)
T PRK14257 185 YGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKI 264 (329)
T ss_pred hHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHH
Confidence 01111 256677889999999999999999999999655
Q ss_pred -------------hccccchhhhhc-CCEEEEEeCCeEeeecChHHHhcc
Q 047286 582 -------------CGCGSPPYHYKN-ADITSVVKNGVIAEKGRHDALMKI 617 (632)
Q Consensus 582 -------------~~iahrl~~~~~-aD~I~vl~~G~ive~G~h~eL~~~ 617 (632)
+++||++.++.. ||+|+||++|+|+|.|+++++...
T Consensus 265 ~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~~ 314 (329)
T PRK14257 265 EELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIH 314 (329)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 789999999987 999999999999999999999875
|
|
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.4e-21 Score=186.79 Aligned_cols=124 Identities=24% Similarity=0.220 Sum_probs=93.5
Q ss_pred cEEEeeEEEEEecCCCChHHHHHhhhcCCChhh------------hcHHHHHHHHHHHHhcCCCccCc-ccccCCCCCCh
Q 047286 501 DIVFEHTVALVGENGNGKSTVISLAERFHNPEQ------------VIYSWIIIKCTNFIASLPQGSDL-NVGERGLQLSG 567 (632)
Q Consensus 501 ~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~------------~~~~~~~~~~~~~i~~lp~g~dt-~vge~G~~LSg 567 (632)
+|.-++++||||+|||||||+.++|.|+++|++ +........+.+.+... |+.. ...-....|||
T Consensus 35 ~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~V--gl~~~~~~ryPhelSG 112 (268)
T COG4608 35 SIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKV--GLPEEFLYRYPHELSG 112 (268)
T ss_pred EEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHh--CCCHHHhhcCCcccCc
Confidence 444456999999999999999999999999975 11111112233333332 2333 23445678999
Q ss_pred HHHHHHHHHHHHhh-------------------------------------hccccchhhhhc-CCEEEEEeCCeEeeec
Q 047286 568 GLKQRIARTRARNY-------------------------------------CGCGSPPYHYKN-ADITSVVKNGVIAEKG 609 (632)
Q Consensus 568 GQrQRiaiARA~~~-------------------------------------~~iahrl~~~~~-aD~I~vl~~G~ive~G 609 (632)
||||||+||||+.. +.|+|.++.+++ ||+|.||..|+|||.|
T Consensus 113 GQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g 192 (268)
T COG4608 113 GQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIG 192 (268)
T ss_pred hhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEec
Confidence 99999999999432 799999999985 9999999999999999
Q ss_pred ChHHHhccCCchhHHHH
Q 047286 610 RHDALMKITDGTYASLT 626 (632)
Q Consensus 610 ~h~eL~~~~~g~y~~l~ 626 (632)
+-+++..++.-.|-+..
T Consensus 193 ~~~~~~~~p~HpYTk~L 209 (268)
T COG4608 193 PTEEVFSNPLHPYTKAL 209 (268)
T ss_pred CHHHHhhCCCCHHHHHH
Confidence 99999987666666543
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.7e-21 Score=192.83 Aligned_cols=129 Identities=26% Similarity=0.289 Sum_probs=106.6
Q ss_pred cEEEeeEEEEEecCCCChHHHHHhhhcCCChhhh------------cH--------------------------------
Q 047286 501 DIVFEHTVALVGENGNGKSTVISLAERFHNPEQV------------IY-------------------------------- 536 (632)
Q Consensus 501 ~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~~------------~~-------------------------------- 536 (632)
+|.-++.+||+|++|||||||+++|.|+++|++- ..
T Consensus 43 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~ 122 (257)
T cd03288 43 YIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCT 122 (257)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCCcccccHHHHhcCcCCCCC
Confidence 4444568999999999999999999999876320 00
Q ss_pred ------HHHHHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh-----------------------------
Q 047286 537 ------SWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY----------------------------- 581 (632)
Q Consensus 537 ------~~~~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~----------------------------- 581 (632)
......+.+++..+|.|+++.+++.+.+||||||||++||||+..
T Consensus 123 ~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~ 202 (257)
T cd03288 123 DDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTA 202 (257)
T ss_pred HHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh
Confidence 000113456788889999999999999999999999999999654
Q ss_pred ------hccccchhhhhcCCEEEEEeCCeEeeecChHHHhccCCchhHHHHHhh
Q 047286 582 ------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKITDGTYASLTALH 629 (632)
Q Consensus 582 ------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~~~~ 629 (632)
+++||+++.+..||+|++|++|+|++.|+++++++..++.|++++..+
T Consensus 203 ~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 256 (257)
T cd03288 203 FADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLVRTD 256 (257)
T ss_pred cCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHHHhcc
Confidence 688999999999999999999999999999999986578899887654
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.9e-21 Score=190.53 Aligned_cols=158 Identities=17% Similarity=0.247 Sum_probs=118.5
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCc-----------------HH-hhcceEEEcccCccccc-ccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAP-----------------EA-EQEKIGLVSKEPIFLFC-DFNEG 145 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~-----------------~~-~r~~i~~v~Q~~~~~~~-~~~~~ 145 (632)
.+||+|++||+++|+||||||||||+++|.|+..+.| .. .+..++|++|++.++.. +..+
T Consensus 18 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~- 96 (243)
T TIGR01978 18 GVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLE- 96 (243)
T ss_pred ccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCcCHHH-
Confidence 3899999999999999999999999999997621111 11 12348999999876543 2322
Q ss_pred cccccCC---C------CCC----HHHHHHHHHHccchh-----hHh-hCCccccccc-----------------ccCCC
Q 047286 146 QYIPYGK---Q------NAS----DEHIRPAVQLANAEK-----SID-KLPLGLDTVV-----------------ATNAV 189 (632)
Q Consensus 146 ~~i~~~~---~------~~~----~~~~~~~~~~~~l~~-----~i~-~l~~g~~~~v-----------------~ts~L 189 (632)
|+.+.. . ..+ .+++.++++..++.+ .+. .||+|+.+++ +|++|
T Consensus 97 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~L 175 (243)
T TIGR01978 97 -FLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGL 175 (243)
T ss_pred -HHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCCcccC
Confidence 332210 0 011 244667777777642 233 4899998887 39999
Q ss_pred CHHHHHHHHHHHHHHh-CCceEEEEecCchHHhh--cCeEEEEeCCeEEEecChhHHh
Q 047286 190 DAQSERIVQAAMVKLV-TNQTVVIVANCLITIRN--ADCIIMVSKGKIVEKGTHDELI 244 (632)
Q Consensus 190 D~~~~~~i~~~l~~~~-~~~tviiitH~~~~~~~--aD~i~vl~~G~i~~~g~~~el~ 244 (632)
|+.+++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 176 D~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 176 DIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVELAK 233 (243)
T ss_pred CHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHHHhc
Confidence 9999999999999986 47899999999998865 7999999999999999988654
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.3e-21 Score=195.25 Aligned_cols=123 Identities=26% Similarity=0.284 Sum_probs=91.8
Q ss_pred ccccEEEeeEEEEEecCCCChHHHHHhhhcCCChhh----------------------------hcH----------HHH
Q 047286 498 VRGDIVFEHTVALVGENGNGKSTVISLAERFHNPEQ----------------------------VIY----------SWI 539 (632)
Q Consensus 498 ~~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~----------------------------~~~----------~~~ 539 (632)
++-+|+=+++++|||||||||||++++|.||.+|++ ++. .+.
T Consensus 22 i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk 101 (338)
T COG3839 22 VNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLK 101 (338)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhh
Confidence 333555556899999999999999999999998854 000 000
Q ss_pred ---------HHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh-----------------------------
Q 047286 540 ---------IIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY----------------------------- 581 (632)
Q Consensus 540 ---------~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~----------------------------- 581 (632)
.....+....| +++..+.....+||||||||+|||||+++
T Consensus 102 ~~~~~k~ei~~rV~eva~~L--~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~l 179 (338)
T COG3839 102 LRGVPKAEIDKRVKEVAKLL--GLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKL 179 (338)
T ss_pred hCCCchHHHHHHHHHHHHHc--CChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHH
Confidence 11222333222 56666667788999999999999999665
Q ss_pred --------hccccch-hhhhcCCEEEEEeCCeEeeecChHHHhccCCchh
Q 047286 582 --------CGCGSPP-YHYKNADITSVVKNGVIAEKGRHDALMKITDGTY 622 (632)
Q Consensus 582 --------~~iahrl-~~~~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y 622 (632)
|.+||.. +.+--||||+||++|+|.+.|++.|+..++...|
T Consensus 180 h~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~n~f 229 (338)
T COG3839 180 HERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPANLF 229 (338)
T ss_pred HHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCccchh
Confidence 7889974 4556799999999999999999999998755443
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.7e-21 Score=186.77 Aligned_cols=147 Identities=28% Similarity=0.389 Sum_probs=113.0
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC---------------CcHHhhcceEEEcccCc--ccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY---------------APEAEQEKIGLVSKEPI--FLFCDFNEGQY 147 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~---------------~~~~~r~~i~~v~Q~~~--~~~~~~~~~~~ 147 (632)
.+||++++|++++|+||||||||||+++|.|+... ++...++.++|++|++. ++..++.+ |
T Consensus 19 ~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~--~ 96 (211)
T cd03225 19 DISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEE--E 96 (211)
T ss_pred ceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHH--H
Confidence 39999999999999999999999999999865321 11234678999999974 34445554 5
Q ss_pred cccCCC--CCC----HHHHHHHHHHccchh----hHhhCCccccccc-----------------ccCCCCHHHHHHHHHH
Q 047286 148 IPYGKQ--NAS----DEHIRPAVQLANAEK----SIDKLPLGLDTVV-----------------ATNAVDAQSERIVQAA 200 (632)
Q Consensus 148 i~~~~~--~~~----~~~~~~~~~~~~l~~----~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~ 200 (632)
+.++.. ... .+++.++++..++.+ .+..||+|+.+++ +|++||+.+++.+.+.
T Consensus 97 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~ 176 (211)
T cd03225 97 VAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLEL 176 (211)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 544211 111 234566777777654 4566888988877 3999999999999999
Q ss_pred HHHHhC-CceEEEEecCchHHhh-cCeEEEEeCCe
Q 047286 201 MVKLVT-NQTVVIVANCLITIRN-ADCIIMVSKGK 233 (632)
Q Consensus 201 l~~~~~-~~tviiitH~~~~~~~-aD~i~vl~~G~ 233 (632)
|+++.+ +.|+|++||+++.+.. ||+|++|++|+
T Consensus 177 l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 177 LKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 998854 7899999999998876 99999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.6e-21 Score=187.23 Aligned_cols=147 Identities=20% Similarity=0.273 Sum_probs=114.0
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC---------------cH---HhhcceEEEcccCcccc-cccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA---------------PE---AEQEKIGLVSKEPIFLF-CDFNEG 145 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~---------------~~---~~r~~i~~v~Q~~~~~~-~~~~~~ 145 (632)
.+||+|++|++++|+||||||||||+++|.|+.... +. ..++.++|++|++.+|. .++.+
T Consensus 20 ~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~- 98 (214)
T TIGR02673 20 DVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYE- 98 (214)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcHHH-
Confidence 399999999999999999999999999998653210 11 24567999999997664 35544
Q ss_pred cccccCC-----C-CCCHHHHHHHHHHccchh----hHhhCCccccccc-----------------ccCCCCHHHHHHHH
Q 047286 146 QYIPYGK-----Q-NASDEHIRPAVQLANAEK----SIDKLPLGLDTVV-----------------ATNAVDAQSERIVQ 198 (632)
Q Consensus 146 ~~i~~~~-----~-~~~~~~~~~~~~~~~l~~----~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~ 198 (632)
|+.+.. . ....+++.++++..++.+ .+..||+|+.+++ +|++||+.+++.+.
T Consensus 99 -~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~ 177 (214)
T TIGR02673 99 -NVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERIL 177 (214)
T ss_pred -HHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHH
Confidence 554421 1 112345677888877754 3567889998877 39999999999999
Q ss_pred HHHHHHh-CCceEEEEecCchHHhh-cCeEEEEeCCe
Q 047286 199 AAMVKLV-TNQTVVIVANCLITIRN-ADCIIMVSKGK 233 (632)
Q Consensus 199 ~~l~~~~-~~~tviiitH~~~~~~~-aD~i~vl~~G~ 233 (632)
+.|+++. +++|+|++||+++.+.. ||++++|++|+
T Consensus 178 ~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 178 DLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 9999985 47899999999998875 99999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.3e-20 Score=185.43 Aligned_cols=148 Identities=34% Similarity=0.461 Sum_probs=111.4
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC---------------cHHhhcceEEEcccCcccccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA---------------PEAEQEKIGLVSKEPIFLFCDFNEGQYIP 149 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~---------------~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~ 149 (632)
.+||+|++|++++|+||||||||||+++|.|+.... ....++.++|++|++.+|..++.+ |+.
T Consensus 32 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~~--nl~ 109 (226)
T cd03248 32 DVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQD--NIA 109 (226)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHhhhHHH--Hhc
Confidence 399999999999999999999999999998663211 112456799999999877666655 566
Q ss_pred cCCCCCCHHHH---------HHHHHHc--cch----hhHhhCCccccccc-----------------ccCCCCHHHHHHH
Q 047286 150 YGKQNASDEHI---------RPAVQLA--NAE----KSIDKLPLGLDTVV-----------------ATNAVDAQSERIV 197 (632)
Q Consensus 150 ~~~~~~~~~~~---------~~~~~~~--~l~----~~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i 197 (632)
++.......++ .+.++.. ++. .....||+|+.+++ +|++||+.+++.+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l 189 (226)
T cd03248 110 YGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQV 189 (226)
T ss_pred cccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 54332222222 2223333 332 23456777777766 3899999999999
Q ss_pred HHHHHHHhCCceEEEEecCchHHhhcCeEEEEeCCeE
Q 047286 198 QAAMVKLVTNQTVVIVANCLITIRNADCIIMVSKGKI 234 (632)
Q Consensus 198 ~~~l~~~~~~~tviiitH~~~~~~~aD~i~vl~~G~i 234 (632)
.+.++++.++.|+|++||+++.+..||+|++|++|++
T Consensus 190 ~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 190 QQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred HHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 9999998767899999999999888999999999974
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=2e-20 Score=188.21 Aligned_cols=159 Identities=20% Similarity=0.292 Sum_probs=121.5
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHH----hhcceEEEcccCccccc-ccccccccccCCCCCCHHH
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEA----EQEKIGLVSKEPIFLFC-DFNEGQYIPYGKQNASDEH 159 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~----~r~~i~~v~Q~~~~~~~-~~~~~~~i~~~~~~~~~~~ 159 (632)
.+||++++||+++|+||||||||||+++|+|+....... .+..++|++|++.++.. +.+..+++.+. .....++
T Consensus 22 ~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~-~~~~~~~ 100 (251)
T PRK09544 22 DVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLR-PGTKKED 100 (251)
T ss_pred eEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhcc-ccccHHH
Confidence 389999999999999999999999999999653222111 13469999999865432 11222233322 1234567
Q ss_pred HHHHHHHccchh----hHhhCCccccccc-----------------ccCCCCHHHHHHHHHHHHHHhC--CceEEEEecC
Q 047286 160 IRPAVQLANAEK----SIDKLPLGLDTVV-----------------ATNAVDAQSERIVQAAMVKLVT--NQTVVIVANC 216 (632)
Q Consensus 160 ~~~~~~~~~l~~----~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l~~~~~--~~tviiitH~ 216 (632)
+.++++.+++.+ .+..||+|..+++ +|++||+.+++.+.+.|+++.+ +.|+|++||+
T Consensus 101 ~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~ 180 (251)
T PRK09544 101 ILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHD 180 (251)
T ss_pred HHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 788888888754 4567889988877 3999999999999999998853 7899999999
Q ss_pred chHHhh-cCeEEEEeCCeEEEecChhHHhc
Q 047286 217 LITIRN-ADCIIMVSKGKIVEKGTHDELIE 245 (632)
Q Consensus 217 ~~~~~~-aD~i~vl~~G~i~~~g~~~el~~ 245 (632)
++.+.. ||++++|++ ++++.|+++++..
T Consensus 181 ~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~ 209 (251)
T PRK09544 181 LHLVMAKTDEVLCLNH-HICCSGTPEVVSL 209 (251)
T ss_pred HHHHHHhCCEEEEECC-ceEeeCCHHHHhC
Confidence 998854 999999965 7999999999864
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-20 Score=168.58 Aligned_cols=151 Identities=21% Similarity=0.275 Sum_probs=117.7
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHH-------------------hhcceEEEcccCccccccccccc
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEA-------------------EQEKIGLVSKEPIFLFCDFNEGQ 146 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~-------------------~r~~i~~v~Q~~~~~~~~~~~~~ 146 (632)
+++.|++||.++||||||||||||+-++.|+...+..+ ..+++|+|+|...+ -.+++..+
T Consensus 29 V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~L-ip~ltAlE 107 (228)
T COG4181 29 VELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHL-IPNLTALE 107 (228)
T ss_pred ceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeec-cccchhhh
Confidence 99999999999999999999999999998764332111 24679999998654 34566555
Q ss_pred ccccCCC-----C-CCHHHHHHHHHHccchhhHh----hCCcccccccc-----------------cCCCCHHHHHHHHH
Q 047286 147 YIPYGKQ-----N-ASDEHIRPAVQLANAEKSID----KLPLGLDTVVA-----------------TNAVDAQSERIVQA 199 (632)
Q Consensus 147 ~i~~~~~-----~-~~~~~~~~~~~~~~l~~~i~----~l~~g~~~~v~-----------------ts~LD~~~~~~i~~ 199 (632)
|+..... . ...+..++.++.+++.+.+. +|++|.+++|+ |.+||..+.+.|.+
T Consensus 108 NV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaD 187 (228)
T COG4181 108 NVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIAD 187 (228)
T ss_pred hccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHH
Confidence 7654321 1 12344667788888766554 55577888884 89999999999999
Q ss_pred HHHHHhC--CceEEEEecCchHHhhcCeEEEEeCCeEEEe
Q 047286 200 AMVKLVT--NQTVVIVANCLITIRNADCIIMVSKGKIVEK 237 (632)
Q Consensus 200 ~l~~~~~--~~tviiitH~~~~~~~aD~i~vl~~G~i~~~ 237 (632)
.+..+.. +.|.|+||||+....+|||++-|.+|+|+++
T Consensus 188 LlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~~ 227 (228)
T COG4181 188 LLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVED 227 (228)
T ss_pred HHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceeccC
Confidence 9988753 6899999999999999999999999999753
|
|
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-20 Score=187.38 Aligned_cols=157 Identities=18% Similarity=0.351 Sum_probs=118.4
Q ss_pred EEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC----------cHHhhcceEEEcccCcccc-cccccccccccCC----
Q 047286 88 QHVPSGTTVALVGQSGSGKSTVINLVESFRFYA----------PEAEQEKIGLVSKEPIFLF-CDFNEGQYIPYGK---- 152 (632)
Q Consensus 88 ~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~----------~~~~r~~i~~v~Q~~~~~~-~~~~~~~~i~~~~---- 152 (632)
|++++||+++|+||||||||||+++|.|....+ ....+++++|++|++.++. ...+..+|+.++.
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~ 80 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHI 80 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhcccccc
Confidence 468999999999999999999999998653211 1123567999999986522 1222222443321
Q ss_pred -----CC-CCHHHHHHHHHHccchh----hHhhCCccccccc-----------------ccCCCCHHHHHHHHHHHHHHh
Q 047286 153 -----QN-ASDEHIRPAVQLANAEK----SIDKLPLGLDTVV-----------------ATNAVDAQSERIVQAAMVKLV 205 (632)
Q Consensus 153 -----~~-~~~~~~~~~~~~~~l~~----~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l~~~~ 205 (632)
.. ...+++.++++..++.+ .+.+||.|+.+++ +|++||+.+++.+.+.|+++.
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~ 160 (223)
T TIGR03771 81 GWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELA 160 (223)
T ss_pred ccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 11 12345677888877654 4567889988877 399999999999999999885
Q ss_pred -CCceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhc
Q 047286 206 -TNQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIE 245 (632)
Q Consensus 206 -~~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~ 245 (632)
++.|+|++||+++.+.. ||+++++ +|++++.|+++++..
T Consensus 161 ~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~ 201 (223)
T TIGR03771 161 GAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQD 201 (223)
T ss_pred HcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcC
Confidence 47899999999998764 9999999 899999999998854
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.3e-21 Score=189.27 Aligned_cols=156 Identities=21% Similarity=0.266 Sum_probs=118.8
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcH----------HhhcceEEEcccCcccc-cccccccccccCC--
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPE----------AEQEKIGLVSKEPIFLF-CDFNEGQYIPYGK-- 152 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~----------~~r~~i~~v~Q~~~~~~-~~~~~~~~i~~~~-- 152 (632)
+||++++||+++|+||||||||||+++|.|+...... ......+|++|++.++. .++.+ |+.+..
T Consensus 4 is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e--~l~~~~~~ 81 (230)
T TIGR01184 4 VNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRE--NIALAVDR 81 (230)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHH--HHHHHHHh
Confidence 8999999999999999999999999999865321111 01123589999987665 35544 554321
Q ss_pred --CCCC----HHHHHHHHHHccchh----hHhhCCccccccc-----------------ccCCCCHHHHHHHHHHHHHHh
Q 047286 153 --QNAS----DEHIRPAVQLANAEK----SIDKLPLGLDTVV-----------------ATNAVDAQSERIVQAAMVKLV 205 (632)
Q Consensus 153 --~~~~----~~~~~~~~~~~~l~~----~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l~~~~ 205 (632)
.... .+++.++++.+++.+ .+..||+|+++++ +|++||+.+++.+.+.|+++.
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~ 161 (230)
T TIGR01184 82 VLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIW 161 (230)
T ss_pred cccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHH
Confidence 1122 234567788777654 4567899998887 399999999999999999875
Q ss_pred C--CceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHH
Q 047286 206 T--NQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDEL 243 (632)
Q Consensus 206 ~--~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el 243 (632)
+ ++|+|++||+++.+.. ||++++|++|++++.|+..++
T Consensus 162 ~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 162 EEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence 3 6899999999998765 999999999999998876655
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-20 Score=188.13 Aligned_cols=151 Identities=22% Similarity=0.280 Sum_probs=116.0
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC---------------cHH---h-hcceEEEcccCccccc-cccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA---------------PEA---E-QEKIGLVSKEPIFLFC-DFNE 144 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~---------------~~~---~-r~~i~~v~Q~~~~~~~-~~~~ 144 (632)
.+||++++||+++|+||||||||||+++|+|+.... +.. . ++.++|++|++.++.. ++.+
T Consensus 28 ~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~ 107 (228)
T PRK10584 28 GVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALE 107 (228)
T ss_pred ccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHH
Confidence 389999999999999999999999999998763211 111 1 2579999999876553 4444
Q ss_pred ccccccCC--CC----CCHHHHHHHHHHccchh----hHhhCCccccccc-----------------ccCCCCHHHHHHH
Q 047286 145 GQYIPYGK--QN----ASDEHIRPAVQLANAEK----SIDKLPLGLDTVV-----------------ATNAVDAQSERIV 197 (632)
Q Consensus 145 ~~~i~~~~--~~----~~~~~~~~~~~~~~l~~----~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i 197 (632)
|+.+.. .. ...+++.++++..++.+ .+..||+|..+++ +|++||+.+++.+
T Consensus 108 --~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l 185 (228)
T PRK10584 108 --NVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKI 185 (228)
T ss_pred --HHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH
Confidence 554321 11 12345677788887754 3566888888777 3999999999999
Q ss_pred HHHHHHHh-C-CceEEEEecCchHHhhcCeEEEEeCCeEEEe
Q 047286 198 QAAMVKLV-T-NQTVVIVANCLITIRNADCIIMVSKGKIVEK 237 (632)
Q Consensus 198 ~~~l~~~~-~-~~tviiitH~~~~~~~aD~i~vl~~G~i~~~ 237 (632)
.+.|+++. + +.|+|++||+++.+..||++++|++|++++.
T Consensus 186 ~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 186 ADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 99999985 3 6899999999998878999999999999764
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.8e-20 Score=186.47 Aligned_cols=152 Identities=24% Similarity=0.290 Sum_probs=113.1
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC---------------Cc---HHhhcceEEEcccCcc-cc--cccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY---------------AP---EAEQEKIGLVSKEPIF-LF--CDFN 143 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~---------------~~---~~~r~~i~~v~Q~~~~-~~--~~~~ 143 (632)
.+||++++||+++|+||||||||||+++|.|.... ++ ...++.++|++|++.. +. .++.
T Consensus 23 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~ 102 (228)
T cd03257 23 DVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIG 102 (228)
T ss_pred CceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCcCCHH
Confidence 39999999999999999999999999999865321 00 2345689999999842 33 3444
Q ss_pred cccccccCC----CCCCHH---H-HHHHHHHccch-----hhHhhCCccccccc-----------------ccCCCCHHH
Q 047286 144 EGQYIPYGK----QNASDE---H-IRPAVQLANAE-----KSIDKLPLGLDTVV-----------------ATNAVDAQS 193 (632)
Q Consensus 144 ~~~~i~~~~----~~~~~~---~-~~~~~~~~~l~-----~~i~~l~~g~~~~v-----------------~ts~LD~~~ 193 (632)
+ |+.+.. .....+ + ..+.++..++. ..+..||+|+.+++ +|++||+.+
T Consensus 103 ~--nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~ 180 (228)
T cd03257 103 E--QIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSV 180 (228)
T ss_pred H--HHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHH
Confidence 4 554321 111111 1 13556666653 34567899998877 399999999
Q ss_pred HHHHHHHHHHHhC--CceEEEEecCchHHh-hcCeEEEEeCCeEEEec
Q 047286 194 ERIVQAAMVKLVT--NQTVVIVANCLITIR-NADCIIMVSKGKIVEKG 238 (632)
Q Consensus 194 ~~~i~~~l~~~~~--~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g 238 (632)
++.+.+.|+++.+ ++|+|++||+++.+. .||++++|++|++++.|
T Consensus 181 ~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 181 QAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 9999999999854 789999999999887 59999999999998754
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.9e-20 Score=185.61 Aligned_cols=156 Identities=19% Similarity=0.316 Sum_probs=121.8
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcH-----------HhhcceEEEcccCcccc-cccccccccccCC
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPE-----------AEQEKIGLVSKEPIFLF-CDFNEGQYIPYGK 152 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~-----------~~r~~i~~v~Q~~~~~~-~~~~~~~~i~~~~ 152 (632)
.+||++++||+++|+||||||||||+++|.|....... ..++.++|++|++.++. .++.+ |+.+..
T Consensus 18 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~--~~~~~~ 95 (223)
T TIGR03740 18 NISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTARE--NLKVHT 95 (223)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCCccccCCHHH--HHHHHH
Confidence 38999999999999999999999999999865321111 01247999999987654 35544 554321
Q ss_pred --CCCCHHHHHHHHHHccchh----hHhhCCccccccc-----------------ccCCCCHHHHHHHHHHHHHHh-CCc
Q 047286 153 --QNASDEHIRPAVQLANAEK----SIDKLPLGLDTVV-----------------ATNAVDAQSERIVQAAMVKLV-TNQ 208 (632)
Q Consensus 153 --~~~~~~~~~~~~~~~~l~~----~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l~~~~-~~~ 208 (632)
.....+++.++++..++++ ....||.|..+++ +|++||+.+++.+.+.|+++. ++.
T Consensus 96 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~ 175 (223)
T TIGR03740 96 TLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGI 175 (223)
T ss_pred HHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCC
Confidence 1224567778888887754 4567899998777 399999999999999999985 478
Q ss_pred eEEEEecCchHHh-hcCeEEEEeCCeEEEecChhH
Q 047286 209 TVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDE 242 (632)
Q Consensus 209 tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~e 242 (632)
|+|++||+++.+. .||++++|++|++++.|++++
T Consensus 176 tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 176 TVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred EEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 9999999999885 599999999999999998764
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.8e-21 Score=182.24 Aligned_cols=161 Identities=17% Similarity=0.323 Sum_probs=126.3
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCc-----------HHhhcceEEEcccCcccccccccccccccC--
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAP-----------EAEQEKIGLVSKEPIFLFCDFNEGQYIPYG-- 151 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~-----------~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~-- 151 (632)
++||++++|++++++|||||||||++++|.++..++. ...+.+|||+|.+-.++. .++..+.+.|.
T Consensus 20 ~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~-k~tv~dql~yla~ 98 (300)
T COG4152 20 NISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEERGLYP-KMTVEDQLKYLAE 98 (300)
T ss_pred ceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhhccCc-cCcHHHHHHHHHH
Confidence 3999999999999999999999999999986543321 224668999999988653 33333344432
Q ss_pred CCCCCHH----HHHHHHHHcc----chhhHhhCCccccccc-----------------ccCCCCHHHHHHHHHHHHHHh-
Q 047286 152 KQNASDE----HIRPAVQLAN----AEKSIDKLPLGLDTVV-----------------ATNAVDAQSERIVQAAMVKLV- 205 (632)
Q Consensus 152 ~~~~~~~----~~~~~~~~~~----l~~~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l~~~~- 205 (632)
....+.+ ++...++... ..+.+++|+.|.++.| ++|||||.+.+.+.+.+.+++
T Consensus 99 LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~ 178 (300)
T COG4152 99 LKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKE 178 (300)
T ss_pred hcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHh
Confidence 1223333 3444555544 3567999999998877 489999999999999999986
Q ss_pred CCceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcC
Q 047286 206 TNQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIED 246 (632)
Q Consensus 206 ~~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~ 246 (632)
+|.|||++||+++.++. ||+++.|++|+.|-+|+.+++.+.
T Consensus 179 ~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~ 220 (300)
T COG4152 179 EGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRS 220 (300)
T ss_pred cCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHh
Confidence 58999999999999976 999999999999999999998763
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.6e-21 Score=186.87 Aligned_cols=148 Identities=22% Similarity=0.297 Sum_probs=114.5
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC---------------c---HHhhcceEEEcccCccccc-ccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA---------------P---EAEQEKIGLVSKEPIFLFC-DFNEG 145 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~---------------~---~~~r~~i~~v~Q~~~~~~~-~~~~~ 145 (632)
.+||++++|++++|+||||||||||+++|.|+.... + ...++.++|++|++.++.. ++.+
T Consensus 19 ~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~- 97 (214)
T cd03292 19 GINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYE- 97 (214)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcHHH-
Confidence 399999999999999999999999999998653211 0 1245679999999976653 5554
Q ss_pred cccccCCC--CC----CHHHHHHHHHHccchh----hHhhCCccccccc-----------------ccCCCCHHHHHHHH
Q 047286 146 QYIPYGKQ--NA----SDEHIRPAVQLANAEK----SIDKLPLGLDTVV-----------------ATNAVDAQSERIVQ 198 (632)
Q Consensus 146 ~~i~~~~~--~~----~~~~~~~~~~~~~l~~----~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~ 198 (632)
|+.+... .. ..+++.++++.+++.+ ....||.|+.+++ +|++||+.+++.+.
T Consensus 98 -~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~ 176 (214)
T cd03292 98 -NVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIM 176 (214)
T ss_pred -HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHH
Confidence 5554311 11 1345667777777654 3567888988877 39999999999999
Q ss_pred HHHHHHh-CCceEEEEecCchHHhh-cCeEEEEeCCeE
Q 047286 199 AAMVKLV-TNQTVVIVANCLITIRN-ADCIIMVSKGKI 234 (632)
Q Consensus 199 ~~l~~~~-~~~tviiitH~~~~~~~-aD~i~vl~~G~i 234 (632)
+.|+++. ++.|+|++||++..+.. ||++++|++|++
T Consensus 177 ~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 177 NLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999985 47899999999998875 999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.9e-21 Score=171.31 Aligned_cols=164 Identities=21% Similarity=0.309 Sum_probs=126.2
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC-------------------------C---cHHhhcceEEEcccCcc
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY-------------------------A---PEAEQEKIGLVSKEPIF 137 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~-------------------------~---~~~~r~~i~~v~Q~~~~ 137 (632)
+|++-++|+.+.|+|.|||||||+++||.-+... + ...+|.++++|+|...+
T Consensus 25 vSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNL 104 (256)
T COG4598 25 VSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNL 104 (256)
T ss_pred eeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcch
Confidence 9999999999999999999999999999522111 1 11267889999998654
Q ss_pred ccccccccccccc------CCC-CCCHHHHHHHHHHccchhhHhh----CCcccccccc-----------------cCCC
Q 047286 138 LFCDFNEGQYIPY------GKQ-NASDEHIRPAVQLANAEKSIDK----LPLGLDTVVA-----------------TNAV 189 (632)
Q Consensus 138 ~~~~~~~~~~i~~------~~~-~~~~~~~~~~~~~~~l~~~i~~----l~~g~~~~v~-----------------ts~L 189 (632)
+ ..++..+|+.- +.. ....++.+..+..+++.+.-+. |++|.+++++ ||+|
T Consensus 105 W-sHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSAL 183 (256)
T COG4598 105 W-SHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSAL 183 (256)
T ss_pred h-HHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHhcCCceEeecCCcccC
Confidence 3 33443334422 211 1123455667777888766555 4578877773 9999
Q ss_pred CHHHHHHHHHHHHHHh-CCceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcCCCcH
Q 047286 190 DAQSERIVQAAMVKLV-TNQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIEDPEGA 250 (632)
Q Consensus 190 D~~~~~~i~~~l~~~~-~~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~~~~~ 250 (632)
||+-..++++.++++. +|+|.+++||.+..++. +.+|++|++|.|-++|+|++++.+|...
T Consensus 184 DPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G~P~qvf~nP~S~ 246 (256)
T COG4598 184 DPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQVFGNPQSP 246 (256)
T ss_pred CHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecccCChHHHhcCCCCH
Confidence 9999999999999996 58999999999999988 8999999999999999999999886543
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-20 Score=185.93 Aligned_cols=151 Identities=20% Similarity=0.280 Sum_probs=116.9
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC-------------------cHHhhcceEEEcccCcccc-ccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA-------------------PEAEQEKIGLVSKEPIFLF-CDFNE 144 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~-------------------~~~~r~~i~~v~Q~~~~~~-~~~~~ 144 (632)
.+||++++ |+++|+||||||||||+++|.|+.... ....++.++|++|++.++. .++.+
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~ 94 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRE 94 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHH
Confidence 48999999 999999999999999999998653210 0123567999999997664 35544
Q ss_pred ccccccCCCC----CCHHHHHHHHHHccchh----hHhhCCccccccc-----------------ccCCCCHHHHHHHHH
Q 047286 145 GQYIPYGKQN----ASDEHIRPAVQLANAEK----SIDKLPLGLDTVV-----------------ATNAVDAQSERIVQA 199 (632)
Q Consensus 145 ~~~i~~~~~~----~~~~~~~~~~~~~~l~~----~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~ 199 (632)
|+.+.... ...+++.++++..++.+ ....||+|+++++ +|++||+.+++.+.+
T Consensus 95 --~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~ 172 (214)
T cd03297 95 --NLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLP 172 (214)
T ss_pred --HHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 55543211 12345677788877654 4567888988777 399999999999999
Q ss_pred HHHHHhC--CceEEEEecCchHHh-hcCeEEEEeCCeEEEec
Q 047286 200 AMVKLVT--NQTVVIVANCLITIR-NADCIIMVSKGKIVEKG 238 (632)
Q Consensus 200 ~l~~~~~--~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g 238 (632)
.|+++.+ ++|+|++||+++.+. .||++++|++|++++.|
T Consensus 173 ~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 173 ELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999853 789999999999886 49999999999998765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-20 Score=195.68 Aligned_cols=74 Identities=22% Similarity=0.260 Sum_probs=61.8
Q ss_pred hhHhhCCccccccc-----------------ccCCCCHHHHHHHHHHHHHHhCCceEEEEecCchHHhh-cCeEEEEeCC
Q 047286 171 KSIDKLPLGLDTVV-----------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRN-ADCIIMVSKG 232 (632)
Q Consensus 171 ~~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~-aD~i~vl~~G 232 (632)
+....+++|...++ +|++||+.+..-+.+.|.+.... ++|+++|.-..+.. |.+|+.|+++
T Consensus 217 k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~-~lVi~sh~QDfln~vCT~Ii~l~~k 295 (614)
T KOG0927|consen 217 KKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI-ILVIVSHSQDFLNGVCTNIIHLDNK 295 (614)
T ss_pred HHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc-eEEEEecchhhhhhHhhhhheeccc
Confidence 45678899988776 39999999999999888876433 89999999999976 9999999999
Q ss_pred e-EEEecChhHHhc
Q 047286 233 K-IVEKGTHDELIE 245 (632)
Q Consensus 233 ~-i~~~g~~~el~~ 245 (632)
+ +..+|++++...
T Consensus 296 kl~~y~Gnydqy~~ 309 (614)
T KOG0927|consen 296 KLIYYEGNYDQYVK 309 (614)
T ss_pred ceeeecCCHHHHhh
Confidence 9 667788887654
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.8e-20 Score=187.10 Aligned_cols=168 Identities=21% Similarity=0.330 Sum_probs=123.5
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC----------C----------cHH----hhcceEEEcccCcc-cc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY----------A----------PEA----EQEKIGLVSKEPIF-LF 139 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~----------~----------~~~----~r~~i~~v~Q~~~~-~~ 139 (632)
.+||+|++|++++|+||||||||||+++|+|+... + +.. .++.++|++|++.. +.
T Consensus 21 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 100 (253)
T TIGR02323 21 DVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLR 100 (253)
T ss_pred cceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCcccccC
Confidence 38999999999999999999999999999865311 0 011 12469999999742 22
Q ss_pred cccccccccc-----cCCCC--CCHHHHHHHHHHccch-----hhHhhCCcccccccc-----------------cCCCC
Q 047286 140 CDFNEGQYIP-----YGKQN--ASDEHIRPAVQLANAE-----KSIDKLPLGLDTVVA-----------------TNAVD 190 (632)
Q Consensus 140 ~~~~~~~~i~-----~~~~~--~~~~~~~~~~~~~~l~-----~~i~~l~~g~~~~v~-----------------ts~LD 190 (632)
......+|+. +.... ...+++.+.++..++. ..+..||+|+.++++ |++||
T Consensus 101 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD 180 (253)
T TIGR02323 101 MRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLD 180 (253)
T ss_pred ccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCC
Confidence 2222222332 11111 1234566677777664 245678999988873 99999
Q ss_pred HHHHHHHHHHHHHHhC--CceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcCCCcHHH
Q 047286 191 AQSERIVQAAMVKLVT--NQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIEDPEGAYS 252 (632)
Q Consensus 191 ~~~~~~i~~~l~~~~~--~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~~~~~~~ 252 (632)
+.+++.+.+.|+++.+ +.|+|++||+++.+.. ||++++|++|++++.|+++++...+...|.
T Consensus 181 ~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~~~~~~~~~~~~~ 245 (253)
T TIGR02323 181 VSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLDDPQHPYT 245 (253)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCHHHHhcCCCCHHH
Confidence 9999999999998743 7899999999998875 999999999999999999998765444444
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.9e-20 Score=189.10 Aligned_cols=159 Identities=21% Similarity=0.253 Sum_probs=121.0
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC-----------------------cHHhhcceEEEcccCcc-ccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA-----------------------PEAEQEKIGLVSKEPIF-LFC 140 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~-----------------------~~~~r~~i~~v~Q~~~~-~~~ 140 (632)
.+||+|++|++++|+||||||||||+++|.|+.... +...++.++|++|++.. +..
T Consensus 19 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~ 98 (272)
T PRK13547 19 DLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQPAFAF 98 (272)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCCCCCCC
Confidence 399999999999999999999999999998653221 11234568999999753 344
Q ss_pred ccccccccccCCC------C----CCHHHHHHHHHHccchh----hHhhCCccccccc----------------------
Q 047286 141 DFNEGQYIPYGKQ------N----ASDEHIRPAVQLANAEK----SIDKLPLGLDTVV---------------------- 184 (632)
Q Consensus 141 ~~~~~~~i~~~~~------~----~~~~~~~~~~~~~~l~~----~i~~l~~g~~~~v---------------------- 184 (632)
++.+ |+.++.. . ...+++.++++..++.+ .+.+||+|+.+++
T Consensus 99 tv~e--~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~ll 176 (272)
T PRK13547 99 SARE--IVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYL 176 (272)
T ss_pred cHHH--HHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccCCCCCEE
Confidence 5544 5544311 0 11234667777777654 4567888876544
Q ss_pred ----ccCCCCHHHHHHHHHHHHHHhC--CceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhc
Q 047286 185 ----ATNAVDAQSERIVQAAMVKLVT--NQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIE 245 (632)
Q Consensus 185 ----~ts~LD~~~~~~i~~~l~~~~~--~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~ 245 (632)
+|++||+.+++.+.+.|+++.+ +.|+|++||+++.+. .||++++|++|++++.|+++++..
T Consensus 177 lLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 177 LLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADVLT 244 (272)
T ss_pred EEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEEecCHHHHcC
Confidence 3889999999999999998853 689999999999886 599999999999999999988854
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.8e-21 Score=186.63 Aligned_cols=148 Identities=24% Similarity=0.289 Sum_probs=113.6
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC-----------------CcHHhhcceEEEcccCcccc-ccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY-----------------APEAEQEKIGLVSKEPIFLF-CDFNEGQ 146 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~-----------------~~~~~r~~i~~v~Q~~~~~~-~~~~~~~ 146 (632)
.+||++++|++++|+||||||||||+++|.|+... .....++.++|++|++.++. .++.+
T Consensus 18 ~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e-- 95 (213)
T cd03262 18 GIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLE-- 95 (213)
T ss_pred CceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCcHHH--
Confidence 38999999999999999999999999999865321 01124678999999997664 35544
Q ss_pred ccccCC---CCCC----HHHHHHHHHHccchh----hHhhCCccccccc-----------------ccCCCCHHHHHHHH
Q 047286 147 YIPYGK---QNAS----DEHIRPAVQLANAEK----SIDKLPLGLDTVV-----------------ATNAVDAQSERIVQ 198 (632)
Q Consensus 147 ~i~~~~---~~~~----~~~~~~~~~~~~l~~----~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~ 198 (632)
|+.++. .... .+++.++++..++.+ .+..||+|+.+++ +|++||+.+++.+.
T Consensus 96 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~ 175 (213)
T cd03262 96 NITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVL 175 (213)
T ss_pred HHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHH
Confidence 554421 1111 234566777777643 4566888988777 39999999999999
Q ss_pred HHHHHHhC-CceEEEEecCchHHhh-cCeEEEEeCCeE
Q 047286 199 AAMVKLVT-NQTVVIVANCLITIRN-ADCIIMVSKGKI 234 (632)
Q Consensus 199 ~~l~~~~~-~~tviiitH~~~~~~~-aD~i~vl~~G~i 234 (632)
+.|+++.+ ++|+|++||++..+.. ||++++|++|++
T Consensus 176 ~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 176 DVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999864 7899999999999865 999999999975
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-20 Score=189.70 Aligned_cols=155 Identities=23% Similarity=0.322 Sum_probs=118.4
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcH----------HhhcceEEEcccCcccc-cccccccccccCCC
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPE----------AEQEKIGLVSKEPIFLF-CDFNEGQYIPYGKQ 153 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~----------~~r~~i~~v~Q~~~~~~-~~~~~~~~i~~~~~ 153 (632)
.+||+|++|++++|+||||||||||+++|+|+...... ..+..++|++|++.++. .++.+ |+.++..
T Consensus 19 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~~~~~~tv~e--~l~~~~~ 96 (255)
T PRK11248 19 DINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEGLLPWRNVQD--NVAFGLQ 96 (255)
T ss_pred eeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCccCCCCcHHH--HHHhHHH
Confidence 39999999999999999999999999999865322111 12245899999987654 35544 5544211
Q ss_pred --CCC----HHHHHHHHHHccchh----hHhhCCccccccc-----------------ccCCCCHHHHHHHHHHHHHHh-
Q 047286 154 --NAS----DEHIRPAVQLANAEK----SIDKLPLGLDTVV-----------------ATNAVDAQSERIVQAAMVKLV- 205 (632)
Q Consensus 154 --~~~----~~~~~~~~~~~~l~~----~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l~~~~- 205 (632)
... .+++.++++..++.+ ....||+|+.+++ +|++||+.+++.+.+.|+++.
T Consensus 97 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~ 176 (255)
T PRK11248 97 LAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQ 176 (255)
T ss_pred HcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH
Confidence 111 245677788877654 4567899998877 399999999999999999973
Q ss_pred -CCceEEEEecCchHHhh-cCeEEEEe--CCeEEEecChh
Q 047286 206 -TNQTVVIVANCLITIRN-ADCIIMVS--KGKIVEKGTHD 241 (632)
Q Consensus 206 -~~~tviiitH~~~~~~~-aD~i~vl~--~G~i~~~g~~~ 241 (632)
.++|+|++||+++.+.. ||++++|+ +|++++.++.+
T Consensus 177 ~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 177 ETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred hcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 37899999999998865 99999998 59999887643
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-20 Score=187.95 Aligned_cols=129 Identities=40% Similarity=0.534 Sum_probs=105.6
Q ss_pred ccccEEEeeEEEEEecCCCChHHHHHhhhcCCChhhh------------cHHH---------------------------
Q 047286 498 VRGDIVFEHTVALVGENGNGKSTVISLAERFHNPEQV------------IYSW--------------------------- 538 (632)
Q Consensus 498 ~~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~~------------~~~~--------------------------- 538 (632)
..-+|.-++.+||+|++|||||||+++|.|++.|++. ....
T Consensus 21 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~ 100 (237)
T cd03252 21 ISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALAD 100 (237)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhccchHHHHhhccC
Confidence 3335555669999999999999999999999876320 0000
Q ss_pred ------HH------HHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh-------------------------
Q 047286 539 ------II------IKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY------------------------- 581 (632)
Q Consensus 539 ------~~------~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~------------------------- 581 (632)
.+ ..+.+++..+|.|+++.....+.+||||||||++||||+..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ 180 (237)
T cd03252 101 PGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRN 180 (237)
T ss_pred CCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 00 13346778889999998888999999999999999999654
Q ss_pred ----------hccccchhhhhcCCEEEEEeCCeEeeecChHHHhccCCchhHHHHH
Q 047286 582 ----------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKITDGTYASLTA 627 (632)
Q Consensus 582 ----------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~~ 627 (632)
+++||.+..+..||+|++|++|++++.|+.++++++ .+.|+.++.
T Consensus 181 l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~~~ 235 (237)
T cd03252 181 MHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE-NGLYAYLYQ 235 (237)
T ss_pred HHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhc-cChHHHHHh
Confidence 678999999989999999999999999999999987 899998875
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.2e-20 Score=185.03 Aligned_cols=150 Identities=18% Similarity=0.217 Sum_probs=114.7
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC---------------cH---HhhcceEEEcccCcccc-cccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA---------------PE---AEQEKIGLVSKEPIFLF-CDFNEG 145 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~---------------~~---~~r~~i~~v~Q~~~~~~-~~~~~~ 145 (632)
.+||++++|++++|+||||||||||+++|.|+.... +. ..++.++|++|++.+++ .++.+
T Consensus 20 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~- 98 (222)
T PRK10908 20 GVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYD- 98 (222)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCccccccccHHH-
Confidence 399999999999999999999999999998653211 01 13568999999987543 34544
Q ss_pred cccccCC--CCCC----HHHHHHHHHHccchh----hHhhCCccccccc-----------------ccCCCCHHHHHHHH
Q 047286 146 QYIPYGK--QNAS----DEHIRPAVQLANAEK----SIDKLPLGLDTVV-----------------ATNAVDAQSERIVQ 198 (632)
Q Consensus 146 ~~i~~~~--~~~~----~~~~~~~~~~~~l~~----~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~ 198 (632)
|+.+.. .... .+++.++++..++.+ ...+||.|+.+++ +|++||+.+++.+.
T Consensus 99 -~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~ 177 (222)
T PRK10908 99 -NVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGIL 177 (222)
T ss_pred -HHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHH
Confidence 555431 1112 224556777777644 4567888988877 39999999999999
Q ss_pred HHHHHHh-CCceEEEEecCchHHhh-cCeEEEEeCCeEEE
Q 047286 199 AAMVKLV-TNQTVVIVANCLITIRN-ADCIIMVSKGKIVE 236 (632)
Q Consensus 199 ~~l~~~~-~~~tviiitH~~~~~~~-aD~i~vl~~G~i~~ 236 (632)
+.|+++. ++.|+|++||+++.+.. ||++++|++|+++.
T Consensus 178 ~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 178 RLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 9999885 46899999999999876 99999999999864
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.4e-20 Score=184.58 Aligned_cols=159 Identities=18% Similarity=0.279 Sum_probs=120.1
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC--------------CcHHhhcceEEEcccCccc-ccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY--------------APEAEQEKIGLVSKEPIFL-FCDFNEGQYIP 149 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~--------------~~~~~r~~i~~v~Q~~~~~-~~~~~~~~~i~ 149 (632)
.+||++++|++++|+||||||||||+++|.|+... ++...++.++|++|++.++ ..++.+ |+.
T Consensus 14 ~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~--nl~ 91 (248)
T PRK03695 14 PLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQ--YLT 91 (248)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHH--HHH
Confidence 39999999999999999999999999999865321 1123456699999997543 334444 554
Q ss_pred cCCCC-C----CHHHHHHHHHHccchh----hHhhCCccccccc------------------------ccCCCCHHHHHH
Q 047286 150 YGKQN-A----SDEHIRPAVQLANAEK----SIDKLPLGLDTVV------------------------ATNAVDAQSERI 196 (632)
Q Consensus 150 ~~~~~-~----~~~~~~~~~~~~~l~~----~i~~l~~g~~~~v------------------------~ts~LD~~~~~~ 196 (632)
+.... . ..+++.++++..++.+ .+..||.|+.+++ +|++||+.+++.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~ 171 (248)
T PRK03695 92 LHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAA 171 (248)
T ss_pred hcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHH
Confidence 43211 1 1345677788777754 3556777764332 278999999999
Q ss_pred HHHHHHHHh-CCceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhc
Q 047286 197 VQAAMVKLV-TNQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIE 245 (632)
Q Consensus 197 i~~~l~~~~-~~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~ 245 (632)
+.+.|+++. ++.|+|++||+++.+. .||++++|++|++++.|+++++..
T Consensus 172 l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 172 LDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222 (248)
T ss_pred HHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence 999999885 4789999999999775 599999999999999999988754
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.1e-20 Score=189.04 Aligned_cols=167 Identities=20% Similarity=0.208 Sum_probs=124.3
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC---------------c---HHhhcceEEEcccCcc-cccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA---------------P---EAEQEKIGLVSKEPIF-LFCDFNEG 145 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~---------------~---~~~r~~i~~v~Q~~~~-~~~~~~~~ 145 (632)
.+||++++|++++|+||||||||||+++|.|+.... + ...++.++|++|++.. |.......
T Consensus 30 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~ 109 (268)
T PRK10419 30 NVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVR 109 (268)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCCCCCHH
Confidence 399999999999999999999999999998653210 1 1246689999999842 33222222
Q ss_pred cccccC-----CCC--CCHHHHHHHHHHccch-----hhHhhCCccccccc-----------------ccCCCCHHHHHH
Q 047286 146 QYIPYG-----KQN--ASDEHIRPAVQLANAE-----KSIDKLPLGLDTVV-----------------ATNAVDAQSERI 196 (632)
Q Consensus 146 ~~i~~~-----~~~--~~~~~~~~~~~~~~l~-----~~i~~l~~g~~~~v-----------------~ts~LD~~~~~~ 196 (632)
+++.+. ... ...+++.++++..++. .....+|.|..+++ +|++||+.+++.
T Consensus 110 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~ 189 (268)
T PRK10419 110 EIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAG 189 (268)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHH
Confidence 233221 101 1123567777777764 24567889988877 399999999999
Q ss_pred HHHHHHHHhC--CceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcCCCcHHH
Q 047286 197 VQAAMVKLVT--NQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIEDPEGAYS 252 (632)
Q Consensus 197 i~~~l~~~~~--~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~~~~~~~ 252 (632)
+.+.|+++.+ +.|+|++||++..+.. ||++++|++|++++.|+++++... ...|.
T Consensus 190 ~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~~-~~~~~ 247 (268)
T PRK10419 190 VIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDKLTF-SSPAG 247 (268)
T ss_pred HHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCChhhccCC-CCHHH
Confidence 9999998853 7899999999999875 999999999999999999998754 44444
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.9e-20 Score=175.51 Aligned_cols=160 Identities=21% Similarity=0.283 Sum_probs=124.5
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC---------------Cc-HHhhcceEEEcccCcccccccccccccc
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY---------------AP-EAEQEKIGLVSKEPIFLFCDFNEGQYIP 149 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~---------------~~-~~~r~~i~~v~Q~~~~~~~~~~~~~~i~ 149 (632)
+||++++||+++++|+||+|||||+++|+|+... +| ...|..|+||||...+|. .++..+|+.
T Consensus 22 vsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~-~LTVeENL~ 100 (237)
T COG0410 22 VSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFP-RLTVEENLL 100 (237)
T ss_pred eeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchh-hCcHHHHHh
Confidence 9999999999999999999999999999875321 11 225778999999987654 555556887
Q ss_pred cCCCC-----CCHHHHHHHHHHcc-----chhhHhhCCcccccccc-----------------cCCCCHHHHHHHHHHHH
Q 047286 150 YGKQN-----ASDEHIRPAVQLAN-----AEKSIDKLPLGLDTVVA-----------------TNAVDAQSERIVQAAMV 202 (632)
Q Consensus 150 ~~~~~-----~~~~~~~~~~~~~~-----l~~~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~~l~ 202 (632)
++... .....++++.+..- .+..-..||+|.++.++ |.||-|.-.++|.+.|+
T Consensus 101 ~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~ 180 (237)
T COG0410 101 LGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIK 180 (237)
T ss_pred hhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHH
Confidence 65221 11111445555432 23445678999988874 88999999999999999
Q ss_pred HHhC--CceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhcC
Q 047286 203 KLVT--NQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIED 246 (632)
Q Consensus 203 ~~~~--~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~~ 246 (632)
++++ +.||++|.++...+. .+||.++|++|+|+.+|+.+|+..+
T Consensus 181 ~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~ 227 (237)
T COG0410 181 ELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD 227 (237)
T ss_pred HHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC
Confidence 9974 569999999997765 5999999999999999999999865
|
|
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.2e-20 Score=179.93 Aligned_cols=154 Identities=23% Similarity=0.352 Sum_probs=122.2
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHHhhcceEEEcccCcccccccccccccccCCCCCCHHHHHHHH
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAV 164 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 164 (632)
.|||+|++||+++|||+||||||||-++|. +...|.. ..|-|-.++ +.. + ......+++.+.+
T Consensus 31 ~Vsf~i~~ge~~glVGESG~GKSTlgr~i~--~L~~pt~--G~i~f~g~~-------i~~---~---~~~~~~~~v~elL 93 (268)
T COG4608 31 GVSFSIKEGETLGLVGESGCGKSTLGRLIL--GLEEPTS--GEILFEGKD-------ITK---L---SKEERRERVLELL 93 (268)
T ss_pred ceeEEEcCCCEEEEEecCCCCHHHHHHHHH--cCcCCCC--ceEEEcCcc-------hhh---c---chhHHHHHHHHHH
Confidence 399999999999999999999999999998 4454432 223222222 111 0 0122346688888
Q ss_pred HHccchh-----hHhhCCcccccccc-----------------cCCCCHHHHHHHHHHHHHHhC--CceEEEEecCchHH
Q 047286 165 QLANAEK-----SIDKLPLGLDTVVA-----------------TNAVDAQSERIVQAAMVKLVT--NQTVVIVANCLITI 220 (632)
Q Consensus 165 ~~~~l~~-----~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~~l~~~~~--~~tviiitH~~~~~ 220 (632)
+.+++.+ +..++++|+.++++ +|+||...+.++.+.+.++.+ +-|.++||||++.+
T Consensus 94 ~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv 173 (268)
T COG4608 94 EKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVV 173 (268)
T ss_pred HHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhh
Confidence 8888654 34456778888883 899999999999999999864 78999999999999
Q ss_pred hh-cCeEEEEeCCeEEEecChhHHhcCCCcHHHHHH
Q 047286 221 RN-ADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLV 255 (632)
Q Consensus 221 ~~-aD~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~ 255 (632)
++ ||||.||..|+|++.|+.+++..++.++|.+..
T Consensus 174 ~~isdri~VMy~G~iVE~g~~~~~~~~p~HpYTk~L 209 (268)
T COG4608 174 RYISDRIAVMYLGKIVEIGPTEEVFSNPLHPYTKAL 209 (268)
T ss_pred hhhcccEEEEecCceeEecCHHHHhhCCCCHHHHHH
Confidence 87 999999999999999999999999999998754
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.9e-20 Score=178.55 Aligned_cols=146 Identities=27% Similarity=0.379 Sum_probs=110.1
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHH--hhcceEEEcccCcccccccccccccccCCCCCCHHHHHH
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEA--EQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRP 162 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~--~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 162 (632)
.+||+|++|++++|+||||||||||+++|.|+...+..+ +..+++|++|+|.++..++.+ |+.+... ...++..+
T Consensus 23 ~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~~~t~~e--nl~~~~~-~~~~~~~~ 99 (204)
T cd03250 23 DINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQNGTIRE--NILFGKP-FDEERYEK 99 (204)
T ss_pred eeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhccCcHHH--HhccCCC-cCHHHHHH
Confidence 399999999999999999999999999999653322221 223699999999988777666 6766532 23445566
Q ss_pred HHHHccchhhHhhC---------------Cccccccc-----------------ccCCCCHHHHHHHHH-HHHHHh-CCc
Q 047286 163 AVQLANAEKSIDKL---------------PLGLDTVV-----------------ATNAVDAQSERIVQA-AMVKLV-TNQ 208 (632)
Q Consensus 163 ~~~~~~l~~~i~~l---------------~~g~~~~v-----------------~ts~LD~~~~~~i~~-~l~~~~-~~~ 208 (632)
+++.+++.+.+..+ |.|..+++ +|++||+.+.+.+.+ .+++.. ++.
T Consensus 100 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~ 179 (204)
T cd03250 100 VIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNK 179 (204)
T ss_pred HHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCC
Confidence 66666666655544 44444444 389999999998887 456553 468
Q ss_pred eEEEEecCchHHhhcCeEEEEeCCe
Q 047286 209 TVVIVANCLITIRNADCIIMVSKGK 233 (632)
Q Consensus 209 tviiitH~~~~~~~aD~i~vl~~G~ 233 (632)
|+|++||++..+..||++++|++|+
T Consensus 180 tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 180 TRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred EEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 9999999999888899999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.4e-20 Score=207.00 Aligned_cols=167 Identities=22% Similarity=0.311 Sum_probs=125.6
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC--------------CcH---HhhcceEEEcccCc-ccccccccccc
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY--------------APE---AEQEKIGLVSKEPI-FLFCDFNEGQY 147 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~--------------~~~---~~r~~i~~v~Q~~~-~~~~~~~~~~~ 147 (632)
+||+|++||+++|+||||||||||+++|.|+... ++. .++++++|++|++. .++...+..+|
T Consensus 305 isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~ 384 (529)
T PRK15134 305 ISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQI 384 (529)
T ss_pred ceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHH
Confidence 9999999999999999999999999999875310 001 12567999999973 12222233335
Q ss_pred cccCC------CCC--CHHHHHHHHHHccch-----hhHhhCCcccccccc-----------------cCCCCHHHHHHH
Q 047286 148 IPYGK------QNA--SDEHIRPAVQLANAE-----KSIDKLPLGLDTVVA-----------------TNAVDAQSERIV 197 (632)
Q Consensus 148 i~~~~------~~~--~~~~~~~~~~~~~l~-----~~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i 197 (632)
+.++. ... ..+++.++++..++. ..+.+||+|++++++ |++||+.+++.+
T Consensus 385 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l 464 (529)
T PRK15134 385 IEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQI 464 (529)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHH
Confidence 54321 011 124566778877774 235688999998883 999999999999
Q ss_pred HHHHHHHhC--CceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcCCCcHHH
Q 047286 198 QAAMVKLVT--NQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIEDPEGAYS 252 (632)
Q Consensus 198 ~~~l~~~~~--~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~~~~~~~ 252 (632)
++.|+++.+ +.|+|++||++..+.. ||+|++|++|++++.|+++++.+.+...|.
T Consensus 465 ~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~ 522 (529)
T PRK15134 465 LALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERVFAAPQQEYT 522 (529)
T ss_pred HHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEEcCHHHHhcCCCChHH
Confidence 999999853 6899999999998865 999999999999999999999766544443
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.6e-20 Score=175.96 Aligned_cols=121 Identities=24% Similarity=0.405 Sum_probs=97.4
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC---------------CcHHhhcceEEEcccCcccccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY---------------APEAEQEKIGLVSKEPIFLFCDFNEGQYIP 149 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~---------------~~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~ 149 (632)
.+||++++||+++|+||||||||||+++|.|.... .+...++.++|++|++.++..++.+ |+
T Consensus 20 ~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~--~l- 96 (173)
T cd03246 20 NVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAE--NI- 96 (173)
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHH--HC-
Confidence 39999999999999999999999999999865321 1123467899999999776655444 43
Q ss_pred cCCCCCCHHHHHHHHHHccchhhHhhCCccccccc-----------------ccCCCCHHHHHHHHHHHHHHhC-CceEE
Q 047286 150 YGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV-----------------ATNAVDAQSERIVQAAMVKLVT-NQTVV 211 (632)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l~~~~~-~~tvi 211 (632)
||.|+.+++ +|++||+.+++.+.+.|+++.+ ++|+|
T Consensus 97 --------------------------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii 150 (173)
T cd03246 97 --------------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRI 150 (173)
T ss_pred --------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEE
Confidence 344443333 4899999999999999998854 78999
Q ss_pred EEecCchHHhhcCeEEEEeCCeE
Q 047286 212 IVANCLITIRNADCIIMVSKGKI 234 (632)
Q Consensus 212 iitH~~~~~~~aD~i~vl~~G~i 234 (632)
++||+++.+..||++++|++|++
T Consensus 151 ~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 151 VIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EEeCCHHHHHhCCEEEEEECCCC
Confidence 99999998888999999999974
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.9e-20 Score=187.43 Aligned_cols=158 Identities=22% Similarity=0.311 Sum_probs=117.4
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcH-----------Hh-hcceEEEcccCccc---ccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPE-----------AE-QEKIGLVSKEPIFL---FCDFNEGQYIP 149 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~-----------~~-r~~i~~v~Q~~~~~---~~~~~~~~~i~ 149 (632)
.+||+|++|++++|+||||||||||+++|+|+...... .. +..++|++|++.+. ..++.+ ++.
T Consensus 25 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~--~i~ 102 (272)
T PRK15056 25 DASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVED--VVM 102 (272)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEeccccccccCCCcchhh--hee
Confidence 39999999999999999999999999999865322110 11 23599999997542 112222 333
Q ss_pred cCC---------C-CCCHHHHHHHHHHccchh----hHhhCCccccccc-----------------ccCCCCHHHHHHHH
Q 047286 150 YGK---------Q-NASDEHIRPAVQLANAEK----SIDKLPLGLDTVV-----------------ATNAVDAQSERIVQ 198 (632)
Q Consensus 150 ~~~---------~-~~~~~~~~~~~~~~~l~~----~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~ 198 (632)
++. . ....+++.++++..++.+ .+..||+|..+++ +|++||+.+++.+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~ 182 (272)
T PRK15056 103 MGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARII 182 (272)
T ss_pred cccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH
Confidence 211 0 111334567777777654 4567888988877 39999999999999
Q ss_pred HHHHHHh-CCceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhc
Q 047286 199 AAMVKLV-TNQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIE 245 (632)
Q Consensus 199 ~~l~~~~-~~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~ 245 (632)
+.|+++. +++|+|++||+++.+. .||+++++ +|++++.|+++++..
T Consensus 183 ~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~~ 230 (272)
T PRK15056 183 SLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTFT 230 (272)
T ss_pred HHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhccC
Confidence 9999985 4789999999998875 59999777 899999999998753
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=99.82 E-value=4e-20 Score=183.63 Aligned_cols=152 Identities=23% Similarity=0.350 Sum_probs=114.1
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCC---CC------------cHHhhcceEEEcccCccccc-cccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRF---YA------------PEAEQEKIGLVSKEPIFLFC-DFNEGQYI 148 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~---~~------------~~~~r~~i~~v~Q~~~~~~~-~~~~~~~i 148 (632)
.+||++++||+++|+||||||||||+++|.|... .. ....++.++|++|++.+|.. ++.+ |+
T Consensus 25 ~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~e--nl 102 (226)
T cd03234 25 DVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRE--TL 102 (226)
T ss_pred CceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHHH--HH
Confidence 3999999999999999999999999999987643 11 11346789999999877654 5554 55
Q ss_pred ccCC-----CCCC----HHHHHH-HHHHccchh----hHhhCCccccccc-----------------ccCCCCHHHHHHH
Q 047286 149 PYGK-----QNAS----DEHIRP-AVQLANAEK----SIDKLPLGLDTVV-----------------ATNAVDAQSERIV 197 (632)
Q Consensus 149 ~~~~-----~~~~----~~~~~~-~~~~~~l~~----~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i 197 (632)
.+.. .... ..++.+ .++..++.+ .+..||.|..+++ +|++||+.+++.+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~ 182 (226)
T cd03234 103 TYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNL 182 (226)
T ss_pred HHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHH
Confidence 4321 1001 112333 566655543 4567899988877 3899999999999
Q ss_pred HHHHHHHh-CCceEEEEecCc-hHH-hhcCeEEEEeCCeEEEec
Q 047286 198 QAAMVKLV-TNQTVVIVANCL-ITI-RNADCIIMVSKGKIVEKG 238 (632)
Q Consensus 198 ~~~l~~~~-~~~tviiitH~~-~~~-~~aD~i~vl~~G~i~~~g 238 (632)
.+.++++. ++.|+|++||++ ..+ +.||++++|++|++++.|
T Consensus 183 ~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 183 VSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999875 478999999998 355 569999999999998765
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.9e-20 Score=210.45 Aligned_cols=180 Identities=18% Similarity=0.262 Sum_probs=135.3
Q ss_pred HHHHHHHHHHhccCCCCCC----C-C----CcEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC-------------
Q 047286 63 QAAACKMFETIERIPKINP----Y-D----NRFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA------------- 120 (632)
Q Consensus 63 ~~a~~ri~~~~~~~~~~~~----~-~----~~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~------------- 120 (632)
+.+++++..+++.++.... . . +++|+++++||+++|+||||||||||+++|+|.....
T Consensus 55 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~ 134 (659)
T PLN03211 55 KNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKP 134 (659)
T ss_pred cccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEEC
Confidence 4555777777776654321 1 1 2399999999999999999999999999998653221
Q ss_pred cHHhhcceEEEcccCcccc-cccccccccccCC-----CCCCH----HHHHHHHHHccchhh---------HhhCCcccc
Q 047286 121 PEAEQEKIGLVSKEPIFLF-CDFNEGQYIPYGK-----QNASD----EHIRPAVQLANAEKS---------IDKLPLGLD 181 (632)
Q Consensus 121 ~~~~r~~i~~v~Q~~~~~~-~~~~~~~~i~~~~-----~~~~~----~~~~~~~~~~~l~~~---------i~~l~~g~~ 181 (632)
....+++++||+|++.++. .++.+ |+.+.. ...+. ++++++++..++.+. ...+|+|++
T Consensus 135 ~~~~~~~i~yv~Q~~~l~~~lTV~E--~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGer 212 (659)
T PLN03211 135 TKQILKRTGFVTQDDILYPHLTVRE--TLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGER 212 (659)
T ss_pred chhhccceEEECcccccCCcCCHHH--HHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhh
Confidence 1124567999999987664 35555 554421 11222 335667777777542 456999999
Q ss_pred ccc-----------------ccCCCCHHHHHHHHHHHHHHh-CCceEEEEecCchH-H-hhcCeEEEEeCCeEEEecChh
Q 047286 182 TVV-----------------ATNAVDAQSERIVQAAMVKLV-TNQTVVIVANCLIT-I-RNADCIIMVSKGKIVEKGTHD 241 (632)
Q Consensus 182 ~~v-----------------~ts~LD~~~~~~i~~~l~~~~-~~~tviiitH~~~~-~-~~aD~i~vl~~G~i~~~g~~~ 241 (632)
+++ +|++||+.++..+.+.|+++. +++|+|+++|+++. + +.+|++++|++|++++.|+++
T Consensus 213 qRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~ 292 (659)
T PLN03211 213 KRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGS 292 (659)
T ss_pred hHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHH
Confidence 888 399999999999999999986 57999999999973 4 569999999999999999999
Q ss_pred HHh
Q 047286 242 ELI 244 (632)
Q Consensus 242 el~ 244 (632)
++.
T Consensus 293 ~~~ 295 (659)
T PLN03211 293 DAM 295 (659)
T ss_pred HHH
Confidence 885
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.1e-20 Score=177.03 Aligned_cols=159 Identities=22% Similarity=0.337 Sum_probs=121.2
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHH----hhcceEEEcccCccccccccccccccc-----CCC-C
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEA----EQEKIGLVSKEPIFLFCDFNEGQYIPY-----GKQ-N 154 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~----~r~~i~~v~Q~~~~~~~~~~~~~~i~~-----~~~-~ 154 (632)
++||++++||.+||+|+||||||||+|+|.| .+.|+. .+.+++....-..-|.+.++..+|+.+ |.. .
T Consensus 45 disf~i~~Ge~vGiiG~NGaGKSTLlkliaG--i~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G~~~~ 122 (249)
T COG1134 45 DISFEIYKGERVGIIGHNGAGKSTLLKLIAG--IYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILGLTRK 122 (249)
T ss_pred CceEEEeCCCEEEEECCCCCcHHHHHHHHhC--ccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhCccHH
Confidence 4999999999999999999999999999994 455543 344555444433345566665557643 211 1
Q ss_pred CCHHHHHHHHHHccchhh----HhhCCcccccccc-----------------cCCCCHHHHHHHHHHHHHH-hCCceEEE
Q 047286 155 ASDEHIRPAVQLANAEKS----IDKLPLGLDTVVA-----------------TNAVDAQSERIVQAAMVKL-VTNQTVVI 212 (632)
Q Consensus 155 ~~~~~~~~~~~~~~l~~~----i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~~l~~~-~~~~tvii 212 (632)
..++.+++.++.+.+.++ ++.+|.|+..+++ .+..|+.=.+.-.+.+.++ .+++|+|+
T Consensus 123 ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~ 202 (249)
T COG1134 123 EIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVL 202 (249)
T ss_pred HHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 234556677777777665 5678889988875 3567888777777777777 56799999
Q ss_pred EecCchHHhh-cCeEEEEeCCeEEEecChhHHhc
Q 047286 213 VANCLITIRN-ADCIIMVSKGKIVEKGTHDELIE 245 (632)
Q Consensus 213 itH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~ 245 (632)
|||++..++. ||++++|++|+|...|+++++.+
T Consensus 203 VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~ 236 (249)
T COG1134 203 VSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIP 236 (249)
T ss_pred EECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHH
Confidence 9999999976 99999999999999999999864
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.4e-20 Score=182.03 Aligned_cols=152 Identities=16% Similarity=0.299 Sum_probs=112.7
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC--------------cHHhhcceEEEc-ccCcccc-ccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA--------------PEAEQEKIGLVS-KEPIFLF-CDFNEGQYI 148 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~--------------~~~~r~~i~~v~-Q~~~~~~-~~~~~~~~i 148 (632)
.+||++++||+++|+||||||||||+++|+|+.... +...++.++|++ |++.++. .+..+ |+
T Consensus 39 ~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e--~l 116 (236)
T cd03267 39 GISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVID--SF 116 (236)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHHH--HH
Confidence 399999999999999999999999999998653211 112456799997 5454432 23333 44
Q ss_pred ccCC--CCCC----HHHHHHHHHHccchh----hHhhCCccccccc-----------------ccCCCCHHHHHHHHHHH
Q 047286 149 PYGK--QNAS----DEHIRPAVQLANAEK----SIDKLPLGLDTVV-----------------ATNAVDAQSERIVQAAM 201 (632)
Q Consensus 149 ~~~~--~~~~----~~~~~~~~~~~~l~~----~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l 201 (632)
.+.. .... .+++.++++..++.+ .+..||+|..+++ +|++||+.+++.+.+.|
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l 196 (236)
T cd03267 117 YLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFL 196 (236)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHH
Confidence 3221 1111 234456677766643 4677999998877 39999999999999999
Q ss_pred HHHhC--CceEEEEecCchHHhh-cCeEEEEeCCeEEEec
Q 047286 202 VKLVT--NQTVVIVANCLITIRN-ADCIIMVSKGKIVEKG 238 (632)
Q Consensus 202 ~~~~~--~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g 238 (632)
+++.+ +.|+|++||+++.+.. ||++++|++|++++.|
T Consensus 197 ~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 197 KEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred HHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 99853 6899999999998765 9999999999998764
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-20 Score=173.94 Aligned_cols=162 Identities=20% Similarity=0.260 Sum_probs=122.0
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC--------------c--HHhhcceEEEcccCccccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA--------------P--EAEQEKIGLVSKEPIFLFCDFNEGQYI 148 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~--------------~--~~~r~~i~~v~Q~~~~~~~~~~~~~~i 148 (632)
.+||+|++||++++.||||+||||.+.++.|+...+ | ...|..|||+||++.+|-. ++..+|+
T Consensus 22 ~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~-LtV~dNi 100 (243)
T COG1137 22 DVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRK-LTVEDNI 100 (243)
T ss_pred eeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccchHhhc-CcHHHHH
Confidence 499999999999999999999999999987653221 1 1245679999999987753 3444466
Q ss_pred ccCCC----CC----CHHHHHHHHHHccchh----hHhhCCccccccc-----------------ccCCCCHHHHHHHHH
Q 047286 149 PYGKQ----NA----SDEHIRPAVQLANAEK----SIDKLPLGLDTVV-----------------ATNAVDAQSERIVQA 199 (632)
Q Consensus 149 ~~~~~----~~----~~~~~~~~~~~~~l~~----~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~ 199 (632)
....+ +. ..+++.+.++...+.+ .-.+||+|.+.++ +++|+||.+...|++
T Consensus 101 ~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~ 180 (243)
T COG1137 101 MAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQR 180 (243)
T ss_pred HHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHH
Confidence 53211 11 1223446666666543 3457889988766 389999999999999
Q ss_pred HHHHHhC-CceEEEEecCch-HHhhcCeEEEEeCCeEEEecChhHHhcCC
Q 047286 200 AMVKLVT-NQTVVIVANCLI-TIRNADCIIMVSKGKIVEKGTHDELIEDP 247 (632)
Q Consensus 200 ~l~~~~~-~~tviiitH~~~-~~~~aD~i~vl~~G~i~~~g~~~el~~~~ 247 (632)
.++.++. +..|+++-|+.. ++..|||.+++.+|++..+|+++|+.+++
T Consensus 181 iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~ 230 (243)
T COG1137 181 IIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNE 230 (243)
T ss_pred HHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcCh
Confidence 9999975 567777778874 56779999999999999999999998763
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.9e-20 Score=189.98 Aligned_cols=124 Identities=23% Similarity=0.295 Sum_probs=90.5
Q ss_pred cccccEEEeeEEEEEecCCCChHHHHHhhhcCCChhhh--------------------------------cHH------H
Q 047286 497 TVRGDIVFEHTVALVGENGNGKSTVISLAERFHNPEQV--------------------------------IYS------W 538 (632)
Q Consensus 497 ~~~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~~--------------------------------~~~------~ 538 (632)
+++.+|.-++++.++|||||||||++++|.||++|++. +.. +
T Consensus 23 ~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGL 102 (352)
T COG3842 23 DISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGL 102 (352)
T ss_pred cceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhh
Confidence 34556777789999999999999999999999999650 000 0
Q ss_pred H---------H-HHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh---------------------------
Q 047286 539 I---------I-IKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY--------------------------- 581 (632)
Q Consensus 539 ~---------~-~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~--------------------------- 581 (632)
. + ..+.+..... |++..-.....+|||||+||+|||||+..
T Consensus 103 k~~~~~~~~~i~~rv~e~L~lV--~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk 180 (352)
T COG3842 103 KVRKKLKKAEIKARVEEALELV--GLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELK 180 (352)
T ss_pred hhcCCCCHHHHHHHHHHHHHHc--CchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHH
Confidence 0 0 0111111111 23333345678999999999999999433
Q ss_pred ----------hccccc-hhhhhcCCEEEEEeCCeEeeecChHHHhccCCchh
Q 047286 582 ----------CGCGSP-PYHYKNADITSVVKNGVIAEKGRHDALMKITDGTY 622 (632)
Q Consensus 582 ----------~~iahr-l~~~~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y 622 (632)
|.+||. -+.+.-+|||+||++|+|++.||++|++.++...|
T Consensus 181 ~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P~~~f 232 (352)
T COG3842 181 ELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERPATRF 232 (352)
T ss_pred HHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCcchHH
Confidence 788996 56678899999999999999999999998754443
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.9e-20 Score=202.96 Aligned_cols=159 Identities=21% Similarity=0.274 Sum_probs=122.3
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCC-------C--C-c------------HHhhcceEEEcccCcccccccc
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRF-------Y--A-P------------EAEQEKIGLVSKEPIFLFCDFN 143 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~-------~--~-~------------~~~r~~i~~v~Q~~~~~~~~~~ 143 (632)
+||+|++||+++|+||||||||||+++|.|+.. + + . ...+++++|++|++.++. ..+
T Consensus 303 is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~-~~t 381 (520)
T TIGR03269 303 VSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYP-HRT 381 (520)
T ss_pred EEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCC-CCc
Confidence 999999999999999999999999999986521 1 1 0 013457999999986554 233
Q ss_pred cccccccC----CCC-CCHHHHHHHHHHccch---------hhHhhCCcccccccc-----------------cCCCCHH
Q 047286 144 EGQYIPYG----KQN-ASDEHIRPAVQLANAE---------KSIDKLPLGLDTVVA-----------------TNAVDAQ 192 (632)
Q Consensus 144 ~~~~i~~~----~~~-~~~~~~~~~~~~~~l~---------~~i~~l~~g~~~~v~-----------------ts~LD~~ 192 (632)
..+|+.+. ... ...+++.++++.+++. ..+.+||+|++++++ |++||+.
T Consensus 382 v~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~ 461 (520)
T TIGR03269 382 VLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPI 461 (520)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 33355431 111 1123566778887774 456789999998883 9999999
Q ss_pred HHHHHHHHHHHHh-C-CceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhc
Q 047286 193 SERIVQAAMVKLV-T-NQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIE 245 (632)
Q Consensus 193 ~~~~i~~~l~~~~-~-~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~ 245 (632)
+++.+.+.|+++. + +.|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 462 ~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 462 TKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVE 517 (520)
T ss_pred HHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999885 3 6899999999998865 99999999999999999888753
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.7e-19 Score=182.50 Aligned_cols=161 Identities=16% Similarity=0.240 Sum_probs=118.2
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHH--hhcceEEEcccCcccccccccccccccCC--CCCCHHH-
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEA--EQEKIGLVSKEPIFLFCDFNEGQYIPYGK--QNASDEH- 159 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~--~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~--~~~~~~~- 159 (632)
.+||++++|++++|+||||||||||+++|+|+....... +...+++++|++.++. ..+..+|+.+.. ...+.++
T Consensus 42 ~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~~~~~~~~~~-~~tv~enl~~~~~~~~~~~~~~ 120 (264)
T PRK13546 42 DISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSG-QLTGIENIEFKMLCMGFKRKEI 120 (264)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeEEecccCCCC-CCcHHHHHHHHHHHcCCCHHHH
Confidence 399999999999999999999999999999653322111 2234677777765432 222223554321 1122222
Q ss_pred ---HHHHHHHccchh----hHhhCCccccccc-----------------ccCCCCHHHHHHHHHHHHHHh-CCceEEEEe
Q 047286 160 ---IRPAVQLANAEK----SIDKLPLGLDTVV-----------------ATNAVDAQSERIVQAAMVKLV-TNQTVVIVA 214 (632)
Q Consensus 160 ---~~~~~~~~~l~~----~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l~~~~-~~~tviiit 214 (632)
+.++++..++.+ .+..||.|+.+++ +|++||+.+++.+.+.+.++. .++|+|++|
T Consensus 121 ~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiis 200 (264)
T PRK13546 121 KAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVS 200 (264)
T ss_pred HHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEc
Confidence 344566656544 4567888988777 389999999999999998875 478999999
Q ss_pred cCchHHhh-cCeEEEEeCCeEEEecChhHHhcC
Q 047286 215 NCLITIRN-ADCIIMVSKGKIVEKGTHDELIED 246 (632)
Q Consensus 215 H~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~ 246 (632)
|++..+.. ||+|++|++|++++.|+++++...
T Consensus 201 H~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~~ 233 (264)
T PRK13546 201 HNLGQVRQFCTKIAWIEGGKLKDYGELDDVLPK 233 (264)
T ss_pred CCHHHHHHHcCEEEEEECCEEEEeCCHHHHHHH
Confidence 99998865 999999999999999999998765
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.5e-19 Score=178.75 Aligned_cols=148 Identities=26% Similarity=0.317 Sum_probs=114.3
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC---------------cH---HhhcceEEEcccCcccc-cccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA---------------PE---AEQEKIGLVSKEPIFLF-CDFNEG 145 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~---------------~~---~~r~~i~~v~Q~~~~~~-~~~~~~ 145 (632)
.+||++++|++++|+||||||||||+++|.|..... +. ..++.++|++|++.+|. .++.+
T Consensus 23 ~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~- 101 (220)
T TIGR02982 23 DINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQ- 101 (220)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCCHHH-
Confidence 399999999999999999999999999998653210 00 23568999999997765 35554
Q ss_pred cccccCC---CCCC----HHHHHHHHHHccchh----hHhhCCccccccc-----------------ccCCCCHHHHHHH
Q 047286 146 QYIPYGK---QNAS----DEHIRPAVQLANAEK----SIDKLPLGLDTVV-----------------ATNAVDAQSERIV 197 (632)
Q Consensus 146 ~~i~~~~---~~~~----~~~~~~~~~~~~l~~----~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i 197 (632)
|+.+.. .... .+++.++++.+++.+ .+.++|.|..+++ +|++||+.+++.+
T Consensus 102 -n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l 180 (220)
T TIGR02982 102 -NVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDV 180 (220)
T ss_pred -HHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHH
Confidence 554321 1111 235677778777654 4567888888777 3899999999999
Q ss_pred HHHHHHHhC--CceEEEEecCchHHhhcCeEEEEeCCeE
Q 047286 198 QAAMVKLVT--NQTVVIVANCLITIRNADCIIMVSKGKI 234 (632)
Q Consensus 198 ~~~l~~~~~--~~tviiitH~~~~~~~aD~i~vl~~G~i 234 (632)
.+.|+++.+ ++|+|++||+++....||+|++|++|++
T Consensus 181 ~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 181 VELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 999998853 7899999999987777999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.6e-20 Score=176.38 Aligned_cols=133 Identities=21% Similarity=0.311 Sum_probs=103.5
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCc-------------HHhhcceEEEcccCccccc-cccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAP-------------EAEQEKIGLVSKEPIFLFC-DFNEGQYIPY 150 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~-------------~~~r~~i~~v~Q~~~~~~~-~~~~~~~i~~ 150 (632)
.+||++++|++++|+||||||||||+++|.|.....+ ...++.++|++|++.++.. ++.+ |+.+
T Consensus 25 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~--~l~~ 102 (192)
T cd03232 25 NISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVRE--ALRF 102 (192)
T ss_pred ccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHH--HHHH
Confidence 3999999999999999999999999999997532111 2245679999999865543 4444 4433
Q ss_pred CCCCCCHHHHHHHHHHccchhhHhhCCccccccc-----------------ccCCCCHHHHHHHHHHHHHHhC-CceEEE
Q 047286 151 GKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV-----------------ATNAVDAQSERIVQAAMVKLVT-NQTVVI 212 (632)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l~~~~~-~~tvii 212 (632)
+. . ...||+|..+++ +|++||+.+++.+.+.++++.+ ++|+|+
T Consensus 103 ~~----------~---------~~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii 163 (192)
T cd03232 103 SA----------L---------LRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILC 163 (192)
T ss_pred HH----------H---------HhcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 21 0 017888887777 3899999999999999998854 789999
Q ss_pred EecCchH-H-hhcCeEEEEeC-CeEEEec
Q 047286 213 VANCLIT-I-RNADCIIMVSK-GKIVEKG 238 (632)
Q Consensus 213 itH~~~~-~-~~aD~i~vl~~-G~i~~~g 238 (632)
+||+++. + ..||++++|++ |++++.|
T Consensus 164 vtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 164 TIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred EEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 9999973 4 56999999999 9998765
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-19 Score=171.60 Aligned_cols=120 Identities=33% Similarity=0.502 Sum_probs=95.9
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC---------------cHHhhcceEEEcccCcccccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA---------------PEAEQEKIGLVSKEPIFLFCDFNEGQYIP 149 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~---------------~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~ 149 (632)
.+||++++|++++|+||||||||||+++|.|+.... +...++.++|++|++.+|..++.+ |+
T Consensus 20 ~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e--~l- 96 (171)
T cd03228 20 DVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRE--NI- 96 (171)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHH--Hh-
Confidence 399999999999999999999999999998653211 123456799999998766554443 43
Q ss_pred cCCCCCCHHHHHHHHHHccchhhHhhCCccccccc-----------------ccCCCCHHHHHHHHHHHHHHhCCceEEE
Q 047286 150 YGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV-----------------ATNAVDAQSERIVQAAMVKLVTNQTVVI 212 (632)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l~~~~~~~tvii 212 (632)
||.|..+++ +|++||+.+++.+.+.++++.+++|+|+
T Consensus 97 --------------------------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~ 150 (171)
T cd03228 97 --------------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIV 150 (171)
T ss_pred --------------------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 333333332 4899999999999999999877789999
Q ss_pred EecCchHHhhcCeEEEEeCCe
Q 047286 213 VANCLITIRNADCIIMVSKGK 233 (632)
Q Consensus 213 itH~~~~~~~aD~i~vl~~G~ 233 (632)
+||+++.++.||++++|++|+
T Consensus 151 ~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 151 IAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EecCHHHHHhCCEEEEEcCCC
Confidence 999999987799999999985
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.1e-19 Score=181.54 Aligned_cols=158 Identities=18% Similarity=0.308 Sum_probs=116.0
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCc-----------------HHhhc-ceEEEcccCccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAP-----------------EAEQE-KIGLVSKEPIFLFCDFNEGQ 146 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~-----------------~~~r~-~i~~v~Q~~~~~~~~~~~~~ 146 (632)
.+||++++||+++|+||||||||||+++|.|+..+.| ...++ .++|++|++.++... ...+
T Consensus 25 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~-~~~~ 103 (252)
T CHL00131 25 GLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPGV-SNAD 103 (252)
T ss_pred cceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEeccccccccc-cHHH
Confidence 3999999999999999999999999999997521111 11122 488999998755432 2222
Q ss_pred ccccCC---------CCCC----HHHHHHHHHHccchh-----hHh-hCCccccccc-----------------ccCCCC
Q 047286 147 YIPYGK---------QNAS----DEHIRPAVQLANAEK-----SID-KLPLGLDTVV-----------------ATNAVD 190 (632)
Q Consensus 147 ~i~~~~---------~~~~----~~~~~~~~~~~~l~~-----~i~-~l~~g~~~~v-----------------~ts~LD 190 (632)
++.+.. .+.. .+++.++++.+++.+ ... .||+|..+++ +|++||
T Consensus 104 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD 183 (252)
T CHL00131 104 FLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLD 183 (252)
T ss_pred HHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCC
Confidence 332210 0111 234566777777642 233 4888988877 399999
Q ss_pred HHHHHHHHHHHHHHh-CCceEEEEecCchHHhh--cCeEEEEeCCeEEEecChhHH
Q 047286 191 AQSERIVQAAMVKLV-TNQTVVIVANCLITIRN--ADCIIMVSKGKIVEKGTHDEL 243 (632)
Q Consensus 191 ~~~~~~i~~~l~~~~-~~~tviiitH~~~~~~~--aD~i~vl~~G~i~~~g~~~el 243 (632)
+.+++.+.+.|+++. ++.|+|++||+++.+.. ||++++|++|++++.|+++.+
T Consensus 184 ~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 239 (252)
T CHL00131 184 IDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAELA 239 (252)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecChhhh
Confidence 999999999999885 47899999999998864 899999999999999988743
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.2e-19 Score=174.62 Aligned_cols=146 Identities=20% Similarity=0.298 Sum_probs=109.2
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC----------c---------HHhhcceEEEcccCcccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA----------P---------EAEQEKIGLVSKEPIFLFCDFNEG 145 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~----------~---------~~~r~~i~~v~Q~~~~~~~~~~~~ 145 (632)
.+||++++|++++|+||||||||||+++|+|..... . ...++.++|++|++.++..++.+
T Consensus 19 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~t~~~- 97 (218)
T cd03290 19 NINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNATVEE- 97 (218)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcCCCccccccHHH-
Confidence 399999999999999999999999999998653211 0 11345799999999877655555
Q ss_pred cccccCCCCCCHHHHHHHHHHccchhhH---------------hhCCccccccc-----------------ccCCCCHHH
Q 047286 146 QYIPYGKQNASDEHIRPAVQLANAEKSI---------------DKLPLGLDTVV-----------------ATNAVDAQS 193 (632)
Q Consensus 146 ~~i~~~~~~~~~~~~~~~~~~~~l~~~i---------------~~l~~g~~~~v-----------------~ts~LD~~~ 193 (632)
|+.+... ...++..++++.+++.+.+ ..+|.|+.+++ +|++||+.+
T Consensus 98 -nl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~ 175 (218)
T cd03290 98 -NITFGSP-FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHL 175 (218)
T ss_pred -HHhhcCc-CCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHH
Confidence 6665432 2344555666666654433 45666666665 389999999
Q ss_pred HHHHHH--HHHHHhC-CceEEEEecCchHHhhcCeEEEEeCCe
Q 047286 194 ERIVQA--AMVKLVT-NQTVVIVANCLITIRNADCIIMVSKGK 233 (632)
Q Consensus 194 ~~~i~~--~l~~~~~-~~tviiitH~~~~~~~aD~i~vl~~G~ 233 (632)
++.+.+ .++.+.+ +.|+|++||+.+.+..||++++|++|.
T Consensus 176 ~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 176 SDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 999988 5555543 689999999999888899999999884
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.8e-19 Score=175.29 Aligned_cols=135 Identities=21% Similarity=0.283 Sum_probs=103.1
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCc-----------------HH-hhcceEEEcccCccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAP-----------------EA-EQEKIGLVSKEPIFLFCDFNEGQ 146 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~-----------------~~-~r~~i~~v~Q~~~~~~~~~~~~~ 146 (632)
.+||++++||+++|+||||||||||+++|.|...+.| .. .+..++|++|++.++...... +
T Consensus 18 ~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~-~ 96 (200)
T cd03217 18 GVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNA-D 96 (200)
T ss_pred ccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHH-H
Confidence 3899999999999999999999999999997621111 11 234599999998655432111 1
Q ss_pred ccccCCCCCCHHHHHHHHHHccchhhHhhCCccccccc-----------------ccCCCCHHHHHHHHHHHHHHhC-Cc
Q 047286 147 YIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV-----------------ATNAVDAQSERIVQAAMVKLVT-NQ 208 (632)
Q Consensus 147 ~i~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l~~~~~-~~ 208 (632)
++ ......||.|+.+++ +|++||+.+++.+.+.|+++.+ ++
T Consensus 97 ~l---------------------~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~ 155 (200)
T cd03217 97 FL---------------------RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGK 155 (200)
T ss_pred HH---------------------hhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCC
Confidence 11 111245677776655 3999999999999999999864 78
Q ss_pred eEEEEecCchHHh--hcCeEEEEeCCeEEEecChh
Q 047286 209 TVVIVANCLITIR--NADCIIMVSKGKIVEKGTHD 241 (632)
Q Consensus 209 tviiitH~~~~~~--~aD~i~vl~~G~i~~~g~~~ 241 (632)
|+|++||+++.+. .||++++|++|++++.|+.+
T Consensus 156 tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~~~~ 190 (200)
T cd03217 156 SVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDKE 190 (200)
T ss_pred EEEEEecCHHHHHHhhCCEEEEEECCEEEEEccHH
Confidence 9999999999887 69999999999999998443
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.8e-19 Score=200.04 Aligned_cols=157 Identities=14% Similarity=0.220 Sum_probs=120.1
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC-Cc----------------HHhhcceEEEcccCc---ccc-cccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY-AP----------------EAEQEKIGLVSKEPI---FLF-CDFN 143 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~-~~----------------~~~r~~i~~v~Q~~~---~~~-~~~~ 143 (632)
.+||+|++||+++|+||||||||||+++|+|+..+ .. ...+..++|++|++. ++. .++.
T Consensus 280 ~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~ 359 (506)
T PRK13549 280 DVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVG 359 (506)
T ss_pred ceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHH
Confidence 39999999999999999999999999999976321 00 112456999999962 332 2333
Q ss_pred cccccccCC----C-----CC--CHHHHHHHHHHccch-----hhHhhCCccccccc-----------------ccCCCC
Q 047286 144 EGQYIPYGK----Q-----NA--SDEHIRPAVQLANAE-----KSIDKLPLGLDTVV-----------------ATNAVD 190 (632)
Q Consensus 144 ~~~~i~~~~----~-----~~--~~~~~~~~~~~~~l~-----~~i~~l~~g~~~~v-----------------~ts~LD 190 (632)
+ |+.++. . .. ..+++.++++.+++. ..+.+||+|+++++ +|++||
T Consensus 360 e--~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD 437 (506)
T PRK13549 360 K--NITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGID 437 (506)
T ss_pred H--HhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcC
Confidence 3 454321 0 00 123466777777763 34678999999888 399999
Q ss_pred HHHHHHHHHHHHHHh-CCceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHH
Q 047286 191 AQSERIVQAAMVKLV-TNQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDEL 243 (632)
Q Consensus 191 ~~~~~~i~~~l~~~~-~~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el 243 (632)
+.+++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|+++..|+.+++
T Consensus 438 ~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 492 (506)
T PRK13549 438 VGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHNL 492 (506)
T ss_pred HhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEeccccC
Confidence 999999999999885 47899999999998865 999999999999999988765
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-19 Score=174.95 Aligned_cols=111 Identities=30% Similarity=0.323 Sum_probs=78.4
Q ss_pred ccccEEEeeEEEEEecCCCChHHHHHhhhcCCChhh------------hcHHHH--HH-----------------HHHHH
Q 047286 498 VRGDIVFEHTVALVGENGNGKSTVISLAERFHNPEQ------------VIYSWI--II-----------------KCTNF 546 (632)
Q Consensus 498 ~~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~------------~~~~~~--~~-----------------~~~~~ 546 (632)
..-+|+-+++|||+||||||||||+++|.++-.|++ +....+ .+ .+.|.
T Consensus 24 v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~EN 103 (226)
T COG1136 24 VNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLEN 103 (226)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHH
Confidence 334666677999999999999999999999988854 111000 00 00011
Q ss_pred ------HhcCCC--------------ccCcccc-cCCCCCChHHHHHHHHHHHHhh------------------------
Q 047286 547 ------IASLPQ--------------GSDLNVG-ERGLQLSGGLKQRIARTRARNY------------------------ 581 (632)
Q Consensus 547 ------i~~lp~--------------g~dt~vg-e~G~~LSgGQrQRiaiARA~~~------------------------ 581 (632)
+...+. |+....- ....+||||||||+|||||+..
T Consensus 104 v~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ 183 (226)
T COG1136 104 VELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLE 183 (226)
T ss_pred HHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHH
Confidence 111111 4443333 4567899999999999999654
Q ss_pred -------------hccccchhhhhcCCEEEEEeCCeEeee
Q 047286 582 -------------CGCGSPPYHYKNADITSVVKNGVIAEK 608 (632)
Q Consensus 582 -------------~~iahrl~~~~~aD~I~vl~~G~ive~ 608 (632)
+++||.+.....|||++.|+||++.+.
T Consensus 184 ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~~ 223 (226)
T COG1136 184 LLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEEE 223 (226)
T ss_pred HHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeeec
Confidence 789999999999999999999996543
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.5e-19 Score=200.58 Aligned_cols=156 Identities=20% Similarity=0.275 Sum_probs=119.7
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC-------C--------c-HHhhcceEEEcccCc---ccc-cccccc
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY-------A--------P-EAEQEKIGLVSKEPI---FLF-CDFNEG 145 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~-------~--------~-~~~r~~i~~v~Q~~~---~~~-~~~~~~ 145 (632)
+||+|++||+++|+||||||||||+++|+|.... + + ...++.++|++|++. ++. .++.+
T Consensus 272 isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e- 350 (501)
T PRK11288 272 ISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVAD- 350 (501)
T ss_pred eeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHH-
Confidence 9999999999999999999999999999865311 0 0 113467999999963 333 33433
Q ss_pred cccccCCC----------C--CCHHHHHHHHHHccch-----hhHhhCCccccccc-----------------ccCCCCH
Q 047286 146 QYIPYGKQ----------N--ASDEHIRPAVQLANAE-----KSIDKLPLGLDTVV-----------------ATNAVDA 191 (632)
Q Consensus 146 ~~i~~~~~----------~--~~~~~~~~~~~~~~l~-----~~i~~l~~g~~~~v-----------------~ts~LD~ 191 (632)
|+.++.. . ...+++.++++..++. ..+..||+|+++++ +|++||+
T Consensus 351 -~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~ 429 (501)
T PRK11288 351 -NINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDV 429 (501)
T ss_pred -HhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCH
Confidence 4443211 0 0123466777777762 34778999999888 3999999
Q ss_pred HHHHHHHHHHHHHhC-CceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHH
Q 047286 192 QSERIVQAAMVKLVT-NQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDEL 243 (632)
Q Consensus 192 ~~~~~i~~~l~~~~~-~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el 243 (632)
.+++.+++.|.++.+ +.|+|++||+++.+.. ||++++|++|++++.|+.++.
T Consensus 430 ~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 483 (501)
T PRK11288 430 GAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQA 483 (501)
T ss_pred hHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEccccC
Confidence 999999999999854 7899999999998865 999999999999999988765
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=99.80 E-value=2e-19 Score=179.97 Aligned_cols=130 Identities=37% Similarity=0.446 Sum_probs=105.2
Q ss_pred ccccEEEeeEEEEEecCCCChHHHHHhhhcCCChhhh------------cHHH---------------------------
Q 047286 498 VRGDIVFEHTVALVGENGNGKSTVISLAERFHNPEQV------------IYSW--------------------------- 538 (632)
Q Consensus 498 ~~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~~------------~~~~--------------------------- 538 (632)
..-+|.-++++||+||+|||||||+++|.|+++|++. ....
T Consensus 20 i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~ 99 (236)
T cd03253 20 VSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGR 99 (236)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhcchHHHHHhhcC
Confidence 3345555679999999999999999999999876430 0000
Q ss_pred ------H------HHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh-------------------------
Q 047286 539 ------I------IIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY------------------------- 581 (632)
Q Consensus 539 ------~------~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~------------------------- 581 (632)
. ...+.+++..+|.|+++.+..+..+||||||||++||||+..
T Consensus 100 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~ 179 (236)
T cd03253 100 PDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAA 179 (236)
T ss_pred CCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 0 002346677889999999999999999999999999999554
Q ss_pred ----------hccccchhhhhcCCEEEEEeCCeEeeecChHHHhccCCchhHHHHHh
Q 047286 582 ----------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKITDGTYASLTAL 628 (632)
Q Consensus 582 ----------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~~~ 628 (632)
++++|.+..+..||++++|++|++++.|+.+++... .+.|+.++..
T Consensus 180 l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~-~~~~~~~~~~ 235 (236)
T cd03253 180 LRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAK-GGLYAEMWKA 235 (236)
T ss_pred HHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc-ccHHHHHHhc
Confidence 677999999999999999999999999999999986 7778777653
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-19 Score=174.60 Aligned_cols=133 Identities=23% Similarity=0.336 Sum_probs=102.7
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCC--CCCc------------HHhhcceEEEcccCccccc-ccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFR--FYAP------------EAEQEKIGLVSKEPIFLFC-DFNEGQYIP 149 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~--~~~~------------~~~r~~i~~v~Q~~~~~~~-~~~~~~~i~ 149 (632)
.+||++++||+++|+||||||||||+++|.|+. .... ...++.++|++|++.++.. ++.+ |+.
T Consensus 27 ~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~--~i~ 104 (194)
T cd03213 27 NVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRE--TLM 104 (194)
T ss_pred cceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHH--HHH
Confidence 399999999999999999999999999999764 2211 1246779999999865542 4433 443
Q ss_pred cCCCCCCHHHHHHHHHHccchhhHhhCCccccccc-----------------ccCCCCHHHHHHHHHHHHHHh-CCceEE
Q 047286 150 YGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV-----------------ATNAVDAQSERIVQAAMVKLV-TNQTVV 211 (632)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l~~~~-~~~tvi 211 (632)
+... ...||.|..+++ +|++||+.+++.+.+.|+++. +++|+|
T Consensus 105 ~~~~-------------------~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tii 165 (194)
T cd03213 105 FAAK-------------------LRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTII 165 (194)
T ss_pred HHHH-------------------hccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 2110 116777777666 389999999999999999885 478999
Q ss_pred EEecCch-HHh-hcCeEEEEeCCeEEEec
Q 047286 212 IVANCLI-TIR-NADCIIMVSKGKIVEKG 238 (632)
Q Consensus 212 iitH~~~-~~~-~aD~i~vl~~G~i~~~g 238 (632)
++||+++ .+. .||++++|++|++++.|
T Consensus 166 i~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 166 CSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred EEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 9999996 454 59999999999998654
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.4e-19 Score=179.24 Aligned_cols=121 Identities=25% Similarity=0.333 Sum_probs=98.9
Q ss_pred eeEEEEEecCCCChHHHHHhhhcCCChhhh--------------------------cH-----H---HH---HHHHHHHH
Q 047286 505 EHTVALVGENGNGKSTVISLAERFHNPEQV--------------------------IY-----S---WI---IIKCTNFI 547 (632)
Q Consensus 505 ~~~vaIVG~SGsGKSTL~~ll~r~y~~~~~--------------------------~~-----~---~~---~~~~~~~i 547 (632)
++.+||+|++|||||||+++|+|+++|++. .. . .. ..++.+++
T Consensus 63 Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l 142 (282)
T cd03291 63 GEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDI 142 (282)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCcccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHH
Confidence 348999999999999999999999887430 00 0 00 01345677
Q ss_pred hcCCCccCcccccCCCCCChHHHHHHHHHHHHhh------------------------------------hccccchhhh
Q 047286 548 ASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY------------------------------------CGCGSPPYHY 591 (632)
Q Consensus 548 ~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~------------------------------------~~iahrl~~~ 591 (632)
..+|.++++.+++.+.+||||||||++||||+.. +++||.+..+
T Consensus 143 ~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~ 222 (282)
T cd03291 143 TKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHL 222 (282)
T ss_pred HhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHH
Confidence 7889999999999999999999999999999544 6789999999
Q ss_pred hcCCEEEEEeCCeEeeecChHHHhccCCchhHHHH
Q 047286 592 KNADITSVVKNGVIAEKGRHDALMKITDGTYASLT 626 (632)
Q Consensus 592 ~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~ 626 (632)
..||+|++|++|++++.|+++++.+. ...|...+
T Consensus 223 ~~~d~i~~l~~G~i~~~g~~~~~~~~-~~~~~~~~ 256 (282)
T cd03291 223 KKADKILILHEGSSYFYGTFSELQSL-RPDFSSKL 256 (282)
T ss_pred HhCCEEEEEECCEEEEECCHHHHHhc-chHHHHHH
Confidence 99999999999999999999999875 55666544
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.3e-19 Score=174.73 Aligned_cols=139 Identities=18% Similarity=0.232 Sum_probs=105.4
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCC---CCc--------------HHhhcceEEEcccCccccc-cccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRF---YAP--------------EAEQEKIGLVSKEPIFLFC-DFNEGQ 146 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~---~~~--------------~~~r~~i~~v~Q~~~~~~~-~~~~~~ 146 (632)
.+||++++||+++|+||||||||||+++|.|+.. ... ...++.++|++|++.++.. ++.+
T Consensus 25 ~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~-- 102 (202)
T cd03233 25 DFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRE-- 102 (202)
T ss_pred eEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcHHH--
Confidence 3999999999999999999999999999987643 100 1235679999999866543 5554
Q ss_pred ccccCCCCCCHHHHHHHHHHccchhhHhhCCccccccc-----------------ccCCCCHHHHHHHHHHHHHHhC--C
Q 047286 147 YIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV-----------------ATNAVDAQSERIVQAAMVKLVT--N 207 (632)
Q Consensus 147 ~i~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l~~~~~--~ 207 (632)
|+.+.... ..+..+..||.|..+++ +|++||+.+++.+.+.++++.+ +
T Consensus 103 ~l~~~~~~-------------~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~ 169 (202)
T cd03233 103 TLDFALRC-------------KGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLK 169 (202)
T ss_pred HHhhhhhh-------------ccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCC
Confidence 55443210 04566788999988777 3999999999999999999854 4
Q ss_pred ceEEEEec-CchHH-hhcCeEEEEeCCeEEEec
Q 047286 208 QTVVIVAN-CLITI-RNADCIIMVSKGKIVEKG 238 (632)
Q Consensus 208 ~tviiitH-~~~~~-~~aD~i~vl~~G~i~~~g 238 (632)
.|+|+++| +.+.+ +.||++++|++|++++.|
T Consensus 170 ~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 170 TTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred CEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 57666655 45565 459999999999998754
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.5e-19 Score=187.06 Aligned_cols=126 Identities=24% Similarity=0.257 Sum_probs=90.5
Q ss_pred ccEEEeeEEEEEecCCCChHHHHHhhhcCCChhh------------hcHHH---H----------------------HH-
Q 047286 500 GDIVFEHTVALVGENGNGKSTVISLAERFHNPEQ------------VIYSW---I----------------------II- 541 (632)
Q Consensus 500 g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~------------~~~~~---~----------------------~~- 541 (632)
-+|.-++++||+||||||||||+++|.|+++|++ +.... . +.
T Consensus 26 l~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~ 105 (343)
T TIGR02314 26 LHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVAL 105 (343)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHH
Confidence 3455556899999999999999999999998853 11100 0 00
Q ss_pred --------------HHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh--------------------------
Q 047286 542 --------------KCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY-------------------------- 581 (632)
Q Consensus 542 --------------~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~-------------------------- 581 (632)
.+.+.+..+ |+.........+||||||||++||||+..
T Consensus 106 ~~~~~~~~~~~~~~~v~e~l~~v--gL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL 183 (343)
T TIGR02314 106 PLELDNTPKDEIKRKVTELLALV--GLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELL 183 (343)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 011222221 34334445667899999999999999544
Q ss_pred -----------hccccchhhhh-cCCEEEEEeCCeEeeecChHHHhccCCc-hhHHHHH
Q 047286 582 -----------CGCGSPPYHYK-NADITSVVKNGVIAEKGRHDALMKITDG-TYASLTA 627 (632)
Q Consensus 582 -----------~~iahrl~~~~-~aD~I~vl~~G~ive~G~h~eL~~~~~g-~y~~l~~ 627 (632)
+++||.++.++ .||+|++|++|+|+|.|++++++..+.. .++.++.
T Consensus 184 ~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~~p~~~~~~~~~~ 242 (343)
T TIGR02314 184 KEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHPKTPLAQKFIR 242 (343)
T ss_pred HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHcCCCcHHHHHHHh
Confidence 78899999985 5999999999999999999999875333 3445543
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.7e-19 Score=169.92 Aligned_cols=122 Identities=23% Similarity=0.393 Sum_probs=96.4
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC--------------cHHhhcceEEEcccCccccc-ccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA--------------PEAEQEKIGLVSKEPIFLFC-DFNEGQYIP 149 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~--------------~~~~r~~i~~v~Q~~~~~~~-~~~~~~~i~ 149 (632)
.+||++++||+++|+||||||||||+++|.|..... +...++.++|++|++.++.. ++.+ |+.
T Consensus 18 ~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~--~~~ 95 (173)
T cd03230 18 DISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRE--NLK 95 (173)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHH--Hhh
Confidence 399999999999999999999999999998652210 12346789999999876543 3333 332
Q ss_pred cCCCCCCHHHHHHHHHHccchhhHhhCCccccccc-----------------ccCCCCHHHHHHHHHHHHHHh-CCceEE
Q 047286 150 YGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV-----------------ATNAVDAQSERIVQAAMVKLV-TNQTVV 211 (632)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l~~~~-~~~tvi 211 (632)
||.|..+++ +|++||+.+++.+.+.|+++. ++.|+|
T Consensus 96 --------------------------LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii 149 (173)
T cd03230 96 --------------------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTIL 149 (173)
T ss_pred --------------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 455554444 499999999999999999985 468999
Q ss_pred EEecCchHHh-hcCeEEEEeCCeE
Q 047286 212 IVANCLITIR-NADCIIMVSKGKI 234 (632)
Q Consensus 212 iitH~~~~~~-~aD~i~vl~~G~i 234 (632)
++||+.+.+. .||++++|++|++
T Consensus 150 i~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 150 LSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred EECCCHHHHHHhCCEEEEEeCCCC
Confidence 9999999887 5999999999974
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.6e-19 Score=186.81 Aligned_cols=152 Identities=24% Similarity=0.368 Sum_probs=116.9
Q ss_pred EEcCCCchHHHHHHHHHhCCCCC-------------cHHhhcceEEEcccCccccc-ccccccccccCCC--CCC----H
Q 047286 98 LVGQSGSGKSTVINLVESFRFYA-------------PEAEQEKIGLVSKEPIFLFC-DFNEGQYIPYGKQ--NAS----D 157 (632)
Q Consensus 98 ivG~sGsGKSTLl~ll~~~~~~~-------------~~~~r~~i~~v~Q~~~~~~~-~~~~~~~i~~~~~--~~~----~ 157 (632)
|+||||||||||+++|.|+.... ....+++++|++|++.+|.. ++.+ |+.++.. ... .
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~e--nl~~~~~~~~~~~~~~~ 78 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEE--NVAFGLKMRKVPRAEIK 78 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHH--HHHHHHhhcCCCHHHHH
Confidence 68999999999999998653211 01235679999999876643 5544 6665421 111 2
Q ss_pred HHHHHHHHHccchh----hHhhCCcccccccc-----------------cCCCCHHHHHHHHHHHHHHhC--CceEEEEe
Q 047286 158 EHIRPAVQLANAEK----SIDKLPLGLDTVVA-----------------TNAVDAQSERIVQAAMVKLVT--NQTVVIVA 214 (632)
Q Consensus 158 ~~~~~~~~~~~l~~----~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~~l~~~~~--~~tviiit 214 (632)
+++.++++..++.+ ...+||+|++++++ |++||+.+++.+.+.|+++.+ +.|+|++|
T Consensus 79 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivT 158 (325)
T TIGR01187 79 PRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVT 158 (325)
T ss_pred HHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 45677788877644 45678899988883 999999999999999998853 78999999
Q ss_pred cCchHHhh-cCeEEEEeCCeEEEecChhHHhcCCCcHH
Q 047286 215 NCLITIRN-ADCIIMVSKGKIVEKGTHDELIEDPEGAY 251 (632)
Q Consensus 215 H~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~~~~~~ 251 (632)
|+++.+.. ||+|++|++|++++.|+++++.+.+...+
T Consensus 159 Hd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~~~~~~ 196 (325)
T TIGR01187 159 HDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEPANLF 196 (325)
T ss_pred CCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCcHH
Confidence 99988764 99999999999999999999987655444
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.9e-19 Score=172.55 Aligned_cols=126 Identities=21% Similarity=0.309 Sum_probs=96.4
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC----------------cHHhhcceEEEcccCc---ccc-ccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA----------------PEAEQEKIGLVSKEPI---FLF-CDFNE 144 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~----------------~~~~r~~i~~v~Q~~~---~~~-~~~~~ 144 (632)
.+||++++|++++|+||||||||||+++|.|..... ....++.++|++|++. ++. .++.+
T Consensus 18 ~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e 97 (182)
T cd03215 18 DVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAE 97 (182)
T ss_pred ceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHH
Confidence 389999999999999999999999999998653211 1124567999999852 222 23333
Q ss_pred ccccccCCCCCCHHHHHHHHHHccchhhHhhCCccccccc-----------------ccCCCCHHHHHHHHHHHHHHh-C
Q 047286 145 GQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV-----------------ATNAVDAQSERIVQAAMVKLV-T 206 (632)
Q Consensus 145 ~~~i~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l~~~~-~ 206 (632)
|+.+... ||.|+.+++ +|++||+.+++.+.+.++++. +
T Consensus 98 --~l~~~~~----------------------LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~ 153 (182)
T cd03215 98 --NIALSSL----------------------LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADA 153 (182)
T ss_pred --HHHHHhh----------------------cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHC
Confidence 4433210 666666555 389999999999999999985 4
Q ss_pred CceEEEEecCchHHhh-cCeEEEEeCCeE
Q 047286 207 NQTVVIVANCLITIRN-ADCIIMVSKGKI 234 (632)
Q Consensus 207 ~~tviiitH~~~~~~~-aD~i~vl~~G~i 234 (632)
+.|+|++||+++.+.. ||++++|++|++
T Consensus 154 ~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 154 GKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred CCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 7899999999988866 999999999974
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.2e-19 Score=199.21 Aligned_cols=157 Identities=15% Similarity=0.277 Sum_probs=119.9
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC---------------c-HHhhcceEEEcccCc---ccc-ccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA---------------P-EAEQEKIGLVSKEPI---FLF-CDFNE 144 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~---------------~-~~~r~~i~~v~Q~~~---~~~-~~~~~ 144 (632)
.+||+|++||+++|+||||||||||+++|.|+...+ + ...+++++|++|++. ++. .++.+
T Consensus 270 ~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e 349 (501)
T PRK10762 270 DVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKE 349 (501)
T ss_pred cceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHH
Confidence 399999999999999999999999999998653211 1 123567999999972 332 23433
Q ss_pred ccccccCC-----C-----C--CCHHHHHHHHHHccch-----hhHhhCCccccccc-----------------ccCCCC
Q 047286 145 GQYIPYGK-----Q-----N--ASDEHIRPAVQLANAE-----KSIDKLPLGLDTVV-----------------ATNAVD 190 (632)
Q Consensus 145 ~~~i~~~~-----~-----~--~~~~~~~~~~~~~~l~-----~~i~~l~~g~~~~v-----------------~ts~LD 190 (632)
|+.++. . . ...+++.++++.+++. ..+..||+|+++++ +|++||
T Consensus 350 --~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD 427 (501)
T PRK10762 350 --NMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVD 427 (501)
T ss_pred --HhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCC
Confidence 444321 0 0 1123466777777662 35778999999888 399999
Q ss_pred HHHHHHHHHHHHHHh-CCceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHH
Q 047286 191 AQSERIVQAAMVKLV-TNQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDEL 243 (632)
Q Consensus 191 ~~~~~~i~~~l~~~~-~~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el 243 (632)
+.+++.+.+.|+++. ++.|+|++||+++.+.. ||++++|++|+++..|+.+++
T Consensus 428 ~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 428 VGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQA 482 (501)
T ss_pred HhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEeccccC
Confidence 999999999999985 47899999999998865 999999999999999987764
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=99.79 E-value=2e-19 Score=169.49 Aligned_cols=124 Identities=21% Similarity=0.281 Sum_probs=96.8
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHH----hhcceEEEcccCcccccccccccccccCCCCCCHHHH
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEA----EQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHI 160 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~----~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~~~~ 160 (632)
.+||++++||+++|+||||||||||+++|.|........ .+++++|++|++.++..++.+ |+.+.
T Consensus 19 ~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~--nl~~~--------- 87 (166)
T cd03223 19 DLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLRE--QLIYP--------- 87 (166)
T ss_pred cCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHH--Hhhcc---------
Confidence 389999999999999999999999999999653322111 135799999998766555555 55442
Q ss_pred HHHHHHccchhhHhhCCccccccc-----------------ccCCCCHHHHHHHHHHHHHHhCCceEEEEecCchHHhhc
Q 047286 161 RPAVQLANAEKSIDKLPLGLDTVV-----------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRNA 223 (632)
Q Consensus 161 ~~~~~~~~l~~~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~a 223 (632)
....||.|..+++ +|++||+.+++.+.+.++++ +.|+|++||+++....|
T Consensus 88 -----------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~ 154 (166)
T cd03223 88 -----------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKFH 154 (166)
T ss_pred -----------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhC
Confidence 1245555555544 38999999999999999886 58999999999877779
Q ss_pred CeEEEEeCC
Q 047286 224 DCIIMVSKG 232 (632)
Q Consensus 224 D~i~vl~~G 232 (632)
|++++|++|
T Consensus 155 d~i~~l~~~ 163 (166)
T cd03223 155 DRVLDLDGE 163 (166)
T ss_pred CEEEEEcCC
Confidence 999999875
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3e-19 Score=158.61 Aligned_cols=158 Identities=21% Similarity=0.308 Sum_probs=117.6
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCC---------------C-C-----cHHhhcceEEEcccCccccccccc
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRF---------------Y-A-----PEAEQEKIGLVSKEPIFLFCDFNE 144 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~---------------~-~-----~~~~r~~i~~v~Q~~~~~~~~~~~ 144 (632)
++|+-+.||.+.++||||+|||||++.+.-+.. . . ..++|+.+|+|+|+..++ ..++.
T Consensus 21 i~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lw-phltv 99 (242)
T COG4161 21 ITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLW-PHLTV 99 (242)
T ss_pred eeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhccC-chhHH
Confidence 888999999999999999999999997642110 0 0 123789999999997654 33333
Q ss_pred cccccc------CC-CCCCHHHHHHHHHHccchhhHh----hCCcccccccc-----------------cCCCCHHHHHH
Q 047286 145 GQYIPY------GK-QNASDEHIRPAVQLANAEKSID----KLPLGLDTVVA-----------------TNAVDAQSERI 196 (632)
Q Consensus 145 ~~~i~~------~~-~~~~~~~~~~~~~~~~l~~~i~----~l~~g~~~~v~-----------------ts~LD~~~~~~ 196 (632)
-+|+-- +. .+....+..+.++...+.++.+ .|++|.+++++ |++|||+-..+
T Consensus 100 ~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaq 179 (242)
T COG4161 100 QENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQ 179 (242)
T ss_pred HHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHH
Confidence 334321 11 1112233455566666655554 55678888884 89999999999
Q ss_pred HHHHHHHHhC-CceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHh
Q 047286 197 VQAAMVKLVT-NQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELI 244 (632)
Q Consensus 197 i~~~l~~~~~-~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~ 244 (632)
+.+.|+++.. |.|-+++||..+..+. |.+|+.|++|+|++.|+++-.-
T Consensus 180 vv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~ft 229 (242)
T COG4161 180 IVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFT 229 (242)
T ss_pred HHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhhcc
Confidence 9999999964 8899999999999876 9999999999999999987653
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.4e-19 Score=179.04 Aligned_cols=124 Identities=40% Similarity=0.588 Sum_probs=101.4
Q ss_pred cEEEeeEEEEEecCCCChHHHHHhhhcCCChhhh------------cHHHH-----------------------------
Q 047286 501 DIVFEHTVALVGENGNGKSTVISLAERFHNPEQV------------IYSWI----------------------------- 539 (632)
Q Consensus 501 ~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~~------------~~~~~----------------------------- 539 (632)
++.-++.++|+||+|||||||+++|.|++.|++- .....
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~ 103 (234)
T cd03251 24 DIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGA 103 (234)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeeccccHHHHhhccCCCC
Confidence 4555568999999999999999999999877430 00000
Q ss_pred ----------HHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh----------------------------
Q 047286 540 ----------IIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY---------------------------- 581 (632)
Q Consensus 540 ----------~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~---------------------------- 581 (632)
...+.+++..+|.|+++..+....+||||||||++||||+..
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~ 183 (234)
T cd03251 104 TREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALER 183 (234)
T ss_pred CHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 003456777888899999999999999999999999999654
Q ss_pred -------hccccchhhhhcCCEEEEEeCCeEeeecChHHHhccCCchhHHH
Q 047286 582 -------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKITDGTYASL 625 (632)
Q Consensus 582 -------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l 625 (632)
+++||.+..+..||+|++|++|++++.|+.++++.. .+.|+.+
T Consensus 184 ~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~ 233 (234)
T cd03251 184 LMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ-GGVYAKL 233 (234)
T ss_pred hcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHc-Ccchhhh
Confidence 788999999989999999999999999999999986 7777654
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.3e-19 Score=169.42 Aligned_cols=122 Identities=30% Similarity=0.385 Sum_probs=95.8
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC---------------C--cHHhhcceEEEcccCccccc-ccccccc
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY---------------A--PEAEQEKIGLVSKEPIFLFC-DFNEGQY 147 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~---------------~--~~~~r~~i~~v~Q~~~~~~~-~~~~~~~ 147 (632)
+||++++||+++|+||||||||||+++|.|.... + +...++.++|++|++.++.. ++.+ |
T Consensus 19 i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~--~ 96 (178)
T cd03229 19 VSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLE--N 96 (178)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHH--h
Confidence 8999999999999999999999999999865221 0 12345789999999876542 4444 4
Q ss_pred cccCCCCCCHHHHHHHHHHccchhhHhhCCccccccc-----------------ccCCCCHHHHHHHHHHHHHHhC--Cc
Q 047286 148 IPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV-----------------ATNAVDAQSERIVQAAMVKLVT--NQ 208 (632)
Q Consensus 148 i~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l~~~~~--~~ 208 (632)
+.+. +|.|+.+++ +|++||+.++..+.+.|+++.+ ++
T Consensus 97 l~~~------------------------lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~ 152 (178)
T cd03229 97 IALG------------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGI 152 (178)
T ss_pred eeec------------------------CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 4322 444444443 4899999999999999999864 58
Q ss_pred eEEEEecCchHHh-hcCeEEEEeCCe
Q 047286 209 TVVIVANCLITIR-NADCIIMVSKGK 233 (632)
Q Consensus 209 tviiitH~~~~~~-~aD~i~vl~~G~ 233 (632)
|+|++||+++.+. .||++++|++|+
T Consensus 153 tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 153 TVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred EEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 9999999999987 499999999985
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.1e-19 Score=197.58 Aligned_cols=158 Identities=20% Similarity=0.250 Sum_probs=121.0
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHH----hhcceEEEcccCc-ccccccccccccccC-CCCCCHHH
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEA----EQEKIGLVSKEPI-FLFCDFNEGQYIPYG-KQNASDEH 159 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~----~r~~i~~v~Q~~~-~~~~~~~~~~~i~~~-~~~~~~~~ 159 (632)
+||+|++|++++|+||||||||||+++|+|+....... .+..++|++|++. .+....+..+|+.+. ......++
T Consensus 338 is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~ 417 (530)
T PRK15064 338 LNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQA 417 (530)
T ss_pred cEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCCCCcHHHHHHHhccCCccHHH
Confidence 89999999999999999999999999999653222111 2357999999974 233323333344322 11223556
Q ss_pred HHHHHHHccc-----hhhHhhCCccccccc-----------------ccCCCCHHHHHHHHHHHHHHhCCceEEEEecCc
Q 047286 160 IRPAVQLANA-----EKSIDKLPLGLDTVV-----------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCL 217 (632)
Q Consensus 160 ~~~~~~~~~l-----~~~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~ 217 (632)
+.++++..++ +..+..||+|+++++ +|++||+.+.+.+.+.|+++ +.|+|++||+.
T Consensus 418 ~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~ 495 (530)
T PRK15064 418 VRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDR 495 (530)
T ss_pred HHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCH
Confidence 7778888766 235788999998887 39999999999999999887 45999999999
Q ss_pred hHHhh-cCeEEEEeCCeEE-EecChhHHhc
Q 047286 218 ITIRN-ADCIIMVSKGKIV-EKGTHDELIE 245 (632)
Q Consensus 218 ~~~~~-aD~i~vl~~G~i~-~~g~~~el~~ 245 (632)
+.+.. ||++++|++|+++ ..|+++++.+
T Consensus 496 ~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~ 525 (530)
T PRK15064 496 EFVSSLATRIIEITPDGVVDFSGTYEEYLR 525 (530)
T ss_pred HHHHHhCCEEEEEECCeEEEcCCCHHHHHH
Confidence 98865 9999999999998 7888888754
|
|
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.3e-19 Score=160.34 Aligned_cols=172 Identities=23% Similarity=0.364 Sum_probs=126.2
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCC-------C-----CcHH------------hhcceEEEcccCccc-c
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRF-------Y-----APEA------------EQEKIGLVSKEPIFL-F 139 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~-------~-----~~~~------------~r~~i~~v~Q~~~~~-~ 139 (632)
++||++.|||..+|||+||||||||+++|.+-.. | .+.+ .|..-|+|.|+|.-- -
T Consensus 24 ~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLR 103 (258)
T COG4107 24 DVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLR 103 (258)
T ss_pred ccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeecCccccce
Confidence 3999999999999999999999999999963211 1 0100 345689999998420 1
Q ss_pred cccccccccc-----cCCCCC--CHHHHHHHHHHcc-----chhhHhhCCccccccc-----------------ccCCCC
Q 047286 140 CDFNEGQYIP-----YGKQNA--SDEHIRPAVQLAN-----AEKSIDKLPLGLDTVV-----------------ATNAVD 190 (632)
Q Consensus 140 ~~~~~~~~i~-----~~~~~~--~~~~~~~~~~~~~-----l~~~i~~l~~g~~~~v-----------------~ts~LD 190 (632)
..+....||. .|.+.+ ...+..+.++.+. +++....+++|+++++ +|.+||
T Consensus 104 m~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLD 183 (258)
T COG4107 104 MQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLD 183 (258)
T ss_pred eeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcc
Confidence 1111222321 121111 1233344555554 4455667888998776 389999
Q ss_pred HHHHHHHHHHHHHHhC--CceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcCCCcHHHHHHH
Q 047286 191 AQSERIVQAAMVKLVT--NQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVR 256 (632)
Q Consensus 191 ~~~~~~i~~~l~~~~~--~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~ 256 (632)
...+..+.++++.+.. +-.++++|||+..++. +||..+|++|++++.|-.+.++.+|..+|.++.-
T Consensus 184 VSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~GLTDrvLDDP~hPYTQLLV 252 (258)
T COG4107 184 VSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGLTDRVLDDPHHPYTQLLV 252 (258)
T ss_pred hhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEeccccccccccCCCCchHHHHH
Confidence 9999999999999854 6799999999999986 9999999999999999999999999999988753
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.2e-19 Score=164.61 Aligned_cols=156 Identities=25% Similarity=0.324 Sum_probs=119.0
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHHh----------hcceEEEcccCcccccccccccccccCCCC
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAE----------QEKIGLVSKEPIFLFCDFNEGQYIPYGKQN 154 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~~----------r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~ 154 (632)
++|++|.+||+++++||||||||||+|++.|+..+..... -..-|+|+|++.+++ ..+..+|+.|+.+-
T Consensus 23 ~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlP-Wl~~~dNvafgL~l 101 (259)
T COG4525 23 DVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLP-WLNVIDNVAFGLQL 101 (259)
T ss_pred ccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCccch-hhHHHHHHHHHHHh
Confidence 3999999999999999999999999999996533221110 124589999987653 44444588887532
Q ss_pred --CC----HHHHHHHHHHccch----hhHhhCCcccccccc-----------------cCCCCHHHHHHHHHHHHHHh--
Q 047286 155 --AS----DEHIRPAVQLANAE----KSIDKLPLGLDTVVA-----------------TNAVDAQSERIVQAAMVKLV-- 205 (632)
Q Consensus 155 --~~----~~~~~~~~~~~~l~----~~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~~l~~~~-- 205 (632)
.. .+...+.+..+++. +++-+|++|++++++ +++||.-+++.+++.+.++.
T Consensus 102 ~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~ 181 (259)
T COG4525 102 RGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQE 181 (259)
T ss_pred cCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHH
Confidence 12 23345566666664 457789999999984 78999999999999998874
Q ss_pred CCceEEEEecCchHHhh-cCeEEEEe--CCeEEEecChh
Q 047286 206 TNQTVVIVANCLITIRN-ADCIIMVS--KGKIVEKGTHD 241 (632)
Q Consensus 206 ~~~tviiitH~~~~~~~-aD~i~vl~--~G~i~~~g~~~ 241 (632)
.++.+++|||+++++-. |+++++|+ .|+|++.-+++
T Consensus 182 tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 182 TGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred hCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCCC
Confidence 48999999999988765 99999997 58998765443
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.4e-19 Score=177.64 Aligned_cols=130 Identities=47% Similarity=0.627 Sum_probs=103.7
Q ss_pred ccccEEEeeEEEEEecCCCChHHHHHhhhcCCChhhh------------cHHH------------------H--------
Q 047286 498 VRGDIVFEHTVALVGENGNGKSTVISLAERFHNPEQV------------IYSW------------------I-------- 539 (632)
Q Consensus 498 ~~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~~------------~~~~------------------~-------- 539 (632)
+.-+++-++.+||+||+|||||||+++|.|++.|++. .... .
T Consensus 22 i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~ 101 (238)
T cd03249 22 LSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGK 101 (238)
T ss_pred eEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhhhhHHHHhhccC
Confidence 3335555679999999999999999999999876320 0000 0
Q ss_pred -------------HHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh-------------------------
Q 047286 540 -------------IIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY------------------------- 581 (632)
Q Consensus 540 -------------~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~------------------------- 581 (632)
..++.+++..+|.|+++.......+||||||||++||||+..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~ 181 (238)
T cd03249 102 PDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEA 181 (238)
T ss_pred CCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHH
Confidence 002345677888899999988889999999999999999554
Q ss_pred ----------hccccchhhhhcCCEEEEEeCCeEeeecChHHHhccCCchhHHHHHh
Q 047286 582 ----------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKITDGTYASLTAL 628 (632)
Q Consensus 582 ----------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~~~ 628 (632)
++++|.++.+..||+|++|++|++++.|+.+++... .+.++.++..
T Consensus 182 l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~~~~ 237 (238)
T cd03249 182 LDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQ-KGVYAKLVKA 237 (238)
T ss_pred HHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhc-ChhHHHHhhc
Confidence 678999999999999999999999999999999986 7777776643
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.6e-19 Score=217.21 Aligned_cols=160 Identities=14% Similarity=0.187 Sum_probs=125.6
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC--------------CcHHhhcceEEEcccCcccccccccccccccC
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY--------------APEAEQEKIGLVSKEPIFLFCDFNEGQYIPYG 151 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~--------------~~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~ 151 (632)
+||+|++||+++|+||||||||||+|+|.|.... .....++.+||+||++.++. .++..+++.+.
T Consensus 1958 ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~-~LTv~E~L~l~ 2036 (2272)
T TIGR01257 1958 LCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDD-LLTGREHLYLY 2036 (2272)
T ss_pred eEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEEEEeccccCCC-CCCHHHHHHHH
Confidence 8999999999999999999999999999865321 11234678999999987653 33333355431
Q ss_pred C--CCCC----HHHHHHHHHHccchh----hHhhCCccccccc-----------------ccCCCCHHHHHHHHHHHHHH
Q 047286 152 K--QNAS----DEHIRPAVQLANAEK----SIDKLPLGLDTVV-----------------ATNAVDAQSERIVQAAMVKL 204 (632)
Q Consensus 152 ~--~~~~----~~~~~~~~~~~~l~~----~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l~~~ 204 (632)
. .... .+.+.++++.+++.+ .+.+|++|.++++ +|+||||.+++.+++.|+++
T Consensus 2037 a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l 2116 (2272)
T TIGR01257 2037 ARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSI 2116 (2272)
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 1 1111 234556777787754 4678999999887 39999999999999999997
Q ss_pred h-CCceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcC
Q 047286 205 V-TNQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIED 246 (632)
Q Consensus 205 ~-~~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~ 246 (632)
. +++|+|++||++++++. ||||++|++|++++.|+++++.+.
T Consensus 2117 ~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~ 2160 (2272)
T TIGR01257 2117 IREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSK 2160 (2272)
T ss_pred HhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHH
Confidence 4 57899999999999875 999999999999999999998654
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.8e-19 Score=170.81 Aligned_cols=123 Identities=23% Similarity=0.275 Sum_probs=88.7
Q ss_pred ccccEEEeeEEEEEecCCCChHHHHHhhhcCCChhh------------hcHHHH--------------------------
Q 047286 498 VRGDIVFEHTVALVGENGNGKSTVISLAERFHNPEQ------------VIYSWI-------------------------- 539 (632)
Q Consensus 498 ~~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~------------~~~~~~-------------------------- 539 (632)
++-+|+-++.+.++|||||||||+++++.|+++|++ ++...+
T Consensus 20 v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~V 99 (309)
T COG1125 20 VNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATV 99 (309)
T ss_pred eeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhh
Confidence 344566667899999999999999999999999965 111111
Q ss_pred ----------HH-HHHHHHhcCCCccCc--ccccCCCCCChHHHHHHHHHHHHhh-------------------------
Q 047286 540 ----------II-KCTNFIASLPQGSDL--NVGERGLQLSGGLKQRIARTRARNY------------------------- 581 (632)
Q Consensus 540 ----------~~-~~~~~i~~lp~g~dt--~vge~G~~LSgGQrQRiaiARA~~~------------------------- 581 (632)
+. .+.+...- -|+|- -...-...|||||+||+.+|||+..
T Consensus 100 P~L~~w~k~~i~~r~~ELl~l--vgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e 177 (309)
T COG1125 100 PKLLGWDKERIKKRADELLDL--VGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEE 177 (309)
T ss_pred hhhcCCCHHHHHHHHHHHHHH--hCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHH
Confidence 00 11122111 13332 1233467899999999999999432
Q ss_pred ------------hccccchh-hhhcCCEEEEEeCCeEeeecChHHHhccCCchh
Q 047286 582 ------------CGCGSPPY-HYKNADITSVVKNGVIAEKGRHDALMKITDGTY 622 (632)
Q Consensus 582 ------------~~iahrl~-~~~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y 622 (632)
+.+||... .++-||||+||++|+|++.|+++++++++...|
T Consensus 178 ~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pan~F 231 (309)
T COG1125 178 IKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPANDF 231 (309)
T ss_pred HHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCccHHH
Confidence 78899865 568899999999999999999999998754333
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.4e-19 Score=197.25 Aligned_cols=155 Identities=17% Similarity=0.279 Sum_probs=116.5
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC---------------c-HHhhcceEEEcccC---cccc-ccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA---------------P-EAEQEKIGLVSKEP---IFLF-CDFNE 144 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~---------------~-~~~r~~i~~v~Q~~---~~~~-~~~~~ 144 (632)
.+||+|++|++++|+||||||||||+++|+|+.... + ...++.++|++|++ .++. .++.+
T Consensus 281 ~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e 360 (510)
T PRK09700 281 DISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQ 360 (510)
T ss_pred ceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHH
Confidence 399999999999999999999999999998653210 0 12356799999984 3332 23333
Q ss_pred ccccccCCC-------------C--CCHHHHHHHHHHccch-----hhHhhCCccccccc-----------------ccC
Q 047286 145 GQYIPYGKQ-------------N--ASDEHIRPAVQLANAE-----KSIDKLPLGLDTVV-----------------ATN 187 (632)
Q Consensus 145 ~~~i~~~~~-------------~--~~~~~~~~~~~~~~l~-----~~i~~l~~g~~~~v-----------------~ts 187 (632)
|+.++.. . ...+++.++++..++. ..+.+||+|+++++ +|+
T Consensus 361 --~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~ 438 (510)
T PRK09700 361 --NMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTR 438 (510)
T ss_pred --HhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECCCCC
Confidence 4443211 0 0123456677777663 34678999999888 399
Q ss_pred CCCHHHHHHHHHHHHHHh-CCceEEEEecCchHHhh-cCeEEEEeCCeEEEecChh
Q 047286 188 AVDAQSERIVQAAMVKLV-TNQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHD 241 (632)
Q Consensus 188 ~LD~~~~~~i~~~l~~~~-~~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~ 241 (632)
+||+.+++.+.+.|+++. ++.|+|++||+++.+.. ||++++|++|++++.++..
T Consensus 439 ~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 494 (510)
T PRK09700 439 GIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTNR 494 (510)
T ss_pred CcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecCc
Confidence 999999999999999874 47899999999988764 9999999999999887653
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.1e-19 Score=179.04 Aligned_cols=158 Identities=18% Similarity=0.244 Sum_probs=113.7
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCc-----------------HHh-hcceEEEcccCccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAP-----------------EAE-QEKIGLVSKEPIFLFCDFNEGQ 146 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~-----------------~~~-r~~i~~v~Q~~~~~~~~~~~~~ 146 (632)
.+||+|++|++++|+||||||||||+++|.|+..+.| ... +..++|++|++.++.. .+...
T Consensus 19 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~-~~~~~ 97 (248)
T PRK09580 19 GLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPG-VSNQF 97 (248)
T ss_pred cceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccc-hhHHH
Confidence 3999999999999999999999999999997631111 111 2469999999865432 11110
Q ss_pred -------ccccCCC-C-CC----HHHHHHHHHHccchh-----hH-hhCCccccccc-----------------ccCCCC
Q 047286 147 -------YIPYGKQ-N-AS----DEHIRPAVQLANAEK-----SI-DKLPLGLDTVV-----------------ATNAVD 190 (632)
Q Consensus 147 -------~i~~~~~-~-~~----~~~~~~~~~~~~l~~-----~i-~~l~~g~~~~v-----------------~ts~LD 190 (632)
++..... . .. .+.+.+.++..++.+ .. ..||+|..+++ +|++||
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illLDEPt~~LD 177 (248)
T PRK09580 98 FLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLD 177 (248)
T ss_pred HHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCC
Confidence 1111100 0 11 223445555555521 12 26899998877 399999
Q ss_pred HHHHHHHHHHHHHHhC-CceEEEEecCchHHhh--cCeEEEEeCCeEEEecChhHH
Q 047286 191 AQSERIVQAAMVKLVT-NQTVVIVANCLITIRN--ADCIIMVSKGKIVEKGTHDEL 243 (632)
Q Consensus 191 ~~~~~~i~~~l~~~~~-~~tviiitH~~~~~~~--aD~i~vl~~G~i~~~g~~~el 243 (632)
+.+++.+.+.|+++.+ ++|+|++||++..+.. ||++++|++|++++.|+++.+
T Consensus 178 ~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~~~ 233 (248)
T PRK09580 178 IDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLV 233 (248)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHHHH
Confidence 9999999999998864 6899999999998875 899999999999999988754
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3e-19 Score=185.58 Aligned_cols=115 Identities=20% Similarity=0.219 Sum_probs=86.3
Q ss_pred ccEEEeeEEEEEecCCCChHHHHHhhhcCCChhhh---------c------------------H-HHH------------
Q 047286 500 GDIVFEHTVALVGENGNGKSTVISLAERFHNPEQV---------I------------------Y-SWI------------ 539 (632)
Q Consensus 500 g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~~---------~------------------~-~~~------------ 539 (632)
-+|.-++++||+|+||||||||+++|.|+++|++. . . ...
T Consensus 47 l~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~ 126 (320)
T PRK13631 47 YTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPE 126 (320)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhcEEEEEECch
Confidence 34555569999999999999999999999887430 0 0 000
Q ss_pred -----------H---------------HHHHHHHhcCCCccC-cccccCCCCCChHHHHHHHHHHHHhh-----------
Q 047286 540 -----------I---------------IKCTNFIASLPQGSD-LNVGERGLQLSGGLKQRIARTRARNY----------- 581 (632)
Q Consensus 540 -----------~---------------~~~~~~i~~lp~g~d-t~vge~G~~LSgGQrQRiaiARA~~~----------- 581 (632)
+ ..+.+++..+ |++ ......+.+||||||||++||||+..
T Consensus 127 ~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~--gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPt 204 (320)
T PRK13631 127 YQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKM--GLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPT 204 (320)
T ss_pred hccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHc--CCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 0 0111223333 453 34667788999999999999999654
Q ss_pred -------------------------hccccchhhh-hcCCEEEEEeCCeEeeecChHHHhc
Q 047286 582 -------------------------CGCGSPPYHY-KNADITSVVKNGVIAEKGRHDALMK 616 (632)
Q Consensus 582 -------------------------~~iahrl~~~-~~aD~I~vl~~G~ive~G~h~eL~~ 616 (632)
+++||+++.+ +.||+|++|++|+|++.|+|+++.+
T Consensus 205 sgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~ 265 (320)
T PRK13631 205 AGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIFT 265 (320)
T ss_pred cCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 7889999977 6799999999999999999997643
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.4e-19 Score=173.58 Aligned_cols=143 Identities=22% Similarity=0.349 Sum_probs=109.4
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC---------------c----HHhhcceEEEcccCcccc-ccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA---------------P----EAEQEKIGLVSKEPIFLF-CDFNE 144 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~---------------~----~~~r~~i~~v~Q~~~~~~-~~~~~ 144 (632)
.+||++++||+++|+||||||||||+++|.|+.... + ...++.++|++|++.++. .++.+
T Consensus 16 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e 95 (206)
T TIGR03608 16 DLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENETVEE 95 (206)
T ss_pred ceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccCCcHHH
Confidence 399999999999999999999999999998653210 0 013567999999987665 35554
Q ss_pred ccccccCCC------CCCHHHHHHHHHHccch----hhHhhCCccccccc-----------------ccCCCCHHHHHHH
Q 047286 145 GQYIPYGKQ------NASDEHIRPAVQLANAE----KSIDKLPLGLDTVV-----------------ATNAVDAQSERIV 197 (632)
Q Consensus 145 ~~~i~~~~~------~~~~~~~~~~~~~~~l~----~~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i 197 (632)
|+.+... ....+++.++++..++. ..+..||.|..+++ +|++||+.+++.+
T Consensus 96 --~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l 173 (206)
T TIGR03608 96 --NLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEV 173 (206)
T ss_pred --HHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHH
Confidence 5544211 11234566777777764 45677888988777 3999999999999
Q ss_pred HHHHHHHhC-CceEEEEecCchHHhhcCeEEEE
Q 047286 198 QAAMVKLVT-NQTVVIVANCLITIRNADCIIMV 229 (632)
Q Consensus 198 ~~~l~~~~~-~~tviiitH~~~~~~~aD~i~vl 229 (632)
.+.|+++.+ +.|+|++||++.....||++++|
T Consensus 174 ~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 174 LDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 999998854 78999999999887789999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.8e-19 Score=196.63 Aligned_cols=158 Identities=16% Similarity=0.220 Sum_probs=118.8
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC---------------cH-HhhcceEEEcccCc---ccc-ccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA---------------PE-AEQEKIGLVSKEPI---FLF-CDFNE 144 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~---------------~~-~~r~~i~~v~Q~~~---~~~-~~~~~ 144 (632)
.+||+|++|++++|+||||||||||+++|.|+.... +. ..+..++|++|++. ++. .++.+
T Consensus 281 ~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~ 360 (510)
T PRK15439 281 NISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAW 360 (510)
T ss_pred ceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHH
Confidence 399999999999999999999999999998652110 11 12457999999852 332 23333
Q ss_pred cccccc------C---CCCCCHHHHHHHHHHccch-----hhHhhCCccccccc-----------------ccCCCCHHH
Q 047286 145 GQYIPY------G---KQNASDEHIRPAVQLANAE-----KSIDKLPLGLDTVV-----------------ATNAVDAQS 193 (632)
Q Consensus 145 ~~~i~~------~---~~~~~~~~~~~~~~~~~l~-----~~i~~l~~g~~~~v-----------------~ts~LD~~~ 193 (632)
|+.. . ......+++.++++..++. ..+.+||+|+++++ +|++||+.+
T Consensus 361 --~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~ 438 (510)
T PRK15439 361 --NVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSA 438 (510)
T ss_pred --HHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhH
Confidence 3321 0 0111123456777777664 44678999999888 399999999
Q ss_pred HHHHHHHHHHHh-CCceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHh
Q 047286 194 ERIVQAAMVKLV-TNQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELI 244 (632)
Q Consensus 194 ~~~i~~~l~~~~-~~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~ 244 (632)
++.+.+.|+++. ++.|+|++||+++.+.. ||++++|++|+++..|+.+++.
T Consensus 439 ~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 491 (510)
T PRK15439 439 RNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAIN 491 (510)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccCC
Confidence 999999999985 47899999999998865 9999999999999999887764
|
|
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.6e-19 Score=171.76 Aligned_cols=158 Identities=12% Similarity=0.111 Sum_probs=109.8
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHHh---hcceEEEcccCcccccccccccccccCC--CCCCHHHH
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAE---QEKIGLVSKEPIFLFCDFNEGQYIPYGK--QNASDEHI 160 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~~---r~~i~~v~Q~~~~~~~~~~~~~~i~~~~--~~~~~~~~ 160 (632)
+||+|++|++++|+||||||||||+++|+|+......+. ....-.+.+++.++. .++..+|+.+.. .....++.
T Consensus 6 vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~~~~~~~l~~-~ltv~enl~~~~~~~~~~~~~~ 84 (213)
T PRK15177 6 TDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALPLGANSFILP-GLTGEENARMMASLYGLDGDEF 84 (213)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceeccccccccCC-cCcHHHHHHHHHHHcCCCHHHH
Confidence 899999999999999999999999999996533222111 111112333444333 233233554421 11233333
Q ss_pred HHHH-HHccc----hhhHhhCCcccccccc-----------------cCCCCHHHHHHHHHHHHHHhCCceEEEEecCch
Q 047286 161 RPAV-QLANA----EKSIDKLPLGLDTVVA-----------------TNAVDAQSERIVQAAMVKLVTNQTVVIVANCLI 218 (632)
Q Consensus 161 ~~~~-~~~~l----~~~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~ 218 (632)
.+.+ +..++ +..+..+|.|++++++ ++++|+.+++.+.+.+.+..+++|+|++||++.
T Consensus 85 ~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~~~ii~vsH~~~ 164 (213)
T PRK15177 85 SHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQQKGLIVLTHNPR 164 (213)
T ss_pred HHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhhCCcEEEEECCHH
Confidence 3222 33333 3467789999988773 789999999999998866555678999999999
Q ss_pred HHh-hcCeEEEEeCCeEEEecChhHHh
Q 047286 219 TIR-NADCIIMVSKGKIVEKGTHDELI 244 (632)
Q Consensus 219 ~~~-~aD~i~vl~~G~i~~~g~~~el~ 244 (632)
.+. .||++++|++|++++.++.++..
T Consensus 165 ~~~~~~d~i~~l~~G~i~~~~~~~~~~ 191 (213)
T PRK15177 165 LIKEHCHAFGVLLHGKITMCEDLAQAT 191 (213)
T ss_pred HHHHhcCeeEEEECCeEEEeCCHHHHH
Confidence 886 59999999999999999988874
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.2e-19 Score=168.16 Aligned_cols=123 Identities=26% Similarity=0.421 Sum_probs=94.7
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHH-----------------hhcceEEEcccCcccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEA-----------------EQEKIGLVSKEPIFLFCDFNEGQY 147 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~-----------------~r~~i~~v~Q~~~~~~~~~~~~~~ 147 (632)
.+||++++|++++|+||||||||||+++|.|+ ..|.+ +++.++|++|
T Consensus 17 ~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~--~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q-------------- 80 (180)
T cd03214 17 DLSLSIEAGEIVGILGPNGAGKSTLLKTLAGL--LKPSSGEILLDGKDLASLSPKELARKIAYVPQ-------------- 80 (180)
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHhCC--CCCCCcEEEECCEECCcCCHHHHHHHHhHHHH--------------
Confidence 38999999999999999999999999999854 32221 1112222222
Q ss_pred cccCCCCCCHHHHHHHHHHccchh----hHhhCCccccccc-----------------ccCCCCHHHHHHHHHHHHHHhC
Q 047286 148 IPYGKQNASDEHIRPAVQLANAEK----SIDKLPLGLDTVV-----------------ATNAVDAQSERIVQAAMVKLVT 206 (632)
Q Consensus 148 i~~~~~~~~~~~~~~~~~~~~l~~----~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l~~~~~ 206 (632)
+++.+++.+ ....||.|..+++ +|++||+.+++.+.+.|.++.+
T Consensus 81 ---------------~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~ 145 (180)
T cd03214 81 ---------------ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLAR 145 (180)
T ss_pred ---------------HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH
Confidence 444445443 3456788887776 3999999999999999998864
Q ss_pred --CceEEEEecCchHHh-hcCeEEEEeCCeEEEec
Q 047286 207 --NQTVVIVANCLITIR-NADCIIMVSKGKIVEKG 238 (632)
Q Consensus 207 --~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g 238 (632)
+.|+|++||+++.+. .||++++|++|++++.|
T Consensus 146 ~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 146 ERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 689999999999875 59999999999998653
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.7e-19 Score=185.17 Aligned_cols=120 Identities=21% Similarity=0.243 Sum_probs=91.0
Q ss_pred cEEEeeEEEEEecCCCChHHHHHhhhcCCChhhh------------c--------------------H------H-----
Q 047286 501 DIVFEHTVALVGENGNGKSTVISLAERFHNPEQV------------I--------------------Y------S----- 537 (632)
Q Consensus 501 ~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~~------------~--------------------~------~----- 537 (632)
+|+-+++++|+||||||||||+++|.|+++|++- . . .
T Consensus 26 ~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~ 105 (353)
T TIGR03265 26 SVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRG 105 (353)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhcC
Confidence 4444568999999999999999999999887430 0 0 0
Q ss_pred ----HHHHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh--------------------------------
Q 047286 538 ----WIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY-------------------------------- 581 (632)
Q Consensus 538 ----~~~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~-------------------------------- 581 (632)
.....+.+.+..+ |++........+||||||||+|||||+..
T Consensus 106 ~~~~~~~~~~~~~l~~l--~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~ 183 (353)
T TIGR03265 106 MGRAEVAERVAELLDLV--GLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRR 183 (353)
T ss_pred CCHHHHHHHHHHHHHHc--CCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh
Confidence 0011223344443 55555666778999999999999999554
Q ss_pred -----hccccchhhh-hcCCEEEEEeCCeEeeecChHHHhccCCchh
Q 047286 582 -----CGCGSPPYHY-KNADITSVVKNGVIAEKGRHDALMKITDGTY 622 (632)
Q Consensus 582 -----~~iahrl~~~-~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y 622 (632)
+++||.++.+ .-||+|++|++|+|++.|++++++.++...|
T Consensus 184 ~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p~~~~ 230 (353)
T TIGR03265 184 LGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPATPF 230 (353)
T ss_pred cCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHH
Confidence 7889999976 5799999999999999999999998644344
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1e-18 Score=182.14 Aligned_cols=122 Identities=26% Similarity=0.281 Sum_probs=88.7
Q ss_pred cEEEeeEEEEEecCCCChHHHHHhhhcCCChhh------------hcHH---HH------------------------H-
Q 047286 501 DIVFEHTVALVGENGNGKSTVISLAERFHNPEQ------------VIYS---WI------------------------I- 540 (632)
Q Consensus 501 ~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~------------~~~~---~~------------------------~- 540 (632)
+|.-++++||||+||||||||+++|.|++.|++ +... .. +
T Consensus 37 ~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~ 116 (327)
T PRK11308 37 TLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILE 116 (327)
T ss_pred EECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHH
Confidence 445556999999999999999999999987642 0000 00 0
Q ss_pred ---------------HHHHHHHhcCCCccCc-ccccCCCCCChHHHHHHHHHHHHhh-----------------------
Q 047286 541 ---------------IKCTNFIASLPQGSDL-NVGERGLQLSGGLKQRIARTRARNY----------------------- 581 (632)
Q Consensus 541 ---------------~~~~~~i~~lp~g~dt-~vge~G~~LSgGQrQRiaiARA~~~----------------------- 581 (632)
..+.+++..+ |++. ........||||||||++||||+..
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~l~~~--gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~ 194 (327)
T PRK11308 117 EPLLINTSLSAAERREKALAMMAKV--GLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVL 194 (327)
T ss_pred HHHHHccCCCHHHHHHHHHHHHHHC--CCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHH
Confidence 0122333332 2221 2234556899999999999999554
Q ss_pred --------------hccccchhhhh-cCCEEEEEeCCeEeeecChHHHhccCCchhHH
Q 047286 582 --------------CGCGSPPYHYK-NADITSVVKNGVIAEKGRHDALMKITDGTYAS 624 (632)
Q Consensus 582 --------------~~iahrl~~~~-~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~ 624 (632)
++|||.++.+. .||+|+||++|+|+|.|+.+++++++...|.+
T Consensus 195 ~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g~~~~~~~~p~hpyt~ 252 (327)
T PRK11308 195 NLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQIFNNPRHPYTQ 252 (327)
T ss_pred HHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhcCCCCHHHH
Confidence 78999999996 59999999999999999999999864445654
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.7e-19 Score=182.91 Aligned_cols=124 Identities=17% Similarity=0.177 Sum_probs=91.0
Q ss_pred cEEEeeEEEEEecCCCChHHHHHhhhcCCChh---h---------h---cHHHH--------------------------
Q 047286 501 DIVFEHTVALVGENGNGKSTVISLAERFHNPE---Q---------V---IYSWI-------------------------- 539 (632)
Q Consensus 501 ~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~---~---------~---~~~~~-------------------------- 539 (632)
+|.-++++||||+||||||||+++|.|+++|+ + + .....
T Consensus 38 ~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~ 117 (330)
T PRK09473 38 SLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVG 117 (330)
T ss_pred EEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHH
Confidence 45555699999999999999999999999873 1 0 00000
Q ss_pred --HH----------------HHHHHHh--cCCCccCcccccCCCCCChHHHHHHHHHHHHhh------------------
Q 047286 540 --II----------------KCTNFIA--SLPQGSDLNVGERGLQLSGGLKQRIARTRARNY------------------ 581 (632)
Q Consensus 540 --~~----------------~~~~~i~--~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~------------------ 581 (632)
+. .+.+.+. .||++. ..+.....+||||||||++||||+..
T Consensus 118 ~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~-~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~ 196 (330)
T PRK09473 118 EQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEAR-KRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTV 196 (330)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChH-HHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHH
Confidence 00 0111111 233332 23566788999999999999999544
Q ss_pred -------------------hccccchhhhh-cCCEEEEEeCCeEeeecChHHHhccCCchhHHH
Q 047286 582 -------------------CGCGSPPYHYK-NADITSVVKNGVIAEKGRHDALMKITDGTYASL 625 (632)
Q Consensus 582 -------------------~~iahrl~~~~-~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l 625 (632)
++|||.+..+. .||+|+||++|+|+|.|+.+++.+++...|.+.
T Consensus 197 ~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~~~i~~~p~~pyt~~ 260 (330)
T PRK09473 197 QAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDVFYQPSHPYSIG 260 (330)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHH
Confidence 78999999986 699999999999999999999998655566653
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=99.77 E-value=1e-18 Score=183.50 Aligned_cols=123 Identities=21% Similarity=0.259 Sum_probs=92.5
Q ss_pred ccccEEEeeEEEEEecCCCChHHHHHhhhcCCChhh------------hcHHHH--------------------------
Q 047286 498 VRGDIVFEHTVALVGENGNGKSTVISLAERFHNPEQ------------VIYSWI-------------------------- 539 (632)
Q Consensus 498 ~~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~------------~~~~~~-------------------------- 539 (632)
++-+|+-++.++|+||||||||||+++|.|+++|++ ......
T Consensus 12 vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eN 91 (363)
T TIGR01186 12 ADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQN 91 (363)
T ss_pred eEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHHH
Confidence 334566667999999999999999999999998743 011000
Q ss_pred H---------------HHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh-----------------------
Q 047286 540 I---------------IKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY----------------------- 581 (632)
Q Consensus 540 ~---------------~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~----------------------- 581 (632)
+ ..+.+.+..+ |++........+||||||||++||||+..
T Consensus 92 i~~~~~~~~~~~~~~~~~~~~~l~~v--gL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~ 169 (363)
T TIGR01186 92 TSLGPELLGWPEQERKEKALELLKLV--GLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQ 169 (363)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhc--CCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 0 0112233322 56666778888999999999999999544
Q ss_pred --------------hccccchhhh-hcCCEEEEEeCCeEeeecChHHHhccCCchh
Q 047286 582 --------------CGCGSPPYHY-KNADITSVVKNGVIAEKGRHDALMKITDGTY 622 (632)
Q Consensus 582 --------------~~iahrl~~~-~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y 622 (632)
+++||.++.+ +.||+|++|++|+|++.|+++|+++++...|
T Consensus 170 ~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~~~~ 225 (363)
T TIGR01186 170 DELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEY 225 (363)
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcccHH
Confidence 7889999865 6799999999999999999999997643334
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.8e-19 Score=195.37 Aligned_cols=157 Identities=16% Similarity=0.224 Sum_probs=117.5
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC-C---------------c-HHhhcceEEEcccC---ccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY-A---------------P-EAEQEKIGLVSKEP---IFLFCDFNE 144 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~-~---------------~-~~~r~~i~~v~Q~~---~~~~~~~~~ 144 (632)
.+||+|++||+++|+||||||||||+++|+|...+ . + ...+++++|++|++ .++. ..+.
T Consensus 278 ~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~-~~tv 356 (500)
T TIGR02633 278 DVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVP-ILGV 356 (500)
T ss_pred cceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCC-CCCH
Confidence 39999999999999999999999999999876321 0 0 12356799999996 2333 2222
Q ss_pred ccccccCC----C---CCC----HHHHHHHHHHccch-----hhHhhCCccccccc-----------------ccCCCCH
Q 047286 145 GQYIPYGK----Q---NAS----DEHIRPAVQLANAE-----KSIDKLPLGLDTVV-----------------ATNAVDA 191 (632)
Q Consensus 145 ~~~i~~~~----~---~~~----~~~~~~~~~~~~l~-----~~i~~l~~g~~~~v-----------------~ts~LD~ 191 (632)
.+|+.++. . ... .+++.++++.+++. ..+..||+|+++++ +|++||+
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~ 436 (500)
T TIGR02633 357 GKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDV 436 (500)
T ss_pred HHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCH
Confidence 22444321 0 011 23466777777663 34678999999888 3999999
Q ss_pred HHHHHHHHHHHHHh-CCceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhH
Q 047286 192 QSERIVQAAMVKLV-TNQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDE 242 (632)
Q Consensus 192 ~~~~~i~~~l~~~~-~~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~e 242 (632)
.+++.+++.++++. ++.|+|++||+++.+.. ||++++|++|+++..++.++
T Consensus 437 ~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 489 (500)
T TIGR02633 437 GAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHA 489 (500)
T ss_pred hHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcccc
Confidence 99999999999885 47899999999998865 99999999999998775443
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-18 Score=173.82 Aligned_cols=121 Identities=36% Similarity=0.420 Sum_probs=97.8
Q ss_pred cccccEEEeeEEEEEecCCCChHHHHHhhhcCCChhhh------------cHHH--------------------------
Q 047286 497 TVRGDIVFEHTVALVGENGNGKSTVISLAERFHNPEQV------------IYSW-------------------------- 538 (632)
Q Consensus 497 ~~~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~~------------~~~~-------------------------- 538 (632)
++.-+|.-+++++|+||+|||||||+++|.|++.|++. ....
T Consensus 21 ~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~~~~~ 100 (229)
T cd03254 21 DINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLG 100 (229)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhhHHHHHHhcc
Confidence 33445556679999999999999999999999876320 0000
Q ss_pred -------H------HHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh------------------------
Q 047286 539 -------I------IIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY------------------------ 581 (632)
Q Consensus 539 -------~------~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~------------------------ 581 (632)
. ..++.+++..+|.|+++.++....+||||||||++||||+..
T Consensus 101 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~ 180 (229)
T cd03254 101 RPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQE 180 (229)
T ss_pred CCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHH
Confidence 0 013346778888999999999999999999999999999554
Q ss_pred -----------hccccchhhhhcCCEEEEEeCCeEeeecChHHHhcc
Q 047286 582 -----------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKI 617 (632)
Q Consensus 582 -----------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~ 617 (632)
+++||.+..+..||+|++|++|++++.|+.++++.+
T Consensus 181 ~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~ 227 (229)
T cd03254 181 ALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227 (229)
T ss_pred HHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence 678999999989999999999999999999998875
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.2e-19 Score=171.87 Aligned_cols=121 Identities=26% Similarity=0.335 Sum_probs=85.7
Q ss_pred ccccEEEeeEEEEEecCCCChHHHHHhhhcCCChhh--------hcH-HH-----------------H---------H--
Q 047286 498 VRGDIVFEHTVALVGENGNGKSTVISLAERFHNPEQ--------VIY-SW-----------------I---------I-- 540 (632)
Q Consensus 498 ~~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~--------~~~-~~-----------------~---------~-- 540 (632)
++-+|+-++.+|+.||||||||||+++|.|+..|++ .+. .. + +
T Consensus 21 i~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAF 100 (345)
T COG1118 21 ISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAF 100 (345)
T ss_pred ceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhcccchHHhhhhh
Confidence 344566667899999999999999999999988864 000 00 0 0
Q ss_pred ---------------HHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh------------------------
Q 047286 541 ---------------IKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY------------------------ 581 (632)
Q Consensus 541 ---------------~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~------------------------ 581 (632)
..+++.+.-. .++-.-.....+||||||||+|||||+.-
T Consensus 101 Gl~~~~~~p~~~~~r~rv~elL~lv--qL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~ 178 (345)
T COG1118 101 GLKVRKERPSEAEIRARVEELLRLV--QLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRR 178 (345)
T ss_pred cccccccCCChhhHHHHHHHHHHHh--cccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHH
Confidence 0111211110 11111123467999999999999999321
Q ss_pred -------------hccccchh-hhhcCCEEEEEeCCeEeeecChHHHhccCCc
Q 047286 582 -------------CGCGSPPY-HYKNADITSVVKNGVIAEKGRHDALMKITDG 620 (632)
Q Consensus 582 -------------~~iahrl~-~~~~aD~I~vl~~G~ive~G~h~eL~~~~~g 620 (632)
+.+||... +.+.||||+||++|+|++.|+.+|...+++.
T Consensus 179 wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~~P~s 231 (345)
T COG1118 179 WLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHPAS 231 (345)
T ss_pred HHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhcCCCc
Confidence 78999866 4578999999999999999999999876543
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.1e-18 Score=162.07 Aligned_cols=108 Identities=23% Similarity=0.413 Sum_probs=85.2
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHH------------------hhcceEEEcccCccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEA------------------EQEKIGLVSKEPIFLFCDFNEGQ 146 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~------------------~r~~i~~v~Q~~~~~~~~~~~~~ 146 (632)
.++|++++||+++|+||||||||||+++|.|.. .|.. .++.++|++|
T Consensus 18 ~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~--~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q------------- 82 (163)
T cd03216 18 GVSLSVRRGEVHALLGENGAGKSTLMKILSGLY--KPDSGEILVDGKEVSFASPRDARRAGIAMVYQ------------- 82 (163)
T ss_pred eeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCeEEEECCEECCcCCHHHHHhcCeEEEEe-------------
Confidence 389999999999999999999999999998553 2211 1222333333
Q ss_pred ccccCCCCCCHHHHHHHHHHccchhhHhhCCccccccc-----------------ccCCCCHHHHHHHHHHHHHHh-CCc
Q 047286 147 YIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV-----------------ATNAVDAQSERIVQAAMVKLV-TNQ 208 (632)
Q Consensus 147 ~i~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l~~~~-~~~ 208 (632)
||.|+.+++ +|++||+.+++.+.+.++++. ++.
T Consensus 83 -----------------------------LS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~ 133 (163)
T cd03216 83 -----------------------------LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGV 133 (163)
T ss_pred -----------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCC
Confidence 455544444 489999999999999999885 478
Q ss_pred eEEEEecCchHHhh-cCeEEEEeCCeEEE
Q 047286 209 TVVIVANCLITIRN-ADCIIMVSKGKIVE 236 (632)
Q Consensus 209 tviiitH~~~~~~~-aD~i~vl~~G~i~~ 236 (632)
|+|++||++..+.. ||++++|++|++++
T Consensus 134 tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 134 AVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred EEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 99999999998765 99999999999875
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.2e-18 Score=154.46 Aligned_cols=168 Identities=18% Similarity=0.314 Sum_probs=126.3
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC---------------cHHhhcceEEEcccCcc-ccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA---------------PEAEQEKIGLVSKEPIF-LFCDFNEGQYI 148 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~---------------~~~~r~~i~~v~Q~~~~-~~~~~~~~~~i 148 (632)
.+||++++|+.+||+|.||||||||.|+|.|+.... .....++|-+++|+|.- |+..++....+
T Consensus 31 ~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiL 110 (267)
T COG4167 31 PVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQIL 110 (267)
T ss_pred ceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhhhhhHh
Confidence 399999999999999999999999999998653221 11234679999999852 22222111000
Q ss_pred ccC-------CCCCCHHHHHHHHHHccchh-----hHhhCCcccccccc-----------------cCCCCHHHHHHHHH
Q 047286 149 PYG-------KQNASDEHIRPAVQLANAEK-----SIDKLPLGLDTVVA-----------------TNAVDAQSERIVQA 199 (632)
Q Consensus 149 ~~~-------~~~~~~~~~~~~~~~~~l~~-----~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~ 199 (632)
... .+....+++.+.++.+++-. .+..++.|.+++|+ .++||...+.++.+
T Consensus 111 d~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~N 190 (267)
T COG4167 111 DFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLIN 190 (267)
T ss_pred cchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHH
Confidence 000 01123456778888888643 46677888888884 67999999999999
Q ss_pred HHHHHh--CCceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcCCCcHHH
Q 047286 200 AMVKLV--TNQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIEDPEGAYS 252 (632)
Q Consensus 200 ~l~~~~--~~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~~~~~~~ 252 (632)
...++. .|.+.|.|+.++..+++ +|+|+||++|+++|.|++.+++..|.....
T Consensus 191 L~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~a~P~~~~T 246 (267)
T COG4167 191 LMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLASPLHELT 246 (267)
T ss_pred HHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCChhhhhcCCccHHH
Confidence 998885 37899999999999998 999999999999999999999988765443
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.6e-19 Score=169.20 Aligned_cols=108 Identities=26% Similarity=0.306 Sum_probs=77.7
Q ss_pred cccccEEEeeEEEEEecCCCChHHHHHhhhcCCChhhhc------------------------HHHH-------------
Q 047286 497 TVRGDIVFEHTVALVGENGNGKSTVISLAERFHNPEQVI------------------------YSWI------------- 539 (632)
Q Consensus 497 ~~~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~~~------------------------~~~~------------- 539 (632)
+++-+|.-+++|+||||||||||||++++.|+.+|++.. ..|+
T Consensus 21 ~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~ 100 (248)
T COG1116 21 DINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELR 100 (248)
T ss_pred cceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhheehhhcc
Confidence 344466667799999999999999999999998885410 0111
Q ss_pred -------HHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh-------------------------------
Q 047286 540 -------IIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY------------------------------- 581 (632)
Q Consensus 540 -------~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~------------------------------- 581 (632)
...+.+++... |+.---.....+||||||||+|||||+..
T Consensus 101 ~~~~~e~~~~a~~~L~~V--gL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~ 178 (248)
T COG1116 101 GKSKAEARERAKELLELV--GLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWE 178 (248)
T ss_pred ccchHhHHHHHHHHHHHc--CCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHH
Confidence 11233444432 44444455678999999999999999543
Q ss_pred ------hccccchh-hhhcCCEEEEEeC--CeEe
Q 047286 582 ------CGCGSPPY-HYKNADITSVVKN--GVIA 606 (632)
Q Consensus 582 ------~~iahrl~-~~~~aD~I~vl~~--G~iv 606 (632)
+.|||..+ .+.-||||+||.+ |+|.
T Consensus 179 ~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~ 212 (248)
T COG1116 179 ETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIG 212 (248)
T ss_pred hhCCEEEEEeCCHHHHHhhhCEEEEecCCCccee
Confidence 78999865 4578999999999 5553
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.9e-18 Score=168.30 Aligned_cols=143 Identities=16% Similarity=0.217 Sum_probs=110.5
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC--------------cHHhhcceEEEcccCcccc-cccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA--------------PEAEQEKIGLVSKEPIFLF-CDFNEGQYIP 149 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~--------------~~~~r~~i~~v~Q~~~~~~-~~~~~~~~i~ 149 (632)
.+||+|++||+++|+|+||||||||+++|+|..... ....+++++|++|++.++. .++.+ |+.
T Consensus 18 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e--~l~ 95 (201)
T cd03231 18 GLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLE--NLR 95 (201)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccccccCCCcCHHH--HHH
Confidence 499999999999999999999999999998653211 1234678999999986543 34444 565
Q ss_pred cCCCCCCHHHHHHHHHHccchh----hHhhCCccccccc-----------------ccCCCCHHHHHHHHHHHHHHh-CC
Q 047286 150 YGKQNASDEHIRPAVQLANAEK----SIDKLPLGLDTVV-----------------ATNAVDAQSERIVQAAMVKLV-TN 207 (632)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~l~~----~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l~~~~-~~ 207 (632)
+.......+++.++++..++.+ ....||+|.++++ +|++||+.+++.+.+.|+++. ++
T Consensus 96 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g 175 (201)
T cd03231 96 FWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARG 175 (201)
T ss_pred hhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Confidence 5433335667788888887753 4567889988877 399999999999999998875 47
Q ss_pred ceEEEEecCchHHh-hcCeEEEE
Q 047286 208 QTVVIVANCLITIR-NADCIIMV 229 (632)
Q Consensus 208 ~tviiitH~~~~~~-~aD~i~vl 229 (632)
.|+|++||+...+. .|++++.+
T Consensus 176 ~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 176 GMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred CEEEEEecCchhhhhccceeEec
Confidence 89999999877664 58999876
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.6e-19 Score=164.64 Aligned_cols=123 Identities=24% Similarity=0.256 Sum_probs=85.2
Q ss_pred CcccccEEEeeEEEEEecCCCChHHHHHhhhcCCChhh-------------------hcHHHH-----------------
Q 047286 496 STVRGDIVFEHTVALVGENGNGKSTVISLAERFHNPEQ-------------------VIYSWI----------------- 539 (632)
Q Consensus 496 ~~~~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~-------------------~~~~~~----------------- 539 (632)
..+..+|.-+.++|++|||||||||+++.+.|+.|..+ ++...+
T Consensus 24 ~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp~S 103 (253)
T COG1117 24 KDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMS 103 (253)
T ss_pred ccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCCCch
Confidence 34445666667899999999999999999999876521 111111
Q ss_pred ----------HH-----HHHHHHhc------CCCccCcccccCCCCCChHHHHHHHHHHHHhh-----------------
Q 047286 540 ----------II-----KCTNFIAS------LPQGSDLNVGERGLQLSGGLKQRIARTRARNY----------------- 581 (632)
Q Consensus 540 ----------~~-----~~~~~i~~------lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~----------------- 581 (632)
+. .+++.++. |=+-..-.+.+.+..|||||+||+|||||+--
T Consensus 104 IydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPI 183 (253)
T COG1117 104 IYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPI 183 (253)
T ss_pred HHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCch
Confidence 00 11111111 00111123446788899999999999999321
Q ss_pred ------------------hccccchhh-hhcCCEEEEEeCCeEeeecChHHHhccC
Q 047286 582 ------------------CGCGSPPYH-YKNADITSVVKNGVIAEKGRHDALMKIT 618 (632)
Q Consensus 582 ------------------~~iahrl~~-~~~aD~I~vl~~G~ive~G~h~eL~~~~ 618 (632)
+++||.+.- .|-+|+..++..|++||.|.-+++-.++
T Consensus 184 sT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF~~P 239 (253)
T COG1117 184 STLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFTNP 239 (253)
T ss_pred hHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhhcCc
Confidence 788999764 4679999999999999999999998763
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-18 Score=182.36 Aligned_cols=120 Identities=22% Similarity=0.227 Sum_probs=88.0
Q ss_pred cEEEeeEEEEEecCCCChHHHHHhhhcCCChhhh--------------------------------cH------HHH---
Q 047286 501 DIVFEHTVALVGENGNGKSTVISLAERFHNPEQV--------------------------------IY------SWI--- 539 (632)
Q Consensus 501 ~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~~--------------------------------~~------~~~--- 539 (632)
+|.-++.++|+||||||||||+++|.|+++|++- .. ...
T Consensus 28 ~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~ 107 (351)
T PRK11432 28 TIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLG 107 (351)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcC
Confidence 4444568999999999999999999999988530 00 000
Q ss_pred ------HHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh--------------------------------
Q 047286 540 ------IIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY-------------------------------- 581 (632)
Q Consensus 540 ------~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~-------------------------------- 581 (632)
...+.+.+..+ |+..........||||||||+|||||+..
T Consensus 108 ~~~~~~~~~v~~~l~~~--gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~ 185 (351)
T PRK11432 108 VPKEERKQRVKEALELV--DLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQ 185 (351)
T ss_pred CCHHHHHHHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh
Confidence 00111222222 44433455667999999999999999654
Q ss_pred -----hccccchhhh-hcCCEEEEEeCCeEeeecChHHHhccCCchh
Q 047286 582 -----CGCGSPPYHY-KNADITSVVKNGVIAEKGRHDALMKITDGTY 622 (632)
Q Consensus 582 -----~~iahrl~~~-~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y 622 (632)
+++||.++.+ .-||+|+||++|+|++.|+++++.+++...|
T Consensus 186 ~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p~~~~ 232 (351)
T PRK11432 186 FNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPASRF 232 (351)
T ss_pred cCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCchH
Confidence 7889999876 5699999999999999999999998754433
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=99.76 E-value=2e-18 Score=195.54 Aligned_cols=158 Identities=18% Similarity=0.262 Sum_probs=123.2
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC---------------cHHhhcceEEEcccCcccc-ccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA---------------PEAEQEKIGLVSKEPIFLF-CDFNEGQYI 148 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~---------------~~~~r~~i~~v~Q~~~~~~-~~~~~~~~i 148 (632)
++|+++++||+++|+||||||||||+++|.|..... ....++.++||+|++.++. .++.+ |+
T Consensus 43 ~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e--~l 120 (617)
T TIGR00955 43 NVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVRE--HL 120 (617)
T ss_pred CCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHHH--HH
Confidence 499999999999999999999999999998643211 1235678999999998664 36655 56
Q ss_pred ccCCC-----CCC----HHHHHHHHHHccchh----hH------hhCCccccccc-----------------ccCCCCHH
Q 047286 149 PYGKQ-----NAS----DEHIRPAVQLANAEK----SI------DKLPLGLDTVV-----------------ATNAVDAQ 192 (632)
Q Consensus 149 ~~~~~-----~~~----~~~~~~~~~~~~l~~----~i------~~l~~g~~~~v-----------------~ts~LD~~ 192 (632)
.++.. ... .++++++++..++.+ .+ ..+|+|.++++ +|+|||+.
T Consensus 121 ~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~ 200 (617)
T TIGR00955 121 MFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSF 200 (617)
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHH
Confidence 54311 111 234667777776643 23 25889998888 39999999
Q ss_pred HHHHHHHHHHHHhC-CceEEEEecCch-H-HhhcCeEEEEeCCeEEEecChhHHh
Q 047286 193 SERIVQAAMVKLVT-NQTVVIVANCLI-T-IRNADCIIMVSKGKIVEKGTHDELI 244 (632)
Q Consensus 193 ~~~~i~~~l~~~~~-~~tviiitH~~~-~-~~~aD~i~vl~~G~i~~~g~~~el~ 244 (632)
++..+.+.++++.+ ++|+|+++|+++ . .+.+|++++|++|++++.|+++++.
T Consensus 201 ~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~ 255 (617)
T TIGR00955 201 MAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAV 255 (617)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHH
Confidence 99999999999864 789999999985 3 4679999999999999999999874
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.8e-18 Score=182.11 Aligned_cols=123 Identities=21% Similarity=0.205 Sum_probs=90.0
Q ss_pred ccccEEEeeEEEEEecCCCChHHHHHhhhcCCChhhh------------cHH--------------------HHH-----
Q 047286 498 VRGDIVFEHTVALVGENGNGKSTVISLAERFHNPEQV------------IYS--------------------WII----- 540 (632)
Q Consensus 498 ~~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~~------------~~~--------------------~~~----- 540 (632)
++-+|.-++.+||+||||||||||+++|.|+++|++. ... .-+
T Consensus 23 vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~ 102 (356)
T PRK11650 23 IDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLK 102 (356)
T ss_pred eeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHh
Confidence 3345555668999999999999999999999887430 000 000
Q ss_pred ----------HHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh-----------------------------
Q 047286 541 ----------IKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY----------------------------- 581 (632)
Q Consensus 541 ----------~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~----------------------------- 581 (632)
..+.+.+..+ |++........+||||||||+|||||+..
T Consensus 103 ~~~~~~~~~~~~~~~~l~~~--gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l 180 (356)
T PRK11650 103 IRGMPKAEIEERVAEAARIL--ELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRL 180 (356)
T ss_pred hcCCCHHHHHHHHHHHHHHc--CChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 0112222222 45544555667999999999999999544
Q ss_pred --------hccccchhhh-hcCCEEEEEeCCeEeeecChHHHhccCCchh
Q 047286 582 --------CGCGSPPYHY-KNADITSVVKNGVIAEKGRHDALMKITDGTY 622 (632)
Q Consensus 582 --------~~iahrl~~~-~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y 622 (632)
+++||.+..+ +.||+|++|++|+|++.|+.+|+++++...|
T Consensus 181 ~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p~~~~ 230 (356)
T PRK11650 181 HRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPASTF 230 (356)
T ss_pred HHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCCccHH
Confidence 7889998765 5799999999999999999999998644344
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.5e-18 Score=171.92 Aligned_cols=153 Identities=21% Similarity=0.295 Sum_probs=105.1
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHHh--hc-ceEEEcccCcccccccccccccccCCC--CCC---
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAE--QE-KIGLVSKEPIFLFCDFNEGQYIPYGKQ--NAS--- 156 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~~--r~-~i~~v~Q~~~~~~~~~~~~~~i~~~~~--~~~--- 156 (632)
.+||+|++|++++|+||||||||||+++|.|+......++ .. .+....+... +....+..+|+.+... ...
T Consensus 40 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~-~~~~~tv~enl~~~~~~~~~~~~~ 118 (224)
T cd03220 40 DVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGG-FNPELTGRENIYLNGRLLGLSRKE 118 (224)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhccccc-CCCCCcHHHHHHHHHHHcCCCHHH
Confidence 3999999999999999999999999999996532211110 00 0111111111 2222222234443211 111
Q ss_pred -HHHHHHHHHHccch----hhHhhCCccccccc-----------------ccCCCCHHHHHHHHHHHHHHh-CCceEEEE
Q 047286 157 -DEHIRPAVQLANAE----KSIDKLPLGLDTVV-----------------ATNAVDAQSERIVQAAMVKLV-TNQTVVIV 213 (632)
Q Consensus 157 -~~~~~~~~~~~~l~----~~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l~~~~-~~~tviii 213 (632)
.+++.++++..++. ..+..||+|.++++ +|++||+.+++.+.+.++++. ++.|+|++
T Consensus 119 ~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~ 198 (224)
T cd03220 119 IDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILV 198 (224)
T ss_pred HHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 23455666666654 35678899998877 399999999999999999875 46899999
Q ss_pred ecCchHHh-hcCeEEEEeCCeEEEec
Q 047286 214 ANCLITIR-NADCIIMVSKGKIVEKG 238 (632)
Q Consensus 214 tH~~~~~~-~aD~i~vl~~G~i~~~g 238 (632)
||+++.+. .||++++|++|++++.|
T Consensus 199 sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 199 SHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred eCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999876 49999999999998764
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.1e-18 Score=179.93 Aligned_cols=122 Identities=20% Similarity=0.217 Sum_probs=89.2
Q ss_pred cEEEeeEEEEEecCCCChHHHHHhhhcCCCh----hh---------h---cHHHH-------------------------
Q 047286 501 DIVFEHTVALVGENGNGKSTVISLAERFHNP----EQ---------V---IYSWI------------------------- 539 (632)
Q Consensus 501 ~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~----~~---------~---~~~~~------------------------- 539 (632)
+|.-++++||||+||||||||+++|.|+++| ++ + .....
T Consensus 29 ~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v 108 (326)
T PRK11022 29 SVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTV 108 (326)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCH
Confidence 4555568999999999999999999999873 11 0 00000
Q ss_pred ---H----------------HHHHHHHhcCCCccC---cccccCCCCCChHHHHHHHHHHHHhh----------------
Q 047286 540 ---I----------------IKCTNFIASLPQGSD---LNVGERGLQLSGGLKQRIARTRARNY---------------- 581 (632)
Q Consensus 540 ---~----------------~~~~~~i~~lp~g~d---t~vge~G~~LSgGQrQRiaiARA~~~---------------- 581 (632)
+ ..+.+.+..+ |++ ........+||||||||++||||+..
T Consensus 109 ~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~--gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~ 186 (326)
T PRK11022 109 GFQIMEAIKVHQGGNKKTRRQRAIDLLNQV--GIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDV 186 (326)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHC--CCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Confidence 0 0111222222 342 23456778999999999999999544
Q ss_pred ---------------------hccccchhhh-hcCCEEEEEeCCeEeeecChHHHhccCCchhHH
Q 047286 582 ---------------------CGCGSPPYHY-KNADITSVVKNGVIAEKGRHDALMKITDGTYAS 624 (632)
Q Consensus 582 ---------------------~~iahrl~~~-~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~ 624 (632)
+++||.++.+ +.||+|+||++|+|+|.|+.+++++++...|.+
T Consensus 187 ~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~g~~~~~~~~p~hpyt~ 251 (326)
T PRK11022 187 TIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIFRAPRHPYTQ 251 (326)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhhCCCChHHH
Confidence 7889999988 579999999999999999999999765555654
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.8e-18 Score=171.14 Aligned_cols=113 Identities=25% Similarity=0.221 Sum_probs=92.1
Q ss_pred ccccEEEeeEEEEEecCCCChHHHHHhhhcCCChhhh------------cHHH---------------------------
Q 047286 498 VRGDIVFEHTVALVGENGNGKSTVISLAERFHNPEQV------------IYSW--------------------------- 538 (632)
Q Consensus 498 ~~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~~------------~~~~--------------------------- 538 (632)
+.-+|.-++.+||+||+|||||||+++|.|++.|.+. ....
T Consensus 23 i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~ 102 (221)
T cd03244 23 ISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFG 102 (221)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCccccchHHHHhCcCC
Confidence 3334555568999999999999999999999876420 0000
Q ss_pred -----------HHHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh--------------------------
Q 047286 539 -----------IIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY-------------------------- 581 (632)
Q Consensus 539 -----------~~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~-------------------------- 581 (632)
....+.+++..+|.|+++..++.+.+||||||||++||||+..
T Consensus 103 ~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l 182 (221)
T cd03244 103 EYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTI 182 (221)
T ss_pred CCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHH
Confidence 0113457888899999999999999999999999999999654
Q ss_pred ---------hccccchhhhhcCCEEEEEeCCeEeeecC
Q 047286 582 ---------CGCGSPPYHYKNADITSVVKNGVIAEKGR 610 (632)
Q Consensus 582 ---------~~iahrl~~~~~aD~I~vl~~G~ive~G~ 610 (632)
++++|++..+..||+|++|++|++++.|+
T Consensus 183 ~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 183 REAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred HHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 68899999999999999999999999886
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.4e-18 Score=170.53 Aligned_cols=157 Identities=15% Similarity=0.180 Sum_probs=112.9
Q ss_pred EEEEee-----CCCEEEEEcCCCchHHHHHHHHHhCCCCCcHH--hh-cceEEEcccCcc-cccccccccccccCCCC--
Q 047286 86 FLQHVP-----SGTTVALVGQSGSGKSTVINLVESFRFYAPEA--EQ-EKIGLVSKEPIF-LFCDFNEGQYIPYGKQN-- 154 (632)
Q Consensus 86 ~~~~i~-----~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~--~r-~~i~~v~Q~~~~-~~~~~~~~~~i~~~~~~-- 154 (632)
++++++ +||+++|+||||||||||+++|.|+....... +. ..++|++|++.. +..++.+ ++.+....
T Consensus 13 ~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e--~l~~~~~~~~ 90 (246)
T cd03237 13 FTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRD--LLSSITKDFY 90 (246)
T ss_pred EEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHH--HHHHHhhhcc
Confidence 677775 79999999999999999999999653322111 11 279999999864 3445544 44332111
Q ss_pred CCHHHHHHHHHHccch----hhHhhCCcccccccc-----------------cCCCCHHHHHHHHHHHHHHhC--CceEE
Q 047286 155 ASDEHIRPAVQLANAE----KSIDKLPLGLDTVVA-----------------TNAVDAQSERIVQAAMVKLVT--NQTVV 211 (632)
Q Consensus 155 ~~~~~~~~~~~~~~l~----~~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~~l~~~~~--~~tvi 211 (632)
...+...++++.+++. ..+..||+|..++++ |++||+.++..+.+.|+++.+ ++|+|
T Consensus 91 ~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii 170 (246)
T cd03237 91 THPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAF 170 (246)
T ss_pred ccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 1123345677777665 346789999988873 999999999999999999853 78999
Q ss_pred EEecCchHHhh-cCeEEEEeCCeEE--EecChhHHh
Q 047286 212 IVANCLITIRN-ADCIIMVSKGKIV--EKGTHDELI 244 (632)
Q Consensus 212 iitH~~~~~~~-aD~i~vl~~G~i~--~~g~~~el~ 244 (632)
++||+++.+.. ||++++|+++..+ ..+++.++.
T Consensus 171 ivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~ 206 (246)
T cd03237 171 VVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLR 206 (246)
T ss_pred EEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHH
Confidence 99999998875 9999999765443 345555543
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.8e-18 Score=171.54 Aligned_cols=116 Identities=23% Similarity=0.264 Sum_probs=89.0
Q ss_pred ccEEEeeEEEEEecCCCChHHHHHhhhcCCChhh---------h---cHHHH---------------------H------
Q 047286 500 GDIVFEHTVALVGENGNGKSTVISLAERFHNPEQ---------V---IYSWI---------------------I------ 540 (632)
Q Consensus 500 g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~---~~~~~---------------------~------ 540 (632)
-+|.-++++||+||+|||||||+++|.|+++|++ + ..... +
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~ 101 (236)
T TIGR03864 22 FTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAAL 101 (236)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHh
Confidence 3455566999999999999999999999988743 0 00000 0
Q ss_pred ---------HHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh------------------------------
Q 047286 541 ---------IKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY------------------------------ 581 (632)
Q Consensus 541 ---------~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~------------------------------ 581 (632)
..+.+++..+ |++........+||||||||++||||+..
T Consensus 102 ~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 179 (236)
T TIGR03864 102 HGLSRAEARERIAALLARL--GLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALC 179 (236)
T ss_pred cCCCHHHHHHHHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHH
Confidence 0122334333 55555666778999999999999999544
Q ss_pred -------hccccchhhhhcCCEEEEEeCCeEeeecChHHHhcc
Q 047286 582 -------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKI 617 (632)
Q Consensus 582 -------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~ 617 (632)
+++||++..+..||+|++|++|++++.|+++++.+.
T Consensus 180 ~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 180 RDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred HhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 688999999888999999999999999999999874
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.9e-18 Score=180.23 Aligned_cols=128 Identities=23% Similarity=0.262 Sum_probs=91.5
Q ss_pred ccccEEEeeEEEEEecCCCChHHHHHhhhcCCChhh---------hc---HHH----H---------------------H
Q 047286 498 VRGDIVFEHTVALVGENGNGKSTVISLAERFHNPEQ---------VI---YSW----I---------------------I 540 (632)
Q Consensus 498 ~~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~~---~~~----~---------------------~ 540 (632)
++-+|+-++++||+||||||||||+++|.|++.|++ +. ... . +
T Consensus 24 vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni 103 (343)
T PRK11153 24 VSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNV 103 (343)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHH
Confidence 333555567999999999999999999999988743 00 000 0 0
Q ss_pred ---------------HHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh------------------------
Q 047286 541 ---------------IKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY------------------------ 581 (632)
Q Consensus 541 ---------------~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~------------------------ 581 (632)
..+.+.+..+ |++........+||||||||++||||+..
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~l~~~--gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~ 181 (343)
T PRK11153 104 ALPLELAGTPKAEIKARVTELLELV--GLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILE 181 (343)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 0111223322 44444455667899999999999999554
Q ss_pred -------------hccccchhhhhc-CCEEEEEeCCeEeeecChHHHhccCCch-hHHHHH
Q 047286 582 -------------CGCGSPPYHYKN-ADITSVVKNGVIAEKGRHDALMKITDGT-YASLTA 627 (632)
Q Consensus 582 -------------~~iahrl~~~~~-aD~I~vl~~G~ive~G~h~eL~~~~~g~-y~~l~~ 627 (632)
+++||+++.+.. ||+|++|++|+|++.|++++++..+... ++.++.
T Consensus 182 ~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 242 (343)
T PRK11153 182 LLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSHPKHPLTREFIQ 242 (343)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCcHHHHHHHh
Confidence 688999998864 9999999999999999999998753333 334443
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.2e-18 Score=194.16 Aligned_cols=156 Identities=19% Similarity=0.271 Sum_probs=116.5
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHHh----hcceEEEcccCcc-cccccccccccccCCCCCCHHHH
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAE----QEKIGLVSKEPIF-LFCDFNEGQYIPYGKQNASDEHI 160 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~~----r~~i~~v~Q~~~~-~~~~~~~~~~i~~~~~~~~~~~~ 160 (632)
+||+|++|++++|+||||||||||+++|.|....+...+ ..++||++|++.. +.......+++.........+++
T Consensus 331 isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 410 (638)
T PRK10636 331 IKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLAPQELEQKL 410 (638)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCccchHHHHHHHhCchhhHHHH
Confidence 999999999999999999999999999996543222111 2369999997521 12111111122111112234567
Q ss_pred HHHHHHccch-----hhHhhCCccccccc-----------------ccCCCCHHHHHHHHHHHHHHhCCceEEEEecCch
Q 047286 161 RPAVQLANAE-----KSIDKLPLGLDTVV-----------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLI 218 (632)
Q Consensus 161 ~~~~~~~~l~-----~~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~ 218 (632)
.++++..++. ..+..||+|.++++ +|++||+.+...+.+.|.++ +.|+|+|||+..
T Consensus 411 ~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~gtvi~vSHd~~ 488 (638)
T PRK10636 411 RDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--EGALVVVSHDRH 488 (638)
T ss_pred HHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CCeEEEEeCCHH
Confidence 7788887763 35788999999888 39999999999999999987 359999999999
Q ss_pred HHhh-cCeEEEEeCCeEE-EecChhHH
Q 047286 219 TIRN-ADCIIMVSKGKIV-EKGTHDEL 243 (632)
Q Consensus 219 ~~~~-aD~i~vl~~G~i~-~~g~~~el 243 (632)
.+.. ||+|++|++|+++ ..|++++.
T Consensus 489 ~~~~~~d~i~~l~~G~i~~~~g~~~~~ 515 (638)
T PRK10636 489 LLRSTTDDLYLVHDGKVEPFDGDLEDY 515 (638)
T ss_pred HHHHhCCEEEEEECCEEEEcCCCHHHH
Confidence 8865 9999999999997 67888775
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.6e-18 Score=168.06 Aligned_cols=145 Identities=11% Similarity=0.176 Sum_probs=109.1
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCc------------HHhhcceEEEcccCccccc-ccccccccccC
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAP------------EAEQEKIGLVSKEPIFLFC-DFNEGQYIPYG 151 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~------------~~~r~~i~~v~Q~~~~~~~-~~~~~~~i~~~ 151 (632)
.+||++++||+++|+||||||||||+++|.|...... ...++.++|++|++.++.. ++.+ |+.+.
T Consensus 29 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e--~l~~~ 106 (214)
T PRK13543 29 PLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLE--NLHFL 106 (214)
T ss_pred cceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHH--HHHHH
Confidence 3999999999999999999999999999986532110 1124569999999876543 4444 44332
Q ss_pred C---CCCCHHHHHHHHHHccc----hhhHhhCCcccccccc-----------------cCCCCHHHHHHHHHHHHHHh-C
Q 047286 152 K---QNASDEHIRPAVQLANA----EKSIDKLPLGLDTVVA-----------------TNAVDAQSERIVQAAMVKLV-T 206 (632)
Q Consensus 152 ~---~~~~~~~~~~~~~~~~l----~~~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~~l~~~~-~ 206 (632)
. .....+...++++..++ +..+..||.|.+++++ |++||+.+++.+.+.++++. +
T Consensus 107 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 186 (214)
T PRK13543 107 CGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRG 186 (214)
T ss_pred HHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC
Confidence 1 11123455667777765 4556789999988773 89999999999999998874 4
Q ss_pred CceEEEEecCchHHhh-cCeEEEEeC
Q 047286 207 NQTVVIVANCLITIRN-ADCIIMVSK 231 (632)
Q Consensus 207 ~~tviiitH~~~~~~~-aD~i~vl~~ 231 (632)
+.|+|++||+++.+.. ||++++++.
T Consensus 187 ~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 187 GGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred CCEEEEEecChhhhhhhcceEEEEee
Confidence 6899999999998865 999999864
|
|
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.6e-18 Score=155.82 Aligned_cols=127 Identities=24% Similarity=0.282 Sum_probs=90.1
Q ss_pred cEEEeeEEEEEecCCCChHHHHHhhhcCCChhh--------------------------------hcHHHHHH-------
Q 047286 501 DIVFEHTVALVGENGNGKSTVISLAERFHNPEQ--------------------------------VIYSWIII------- 541 (632)
Q Consensus 501 ~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~--------------------------------~~~~~~~~------- 541 (632)
.++-++++||+|.+|||||||+++|.|..+|++ ++....+-
T Consensus 35 tL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL 114 (267)
T COG4167 35 TLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPL 114 (267)
T ss_pred EecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhhhhhHhcchh
Confidence 445567999999999999999999999998854 00000000
Q ss_pred -------------HHH---HHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh------------------------
Q 047286 542 -------------KCT---NFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY------------------------ 581 (632)
Q Consensus 542 -------------~~~---~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~------------------------ 581 (632)
.+. ..|.-+|+--+. ....||-|||||+|+|||++.
T Consensus 115 ~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~----~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~N 190 (267)
T COG4167 115 RLNTDLEPEQRRKQIFETLRMVGLLPDHANY----YPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLIN 190 (267)
T ss_pred hhcccCChHHHHHHHHHHHHHhccCcccccc----chhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHH
Confidence 011 122233332221 235699999999999999654
Q ss_pred -------------hccccchhhhhc-CCEEEEEeCCeEeeecChHHHhccC-CchhHHHHHhhhc
Q 047286 582 -------------CGCGSPPYHYKN-ADITSVVKNGVIAEKGRHDALMKIT-DGTYASLTALHMS 631 (632)
Q Consensus 582 -------------~~iahrl~~~~~-aD~I~vl~~G~ive~G~h~eL~~~~-~g~y~~l~~~~~~ 631 (632)
|.++..+-.|++ +|+|+||++|++||+|+..+++..+ ...-++|++++++
T Consensus 191 L~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~a~P~~~~TkRlieShFg 255 (267)
T COG4167 191 LMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLASPLHELTKRLIESHFG 255 (267)
T ss_pred HHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCChhhhhcCCccHHHHHHHHHHhc
Confidence 566666777775 9999999999999999999998753 3456778877654
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.9e-18 Score=177.94 Aligned_cols=122 Identities=22% Similarity=0.162 Sum_probs=88.2
Q ss_pred cEEEeeEEEEEecCCCChHHHHHhhhcCCChhh---------h---cHHH------------------H-----H-HHH-
Q 047286 501 DIVFEHTVALVGENGNGKSTVISLAERFHNPEQ---------V---IYSW------------------I-----I-IKC- 543 (632)
Q Consensus 501 ~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~---~~~~------------------~-----~-~~~- 543 (632)
+|.-++++||||+||||||||+++|+|+++|++ + .... + + .++
T Consensus 43 ~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~ 122 (331)
T PRK15079 43 RLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIA 122 (331)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHH
Confidence 455556999999999999999999999987743 0 0000 0 0 000
Q ss_pred -------------------HHHHhcCCCccC-cccccCCCCCChHHHHHHHHHHHHhh----------------------
Q 047286 544 -------------------TNFIASLPQGSD-LNVGERGLQLSGGLKQRIARTRARNY---------------------- 581 (632)
Q Consensus 544 -------------------~~~i~~lp~g~d-t~vge~G~~LSgGQrQRiaiARA~~~---------------------- 581 (632)
.+.+..+ |++ ........+||||||||++||||+..
T Consensus 123 ~~l~~~~~~~~~~~~~~~~~~~l~~v--gl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i 200 (331)
T PRK15079 123 EPLRTYHPKLSRQEVKDRVKAMMLKV--GLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQV 200 (331)
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHc--CCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHH
Confidence 0111111 231 12345567899999999999999544
Q ss_pred ---------------hccccchhhhhc-CCEEEEEeCCeEeeecChHHHhccCCchhHH
Q 047286 582 ---------------CGCGSPPYHYKN-ADITSVVKNGVIAEKGRHDALMKITDGTYAS 624 (632)
Q Consensus 582 ---------------~~iahrl~~~~~-aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~ 624 (632)
+++||.+..+.. ||+|+||++|+|+|.|+.+++++++...|.+
T Consensus 201 ~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive~g~~~~i~~~~~~py~~ 259 (331)
T PRK15079 201 VNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHNPLHPYTK 259 (331)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHcCCCCHHHH
Confidence 788999999975 9999999999999999999999764445654
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.5e-18 Score=170.75 Aligned_cols=121 Identities=23% Similarity=0.273 Sum_probs=86.7
Q ss_pred ccEEEeeEEEEEecCCCChHHHHHhhhcCCChhh---------h---cH---HHH------------------H-HHH--
Q 047286 500 GDIVFEHTVALVGENGNGKSTVISLAERFHNPEQ---------V---IY---SWI------------------I-IKC-- 543 (632)
Q Consensus 500 g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~---~~---~~~------------------~-~~~-- 543 (632)
-+|.-++++||+||||||||||+++|.|+++|++ + .. ... + .++
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~ 100 (235)
T cd03261 21 LDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAF 100 (235)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHH
Confidence 3555567999999999999999999999988743 1 00 000 0 000
Q ss_pred -----------------HHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh-------------------------
Q 047286 544 -----------------TNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY------------------------- 581 (632)
Q Consensus 544 -----------------~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~------------------------- 581 (632)
.+.+..+ |+.........+||||||||++||||+..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~ 178 (235)
T cd03261 101 PLREHTRLSEEEIREIVLEKLEAV--GLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDL 178 (235)
T ss_pred HHhhccCCCHHHHHHHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHH
Confidence 0111111 33333334456899999999999999554
Q ss_pred ------------hccccchhhhh-cCCEEEEEeCCeEeeecChHHHhccCCchhH
Q 047286 582 ------------CGCGSPPYHYK-NADITSVVKNGVIAEKGRHDALMKITDGTYA 623 (632)
Q Consensus 582 ------------~~iahrl~~~~-~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~ 623 (632)
++++|.++.+. .||+|++|++|++++.|++++++.. ...|.
T Consensus 179 l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~ 232 (235)
T cd03261 179 IRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRAS-DDPLV 232 (235)
T ss_pred HHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcCC-CChhh
Confidence 68899999876 5999999999999999999999875 55453
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.7e-18 Score=174.80 Aligned_cols=154 Identities=18% Similarity=0.155 Sum_probs=94.9
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHh---CCCCCcHHhhcceEEEcccCcccccccccccccccCC--CCC-CHHH
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVES---FRFYAPEAEQEKIGLVSKEPIFLFCDFNEGQYIPYGK--QNA-SDEH 159 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~---~~~~~~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~--~~~-~~~~ 159 (632)
-++++..|..+++||+||+||||||++|.. -.+..+++.+..--...|+. ........+.+.-.. ... +.++
T Consensus 99 a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~~g~~t~~~~~~--l~~D~~~~dfl~~e~~l~~~~~l~e 176 (582)
T KOG0062|consen 99 ANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVRGDDTEALQSV--LESDTERLDFLAEEKELLAGLTLEE 176 (582)
T ss_pred CceeeecccccceeCCCCCcHHHHHHHHHhcCcCccCchhheeccchHHHhhh--hhccHHHHHHHHhhhhhhccchHHH
Confidence 677889999999999999999999999973 11222222222111111110 001100000000000 000 2233
Q ss_pred HHH-HHHHccchh-----hHhhCCccccccc-----------------ccCCCCHHHHHHHHHHHHHHhCCceEEEEecC
Q 047286 160 IRP-AVQLANAEK-----SIDKLPLGLDTVV-----------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANC 216 (632)
Q Consensus 160 ~~~-~~~~~~l~~-----~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l~~~~~~~tviiitH~ 216 (632)
+.. ++.-.+..+ .+.+|++|.+.++ +|+.||..+..-+.+.|..+. .|+++|+||
T Consensus 177 i~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~--~T~liVSHD 254 (582)
T KOG0062|consen 177 IYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWK--ITSLIVSHD 254 (582)
T ss_pred HHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhCC--ceEEEEecc
Confidence 333 555555443 4567889988777 399999999999988888864 899999999
Q ss_pred chHHhh-cCeEEEEeCCeEE-EecChhHH
Q 047286 217 LITIRN-ADCIIMVSKGKIV-EKGTHDEL 243 (632)
Q Consensus 217 ~~~~~~-aD~i~vl~~G~i~-~~g~~~el 243 (632)
-..+.. |..|+-+++-++- +.|++++.
T Consensus 255 r~FLn~V~tdIIH~~~~kL~~YkGN~~~F 283 (582)
T KOG0062|consen 255 RNFLNTVCTDIIHLENLKLDYYKGNYSQF 283 (582)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhcCcHHHH
Confidence 999976 8888888876552 33444443
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.4e-18 Score=180.79 Aligned_cols=120 Identities=22% Similarity=0.251 Sum_probs=87.6
Q ss_pred cEEEeeEEEEEecCCCChHHHHHhhhcCCChhhh------------c--------------------HHHHH--------
Q 047286 501 DIVFEHTVALVGENGNGKSTVISLAERFHNPEQV------------I--------------------YSWII-------- 540 (632)
Q Consensus 501 ~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~~------------~--------------------~~~~~-------- 540 (632)
+|.-+++++|+||||||||||+++|.|+++|++- . ...-+
T Consensus 36 ~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~ 115 (375)
T PRK09452 36 TINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQK 115 (375)
T ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhcC
Confidence 3444558999999999999999999999988430 0 00000
Q ss_pred -------HHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh--------------------------------
Q 047286 541 -------IKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY-------------------------------- 581 (632)
Q Consensus 541 -------~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~-------------------------------- 581 (632)
..+.+.+..+ |++........+||||||||+|||||+..
T Consensus 116 ~~~~~~~~~~~~~l~~~--~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~ 193 (375)
T PRK09452 116 TPAAEITPRVMEALRMV--QLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRK 193 (375)
T ss_pred CCHHHHHHHHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHh
Confidence 0111222222 44444555667899999999999999654
Q ss_pred -----hccccchhhh-hcCCEEEEEeCCeEeeecChHHHhccCCchh
Q 047286 582 -----CGCGSPPYHY-KNADITSVVKNGVIAEKGRHDALMKITDGTY 622 (632)
Q Consensus 582 -----~~iahrl~~~-~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y 622 (632)
|++||.+..+ ..||+|++|++|+|++.|+.++++.++...|
T Consensus 194 ~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p~~~~ 240 (375)
T PRK09452 194 LGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPKNLF 240 (375)
T ss_pred cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcccHH
Confidence 7889998875 5799999999999999999999998644333
|
|
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.1e-18 Score=193.80 Aligned_cols=158 Identities=25% Similarity=0.296 Sum_probs=122.8
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC---------------cHHh----hcceEEEcccCccccc-cccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA---------------PEAE----QEKIGLVSKEPIFLFC-DFNE 144 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~---------------~~~~----r~~i~~v~Q~~~~~~~-~~~~ 144 (632)
.+||++++||+++|+||||||||||+++|+|....+ ..+. ++.++|++|++.+|.. ++.+
T Consensus 26 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e 105 (648)
T PRK10535 26 GISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQ 105 (648)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCCCCHHH
Confidence 499999999999999999999999999998653211 1111 4679999999976643 4444
Q ss_pred ccccccCC-----C-CCCHHHHHHHHHHccchhh----HhhCCccccccc-----------------ccCCCCHHHHHHH
Q 047286 145 GQYIPYGK-----Q-NASDEHIRPAVQLANAEKS----IDKLPLGLDTVV-----------------ATNAVDAQSERIV 197 (632)
Q Consensus 145 ~~~i~~~~-----~-~~~~~~~~~~~~~~~l~~~----i~~l~~g~~~~v-----------------~ts~LD~~~~~~i 197 (632)
|+.+.. . ....++..+.++.+++.+. ...||.|+.+++ +|++||+.+++.+
T Consensus 106 --nl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l 183 (648)
T PRK10535 106 --NVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEV 183 (648)
T ss_pred --HHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHH
Confidence 454321 1 1113345667777777654 456778887776 3899999999999
Q ss_pred HHHHHHHh-CCceEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHh
Q 047286 198 QAAMVKLV-TNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELI 244 (632)
Q Consensus 198 ~~~l~~~~-~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~ 244 (632)
.+.++++. +++|++++||+++.++.||++++|++|+++++|+.++..
T Consensus 184 ~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 184 MAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 99999885 478999999999988889999999999999999998875
|
|
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=6e-18 Score=181.84 Aligned_cols=161 Identities=18% Similarity=0.285 Sum_probs=114.5
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHHh--hcceEEEcccCcccccccccccccccCC--CCCCH---
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAE--QEKIGLVSKEPIFLFCDFNEGQYIPYGK--QNASD--- 157 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~~--r~~i~~v~Q~~~~~~~~~~~~~~i~~~~--~~~~~--- 157 (632)
.+||++++|++++|+||||||||||+++|.|+.......+ ...-.++.+.+.+ ...++..+|+.+.. ...+.
T Consensus 42 nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~~~~l-~~~lTV~EnL~l~~~~~~~~~~e~ 120 (549)
T PRK13545 42 NISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGL-NGQLTGIENIELKGLMMGLTKEKI 120 (549)
T ss_pred eeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEecccc-CCCCcHHHHHHhhhhhcCCCHHHH
Confidence 3999999999999999999999999999996543221111 1111122333222 22222223554321 11222
Q ss_pred -HHHHHHHHHccchhh----HhhCCccccccc-----------------ccCCCCHHHHHHHHHHHHHHh-CCceEEEEe
Q 047286 158 -EHIRPAVQLANAEKS----IDKLPLGLDTVV-----------------ATNAVDAQSERIVQAAMVKLV-TNQTVVIVA 214 (632)
Q Consensus 158 -~~~~~~~~~~~l~~~----i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l~~~~-~~~tviiit 214 (632)
+++.++++.+++.+. +..||+|+.+++ +|++||+.+++.+.+.|+++. +++|+|++|
T Consensus 121 ~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVS 200 (549)
T PRK13545 121 KEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFIS 200 (549)
T ss_pred HHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEE
Confidence 234566777776544 567888988877 389999999999999999875 478999999
Q ss_pred cCchHHhh-cCeEEEEeCCeEEEecChhHHhcC
Q 047286 215 NCLITIRN-ADCIIMVSKGKIVEKGTHDELIED 246 (632)
Q Consensus 215 H~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~ 246 (632)
|+++.+.. ||++++|++|++++.|+++++...
T Consensus 201 Hdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~ 233 (549)
T PRK13545 201 HSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDH 233 (549)
T ss_pred CCHHHHHHhCCEEEEEECCEEEEECCHHHHHhh
Confidence 99998865 999999999999999999998654
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.5e-18 Score=169.20 Aligned_cols=116 Identities=22% Similarity=0.219 Sum_probs=81.4
Q ss_pred ccEEEeeEEEEEecCCCChHHHHHhhhcCCChhh------------hcHHHH----------------------------
Q 047286 500 GDIVFEHTVALVGENGNGKSTVISLAERFHNPEQ------------VIYSWI---------------------------- 539 (632)
Q Consensus 500 g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~------------~~~~~~---------------------------- 539 (632)
-+|.-++.++|+||+|||||||+++|.|+..|.+ +....+
T Consensus 23 ~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~ 102 (258)
T COG1120 23 FSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRY 102 (258)
T ss_pred EEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCC
Confidence 3455556889999999999999999999988743 000000
Q ss_pred -------------HHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh-------------------------
Q 047286 540 -------------IIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY------------------------- 581 (632)
Q Consensus 540 -------------~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~------------------------- 581 (632)
...+.+.+..+ |+..-....-..||||||||+.||||+..
T Consensus 103 p~~~~~~~~~~~D~~~v~~aL~~~--~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~l 180 (258)
T COG1120 103 PHLGLFGRPSKEDEEIVEEALELL--GLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLEL 180 (258)
T ss_pred cccccccCCCHhHHHHHHHHHHHh--CcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHH
Confidence 00011111111 22222222335799999999999999543
Q ss_pred ------------hccccchh-hhhcCCEEEEEeCCeEeeecChHHHhcc
Q 047286 582 ------------CGCGSPPY-HYKNADITSVVKNGVIAEKGRHDALMKI 617 (632)
Q Consensus 582 ------------~~iahrl~-~~~~aD~I~vl~~G~ive~G~h~eL~~~ 617 (632)
+++.|-+. ..+.||++++|++|+|+.+|+++|.+..
T Consensus 181 l~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT~ 229 (258)
T COG1120 181 LRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTE 229 (258)
T ss_pred HHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcCH
Confidence 67889884 5689999999999999999999999874
|
|
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-17 Score=157.53 Aligned_cols=159 Identities=19% Similarity=0.278 Sum_probs=118.8
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcH------------------HhhcceEEEcccCccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPE------------------AEQEKIGLVSKEPIFLFCDFNEGQ 146 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~------------------~~r~~i~~v~Q~~~~~~~~~~~~~ 146 (632)
.+|++|++||+.+|+||||||||||.+.|+|...|... +.|..+.+.+|.|.-+.+- +..+
T Consensus 22 gvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV-~~~~ 100 (251)
T COG0396 22 GVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGV-TNSD 100 (251)
T ss_pred CcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCe-eHHH
Confidence 39999999999999999999999999999876555322 2466788999999755442 1111
Q ss_pred cccc------CCCC---CCHHHHHHHHHHccchhhH-h-----hCCccccccc-----------------ccCCCCHHHH
Q 047286 147 YIPY------GKQN---ASDEHIRPAVQLANAEKSI-D-----KLPLGLDTVV-----------------ATNAVDAQSE 194 (632)
Q Consensus 147 ~i~~------~~~~---~~~~~~~~~~~~~~l~~~i-~-----~l~~g~~~~v-----------------~ts~LD~~~~ 194 (632)
.+.. +.+. ...+++++.++..++++.. + .+|+|...+. ..||||..+-
T Consensus 101 fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdal 180 (251)
T COG0396 101 FLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDAL 180 (251)
T ss_pred HHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHH
Confidence 1211 1111 1245667777777776632 2 3667765443 2799999999
Q ss_pred HHHHHHHHHHh-CCceEEEEecCchHHhh--cCeEEEEeCCeEEEecChhHHhc
Q 047286 195 RIVQAAMVKLV-TNQTVVIVANCLITIRN--ADCIIMVSKGKIVEKGTHDELIE 245 (632)
Q Consensus 195 ~~i~~~l~~~~-~~~tviiitH~~~~~~~--aD~i~vl~~G~i~~~g~~~el~~ 245 (632)
+.+-+.+..++ ++.++++|||....+.+ .|++.+|-+|+|+..|.+ ++..
T Consensus 181 k~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~-el~~ 233 (251)
T COG0396 181 KIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP-ELAE 233 (251)
T ss_pred HHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-HHHH
Confidence 99999999986 47899999999998887 599999999999999998 6643
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.1e-17 Score=191.09 Aligned_cols=76 Identities=22% Similarity=0.352 Sum_probs=67.0
Q ss_pred hhhHhhCCccccccc-------------------ccCCCCHHHHHHHHHHHHHHhC-CceEEEEecCchHHhhcCeEEEE
Q 047286 170 EKSIDKLPLGLDTVV-------------------ATNAVDAQSERIVQAAMVKLVT-NQTVVIVANCLITIRNADCIIMV 229 (632)
Q Consensus 170 ~~~i~~l~~g~~~~v-------------------~ts~LD~~~~~~i~~~l~~~~~-~~tviiitH~~~~~~~aD~i~vl 229 (632)
+..+..||+|..+++ +|++||+...+.+.+.|+++++ |.|||+|+|+++.+..||+|++|
T Consensus 484 ~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~~aD~vi~L 563 (943)
T PRK00349 484 SRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIRAADYIVDI 563 (943)
T ss_pred CCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEe
Confidence 345778888887766 3899999999999999999864 78999999999999889999999
Q ss_pred ------eCCeEEEecChhHHhc
Q 047286 230 ------SKGKIVEKGTHDELIE 245 (632)
Q Consensus 230 ------~~G~i~~~g~~~el~~ 245 (632)
++|+|+.+|+++++..
T Consensus 564 gpgaG~~~G~iv~~g~~~e~~~ 585 (943)
T PRK00349 564 GPGAGVHGGEVVASGTPEEIMK 585 (943)
T ss_pred ccccCCCCCEEeeccCHHHHhc
Confidence 9999999999998754
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.4e-18 Score=159.26 Aligned_cols=123 Identities=21% Similarity=0.249 Sum_probs=86.1
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCC----CC--CcHHhhcceEEEcccCcccccccccccccccCCCCCCHH
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFR----FY--APEAEQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDE 158 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~----~~--~~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~~ 158 (632)
.+||++++|++++|+||||||||||++++.+.. .. .+...+..++|++|
T Consensus 13 ~isl~i~~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q------------------------- 67 (176)
T cd03238 13 NLDVSIPLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQ------------------------- 67 (176)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhH-------------------------
Confidence 399999999999999999999999999985210 00 00001223445444
Q ss_pred HHHHHHHHccc-----hhhHhhCCccccccc-------------------ccCCCCHHHHHHHHHHHHHHh-CCceEEEE
Q 047286 159 HIRPAVQLANA-----EKSIDKLPLGLDTVV-------------------ATNAVDAQSERIVQAAMVKLV-TNQTVVIV 213 (632)
Q Consensus 159 ~~~~~~~~~~l-----~~~i~~l~~g~~~~v-------------------~ts~LD~~~~~~i~~~l~~~~-~~~tviii 213 (632)
.++++..++ +.....||.|+.+++ +|++||+.+++.+.+.++++. .++|+|++
T Consensus 68 --~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIiv 145 (176)
T cd03238 68 --LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILI 145 (176)
T ss_pred --HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 122232222 223344555544333 389999999999999999876 47899999
Q ss_pred ecCchHHhhcCeEEEEeCCeE
Q 047286 214 ANCLITIRNADCIIMVSKGKI 234 (632)
Q Consensus 214 tH~~~~~~~aD~i~vl~~G~i 234 (632)
||+++.+..||++++|++|+.
T Consensus 146 SH~~~~~~~~d~i~~l~~g~~ 166 (176)
T cd03238 146 EHNLDVLSSADWIIDFGPGSG 166 (176)
T ss_pred eCCHHHHHhCCEEEEECCCCC
Confidence 999998888999999977554
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=5e-18 Score=179.91 Aligned_cols=118 Identities=22% Similarity=0.186 Sum_probs=86.9
Q ss_pred ccEEEeeEEEEEecCCCChHHHHHhhhcCCChhhh------------cHH--------------------HHH-------
Q 047286 500 GDIVFEHTVALVGENGNGKSTVISLAERFHNPEQV------------IYS--------------------WII------- 540 (632)
Q Consensus 500 g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~~------------~~~--------------------~~~------- 540 (632)
-+|.-++++||+||||||||||+++|.|+++|++- ... ..+
T Consensus 24 l~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~ 103 (369)
T PRK11000 24 LDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA 103 (369)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhc
Confidence 34555568999999999999999999999887430 000 000
Q ss_pred --------HHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh-------------------------------
Q 047286 541 --------IKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY------------------------------- 581 (632)
Q Consensus 541 --------~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~------------------------------- 581 (632)
..+.+.+..+ |++........+||||||||++||||+..
T Consensus 104 ~~~~~~~~~~~~~~l~~l--gL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~ 181 (369)
T PRK11000 104 GAKKEEINQRVNQVAEVL--QLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHK 181 (369)
T ss_pred CCCHHHHHHHHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 0112223322 44444445567899999999999999554
Q ss_pred ------hccccchhhh-hcCCEEEEEeCCeEeeecChHHHhccCC
Q 047286 582 ------CGCGSPPYHY-KNADITSVVKNGVIAEKGRHDALMKITD 619 (632)
Q Consensus 582 ------~~iahrl~~~-~~aD~I~vl~~G~ive~G~h~eL~~~~~ 619 (632)
+++||.++.+ ..||+|++|++|+|++.|+.+++..++.
T Consensus 182 ~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p~ 226 (369)
T PRK11000 182 RLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPA 226 (369)
T ss_pred HhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 7889999876 4699999999999999999999987543
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.1e-18 Score=154.94 Aligned_cols=107 Identities=24% Similarity=0.286 Sum_probs=84.7
Q ss_pred ccEEEeeEEEEEecCCCChHHHHHhhhcCCChhhhc------------HH------------------------------
Q 047286 500 GDIVFEHTVALVGENGNGKSTVISLAERFHNPEQVI------------YS------------------------------ 537 (632)
Q Consensus 500 g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~~~------------~~------------------------------ 537 (632)
-.|.-++++|||||||||||||+.+|.|+-+|++-. ..
T Consensus 31 L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~ 110 (228)
T COG4181 31 LVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVA 110 (228)
T ss_pred EEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhcc
Confidence 367777899999999999999999999998885410 00
Q ss_pred --HHH---------HHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh-------------------------
Q 047286 538 --WII---------IKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY------------------------- 581 (632)
Q Consensus 538 --~~~---------~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~------------------------- 581 (632)
.+. ..+.+..... |+..++.....+|||||.||+|||||+.-
T Consensus 111 lPleL~ge~~~~~~~~A~~lL~~v--GLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDL 188 (228)
T COG4181 111 LPLELRGESSADSRAGAKALLEAV--GLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADL 188 (228)
T ss_pred chhhhcCCccccHHHHHHHHHHHh--CcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHH
Confidence 000 1233444443 77778888889999999999999999422
Q ss_pred ------------hccccchhhhhcCCEEEEEeCCeEeee
Q 047286 582 ------------CGCGSPPYHYKNADITSVVKNGVIAEK 608 (632)
Q Consensus 582 ------------~~iahrl~~~~~aD~I~vl~~G~ive~ 608 (632)
+.+||.+..-..|||++-|.+|+|++.
T Consensus 189 lF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~~ 227 (228)
T COG4181 189 LFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVED 227 (228)
T ss_pred HHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceeccC
Confidence 899999999999999999999999873
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.2e-17 Score=166.33 Aligned_cols=178 Identities=20% Similarity=0.159 Sum_probs=127.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCC-------C-------------C-C-----CcEEEEeeCCCEEEEEcCCCchH
Q 047286 53 SLNVNAFAAGQAAACKMFETIERIPKIN-------P-------------Y-D-----NRFLQHVPSGTTVALVGQSGSGK 106 (632)
Q Consensus 53 ~~~~~~~~~~~~a~~ri~~~~~~~~~~~-------~-------------~-~-----~~~~~~i~~Ge~~~ivG~sGsGK 106 (632)
...++.+.+|.+|+++|.++-..++.-. + + + .++|++|++||++.|+|.|||||
T Consensus 283 vgilP~l~~AqvA~~kiakle~~~~~a~~~~~q~~p~~~~lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGK 362 (546)
T COG4615 283 VGILPTLLTAQVAFNKIAKLELAPYKADFPRPQAFPDWKTLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGK 362 (546)
T ss_pred HhhhhHHHHHHHHHHHHHHhhcCCccccCCCCCcCCcccceeeeeeeeccCcccceecceeeEEecCcEEEEECCCCCcH
Confidence 3446778999999999988754332110 0 0 0 12999999999999999999999
Q ss_pred HHHHHHHHhCCCC---------------CcHHhhcceEEEcccCcccccccccccccccCCCCCCHHHHHHHHHHccchh
Q 047286 107 STVINLVESFRFY---------------APEAEQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEK 171 (632)
Q Consensus 107 STLl~ll~~~~~~---------------~~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~ 171 (632)
||+++++.|+-.+ .+++.|+-++-|+-|.++|...+... + .++.+.+.+.++...+..
T Consensus 363 ST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~~e-~------~as~q~i~~~LqrLel~~ 435 (546)
T COG4615 363 STLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPE-G------KASPQLIEKWLQRLELAH 435 (546)
T ss_pred HHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhCCc-c------CCChHHHHHHHHHHHHhh
Confidence 9999999855221 12335666777777777665444321 1 145555555555443322
Q ss_pred h---------HhhCCcccccccc-----------------cCCCCHHHHHHHHHHHHHH-h-CCceEEEEecCchHHhhc
Q 047286 172 S---------IDKLPLGLDTVVA-----------------TNAVDAQSERIVQAAMVKL-V-TNQTVVIVANCLITIRNA 223 (632)
Q Consensus 172 ~---------i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~~l~~~-~-~~~tviiitH~~~~~~~a 223 (632)
. .-+|+.|++.+++ .+--||.-++.+.+.+... + .|||++.||||......|
T Consensus 436 ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~A 515 (546)
T COG4615 436 KTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHA 515 (546)
T ss_pred hhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhH
Confidence 1 3467888887775 3557999999998877654 3 489999999999999999
Q ss_pred CeEEEEeCCeEEEe
Q 047286 224 DCIIMVSKGKIVEK 237 (632)
Q Consensus 224 D~i~vl~~G~i~~~ 237 (632)
||++.|++|++++.
T Consensus 516 Drll~~~~G~~~e~ 529 (546)
T COG4615 516 DRLLEMRNGQLSEL 529 (546)
T ss_pred HHHHHHhcCceeec
Confidence 99999999999875
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.3e-18 Score=170.92 Aligned_cols=125 Identities=19% Similarity=0.268 Sum_probs=90.0
Q ss_pred ccccEEEeeEEEEEecCCCChHHHHHhhhcCCChhh---------h---cHHH-------H-------------------
Q 047286 498 VRGDIVFEHTVALVGENGNGKSTVISLAERFHNPEQ---------V---IYSW-------I------------------- 539 (632)
Q Consensus 498 ~~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~---~~~~-------~------------------- 539 (632)
+.-+|+-++++||+||+|||||||+++|.|++.|++ + .... .
T Consensus 43 is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~ 122 (269)
T cd03294 43 VSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLEN 122 (269)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHHH
Confidence 344566667999999999999999999999987743 0 0000 0
Q ss_pred HH---------------HHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh-----------------------
Q 047286 540 II---------------KCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY----------------------- 581 (632)
Q Consensus 540 ~~---------------~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~----------------------- 581 (632)
+. .+.+.+..+ |++........+||||||||++||||+..
T Consensus 123 l~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~ 200 (269)
T cd03294 123 VAFGLEVQGVPRAEREERAAEALELV--GLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQ 200 (269)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHc--CCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHH
Confidence 00 011222222 34333445557899999999999999554
Q ss_pred --------------hccccchhhh-hcCCEEEEEeCCeEeeecChHHHhccCCchhHH
Q 047286 582 --------------CGCGSPPYHY-KNADITSVVKNGVIAEKGRHDALMKITDGTYAS 624 (632)
Q Consensus 582 --------------~~iahrl~~~-~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~ 624 (632)
+++||+++.+ +.||+|++|++|++++.|+++++++.+...|.+
T Consensus 201 ~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~ 258 (269)
T cd03294 201 DELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNPANDYVR 258 (269)
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhCcCcHHHH
Confidence 6889999887 469999999999999999999998754555544
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.9e-18 Score=188.88 Aligned_cols=151 Identities=18% Similarity=0.243 Sum_probs=113.1
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC-------------Cc----HHhhcceEEEcccCccccc---ccccc
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY-------------AP----EAEQEKIGLVSKEPIFLFC---DFNEG 145 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~-------------~~----~~~r~~i~~v~Q~~~~~~~---~~~~~ 145 (632)
+||++++||+++|+||||||||||+++|+|.... .. ...+++++|++|++.++.. +..+
T Consensus 279 vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~- 357 (490)
T PRK10938 279 LSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRN- 357 (490)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHH-
Confidence 8999999999999999999999999999975321 00 1235679999998754332 2222
Q ss_pred cccccC------C-CCC---CHHHHHHHHHHccchh-----hHhhCCcccccccc-----------------cCCCCHHH
Q 047286 146 QYIPYG------K-QNA---SDEHIRPAVQLANAEK-----SIDKLPLGLDTVVA-----------------TNAVDAQS 193 (632)
Q Consensus 146 ~~i~~~------~-~~~---~~~~~~~~~~~~~l~~-----~i~~l~~g~~~~v~-----------------ts~LD~~~ 193 (632)
++.++ . ... ..+++.++++.+++.+ .+.+||+|++++++ |++||+.+
T Consensus 358 -~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~ 436 (490)
T PRK10938 358 -VILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLN 436 (490)
T ss_pred -HHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHH
Confidence 22111 0 001 1245677888877654 46789999998883 99999999
Q ss_pred HHHHHHHHHHHhC-C-ceEEEEecCchHHh--hcCeEEEEeCCeEEEec
Q 047286 194 ERIVQAAMVKLVT-N-QTVVIVANCLITIR--NADCIIMVSKGKIVEKG 238 (632)
Q Consensus 194 ~~~i~~~l~~~~~-~-~tviiitH~~~~~~--~aD~i~vl~~G~i~~~g 238 (632)
++.+.+.|+++.+ + .|+|++||+++.+. .||++++|++|+|++.-
T Consensus 437 ~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 437 RQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYV 485 (490)
T ss_pred HHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEee
Confidence 9999999999854 4 46999999999885 38999999999998754
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.4e-18 Score=178.97 Aligned_cols=119 Identities=21% Similarity=0.270 Sum_probs=86.7
Q ss_pred EEEeeEEEEEecCCCChHHHHHhhhcCCChhhh------------c--------------------HHHHH---------
Q 047286 502 IVFEHTVALVGENGNGKSTVISLAERFHNPEQV------------I--------------------YSWII--------- 540 (632)
Q Consensus 502 I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~~------------~--------------------~~~~~--------- 540 (632)
|.-+++++|+||||||||||+++|.|+++|++- . ...-+
T Consensus 42 i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~ 121 (377)
T PRK11607 42 IYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKL 121 (377)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCC
Confidence 333458999999999999999999999887530 0 00000
Q ss_pred ------HHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh---------------------------------
Q 047286 541 ------IKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY--------------------------------- 581 (632)
Q Consensus 541 ------~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~--------------------------------- 581 (632)
..+.+.+..+ |++........+||||||||+|||||+..
T Consensus 122 ~~~~~~~~v~~~l~~l--~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~ 199 (377)
T PRK11607 122 PKAEIASRVNEMLGLV--HMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERV 199 (377)
T ss_pred CHHHHHHHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc
Confidence 0112222222 34333444567899999999999999544
Q ss_pred ----hccccchhhh-hcCCEEEEEeCCeEeeecChHHHhccCCchh
Q 047286 582 ----CGCGSPPYHY-KNADITSVVKNGVIAEKGRHDALMKITDGTY 622 (632)
Q Consensus 582 ----~~iahrl~~~-~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y 622 (632)
+.+||.++.+ .-||+|++|++|+|++.|+.+|+..++...|
T Consensus 200 g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p~~~~ 245 (377)
T PRK11607 200 GVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRY 245 (377)
T ss_pred CCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCCccHH
Confidence 7889999875 6799999999999999999999998644333
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.6e-18 Score=168.92 Aligned_cols=118 Identities=20% Similarity=0.205 Sum_probs=88.0
Q ss_pred ccccEEEeeEEEEEecCCCChHHHHHhhhcCCChhhh------------cHHH-H----------------------H--
Q 047286 498 VRGDIVFEHTVALVGENGNGKSTVISLAERFHNPEQV------------IYSW-I----------------------I-- 540 (632)
Q Consensus 498 ~~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~~------------~~~~-~----------------------~-- 540 (632)
..-+|+-++++||+||+|||||||+++|.|++.|++. .... . +
T Consensus 19 vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~ 98 (236)
T cd03219 19 VSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMV 98 (236)
T ss_pred ceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHHHHHHH
Confidence 3335556679999999999999999999999876330 0000 0 0
Q ss_pred -----------------------HHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh----------------
Q 047286 541 -----------------------IKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY---------------- 581 (632)
Q Consensus 541 -----------------------~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~---------------- 581 (632)
..+.+++..+ |++........+||||||||++||||+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~ 176 (236)
T cd03219 99 AAQARTGSGLLLARARREEREARERAEELLERV--GLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNP 176 (236)
T ss_pred HHhhccccccccccccccHHHHHHHHHHHHHHc--CccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence 0112233333 45555566677899999999999999654
Q ss_pred --------------------hccccchhhhhc-CCEEEEEeCCeEeeecChHHHhcc
Q 047286 582 --------------------CGCGSPPYHYKN-ADITSVVKNGVIAEKGRHDALMKI 617 (632)
Q Consensus 582 --------------------~~iahrl~~~~~-aD~I~vl~~G~ive~G~h~eL~~~ 617 (632)
+++||+++.+.. ||+|++|++|+|++.|+++++++.
T Consensus 177 ~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 233 (236)
T cd03219 177 EETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNN 233 (236)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhccC
Confidence 678999999855 999999999999999999999764
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.6e-18 Score=188.10 Aligned_cols=158 Identities=20% Similarity=0.232 Sum_probs=116.1
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHH--h--hcceEEEcccCcccccccccccccccCCC----CCCH
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEA--E--QEKIGLVSKEPIFLFCDFNEGQYIPYGKQ----NASD 157 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~--~--r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~----~~~~ 157 (632)
+||+|++||+++|+||||||||||+++|+|........ + ...+||++|++..++...+..+|+.++.. ....
T Consensus 343 isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~ 422 (556)
T PRK11819 343 LSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNRE 422 (556)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchhhcCCCCCHHHHHHhhcccccccccH
Confidence 99999999999999999999999999999653322111 1 12599999996223333333335544321 1123
Q ss_pred HHHHHHHHHccch-----hhHhhCCccccccc-----------------ccCCCCHHHHHHHHHHHHHHhCCceEEEEec
Q 047286 158 EHIRPAVQLANAE-----KSIDKLPLGLDTVV-----------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVAN 215 (632)
Q Consensus 158 ~~~~~~~~~~~l~-----~~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l~~~~~~~tviiitH 215 (632)
.+.+.+++..++. ..+..||+|+.+++ +|++||+.+++.+.+.|.++. .|+|++||
T Consensus 423 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vtH 500 (556)
T PRK11819 423 IPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--GCAVVISH 500 (556)
T ss_pred HHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--CeEEEEEC
Confidence 3455677777663 34678999999887 399999999999999999873 48999999
Q ss_pred CchHHhh-cCeEEEEeC-CeEE-EecChhHHhc
Q 047286 216 CLITIRN-ADCIIMVSK-GKIV-EKGTHDELIE 245 (632)
Q Consensus 216 ~~~~~~~-aD~i~vl~~-G~i~-~~g~~~el~~ 245 (632)
+++.+.. ||+|++|++ |++. ..|+++++.+
T Consensus 501 d~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~ 533 (556)
T PRK11819 501 DRWFLDRIATHILAFEGDSQVEWFEGNFQEYEE 533 (556)
T ss_pred CHHHHHHhCCEEEEEECCCeEEEecCCHHHHHH
Confidence 9998865 999999986 7876 4677776543
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.5e-18 Score=164.98 Aligned_cols=143 Identities=13% Similarity=0.210 Sum_probs=108.5
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC--------------cHHhhcceEEEcccCcccc-cccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA--------------PEAEQEKIGLVSKEPIFLF-CDFNEGQYIP 149 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~--------------~~~~r~~i~~v~Q~~~~~~-~~~~~~~~i~ 149 (632)
.+||++++||+++|+||||||||||+++|+|..... ....+++++|++|++.++. .++.+ |+.
T Consensus 19 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e--~l~ 96 (204)
T PRK13538 19 GLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALE--NLR 96 (204)
T ss_pred cceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCCccccCcCCcHHH--HHH
Confidence 399999999999999999999999999998653211 1124567999999986543 24444 554
Q ss_pred cCCC---CCCHHHHHHHHHHccchh----hHhhCCccccccc-----------------ccCCCCHHHHHHHHHHHHHHh
Q 047286 150 YGKQ---NASDEHIRPAVQLANAEK----SIDKLPLGLDTVV-----------------ATNAVDAQSERIVQAAMVKLV 205 (632)
Q Consensus 150 ~~~~---~~~~~~~~~~~~~~~l~~----~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l~~~~ 205 (632)
+... ....+++.++++..++.+ .+..||.|..+++ +|++||+.+++.+.+.|+++.
T Consensus 97 ~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 176 (204)
T PRK13538 97 FYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHA 176 (204)
T ss_pred HHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 4321 123456778888887754 4567888988777 399999999999999999875
Q ss_pred -CCceEEEEecCchHHhh-cCeEEEE
Q 047286 206 -TNQTVVIVANCLITIRN-ADCIIMV 229 (632)
Q Consensus 206 -~~~tviiitH~~~~~~~-aD~i~vl 229 (632)
++.|+|++||++..+.. .+|++.+
T Consensus 177 ~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 177 EQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred HCCCEEEEEecChhhhccCCceEEec
Confidence 47899999999999966 5577666
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.2e-18 Score=177.12 Aligned_cols=122 Identities=18% Similarity=0.231 Sum_probs=89.2
Q ss_pred cEEEeeEEEEEecCCCChHHHHHhhhcCCChhhh-----------c-----HHHH-----------------------HH
Q 047286 501 DIVFEHTVALVGENGNGKSTVISLAERFHNPEQV-----------I-----YSWI-----------------------II 541 (632)
Q Consensus 501 ~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~~-----------~-----~~~~-----------------------~~ 541 (632)
+|.-+++++|+|+||||||||+++|.|+++|++. . ...+ ..
T Consensus 46 ~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~e 125 (382)
T TIGR03415 46 DIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEE 125 (382)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHH
Confidence 4555568999999999999999999999987430 0 0000 00
Q ss_pred ------------------HHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh----------------------
Q 047286 542 ------------------KCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY---------------------- 581 (632)
Q Consensus 542 ------------------~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~---------------------- 581 (632)
.+.+++..+ |++........+||||||||++||||+..
T Consensus 126 Ni~~~~~~~g~~~~~~~~~a~e~le~v--gL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l 203 (382)
T TIGR03415 126 NVAFGLEMQGMPEAERRKRVDEQLELV--GLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQL 203 (382)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHH
Confidence 111222222 44433445566899999999999999544
Q ss_pred ---------------hccccchhhh-hcCCEEEEEeCCeEeeecChHHHhccCCchhHH
Q 047286 582 ---------------CGCGSPPYHY-KNADITSVVKNGVIAEKGRHDALMKITDGTYAS 624 (632)
Q Consensus 582 ---------------~~iahrl~~~-~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~ 624 (632)
+++||.++.+ +.||+|++|++|+|++.|+++|++.++...|.+
T Consensus 204 ~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p~~~~~~ 262 (382)
T TIGR03415 204 QDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYVA 262 (382)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCcchHHHH
Confidence 7889999986 679999999999999999999999764455543
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.5e-18 Score=176.79 Aligned_cols=120 Identities=26% Similarity=0.291 Sum_probs=86.5
Q ss_pred cEEEeeEEEEEecCCCChHHHHHhhhcCCChhhh------------cHHH-----------------H---H--------
Q 047286 501 DIVFEHTVALVGENGNGKSTVISLAERFHNPEQV------------IYSW-----------------I---I-------- 540 (632)
Q Consensus 501 ~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~~------------~~~~-----------------~---~-------- 540 (632)
+|.-++++||+||||||||||+++|.|+++|++- .... . +
T Consensus 24 ~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~ 103 (353)
T PRK10851 24 DIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLP 103 (353)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcc
Confidence 4445569999999999999999999999887430 0000 0 0
Q ss_pred -----------HHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh----------------------------
Q 047286 541 -----------IKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY---------------------------- 581 (632)
Q Consensus 541 -----------~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~---------------------------- 581 (632)
..+.+.+..+ |++.........||||||||++||||+..
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~--~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~ 181 (353)
T PRK10851 104 RRERPNAAAIKAKVTQLLEMV--QLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQ 181 (353)
T ss_pred cccCCCHHHHHHHHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 0111122222 33333344567899999999999999654
Q ss_pred ---------hccccchhhh-hcCCEEEEEeCCeEeeecChHHHhccCCchh
Q 047286 582 ---------CGCGSPPYHY-KNADITSVVKNGVIAEKGRHDALMKITDGTY 622 (632)
Q Consensus 582 ---------~~iahrl~~~-~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y 622 (632)
+++||.+..+ +.||+|++|++|+|++.|++++++.++...|
T Consensus 182 l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~p~~~~ 232 (353)
T PRK10851 182 LHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPATRF 232 (353)
T ss_pred HHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccchH
Confidence 7889999875 5699999999999999999999997643333
|
|
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.3e-18 Score=165.02 Aligned_cols=158 Identities=22% Similarity=0.377 Sum_probs=111.1
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC----------cH----HhhcceEEEccc-Ccccc-----ccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA----------PE----AEQEKIGLVSKE-PIFLF-----CDFNE 144 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~----------~~----~~r~~i~~v~Q~-~~~~~-----~~~~~ 144 (632)
++||+|++|++++++|||||||||++|+|.|+.... |- +.-+++++|.-+ ..+.. .++..
T Consensus 42 disf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v 121 (325)
T COG4586 42 DISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEV 121 (325)
T ss_pred eeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHH
Confidence 499999999999999999999999999998763322 21 122345555321 11111 11111
Q ss_pred ccccccCCCCCCH----HHHHHHHHHccch----hhHhhCCccccccc-----------------ccCCCCHHHHHHHHH
Q 047286 145 GQYIPYGKQNASD----EHIRPAVQLANAE----KSIDKLPLGLDTVV-----------------ATNAVDAQSERIVQA 199 (632)
Q Consensus 145 ~~~i~~~~~~~~~----~~~~~~~~~~~l~----~~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~ 199 (632)
+..| + +..+ ++.....+..+++ ..+.+||.|.+.+. +|-+||...+..+.+
T Consensus 122 ~~~I-y---~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~ 197 (325)
T COG4586 122 LKLI-Y---EIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIRE 197 (325)
T ss_pred HHHH-H---hCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHH
Confidence 1100 1 1222 2333344444444 45678999987655 389999999999999
Q ss_pred HHHHHhC--CceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcC
Q 047286 200 AMVKLVT--NQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIED 246 (632)
Q Consensus 200 ~l~~~~~--~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~ 246 (632)
.+++..+ +.||+++||++..+.. ||||+.|++|+++.+|+.+++...
T Consensus 198 Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~ 247 (325)
T COG4586 198 FLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQ 247 (325)
T ss_pred HHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHHH
Confidence 9999853 6899999999988865 999999999999999999998654
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.4e-16 Score=157.00 Aligned_cols=258 Identities=20% Similarity=0.167 Sum_probs=155.3
Q ss_pred hhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHH-------
Q 047286 348 IGAVGARLSTDASAVRSVVGDALGLIIQNIATIAAGLVIAFTA-WKLAFITLAVPSLTIAEGYLKKKKNYERL------- 419 (632)
Q Consensus 348 ~G~l~srls~D~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~l~lv~l~~~~l~~~~~~~~~~~~~~~~------- 419 (632)
.++++.++++|+..+. +-...++.+++....++++.+...+. +++.+++++.+.+.+...++...+.+++.
T Consensus 104 ~~rlla~L~~Dvr~IS-f~~s~lp~~~qa~il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~e 182 (546)
T COG4615 104 SARLLAGLTSDVRNIS-FAFSRLPELVQAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETE 182 (546)
T ss_pred ccchhhhhccccccee-ehHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3899999999999998 55567788888888888877766654 77666665554444443332221100000
Q ss_pred --------------------------------------------HHHHH------------HHhhhhH--Hhh-cCCcCH
Q 047286 420 --------------------------------------------HINAF------------CFFIGSK--LVE-HGDATF 440 (632)
Q Consensus 420 --------------------------------------------~~~~~------------~~~~g~~--~v~-~g~~s~ 440 (632)
..+.+ .-.+|.. +.. .+-.+.
T Consensus 183 d~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~~~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~lal~~~w~st 262 (546)
T COG4615 183 DKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLALSLGWAST 262 (546)
T ss_pred HHHHHHHHHHhcchhhheechHHHHHHHhhhcCcchHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchh
Confidence 00000 0011111 100 111111
Q ss_pred HH--HHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCccc-------------------
Q 047286 441 GE--VFKFLSEFGCFWCLESTAVAPNADKAKGSAASIFEILESKPKIDWSSKDGMTPSTVR------------------- 499 (632)
Q Consensus 441 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~------------------- 499 (632)
.. .++....+..-++.+.....|.+..+.++.++|.++-..|+..+.+.+.. .+.++
T Consensus 263 ~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~~~~a~~~~~q~--~p~~~~lelrnvrfay~~~~Fhvg 340 (546)
T COG4615 263 NVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKADFPRPQA--FPDWKTLELRNVRFAYQDNAFHVG 340 (546)
T ss_pred hHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCccccCCCCCc--CCcccceeeeeeeeccCcccceec
Confidence 11 11111222223466777888899999999999998865544333221111 11121
Q ss_pred ---ccEEEeeEEEEEecCCCChHHHHHhhhcCCChhhhc--------------H-HHH----------------------
Q 047286 500 ---GDIVFEHTVALVGENGNGKSTVISLAERFHNPEQVI--------------Y-SWI---------------------- 539 (632)
Q Consensus 500 ---g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~~~--------------~-~~~---------------------- 539 (632)
-+|.-++.|=|+|.+||||||+++||.|+|.|++.. . ..+
T Consensus 341 PiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~~e~~as 420 (546)
T COG4615 341 PINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKAS 420 (546)
T ss_pred ceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhCCccCCC
Confidence 123333468899999999999999999999996400 0 000
Q ss_pred HHHHHHHHhcCCCccCcccccCC---CCCChHHHHHHHHHHHHhh-----------------------------------
Q 047286 540 IIKCTNFIASLPQGSDLNVGERG---LQLSGGLKQRIARTRARNY----------------------------------- 581 (632)
Q Consensus 540 ~~~~~~~i~~lp~g~dt~vge~G---~~LSgGQrQRiaiARA~~~----------------------------------- 581 (632)
...+..+...|.-.-.|.+-.+- ..||.|||.|+|+-=|++-
T Consensus 421 ~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGK 500 (546)
T COG4615 421 PQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGK 500 (546)
T ss_pred hHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCC
Confidence 01233444444433344443332 4699999999999888443
Q ss_pred --hccccchhhhhcCCEEEEEeCCeEeee
Q 047286 582 --CGCGSPPYHYKNADITSVVKNGVIAEK 608 (632)
Q Consensus 582 --~~iahrl~~~~~aD~I~vl~~G~ive~ 608 (632)
+.|||.-.-...|||++-+++|+++|.
T Consensus 501 TI~aIsHDd~YF~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 501 TIFAISHDDHYFIHADRLLEMRNGQLSEL 529 (546)
T ss_pred eEEEEecCchhhhhHHHHHHHhcCceeec
Confidence 789999999999999999999999995
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.9e-18 Score=167.62 Aligned_cols=118 Identities=22% Similarity=0.270 Sum_probs=87.6
Q ss_pred ccccEEEeeEEEEEecCCCChHHHHHhhhcCCChhh---------hc---HH-----HH-----------------HH--
Q 047286 498 VRGDIVFEHTVALVGENGNGKSTVISLAERFHNPEQ---------VI---YS-----WI-----------------II-- 541 (632)
Q Consensus 498 ~~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~~---~~-----~~-----------------~~-- 541 (632)
+.-+|.-++.+||+||+|||||||+++|.|+++|++ +. .. .. ..
T Consensus 24 ~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l 103 (233)
T cd03258 24 VSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENV 103 (233)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHH
Confidence 334556667999999999999999999999988743 00 00 00 00
Q ss_pred ----------------HHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh------------------------
Q 047286 542 ----------------KCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY------------------------ 581 (632)
Q Consensus 542 ----------------~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~------------------------ 581 (632)
.+.+.+..+ |++........+||||||||++||||++.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~ 181 (233)
T cd03258 104 ALPLEIAGVPKAEIEERVLELLELV--GLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILA 181 (233)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHC--CChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHH
Confidence 111223332 44444555667899999999999999554
Q ss_pred -------------hccccchhhhh-cCCEEEEEeCCeEeeecChHHHhcc
Q 047286 582 -------------CGCGSPPYHYK-NADITSVVKNGVIAEKGRHDALMKI 617 (632)
Q Consensus 582 -------------~~iahrl~~~~-~aD~I~vl~~G~ive~G~h~eL~~~ 617 (632)
+++||+++.+. .||+|++|++|++++.|+++++++.
T Consensus 182 ~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 231 (233)
T cd03258 182 LLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFAN 231 (233)
T ss_pred HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhcC
Confidence 68899999986 5999999999999999999998764
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-17 Score=192.79 Aligned_cols=75 Identities=23% Similarity=0.364 Sum_probs=66.0
Q ss_pred hhHhhCCccccccc-------------------ccCCCCHHHHHHHHHHHHHHh-CCceEEEEecCchHHhhcCeEEEE-
Q 047286 171 KSIDKLPLGLDTVV-------------------ATNAVDAQSERIVQAAMVKLV-TNQTVVIVANCLITIRNADCIIMV- 229 (632)
Q Consensus 171 ~~i~~l~~g~~~~v-------------------~ts~LD~~~~~~i~~~l~~~~-~~~tviiitH~~~~~~~aD~i~vl- 229 (632)
+.+.+||+|+.+++ +|++||+...+.+.+.|+++. +|.|||+|+|+++.+..||+|++|
T Consensus 483 r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~~aD~vi~Lg 562 (924)
T TIGR00630 483 RAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIRAADYVIDIG 562 (924)
T ss_pred CCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCEEEEec
Confidence 45677888887766 289999999999999999985 478999999999999899999999
Q ss_pred -----eCCeEEEecChhHHhc
Q 047286 230 -----SKGKIVEKGTHDELIE 245 (632)
Q Consensus 230 -----~~G~i~~~g~~~el~~ 245 (632)
++|+|+..|+++++..
T Consensus 563 pgaG~~~G~Iv~~g~~~el~~ 583 (924)
T TIGR00630 563 PGAGIHGGEVVASGTPEEILA 583 (924)
T ss_pred ccccCCCCEEeeccCHHHHhc
Confidence 8999999999988753
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.2e-18 Score=174.62 Aligned_cols=117 Identities=15% Similarity=0.166 Sum_probs=86.4
Q ss_pred cccEEEeeEEEEEecCCCChHHHHHhhhcCCChhhh---------c--HHH-H---------------------H-----
Q 047286 499 RGDIVFEHTVALVGENGNGKSTVISLAERFHNPEQV---------I--YSW-I---------------------I----- 540 (632)
Q Consensus 499 ~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~~---------~--~~~-~---------------------~----- 540 (632)
.-+|.-++++||+||+|||||||+++|.|++.|++. . ... . +
T Consensus 13 s~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~ 92 (302)
T TIGR01188 13 NFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGR 92 (302)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHHHHHH
Confidence 335555678999999999999999999999887530 0 000 0 0
Q ss_pred ----------HHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh-----------------------------
Q 047286 541 ----------IKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY----------------------------- 581 (632)
Q Consensus 541 ----------~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~----------------------------- 581 (632)
..+.+.+..+ |++........+||||||||++||||++.
T Consensus 93 ~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~ 170 (302)
T TIGR01188 93 LYGLPKDEAEERAEELLELF--ELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRAL 170 (302)
T ss_pred HcCCCHHHHHHHHHHHHHHc--CChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence 0122233332 33333344556899999999999999654
Q ss_pred -------hccccchhhhh-cCCEEEEEeCCeEeeecChHHHhcc
Q 047286 582 -------CGCGSPPYHYK-NADITSVVKNGVIAEKGRHDALMKI 617 (632)
Q Consensus 582 -------~~iahrl~~~~-~aD~I~vl~~G~ive~G~h~eL~~~ 617 (632)
+++||.++.+. .||+|++|++|+|++.|+++++.++
T Consensus 171 ~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 171 KEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred HhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 68899999886 5999999999999999999999764
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-17 Score=187.27 Aligned_cols=156 Identities=20% Similarity=0.240 Sum_probs=114.6
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHHh----hcceEEEcccCcccccccccccccccCCC----CCCH
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAE----QEKIGLVSKEPIFLFCDFNEGQYIPYGKQ----NASD 157 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~~----r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~----~~~~ 157 (632)
+||+|++|++++|+||||||||||+++|.|........+ ...++|++|++..++...+..+|+.++.. ....
T Consensus 341 isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~ 420 (552)
T TIGR03719 341 LSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKRE 420 (552)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCccccCCCCcHHHHHHhhccccccCcch
Confidence 999999999999999999999999999986532221111 12599999996323333333335554321 1113
Q ss_pred HHHHHHHHHccch-----hhHhhCCccccccc-----------------ccCCCCHHHHHHHHHHHHHHhCCceEEEEec
Q 047286 158 EHIRPAVQLANAE-----KSIDKLPLGLDTVV-----------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVAN 215 (632)
Q Consensus 158 ~~~~~~~~~~~l~-----~~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l~~~~~~~tviiitH 215 (632)
.+.+++++..++. ..+.+||+|+++++ +|++||+.+++.+.+.|+++. .|+|++||
T Consensus 421 ~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~viivsH 498 (552)
T TIGR03719 421 VPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--GCAVVISH 498 (552)
T ss_pred HHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--CeEEEEeC
Confidence 3455677777763 34678999999888 399999999999999999873 48999999
Q ss_pred CchHHhh-cCeEEEEeC-CeEE-EecChhHH
Q 047286 216 CLITIRN-ADCIIMVSK-GKIV-EKGTHDEL 243 (632)
Q Consensus 216 ~~~~~~~-aD~i~vl~~-G~i~-~~g~~~el 243 (632)
+++.+.. ||+|++|++ |++. ..|+.++.
T Consensus 499 d~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~ 529 (552)
T TIGR03719 499 DRWFLDRIATHILAFEGDSHVEWFEGNYSEY 529 (552)
T ss_pred CHHHHHHhCCEEEEEECCCeEEEeCCCHHHH
Confidence 9998865 999999997 5876 45666554
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.8e-18 Score=166.95 Aligned_cols=116 Identities=18% Similarity=0.201 Sum_probs=84.3
Q ss_pred cccccEEEeeEEEEEecCCCChHHHHHhhhcCCChhhh---------cH--HHH----------------------H---
Q 047286 497 TVRGDIVFEHTVALVGENGNGKSTVISLAERFHNPEQV---------IY--SWI----------------------I--- 540 (632)
Q Consensus 497 ~~~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~~---------~~--~~~----------------------~--- 540 (632)
++.-+|+-++.+||+||+|||||||+++|.|+++|++. .. ... +
T Consensus 20 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~ 99 (220)
T cd03263 20 DLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFY 99 (220)
T ss_pred ceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHHHHHH
Confidence 33445666679999999999999999999999887430 00 000 0
Q ss_pred ------------HHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh---------------------------
Q 047286 541 ------------IKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY--------------------------- 581 (632)
Q Consensus 541 ------------~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~--------------------------- 581 (632)
..+.+++..+ |++........+||||||||++||||+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~ 177 (220)
T cd03263 100 ARLKGLPKSEIKEEVELLLRVL--GLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLIL 177 (220)
T ss_pred HHHcCCCHHHHHHHHHHHHHHc--CCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHH
Confidence 0122333322 33333334456899999999999999554
Q ss_pred --------hccccchhhhh-cCCEEEEEeCCeEeeecChHHH
Q 047286 582 --------CGCGSPPYHYK-NADITSVVKNGVIAEKGRHDAL 614 (632)
Q Consensus 582 --------~~iahrl~~~~-~aD~I~vl~~G~ive~G~h~eL 614 (632)
+++||++..+. .||+|++|++|++++.|+++++
T Consensus 178 ~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 178 EVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 68899999885 5999999999999999999886
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.2e-18 Score=186.25 Aligned_cols=156 Identities=15% Similarity=0.219 Sum_probs=113.4
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC---------------c-HHhhcceEEEcccCc---ccc-cccccc
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA---------------P-EAEQEKIGLVSKEPI---FLF-CDFNEG 145 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~---------------~-~~~r~~i~~v~Q~~~---~~~-~~~~~~ 145 (632)
+||++++||+++|+||||||||||+++|.|+.... + ...++.++|++|++. +|. .++.++
T Consensus 267 vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~ 346 (491)
T PRK10982 267 VSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFN 346 (491)
T ss_pred eeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHh
Confidence 89999999999999999999999999998653211 0 012456999999853 222 122111
Q ss_pred ---cccccCCC-----C--CCHHHHHHHHHHccc-----hhhHhhCCccccccc-----------------ccCCCCHHH
Q 047286 146 ---QYIPYGKQ-----N--ASDEHIRPAVQLANA-----EKSIDKLPLGLDTVV-----------------ATNAVDAQS 193 (632)
Q Consensus 146 ---~~i~~~~~-----~--~~~~~~~~~~~~~~l-----~~~i~~l~~g~~~~v-----------------~ts~LD~~~ 193 (632)
+++.+... . ...+++.+.++..++ +..+.+||+|+++++ +|++||+.+
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~ 426 (491)
T PRK10982 347 SLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGA 426 (491)
T ss_pred eehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhH
Confidence 11211100 0 112344556666554 345788999999888 399999999
Q ss_pred HHHHHHHHHHHh-CCceEEEEecCchHHhh-cCeEEEEeCCeEEEecChh
Q 047286 194 ERIVQAAMVKLV-TNQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHD 241 (632)
Q Consensus 194 ~~~i~~~l~~~~-~~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~ 241 (632)
++.+++.|.++. +++|+|++||+++.+.. ||++++|++|+++..++.+
T Consensus 427 ~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~ 476 (491)
T PRK10982 427 KFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTK 476 (491)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEccc
Confidence 999999998875 57899999999998865 9999999999999877654
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.6e-18 Score=163.06 Aligned_cols=118 Identities=25% Similarity=0.206 Sum_probs=82.2
Q ss_pred cccccEEEeeEEEEEecCCCChHHHHHhhhcCCChhhh------------cHHHH-------------------------
Q 047286 497 TVRGDIVFEHTVALVGENGNGKSTVISLAERFHNPEQV------------IYSWI------------------------- 539 (632)
Q Consensus 497 ~~~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~~------------~~~~~------------------------- 539 (632)
+++-+|.-++.|||+||||||||||++.|.|+.+|++. .-..+
T Consensus 22 ~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~N 101 (258)
T COG3638 22 DVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLEN 101 (258)
T ss_pred eEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCCcccccHHHHH
Confidence 34446666779999999999999999999999998540 00000
Q ss_pred -----------------------HHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh---------------
Q 047286 540 -----------------------IIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY--------------- 581 (632)
Q Consensus 540 -----------------------~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~--------------- 581 (632)
...+.+-...+ |+--..-.+-.+|||||.||++||||+..
T Consensus 102 Vl~grl~~~s~~~slfglfsk~dk~~Al~aLerv--gi~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLD 179 (258)
T COG3638 102 VLLGRLGYTSTWRSLFGLFSKEDKAQALDALERV--GILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLD 179 (258)
T ss_pred HHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHc--CcHHHHHHHhccCCcchhHHHHHHHHHhcCCCEEecCCcccccC
Confidence 00111111111 22223335678999999999999999654
Q ss_pred ----------------------hccccchhhh-hcCCEEEEEeCCeEeeecChHHHhc
Q 047286 582 ----------------------CGCGSPPYHY-KNADITSVVKNGVIAEKGRHDALMK 616 (632)
Q Consensus 582 ----------------------~~iahrl~~~-~~aD~I~vl~~G~ive~G~h~eL~~ 616 (632)
++.-|-.... +.||||+=|++|+||-.|+.+||-.
T Consensus 180 p~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~~el~~ 237 (258)
T COG3638 180 PESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASELTD 237 (258)
T ss_pred hhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCChhhhhH
Confidence 3335555555 4799999999999999999999653
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-17 Score=190.25 Aligned_cols=155 Identities=19% Similarity=0.257 Sum_probs=116.4
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHH----hhcceEEEcccCccccccccccccccc--CCCCCCHHH
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEA----EQEKIGLVSKEPIFLFCDFNEGQYIPY--GKQNASDEH 159 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~----~r~~i~~v~Q~~~~~~~~~~~~~~i~~--~~~~~~~~~ 159 (632)
+||+|++|++++|+||||||||||+++|.|+....... .+.+++|++|++. ...++..+....+ .......++
T Consensus 528 vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~ 606 (718)
T PLN03073 528 LNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQK 606 (718)
T ss_pred cEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEecccc-ccCCcchhHHHHHHHhcCCCCHHH
Confidence 89999999999999999999999999999654322211 1346999999863 1222322211111 112234677
Q ss_pred HHHHHHHccchh-----hHhhCCcccccccc-----------------cCCCCHHHHHHHHHHHHHHhCCceEEEEecCc
Q 047286 160 IRPAVQLANAEK-----SIDKLPLGLDTVVA-----------------TNAVDAQSERIVQAAMVKLVTNQTVVIVANCL 217 (632)
Q Consensus 160 ~~~~~~~~~l~~-----~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~ 217 (632)
++++++..++.. .+..||+|++++++ |++||+.+.+.+.+.+.+. +.|+|++||++
T Consensus 607 i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~gtvIivSHd~ 684 (718)
T PLN03073 607 LRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QGGVLMVSHDE 684 (718)
T ss_pred HHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCH
Confidence 888888887752 35779999988883 9999999999999888775 35999999999
Q ss_pred hHHhh-cCeEEEEeCCeEE-EecChhHH
Q 047286 218 ITIRN-ADCIIMVSKGKIV-EKGTHDEL 243 (632)
Q Consensus 218 ~~~~~-aD~i~vl~~G~i~-~~g~~~el 243 (632)
..+.. ||++++|++|+++ ..|++++.
T Consensus 685 ~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 685 HLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred HHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 98875 9999999999998 67777654
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-17 Score=167.59 Aligned_cols=118 Identities=25% Similarity=0.323 Sum_probs=87.4
Q ss_pred ccccEEEeeEEEEEecCCCChHHHHHhhhcCCChhhh------------cHHHH----------------------H---
Q 047286 498 VRGDIVFEHTVALVGENGNGKSTVISLAERFHNPEQV------------IYSWI----------------------I--- 540 (632)
Q Consensus 498 ~~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~~------------~~~~~----------------------~--- 540 (632)
++-+|.-++++||+||||||||||+++|.|+++|++. ..... +
T Consensus 20 is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~ 99 (242)
T cd03295 20 LNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALV 99 (242)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHH
Confidence 3345556679999999999999999999999877430 00000 0
Q ss_pred ------------HHHHHHHhcCCCccCc--ccccCCCCCChHHHHHHHHHHHHhh-------------------------
Q 047286 541 ------------IKCTNFIASLPQGSDL--NVGERGLQLSGGLKQRIARTRARNY------------------------- 581 (632)
Q Consensus 541 ------------~~~~~~i~~lp~g~dt--~vge~G~~LSgGQrQRiaiARA~~~------------------------- 581 (632)
..+.+.+..+ |+.. .......+||||||||++||||++.
T Consensus 100 ~~~~~~~~~~~~~~~~~~l~~l--~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~ 177 (242)
T cd03295 100 PKLLKWPKEKIRERADELLALV--GLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEE 177 (242)
T ss_pred HHHcCCCHHHHHHHHHHHHHHc--CCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHH
Confidence 0122333333 4443 4456678999999999999999554
Q ss_pred ------------hccccchhhh-hcCCEEEEEeCCeEeeecChHHHhcc
Q 047286 582 ------------CGCGSPPYHY-KNADITSVVKNGVIAEKGRHDALMKI 617 (632)
Q Consensus 582 ------------~~iahrl~~~-~~aD~I~vl~~G~ive~G~h~eL~~~ 617 (632)
+++||+++.+ +.||+|++|++|++++.|++++++++
T Consensus 178 L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 226 (242)
T cd03295 178 FKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226 (242)
T ss_pred HHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcC
Confidence 7889999976 56999999999999999999999764
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.3e-17 Score=169.53 Aligned_cols=127 Identities=25% Similarity=0.248 Sum_probs=92.3
Q ss_pred ccccEEEeeEEEEEecCCCChHHHHHhhhcCCChhh---------hc---HHH---H-----------------------
Q 047286 498 VRGDIVFEHTVALVGENGNGKSTVISLAERFHNPEQ---------VI---YSW---I----------------------- 539 (632)
Q Consensus 498 ~~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~~---~~~---~----------------------- 539 (632)
+.-+|.-++.+||+||||||||||+++|.|+++|++ +. ... .
T Consensus 30 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~ 109 (265)
T TIGR02769 30 VSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQ 109 (265)
T ss_pred ceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHHH
Confidence 334566667999999999999999999999987743 00 000 0
Q ss_pred -H----------------HHHHHHHhcCCCccC-cccccCCCCCChHHHHHHHHHHHHhh--------------------
Q 047286 540 -I----------------IKCTNFIASLPQGSD-LNVGERGLQLSGGLKQRIARTRARNY-------------------- 581 (632)
Q Consensus 540 -~----------------~~~~~~i~~lp~g~d-t~vge~G~~LSgGQrQRiaiARA~~~-------------------- 581 (632)
+ ..+.+++..+ |++ ........+||||||||++||||++.
T Consensus 110 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~ 187 (265)
T TIGR02769 110 IIGEPLRHLTSLDESEQKARIAELLDMV--GLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQA 187 (265)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHc--CCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 0 0111222222 453 23456678899999999999999554
Q ss_pred -----------------hccccchhhhh-cCCEEEEEeCCeEeeecChHHHhccCCchhHHHH
Q 047286 582 -----------------CGCGSPPYHYK-NADITSVVKNGVIAEKGRHDALMKITDGTYASLT 626 (632)
Q Consensus 582 -----------------~~iahrl~~~~-~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~ 626 (632)
+++||.+..+. .||+|++|++|++++.|+++++++.++..|+.+.
T Consensus 188 ~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 250 (265)
T TIGR02769 188 VILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLLSFKHPAGRNLQ 250 (265)
T ss_pred HHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCHHHHcCCCCHHHHHHH
Confidence 68899999986 5999999999999999999999975244555554
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.1e-18 Score=163.30 Aligned_cols=133 Identities=23% Similarity=0.313 Sum_probs=99.2
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC-----------------cHHhhcceEEEcccCc--ccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA-----------------PEAEQEKIGLVSKEPI--FLFCDFNEG 145 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~-----------------~~~~r~~i~~v~Q~~~--~~~~~~~~~ 145 (632)
.+||+|++||+++|+||||||||||+++|.|+.... ....++.++|++|++. ++..++.+
T Consensus 10 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~~- 88 (190)
T TIGR01166 10 GLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAADVDQ- 88 (190)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccccHHH-
Confidence 399999999999999999999999999998653210 0124567999999983 45445554
Q ss_pred cccccCC--CCCC----HHHHHHHHHHccchh----hHhhCCccccccc-----------------ccCCCCHHHHHHHH
Q 047286 146 QYIPYGK--QNAS----DEHIRPAVQLANAEK----SIDKLPLGLDTVV-----------------ATNAVDAQSERIVQ 198 (632)
Q Consensus 146 ~~i~~~~--~~~~----~~~~~~~~~~~~l~~----~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~ 198 (632)
|+.+.. ...+ .+++.++++..++.+ .+.+||.|..+++ +|++||+.+++.+.
T Consensus 89 -nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~ 167 (190)
T TIGR01166 89 -DVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQML 167 (190)
T ss_pred -HHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH
Confidence 555431 1112 234567777777654 4567888988877 39999999999999
Q ss_pred HHHHHHh-CCceEEEEecCchH
Q 047286 199 AAMVKLV-TNQTVVIVANCLIT 219 (632)
Q Consensus 199 ~~l~~~~-~~~tviiitH~~~~ 219 (632)
+.|+++. +++|+|++||+++.
T Consensus 168 ~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 168 AILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred HHHHHHHHcCCEEEEEeecccc
Confidence 9999885 47899999999864
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.3e-17 Score=166.98 Aligned_cols=116 Identities=27% Similarity=0.273 Sum_probs=85.4
Q ss_pred ccEEEeeEEEEEecCCCChHHHHHhhhcCCChhhh------------cH--------------------HHHHH------
Q 047286 500 GDIVFEHTVALVGENGNGKSTVISLAERFHNPEQV------------IY--------------------SWIII------ 541 (632)
Q Consensus 500 g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~~------------~~--------------------~~~~~------ 541 (632)
-+|.-++++||+||+|||||||+++|.|++.|++. .. ...+.
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~ 102 (239)
T cd03296 23 LDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVK 102 (239)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHHhhhhhhc
Confidence 34555568999999999999999999999877430 00 00000
Q ss_pred -------------HHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh---------------------------
Q 047286 542 -------------KCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY--------------------------- 581 (632)
Q Consensus 542 -------------~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~--------------------------- 581 (632)
.+.+.+..+ |++........+||||||||++||||+..
T Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~ 180 (239)
T cd03296 103 PRSERPPEAEIRAKVHELLKLV--QLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLR 180 (239)
T ss_pred cccccCCHHHHHHHHHHHHHHc--CChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence 011222222 34444455667899999999999999554
Q ss_pred ----------hccccchhhhh-cCCEEEEEeCCeEeeecChHHHhcc
Q 047286 582 ----------CGCGSPPYHYK-NADITSVVKNGVIAEKGRHDALMKI 617 (632)
Q Consensus 582 ----------~~iahrl~~~~-~aD~I~vl~~G~ive~G~h~eL~~~ 617 (632)
+++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 181 ~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (239)
T cd03296 181 RLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDH 227 (239)
T ss_pred HHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhcC
Confidence 68899999765 5999999999999999999999865
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-17 Score=170.88 Aligned_cols=119 Identities=23% Similarity=0.219 Sum_probs=88.5
Q ss_pred cccccEEEeeEEEEEecCCCChHHHHHhhhcCCChhhh---------c---HHHH-------------------H-HH--
Q 047286 497 TVRGDIVFEHTVALVGENGNGKSTVISLAERFHNPEQV---------I---YSWI-------------------I-IK-- 542 (632)
Q Consensus 497 ~~~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~~---------~---~~~~-------------------~-~~-- 542 (632)
+++-+|.-++++||+|++|||||||+++|+|+++|++. . .... + .+
T Consensus 25 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~ 104 (279)
T PRK13650 25 DVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVA 104 (279)
T ss_pred eeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHH
Confidence 34446666779999999999999999999999987541 0 0000 0 00
Q ss_pred ----------------HHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh-------------------------
Q 047286 543 ----------------CTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY------------------------- 581 (632)
Q Consensus 543 ----------------~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~------------------------- 581 (632)
+.+.+..+ |++........+||||||||++||||+..
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~l~~~--gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~ 182 (279)
T PRK13650 105 FGLENKGIPHEEMKERVNEALELV--GMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKT 182 (279)
T ss_pred hhHHhCCCCHHHHHHHHHHHHHHC--CCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHH
Confidence 01111111 44444455667999999999999999544
Q ss_pred ------------hccccchhhhhcCCEEEEEeCCeEeeecChHHHhcc
Q 047286 582 ------------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKI 617 (632)
Q Consensus 582 ------------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~ 617 (632)
+++||++..+..||+|++|++|++++.|+.+++...
T Consensus 183 l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 183 IKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 688999999889999999999999999999998764
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.3e-17 Score=175.73 Aligned_cols=121 Identities=24% Similarity=0.300 Sum_probs=88.9
Q ss_pred ccEEEeeEEEEEecCCCChHHHHHhhhcCCChhh--hcH-----------HHH---------------------HH----
Q 047286 500 GDIVFEHTVALVGENGNGKSTVISLAERFHNPEQ--VIY-----------SWI---------------------II---- 541 (632)
Q Consensus 500 g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~--~~~-----------~~~---------------------~~---- 541 (632)
-+|.-+++++|+||||||||||+++|.|++.|++ -.. ... +.
T Consensus 26 l~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~ 105 (362)
T TIGR03258 26 LEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLR 105 (362)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHH
Confidence 3455556899999999999999999999988754 100 000 00
Q ss_pred -----------HHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh-----------------------------
Q 047286 542 -----------KCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY----------------------------- 581 (632)
Q Consensus 542 -----------~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~----------------------------- 581 (632)
.+.+.+..+ |++........+||||||||+|||||+..
T Consensus 106 ~~~~~~~~~~~~v~~~l~~~--gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l 183 (362)
T TIGR03258 106 AQKMPKADIAERVADALKLV--GLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAAL 183 (362)
T ss_pred HcCCCHHHHHHHHHHHHHhc--CCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHH
Confidence 111222222 45555556677999999999999999543
Q ss_pred ---------hccccchhhh-hcCCEEEEEeCCeEeeecChHHHhccCCchh
Q 047286 582 ---------CGCGSPPYHY-KNADITSVVKNGVIAEKGRHDALMKITDGTY 622 (632)
Q Consensus 582 ---------~~iahrl~~~-~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y 622 (632)
+++||.++.+ +.||+|+||++|+|++.|+.+|+..++...|
T Consensus 184 ~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~p~~~~ 234 (362)
T TIGR03258 184 HEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAPADGF 234 (362)
T ss_pred HHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcCcHH
Confidence 6779998875 5699999999999999999999998644333
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-17 Score=165.90 Aligned_cols=116 Identities=18% Similarity=0.204 Sum_probs=86.7
Q ss_pred cccEEEeeEEEEEecCCCChHHHHHhhhcCCChhhh------------cHHHH-----------------------H---
Q 047286 499 RGDIVFEHTVALVGENGNGKSTVISLAERFHNPEQV------------IYSWI-----------------------I--- 540 (632)
Q Consensus 499 ~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~~------------~~~~~-----------------------~--- 540 (632)
+-+|.-++++||+||+|||||||+++|.|+++|++. ..... +
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~ 99 (232)
T cd03218 20 SLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAV 99 (232)
T ss_pred eeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHHHHHHHH
Confidence 335555678999999999999999999999877430 00000 0
Q ss_pred ------------HHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh---------------------------
Q 047286 541 ------------IKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY--------------------------- 581 (632)
Q Consensus 541 ------------~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~--------------------------- 581 (632)
..+.+++..+ |++........+||||||||++||||+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~ 177 (232)
T cd03218 100 LEIRGLSKKEREEKLEELLEEF--HITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIK 177 (232)
T ss_pred HHhcCCCHHHHHHHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHH
Confidence 0112333333 55555566778999999999999999654
Q ss_pred ---------hccccchhhh-hcCCEEEEEeCCeEeeecChHHHhc
Q 047286 582 ---------CGCGSPPYHY-KNADITSVVKNGVIAEKGRHDALMK 616 (632)
Q Consensus 582 ---------~~iahrl~~~-~~aD~I~vl~~G~ive~G~h~eL~~ 616 (632)
+++||.+..+ +.||+|++|++|++++.|+++++..
T Consensus 178 ~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 178 ILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred HHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 6889999765 5699999999999999999999875
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-17 Score=162.90 Aligned_cols=142 Identities=18% Similarity=0.204 Sum_probs=108.3
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC--------------cHHhhcceEEEcccCcccc-cccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA--------------PEAEQEKIGLVSKEPIFLF-CDFNEGQYIP 149 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~--------------~~~~r~~i~~v~Q~~~~~~-~~~~~~~~i~ 149 (632)
.+||++++||+++|+||||||||||+++|.|+.... ....+++++|++|++.++. .++.+ |+.
T Consensus 19 ~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~--~~~ 96 (200)
T PRK13540 19 QISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRE--NCL 96 (200)
T ss_pred eeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCHHH--HHH
Confidence 399999999999999999999999999998653211 1234678999999987643 45555 555
Q ss_pred cCCC-CCCHHHHHHHHHHccchh----hHhhCCccccccc-----------------ccCCCCHHHHHHHHHHHHHHh-C
Q 047286 150 YGKQ-NASDEHIRPAVQLANAEK----SIDKLPLGLDTVV-----------------ATNAVDAQSERIVQAAMVKLV-T 206 (632)
Q Consensus 150 ~~~~-~~~~~~~~~~~~~~~l~~----~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l~~~~-~ 206 (632)
++.. .....++.++++..++.+ .+..||.|..+++ +|++||+.+++.+.+.|+++. +
T Consensus 97 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~ 176 (200)
T PRK13540 97 YDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAK 176 (200)
T ss_pred HHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHc
Confidence 4321 122345677777766543 3567889988777 399999999999999999874 4
Q ss_pred CceEEEEecCchHHhhcCeEEE
Q 047286 207 NQTVVIVANCLITIRNADCIIM 228 (632)
Q Consensus 207 ~~tviiitH~~~~~~~aD~i~v 228 (632)
+.|+|++||+...+..||.-.+
T Consensus 177 ~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 177 GGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred CCEEEEEeCCchhccccchhhc
Confidence 7899999999999988997543
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.4e-17 Score=187.50 Aligned_cols=156 Identities=19% Similarity=0.218 Sum_probs=115.1
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHHh----hcceEEEcccCcccccccccccccccCCCC----CCH
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAE----QEKIGLVSKEPIFLFCDFNEGQYIPYGKQN----ASD 157 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~~----r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~----~~~ 157 (632)
+||+|++|++++|+||||||||||+++|+|........+ .-.+||++|++..++...+..+|+.++... ...
T Consensus 338 vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~ 417 (635)
T PRK11147 338 FSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRP 417 (635)
T ss_pred cEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCcccccCCCCCHHHHHHhhcccccccchH
Confidence 899999999999999999999999999996532221111 125999999863333333333355443211 113
Q ss_pred HHHHHHHHHccc-----hhhHhhCCccccccc-----------------ccCCCCHHHHHHHHHHHHHHhCCceEEEEec
Q 047286 158 EHIRPAVQLANA-----EKSIDKLPLGLDTVV-----------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVAN 215 (632)
Q Consensus 158 ~~~~~~~~~~~l-----~~~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l~~~~~~~tviiitH 215 (632)
.++.+.++..++ +..+..||+|.++++ +|++||+.+.+.+.+.++++ +.|+|+|||
T Consensus 418 ~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSH 495 (635)
T PRK11147 418 RHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSH 495 (635)
T ss_pred HHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEEC
Confidence 456667776655 335788999999888 39999999999999999886 459999999
Q ss_pred CchHHhh-cCeEEEEe-CCeEEE-ecChhHH
Q 047286 216 CLITIRN-ADCIIMVS-KGKIVE-KGTHDEL 243 (632)
Q Consensus 216 ~~~~~~~-aD~i~vl~-~G~i~~-~g~~~el 243 (632)
+...+.. ||++++|+ +|++.. .|++++.
T Consensus 496 d~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 496 DRQFVDNTVTECWIFEGNGKIGRYVGGYHDA 526 (635)
T ss_pred CHHHHHHhcCEEEEEeCCCeEEEccCCHHHH
Confidence 9998865 99999998 899876 4665554
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.4e-17 Score=166.01 Aligned_cols=123 Identities=20% Similarity=0.203 Sum_probs=88.4
Q ss_pred ccccEEEeeEEEEEecCCCChHHHHHhhhcCCChh-----h---------hcH----HHH-------------------H
Q 047286 498 VRGDIVFEHTVALVGENGNGKSTVISLAERFHNPE-----Q---------VIY----SWI-------------------I 540 (632)
Q Consensus 498 ~~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~-----~---------~~~----~~~-------------------~ 540 (632)
++-+|.-++++||+|+||||||||+++|.|++.|+ + +.. ... .
T Consensus 20 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~ 99 (247)
T TIGR00972 20 INLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIY 99 (247)
T ss_pred eeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccCCCCHH
Confidence 33456666799999999999999999999999875 3 100 000 0
Q ss_pred HHH-------------------HHHHhcCCCccC----cccccCCCCCChHHHHHHHHHHHHhh----------------
Q 047286 541 IKC-------------------TNFIASLPQGSD----LNVGERGLQLSGGLKQRIARTRARNY---------------- 581 (632)
Q Consensus 541 ~~~-------------------~~~i~~lp~g~d----t~vge~G~~LSgGQrQRiaiARA~~~---------------- 581 (632)
.++ .+.+..+ |++ ........+||||||||++||||+..
T Consensus 100 e~l~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~ 177 (247)
T TIGR00972 100 DNIAYGPRLHGIKDKKELDEIVEESLKKA--ALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDP 177 (247)
T ss_pred HHHHhHHHhcCCCCHHHHHHHHHHHHHHc--CCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 010 0111111 333 33455678999999999999999654
Q ss_pred -------------------hccccchhhhh-cCCEEEEEeCCeEeeecChHHHhccCCchh
Q 047286 582 -------------------CGCGSPPYHYK-NADITSVVKNGVIAEKGRHDALMKITDGTY 622 (632)
Q Consensus 582 -------------------~~iahrl~~~~-~aD~I~vl~~G~ive~G~h~eL~~~~~g~y 622 (632)
++++|++..+. .||+|++|++|+|++.|++++++..+...+
T Consensus 178 ~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~ 238 (247)
T TIGR00972 178 IATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFTNPKEKR 238 (247)
T ss_pred HHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCChH
Confidence 78899999875 699999999999999999999986433433
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.8e-17 Score=170.25 Aligned_cols=120 Identities=23% Similarity=0.259 Sum_probs=89.2
Q ss_pred CcccccEEEeeEEEEEecCCCChHHHHHhhhcCCChhh---------hcH-------HHH--------------------
Q 047286 496 STVRGDIVFEHTVALVGENGNGKSTVISLAERFHNPEQ---------VIY-------SWI-------------------- 539 (632)
Q Consensus 496 ~~~~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~~~-------~~~-------------------- 539 (632)
.++..+|.-++++||+||||||||||+++|+|+++|+. +.. ...
T Consensus 24 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv 103 (286)
T PRK13646 24 HDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTV 103 (286)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccchhhH
Confidence 34444566667999999999999999999999988743 100 000
Q ss_pred ---H---------------HHHHHHHhcCCCccCc-ccccCCCCCChHHHHHHHHHHHHhh-------------------
Q 047286 540 ---I---------------IKCTNFIASLPQGSDL-NVGERGLQLSGGLKQRIARTRARNY------------------- 581 (632)
Q Consensus 540 ---~---------------~~~~~~i~~lp~g~dt-~vge~G~~LSgGQrQRiaiARA~~~------------------- 581 (632)
+ ..+.+.+.. -|+++ .......+||||||||++||||+..
T Consensus 104 ~e~i~~~~~~~~~~~~~~~~~~~~~l~~--~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~ 181 (286)
T PRK13646 104 EREIIFGPKNFKMNLDEVKNYAHRLLMD--LGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSK 181 (286)
T ss_pred HHHHHhhHHHcCCCHHHHHHHHHHHHHH--cCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHH
Confidence 0 011122222 26664 3456788999999999999999544
Q ss_pred ------------------hccccchhhh-hcCCEEEEEeCCeEeeecChHHHhcc
Q 047286 582 ------------------CGCGSPPYHY-KNADITSVVKNGVIAEKGRHDALMKI 617 (632)
Q Consensus 582 ------------------~~iahrl~~~-~~aD~I~vl~~G~ive~G~h~eL~~~ 617 (632)
+++||.+..+ +.||+|++|++|+|++.|+++++.+.
T Consensus 182 ~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 236 (286)
T PRK13646 182 RQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKD 236 (286)
T ss_pred HHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 7889999987 46999999999999999999998874
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=99.72 E-value=3e-17 Score=163.39 Aligned_cols=126 Identities=22% Similarity=0.197 Sum_probs=89.9
Q ss_pred ccEEEeeEEEEEecCCCChHHHHHhhhcCCCh----hh---------hcHHHH---------------------H-HHH-
Q 047286 500 GDIVFEHTVALVGENGNGKSTVISLAERFHNP----EQ---------VIYSWI---------------------I-IKC- 543 (632)
Q Consensus 500 g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~----~~---------~~~~~~---------------------~-~~~- 543 (632)
-+|+-+++++|+||+|||||||+++|+|+++| ++ +..... + .++
T Consensus 7 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~ 86 (230)
T TIGR02770 7 LSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMGNHAI 86 (230)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHHHHHH
Confidence 34555668899999999999999999999987 33 000000 0 000
Q ss_pred -----------------HHHHhcCCCccC---cccccCCCCCChHHHHHHHHHHHHhh----------------------
Q 047286 544 -----------------TNFIASLPQGSD---LNVGERGLQLSGGLKQRIARTRARNY---------------------- 581 (632)
Q Consensus 544 -----------------~~~i~~lp~g~d---t~vge~G~~LSgGQrQRiaiARA~~~---------------------- 581 (632)
.+.+..+ |++ +.......+||||||||++||||+..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l 164 (230)
T TIGR02770 87 ETLRSLGKLSKQARALILEALEAV--GLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARV 164 (230)
T ss_pred HHHHHcCccHHHHHHHHHHHHHHc--CCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHH
Confidence 0111111 222 33456678899999999999999554
Q ss_pred ---------------hccccchhhhh-cCCEEEEEeCCeEeeecChHHHhccCCchhHH-HHH
Q 047286 582 ---------------CGCGSPPYHYK-NADITSVVKNGVIAEKGRHDALMKITDGTYAS-LTA 627 (632)
Q Consensus 582 ---------------~~iahrl~~~~-~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~-l~~ 627 (632)
++++|+++.+. .||+|++|++|++++.|+++++...+.+.|.+ +++
T Consensus 165 ~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~ 227 (230)
T TIGR02770 165 LKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTRKLLS 227 (230)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcCCHHHHHHHH
Confidence 67899999885 69999999999999999999998654455554 443
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.9e-17 Score=176.04 Aligned_cols=125 Identities=21% Similarity=0.306 Sum_probs=90.1
Q ss_pred ccEEEeeEEEEEecCCCChHHHHHhhhcCCChhh---------h---cHHHH----------------------H-H---
Q 047286 500 GDIVFEHTVALVGENGNGKSTVISLAERFHNPEQ---------V---IYSWI----------------------I-I--- 541 (632)
Q Consensus 500 g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~---~~~~~----------------------~-~--- 541 (632)
-+|+-++.++|+||||||||||+++|.|+++|++ + ..... + .
T Consensus 49 l~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~ 128 (400)
T PRK10070 49 LAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTA 128 (400)
T ss_pred EEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHH
Confidence 3555567999999999999999999999998753 0 00000 0 0
Q ss_pred ---------------HHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh-------------------------
Q 047286 542 ---------------KCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY------------------------- 581 (632)
Q Consensus 542 ---------------~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~------------------------- 581 (632)
.+.+.+..+ |++........+||||||||++||||+..
T Consensus 129 ~~~~~~~~~~~~~~~~~~e~L~~~--gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~ 206 (400)
T PRK10070 129 FGMELAGINAEERREKALDALRQV--GLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDE 206 (400)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHc--CCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHH
Confidence 011222222 44444455667899999999999999544
Q ss_pred ------------hccccchhhh-hcCCEEEEEeCCeEeeecChHHHhccCCchh-HHHH
Q 047286 582 ------------CGCGSPPYHY-KNADITSVVKNGVIAEKGRHDALMKITDGTY-ASLT 626 (632)
Q Consensus 582 ------------~~iahrl~~~-~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y-~~l~ 626 (632)
+++||.++.+ +.||+|++|++|+|++.|++++++..+...| +.++
T Consensus 207 L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~~~~~v~~~~ 265 (400)
T PRK10070 207 LVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVRTFF 265 (400)
T ss_pred HHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCcccHHHHHHH
Confidence 6789999887 4699999999999999999999987533333 4444
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1e-17 Score=171.62 Aligned_cols=136 Identities=18% Similarity=0.239 Sum_probs=88.9
Q ss_pred eeCCCEEEEEcCCCchHHHHHHHHHhCCCC------CcHHhhc--------------------------ceEEEcccCcc
Q 047286 90 VPSGTTVALVGQSGSGKSTVINLVESFRFY------APEAEQE--------------------------KIGLVSKEPIF 137 (632)
Q Consensus 90 i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~------~~~~~r~--------------------------~i~~v~Q~~~~ 137 (632)
.++|++++|+||||-||||.+++|.|.... .|..|-. ++-||.--|-.
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk~ 176 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKV 176 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHHH
Confidence 578999999999999999999999864211 1111100 11111111112
Q ss_pred cccccccccccccCCCCCCHHHHHHHHHHcc----chhhHhhCCcccccccc-----------------cCCCCHHHHHH
Q 047286 138 LFCDFNEGQYIPYGKQNASDEHIRPAVQLAN----AEKSIDKLPLGLDTVVA-----------------TNAVDAQSERI 196 (632)
Q Consensus 138 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~----l~~~i~~l~~g~~~~v~-----------------ts~LD~~~~~~ 196 (632)
+.+++.+ .+.-....- ..+++++..+ +++.+.+|++|.-++++ +|-||...+-.
T Consensus 177 ~KG~v~e--lLk~~de~g---~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~ 251 (591)
T COG1245 177 VKGKVGE--LLKKVDERG---KFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLN 251 (591)
T ss_pred hcchHHH--HHHhhhhcC---cHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHH
Confidence 2222221 010000011 2233444444 45678999999988874 88999999999
Q ss_pred HHHHHHHHhC-CceEEEEecCchHHhh-cCeEEEEe
Q 047286 197 VQAAMVKLVT-NQTVVIVANCLITIRN-ADCIIMVS 230 (632)
Q Consensus 197 i~~~l~~~~~-~~tviiitH~~~~~~~-aD~i~vl~ 230 (632)
..+.|+++.+ +++|++|.||+..+.+ +|.|.++-
T Consensus 252 ~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~Y 287 (591)
T COG1245 252 AARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILY 287 (591)
T ss_pred HHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEe
Confidence 9999999976 7999999999999987 99988774
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.4e-17 Score=167.77 Aligned_cols=130 Identities=23% Similarity=0.267 Sum_probs=91.7
Q ss_pred ccccEEEeeEEEEEecCCCChHHHHHhhhcCCChhh---------hc---HHHH------------------------H-
Q 047286 498 VRGDIVFEHTVALVGENGNGKSTVISLAERFHNPEQ---------VI---YSWI------------------------I- 540 (632)
Q Consensus 498 ~~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~~---~~~~------------------------~- 540 (632)
+.-+|+-++++||+||+|||||||+++|+|+++|++ +. .... +
T Consensus 32 vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~ 111 (267)
T PRK15112 32 LSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILD 111 (267)
T ss_pred eeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhHHHHHH
Confidence 333555567999999999999999999999998743 00 0000 0
Q ss_pred ---------------HHHHHHHhcCCCccCc-ccccCCCCCChHHHHHHHHHHHHhh-----------------------
Q 047286 541 ---------------IKCTNFIASLPQGSDL-NVGERGLQLSGGLKQRIARTRARNY----------------------- 581 (632)
Q Consensus 541 ---------------~~~~~~i~~lp~g~dt-~vge~G~~LSgGQrQRiaiARA~~~----------------------- 581 (632)
..+.+.+..+ |++. .......+||||||||++||||+..
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~ 189 (267)
T PRK15112 112 FPLRLNTDLEPEQREKQIIETLRQV--GLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLI 189 (267)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHc--CCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHH
Confidence 0011112211 2221 1122346899999999999999554
Q ss_pred --------------hccccchhhhhc-CCEEEEEeCCeEeeecChHHHhccC-CchhHHHHHhh
Q 047286 582 --------------CGCGSPPYHYKN-ADITSVVKNGVIAEKGRHDALMKIT-DGTYASLTALH 629 (632)
Q Consensus 582 --------------~~iahrl~~~~~-aD~I~vl~~G~ive~G~h~eL~~~~-~g~y~~l~~~~ 629 (632)
+++||+++.+.. ||+|++|++|+|++.|+++++...+ ...|+++++.+
T Consensus 190 ~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (267)
T PRK15112 190 NLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLASPLHELTKRLIAGH 253 (267)
T ss_pred HHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHhcCCCCHHHHHHHHhc
Confidence 788999999976 9999999999999999999998752 35577787654
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.2e-17 Score=172.81 Aligned_cols=66 Identities=17% Similarity=0.080 Sum_probs=56.7
Q ss_pred ccCCCCCChHHHHHHHHHHHHhh-------------------------------------hccccchhhhh-cCCEEEEE
Q 047286 559 GERGLQLSGGLKQRIARTRARNY-------------------------------------CGCGSPPYHYK-NADITSVV 600 (632)
Q Consensus 559 ge~G~~LSgGQrQRiaiARA~~~-------------------------------------~~iahrl~~~~-~aD~I~vl 600 (632)
.....+||||||||++||||+.. +++||.++.++ .||+|+||
T Consensus 153 ~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm 232 (330)
T PRK15093 153 RSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVL 232 (330)
T ss_pred hCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE
Confidence 34556899999999999999544 78899999995 59999999
Q ss_pred eCCeEeeecChHHHhccCCchhHH
Q 047286 601 KNGVIAEKGRHDALMKITDGTYAS 624 (632)
Q Consensus 601 ~~G~ive~G~h~eL~~~~~g~y~~ 624 (632)
++|+|+|.|+.+++.+.+...|.+
T Consensus 233 ~~G~ive~g~~~~i~~~p~~~y~~ 256 (330)
T PRK15093 233 YCGQTVETAPSKELVTTPHHPYTQ 256 (330)
T ss_pred ECCEEEEECCHHHHHhCCCCHHHH
Confidence 999999999999998765556765
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.5e-17 Score=164.54 Aligned_cols=113 Identities=32% Similarity=0.416 Sum_probs=89.0
Q ss_pred cccccEEEeeEEEEEecCCCChHHHHHhhhcCCChhh---------h---cHHH--------------------------
Q 047286 497 TVRGDIVFEHTVALVGENGNGKSTVISLAERFHNPEQ---------V---IYSW-------------------------- 538 (632)
Q Consensus 497 ~~~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~---~~~~-------------------------- 538 (632)
++.-+|.-++.+||+||+|||||||+++|.|+++|++ + ....
T Consensus 22 ~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~ 101 (220)
T cd03245 22 NVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLG 101 (220)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCccccchHHHHhhcC
Confidence 3334555567999999999999999999999976632 0 0000
Q ss_pred -------H------HHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh------------------------
Q 047286 539 -------I------IIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY------------------------ 581 (632)
Q Consensus 539 -------~------~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~------------------------ 581 (632)
. ..++.+.+..+|.|++|.+.....+||||||||++||||+..
T Consensus 102 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~ 181 (220)
T cd03245 102 APLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKE 181 (220)
T ss_pred CCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHH
Confidence 0 002335667788899999988889999999999999999554
Q ss_pred -----------hccccchhhhhcCCEEEEEeCCeEeeec
Q 047286 582 -----------CGCGSPPYHYKNADITSVVKNGVIAEKG 609 (632)
Q Consensus 582 -----------~~iahrl~~~~~aD~I~vl~~G~ive~G 609 (632)
+++||.+..++.||+|++|++|++++.|
T Consensus 182 ~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 182 RLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred HHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 6789999988999999999999999865
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.9e-17 Score=167.73 Aligned_cols=127 Identities=21% Similarity=0.264 Sum_probs=93.3
Q ss_pred cccccEEEeeEEEEEecCCCChHHHHHhhhcCCChhhh-------c----------HHH-----H---------------
Q 047286 497 TVRGDIVFEHTVALVGENGNGKSTVISLAERFHNPEQV-------I----------YSW-----I--------------- 539 (632)
Q Consensus 497 ~~~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~~-------~----------~~~-----~--------------- 539 (632)
++.-+|.-++++||+||+|||||||+++|.|+++|++. . ... .
T Consensus 24 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 103 (258)
T PRK11701 24 DVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLR 103 (258)
T ss_pred eeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCcccccC
Confidence 33445666779999999999999999999999876421 0 000 0
Q ss_pred --------H----------------HHHHHHHhcCCCccC-cccccCCCCCChHHHHHHHHHHHHhh-------------
Q 047286 540 --------I----------------IKCTNFIASLPQGSD-LNVGERGLQLSGGLKQRIARTRARNY------------- 581 (632)
Q Consensus 540 --------~----------------~~~~~~i~~lp~g~d-t~vge~G~~LSgGQrQRiaiARA~~~------------- 581 (632)
+ ..+.+++..+ |++ +.....+.+||||||||++||||+..
T Consensus 104 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~ 181 (258)
T PRK11701 104 MQVSAGGNIGERLMAVGARHYGDIRATAGDWLERV--EIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGG 181 (258)
T ss_pred ccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHc--CCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 0 0112233333 333 34567788999999999999999554
Q ss_pred ------------------------hccccchhhhh-cCCEEEEEeCCeEeeecChHHHhccCCchhHHH
Q 047286 582 ------------------------CGCGSPPYHYK-NADITSVVKNGVIAEKGRHDALMKITDGTYASL 625 (632)
Q Consensus 582 ------------------------~~iahrl~~~~-~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l 625 (632)
+++||+++.+. .||+|++|++|++++.|+++++..++...|.+.
T Consensus 182 LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~~~~~~~~~ 250 (258)
T PRK11701 182 LDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQVLDDPQHPYTQL 250 (258)
T ss_pred CCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcCCCCHHHHH
Confidence 68899999997 599999999999999999999986544446543
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.6e-17 Score=161.06 Aligned_cols=144 Identities=15% Similarity=0.181 Sum_probs=109.3
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC-------c-----HHhhcceEEEcccCcccc-cccccccccccC
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA-------P-----EAEQEKIGLVSKEPIFLF-CDFNEGQYIPYG 151 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~-------~-----~~~r~~i~~v~Q~~~~~~-~~~~~~~~i~~~ 151 (632)
.+||+|++||+++|+||||||||||+++|.|..... . ...++.++|++|++.++. .++.+ |+.+.
T Consensus 20 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~--~l~~~ 97 (207)
T PRK13539 20 GLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAE--NLEFW 97 (207)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHH--HHHHH
Confidence 399999999999999999999999999998653211 0 014667999998876432 34444 55432
Q ss_pred C--CCCCHHHHHHHHHHccchhh----HhhCCccccccc-----------------ccCCCCHHHHHHHHHHHHHHh-CC
Q 047286 152 K--QNASDEHIRPAVQLANAEKS----IDKLPLGLDTVV-----------------ATNAVDAQSERIVQAAMVKLV-TN 207 (632)
Q Consensus 152 ~--~~~~~~~~~~~~~~~~l~~~----i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l~~~~-~~ 207 (632)
. .....+++.++++..++.+. ...+|.|..+++ +|++||+.+++.+.+.|+++. ++
T Consensus 98 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~ 177 (207)
T PRK13539 98 AAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQG 177 (207)
T ss_pred HHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCC
Confidence 1 11234567888888887543 457888988877 399999999999999999874 57
Q ss_pred ceEEEEecCchHHhhcCeEEEEeC
Q 047286 208 QTVVIVANCLITIRNADCIIMVSK 231 (632)
Q Consensus 208 ~tviiitH~~~~~~~aD~i~vl~~ 231 (632)
.|+|++||+...+.. |+++-++.
T Consensus 178 ~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 178 GIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred CEEEEEeCCchhhcc-CcEEeecC
Confidence 899999999999887 99987754
|
|
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.4e-17 Score=151.40 Aligned_cols=161 Identities=16% Similarity=0.286 Sum_probs=124.2
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC--------C---------cHHhhcceEEEcccCccccc-cccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY--------A---------PEAEQEKIGLVSKEPIFLFC-DFNEGQ 146 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~--------~---------~~~~r~~i~~v~Q~~~~~~~-~~~~~~ 146 (632)
++||++.+||.-+|+||||+||||++..|.|.... + ..-.|..||--+|.|..|.. ++.+
T Consensus 23 ~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~e-- 100 (249)
T COG4674 23 DLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRE-- 100 (249)
T ss_pred eeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCeehhhccHHH--
Confidence 49999999999999999999999999999754211 1 11246679999999986643 3444
Q ss_pred ccccC--C------------CCCCHHHHHHHHHHccchhh----HhhCCccccccc-----------------ccCCCCH
Q 047286 147 YIPYG--K------------QNASDEHIRPAVQLANAEKS----IDKLPLGLDTVV-----------------ATNAVDA 191 (632)
Q Consensus 147 ~i~~~--~------------~~~~~~~~~~~~~~~~l~~~----i~~l~~g~~~~v-----------------~ts~LD~ 191 (632)
|+... . .....+++++++...++.+. ...|++|.++.+ +++|+-.
T Consensus 101 NLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd 180 (249)
T COG4674 101 NLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTD 180 (249)
T ss_pred HHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeeccCCcEEEecCccCCCcH
Confidence 43321 1 11234578888888876543 457889988766 3778766
Q ss_pred HHHHHHHHHHHHHhCCceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcCC
Q 047286 192 QSERIVQAAMVKLVTNQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIEDP 247 (632)
Q Consensus 192 ~~~~~i~~~l~~~~~~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~~ 247 (632)
......-+.++.+..++++++|.||+..++. ||+|-||+.|.+.++|+.+++.+++
T Consensus 181 ~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld~v~~dp 237 (249)
T COG4674 181 AETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQNDP 237 (249)
T ss_pred HHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeecccHHHhhcCc
Confidence 6677788889999889999999999999976 9999999999999999999997664
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.4e-17 Score=165.31 Aligned_cols=127 Identities=20% Similarity=0.244 Sum_probs=90.3
Q ss_pred ccccEEEeeEEEEEecCCCChHHHHHhhhcCCChhhh------------cHHHH-----------------H--------
Q 047286 498 VRGDIVFEHTVALVGENGNGKSTVISLAERFHNPEQV------------IYSWI-----------------I-------- 540 (632)
Q Consensus 498 ~~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~~------------~~~~~-----------------~-------- 540 (632)
+.-+|.-++++||+||||||||||+++|.|+++|++. ..... +
T Consensus 22 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~ 101 (241)
T PRK14250 22 ISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGP 101 (241)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhchhhHHHHHhcch
Confidence 3335555668999999999999999999999877430 00000 0
Q ss_pred -------HHHHHHHhcCCCccC-cccccCCCCCChHHHHHHHHHHHHhh-------------------------------
Q 047286 541 -------IKCTNFIASLPQGSD-LNVGERGLQLSGGLKQRIARTRARNY------------------------------- 581 (632)
Q Consensus 541 -------~~~~~~i~~lp~g~d-t~vge~G~~LSgGQrQRiaiARA~~~------------------------------- 581 (632)
..+.+++..+ |++ ........+||||||||++||||+..
T Consensus 102 ~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 179 (241)
T PRK14250 102 MLKGEKNVDVEYYLSIV--GLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKN 179 (241)
T ss_pred hhcCcHHHHHHHHHHHc--CCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 0111222222 332 12345667899999999999999554
Q ss_pred ------hccccchhhhh-cCCEEEEEeCCeEeeecChHHHhccCCchhHHHH
Q 047286 582 ------CGCGSPPYHYK-NADITSVVKNGVIAEKGRHDALMKITDGTYASLT 626 (632)
Q Consensus 582 ------~~iahrl~~~~-~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~ 626 (632)
+++||.+..+. .||+|++|++|++++.|+.+++...+...|...+
T Consensus 180 ~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~ 231 (241)
T PRK14250 180 KMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVTKLF 231 (241)
T ss_pred hCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCCCcHHHHHH
Confidence 68899999876 5999999999999999999999875333455443
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.3e-17 Score=165.06 Aligned_cols=116 Identities=22% Similarity=0.195 Sum_probs=84.3
Q ss_pred ccEEEeeEEEEEecCCCChHHHHHhhhcCCChhh------------hcHHHH-----------------------HH---
Q 047286 500 GDIVFEHTVALVGENGNGKSTVISLAERFHNPEQ------------VIYSWI-----------------------II--- 541 (632)
Q Consensus 500 g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~------------~~~~~~-----------------------~~--- 541 (632)
-+|.-++++||+||||||||||+++|.|++.|++ ...... +.
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~ 100 (222)
T cd03224 21 LTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGA 100 (222)
T ss_pred EEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHh
Confidence 3555567999999999999999999999987743 000000 00
Q ss_pred ----------HHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh------------------------------
Q 047286 542 ----------KCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY------------------------------ 581 (632)
Q Consensus 542 ----------~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~------------------------------ 581 (632)
.+.+++..++ +++........+||||||||++||||+..
T Consensus 101 ~~~~~~~~~~~~~~~l~~~~-~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 179 (222)
T cd03224 101 YARRRAKRKARLERVYELFP-RLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELR 179 (222)
T ss_pred hhcCchhHHHHHHHHHHHHH-hhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHH
Confidence 1112222221 23334445667899999999999999654
Q ss_pred ------hccccchhhhh-cCCEEEEEeCCeEeeecChHHHhc
Q 047286 582 ------CGCGSPPYHYK-NADITSVVKNGVIAEKGRHDALMK 616 (632)
Q Consensus 582 ------~~iahrl~~~~-~aD~I~vl~~G~ive~G~h~eL~~ 616 (632)
+++||.++.+. .||+|++|++|++++.|+.+++..
T Consensus 180 ~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 180 DEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred HCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 78899999865 599999999999999999998864
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=99.71 E-value=2e-17 Score=164.09 Aligned_cols=144 Identities=19% Similarity=0.172 Sum_probs=105.6
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC-------C------c------HH---h-hcceEEEcccCcccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY-------A------P------EA---E-QEKIGLVSKEPIFLFCD 141 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~-------~------~------~~---~-r~~i~~v~Q~~~~~~~~ 141 (632)
.+||+|++||+++|+||||||||||+++|.|+... + . .. . ++.++|++|++.++..
T Consensus 26 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~- 104 (224)
T TIGR02324 26 NVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPR- 104 (224)
T ss_pred cceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccccCCC-
Confidence 39999999999999999999999999999865211 0 0 00 1 3469999999875542
Q ss_pred cccccccccCC--CCC----CHHHHHHHHHHccchh-----hHhhCCccccccc-----------------ccCCCCHHH
Q 047286 142 FNEGQYIPYGK--QNA----SDEHIRPAVQLANAEK-----SIDKLPLGLDTVV-----------------ATNAVDAQS 193 (632)
Q Consensus 142 ~~~~~~i~~~~--~~~----~~~~~~~~~~~~~l~~-----~i~~l~~g~~~~v-----------------~ts~LD~~~ 193 (632)
.+..+|+.+.. ... ..+++.++++..++.+ .+..||.|..+++ +|++||+.+
T Consensus 105 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~ 184 (224)
T TIGR02324 105 VSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAAN 184 (224)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 22222443210 011 1345566777776643 3567888988777 399999999
Q ss_pred HHHHHHHHHHHh-CCceEEEEecCchHHh-hcCeEEEE
Q 047286 194 ERIVQAAMVKLV-TNQTVVIVANCLITIR-NADCIIMV 229 (632)
Q Consensus 194 ~~~i~~~l~~~~-~~~tviiitH~~~~~~-~aD~i~vl 229 (632)
++.+.+.|+++. ++.|+|++||+++.+. .||+++.+
T Consensus 185 ~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 185 RQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 999999999985 4789999999998886 59999876
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.4e-17 Score=165.42 Aligned_cols=117 Identities=23% Similarity=0.315 Sum_probs=88.2
Q ss_pred cccEEEeeEEEEEecCCCChHHHHHhhhcCCChhh---------hc-------------H---HHH--------------
Q 047286 499 RGDIVFEHTVALVGENGNGKSTVISLAERFHNPEQ---------VI-------------Y---SWI-------------- 539 (632)
Q Consensus 499 ~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~~-------------~---~~~-------------- 539 (632)
.-+|.-++++||+||||||||||+++|.|++.|++ +. . ...
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 99 (252)
T TIGR03005 20 NFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLF 99 (252)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEEEecCcccC
Confidence 33555567999999999999999999999987743 10 0 000
Q ss_pred --------H----------------HHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh--------------
Q 047286 540 --------I----------------IKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY-------------- 581 (632)
Q Consensus 540 --------~----------------~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~-------------- 581 (632)
+ ..+.+.+..+ |++........+||||||||++||||+..
T Consensus 100 ~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~L 177 (252)
T TIGR03005 100 PHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMV--GLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSAL 177 (252)
T ss_pred CCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc--CChhHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccC
Confidence 0 0112233332 45555566778999999999999999554
Q ss_pred -----------------------hccccchhhhh-cCCEEEEEeCCeEeeecChHHHhcc
Q 047286 582 -----------------------CGCGSPPYHYK-NADITSVVKNGVIAEKGRHDALMKI 617 (632)
Q Consensus 582 -----------------------~~iahrl~~~~-~aD~I~vl~~G~ive~G~h~eL~~~ 617 (632)
+++||++..+. .||+|++|++|++++.|+++++.+.
T Consensus 178 D~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 237 (252)
T TIGR03005 178 DPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIFRQ 237 (252)
T ss_pred CHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcC
Confidence 68899999884 6999999999999999999999865
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.1e-17 Score=163.35 Aligned_cols=113 Identities=18% Similarity=0.214 Sum_probs=81.1
Q ss_pred ccEEEeeEEEEEecCCCChHHHHHhhhcCCChhhh---------c---HHHH---------------------H------
Q 047286 500 GDIVFEHTVALVGENGNGKSTVISLAERFHNPEQV---------I---YSWI---------------------I------ 540 (632)
Q Consensus 500 g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~~---------~---~~~~---------------------~------ 540 (632)
-+|.-++++||+||+|||||||+++|.|++.|++. . .... +
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 100 (220)
T cd03265 21 FRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARL 100 (220)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHHHHHHHHH
Confidence 34555568999999999999999999999877430 0 0000 0
Q ss_pred ---------HHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh------------------------------
Q 047286 541 ---------IKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY------------------------------ 581 (632)
Q Consensus 541 ---------~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~------------------------------ 581 (632)
..+.+.+..+ |++........+||||||||++||||++.
T Consensus 101 ~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 178 (220)
T cd03265 101 YGVPGAERRERIDELLDFV--GLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLK 178 (220)
T ss_pred cCCCHHHHHHHHHHHHHHc--CCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHH
Confidence 0111222222 33333334456899999999999999554
Q ss_pred -------hccccchhhhh-cCCEEEEEeCCeEeeecChHHH
Q 047286 582 -------CGCGSPPYHYK-NADITSVVKNGVIAEKGRHDAL 614 (632)
Q Consensus 582 -------~~iahrl~~~~-~aD~I~vl~~G~ive~G~h~eL 614 (632)
+++||+++.+. .||+|++|++|+|++.|+.+++
T Consensus 179 ~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 179 EEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred HhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 77899999876 5999999999999999998875
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.7e-17 Score=164.91 Aligned_cols=118 Identities=25% Similarity=0.295 Sum_probs=88.1
Q ss_pred ccccEEEeeEEEEEecCCCChHHHHHhhhcCCChhh---------hc---H--HHH----------------------H-
Q 047286 498 VRGDIVFEHTVALVGENGNGKSTVISLAERFHNPEQ---------VI---Y--SWI----------------------I- 540 (632)
Q Consensus 498 ~~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~~---~--~~~----------------------~- 540 (632)
+.-+|.-++++||+||+|||||||+++|.|++.|++ +. . ... +
T Consensus 20 ~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~ 99 (240)
T PRK09493 20 IDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVM 99 (240)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHH
Confidence 333555567999999999999999999999987743 00 0 000 0
Q ss_pred ---------------HHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh------------------------
Q 047286 541 ---------------IKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY------------------------ 581 (632)
Q Consensus 541 ---------------~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~------------------------ 581 (632)
..+.+.+..+ |++.........||||||||++||||+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~ 177 (240)
T PRK09493 100 FGPLRVRGASKEEAEKQARELLAKV--GLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLK 177 (240)
T ss_pred hHHHHhcCCCHHHHHHHHHHHHHHc--CChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 0111223332 55555556677899999999999999654
Q ss_pred ------------hccccchhhhh-cCCEEEEEeCCeEeeecChHHHhcc
Q 047286 582 ------------CGCGSPPYHYK-NADITSVVKNGVIAEKGRHDALMKI 617 (632)
Q Consensus 582 ------------~~iahrl~~~~-~aD~I~vl~~G~ive~G~h~eL~~~ 617 (632)
+++||++..+. .||+|++|++|++++.|+++++++.
T Consensus 178 ~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 178 VMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 78899999985 5999999999999999999999864
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.5e-17 Score=150.30 Aligned_cols=122 Identities=25% Similarity=0.252 Sum_probs=82.0
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHHh----hcceEEEcccCcccccccccccccccCCCCCCHHHH
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAE----QEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHI 160 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~~----r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~~~~ 160 (632)
.++|++++||+++|+||||||||||+++|.|+......++ +..++|++| .+.-+.
T Consensus 18 ~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~---------------------lS~G~~ 76 (144)
T cd03221 18 DISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQ---------------------LSGGEK 76 (144)
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEcc---------------------CCHHHH
Confidence 3899999999999999999999999999985532221111 235667766 011111
Q ss_pred HHHHHHccchhhHhhCCcccccccccCCCCHHHHHHHHHHHHHHhCCceEEEEecCchHHhh-cCeEEEEeCCe
Q 047286 161 RPAVQLANAEKSIDKLPLGLDTVVATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRN-ADCIIMVSKGK 233 (632)
Q Consensus 161 ~~~~~~~~l~~~i~~l~~g~~~~v~ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~-aD~i~vl~~G~ 233 (632)
+++. +..-+..-|.=+---=++++||+.++..+.+.++++ ++|++++||+++.+.. ||++++|++|+
T Consensus 77 ~rv~----laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 77 MRLA----LAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred HHHH----HHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 1110 000111111000000048999999999999999887 4799999999998865 99999999985
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.3e-17 Score=165.94 Aligned_cols=124 Identities=24% Similarity=0.252 Sum_probs=92.4
Q ss_pred ccEEEeeEEEEEecCCCChHHHHHhhhcCCChhh---------hc---HH---HH------------------------H
Q 047286 500 GDIVFEHTVALVGENGNGKSTVISLAERFHNPEQ---------VI---YS---WI------------------------I 540 (632)
Q Consensus 500 g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~~---~~---~~------------------------~ 540 (632)
-+|.-+++++|+||+|||||||+++|.|+++|++ +. .. .. +
T Consensus 33 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l 112 (268)
T PRK10419 33 LSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREII 112 (268)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHH
Confidence 3455556999999999999999999999987743 00 00 00 0
Q ss_pred ----------------HHHHHHHhcCCCccCc-ccccCCCCCChHHHHHHHHHHHHhh----------------------
Q 047286 541 ----------------IKCTNFIASLPQGSDL-NVGERGLQLSGGLKQRIARTRARNY---------------------- 581 (632)
Q Consensus 541 ----------------~~~~~~i~~lp~g~dt-~vge~G~~LSgGQrQRiaiARA~~~---------------------- 581 (632)
..+.+.+..+ |+++ ........||||||||++||||++.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~ 190 (268)
T PRK10419 113 REPLRHLLSLDKAERLARASEMLRAV--DLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGV 190 (268)
T ss_pred HHHHHhhccCCHHHHHHHHHHHHHHc--CCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHH
Confidence 0122333333 5653 4566778999999999999999554
Q ss_pred ---------------hccccchhhhh-cCCEEEEEeCCeEeeecChHHHhccCCchhHHHH
Q 047286 582 ---------------CGCGSPPYHYK-NADITSVVKNGVIAEKGRHDALMKITDGTYASLT 626 (632)
Q Consensus 582 ---------------~~iahrl~~~~-~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~ 626 (632)
+++||++..+. .||+|++|++|++++.|+++++... ++.|..-+
T Consensus 191 ~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~~-~~~~~~~~ 250 (268)
T PRK10419 191 IRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDKLTF-SSPAGRVL 250 (268)
T ss_pred HHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCChhhccCC-CCHHHHHH
Confidence 78899999987 5999999999999999999999975 66665443
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.5e-17 Score=165.47 Aligned_cols=117 Identities=26% Similarity=0.246 Sum_probs=84.9
Q ss_pred cccccEEEeeEEEEEecCCCChHHHHHhhhcCCChhh---------h---cH---HHH------------------H-HH
Q 047286 497 TVRGDIVFEHTVALVGENGNGKSTVISLAERFHNPEQ---------V---IY---SWI------------------I-IK 542 (632)
Q Consensus 497 ~~~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~---~~---~~~------------------~-~~ 542 (632)
+++-+|.-++++||+||+|||||||+++|.|+++|++ + .. ... + .+
T Consensus 20 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~ 99 (243)
T TIGR02315 20 NINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLEN 99 (243)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccHHHH
Confidence 3334556667999999999999999999999987743 0 00 000 0 00
Q ss_pred --------------------------HHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh---------------
Q 047286 543 --------------------------CTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY--------------- 581 (632)
Q Consensus 543 --------------------------~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~--------------- 581 (632)
+.+.+..+ |++........+||||||||++||||+..
T Consensus 100 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD 177 (243)
T TIGR02315 100 VLHGRLGYKPTWRSLLGRFSEEDKERALSALERV--GLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLD 177 (243)
T ss_pred HhhcccccccchhhhhccccHHHHHHHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 01111111 33334455678899999999999999554
Q ss_pred ----------------------hccccchhhhh-cCCEEEEEeCCeEeeecChHHHh
Q 047286 582 ----------------------CGCGSPPYHYK-NADITSVVKNGVIAEKGRHDALM 615 (632)
Q Consensus 582 ----------------------~~iahrl~~~~-~aD~I~vl~~G~ive~G~h~eL~ 615 (632)
+++||++..+. .||+|++|++|++++.|+++++.
T Consensus 178 ~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (243)
T TIGR02315 178 PKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSELD 234 (243)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHhC
Confidence 67899999884 69999999999999999999974
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.7e-17 Score=173.49 Aligned_cols=116 Identities=22% Similarity=0.256 Sum_probs=87.2
Q ss_pred cEEEeeEEEEEecCCCChHHHHHhhhcCCChhh---------hc-------H-HHH---------------------H--
Q 047286 501 DIVFEHTVALVGENGNGKSTVISLAERFHNPEQ---------VI-------Y-SWI---------------------I-- 540 (632)
Q Consensus 501 ~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~~-------~-~~~---------------------~-- 540 (632)
+|.-++.+||+||||||||||+++|.|+++|++ +. . ... +
T Consensus 20 ~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~ 99 (352)
T PRK11144 20 TLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRY 99 (352)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHHHh
Confidence 344456899999999999999999999988753 00 0 000 0
Q ss_pred -------HHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh--------------------------------
Q 047286 541 -------IKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY-------------------------------- 581 (632)
Q Consensus 541 -------~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~-------------------------------- 581 (632)
..+.+.+..+ |++........+||||||||++||||+..
T Consensus 100 ~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~ 177 (352)
T PRK11144 100 GMAKSMVAQFDKIVALL--GIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLARE 177 (352)
T ss_pred hhhhhhHHHHHHHHHHc--CCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh
Confidence 0112233332 45555556678999999999999999544
Q ss_pred -----hccccchhhhh-cCCEEEEEeCCeEeeecChHHHhccC
Q 047286 582 -----CGCGSPPYHYK-NADITSVVKNGVIAEKGRHDALMKIT 618 (632)
Q Consensus 582 -----~~iahrl~~~~-~aD~I~vl~~G~ive~G~h~eL~~~~ 618 (632)
+++||.++.+. .||+|++|++|+|++.|+++++..++
T Consensus 178 ~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p 220 (352)
T PRK11144 178 INIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASS 220 (352)
T ss_pred cCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCc
Confidence 78899998764 59999999999999999999999863
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.9e-17 Score=164.81 Aligned_cols=115 Identities=26% Similarity=0.233 Sum_probs=84.4
Q ss_pred ccEEEeeEEEEEecCCCChHHHHHhhhcCCChhh---------h---c---HHHH------------------H-HH---
Q 047286 500 GDIVFEHTVALVGENGNGKSTVISLAERFHNPEQ---------V---I---YSWI------------------I-IK--- 542 (632)
Q Consensus 500 g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~---~---~~~~------------------~-~~--- 542 (632)
-+|.-++++||+||||||||||+++|.|+++|++ + . .... + .+
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~ 101 (241)
T cd03256 22 LSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLS 101 (241)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcHHHHHHh
Confidence 3455566899999999999999999999987743 0 0 0000 0 00
Q ss_pred -----------------------HHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh------------------
Q 047286 543 -----------------------CTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY------------------ 581 (632)
Q Consensus 543 -----------------------~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~------------------ 581 (632)
+.+.+..+ |++........+||||||||++||||+..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~ 179 (241)
T cd03256 102 GRLGRRSTWRSLFGLFPKEEKQRALAALERV--GLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPAS 179 (241)
T ss_pred hhcccchhhhhhcccCcHHHHHHHHHHHHHc--CChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 01112221 34334455678999999999999999554
Q ss_pred -------------------hccccchhhhh-cCCEEEEEeCCeEeeecChHHHhc
Q 047286 582 -------------------CGCGSPPYHYK-NADITSVVKNGVIAEKGRHDALMK 616 (632)
Q Consensus 582 -------------------~~iahrl~~~~-~aD~I~vl~~G~ive~G~h~eL~~ 616 (632)
+++||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 180 ~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 234 (241)
T cd03256 180 SRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELTD 234 (241)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHHhhH
Confidence 68899999987 799999999999999999999743
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.6e-17 Score=184.20 Aligned_cols=151 Identities=16% Similarity=0.175 Sum_probs=114.0
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHH--hhcceEEEcccCcccc-cccccccccccCCCCC-CHHHHH
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEA--EQEKIGLVSKEPIFLF-CDFNEGQYIPYGKQNA-SDEHIR 161 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~--~r~~i~~v~Q~~~~~~-~~~~~~~~i~~~~~~~-~~~~~~ 161 (632)
++++|++||+++|+||||||||||+++|.|+...+... +...++|++|++.++. .++.+ |+.++.... ......
T Consensus 358 ~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~~tv~e--~l~~~~~~~~~~~~~~ 435 (590)
T PRK13409 358 EGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDYDGTVED--LLRSITDDLGSSYYKS 435 (590)
T ss_pred cceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCCCCCcHHH--HHHHHhhhcChHHHHH
Confidence 67788999999999999999999999999654322111 1246899999976432 23433 555432111 233456
Q ss_pred HHHHHccchh----hHhhCCcccccccc-----------------cCCCCHHHHHHHHHHHHHHhC--CceEEEEecCch
Q 047286 162 PAVQLANAEK----SIDKLPLGLDTVVA-----------------TNAVDAQSERIVQAAMVKLVT--NQTVVIVANCLI 218 (632)
Q Consensus 162 ~~~~~~~l~~----~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~~l~~~~~--~~tviiitH~~~ 218 (632)
++++..++.+ .+.+||+|.+++++ |++||+.++..+.+.|+++.+ ++|+|++|||+.
T Consensus 436 ~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~ 515 (590)
T PRK13409 436 EIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY 515 (590)
T ss_pred HHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 7777777643 46789999988883 999999999999999999853 789999999999
Q ss_pred HHhh-cCeEEEEeCCeEEEecC
Q 047286 219 TIRN-ADCIIMVSKGKIVEKGT 239 (632)
Q Consensus 219 ~~~~-aD~i~vl~~G~i~~~g~ 239 (632)
.+.. ||++++|++ ++...|+
T Consensus 516 ~~~~~aDrvivl~~-~~~~~g~ 536 (590)
T PRK13409 516 MIDYISDRLMVFEG-EPGKHGH 536 (590)
T ss_pred HHHHhCCEEEEEcC-cceeeee
Confidence 8865 999999965 8877776
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.7e-17 Score=167.98 Aligned_cols=118 Identities=26% Similarity=0.286 Sum_probs=87.1
Q ss_pred cccccEEEeeEEEEEecCCCChHHHHHhhhcCCChhh---------hc-----HHHH-------------------H-HH
Q 047286 497 TVRGDIVFEHTVALVGENGNGKSTVISLAERFHNPEQ---------VI-----YSWI-------------------I-IK 542 (632)
Q Consensus 497 ~~~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~~-----~~~~-------------------~-~~ 542 (632)
+++.+|.-++++||+||+|||||||+++|.|+++|++ +. .... + .+
T Consensus 25 ~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~ 104 (287)
T PRK13637 25 NVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKD 104 (287)
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccHHHH
Confidence 3444666667999999999999999999999987743 00 0000 0 00
Q ss_pred ------------------HHHHHhcCCCccC--cccccCCCCCChHHHHHHHHHHHHhh---------------------
Q 047286 543 ------------------CTNFIASLPQGSD--LNVGERGLQLSGGLKQRIARTRARNY--------------------- 581 (632)
Q Consensus 543 ------------------~~~~i~~lp~g~d--t~vge~G~~LSgGQrQRiaiARA~~~--------------------- 581 (632)
+.+.+..+ |++ +.......+||||||||++||||+..
T Consensus 105 l~~~~~~~~~~~~~~~~~~~~~l~~~--gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~ 182 (287)
T PRK13637 105 IAFGPINLGLSEEEIENRVKRAMNIV--GLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDE 182 (287)
T ss_pred HHhHHHHCCCCHHHHHHHHHHHHHHc--CCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHH
Confidence 11112221 443 34556678999999999999999544
Q ss_pred ----------------hccccchhhh-hcCCEEEEEeCCeEeeecChHHHhc
Q 047286 582 ----------------CGCGSPPYHY-KNADITSVVKNGVIAEKGRHDALMK 616 (632)
Q Consensus 582 ----------------~~iahrl~~~-~~aD~I~vl~~G~ive~G~h~eL~~ 616 (632)
+++||.+..+ +.||+|++|++|++++.|+.+++.+
T Consensus 183 l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13637 183 ILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFK 234 (287)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 7789999987 5699999999999999999999875
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.1e-17 Score=173.29 Aligned_cols=117 Identities=26% Similarity=0.287 Sum_probs=87.4
Q ss_pred cEEEeeEEEEEecCCCChHHHHHhhhcCCChhh---------hc-------H-HHH---------------------HH-
Q 047286 501 DIVFEHTVALVGENGNGKSTVISLAERFHNPEQ---------VI-------Y-SWI---------------------II- 541 (632)
Q Consensus 501 ~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~~-------~-~~~---------------------~~- 541 (632)
+|.-+++++|+||||||||||+++|.|+++|++ +. . ... +.
T Consensus 19 ~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~ 98 (354)
T TIGR02142 19 TLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRY 98 (354)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHHHHH
Confidence 344456899999999999999999999988743 00 0 000 00
Q ss_pred ------------HHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh----------------------------
Q 047286 542 ------------KCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY---------------------------- 581 (632)
Q Consensus 542 ------------~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~---------------------------- 581 (632)
.+.+.+..+ |++........+||||||||++||||+..
T Consensus 99 ~~~~~~~~~~~~~~~~~l~~~--gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~ 176 (354)
T TIGR02142 99 GMKRARPSERRISFERVIELL--GIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLER 176 (354)
T ss_pred HhhccChhHHHHHHHHHHHHc--CChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHH
Confidence 012223322 45555566678999999999999999554
Q ss_pred ---------hccccchhhhh-cCCEEEEEeCCeEeeecChHHHhccCC
Q 047286 582 ---------CGCGSPPYHYK-NADITSVVKNGVIAEKGRHDALMKITD 619 (632)
Q Consensus 582 ---------~~iahrl~~~~-~aD~I~vl~~G~ive~G~h~eL~~~~~ 619 (632)
+++||.+..+. .||+|++|++|+|++.|+++++...++
T Consensus 177 l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 224 (354)
T TIGR02142 177 LHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPD 224 (354)
T ss_pred HHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCcC
Confidence 78899999875 599999999999999999999987643
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.4e-17 Score=162.23 Aligned_cols=69 Identities=23% Similarity=0.213 Sum_probs=58.9
Q ss_pred ccccCCCCCChHHHHHHHHHHHHhh-------------------------------------hccccchhhhh-cCCEEE
Q 047286 557 NVGERGLQLSGGLKQRIARTRARNY-------------------------------------CGCGSPPYHYK-NADITS 598 (632)
Q Consensus 557 ~vge~G~~LSgGQrQRiaiARA~~~-------------------------------------~~iahrl~~~~-~aD~I~ 598 (632)
.+..-..+||||||||+.||=|+.. +.|||.+..+. -||+|+
T Consensus 146 ~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~ 225 (316)
T COG0444 146 RLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVA 225 (316)
T ss_pred HHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEE
Confidence 4556678999999999999999433 89999999884 799999
Q ss_pred EEeCCeEeeecChHHHhccCCchhHHH
Q 047286 599 VVKNGVIAEKGRHDALMKITDGTYASL 625 (632)
Q Consensus 599 vl~~G~ive~G~h~eL~~~~~g~y~~l 625 (632)
||.+|+|||+|+-+++.+++.-.|.+.
T Consensus 226 VMYaG~iVE~g~~~~i~~~P~HPYT~~ 252 (316)
T COG0444 226 VMYAGRIVEEGPVEEIFKNPKHPYTRG 252 (316)
T ss_pred EEECcEEEEeCCHHHHhcCCCChHHHH
Confidence 999999999999999998866566543
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.9e-17 Score=162.94 Aligned_cols=120 Identities=24% Similarity=0.231 Sum_probs=86.5
Q ss_pred ccccEEEeeEEEEEecCCCChHHHHHhhhcCCChhh---------hc--H-HHHHH-----------------HHHHHHh
Q 047286 498 VRGDIVFEHTVALVGENGNGKSTVISLAERFHNPEQ---------VI--Y-SWIII-----------------KCTNFIA 548 (632)
Q Consensus 498 ~~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~~--~-~~~~~-----------------~~~~~i~ 548 (632)
..-+|+-++.++|+|+||||||||+++|.|++.|+. .. . ...+. ...+.|.
T Consensus 23 v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~eva 102 (235)
T COG1122 23 VSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVA 102 (235)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHh
Confidence 334555566999999999999999999999998864 00 0 00000 0001111
Q ss_pred cCC--------------------CccCcccccCCCCCChHHHHHHHHHHHHhh---------------------------
Q 047286 549 SLP--------------------QGSDLNVGERGLQLSGGLKQRIARTRARNY--------------------------- 581 (632)
Q Consensus 549 ~lp--------------------~g~dt~vge~G~~LSgGQrQRiaiARA~~~--------------------------- 581 (632)
--| -|+.........+||||||||+|||-++..
T Consensus 103 fg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~ 182 (235)
T COG1122 103 FGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLK 182 (235)
T ss_pred hchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 101 033333445667999999999999999432
Q ss_pred ----------hccccchhhhhc-CCEEEEEeCCeEeeecChHHHhcc
Q 047286 582 ----------CGCGSPPYHYKN-ADITSVVKNGVIAEKGRHDALMKI 617 (632)
Q Consensus 582 ----------~~iahrl~~~~~-aD~I~vl~~G~ive~G~h~eL~~~ 617 (632)
|++||++..+.. ||+++||++|+++.+|+++|+.+.
T Consensus 183 ~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 183 KLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred HHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 788999999987 999999999999999999999875
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.1e-17 Score=161.49 Aligned_cols=107 Identities=28% Similarity=0.270 Sum_probs=86.6
Q ss_pred ccccEEEeeEEEEEecCCCChHHHHHhhhcCCChhhh--------------------------------cHHH--H---H
Q 047286 498 VRGDIVFEHTVALVGENGNGKSTVISLAERFHNPEQV--------------------------------IYSW--I---I 540 (632)
Q Consensus 498 ~~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~~--------------------------------~~~~--~---~ 540 (632)
++-+|.-++.++|+||+|||||||+++|.|+++|++. .... . .
T Consensus 24 ~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~~~~~~ 103 (204)
T cd03250 24 INLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKA 103 (204)
T ss_pred eeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhccCcHHHHhccCCCcCHHHHHHHHHH
Confidence 3334555669999999999999999999999887430 0000 0 1
Q ss_pred HHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh-------------------------------------hc
Q 047286 541 IKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY-------------------------------------CG 583 (632)
Q Consensus 541 ~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~-------------------------------------~~ 583 (632)
..+.+++..+|.|+++.+.+.+.+||+|||||++||||+.. ++
T Consensus 104 ~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~ 183 (204)
T cd03250 104 CALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRIL 183 (204)
T ss_pred cCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEE
Confidence 13457888999999999999999999999999999999443 77
Q ss_pred cccchhhhhcCCEEEEEeCCe
Q 047286 584 CGSPPYHYKNADITSVVKNGV 604 (632)
Q Consensus 584 iahrl~~~~~aD~I~vl~~G~ 604 (632)
+||+++.++.||+|++|++|+
T Consensus 184 ~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 184 VTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred EeCCHHHHhhCCEEEEEeCCC
Confidence 899999998899999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.1e-17 Score=167.76 Aligned_cols=120 Identities=18% Similarity=0.208 Sum_probs=87.4
Q ss_pred CcccccEEEeeEEEEEecCCCChHHHHHhhhcCCChhh---------hc-------HHHH--------------------
Q 047286 496 STVRGDIVFEHTVALVGENGNGKSTVISLAERFHNPEQ---------VI-------YSWI-------------------- 539 (632)
Q Consensus 496 ~~~~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~~-------~~~~-------------------- 539 (632)
.+++.+|.-++++||+||+|||||||+++|.|++.|++ +. ....
T Consensus 23 ~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv 102 (288)
T PRK13643 23 FDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETV 102 (288)
T ss_pred eeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhcccchH
Confidence 34445666677999999999999999999999988743 10 0000
Q ss_pred HHH------------------HHHHHhcCCCccC-cccccCCCCCChHHHHHHHHHHHHhh-------------------
Q 047286 540 IIK------------------CTNFIASLPQGSD-LNVGERGLQLSGGLKQRIARTRARNY------------------- 581 (632)
Q Consensus 540 ~~~------------------~~~~i~~lp~g~d-t~vge~G~~LSgGQrQRiaiARA~~~------------------- 581 (632)
..+ +.+.+..+ |++ ........+||||||||++||||+..
T Consensus 103 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~--~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~ 180 (288)
T PRK13643 103 LKDVAFGPQNFGIPKEKAEKIAAEKLEMV--GLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKAR 180 (288)
T ss_pred HHHHHhHHHHcCCCHHHHHHHHHHHHHHc--CCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHH
Confidence 000 11112211 342 22355667899999999999999554
Q ss_pred -----------------hccccchhhh-hcCCEEEEEeCCeEeeecChHHHhcc
Q 047286 582 -----------------CGCGSPPYHY-KNADITSVVKNGVIAEKGRHDALMKI 617 (632)
Q Consensus 582 -----------------~~iahrl~~~-~~aD~I~vl~~G~ive~G~h~eL~~~ 617 (632)
+++||.+..+ +.||+|++|++|+|++.|+++++..+
T Consensus 181 ~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 234 (288)
T PRK13643 181 IEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQE 234 (288)
T ss_pred HHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 7889999977 56999999999999999999998763
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.5e-17 Score=166.05 Aligned_cols=118 Identities=20% Similarity=0.240 Sum_probs=86.0
Q ss_pred ccccEEEeeEEEEEecCCCChHHHHHhhhcCCChhh---------h---cHHHH-------------------HH-----
Q 047286 498 VRGDIVFEHTVALVGENGNGKSTVISLAERFHNPEQ---------V---IYSWI-------------------II----- 541 (632)
Q Consensus 498 ~~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~---~~~~~-------------------~~----- 541 (632)
+.-+|.-++++||+||+|||||||+++|.|+++|++ + ..... +.
T Consensus 28 isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~ 107 (269)
T PRK13648 28 VSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAF 107 (269)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHHHHHHh
Confidence 334555667999999999999999999999988743 0 00000 00
Q ss_pred --------------HHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh--------------------------
Q 047286 542 --------------KCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY-------------------------- 581 (632)
Q Consensus 542 --------------~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~-------------------------- 581 (632)
.+.+.+..+ |+.........+||||||||++||||++.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L 185 (269)
T PRK13648 108 GLENHAVPYDEMHRRVSEALKQV--DMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLV 185 (269)
T ss_pred hHHhcCCCHHHHHHHHHHHHHHc--CCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 001111111 23223344567899999999999999554
Q ss_pred -----------hccccchhhhhcCCEEEEEeCCeEeeecChHHHhcc
Q 047286 582 -----------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKI 617 (632)
Q Consensus 582 -----------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~ 617 (632)
+++||++..+..||+|++|++|+|++.|+++++...
T Consensus 186 ~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 186 RKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred HHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 688999998888999999999999999999999874
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=99.70 E-value=3e-17 Score=161.47 Aligned_cols=110 Identities=24% Similarity=0.265 Sum_probs=79.6
Q ss_pred ccccEEEeeEEEEEecCCCChHHHHHhhhcCCChhhh---------cH--HHH---------------------H-----
Q 047286 498 VRGDIVFEHTVALVGENGNGKSTVISLAERFHNPEQV---------IY--SWI---------------------I----- 540 (632)
Q Consensus 498 ~~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~~---------~~--~~~---------------------~----- 540 (632)
+.-+|.-++++||+||+|||||||+++|.|+++|++. .. ... +
T Consensus 19 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~ 98 (213)
T cd03259 19 LSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLK 98 (213)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHHhHHH
Confidence 3335555678999999999999999999999877430 00 000 0
Q ss_pred ----------HHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh-----------------------------
Q 047286 541 ----------IKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY----------------------------- 581 (632)
Q Consensus 541 ----------~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~----------------------------- 581 (632)
..+.+++..+ |++........+||||||||++||||+..
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~ 176 (213)
T cd03259 99 LRGVPKAEIRARVRELLELV--GLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKEL 176 (213)
T ss_pred HcCCCHHHHHHHHHHHHHHc--CChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 0122333333 45444555667899999999999999554
Q ss_pred --------hccccchhhhh-cCCEEEEEeCCeEeeec
Q 047286 582 --------CGCGSPPYHYK-NADITSVVKNGVIAEKG 609 (632)
Q Consensus 582 --------~~iahrl~~~~-~aD~I~vl~~G~ive~G 609 (632)
+++||+++.+. .||+|++|++|++++.|
T Consensus 177 ~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 177 QRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 68899998764 59999999999999876
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=4e-17 Score=166.97 Aligned_cols=118 Identities=21% Similarity=0.162 Sum_probs=86.6
Q ss_pred ccccEEEeeEEEEEecCCCChHHHHHhhhcCCChhhh---------c---HHHH--------------------HHHH--
Q 047286 498 VRGDIVFEHTVALVGENGNGKSTVISLAERFHNPEQV---------I---YSWI--------------------IIKC-- 543 (632)
Q Consensus 498 ~~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~~---------~---~~~~--------------------~~~~-- 543 (632)
+.-+|.-++++||+|++|||||||+++|.|+++|++. . .... ..++
T Consensus 26 v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~ 105 (277)
T PRK13642 26 VSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAF 105 (277)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHHHHHHh
Confidence 3345666679999999999999999999999887430 0 0000 0001
Q ss_pred ----------------HHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh--------------------------
Q 047286 544 ----------------TNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY-------------------------- 581 (632)
Q Consensus 544 ----------------~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~-------------------------- 581 (632)
.+.+..+ |++.........||||||||++||||+..
T Consensus 106 ~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l 183 (277)
T PRK13642 106 GMENQGIPREEMIKRVDEALLAV--NMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVI 183 (277)
T ss_pred hHHHcCCCHHHHHHHHHHHHHHC--CCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 0111111 33333444567899999999999999554
Q ss_pred -----------hccccchhhhhcCCEEEEEeCCeEeeecChHHHhcc
Q 047286 582 -----------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKI 617 (632)
Q Consensus 582 -----------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~ 617 (632)
+++||++..+..||+|++|++|++++.|+++++++.
T Consensus 184 ~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 184 HEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred HHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 788999999989999999999999999999999875
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=99.70 E-value=3e-17 Score=155.25 Aligned_cols=128 Identities=17% Similarity=0.139 Sum_probs=84.3
Q ss_pred EEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHHh---hcceEEEcccCcccccccccccccccCCCCCCHHHHHHH
Q 047286 87 LQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAE---QEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRPA 163 (632)
Q Consensus 87 ~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~~---r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 163 (632)
++++++||+++|+||||||||||+++|.|+...+..++ ...++|++|++. +.- .++.+-.
T Consensus 19 ~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~-----------LSg------Gq~qrv~ 81 (177)
T cd03222 19 LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYID-----------LSG------GELQRVA 81 (177)
T ss_pred CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCC-----------CCH------HHHHHHH
Confidence 37899999999999999999999999996533222111 124677777642 000 1110111
Q ss_pred HHHccchhhHhhCCcccccccccCCCCHHHHHHHHHHHHHHh-CC-ceEEEEecCchHHhh-cCeEEEEeCCeEEE
Q 047286 164 VQLANAEKSIDKLPLGLDTVVATNAVDAQSERIVQAAMVKLV-TN-QTVVIVANCLITIRN-ADCIIMVSKGKIVE 236 (632)
Q Consensus 164 ~~~~~l~~~i~~l~~g~~~~v~ts~LD~~~~~~i~~~l~~~~-~~-~tviiitH~~~~~~~-aD~i~vl~~G~i~~ 236 (632)
+..+ +..-|.=+-.-=+|++||+.+++.+.+.++++. ++ .|+|++||++..+.. ||++++|+++-.+.
T Consensus 82 lara-----l~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~ 152 (177)
T cd03222 82 IAAA-----LLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGVY 152 (177)
T ss_pred HHHH-----HhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCccc
Confidence 1111 111111000001489999999999999999875 33 899999999998875 99999999876553
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.8e-17 Score=165.74 Aligned_cols=128 Identities=23% Similarity=0.211 Sum_probs=87.6
Q ss_pred ccEEEeeEEEEEecCCCChHHHHHhhhcCCChhh---------hc---HH---HHHH---------------HHHHHHh-
Q 047286 500 GDIVFEHTVALVGENGNGKSTVISLAERFHNPEQ---------VI---YS---WIII---------------KCTNFIA- 548 (632)
Q Consensus 500 g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~~---~~---~~~~---------------~~~~~i~- 548 (632)
-+|.-++++||+||+|||||||+++|.|+++|++ +. .. .... .+.+.+.
T Consensus 28 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~ 107 (269)
T PRK11831 28 LTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAY 107 (269)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHH
Confidence 3455556999999999999999999999988743 10 00 0000 0001110
Q ss_pred ---c---CC--------------CccCcccccCCCCCChHHHHHHHHHHHHhh---------------------------
Q 047286 549 ---S---LP--------------QGSDLNVGERGLQLSGGLKQRIARTRARNY--------------------------- 581 (632)
Q Consensus 549 ---~---lp--------------~g~dt~vge~G~~LSgGQrQRiaiARA~~~--------------------------- 581 (632)
. ++ -|++........+||||||||++||||++.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~ 187 (269)
T PRK11831 108 PLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLIS 187 (269)
T ss_pred HHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHH
Confidence 0 00 022222233446899999999999999654
Q ss_pred ----------hccccchhhhh-cCCEEEEEeCCeEeeecChHHHhccCCchhHHHHH
Q 047286 582 ----------CGCGSPPYHYK-NADITSVVKNGVIAEKGRHDALMKITDGTYASLTA 627 (632)
Q Consensus 582 ----------~~iahrl~~~~-~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~~ 627 (632)
+++||.+..+. .||+|++|++|+|++.|+++++++.....++.++.
T Consensus 188 ~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 244 (269)
T PRK11831 188 ELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQANPDPRVRQFLD 244 (269)
T ss_pred HHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhcCCcHHHHHHHH
Confidence 68899998875 59999999999999999999998753344555554
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.3e-17 Score=166.46 Aligned_cols=120 Identities=20% Similarity=0.227 Sum_probs=89.2
Q ss_pred CcccccEEEeeEEEEEecCCCChHHHHHhhhcCCChhh---------h---c-HHHH-------------------H-H-
Q 047286 496 STVRGDIVFEHTVALVGENGNGKSTVISLAERFHNPEQ---------V---I-YSWI-------------------I-I- 541 (632)
Q Consensus 496 ~~~~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~---~-~~~~-------------------~-~- 541 (632)
.+++-+|.-++++||+||+|||||||+++|+|+++|++ + . .... + .
T Consensus 19 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~en 98 (274)
T PRK13644 19 ENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEED 98 (274)
T ss_pred eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccchHHHH
Confidence 34444666677999999999999999999999987743 0 0 0000 0 0
Q ss_pred -----------------HHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh-----------------------
Q 047286 542 -----------------KCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY----------------------- 581 (632)
Q Consensus 542 -----------------~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~----------------------- 581 (632)
.+.+.+..+ |++.........||||||||++||||+..
T Consensus 99 l~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~ 176 (274)
T PRK13644 99 LAFGPENLCLPPIEIRKRVDRALAEI--GLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVL 176 (274)
T ss_pred HHhhHHHcCCCHHHHHHHHHHHHHHC--CCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence 011122222 44444455678899999999999999554
Q ss_pred -------------hccccchhhhhcCCEEEEEeCCeEeeecChHHHhcc
Q 047286 582 -------------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKI 617 (632)
Q Consensus 582 -------------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~ 617 (632)
+++||.+..+..||+|++|++|++++.|+.+++...
T Consensus 177 ~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 177 ERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred HHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 788999999999999999999999999999998764
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=4e-17 Score=169.01 Aligned_cols=116 Identities=22% Similarity=0.289 Sum_probs=86.1
Q ss_pred ccccEEEeeEEEEEecCCCChHHHHHhhhcCCChhhh---------cH--HHH----------------------H----
Q 047286 498 VRGDIVFEHTVALVGENGNGKSTVISLAERFHNPEQV---------IY--SWI----------------------I---- 540 (632)
Q Consensus 498 ~~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~~---------~~--~~~----------------------~---- 540 (632)
++-+|+-++++||+||+|||||||+++|+|++.|++. .. ... +
T Consensus 26 vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~ 105 (306)
T PRK13537 26 LSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFG 105 (306)
T ss_pred ceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHH
Confidence 3335555678999999999999999999999887540 00 000 0
Q ss_pred -----------HHHHHHHh--cCCCccCcccccCCCCCChHHHHHHHHHHHHhh--------------------------
Q 047286 541 -----------IKCTNFIA--SLPQGSDLNVGERGLQLSGGLKQRIARTRARNY-------------------------- 581 (632)
Q Consensus 541 -----------~~~~~~i~--~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~-------------------------- 581 (632)
..+.+.+. .|++..++.++ +||||||||++||||++.
T Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l 181 (306)
T PRK13537 106 RYFGLSAAAARALVPPLLEFAKLENKADAKVG----ELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERL 181 (306)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCchHhcCchh----hCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHH
Confidence 01112222 24445555554 799999999999999654
Q ss_pred ----------hccccchhhhh-cCCEEEEEeCCeEeeecChHHHhcc
Q 047286 582 ----------CGCGSPPYHYK-NADITSVVKNGVIAEKGRHDALMKI 617 (632)
Q Consensus 582 ----------~~iahrl~~~~-~aD~I~vl~~G~ive~G~h~eL~~~ 617 (632)
+++||.++.+. .||+|++|++|+|++.|+.+++.+.
T Consensus 182 ~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 182 RSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred HHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 67799999885 5999999999999999999999764
|
|
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.1e-17 Score=166.25 Aligned_cols=149 Identities=17% Similarity=0.153 Sum_probs=106.5
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC------------------cH-------Hhh---cceEEEcccCcc
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA------------------PE-------AEQ---EKIGLVSKEPIF 137 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~------------------~~-------~~r---~~i~~v~Q~~~~ 137 (632)
+++ +++|++++|+||||||||||+++|+|+.... .. ..+ ..++|++|++..
T Consensus 20 i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~ 98 (255)
T cd03236 20 LPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKPQYVDL 98 (255)
T ss_pred CCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeeecchhcc
Confidence 664 8999999999999999999999998653210 00 011 136788887654
Q ss_pred cccccccccccccC-CCCCCHHHHHHHHHHccchh----hHhhCCccccccc-----------------ccCCCCHHHHH
Q 047286 138 LFCDFNEGQYIPYG-KQNASDEHIRPAVQLANAEK----SIDKLPLGLDTVV-----------------ATNAVDAQSER 195 (632)
Q Consensus 138 ~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~l~~----~i~~l~~g~~~~v-----------------~ts~LD~~~~~ 195 (632)
+..++.. ++... ......+++.++++..++.+ ....+|.|..+++ +|++||+.+++
T Consensus 99 ~~~~~~~--~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~ 176 (255)
T cd03236 99 IPKAVKG--KVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRL 176 (255)
T ss_pred CchHHHH--HHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHH
Confidence 4422222 22221 11112356777888887654 4567888988777 39999999999
Q ss_pred HHHHHHHHHhC-CceEEEEecCchHHhh-cCeEEEEeCCeEEEec
Q 047286 196 IVQAAMVKLVT-NQTVVIVANCLITIRN-ADCIIMVSKGKIVEKG 238 (632)
Q Consensus 196 ~i~~~l~~~~~-~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g 238 (632)
.+.+.++++.+ ++|+|++||+++.+.. ||+|++| +|++.+.|
T Consensus 177 ~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l-~~~~~~~~ 220 (255)
T cd03236 177 NAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCL-YGEPGAYG 220 (255)
T ss_pred HHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE-CCCCCcce
Confidence 99999998864 7899999999998875 9999999 46676544
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=7e-16 Score=176.94 Aligned_cols=160 Identities=15% Similarity=0.242 Sum_probs=113.9
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCC----------CC---cH--HhhcceEEEcccCcccccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRF----------YA---PE--AEQEKIGLVSKEPIFLFCDFNEGQYIP 149 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~----------~~---~~--~~r~~i~~v~Q~~~~~~~~~~~~~~i~ 149 (632)
+++.-+++|+.+.++||.|||||||++.+.|... |+ .. .-++.++|.+|+...+ +.++..+-+.
T Consensus 133 ~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~-p~lTVreTld 211 (1391)
T KOG0065|consen 133 DISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHF-PELTVRETLD 211 (1391)
T ss_pred CcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEecccccccc-ceeEEeehhh
Confidence 4888999999999999999999999999975321 00 00 1257799999987543 3333332333
Q ss_pred cCC---------CCCCHHH-----HHHHHHHccch---------hhHhhCCcccccccc-----------------cCCC
Q 047286 150 YGK---------QNASDEH-----IRPAVQLANAE---------KSIDKLPLGLDTVVA-----------------TNAV 189 (632)
Q Consensus 150 ~~~---------~~~~~~~-----~~~~~~~~~l~---------~~i~~l~~g~~~~v~-----------------ts~L 189 (632)
+.. ++.++++ .+.+++..|++ +.++..++|.+.+|. |.||
T Consensus 212 Fa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GL 291 (1391)
T KOG0065|consen 212 FAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGL 291 (1391)
T ss_pred HHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecccccc
Confidence 311 1122222 22455555553 456778889988873 7899
Q ss_pred CHHHHHHHHHHHHHHhC--CceEEEEecCc--hHHhhcCeEEEEeCCeEEEecChhHHhc
Q 047286 190 DAQSERIVQAAMVKLVT--NQTVVIVANCL--ITIRNADCIIMVSKGKIVEKGTHDELIE 245 (632)
Q Consensus 190 D~~~~~~i~~~l~~~~~--~~tviiitH~~--~~~~~aD~i~vl~~G~i~~~g~~~el~~ 245 (632)
|..+.-++.++|+++.+ +.|.++.-++. +.....|.|++|.+|+++.+|+.++.+.
T Consensus 292 DSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~ 351 (1391)
T KOG0065|consen 292 DSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLP 351 (1391)
T ss_pred cHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHH
Confidence 99999999999999854 56777776765 3456699999999999999999998753
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.5e-17 Score=162.02 Aligned_cols=115 Identities=23% Similarity=0.265 Sum_probs=85.1
Q ss_pred cEEEeeEEEEEecCCCChHHHHHhhhcCCChhhh------------cHHHH--------------------H--------
Q 047286 501 DIVFEHTVALVGENGNGKSTVISLAERFHNPEQV------------IYSWI--------------------I-------- 540 (632)
Q Consensus 501 ~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~~------------~~~~~--------------------~-------- 540 (632)
+|.-++++||+||+|||||||+++|.|+++|++- +.... +
T Consensus 21 ~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~ 100 (235)
T cd03299 21 EVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKRK 100 (235)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHHHHHHHcC
Confidence 4445569999999999999999999999887430 00000 0
Q ss_pred -------HHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh--------------------------------
Q 047286 541 -------IKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY-------------------------------- 581 (632)
Q Consensus 541 -------~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~-------------------------------- 581 (632)
..+.+.+..+ |+.-.+.....+||||||||++||||+..
T Consensus 101 ~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~ 178 (235)
T cd03299 101 VDKKEIERKVLEIAEML--GIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKE 178 (235)
T ss_pred CCHHHHHHHHHHHHHHc--CChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHh
Confidence 0111222222 34333455567899999999999999554
Q ss_pred -----hccccchhhhh-cCCEEEEEeCCeEeeecChHHHhcc
Q 047286 582 -----CGCGSPPYHYK-NADITSVVKNGVIAEKGRHDALMKI 617 (632)
Q Consensus 582 -----~~iahrl~~~~-~aD~I~vl~~G~ive~G~h~eL~~~ 617 (632)
+++||++..+. .||+|++|++|++++.|+++++++.
T Consensus 179 ~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 220 (235)
T cd03299 179 FGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220 (235)
T ss_pred cCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 67899999876 5999999999999999999999875
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.6e-17 Score=166.79 Aligned_cols=118 Identities=21% Similarity=0.172 Sum_probs=87.3
Q ss_pred ccccEEEeeEEEEEecCCCChHHHHHhhhcCCChhh---------hcH----HHH-------------------HH-H--
Q 047286 498 VRGDIVFEHTVALVGENGNGKSTVISLAERFHNPEQ---------VIY----SWI-------------------II-K-- 542 (632)
Q Consensus 498 ~~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~~~----~~~-------------------~~-~-- 542 (632)
+.-+|.-++++||+|++|||||||+++|.|++.|++ +.. ... +. +
T Consensus 29 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~ 108 (280)
T PRK13633 29 VNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVA 108 (280)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhccccHHHHHH
Confidence 334555567999999999999999999999988743 100 000 00 0
Q ss_pred ----------------HHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh-------------------------
Q 047286 543 ----------------CTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY------------------------- 581 (632)
Q Consensus 543 ----------------~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~------------------------- 581 (632)
+.+.+.. -|+.........+||||||||++||||+..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~l~~--~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~ 186 (280)
T PRK13633 109 FGPENLGIPPEEIRERVDESLKK--VGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNT 186 (280)
T ss_pred hhHhhcCCCHHHHHHHHHHHHHH--CCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 0011111 144444455667999999999999999554
Q ss_pred ------------hccccchhhhhcCCEEEEEeCCeEeeecChHHHhcc
Q 047286 582 ------------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKI 617 (632)
Q Consensus 582 ------------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~ 617 (632)
+++||+++.+..||+|++|++|+|++.|+++++.+.
T Consensus 187 l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 234 (280)
T PRK13633 187 IKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIFKE 234 (280)
T ss_pred HHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 678999999988999999999999999999999864
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.3e-17 Score=163.28 Aligned_cols=128 Identities=22% Similarity=0.261 Sum_probs=90.6
Q ss_pred ccccEEEeeEEEEEecCCCChHHHHHhhhcCCChhhh---------c-----------HHHH------------------
Q 047286 498 VRGDIVFEHTVALVGENGNGKSTVISLAERFHNPEQV---------I-----------YSWI------------------ 539 (632)
Q Consensus 498 ~~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~~---------~-----------~~~~------------------ 539 (632)
+.-+|.-++++||+||+|||||||+++|.|++.|++. . ....
T Consensus 22 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 101 (250)
T PRK11264 22 IDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRT 101 (250)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcccCCCCC
Confidence 3345566679999999999999999999999876431 0 0000
Q ss_pred -HHH-------------------HHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh------------------
Q 047286 540 -IIK-------------------CTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY------------------ 581 (632)
Q Consensus 540 -~~~-------------------~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~------------------ 581 (632)
..+ +.+.+..+ |++........+||||||||++||||+..
T Consensus 102 v~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~ 179 (250)
T PRK11264 102 VLENIIEGPVIVKGEPKEEATARARELLAKV--GLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPEL 179 (250)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc--CCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH
Confidence 000 11122222 44444455678899999999999999654
Q ss_pred ------------------hccccchhhhh-cCCEEEEEeCCeEeeecChHHHhccCC-chhHHHHH
Q 047286 582 ------------------CGCGSPPYHYK-NADITSVVKNGVIAEKGRHDALMKITD-GTYASLTA 627 (632)
Q Consensus 582 ------------------~~iahrl~~~~-~aD~I~vl~~G~ive~G~h~eL~~~~~-g~y~~l~~ 627 (632)
+++||++..+. .||+|++|++|++++.|+++++.+.+. ...+.++.
T Consensus 180 ~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~ 245 (250)
T PRK11264 180 VGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFADPQQPRTRQFLE 245 (250)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcCCCCHHHHHHHH
Confidence 68899999885 599999999999999999999976422 23344444
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=99.70 E-value=4e-17 Score=169.16 Aligned_cols=116 Identities=24% Similarity=0.277 Sum_probs=84.1
Q ss_pred ccccEEEeeEEEEEecCCCChHHHHHhhhcCCChhhh---------c--HHHH----------------------HH---
Q 047286 498 VRGDIVFEHTVALVGENGNGKSTVISLAERFHNPEQV---------I--YSWI----------------------II--- 541 (632)
Q Consensus 498 ~~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~~---------~--~~~~----------------------~~--- 541 (632)
+.-+|.-++++||+||+|||||||+++|.|++.|++. . .... +.
T Consensus 23 vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~ 102 (303)
T TIGR01288 23 LSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFG 102 (303)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHH
Confidence 3345566679999999999999999999999877430 0 0000 00
Q ss_pred ------------HHHHHHh--cCCCccCcccccCCCCCChHHHHHHHHHHHHhh--------------------------
Q 047286 542 ------------KCTNFIA--SLPQGSDLNVGERGLQLSGGLKQRIARTRARNY-------------------------- 581 (632)
Q Consensus 542 ------------~~~~~i~--~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~-------------------------- 581 (632)
.+.+.+. .+++.+++ ...+||||||||++||||+..
T Consensus 103 ~~~~~~~~~~~~~~~~ll~~~~l~~~~~~----~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l 178 (303)
T TIGR01288 103 RYFGMSTREIEAVIPSLLEFARLESKADV----RVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERL 178 (303)
T ss_pred HHcCCCHHHHHHHHHHHHHHCCChhHhcC----chhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHH
Confidence 0111111 22233333 345799999999999999654
Q ss_pred ----------hccccchhhhh-cCCEEEEEeCCeEeeecChHHHhcc
Q 047286 582 ----------CGCGSPPYHYK-NADITSVVKNGVIAEKGRHDALMKI 617 (632)
Q Consensus 582 ----------~~iahrl~~~~-~aD~I~vl~~G~ive~G~h~eL~~~ 617 (632)
+++||.++.+. .||+|++|++|++++.|+++++.+.
T Consensus 179 ~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 179 RSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred HHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 78899999885 5999999999999999999999764
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.1e-17 Score=159.00 Aligned_cols=140 Identities=11% Similarity=0.170 Sum_probs=104.7
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcH----------H-hhcceEEEcccCccc-ccccccccccccCCC
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPE----------A-EQEKIGLVSKEPIFL-FCDFNEGQYIPYGKQ 153 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~----------~-~r~~i~~v~Q~~~~~-~~~~~~~~~i~~~~~ 153 (632)
+||++++||+++|+||||||||||+++|+|....... . .++.++|++|++.++ ..++.+ |+.+...
T Consensus 19 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~--~l~~~~~ 96 (195)
T PRK13541 19 LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFE--NLKFWSE 96 (195)
T ss_pred EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCcCCCccCCHHH--HHHHHHH
Confidence 8999999999999999999999999999865321110 0 134589999987543 345554 5654321
Q ss_pred C-CCHHHHHHHHHHccchh----hHhhCCccccccc-----------------ccCCCCHHHHHHHHHHHHHH-hCCceE
Q 047286 154 N-ASDEHIRPAVQLANAEK----SIDKLPLGLDTVV-----------------ATNAVDAQSERIVQAAMVKL-VTNQTV 210 (632)
Q Consensus 154 ~-~~~~~~~~~~~~~~l~~----~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l~~~-~~~~tv 210 (632)
. ...+++.++++.+++.+ ....+|.|..+++ +|++||+.+++.+.+.+++. .++.|+
T Consensus 97 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~ti 176 (195)
T PRK13541 97 IYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIV 176 (195)
T ss_pred hcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEE
Confidence 1 13456677777777654 4667889988777 38999999999999999765 357899
Q ss_pred EEEecCchHHhhcCeEE
Q 047286 211 VIVANCLITIRNADCII 227 (632)
Q Consensus 211 iiitH~~~~~~~aD~i~ 227 (632)
|++||+...++.||.+.
T Consensus 177 ii~sh~~~~i~~~~~~~ 193 (195)
T PRK13541 177 LLSSHLESSIKSAQILQ 193 (195)
T ss_pred EEEeCCccccchhheec
Confidence 99999999999888763
|
|
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.9e-17 Score=152.46 Aligned_cols=155 Identities=19% Similarity=0.264 Sum_probs=110.5
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC---------------cHHhhcceEEEcccCccc-ccccccccccc
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA---------------PEAEQEKIGLVSKEPIFL-FCDFNEGQYIP 149 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~---------------~~~~r~~i~~v~Q~~~~~-~~~~~~~~~i~ 149 (632)
++++|++|+++.|+|.||||||||++.|.|....+ .......++-|+|+|..- .+.++..+|+.
T Consensus 25 ~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lTieENl~ 104 (263)
T COG1101 25 LSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLA 104 (263)
T ss_pred CceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccccHHHHHH
Confidence 99999999999999999999999999998542221 111234588899999531 12333334654
Q ss_pred cCCCC------------CCHHHHHHHHHHcc------chhhHhhCCcccccccc-----------------cCCCCHHHH
Q 047286 150 YGKQN------------ASDEHIRPAVQLAN------AEKSIDKLPLGLDTVVA-----------------TNAVDAQSE 194 (632)
Q Consensus 150 ~~~~~------------~~~~~~~~~~~~~~------l~~~i~~l~~g~~~~v~-----------------ts~LD~~~~ 194 (632)
+.... ...+..++.+...+ +++.+..||+|+++.+. |++|||++.
T Consensus 105 la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta 184 (263)
T COG1101 105 LAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTA 184 (263)
T ss_pred HHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchH
Confidence 32110 11122333344332 45667889999887663 899999999
Q ss_pred HHHHHHHHHHhC--CceEEEEecCchHH-hhcCeEEEEeCCeEEEecCh
Q 047286 195 RIVQAAMVKLVT--NQTVVIVANCLITI-RNADCIIMVSKGKIVEKGTH 240 (632)
Q Consensus 195 ~~i~~~l~~~~~--~~tviiitH~~~~~-~~aD~i~vl~~G~i~~~g~~ 240 (632)
..+++.-.++.+ +-|.+||||+++.+ .+.+|.++|++|+|+.+-+-
T Consensus 185 ~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv~g 233 (263)
T COG1101 185 EFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDVTG 233 (263)
T ss_pred HHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEccc
Confidence 999998888743 56999999999765 66999999999999976443
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.7e-17 Score=153.52 Aligned_cols=126 Identities=23% Similarity=0.310 Sum_probs=89.7
Q ss_pred cEEEeeEEEEEecCCCChHHHHHhhhcCCChhh------------hcHHHH--HH--------------------HHH--
Q 047286 501 DIVFEHTVALVGENGNGKSTVISLAERFHNPEQ------------VIYSWI--II--------------------KCT-- 544 (632)
Q Consensus 501 ~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~------------~~~~~~--~~--------------------~~~-- 544 (632)
+|.-++.+||+||||||||||++++.|+..|++ +....+ +. |..
T Consensus 30 ~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafp 109 (263)
T COG1127 30 DVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFP 109 (263)
T ss_pred eecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhhee
Confidence 455556789999999999999999999999865 111100 00 000
Q ss_pred --HHHhcCC--------------CccCcccc-cCCCCCChHHHHHHHHHHHHhh--------------------------
Q 047286 545 --NFIASLP--------------QGSDLNVG-ERGLQLSGGLKQRIARTRARNY-------------------------- 581 (632)
Q Consensus 545 --~~i~~lp--------------~g~dt~vg-e~G~~LSgGQrQRiaiARA~~~-------------------------- 581 (632)
+. ..|| -|+...+. --.+.||||.|.|.|||||+-.
T Consensus 110 lre~-~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI 188 (263)
T COG1127 110 LREH-TKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELI 188 (263)
T ss_pred hHhh-ccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHH
Confidence 00 0111 13433322 2346899999999999999422
Q ss_pred -----------hccccchhhhhc-CCEEEEEeCCeEeeecChHHHhccCCchhHHHHH
Q 047286 582 -----------CGCGSPPYHYKN-ADITSVVKNGVIAEKGRHDALMKITDGTYASLTA 627 (632)
Q Consensus 582 -----------~~iahrl~~~~~-aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~~ 627 (632)
+++||.++++.. ||+|+++.||+|+-+||.+||.+..+.+-+++++
T Consensus 189 ~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~sd~P~v~qf~~ 246 (263)
T COG1127 189 RELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLASDDPWVRQFFN 246 (263)
T ss_pred HHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHhCCCHHHHHHhc
Confidence 799999988864 7999999999999999999999975555666654
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.7e-17 Score=163.45 Aligned_cols=125 Identities=23% Similarity=0.263 Sum_probs=86.4
Q ss_pred ccccEEEeeEEEEEecCCCChHHHHHhhhcCCChh-----h---------hc-----HHHH-----------------HH
Q 047286 498 VRGDIVFEHTVALVGENGNGKSTVISLAERFHNPE-----Q---------VI-----YSWI-----------------II 541 (632)
Q Consensus 498 ~~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~-----~---------~~-----~~~~-----------------~~ 541 (632)
+.-+|.-++++||+|+||||||||+++|.|+++|+ + +. .... +.
T Consensus 26 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~ 105 (254)
T PRK14273 26 INIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFLMSIY 105 (254)
T ss_pred eeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeeccccccCcHH
Confidence 34456666799999999999999999999999862 1 10 0000 00
Q ss_pred -HH---------------HHHHh----c--CCCccCcccccCCCCCChHHHHHHHHHHHHhh------------------
Q 047286 542 -KC---------------TNFIA----S--LPQGSDLNVGERGLQLSGGLKQRIARTRARNY------------------ 581 (632)
Q Consensus 542 -~~---------------~~~i~----~--lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~------------------ 581 (632)
++ .+.+. . +..++.........+||||||||++||||++.
T Consensus 106 eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~ 185 (254)
T PRK14273 106 DNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPIS 185 (254)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHH
Confidence 00 00111 0 10011112234567899999999999999654
Q ss_pred -----------------hccccchhhhh-cCCEEEEEeCCeEeeecChHHHhccCCchh
Q 047286 582 -----------------CGCGSPPYHYK-NADITSVVKNGVIAEKGRHDALMKITDGTY 622 (632)
Q Consensus 582 -----------------~~iahrl~~~~-~aD~I~vl~~G~ive~G~h~eL~~~~~g~y 622 (632)
++++|+++.+. .||+|++|++|+|++.|+++++.+.++-.|
T Consensus 186 ~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~ 244 (254)
T PRK14273 186 TGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELFFNPKNTK 244 (254)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCChH
Confidence 67899999875 599999999999999999999986533333
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=6e-17 Score=159.33 Aligned_cols=125 Identities=20% Similarity=0.296 Sum_probs=91.2
Q ss_pred cEEEeeEEEEEecCCCChHHHHHhhhcCCChhh------------hcHHHH-----------------------------
Q 047286 501 DIVFEHTVALVGENGNGKSTVISLAERFHNPEQ------------VIYSWI----------------------------- 539 (632)
Q Consensus 501 ~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~------------~~~~~~----------------------------- 539 (632)
+|.-++...|.|-||||||||++++.|+++|+. ++...+
T Consensus 50 ~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~f 129 (386)
T COG4175 50 DVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAF 129 (386)
T ss_pred eecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhc
Confidence 455555679999999999999999999999964 111111
Q ss_pred ------------HHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh--------------------------
Q 047286 540 ------------IIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY-------------------------- 581 (632)
Q Consensus 540 ------------~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~-------------------------- 581 (632)
...+.++++.. |++-.-.....+||||++||+.||||+-.
T Consensus 130 GLev~Gv~~~er~~~a~~~l~~V--gL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeL 207 (386)
T COG4175 130 GLEVQGVPKAEREERALEALELV--GLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDEL 207 (386)
T ss_pred ceeecCCCHHHHHHHHHHHHHHc--CchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHH
Confidence 01222333321 44444445567899999999999999322
Q ss_pred -----------hccccchh-hhhcCCEEEEEeCCeEeeecChHHHhccCCchh-HHHHH
Q 047286 582 -----------CGCGSPPY-HYKNADITSVVKNGVIAEKGRHDALMKITDGTY-ASLTA 627 (632)
Q Consensus 582 -----------~~iahrl~-~~~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y-~~l~~ 627 (632)
+.|||.|. .+|-.|||..|+||+||+.||++|.+.++-.-| +++++
T Consensus 208 l~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ~Gtp~eIl~~PAndYV~~Fv~ 266 (386)
T COG4175 208 LELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLNPANDYVRDFVR 266 (386)
T ss_pred HHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeEEEeCCHHHHHcCccHHHHHHHHh
Confidence 78999986 568999999999999999999999998754444 44443
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.9e-17 Score=163.59 Aligned_cols=117 Identities=23% Similarity=0.189 Sum_probs=84.6
Q ss_pred cccEEEeeEEEEEecCCCChHHHHHhhhcCCChhhh------------cHHH--H---------------------HH--
Q 047286 499 RGDIVFEHTVALVGENGNGKSTVISLAERFHNPEQV------------IYSW--I---------------------II-- 541 (632)
Q Consensus 499 ~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~~------------~~~~--~---------------------~~-- 541 (632)
.-+|.-++++||+||+|||||||+++|.|+++|++. .... . +.
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~ 99 (230)
T TIGR03410 20 SLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTG 99 (230)
T ss_pred eeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHH
Confidence 334555568999999999999999999999887430 0000 0 00
Q ss_pred ---------HHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh-------------------------------
Q 047286 542 ---------KCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY------------------------------- 581 (632)
Q Consensus 542 ---------~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~------------------------------- 581 (632)
...+.+....++++........+||||||||++||||+..
T Consensus 100 ~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~ 179 (230)
T TIGR03410 100 LAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRA 179 (230)
T ss_pred HHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH
Confidence 0111112222233334455667899999999999999554
Q ss_pred ------hccccchhhhhc-CCEEEEEeCCeEeeecChHHHh
Q 047286 582 ------CGCGSPPYHYKN-ADITSVVKNGVIAEKGRHDALM 615 (632)
Q Consensus 582 ------~~iahrl~~~~~-aD~I~vl~~G~ive~G~h~eL~ 615 (632)
+++||.+..+.. ||+|+++++|++++.|+++++.
T Consensus 180 ~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~~ 220 (230)
T TIGR03410 180 EGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELD 220 (230)
T ss_pred cCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHcC
Confidence 688999998874 9999999999999999999984
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.5e-17 Score=163.81 Aligned_cols=115 Identities=21% Similarity=0.361 Sum_probs=86.1
Q ss_pred cEEEeeEEEEEecCCCChHHHHHhhhcCCChhh---------hc----------------HHHH----------------
Q 047286 501 DIVFEHTVALVGENGNGKSTVISLAERFHNPEQ---------VI----------------YSWI---------------- 539 (632)
Q Consensus 501 ~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~~----------------~~~~---------------- 539 (632)
+|.-++++||+|+||||||||+++|.|+++|++ +. ....
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 106 (257)
T PRK10619 27 QANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSH 106 (257)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEEEecCcccCCC
Confidence 455556999999999999999999999987743 10 0000
Q ss_pred ---HHH-------------------HHHHHhcCCCccCccc-ccCCCCCChHHHHHHHHHHHHhh---------------
Q 047286 540 ---IIK-------------------CTNFIASLPQGSDLNV-GERGLQLSGGLKQRIARTRARNY--------------- 581 (632)
Q Consensus 540 ---~~~-------------------~~~~i~~lp~g~dt~v-ge~G~~LSgGQrQRiaiARA~~~--------------- 581 (632)
..+ +.+++..+ |+.... ......||||||||++||||++.
T Consensus 107 ~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 184 (257)
T PRK10619 107 MTVLENVMEAPIQVLGLSKQEARERAVKYLAKV--GIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALD 184 (257)
T ss_pred CcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc--CCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 001 11222222 444433 55677999999999999999654
Q ss_pred ---------------------hccccchhhhhc-CCEEEEEeCCeEeeecChHHHhcc
Q 047286 582 ---------------------CGCGSPPYHYKN-ADITSVVKNGVIAEKGRHDALMKI 617 (632)
Q Consensus 582 ---------------------~~iahrl~~~~~-aD~I~vl~~G~ive~G~h~eL~~~ 617 (632)
+++||+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 185 ~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 242 (257)
T PRK10619 185 PELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGN 242 (257)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhhhC
Confidence 788999999885 999999999999999999999864
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.7e-17 Score=166.31 Aligned_cols=117 Identities=20% Similarity=0.147 Sum_probs=86.2
Q ss_pred cccEEEeeEEEEEecCCCChHHHHHhhhcCCChhh---------hc-----HHHH--------------------HHH--
Q 047286 499 RGDIVFEHTVALVGENGNGKSTVISLAERFHNPEQ---------VI-----YSWI--------------------IIK-- 542 (632)
Q Consensus 499 ~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~~-----~~~~--------------------~~~-- 542 (632)
.-+|.-++++||+||+|||||||+++|+|+++|++ +. .... ..+
T Consensus 26 s~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~ 105 (283)
T PRK13636 26 NINIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVS 105 (283)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccHHHHHH
Confidence 33555567999999999999999999999987743 10 0000 000
Q ss_pred ----------------HHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh-------------------------
Q 047286 543 ----------------CTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY------------------------- 581 (632)
Q Consensus 543 ----------------~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~------------------------- 581 (632)
+.+.+..+ |++........+||||||||++||||++.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~l~~~--gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~ 183 (283)
T PRK13636 106 FGAVNLKLPEDEVRKRVDNALKRT--GIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKL 183 (283)
T ss_pred hHHHHcCCCHHHHHHHHHHHHHHC--CChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHH
Confidence 01111111 34334445678999999999999999654
Q ss_pred ------------hccccchhhhh-cCCEEEEEeCCeEeeecChHHHhcc
Q 047286 582 ------------CGCGSPPYHYK-NADITSVVKNGVIAEKGRHDALMKI 617 (632)
Q Consensus 582 ------------~~iahrl~~~~-~aD~I~vl~~G~ive~G~h~eL~~~ 617 (632)
+++||.++.+. .||+|++|++|++++.|+++++++.
T Consensus 184 l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 232 (283)
T PRK13636 184 LVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 232 (283)
T ss_pred HHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 67899999986 6999999999999999999999874
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.7e-17 Score=163.28 Aligned_cols=118 Identities=17% Similarity=0.193 Sum_probs=87.4
Q ss_pred ccccEEEeeEEEEEecCCCChHHHHHhhhcCCChhhh------------cHHH-H------------------H------
Q 047286 498 VRGDIVFEHTVALVGENGNGKSTVISLAERFHNPEQV------------IYSW-I------------------I------ 540 (632)
Q Consensus 498 ~~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~~------------~~~~-~------------------~------ 540 (632)
.+-+|.-++++||+||+|||||||+++|.|++.|++. .... . +
T Consensus 22 ~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~ 101 (241)
T PRK10895 22 VSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMA 101 (241)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhh
Confidence 3345666679999999999999999999999877430 0000 0 0
Q ss_pred --------------HHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh-------------------------
Q 047286 541 --------------IKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY------------------------- 581 (632)
Q Consensus 541 --------------~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~------------------------- 581 (632)
..+.+++..+ |++.........||||||||++||||+..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~ 179 (241)
T PRK10895 102 VLQIRDDLSAEQREDRANELMEEF--HIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRI 179 (241)
T ss_pred hhhcccccCHHHHHHHHHHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 0122233333 45444556677899999999999999654
Q ss_pred -----------hccccchhhh-hcCCEEEEEeCCeEeeecChHHHhcc
Q 047286 582 -----------CGCGSPPYHY-KNADITSVVKNGVIAEKGRHDALMKI 617 (632)
Q Consensus 582 -----------~~iahrl~~~-~~aD~I~vl~~G~ive~G~h~eL~~~ 617 (632)
+++||++..+ +.||+|++|++|++++.|++++++..
T Consensus 180 l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (241)
T PRK10895 180 IEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQD 227 (241)
T ss_pred HHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhcC
Confidence 6889999766 56999999999999999999999863
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.3e-17 Score=162.45 Aligned_cols=116 Identities=22% Similarity=0.248 Sum_probs=86.6
Q ss_pred ccEEEeeEEEEEecCCCChHHHHHhhhcCCChhh---------hc---------HHHH-------------------HHH
Q 047286 500 GDIVFEHTVALVGENGNGKSTVISLAERFHNPEQ---------VI---------YSWI-------------------IIK 542 (632)
Q Consensus 500 g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~~---------~~~~-------------------~~~ 542 (632)
-+|.-++++||+||||||||||+++|.|+++|++ +. .... ..+
T Consensus 23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~ 102 (242)
T PRK11124 23 LDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQN 102 (242)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCccccCCCcHHHH
Confidence 3455567999999999999999999999987743 10 0000 001
Q ss_pred -------------------HHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh----------------------
Q 047286 543 -------------------CTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY---------------------- 581 (632)
Q Consensus 543 -------------------~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~---------------------- 581 (632)
+.+++..+ |++........+||||||||++||||+..
T Consensus 103 i~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l 180 (242)
T PRK11124 103 LIEAPCRVLGLSKDQALARAEKLLERL--RLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQI 180 (242)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHH
Confidence 11122222 55555566678999999999999999654
Q ss_pred --------------hccccchhhhh-cCCEEEEEeCCeEeeecChHHHhcc
Q 047286 582 --------------CGCGSPPYHYK-NADITSVVKNGVIAEKGRHDALMKI 617 (632)
Q Consensus 582 --------------~~iahrl~~~~-~aD~I~vl~~G~ive~G~h~eL~~~ 617 (632)
+++||++..+. .||+|++|++|++++.|+++++.+.
T Consensus 181 ~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 231 (242)
T PRK11124 181 VSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTQP 231 (242)
T ss_pred HHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhcCc
Confidence 68899999985 5999999999999999999998754
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.4e-17 Score=165.87 Aligned_cols=119 Identities=24% Similarity=0.253 Sum_probs=87.8
Q ss_pred cccccEEEeeEEEEEecCCCChHHHHHhhhcCCChhh-----h-------c---HHHH-------------------H-H
Q 047286 497 TVRGDIVFEHTVALVGENGNGKSTVISLAERFHNPEQ-----V-------I---YSWI-------------------I-I 541 (632)
Q Consensus 497 ~~~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~-----~-------~---~~~~-------------------~-~ 541 (632)
++.-+|.-++++||+||+|||||||+++|+|+++|++ + . .... + .
T Consensus 25 ~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e 104 (282)
T PRK13640 25 DISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGD 104 (282)
T ss_pred eEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccCCHHH
Confidence 3444566667999999999999999999999998752 0 0 0000 0 0
Q ss_pred H------------------HHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh----------------------
Q 047286 542 K------------------CTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY---------------------- 581 (632)
Q Consensus 542 ~------------------~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~---------------------- 581 (632)
+ +.+.+..+ |++........+||||||||++||||+..
T Consensus 105 nl~~~~~~~~~~~~~~~~~~~~~l~~~--~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l 182 (282)
T PRK13640 105 DVAFGLENRAVPRPEMIKIVRDVLADV--GMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQI 182 (282)
T ss_pred HHHhhHHhCCCCHHHHHHHHHHHHHHC--CChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHH
Confidence 0 11112211 34344455667999999999999999544
Q ss_pred ---------------hccccchhhhhcCCEEEEEeCCeEeeecChHHHhcc
Q 047286 582 ---------------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKI 617 (632)
Q Consensus 582 ---------------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~ 617 (632)
+++||.++.+..||+|++|++|++++.|+++++++.
T Consensus 183 ~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 233 (282)
T PRK13640 183 LKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFSK 233 (282)
T ss_pred HHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 678999999999999999999999999999998763
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.8e-17 Score=157.52 Aligned_cols=141 Identities=12% Similarity=0.165 Sum_probs=103.1
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC--------------cHHhhcceEEEcccCcccc-cccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA--------------PEAEQEKIGLVSKEPIFLF-CDFNEGQYIP 149 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~--------------~~~~r~~i~~v~Q~~~~~~-~~~~~~~~i~ 149 (632)
.+||++++|++++|+||||||||||+++|.|..... ....++.++|++|++.++. .++.+ |+.
T Consensus 18 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~--~l~ 95 (198)
T TIGR01189 18 GLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALE--NLH 95 (198)
T ss_pred eeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEeccCcccccCCcHHH--HHH
Confidence 399999999999999999999999999998653211 1123467999999987654 34444 554
Q ss_pred cCCC--CCCHHHHHHHHHHccchh----hHhhCCccccccc-----------------ccCCCCHHHHHHHHHHHHHHh-
Q 047286 150 YGKQ--NASDEHIRPAVQLANAEK----SIDKLPLGLDTVV-----------------ATNAVDAQSERIVQAAMVKLV- 205 (632)
Q Consensus 150 ~~~~--~~~~~~~~~~~~~~~l~~----~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l~~~~- 205 (632)
+... ....+++.++++..++.+ .+..||+|..+++ +|++||+.+++.+.+.|.++.
T Consensus 96 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 175 (198)
T TIGR01189 96 FWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLA 175 (198)
T ss_pred HHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh
Confidence 3211 112345777888877754 4567888988777 399999999999999999874
Q ss_pred CCceEEEEecCchHHhhcCeEEE
Q 047286 206 TNQTVVIVANCLITIRNADCIIM 228 (632)
Q Consensus 206 ~~~tviiitH~~~~~~~aD~i~v 228 (632)
++.|+|++||+...+ .|++++.
T Consensus 176 ~~~tii~~sH~~~~~-~~~~~~~ 197 (198)
T TIGR01189 176 RGGIVLLTTHQDLGL-VEARELR 197 (198)
T ss_pred CCCEEEEEEcccccc-cceEEee
Confidence 578999999988533 2466543
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.8e-17 Score=165.47 Aligned_cols=117 Identities=22% Similarity=0.189 Sum_probs=82.8
Q ss_pred cccccEEEeeEEEEEecCCCChHHHHHhhhcCCChhh---------hc---HHHH--------------------HHHH-
Q 047286 497 TVRGDIVFEHTVALVGENGNGKSTVISLAERFHNPEQ---------VI---YSWI--------------------IIKC- 543 (632)
Q Consensus 497 ~~~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~~---~~~~--------------------~~~~- 543 (632)
+++-+|+-++++||+||||||||||+++|.|+++|++ +. .... ..++
T Consensus 23 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~ 102 (274)
T PRK13647 23 GLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVA 102 (274)
T ss_pred eEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHHHHHH
Confidence 3444566667999999999999999999999988743 00 0000 0000
Q ss_pred -----------------HHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh-------------------------
Q 047286 544 -----------------TNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY------------------------- 581 (632)
Q Consensus 544 -----------------~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~------------------------- 581 (632)
.+.+..+ |+.-........||||||||++||||+..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~~--~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~ 180 (274)
T PRK13647 103 FGPVNMGLDKDEVERRVEEALKAV--RMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEI 180 (274)
T ss_pred hhHHHcCCCHHHHHHHHHHHHHHC--CCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHH
Confidence 1111111 22222333456899999999999999554
Q ss_pred -----------hccccchhhh-hcCCEEEEEeCCeEeeecChHHHh
Q 047286 582 -----------CGCGSPPYHY-KNADITSVVKNGVIAEKGRHDALM 615 (632)
Q Consensus 582 -----------~~iahrl~~~-~~aD~I~vl~~G~ive~G~h~eL~ 615 (632)
+++||+++.+ +.||+|++|++|+|++.|+.+++.
T Consensus 181 l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 226 (274)
T PRK13647 181 LDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLT 226 (274)
T ss_pred HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHhc
Confidence 7889999988 569999999999999999987654
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.4e-17 Score=165.02 Aligned_cols=119 Identities=23% Similarity=0.270 Sum_probs=87.8
Q ss_pred cccccEEEeeEEEEEecCCCChHHHHHhhhcCCChhh---------h---cHHHH--------------------HHH--
Q 047286 497 TVRGDIVFEHTVALVGENGNGKSTVISLAERFHNPEQ---------V---IYSWI--------------------IIK-- 542 (632)
Q Consensus 497 ~~~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~---~~~~~--------------------~~~-- 542 (632)
++..+|.-++.+||+||+|||||||+++|.|+++|++ + ..... ..+
T Consensus 27 ~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~ 106 (271)
T PRK13632 27 NVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIA 106 (271)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHH
Confidence 3334555567999999999999999999999987743 0 00000 000
Q ss_pred ----------------HHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh-------------------------
Q 047286 543 ----------------CTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY------------------------- 581 (632)
Q Consensus 543 ----------------~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~------------------------- 581 (632)
+.+.+..+ |++........+||||||||++||||+..
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~ 184 (271)
T PRK13632 107 FGLENKKVPPKKMKDIIDDLAKKV--GMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKI 184 (271)
T ss_pred hHHHHcCCCHHHHHHHHHHHHHHc--CCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 11112222 44444556678999999999999999554
Q ss_pred ------------hccccchhhhhcCCEEEEEeCCeEeeecChHHHhcc
Q 047286 582 ------------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKI 617 (632)
Q Consensus 582 ------------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~ 617 (632)
+++||++..+..||+|++|++|++++.|+.+++++.
T Consensus 185 l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 185 MVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred HHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 677999998889999999999999999999998864
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.1e-17 Score=161.10 Aligned_cols=110 Identities=20% Similarity=0.232 Sum_probs=81.3
Q ss_pred ccccEEEeeEEEEEecCCCChHHHHHhhhcCCChhhh---------c--HHHH----------------------H----
Q 047286 498 VRGDIVFEHTVALVGENGNGKSTVISLAERFHNPEQV---------I--YSWI----------------------I---- 540 (632)
Q Consensus 498 ~~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~~---------~--~~~~----------------------~---- 540 (632)
..-+|.-++.+||+|++|||||||+++|.|+++|++. . .... +
T Consensus 24 ~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~ 103 (218)
T cd03266 24 VSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFA 103 (218)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHH
Confidence 3345555679999999999999999999999877430 0 0000 0
Q ss_pred -----------HHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh----------------------------
Q 047286 541 -----------IKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY---------------------------- 581 (632)
Q Consensus 541 -----------~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~---------------------------- 581 (632)
..+.+.+..+ |++........+||||||||++||||+..
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~ 181 (218)
T cd03266 104 GLYGLKGDELTARLEELADRL--GMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQ 181 (218)
T ss_pred HHcCCCHHHHHHHHHHHHHHc--CCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHH
Confidence 0112233333 55555667778999999999999999654
Q ss_pred --------hccccchhhhh-cCCEEEEEeCCeEeeec
Q 047286 582 --------CGCGSPPYHYK-NADITSVVKNGVIAEKG 609 (632)
Q Consensus 582 --------~~iahrl~~~~-~aD~I~vl~~G~ive~G 609 (632)
+++||++..+. .||+|++|++|++++.|
T Consensus 182 ~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 182 LRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 78899998875 59999999999999875
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1e-16 Score=161.32 Aligned_cols=120 Identities=23% Similarity=0.246 Sum_probs=85.4
Q ss_pred ccccEEEeeEEEEEecCCCChHHHHHhhhcCCC---hhh---------h---cHHHH------------------HH---
Q 047286 498 VRGDIVFEHTVALVGENGNGKSTVISLAERFHN---PEQ---------V---IYSWI------------------II--- 541 (632)
Q Consensus 498 ~~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~---~~~---------~---~~~~~------------------~~--- 541 (632)
+.-+|.-++.+||+||||||||||+++|.|+++ |++ + ..... ..
T Consensus 21 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~~tv~eni~ 100 (246)
T PRK14269 21 INMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVKSIYENIS 100 (246)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCccccccHHHHhh
Confidence 334555567999999999999999999999974 221 0 00000 00
Q ss_pred -----------------HHHHHHhc--CCCccCcccccCCCCCChHHHHHHHHHHHHhh---------------------
Q 047286 542 -----------------KCTNFIAS--LPQGSDLNVGERGLQLSGGLKQRIARTRARNY--------------------- 581 (632)
Q Consensus 542 -----------------~~~~~i~~--lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~--------------------- 581 (632)
.+.+.+.. ++..+.....+.+.+||||||||++||||+..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~ 180 (246)
T PRK14269 101 YAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGV 180 (246)
T ss_pred hHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 01111222 21111233456778999999999999999654
Q ss_pred --------------hccccchhhhh-cCCEEEEEeCCeEeeecChHHHhcc
Q 047286 582 --------------CGCGSPPYHYK-NADITSVVKNGVIAEKGRHDALMKI 617 (632)
Q Consensus 582 --------------~~iahrl~~~~-~aD~I~vl~~G~ive~G~h~eL~~~ 617 (632)
+++||+++.+. .||+|++|++|+|++.|++++++..
T Consensus 181 l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 231 (246)
T PRK14269 181 IEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN 231 (246)
T ss_pred HHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhC
Confidence 78899999774 6999999999999999999999864
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.6e-17 Score=164.14 Aligned_cols=119 Identities=20% Similarity=0.165 Sum_probs=84.7
Q ss_pred cccccEEEeeEEEEEecCCCChHHHHHhhhcCCChhh---------hc-----HHHH-------------------HH-H
Q 047286 497 TVRGDIVFEHTVALVGENGNGKSTVISLAERFHNPEQ---------VI-----YSWI-------------------II-K 542 (632)
Q Consensus 497 ~~~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~~-----~~~~-------------------~~-~ 542 (632)
++.-+|.-++.+||+||||||||||+++|.|+++|++ +. .... +. +
T Consensus 19 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~ 98 (271)
T PRK13638 19 GLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSD 98 (271)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhccccccHHHH
Confidence 3444566667999999999999999999999987743 10 0000 00 0
Q ss_pred H------------------HHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh-----------------------
Q 047286 543 C------------------TNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY----------------------- 581 (632)
Q Consensus 543 ~------------------~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~----------------------- 581 (632)
+ .+.+..+ |++........+||||||||++||||+..
T Consensus 99 l~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~ 176 (271)
T PRK13638 99 IAFSLRNLGVPEAEITRRVDEALTLV--DAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMI 176 (271)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHc--CCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence 0 0111111 22222233457899999999999999654
Q ss_pred -------------hccccchhhhh-cCCEEEEEeCCeEeeecChHHHhcc
Q 047286 582 -------------CGCGSPPYHYK-NADITSVVKNGVIAEKGRHDALMKI 617 (632)
Q Consensus 582 -------------~~iahrl~~~~-~aD~I~vl~~G~ive~G~h~eL~~~ 617 (632)
++++|.+..+. .||+|++|++|+|++.|++++++..
T Consensus 177 ~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 177 AIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 67899999885 5999999999999999999998764
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.4e-17 Score=162.55 Aligned_cols=122 Identities=14% Similarity=0.089 Sum_probs=88.5
Q ss_pred ccEEEeeEEEEEecCCCChHHHHHhhhcCCChhhh---------------------cHHHHHH-----------H----H
Q 047286 500 GDIVFEHTVALVGENGNGKSTVISLAERFHNPEQV---------------------IYSWIII-----------K----C 543 (632)
Q Consensus 500 g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~~---------------------~~~~~~~-----------~----~ 543 (632)
-.|.-++.+||+||+|||||||+++|+|+++|++. .....+. . +
T Consensus 45 ~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~ 124 (264)
T PRK13546 45 LKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMT 124 (264)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHH
Confidence 34555668999999999999999999999887430 0000000 0 0
Q ss_pred HHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh------------------------------------hccccc
Q 047286 544 TNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY------------------------------------CGCGSP 587 (632)
Q Consensus 544 ~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~------------------------------------~~iahr 587 (632)
.+.+.. -+++..+......||||||||++||||+.. ++++|.
T Consensus 125 ~~~l~~--~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~ 202 (264)
T PRK13546 125 PKIIEF--SELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHN 202 (264)
T ss_pred HHHHHH--cCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 111111 134444555677899999999999999654 788999
Q ss_pred hhhhh-cCCEEEEEeCCeEeeecChHHHhccCCchhHH
Q 047286 588 PYHYK-NADITSVVKNGVIAEKGRHDALMKITDGTYAS 624 (632)
Q Consensus 588 l~~~~-~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~ 624 (632)
+..+. .||+|++|++|+|++.|++++++.+ -+.|.+
T Consensus 203 ~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~~-~~~~~~ 239 (264)
T PRK13546 203 LGQVRQFCTKIAWIEGGKLKDYGELDDVLPK-YEAFLN 239 (264)
T ss_pred HHHHHHHcCEEEEEECCEEEEeCCHHHHHHH-hHHHHH
Confidence 99875 5999999999999999999999986 333433
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.1e-17 Score=172.23 Aligned_cols=122 Identities=20% Similarity=0.198 Sum_probs=87.1
Q ss_pred cEEEeeEEEEEecCCCChHHHHHhhhcCCChhh---------h---cHHHH----------------------H------
Q 047286 501 DIVFEHTVALVGENGNGKSTVISLAERFHNPEQ---------V---IYSWI----------------------I------ 540 (632)
Q Consensus 501 ~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~---~~~~~----------------------~------ 540 (632)
+|.-++.++|+||+|||||||+++|.|+++|.+ + ..... +
T Consensus 25 ~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~ 104 (402)
T PRK09536 25 SVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTP 104 (402)
T ss_pred EECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccch
Confidence 445556899999999999999999999988743 0 10000 0
Q ss_pred -------------HHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh--------------------------
Q 047286 541 -------------IKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY-------------------------- 581 (632)
Q Consensus 541 -------------~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~-------------------------- 581 (632)
..+.+.+..+ |+.........+||||||||++||||+..
T Consensus 105 ~~~~~~~~~~~~~~~v~~~le~v--gl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL 182 (402)
T PRK09536 105 HRSRFDTWTETDRAAVERAMERT--GVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELV 182 (402)
T ss_pred hcccccCCCHHHHHHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHH
Confidence 0011111111 23222334456899999999999999654
Q ss_pred ----------hccccchhhh-hcCCEEEEEeCCeEeeecChHHHhccCCchhHHHH
Q 047286 582 ----------CGCGSPPYHY-KNADITSVVKNGVIAEKGRHDALMKITDGTYASLT 626 (632)
Q Consensus 582 ----------~~iahrl~~~-~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~ 626 (632)
++++|.++.+ +.||+|++|++|+|++.|+++|++.. ....+++
T Consensus 183 ~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~~--~~l~~~~ 236 (402)
T PRK09536 183 RRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTA--DTLRAAF 236 (402)
T ss_pred HHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhCc--HHHHHHh
Confidence 6779999998 57999999999999999999999864 4555554
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.1e-17 Score=160.11 Aligned_cols=111 Identities=24% Similarity=0.173 Sum_probs=81.1
Q ss_pred cccEEEeeEEEEEecCCCChHHHHHhhhcCCChhhhc-----------------------------HHHH----------
Q 047286 499 RGDIVFEHTVALVGENGNGKSTVISLAERFHNPEQVI-----------------------------YSWI---------- 539 (632)
Q Consensus 499 ~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~~~-----------------------------~~~~---------- 539 (632)
.-+|.-++++||+||+|||||||+++|.|+++|++.. ....
T Consensus 24 s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~ 103 (220)
T cd03293 24 SLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVALGLELQGV 103 (220)
T ss_pred eEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEecccccccCCCHHHHHHHHHHHcCC
Confidence 3355666799999999999999999999998774300 0000
Q ss_pred -----HHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh---------------------------------
Q 047286 540 -----IIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY--------------------------------- 581 (632)
Q Consensus 540 -----~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~--------------------------------- 581 (632)
...+.+.+..+ |++........+||||||||++||||+..
T Consensus 104 ~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~ 181 (220)
T cd03293 104 PKAEARERAEELLELV--GLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRET 181 (220)
T ss_pred CHHHHHHHHHHHHHHc--CChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 00122333333 45444555667899999999999999554
Q ss_pred ----hccccchhhh-hcCCEEEEEe--CCeEeeecCh
Q 047286 582 ----CGCGSPPYHY-KNADITSVVK--NGVIAEKGRH 611 (632)
Q Consensus 582 ----~~iahrl~~~-~~aD~I~vl~--~G~ive~G~h 611 (632)
++++|+++.+ +.||+|++|+ +|+|+++++-
T Consensus 182 ~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 182 GKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred CCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 6889999876 4699999999 7999998864
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.1e-17 Score=154.83 Aligned_cols=108 Identities=25% Similarity=0.232 Sum_probs=78.8
Q ss_pred ccEEEeeEEEEEecCCCChHHHHHhhhcCCChhhh------------cHHHH---HHHHHHHHhcCCCccCcccccCCCC
Q 047286 500 GDIVFEHTVALVGENGNGKSTVISLAERFHNPEQV------------IYSWI---IIKCTNFIASLPQGSDLNVGERGLQ 564 (632)
Q Consensus 500 g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~~------------~~~~~---~~~~~~~i~~lp~g~dt~vge~G~~ 564 (632)
-+|.-++.++|+||||||||||+++|.|+++|++. ..... +.-+.+++..+ |++........+
T Consensus 20 ~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~--gl~~~~~~~~~~ 97 (180)
T cd03214 20 LSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELL--GLAHLADRPFNE 97 (180)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHc--CCHhHhcCCccc
Confidence 34555568999999999999999999999988651 11110 11111122222 344344556789
Q ss_pred CChHHHHHHHHHHHHhh-------------------------------------hccccchhhh-hcCCEEEEEeCCeEe
Q 047286 565 LSGGLKQRIARTRARNY-------------------------------------CGCGSPPYHY-KNADITSVVKNGVIA 606 (632)
Q Consensus 565 LSgGQrQRiaiARA~~~-------------------------------------~~iahrl~~~-~~aD~I~vl~~G~iv 606 (632)
||||||||++||||+.. ++++|+++.+ +.||+|++|++|+++
T Consensus 98 LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~ 177 (180)
T cd03214 98 LSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIV 177 (180)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999544 6789999987 679999999999998
Q ss_pred eec
Q 047286 607 EKG 609 (632)
Q Consensus 607 e~G 609 (632)
+.|
T Consensus 178 ~~~ 180 (180)
T cd03214 178 AQG 180 (180)
T ss_pred ecC
Confidence 765
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 632 | ||||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 2e-25 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 9e-09 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 3e-25 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 2e-08 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 2e-23 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 3e-04 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 4e-23 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 2e-21 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 5e-16 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 5e-23 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 2e-21 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 4e-17 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 5e-23 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 4e-04 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 8e-23 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 3e-04 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 9e-23 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 5e-04 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 1e-22 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 5e-04 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 5e-22 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 2e-14 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 4e-21 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 7e-07 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 1e-19 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 8e-05 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 2e-19 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 6e-05 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 2e-19 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 6e-05 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 2e-19 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 6e-05 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 3e-19 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 7e-05 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 4e-19 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 3e-05 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 4e-19 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 3e-05 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 7e-18 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 3e-05 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 3e-12 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 1e-04 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 3e-07 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 3e-05 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 5e-07 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 1e-05 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-05 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-05 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 3e-04 |
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 244 bits (625), Expect = 2e-69
Identities = 116/450 (25%), Positives = 168/450 (37%), Gaps = 111/450 (24%)
Query: 47 MPLGQTSLNVNAFAAGQAAACKMFETIERIPKINPYDNRFLQ------------------ 88
+GQ S N+ AFA + AA ++F+ I+ P I+ + +
Sbjct: 339 FSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYP 398
Query: 89 -------------HVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQ---------- 125
V SG TVALVG SG GKST + L++ R Y P
Sbjct: 399 SRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQ--RLYDPLDGMVSIDGQDIRT 456
Query: 126 -------EKIGLVSKEPIFLFCDF---NEGQYIPYGKQNASDEHIRPAVQLANAEKSIDK 175
E IG+VS+EP LF N I YG+++ + + I AV+ ANA I K
Sbjct: 457 INVRYLREIIGVVSQEP-VLFATTIAEN----IRYGREDVTMDEIEKAVKEANAYDFIMK 511
Query: 176 LPLGLDTVV--------------------------------ATNAVDAQSERIVQAAMVK 203
LP DT+V AT+A+D +SE +VQAA+ K
Sbjct: 512 LPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDK 571
Query: 204 LVTNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQEGAKE 263
+T +++A+ L T+RNAD I G IVE+G HDEL+ + +G Y +LV Q E
Sbjct: 572 AREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMRE-KGIYFKLVMTQTAGNE 630
Query: 264 AQD----------------KSLGVKHILRGFPGPIGVYETAERSEDRIEKDPTEIEKRKK 307
+ S L + ++ E
Sbjct: 631 IELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRKSICGPHDQDRKLSTKEALDEDVPP 690
Query: 308 VSVTRLAYANRSEVPILLIGSIAAVI---VFPIFGLLLSTSINIGAVGARLSTDASAVRS 364
S R+ N +E P ++G A+I + P F ++ S + + G T
Sbjct: 691 ASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNL 750
Query: 365 VVGDALGL-IIQNIATIAAGLVIAFTAWKL 393
L L II I G L
Sbjct: 751 FSLLFLILGIISFITFFLQGFTFGKAGEIL 780
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 190 bits (484), Expect = 4e-51
Identities = 90/307 (29%), Positives = 132/307 (42%), Gaps = 93/307 (30%)
Query: 47 MPLGQTSLNVNAFAAGQAAACKMFETIERIPKINPYDNRFLQ------------------ 88
M +GQ S +A +A + IE+ P+I+ Y + L+
Sbjct: 982 MAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYP 1041
Query: 89 -------------HVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQ---------- 125
V G T+ALVG SG GKSTV+ L+E RFY P A
Sbjct: 1042 TRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLE--RFYDPMAGSVFLDGKEIKQ 1099
Query: 126 -------EKIGLVSKEPIFLFCD---FNEGQYIPYGK--QNASDEHIRPAVQLANAEKSI 173
++G+VS+EPI LF N I YG + S E I A + AN + I
Sbjct: 1100 LNVQWLRAQLGIVSQEPI-LFDCSIAEN----IAYGDNSRVVSYEEIVRAAKEANIHQFI 1154
Query: 174 DKLPLGLDTVV--------------------------------ATNAVDAQSERIVQAAM 201
D LP +T V AT+A+D +SE++VQ A+
Sbjct: 1155 DSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEAL 1214
Query: 202 VKLVTNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQEGA 261
K +T +++A+ L TI+NAD I+++ GK+ E GTH +L+ +G Y +V +Q GA
Sbjct: 1215 DKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLA-QKGIYFSMVSVQAGA 1273
Query: 262 KEAQDKS 268
K +
Sbjct: 1274 KRSYVHH 1280
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 1e-26
Identities = 44/140 (31%), Positives = 62/140 (44%), Gaps = 27/140 (19%)
Query: 421 INAFCFFIGSKLVEHGDATFGEVFKFLSE--FGCFWCLESTAVAPNADKAKGSAASIFEI 478
A F G+ LV TF V S FG + ++ AP+ KA SA+ I I
Sbjct: 948 SYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRI 1007
Query: 479 LESKPKIDWSSKDGMTPSTVRGDIVFEH-------------------------TVALVGE 513
+E P+ID S G+ P+ + G++ F T+ALVG
Sbjct: 1008 IEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGS 1067
Query: 514 NGNGKSTVISLAERFHNPEQ 533
+G GKSTV+ L ERF++P
Sbjct: 1068 SGCGKSTVVQLLERFYDPMA 1087
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 7e-22
Identities = 38/139 (27%), Positives = 64/139 (46%), Gaps = 27/139 (19%)
Query: 422 NAFCFFIGSKLVEHGDATFGEVFKFLSE--FGCFWCLESTAVAPNADKAKGSAASIFEIL 479
A F+ G+ LV + + G+V G F +++ A+G+A +F+I+
Sbjct: 306 YALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKII 365
Query: 480 ESKPKIDWSSKDGMTPSTVRGDIVFEH-------------------------TVALVGEN 514
++KP ID SK G P ++G++ F++ TVALVG +
Sbjct: 366 DNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNS 425
Query: 515 GNGKSTVISLAERFHNPEQ 533
G GKST + L +R ++P
Sbjct: 426 GCGKSTTVQLMQRLYDPLD 444
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 2e-14
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 347 NIGAVGARLSTDASAVRSVVGDALGLIIQNIATIAAGLVIAFT-AWKLAFITLAVPSLTI 405
GA+ RL+ DA+ V+ G L +I QNIA + G++I+ W+L + LA+ +
Sbjct: 806 TTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIA 865
Query: 406 AEGYLKKK--KNYERLHINAF 424
G ++ K
Sbjct: 866 IAGVVEMKMLSGQALKDKKEL 886
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 2e-10
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 345 SINIGAVGARLSTDASAVRSVVGDALGLIIQNIATIAAGLVIAFT-AWKLAFITLA-VPS 402
++G + RL+ D S + +GD +G+ Q +AT G +I FT WKL + LA P
Sbjct: 161 VHDVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPV 220
Query: 403 LTIAEGYLKK 412
L ++ G K
Sbjct: 221 LGLSAGIWAK 230
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 1e-09
Identities = 35/134 (26%), Positives = 45/134 (33%), Gaps = 58/134 (43%)
Query: 545 NFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNYCGCGSPPYHYKNADI------TS 598
FI SLP + VG++G QLSGG KQRIA RA + I TS
Sbjct: 1152 QFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARAL-----------VRQPHILLLDEATS 1200
Query: 599 --------VVKNG-----------VIA---------------------EKGRHDALMKIT 618
VV+ VIA E G H L+
Sbjct: 1201 ALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLA-Q 1259
Query: 619 DGTYASLTALHMSS 632
G Y S+ ++ +
Sbjct: 1260 KGIYFSMVSVQAGA 1273
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 7e-09
Identities = 22/34 (64%), Positives = 23/34 (67%)
Query: 545 NFIASLPQGSDLNVGERGLQLSGGLKQRIARTRA 578
+FI LP D VGERG QLSGG KQRIA RA
Sbjct: 507 DFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARA 540
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 9e-05
Identities = 22/114 (19%), Positives = 44/114 (38%), Gaps = 6/114 (5%)
Query: 289 ERSEDRIEKDPTEIEKRKKVSVTRL-AYANRSEVPILLIGSIAAVI---VFPIFGLLLST 344
S+ + + EK+ VSV + YA + +L+G++AA+I P+ L+
Sbjct: 14 NFSKMGKKSKKEKKEKKPAVSVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGD 73
Query: 345 SIN-IGAVGARLSTDASAVRSVVGDALGLIIQNIATIAAGLV-IAFTAWKLAFI 396
+ +VG + + + + + T A I +A+I
Sbjct: 74 MTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYYYTGIGAGVLIVAYI 127
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 4e-04
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 592 KNADITSVVKNGVIAEKGRHDALMKITDGTYASL 625
+NAD+ + GVI E+G HD LM+ G Y L
Sbjct: 589 RNADVIAGFDGGVIVEQGNHDELMR-EKGIYFKL 621
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 192 bits (491), Expect = 2e-57
Identities = 69/222 (31%), Positives = 104/222 (46%), Gaps = 59/222 (26%)
Query: 89 HVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQ-----------------EKIGLV 131
+ G + +VG+SGSGKST+ L++ RFY PE Q ++G+V
Sbjct: 31 SIKQGEVIGIVGRSGSGKSTLTKLIQ--RFYIPENGQVLIDGHDLALADPNWLRRQVGVV 88
Query: 132 SKEPIFLFCD---FNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV---- 184
++ L N I S E + A +LA A I +L G +T+V
Sbjct: 89 LQDN-VLLNRSIIDN----ISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQG 143
Query: 185 ----------------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANC 216
AT+A+D +SE ++ M K+ +TV+I+A+
Sbjct: 144 AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHR 203
Query: 217 LITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQ 258
L T++NAD II++ KGKIVE+G H EL+ +PE YS L +LQ
Sbjct: 204 LSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 245
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 83.7 bits (208), Expect = 3e-18
Identities = 51/247 (20%), Positives = 75/247 (30%), Gaps = 122/247 (49%)
Query: 498 VRGDIVFEH------------------------TVALVGENGNGKSTVI----------- 522
DI F + + +VG +G+GKST+
Sbjct: 4 HHHDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPEN 63
Query: 523 ----------------------------------SLAE--RFHNP----EQVIYSWIIIK 542
S+ + NP E+VIY+ +
Sbjct: 64 GQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAG 123
Query: 543 CTNFIASLPQGSDLNVGERGLQLSGGLKQR--IARTRARNYCGCGSPPY----------- 589
+FI+ L +G + VGE+G LSGG +QR IAR N P
Sbjct: 124 AHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNN------PKILIFDEATSALD 177
Query: 590 ------------------------H----YKNADITSVVKNGVIAEKGRHDALMKITDGT 621
H KNAD V++ G I E+G+H L+ +
Sbjct: 178 YESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESL 237
Query: 622 YASLTAL 628
Y+ L L
Sbjct: 238 YSYLYQL 244
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 181 bits (461), Expect = 1e-52
Identities = 57/230 (24%), Positives = 89/230 (38%), Gaps = 59/230 (25%)
Query: 89 HVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQ-----------------EKIGLV 131
+ G ALVG +GSGKSTV L++ Y P + ++ V
Sbjct: 41 TLYPGKVTALVGPNGSGKSTVAALLQ--NLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAV 98
Query: 132 SKEPIFLF-CDFNEGQYIPYGK-QNASDEHIRPAVQLANAEKSIDKLPLGLDTVV----- 184
+EP+ LF F E I YG + + E I + A I P G DT V
Sbjct: 99 GQEPL-LFGRSFREN--IAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGN 155
Query: 185 ---------------------------ATNAVDAQSERIVQAAMVKL--VTNQTVVIVAN 215
AT+A+DA ++ VQ + + ++TV+++
Sbjct: 156 QLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQ 215
Query: 216 CLITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQEGAKEAQ 265
L A I+ + +G + E+GTH +L+E G Y +V +A
Sbjct: 216 QLSLAERAHHILFLKEGSVCEQGTHLQLME-RGGCYRSMVEALAAPSDAA 264
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 60.2 bits (147), Expect = 3e-10
Identities = 19/34 (55%), Positives = 23/34 (67%)
Query: 545 NFIASLPQGSDLNVGERGLQLSGGLKQRIARTRA 578
+FI+ PQG D VGE G QLSGG +Q +A RA
Sbjct: 137 DFISGFPQGYDTEVGETGNQLSGGQRQAVALARA 170
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 1e-09
Identities = 16/74 (21%), Positives = 26/74 (35%), Gaps = 26/74 (35%)
Query: 485 IDWSSKDGMTPSTVRGDIVFEH-------------------------TVALVGENGNGKS 519
+ + P ++G + F+ ALVG NG+GKS
Sbjct: 1 MS-PLSGSLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKS 59
Query: 520 TVISLAERFHNPEQ 533
TV +L + + P
Sbjct: 60 TVAALLQNLYQPTG 73
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 2e-06
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 592 KNADITSVVKNGVIAEKGRHDALMKITDGTYASLTALHMSS 632
+ A +K G + E+G H LM+ G Y S+ +
Sbjct: 221 ERAHHILFLKEGSVCEQGTHLQLME-RGGCYRSMVEALAAP 260
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 175 bits (447), Expect = 4e-51
Identities = 58/228 (25%), Positives = 98/228 (42%), Gaps = 61/228 (26%)
Query: 89 HVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQ-----------------EKIGLV 131
+ +A G SG GKST+ +L+E RFY P A + +IG V
Sbjct: 24 EAQPNSIIAFAGPSGGGKSTIFSLLE--RFYQPTAGEITIDGQPIDNISLENWRSQIGFV 81
Query: 132 SKEPIFLFCD---FNEGQYIPYGKQ-NASDEHIRPAVQLANAEKSIDKLPLGLDTVV--- 184
S++ + N + YG + + +DE + + LA A ++ +P L+T V
Sbjct: 82 SQDS-AIMAGTIREN----LTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGER 136
Query: 185 -----------------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVAN 215
AT ++D++SE +VQ A+ L+ +T +++A+
Sbjct: 137 GVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAH 196
Query: 216 CLITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQEGAKE 263
L TI +AD I + KG+I G H+EL+ Y++ V Q +
Sbjct: 197 RLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVSEQLTVGQ 243
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 74.8 bits (185), Expect = 3e-15
Identities = 29/129 (22%), Positives = 48/129 (37%), Gaps = 48/129 (37%)
Query: 545 NFIASLPQGSDLNVGERGLQLSGGLKQRIARTRA--RNYCGCGSPPY------------- 589
+F+ ++P + VGERG+++SGG +QR+A RA RN P
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRN------PKILMLDEATASLDSE 173
Query: 590 ----------------------H----YKNADITSVVKNGVIAEKGRHDALMKITDGTYA 623
H +AD ++ G I G+H+ L+ T YA
Sbjct: 174 SESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVA-THPLYA 232
Query: 624 SLTALHMSS 632
+ ++
Sbjct: 233 KYVSEQLTV 241
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 45.9 bits (110), Expect = 2e-05
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 507 TVALVGENGNGKSTVISLAERFHNPEQ 533
+A G +G GKST+ SL ERF+ P
Sbjct: 30 IIAFAGPSGGGKSTIFSLLERFYQPTA 56
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 171 bits (435), Expect = 3e-49
Identities = 74/226 (32%), Positives = 118/226 (52%), Gaps = 59/226 (26%)
Query: 89 HVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAE----------------QEKIGLVS 132
+PSGTT ALVG +GSGKST+ L+ +RFY E + + IG+V
Sbjct: 42 FIPSGTTCALVGHTGSGKSTIAKLL--YRFYDAEGDIKIGGKNVNKYNRNSIRSIIGIVP 99
Query: 133 KEPIFLFCD---FNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV----- 184
++ I LF + +N I YGK +A+DE + A + A I+ LP DT+V
Sbjct: 100 QDTI-LFNETIKYN----ILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGM 154
Query: 185 ---------------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCL 217
AT+++D+++E + Q A+ L N+T++I+A+ L
Sbjct: 155 KLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRL 214
Query: 218 ITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQEGAKE 263
TI +A+ II+++KGKIVEKGTH +L++ G Y+++ +Q G +
Sbjct: 215 STISSAESIILLNKGKIVEKGTHKDLLKL-NGEYAEMWNMQSGGND 259
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 73.4 bits (181), Expect = 1e-14
Identities = 31/122 (25%), Positives = 48/122 (39%), Gaps = 48/122 (39%)
Query: 545 NFIASLPQGSDLNVGERGLQLSGGLKQR--IARTRARNYCGCGSPPY------------- 589
+FI +LP+ D VG +G++LSGG +QR IAR ++ P
Sbjct: 136 DFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKD------PKIVIFDEATSSLDSK 189
Query: 590 ----------------------H----YKNADITSVVKNGVIAEKGRHDALMKITDGTYA 623
H +A+ ++ G I EKG H L+K+ +G YA
Sbjct: 190 TEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKL-NGEYA 248
Query: 624 SL 625
+
Sbjct: 249 EM 250
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 7e-05
Identities = 18/77 (23%), Positives = 25/77 (32%), Gaps = 26/77 (33%)
Query: 485 IDWSSKDGMTPSTVRGDIVFEH-------------------------TVALVGENGNGKS 519
++ S +I F T ALVG G+GKS
Sbjct: 2 LESFSLTSHEKK-FGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKS 60
Query: 520 TVISLAERFHNPEQVIY 536
T+ L RF++ E I
Sbjct: 61 TIAKLLYRFYDAEGDIK 77
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 161 bits (410), Expect = 4e-45
Identities = 69/232 (29%), Positives = 108/232 (46%), Gaps = 60/232 (25%)
Query: 89 HVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQ-----------------EKIGLV 131
V G T+ALVG SG+GKST++ L+ FRFY + IG+V
Sbjct: 76 TVMPGQTLALVGPSGAGKSTILRLL--FRFYDISSGCIRIDGQDISQVTQASLRSHIGVV 133
Query: 132 SKEPIFLFCD---FNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV---- 184
++ LF D N I YG+ A ++ + A Q A +I P G T V
Sbjct: 134 PQDT-VLFNDTIADN----IRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERG 188
Query: 185 ----------------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANC 216
AT+A+D +ER +QA++ K+ N+T ++VA+
Sbjct: 189 LKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHR 248
Query: 217 LITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQEGAKEAQDKS 268
L T+ NAD I+++ G IVE+G H+ L+ G Y+ + +LQ+G +E + +
Sbjct: 249 LSTVVNADQILVIKDGCIVERGRHEALLSR-GGVYADMWQLQQGQEETSEDT 299
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 4e-13
Identities = 38/122 (31%), Positives = 49/122 (40%), Gaps = 48/122 (39%)
Query: 545 NFIASLPQGSDLNVGERGLQLSGGLKQR--IARTRARNYCGCGSPPY------------- 589
+ I + P+G VGERGL+LSGG KQR IART + P
Sbjct: 171 DAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKA------PGIILLDEATSALDTS 224
Query: 590 ----------------------H----YKNADITSVVKNGVIAEKGRHDALMKITDGTYA 623
H NAD V+K+G I E+GRH+AL+ G YA
Sbjct: 225 NERAIQASLAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLS-RGGVYA 283
Query: 624 SL 625
+
Sbjct: 284 DM 285
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 4e-06
Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 24/86 (27%)
Query: 471 SAASIFEILESKPKIDWSSKDGMTPSTVRGDIVFEH-----------------------T 507
++F++L+ + ++ +G I FE+ T
Sbjct: 24 DMENMFDLLKEETEVK-DLPGAGPLRFQKGRIEFENVHFSYADGRETLQDVSFTVMPGQT 82
Query: 508 VALVGENGNGKSTVISLAERFHNPEQ 533
+ALVG +G GKST++ L RF++
Sbjct: 83 LALVGPSGAGKSTILRLLFRFYDISS 108
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 164 bits (418), Expect = 8e-44
Identities = 90/338 (26%), Positives = 140/338 (41%), Gaps = 96/338 (28%)
Query: 1 MAACLPAIVIAGGITATVVAKLSCRGQIAYAEAEMLLSTQLEPLEDMPLGQTSLNVNAFA 60
+A+ A V+ +V+ L+ + + L PL + F
Sbjct: 258 IASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMR--------PLKSLTNVNAQFQ 309
Query: 61 AGQAAACKMFETIERIPKINP--------------------YDNRFLQ-------HVPSG 93
G AA +F ++ + + Y R + +P+G
Sbjct: 310 RGMAACQTLFAILDSEQEKDEGKRVIDRATGDLEFRNVTFTYPGREVPALRNINLKIPAG 369
Query: 94 TTVALVGQSGSGKSTVINLVESFRFYAPEAEQ-----------------EKIGLVSKEPI 136
TVALVG+SGSGKST+ +L+ RFY + ++ LVS+
Sbjct: 370 KTVALVGRSGSGKSTIASLIT--RFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNV- 426
Query: 137 FLFCD---FNEGQYIPYGKQNA-SDEHIRPAVQLANAEKSIDKLPLGLDTVV-------- 184
LF D N I Y + S E I A ++A A I+K+ GLDT++
Sbjct: 427 HLFNDTVANN----IAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLS 482
Query: 185 ------------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITI 220
AT+A+D +SER +QAA+ +L N+T +++A+ L TI
Sbjct: 483 GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTI 542
Query: 221 RNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQ 258
AD I++V G IVE+GTH EL+ G Y+QL ++Q
Sbjct: 543 EQADEIVVVEDGIIVERGTHSELLAQ-HGVYAQLHKMQ 579
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 99 bits (250), Expect = 3e-22
Identities = 81/431 (18%), Positives = 130/431 (30%), Gaps = 156/431 (36%)
Query: 328 SIAAVIVFPIFGLLLSTSINIGAVGARLSTDASAVRSVVGDALGLIIQNIATIAAGLVIA 387
SI V++ PI + I V R + + +++ +G Q + V+
Sbjct: 168 SIILVVLAPIVSIA------IRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHK--EVLI 219
Query: 388 FTAWKLAFITLAVPSLTIAEGYLKKKKNYERLH---------INAFCFFIGSKLVEHGDA 438
F ++ S + +K AF + S
Sbjct: 220 FGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSL 279
Query: 439 TFGEVFKFLSEFGCFWC-LES-TAVAPNADKAKGSAASIFEILESKPKIDWSSKDGMTPS 496
T G + S L+S T V + + ++F IL+S+ + D +
Sbjct: 280 TAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDEGKR---VID 336
Query: 497 TVRGDIVFEH------------------------TVALVGENGNGKSTVISLAERFHNP- 531
GD+ F + TVALVG +G+GKST+ SL RF++
Sbjct: 337 RATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID 396
Query: 532 ---------------------------------------------------EQVIYSWII 540
EQ+ + +
Sbjct: 397 EGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARM 456
Query: 541 IKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNYCGCGSPPYHYKNADI---- 596
+FI + G D +GE G+ LSGG +QRIA RA +++ I
Sbjct: 457 AYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARA-----------LLRDSPILILD 505
Query: 597 --TS----------------------------------------VVKNGVIAEKGRHDAL 614
TS VV++G+I E+G H L
Sbjct: 506 EATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSEL 565
Query: 615 MKITDGTYASL 625
+ G YA L
Sbjct: 566 LA-QHGVYAQL 575
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 2e-04
Identities = 17/69 (24%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 347 NIGAVGARLSTDASAVRSVVGDALGLIIQNIATIAAGLVIAF-TAWKLAFITLAV-PSLT 404
+ G + +R++ D+ V S AL +++ A+I ++ F +W+L+ I + + P ++
Sbjct: 120 STGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVS 179
Query: 405 IAEGYLKKK 413
IA + K+
Sbjct: 180 IAIRVVSKR 188
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 164 bits (418), Expect = 8e-44
Identities = 92/338 (27%), Positives = 143/338 (42%), Gaps = 96/338 (28%)
Query: 1 MAACLPAIVIAGGITATVVAKLSCRGQIAYAEAEMLLSTQLEPLEDMPLGQTSLNVNAFA 60
+A+ V+ ++ A+L+ A L PL + + F
Sbjct: 258 IASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMR--------PLKALTSVTSEFQ 309
Query: 61 AGQAAACKMFETIERIPKINP-------------YDN-RF---------LQH----VPSG 93
G AA +F ++ + + + F L H +P G
Sbjct: 310 RGMAACQTLFGLMDLETERDNGKYEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQG 369
Query: 94 TTVALVGQSGSGKSTVINLVESFRFYAPEAEQ-----------------EKIGLVSKEPI 136
TVALVG+SGSGKST+ NL RFY ++ LVS+
Sbjct: 370 KTVALVGRSGSGKSTIANLFT--RFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNV- 426
Query: 137 FLFCD---FNEGQYIPYGKQ-NASDEHIRPAVQLANAEKSIDKLPLGLDTVV-------- 184
LF D N I Y + + E I A + A+A + I+ +P GLDTV+
Sbjct: 427 HLFNDTIANN----IAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLS 482
Query: 185 ------------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITI 220
AT+A+D +SER +QAA+ +L N+TV+++A+ L TI
Sbjct: 483 GGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTI 542
Query: 221 RNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQ 258
AD I++V +G+I+E+G H +L+ +GAY+QL R+Q
Sbjct: 543 EQADEILVVDEGEIIERGRHADLLAQ-DGAYAQLHRIQ 579
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 2e-22
Identities = 74/431 (17%), Positives = 129/431 (29%), Gaps = 156/431 (36%)
Query: 328 SIAAVIVFPIFGLLLSTSINIGAVGARLSTDASAVRSVVGDALGLIIQNIATIAAGLVIA 387
S+ ++V P+ I V R + +++ +G Q + +V++
Sbjct: 168 SLVLIVVAPVVAFA------ISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHK--VVLS 219
Query: 388 FTAWKLAFITLAVPSLTIAEGYLKKKKNYERLH---------INAFCFFIGSKLVEHGDA 438
+ ++ S ++ + +K F+ S +
Sbjct: 220 YGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAEL 279
Query: 439 TFGEVFKFLSEFGCFWC-LES-TAVAPNADKAKGSAASIFEILESKPKIDWSSKDGMTPS 496
T G S L++ T+V + + ++F +++ + + D
Sbjct: 280 TPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERD---NGKYEAE 336
Query: 497 TVRGDIVFEH------------------------TVALVGENGNGKSTVISLAERFHNP- 531
V G++ + TVALVG +G+GKST+ +L RF++
Sbjct: 337 RVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVD 396
Query: 532 ---------------------------------------------------EQVIYSWII 540
EQ+ +
Sbjct: 397 SGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQ 456
Query: 541 IKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNYCGCGSPPYHYKNADI---- 596
FI ++PQG D +GE G LSGG +QR+A RA ++A +
Sbjct: 457 AHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARA-----------LLRDAPVLILD 505
Query: 597 --TS----------------------------------------VVKNGVIAEKGRHDAL 614
TS VV G I E+GRH L
Sbjct: 506 EATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADL 565
Query: 615 MKITDGTYASL 625
+ DG YA L
Sbjct: 566 LA-QDGAYAQL 575
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 161 bits (411), Expect = 7e-43
Identities = 86/292 (29%), Positives = 122/292 (41%), Gaps = 89/292 (30%)
Query: 48 PLGQTSLNVNAFAAGQAAACKMFETIERIPKI-------------------------NPY 82
PL + + A+ ++F+ I+ I N
Sbjct: 293 PLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDN 352
Query: 83 DNRFLQ----HVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQ------------- 125
+ L+ + G TVA VG SG GKST+INL+ RFY + Q
Sbjct: 353 EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIP--RFYDVTSGQILIDGHNIKDFLT 410
Query: 126 ----EKIGLVSKEPIFLFCD---FNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPL 178
+IGLV ++ LF D N I G+ A+DE + A ++ANA I LP
Sbjct: 411 GSLRNQIGLVQQDN-ILFSDTVKEN----ILLGRPTATDEEVVEAAKMANAHDFIMNLPQ 465
Query: 179 GLDTVV--------------------------------ATNAVDAQSERIVQAAMVKLVT 206
G DT V AT+A+D +SE I+Q A+ L
Sbjct: 466 GYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK 525
Query: 207 NQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQ 258
++T +IVA+ L TI +AD I+++ G IVE GTH ELI +GAY L +Q
Sbjct: 526 DRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK-QGAYEHLYSIQ 576
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 64.5 bits (158), Expect = 5e-11
Identities = 27/137 (19%), Positives = 47/137 (34%), Gaps = 27/137 (19%)
Query: 423 AFCFFIGSKLVEHGDATFGEVFKFLSEFGCFWC-LESTA-VAPNADKAKGSAASIFEILE 480
+G+ L G T G + F+ + L ++ S +F++++
Sbjct: 260 IIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLID 319
Query: 481 SKPKIDWSSKDGMTPSTVRGDIVFEH------------------------TVALVGENGN 516
I + +G I +H TVA VG +G
Sbjct: 320 EDYDIK-NGVGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGG 378
Query: 517 GKSTVISLAERFHNPEQ 533
GKST+I+L RF++
Sbjct: 379 GKSTLINLIPRFYDVTS 395
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 63.7 bits (156), Expect = 8e-11
Identities = 39/121 (32%), Positives = 46/121 (38%), Gaps = 48/121 (39%)
Query: 546 FIASLPQGSDLNVGERGLQLSGGLKQR--IARTRARNYCGCGSPPY-------------- 589
FI +LPQG D VGERG++LSGG KQR IAR N PP
Sbjct: 459 FIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNN------PPILILDEATSALDLES 512
Query: 590 ---------------------H----YKNADITSVVKNGVIAEKGRHDALMKITDGTYAS 624
H +AD V++NG I E G H L+ G Y
Sbjct: 513 ESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIA-KQGAYEH 571
Query: 625 L 625
L
Sbjct: 572 L 572
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 134 bits (340), Expect = 2e-33
Identities = 74/230 (32%), Positives = 112/230 (48%), Gaps = 60/230 (26%)
Query: 89 HVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQ-----------------EKIGLV 131
H+ G VALVG +GSGK+T++NL+ RFY + Q IG+V
Sbjct: 377 HIKPGQKVALVGPTGSGKTTIVNLLM--RFYDVDRGQILVDGIDIRKIKRSSLRSSIGIV 434
Query: 132 SKEPIFLFCDFNEG---QYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV---- 184
++ LF + + YG A+DE I+ A +L +++ I LP G +TV+
Sbjct: 435 LQDT-ILF----STTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNG 489
Query: 185 ----------------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANC 216
AT+ VD ++E+ +QAAM KL+ +T +I+A+
Sbjct: 490 EDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHR 549
Query: 217 LITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQEGAKEAQD 266
L TI+NAD II++ G+IVE G HDELI+ G Y +L Q G ++
Sbjct: 550 LNTIKNADLIIVLRDGEIVEMGKHDELIQK-RGFYYELFTSQYGLVVEKE 598
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 2e-08
Identities = 35/131 (26%), Positives = 50/131 (38%), Gaps = 27/131 (20%)
Query: 423 AFCFFIGSKLVEHGDATFGEVFKFLSEFGCFW--CLESTAVAPNADKAKGSAASIFEILE 480
A G L T G + F+ F E + A SA IFEIL+
Sbjct: 276 ALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILD 335
Query: 481 SKPKIDWSSKDGMTPSTVRGDIVFEH-----------------------TVALVGENGNG 517
+ + D D + VRG+I F++ VALVG G+G
Sbjct: 336 LEEEKD--DPDAVELREVRGEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSG 393
Query: 518 KSTVISLAERF 528
K+T+++L RF
Sbjct: 394 KTTIVNLLMRF 404
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 2e-27
Identities = 54/228 (23%), Positives = 94/228 (41%), Gaps = 56/228 (24%)
Query: 89 HVPSGTTVALVGQSGSGKSTVINLVESF---------------RFYAPEAEQEKIGLVSK 133
V G+ VA++G++GSGKST++NL+ R + + I V +
Sbjct: 365 SVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQ 424
Query: 134 EPIFLFCDFNEG---QYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVVA---TN 187
E + LF G + + +G+++A+D+ I A ++A I LP G D+ V N
Sbjct: 425 ETV-LF----SGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRN 479
Query: 188 -----------------------------AVDAQSERIVQAAMVKLVTNQTVVIVANCLI 218
+VD +E+ + + + T I+ +
Sbjct: 480 FSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIP 539
Query: 219 TIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQEGAKEAQD 266
T AD I+++ +GK+ GTH EL+E + Y ++ Q G D
Sbjct: 540 TALLADKILVLHEGKVAGFGTHKELLEHCK-PYREIYESQFGNGVMND 586
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 3e-06
Identities = 29/138 (21%), Positives = 53/138 (38%), Gaps = 37/138 (26%)
Query: 427 FIGSKLVEHGDATFGEVFKFLS-------EFGCFWCLESTAVAPNADKAKGSAASIFEIL 479
+ G LV + G + + + + + +A SA + E+L
Sbjct: 266 WFGGVLVRNNQMEIGSIMAYTNYLMQIMFSL-----MMIGNILNFIVRASASAKRVLEVL 320
Query: 480 ESKPKIDWSSKDGMTPSTVRGDIVFEH------------------------TVALVGENG 515
KP I+ + + + V G + FE+ VA++GE G
Sbjct: 321 NEKPAIE-EADNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETG 379
Query: 516 NGKSTVISLAERFHNPEQ 533
+GKST+++L R +PE+
Sbjct: 380 SGKSTLMNLIPRLIDPER 397
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 73.0 bits (178), Expect = 2e-13
Identities = 97/568 (17%), Positives = 173/568 (30%), Gaps = 154/568 (27%)
Query: 41 LEPLEDMPLGQTSLNVNAFAAGQAAACKMFETIERIPKIN-----PYDN--RFLQHVPSG 93
+ P++ Q S+ + + +++ + K N PY + L +
Sbjct: 95 MSPIKTEQR-QPSMMTRMYIEQRD---RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA 150
Query: 94 TTVALVGQSGSGKSTVINLVESFRFYAPEAEQEKIGLVSKEPIFLFCDFNEGQYIPYGKQ 153
V + G GSGK+ V V K+ IF ++
Sbjct: 151 KNVLIDGVLGSGKTWVALDV---------CLSYKVQCKMDFKIF---------WLNLKNC 192
Query: 154 NASDEHIRPAVQL-ANAEKSIDKLPLGLDTV-VATNAVDAQSERIVQAAMVK--L----- 204
N+ + + +L + + + + +++ A+ R++++ + L
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252
Query: 205 VTNQTVVIVAN--C--LITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQEG 260
V N N C L+T R +S TH L L
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLS----AATTTHISLDHHSMT-------LTPD 301
Query: 261 -AKEAQDKSLGVK------HILRGFPGPIGVYETAERSEDRIEKDPTEIEKRKKVSVTRL 313
K K L + +L P + + AE D + K V+ +L
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSII--AESIRD----GLATWDNWKHVNCDKL 355
Query: 314 AYANRSEV----PILLIGSIAAVIVFPIFGLLLSTSINIGAVGARLST-----DASAVRS 364
S + P + VFP S +I LS S V
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFP-------PSAHIPT--ILLSLIWFDVIKSDVMV 406
Query: 365 VVGDAL---GLIIQNIATIAAGLVIAFTAWKLAFITLAVPSLTIAEGYLKKKKNYERLH- 420
VV + L L+ + K + I++ PS+ + K +N LH
Sbjct: 407 VV-NKLHKYSLVEKQ--------------PKESTISI--PSIYLE--LKVKLENEYALHR 447
Query: 421 --INA--------------------FCFFIG--SKLVEHGD--ATFGEV---FKFLSEFG 451
++ F IG K +EH + F V F+FL +
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ-- 505
Query: 452 CFWCLESTAVAPNADKAKGSAASIFEILES-KPKIDWSSKDGMTPSTVRGDIVFEHTVAL 510
+ + A N A GS + + L+ KP I + + I +
Sbjct: 506 ---KIRHDSTAWN---ASGSILNTLQQLKFYKPYI---CDNDPKYERLVNAI--LDFLPK 554
Query: 511 VGENG-NGKST-VISLAERFHNPEQVIY 536
+ EN K T ++ +A ++ I+
Sbjct: 555 IEENLICSKYTDLLRIA--LMAEDEAIF 580
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 2e-11
Identities = 34/238 (14%), Positives = 74/238 (31%), Gaps = 65/238 (27%)
Query: 89 HVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAE----------------QEKIGLVS 132
+ G V L+G++GSGKST+++ R E E ++ G++
Sbjct: 43 SISPGQRVGLLGRTGSGKSTLLSAF--LRLLNTEGEIQIDGVSWDSITLEQWRKAFGVIP 100
Query: 133 KEPIFLFCD---FN---EGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV-- 184
++ +F N + SD+ I I++ P LD V+
Sbjct: 101 QKVF-IFSGTFRKNLDPNAAH--------SDQEIWKVADEVGLRSVIEQFPGKLDFVLVD 151
Query: 185 ------------------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVA 214
+ +D + +I++ + + + TV++
Sbjct: 152 GGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCE 211
Query: 215 NCLITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQEGAKEAQDKSLGVK 272
+ + D +++ + K+ + + EL P + K
Sbjct: 212 ARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVAGFIGSPKMNFLPVKVTATA 269
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 5e-09
Identities = 37/224 (16%), Positives = 81/224 (36%), Gaps = 58/224 (25%)
Query: 89 HVPSGTTVALVGQSGSGKSTVINLV--ESFRFYAPEAEQEKIGLVSKEP-IF-------- 137
+ G +A+ G +G+GK++++ ++ E +I S+ I
Sbjct: 60 KIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPGTIKENI 119
Query: 138 LFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVVA---TN------- 187
+ ++E +Y I+ A QL E+ I K + V+
Sbjct: 120 IGVSYDEYRY---------RSVIK-ACQL---EEDISKFAEKDNIVLGEGGITLSGGQRA 166
Query: 188 ----------------------AVDAQSER-IVQAAMVKLVTNQTVVIVANCLITIRNAD 224
+D +E+ I ++ + KL+ N+T ++V + + ++ AD
Sbjct: 167 RISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKAD 226
Query: 225 CIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQEGAKEAQDKS 268
I+++ +G GT EL +S + + + +
Sbjct: 227 KILILHEGSSYFYGTFSELQNL-RPDFSSKLMGCDSFDQFSAER 269
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 1e-05
Identities = 33/181 (18%), Positives = 60/181 (33%), Gaps = 54/181 (29%)
Query: 456 LESTAVAPNADKAKGSAASIFEILESKPKIDWSSKDGMTPSTVRGDIVFE----HTVALV 511
E + + + S G ++ DI F+ +A+
Sbjct: 14 WEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLG--TPVLK-DINFKIERGQLLAVA 70
Query: 512 GENGNGKSTVIS--LAERFHNPEQVI----------YSWI-------------------- 539
G G GK++++ + E + ++ SWI
Sbjct: 71 GSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPGTIKENIIGVSYDEYRYR 130
Query: 540 -IIKCTNF---IASLPQGSDLNVGERGLQLSGGLKQRIARTRARNYCGCGSPPYHYKNAD 595
+IK I+ + ++ +GE G+ LSGG + RI+ RA YK+AD
Sbjct: 131 SVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAV-----------YKDAD 179
Query: 596 I 596
+
Sbjct: 180 L 180
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 5e-07
Identities = 38/211 (18%), Positives = 80/211 (37%), Gaps = 59/211 (27%)
Query: 89 HVPSGTTVALVGQSGSGKSTVINLV--ESFRFYAPEAEQEKIGLVSKEP-IF-------- 137
+ G +A+ G +G+GK++++ ++ E +I S+ I
Sbjct: 30 KIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPGTIKENI 89
Query: 138 LF-CDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVVA----------- 185
+F ++E +Y + A QL E+ I K + V+
Sbjct: 90 IFGVSYDEYRY----------RSVIKACQL---EEDISKFAEKDNIVLGEGGITLSGGQR 136
Query: 186 ----------TNA-----------VDAQSER-IVQAAMVKLVTNQTVVIVANCLITIRNA 223
+A +D +E+ I ++ + KL+ N+T ++V + + ++ A
Sbjct: 137 ARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKA 196
Query: 224 DCIIMVSKGKIVEKGTHDELIEDPEGAYSQL 254
D I+++ +G GT EL + +S
Sbjct: 197 DKILILHEGSSYFYGTFSELQNL-QPDFSSK 226
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 7e-06
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 11/50 (22%)
Query: 547 IASLPQGSDLNVGERGLQLSGGLKQRIARTRARNYCGCGSPPYHYKNADI 596
I+ + ++ +GE G+ LSGG + RI+ RA YK+AD+
Sbjct: 113 ISKFAEKDNIVLGEGGITLSGGQRARISLARAV-----------YKDADL 151
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 2e-06
Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 207 NQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQEGAKEAQD 266
N+T ++V + + + D II++S GKI E G++ EL+ +GA+++ +R +
Sbjct: 179 NKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR-DGAFAEFLR-TYASHHHHH 236
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 2e-05
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 11/50 (22%)
Query: 547 IASLPQGSDLNVGERGLQLSGGLKQRIARTRARNYCGCGSPPYHYKNADI 596
+ LP G +GE+G+ LSGG KQR++ RA Y NADI
Sbjct: 110 LEILPSGDRTEIGEKGVNLSGGQKQRVSLARAV-----------YSNADI 148
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 632 | |||
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.98 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.96 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 99.96 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.96 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 99.96 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 99.95 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 99.94 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 99.94 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 99.93 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 99.93 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 99.93 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 99.92 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 99.92 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 99.92 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 99.92 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 99.92 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 99.92 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 99.92 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 99.92 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 99.92 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 99.92 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 99.92 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 99.91 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 99.91 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 99.91 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 99.91 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 99.91 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 99.91 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 99.91 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 99.91 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 99.91 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 99.91 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 99.91 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 99.91 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 99.91 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 99.9 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 99.9 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.9 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 99.9 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 99.9 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 99.9 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 99.9 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 99.9 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 99.89 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 99.89 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 99.89 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 99.88 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 99.87 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 99.86 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.85 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 99.84 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 99.83 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 99.83 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 99.82 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 99.82 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.81 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.81 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 99.8 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 99.8 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 99.8 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 99.8 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 99.79 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 99.79 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 99.79 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 99.79 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 99.79 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.78 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 99.78 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 99.78 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 99.78 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 99.78 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 99.77 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 99.77 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 99.77 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 99.77 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 99.77 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.76 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 99.75 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 99.75 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.74 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 99.74 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 99.74 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 99.74 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.74 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.74 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 99.73 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.72 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 99.72 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.7 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.68 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.6 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.59 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.58 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 99.56 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.54 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.52 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.47 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.46 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.41 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.37 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.36 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.31 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.27 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.25 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.2 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.18 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.18 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.16 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.14 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.14 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.13 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.12 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.11 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.1 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.05 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.03 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.01 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 98.98 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 98.97 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 98.97 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 98.95 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 98.93 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 98.92 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 98.92 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 98.91 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 98.86 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 98.82 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 98.78 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 98.76 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 98.76 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 98.72 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 98.72 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 98.72 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 98.71 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 98.68 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 98.67 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 98.67 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 98.67 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 98.65 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 98.64 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 98.64 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 98.64 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 98.63 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 98.63 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 98.58 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 98.58 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 98.57 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 98.56 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 98.53 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 98.49 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 98.44 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 98.42 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 98.4 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 98.39 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.37 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 98.37 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 98.36 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.35 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 98.33 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 98.29 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 98.27 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 98.25 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 98.23 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 98.21 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 98.21 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.17 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 98.13 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.12 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 98.1 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 98.09 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 98.08 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 98.08 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 98.07 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 98.06 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 98.06 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 98.04 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 98.03 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 98.03 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 98.02 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 98.0 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 97.99 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 97.97 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 97.93 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 97.9 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 97.89 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 97.86 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 97.85 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 97.85 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 97.85 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 97.83 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.8 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 97.79 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 97.78 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 97.77 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 97.75 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 97.74 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.73 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 97.71 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 97.69 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 97.68 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 97.68 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 97.66 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 97.65 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 97.65 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 97.65 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.64 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 97.62 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.6 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 97.58 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 97.54 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 97.53 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.51 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 97.5 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.5 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 97.5 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 97.48 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 97.44 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 97.43 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 97.43 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 97.42 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 97.42 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.39 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 97.35 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 97.35 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 97.32 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.31 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 97.3 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 97.27 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 97.27 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.27 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 97.26 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.26 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.26 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 97.24 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 97.23 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.19 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.19 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 97.18 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 97.18 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 97.17 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 97.15 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 97.15 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 97.14 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.1 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 97.09 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.09 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 97.08 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 97.08 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 97.07 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 97.04 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 97.03 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 97.03 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 97.01 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 97.01 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 96.98 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 96.98 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 96.95 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 96.92 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 96.91 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 96.91 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 96.9 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 96.9 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 96.88 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 96.88 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 96.87 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 96.87 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 96.84 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 96.83 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 96.8 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 96.78 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 96.75 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 96.75 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 96.75 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 96.74 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 96.7 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 96.69 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 96.68 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 96.67 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 96.66 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 96.66 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 96.65 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 96.65 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 96.65 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 96.62 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 96.6 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 96.6 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 96.6 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 96.57 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 96.57 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 96.55 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 96.55 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 96.53 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 96.53 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 96.52 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 96.51 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 96.45 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 96.45 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 96.44 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 96.42 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 96.42 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 96.41 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 96.38 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 96.34 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 96.31 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 96.3 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 96.29 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 96.27 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 96.27 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 96.27 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 96.23 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 96.22 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 96.22 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.21 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.18 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 96.15 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.15 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 96.14 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 96.12 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 96.12 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 96.11 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 96.1 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 96.09 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 96.09 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 96.09 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 96.05 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 96.04 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 96.04 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 95.98 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 95.97 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 95.96 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.93 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 95.92 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 95.92 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 95.91 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 95.89 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 95.89 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 95.87 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 95.85 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 95.84 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 95.83 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 95.82 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 95.82 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 95.79 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 95.78 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.77 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 95.77 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 95.76 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 95.73 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 95.73 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 95.72 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 95.7 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 95.7 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 95.69 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 95.67 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 95.64 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 95.64 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 95.64 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 95.63 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 95.63 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 95.62 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 95.59 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 95.55 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 95.55 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 95.54 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 95.52 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 95.51 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 95.5 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 95.48 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 95.47 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 95.47 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 95.47 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 95.47 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 95.45 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 95.44 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 95.44 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 95.44 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 95.43 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 95.41 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 95.41 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 95.38 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 95.38 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 95.37 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 95.36 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 95.35 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 95.35 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 95.34 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 95.34 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 95.34 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 95.33 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 95.33 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 95.3 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 95.29 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 95.29 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 95.29 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 95.28 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 95.27 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 95.26 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 95.25 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 95.25 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 95.25 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 95.24 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 95.22 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 95.19 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 95.18 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 95.17 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 95.16 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 95.16 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 95.15 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 95.15 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 95.14 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 95.12 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 95.12 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 95.11 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 95.11 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 95.11 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 95.09 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 95.09 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 95.08 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 95.08 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 95.08 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 95.07 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 95.06 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 95.05 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 95.05 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 95.02 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 94.99 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 94.97 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 94.96 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 94.94 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 94.93 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 94.93 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 94.93 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 94.92 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 94.92 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 94.91 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 94.9 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 94.9 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 94.9 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 94.9 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 94.89 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 94.88 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 94.88 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 94.86 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 94.86 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 94.85 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 94.84 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 94.84 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 94.84 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 94.83 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 94.81 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 94.8 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 94.8 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 94.8 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 94.79 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 94.79 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 94.77 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 94.77 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 94.75 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 94.75 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 94.73 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 94.73 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 94.72 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 94.72 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 94.71 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 94.71 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 94.69 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 94.68 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 94.68 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 94.67 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 94.67 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 94.64 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 94.63 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 94.63 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 94.63 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 94.62 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 94.61 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 94.61 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 94.58 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 94.58 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 94.57 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 94.56 |
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-91 Score=842.03 Aligned_cols=623 Identities=32% Similarity=0.468 Sum_probs=456.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------------------------------------
Q 047286 2 AACLPAIVIAGGITATVVAKLSCRGQIAYAEAEMLLSTQLEP-------------------------------------- 43 (632)
Q Consensus 2 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-------------------------------------- 43 (632)
++++|+++++..++.+.+++..++.++..++.++.++|.+.|
T Consensus 243 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (1321)
T 4f4c_A 243 LAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYELERYSTAVEEAKKAGVLKGLFLGIS 322 (1321)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999943
Q ss_pred ------------------------CCcccHHH-----------------HHHHHHHHHHHHHHHHHHHHHhccCCCCCCC
Q 047286 44 ------------------------LEDMPLGQ-----------------TSLNVNAFAAGQAAACKMFETIERIPKINPY 82 (632)
Q Consensus 44 ------------------------~~~~~~~~-----------------~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~ 82 (632)
.+.+++|. +.+.+..++++.+|++|+++++|.+|+++..
T Consensus 323 ~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~ 402 (1321)
T 4f4c_A 323 FGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVIDSS 402 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCSSCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccc
Confidence 23344443 3456778999999999999999987653210
Q ss_pred C-------------------------------CcEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCc----------
Q 047286 83 D-------------------------------NRFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAP---------- 121 (632)
Q Consensus 83 ~-------------------------------~~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~---------- 121 (632)
. +++||+|++|+++|||||||||||||+++|. ++|+|
T Consensus 403 ~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~--~~~~~~~G~I~idG~ 480 (1321)
T 4f4c_A 403 SKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLL--RYYDVLKGKITIDGV 480 (1321)
T ss_dssp SSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHT--TSSCCSEEEEEETTE
T ss_pred ccccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhc--cccccccCcccCCCc
Confidence 0 0199999999999999999999999999998 55544
Q ss_pred -------HHhhcceEEEcccCcccccccccccccccCCCCCCHHHHHHHHHHccchhhHhhCCccccccc----------
Q 047286 122 -------EAEQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV---------- 184 (632)
Q Consensus 122 -------~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~~~v---------- 184 (632)
..+|++|+||+|+|++|++|+++ ||.+|.++.+++++.++++.+++++++..||+|++|.|
T Consensus 481 ~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~e--NI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGG 558 (1321)
T 4f4c_A 481 DVRDINLEFLRKNVAVVSQEPALFNCTIEE--NISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGG 558 (1321)
T ss_dssp ETTTSCHHHHHHHEEEECSSCCCCSEEHHH--HHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHH
T ss_pred cchhccHHHHhhcccccCCcceeeCCchhH--HHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHH
Confidence 34788999999999999999999 79999988999999999999999999999999999988
Q ss_pred ----------------------ccCCCCHHHHHHHHHHHHHHhCCceEEEEecCchHHhhcCeEEEEeCCeEEEecChhH
Q 047286 185 ----------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDE 242 (632)
Q Consensus 185 ----------------------~ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~e 242 (632)
+||+||+++++.++++|.++.+++|+|+|||+++.++.||+|++|++|+|+++|+|+|
T Consensus 559 QkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~~aD~Iivl~~G~ive~Gth~e 638 (1321)
T 4f4c_A 559 QKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRA 638 (1321)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTTTCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHHhCCEEEEeeCCeeeccCCHHH
Confidence 2999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCcHHHHHHHHHhhhhhhhcccc---ccccc------c-cCCCCC----CC---cccc---cc----cccccccC-
Q 047286 243 LIEDPEGAYSQLVRLQEGAKEAQDKSL---GVKHI------L-RGFPGP----IG---VYET---AE----RSEDRIEK- 297 (632)
Q Consensus 243 l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~------~-~~~~~~----~~---~~~~---~~----~~~~~~~~- 297 (632)
|++. ++.|.++++.|......+.... ..... . ...... .. .... .. ...+..+.
T Consensus 639 L~~~-~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (1321)
T 4f4c_A 639 LMAQ-QGLYYDLVTAQTFTDAVDSAAEGKFSRENSVARQTSEHEGLSRQASEMDDIMNRVRSSTIGSITNGPVIDEKEER 717 (1321)
T ss_dssp HHTT-TCHHHHHHHHHHHHHHHHHHHCC--------------------------------------------------CC
T ss_pred HHHh-hhHHHHHHHhhhcccccccccccccccccccccccccccccccccccccchhhhhhccccccccCCcchhHHHhh
Confidence 9987 7899999887754322111000 00000 0 000000 00 0000 00 00000000
Q ss_pred ---Cch---hH----hhhhhHHHHHHHhhccchhHHHHHHHHHHHH---HHHHHHHHhh---------------------
Q 047286 298 ---DPT---EI----EKRKKVSVTRLAYANRSEVPILLIGSIAAVI---VFPIFGLLLS--------------------- 343 (632)
Q Consensus 298 ---~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i---~~p~~~~~~~--------------------- 343 (632)
+.. .. .......+++++++.+++++.++++++++.+ ++|.+.+++.
T Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (1321)
T 4f4c_A 718 IGKDALSRLKQELEENNAQKTNLFEILYHARPHALSLFIGMSTATIGGFIYPTYSVFFTSFMNVFAGNPADFLSQGHFWA 797 (1321)
T ss_dssp CCCCHHHHHHHTTTTSCCCCCCHHHHHHHTGGGHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHTSSCSSTTTTTHHHHH
T ss_pred ccchhHHHHHHHHHHcCCcceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHH
Confidence 000 00 0111224566667777777766665554432 1111110000
Q ss_pred --------------------------------------h------------hcchhhHHHHHhhhHHHHHHHHHHHHHHH
Q 047286 344 --------------------------------------T------------SINIGAVGARLSTDASAVRSVVGDALGLI 373 (632)
Q Consensus 344 --------------------------------------~------------~~~~G~l~srls~D~~~i~~~~~~~~~~~ 373 (632)
. -.+.|++++|+++|++.++..++..+..+
T Consensus 798 ~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~ 877 (1321)
T 4f4c_A 798 LMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTV 877 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHHHHTTTSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhccCCCChHHHHhcchhhHHHHHHHHHHHHHHH
Confidence 0 01249999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhH---------------------------------------
Q 047286 374 IQNIATIAAGLVIAFTA-WKLAFITLAVPSLTIAEGYLKKK--------------------------------------- 413 (632)
Q Consensus 374 ~~~~~~~~~~~v~~~~~-~~l~lv~l~~~~l~~~~~~~~~~--------------------------------------- 413 (632)
+..++.++++++++++. |.+++++++++|+++...++..+
T Consensus 878 ~~~~~~~i~~~~~~~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~ 957 (1321)
T 4f4c_A 878 ITTLVSMVAGIGLAFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAREDTF 957 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTHHHH
T ss_pred HHHhhhHHHHeeeehHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccchHHH
Confidence 99999999999888888 99999999888887665543211
Q ss_pred -HHHHHH---------------------------HHHHHHHhhhhHHhhcCCcCHHHHHHH--HHHHH--HHHHHHHHhH
Q 047286 414 -KNYERL---------------------------HINAFCFFIGSKLVEHGDATFGEVFKF--LSEFG--CFWCLESTAV 461 (632)
Q Consensus 414 -~~~~~~---------------------------~~~~~~~~~g~~~v~~g~~s~~~~~~~--~~~~~--~~~~~~~~~~ 461 (632)
+.+.+. ...++++|+|..++..+..+++.+..+ +.... ...+......
T Consensus 958 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 1037 (1321)
T 4f4c_A 958 YENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSY 1037 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 122345678888888887776544333 22111 1123344556
Q ss_pred HhHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCcccccEEEee-------------------------EEEEEecCCC
Q 047286 462 APNADKAKGSAASIFEILESKPKIDWSSKDGMTPSTVRGDIVFEH-------------------------TVALVGENGN 516 (632)
Q Consensus 462 ~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~f~~-------------------------~vaIVG~SGs 516 (632)
.+++..+..+++|++++++.+++.+..... ....+..|+|+|+| +|||||||||
T Consensus 1038 ~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~-~~~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGs 1116 (1321)
T 4f4c_A 1038 FPEYAKATFAGGIIFGMLRKISKIDSLSLA-GEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGC 1116 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCSSCTTCCC-SBCCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTS
T ss_pred HHHHHHHHHHHHHHHHHhhCcccCCCccCC-CCCCCCCCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCC
Confidence 678888999999999999988776533221 22234456777776 7999999999
Q ss_pred ChHHHHHhhhcCCChhh-----------------------------------------------------hcHHHHHHHH
Q 047286 517 GKSTVISLAERFHNPEQ-----------------------------------------------------VIYSWIIIKC 543 (632)
Q Consensus 517 GKSTL~~ll~r~y~~~~-----------------------------------------------------~~~~~~~~~~ 543 (632)
|||||+++|+|||+|++ ++.+....++
T Consensus 1117 GKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l 1196 (1321)
T 4f4c_A 1117 GKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANI 1196 (1321)
T ss_dssp STTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTC
T ss_pred hHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCC
Confidence 99999999999999843 2223334478
Q ss_pred HHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh-----------------------------------hccccch
Q 047286 544 TNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY-----------------------------------CGCGSPP 588 (632)
Q Consensus 544 ~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~-----------------------------------~~iahrl 588 (632)
+|||.+||+||||.|||+|.+||||||||||||||+++ |+|||||
T Consensus 1197 ~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRL 1276 (1321)
T 4f4c_A 1197 HNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRL 1276 (1321)
T ss_dssp HHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSS
T ss_pred hHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCH
Confidence 89999999999999999999999999999999999877 8999999
Q ss_pred hhhhcCCEEEEEeCCeEeeecChHHHhccCCchhHHHHHhhhc
Q 047286 589 YHYKNADITSVVKNGVIAEKGRHDALMKITDGTYASLTALHMS 631 (632)
Q Consensus 589 ~~~~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~~~~~~ 631 (632)
+|+++||+|+|||+|+|+|+|||+||+++ +|.|++||+.|..
T Consensus 1277 sTi~~aD~I~Vld~G~IvE~Gth~eLl~~-~g~y~~L~~~Q~~ 1318 (1321)
T 4f4c_A 1277 NTVMNADCIAVVSNGTIIEKGTHTQLMSE-KGAYYKLTQKQMT 1318 (1321)
T ss_dssp STTTTCSEEEEESSSSEEEEECHHHHHHC-C------------
T ss_pred HHHHhCCEEEEEECCEEEEECCHHHHHhC-CcHHHHHHHHHHh
Confidence 99999999999999999999999999997 9999999999864
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-78 Score=729.81 Aligned_cols=624 Identities=34% Similarity=0.513 Sum_probs=446.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------------------------------------
Q 047286 2 AACLPAIVIAGGITATVVAKLSCRGQIAYAEAEMLLSTQLEP-------------------------------------- 43 (632)
Q Consensus 2 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-------------------------------------- 43 (632)
++++|+++++..++.+.+++..++.+++.+++++.++|++.|
T Consensus 215 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (1284)
T 3g5u_A 215 LAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANIS 294 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSHHHHHHHHHHHHHHHHHTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999999954
Q ss_pred ------------------------CCcc-----------------cHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC-
Q 047286 44 ------------------------LEDM-----------------PLGQTSLNVNAFAAGQAAACKMFETIERIPKINP- 81 (632)
Q Consensus 44 ------------------------~~~~-----------------~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~- 81 (632)
.+.+ +++++.+.+..++++.+|++|++++++.++++++
T Consensus 295 ~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~ 374 (1284)
T 3g5u_A 295 MGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSF 374 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcc
Confidence 1112 2233345567889999999999999987664321
Q ss_pred ----------------------CC--------CcEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCc----------
Q 047286 82 ----------------------YD--------NRFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAP---------- 121 (632)
Q Consensus 82 ----------------------~~--------~~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~---------- 121 (632)
+. +++||+|++||+++|+||||||||||+++|.| +++|
T Consensus 375 ~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g--~~~~~~G~i~i~g~ 452 (1284)
T 3g5u_A 375 SKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQR--LYDPLDGMVSIDGQ 452 (1284)
T ss_dssp CSSCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTT--SSCCSEEEEEETTE
T ss_pred cccCCCCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhC--CCCCCCeEEEECCE
Confidence 00 01999999999999999999999999999984 4433
Q ss_pred -------HHhhcceEEEcccCcccccccccccccccCCCCCCHHHHHHHHHHccchhhHhhCCccccccc----------
Q 047286 122 -------EAEQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV---------- 184 (632)
Q Consensus 122 -------~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~~~v---------- 184 (632)
..+|+++|||+|+|++|.+++.+ |+.++.++.+++++.++++.+++++++..+|.|++|.+
T Consensus 453 ~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~e--Ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG 530 (1284)
T 3g5u_A 453 DIRTINVRYLREIIGVVSQEPVLFATTIAE--NIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGG 530 (1284)
T ss_dssp EGGGSCHHHHHHHEEEECSSCCCCSSCHHH--HHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHH
T ss_pred EHHhCCHHHHHhheEEEcCCCccCCccHHH--HHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHH
Confidence 34678899999999999998887 79988877889999999999999999999999988766
Q ss_pred ----------------------ccCCCCHHHHHHHHHHHHHHhCCceEEEEecCchHHhhcCeEEEEeCCeEEEecChhH
Q 047286 185 ----------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDE 242 (632)
Q Consensus 185 ----------------------~ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~e 242 (632)
+||+||+++++.+++.+++..+++|+|+|||+++.+..||+|++|++|+|+++|+|+|
T Consensus 531 q~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~~d~i~vl~~G~i~~~g~~~~ 610 (1284)
T 3g5u_A 531 QKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDE 610 (1284)
T ss_dssp HHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTTCSEEEECSSSCCCCEECHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHH
Confidence 3999999999999999998888999999999999999999999999999999999999
Q ss_pred HhcCCCcHHHHHHHHHhhhhhhhccccc--cccccc--CCC---CCCC----cccccccccccc-cCCchh----Hhhhh
Q 047286 243 LIEDPEGAYSQLVRLQEGAKEAQDKSLG--VKHILR--GFP---GPIG----VYETAERSEDRI-EKDPTE----IEKRK 306 (632)
Q Consensus 243 l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~---~~~~----~~~~~~~~~~~~-~~~~~~----~~~~~ 306 (632)
+++. ++.|.+++..+....+....... ...... ... .... .........+.. ..+... .+...
T Consensus 611 l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (1284)
T 3g5u_A 611 LMRE-KGIYFKLVMTQTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRKSICGPHDQDRKLSTKEALDEDVP 689 (1284)
T ss_dssp HHHT-TSHHHHHHHHTC---------------------------------------------------------CCCCCS
T ss_pred HHhC-CCHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhcccc
Confidence 9987 67788777654322111000000 000000 000 0000 000000000000 000000 00000
Q ss_pred hHHHHHHHhhccchhHHHHHHHHHHHH---HHHHHH--------------------------------------------
Q 047286 307 KVSVTRLAYANRSEVPILLIGSIAAVI---VFPIFG-------------------------------------------- 339 (632)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~i---~~p~~~-------------------------------------------- 339 (632)
...+++++.+.+++|+.++++++++++ +.|.+.
T Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~ 769 (1284)
T 3g5u_A 690 PASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQ 769 (1284)
T ss_dssp CCCTTHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111223333333333222222221111 000000
Q ss_pred -HHh----------------hh------------hcchhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047286 340 -LLL----------------ST------------SINIGAVGARLSTDASAVRSVVGDALGLIIQNIATIAAGLVIAFTA 390 (632)
Q Consensus 340 -~~~----------------~~------------~~~~G~l~srls~D~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 390 (632)
+++ .. ....|++++|+++|++.++..++..+..++..++.+++++++++..
T Consensus 770 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~ 849 (1284)
T 3g5u_A 770 GFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIY 849 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 00 1235999999999999999999999999999999998888888877
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHhHH----------------------------------------HHHH-----------
Q 047286 391 -WKLAFITLAVPSLTIAEGYLKKKK----------------------------------------NYER----------- 418 (632)
Q Consensus 391 -~~l~lv~l~~~~l~~~~~~~~~~~----------------------------------------~~~~----------- 418 (632)
|++++++++++|+++...++..+. .+.+
T Consensus 850 ~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~~~~ 929 (1284)
T 3g5u_A 850 GWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMK 929 (1284)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988888876654332110 0000
Q ss_pred ----------------HHHHHHHHhhhhHHhhcCCcCHHHHHHHHHHH--HHHHHHHHHhHHhHHHHHHHHHHHHHHHHc
Q 047286 419 ----------------LHINAFCFFIGSKLVEHGDATFGEVFKFLSEF--GCFWCLESTAVAPNADKAKGSAASIFEILE 480 (632)
Q Consensus 419 ----------------~~~~~~~~~~g~~~v~~g~~s~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~ 480 (632)
....+.++|+|+.++..|.++++.++.++... ....+.......+.+.++..+++|++++++
T Consensus 930 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~ 1009 (1284)
T 3g5u_A 930 KAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIE 1009 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 01234567889999999999999888776332 223355556666677888999999999999
Q ss_pred cCCCCCCCCCCCCCCCcccccEEEe-------------------------eEEEEEecCCCChHHHHHhhhcCCChhh--
Q 047286 481 SKPKIDWSSKDGMTPSTVRGDIVFE-------------------------HTVALVGENGNGKSTVISLAERFHNPEQ-- 533 (632)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~g~I~f~-------------------------~~vaIVG~SGsGKSTL~~ll~r~y~~~~-- 533 (632)
.+|+.+........+....|.|+|+ +++|||||||||||||+++|+|+|+|++
T Consensus 1010 ~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~ 1089 (1284)
T 3g5u_A 1010 KTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGS 1089 (1284)
T ss_dssp SCCSSSSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEE
T ss_pred CCCcccccccccccccCCCCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCE
Confidence 8776543211111112223444443 3899999999999999999999999843
Q ss_pred ---------------------------------------------------hcHHHHHHHHHHHHhcCCCccCcccccCC
Q 047286 534 ---------------------------------------------------VIYSWIIIKCTNFIASLPQGSDLNVGERG 562 (632)
Q Consensus 534 ---------------------------------------------------~~~~~~~~~~~~~i~~lp~g~dt~vge~G 562 (632)
++.+....++++|+.++|+||||.|||+|
T Consensus 1090 I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G 1169 (1284)
T 3g5u_A 1090 VFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKG 1169 (1284)
T ss_dssp EESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTS
T ss_pred EEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCC
Confidence 01111123678999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHhh-----------------------------------hccccchhhhhcCCEEEEEeCCeEee
Q 047286 563 LQLSGGLKQRIARTRARNY-----------------------------------CGCGSPPYHYKNADITSVVKNGVIAE 607 (632)
Q Consensus 563 ~~LSgGQrQRiaiARA~~~-----------------------------------~~iahrl~~~~~aD~I~vl~~G~ive 607 (632)
.+||||||||+|||||+++ ++||||++++++||+|+||++|+|+|
T Consensus 1170 ~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~~dri~vl~~G~i~~ 1249 (1284)
T 3g5u_A 1170 TQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKE 1249 (1284)
T ss_dssp CSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGSCSEEEEEETBEEEE
T ss_pred CccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHcCCEEEEEECCEEEE
Confidence 9999999999999999766 78999999999999999999999999
Q ss_pred ecChHHHhccCCchhHHHHHhhhc
Q 047286 608 KGRHDALMKITDGTYASLTALHMS 631 (632)
Q Consensus 608 ~G~h~eL~~~~~g~y~~l~~~~~~ 631 (632)
+|+|+||+++ +|.|++|++.|..
T Consensus 1250 ~g~~~~l~~~-~g~y~~l~~~q~~ 1272 (1284)
T 3g5u_A 1250 HGTHQQLLAQ-KGIYFSMVSVQAG 1272 (1284)
T ss_dssp EECHHHHHHS-CSHHHHHHHHHC-
T ss_pred ECCHHHHHhC-CCHHHHHHHHHhh
Confidence 9999999997 9999999998853
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-49 Score=475.23 Aligned_cols=281 Identities=35% Similarity=0.545 Sum_probs=232.0
Q ss_pred hhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhH--------------
Q 047286 349 GAVGARLSTDASAVRSVVGDALGLIIQNIATIAAGLVIAFTA-WKLAFITLAVPSLTIAEGYLKKK-------------- 413 (632)
Q Consensus 349 G~l~srls~D~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~l~lv~l~~~~l~~~~~~~~~~-------------- 413 (632)
|++++|+++|++.+++.+...+..++..++.++++++++++. |++++++++++|+++...++..+
T Consensus 193 G~l~sr~~~D~~~i~~~~~~~l~~~~~~~~~~i~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (1321)
T 4f4c_A 193 GTLATKLFDNLERVKEGTGDKIGMAFQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYA 272 (1321)
T ss_dssp TTHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988 99999999888877654422111
Q ss_pred --------------------------HHHHHH---------------------------HHHHHHHhhhhHHhhcCCcCH
Q 047286 414 --------------------------KNYERL---------------------------HINAFCFFIGSKLVEHGDATF 440 (632)
Q Consensus 414 --------------------------~~~~~~---------------------------~~~~~~~~~g~~~v~~g~~s~ 440 (632)
+.+.+. ...++++|+|+.++..|.+++
T Consensus 273 ~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~ 352 (1321)
T 4f4c_A 273 KAGKVVEETISSIRTVVSLNGLRYELERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNF 352 (1321)
T ss_dssp HHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCH
T ss_pred HHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcH
Confidence 000000 123456889999999999999
Q ss_pred HHHHHHHHHH--HHHHHHHHHhHHhHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCcccccEEEee------------
Q 047286 441 GEVFKFLSEF--GCFWCLESTAVAPNADKAKGSAASIFEILESKPKIDWSSKDGMTPSTVRGDIVFEH------------ 506 (632)
Q Consensus 441 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~f~~------------ 506 (632)
|.+++++... ...++.........+..+..+++|++++++.+|+.+.+......+.+.+|+|+|+|
T Consensus 353 g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~ 432 (1321)
T 4f4c_A 353 GDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVP 432 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccccccCCCCCCcEEEEEeeeeCCCCCCCc
Confidence 9999887433 33456667777788899999999999999998876544333333344567777776
Q ss_pred -------------EEEEEecCCCChHHHHHhhhcCCChhh----------------------------------------
Q 047286 507 -------------TVALVGENGNGKSTVISLAERFHNPEQ---------------------------------------- 533 (632)
Q Consensus 507 -------------~vaIVG~SGsGKSTL~~ll~r~y~~~~---------------------------------------- 533 (632)
++|||||||||||||+++|.|+|+|++
T Consensus 433 vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI 512 (1321)
T 4f4c_A 433 ILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENI 512 (1321)
T ss_dssp SEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHH
T ss_pred eeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHH
Confidence 799999999999999999999999843
Q ss_pred -----------hcHHHHHHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh---------------------
Q 047286 534 -----------VIYSWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY--------------------- 581 (632)
Q Consensus 534 -----------~~~~~~~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~--------------------- 581 (632)
++.+....++++||..||+||||.|||+|.+||||||||||||||+++
T Consensus 513 ~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~ 592 (1321)
T 4f4c_A 513 SLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGI 592 (1321)
T ss_dssp HTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHH
T ss_pred hhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHH
Confidence 111222336789999999999999999999999999999999999766
Q ss_pred --------------hccccchhhhhcCCEEEEEeCCeEeeecChHHHhccCCchhHHHHHhhh
Q 047286 582 --------------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKITDGTYASLTALHM 630 (632)
Q Consensus 582 --------------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~~~~~ 630 (632)
|+||||++++++||+|+||++|+|+|+|||+||+++ +|.|++|++.|.
T Consensus 593 i~~~l~~~~~~~T~iiiaHrls~i~~aD~Iivl~~G~ive~Gth~eL~~~-~g~y~~l~~~q~ 654 (1321)
T 4f4c_A 593 VQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMAQ-QGLYYDLVTAQT 654 (1321)
T ss_dssp HHHHHHHHHTTSEEEEECSCTTTTTTCSEEEEEETTEEEEEECHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCEEEEEcccHHHHHhCCEEEEeeCCeeeccCCHHHHHHh-hhHHHHHHHhhh
Confidence 899999999999999999999999999999999997 999999998874
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-42 Score=389.76 Aligned_cols=282 Identities=25% Similarity=0.349 Sum_probs=218.9
Q ss_pred hhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhH------H------
Q 047286 348 IGAVGARLSTDASAVRSVVGDALGLIIQNIATIAAGLVIAFTA-WKLAFITLAVPSLTIAEGYLKKK------K------ 414 (632)
Q Consensus 348 ~G~l~srls~D~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~l~lv~l~~~~l~~~~~~~~~~------~------ 414 (632)
.|++++|+++|++.+++.+...+..++..++.+++++++++.. |+++++.+++.|+++...++..+ +
T Consensus 119 ~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (587)
T 3qf4_A 119 TSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQEST 198 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4999999999999999999999888888888888888888877 99988888777766543321111 0
Q ss_pred ----------------------------HHHHH---------------------------HHHHHHHhhhhHHhhcCCcC
Q 047286 415 ----------------------------NYERL---------------------------HINAFCFFIGSKLVEHGDAT 439 (632)
Q Consensus 415 ----------------------------~~~~~---------------------------~~~~~~~~~g~~~v~~g~~s 439 (632)
.+.+. ...+.++|+|+.++..|.++
T Consensus 199 ~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~lt 278 (587)
T 3qf4_A 199 DEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQME 278 (587)
T ss_dssp HHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcC
Confidence 00000 12234678899999999999
Q ss_pred HHHHHHHHHHHH--HHHHHHHHhHHhHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCcccccEEEee-----------
Q 047286 440 FGEVFKFLSEFG--CFWCLESTAVAPNADKAKGSAASIFEILESKPKIDWSSKDGMTPSTVRGDIVFEH----------- 506 (632)
Q Consensus 440 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~f~~----------- 506 (632)
+|.+++++.... ..++.........+.++..+.+|+.++++.+++.+.+.. ....++..|.|+|+|
T Consensus 279 ~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~-~~~~~~~~~~i~~~~v~~~y~~~~~~ 357 (587)
T 3qf4_A 279 IGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEADN-ALALPNVEGSVSFENVEFRYFENTDP 357 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCCTT-CBCCSCCCCCEEEEEEEECSSSSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCC-ccccCCCCCcEEEEEEEEEcCCCCCc
Confidence 999998874332 334555666677888899999999999988765432211 111112234444443
Q ss_pred -------------EEEEEecCCCChHHHHHhhhcCCChhh------------hc--------------------------
Q 047286 507 -------------TVALVGENGNGKSTVISLAERFHNPEQ------------VI-------------------------- 535 (632)
Q Consensus 507 -------------~vaIVG~SGsGKSTL~~ll~r~y~~~~------------~~-------------------------- 535 (632)
++|||||||||||||+++|.|+|+|++ +.
T Consensus 358 ~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni 437 (587)
T 3qf4_A 358 VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENL 437 (587)
T ss_dssp SEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHH
T ss_pred ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHH
Confidence 799999999999999999999999843 00
Q ss_pred -------------HHHHHHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh---------------------
Q 047286 536 -------------YSWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY--------------------- 581 (632)
Q Consensus 536 -------------~~~~~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~--------------------- 581 (632)
.+....++++++..+|+|+||.++|+|.+||||||||+|||||+++
T Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~ 517 (587)
T 3qf4_A 438 KWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKR 517 (587)
T ss_dssp TTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHH
T ss_pred hccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHH
Confidence 0111225679999999999999999999999999999999999765
Q ss_pred --------------hccccchhhhhcCCEEEEEeCCeEeeecChHHHhccCCchhHHHHHhhhc
Q 047286 582 --------------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKITDGTYASLTALHMS 631 (632)
Q Consensus 582 --------------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~~~~~~ 631 (632)
+++|||+++++.||+|+||++|+|+|+|+|+||+++ +|.|+++++.|.+
T Consensus 518 i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~el~~~-~~~~~~~~~~~~~ 580 (587)
T 3qf4_A 518 ILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEH-CKPYREIYESQFG 580 (587)
T ss_dssp HHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHHHHHH-CHHHHHHHHHHC-
T ss_pred HHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHHHHHhC-CcHHHHHHHHHhc
Confidence 789999999999999999999999999999999997 9999999998753
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-42 Score=387.13 Aligned_cols=280 Identities=28% Similarity=0.378 Sum_probs=220.2
Q ss_pred hhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhH----------H---
Q 047286 349 GAVGARLSTDASAVRSVVGDALGLIIQNIATIAAGLVIAFTA-WKLAFITLAVPSLTIAEGYLKKK----------K--- 414 (632)
Q Consensus 349 G~l~srls~D~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~l~lv~l~~~~l~~~~~~~~~~----------~--- 414 (632)
|++++|+++|++.+++.+...+..++..++.+++++++++.. |.++++.+++.|+++...+...+ +
T Consensus 134 G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 213 (598)
T 3qf4_B 134 GDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLG 213 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999888888888877 99998888777766543321111 0
Q ss_pred ---------------------------HHHHH---------------------------HHHHHHHhhhhHHhhcCCcCH
Q 047286 415 ---------------------------NYERL---------------------------HINAFCFFIGSKLVEHGDATF 440 (632)
Q Consensus 415 ---------------------------~~~~~---------------------------~~~~~~~~~g~~~v~~g~~s~ 440 (632)
.+.+. ...++++++|++++..|.+++
T Consensus 214 ~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~ 293 (598)
T 3qf4_B 214 QLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITV 293 (598)
T ss_dssp HHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHGGGTSSCH
T ss_pred HHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCH
Confidence 00000 122356778999999999999
Q ss_pred HHHHHHHHHH--HHHHHHHHHhHHhHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCcccccEEEee------------
Q 047286 441 GEVFKFLSEF--GCFWCLESTAVAPNADKAKGSAASIFEILESKPKIDWSSKDGMTPSTVRGDIVFEH------------ 506 (632)
Q Consensus 441 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~f~~------------ 506 (632)
|.+++++... ...++..+......+..+..+.+|+.++++.+++.+.+. ....++..|+|+|+|
T Consensus 294 g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~--~~~~~~~~~~i~~~~v~~~y~~~~~~l 371 (598)
T 3qf4_B 294 GTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKDDPD--AVELREVRGEIEFKNVWFSYDKKKPVL 371 (598)
T ss_dssp HHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCSS--CCCCCSCCCCEEEEEEECCSSSSSCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC--CCCCCCCCCeEEEEEEEEECCCCCccc
Confidence 9999887332 223456667777788899999999999998877643211 111122334555544
Q ss_pred -----------EEEEEecCCCChHHHHHhhhcCCChhh------------hcHHHH------------------------
Q 047286 507 -----------TVALVGENGNGKSTVISLAERFHNPEQ------------VIYSWI------------------------ 539 (632)
Q Consensus 507 -----------~vaIVG~SGsGKSTL~~ll~r~y~~~~------------~~~~~~------------------------ 539 (632)
++|||||||||||||+++|.|+|+|++ +....+
T Consensus 372 ~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~ 451 (598)
T 3qf4_B 372 KDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKY 451 (598)
T ss_dssp CSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHS
T ss_pred cceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhc
Confidence 799999999999999999999999853 111000
Q ss_pred ---------------HHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh-----------------------
Q 047286 540 ---------------IIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY----------------------- 581 (632)
Q Consensus 540 ---------------~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~----------------------- 581 (632)
..++++++..+|+||||.+||+|.+||||||||+|||||+++
T Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~ 531 (598)
T 3qf4_B 452 GNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQ 531 (598)
T ss_dssp SSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHH
Confidence 114578999999999999999999999999999999999765
Q ss_pred ------------hccccchhhhhcCCEEEEEeCCeEeeecChHHHhccCCchhHHHHHhhhc
Q 047286 582 ------------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKITDGTYASLTALHMS 631 (632)
Q Consensus 582 ------------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~~~~~~ 631 (632)
+++|||+++++.||+|+||++|+|+|+|+|+||+++ +|.|+++++.|.+
T Consensus 532 ~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~~~~ 592 (598)
T 3qf4_B 532 AAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQK-RGFYYELFTSQYG 592 (598)
T ss_dssp HHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHHHHHT-TCHHHHHHHHHHG
T ss_pred HHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhC-CCHHHHHHHHHhh
Confidence 789999999999999999999999999999999997 9999999988753
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-41 Score=381.94 Aligned_cols=281 Identities=28% Similarity=0.352 Sum_probs=217.6
Q ss_pred hhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhH-------------
Q 047286 348 IGAVGARLSTDASAVRSVVGDALGLIIQNIATIAAGLVIAFTA-WKLAFITLAVPSLTIAEGYLKKK------------- 413 (632)
Q Consensus 348 ~G~l~srls~D~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~l~lv~l~~~~l~~~~~~~~~~------------- 413 (632)
.|++++|+++|++.+++.+...+..++..++.+++++++++.. |.++++.+++.|+++...+...+
T Consensus 117 ~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 196 (578)
T 4a82_A 117 VGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQAL 196 (578)
T ss_dssp HHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4999999999999999999888888888888888888888777 99988887777766543321111
Q ss_pred ---------------------------HHHHHH---------------------------HHHHHHHhhhhHHhhcCCcC
Q 047286 414 ---------------------------KNYERL---------------------------HINAFCFFIGSKLVEHGDAT 439 (632)
Q Consensus 414 ---------------------------~~~~~~---------------------------~~~~~~~~~g~~~v~~g~~s 439 (632)
+.+.+. ...++++++|++++..|.++
T Consensus 197 ~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt 276 (578)
T 4a82_A 197 AEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSIT 276 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcC
Confidence 000000 12245678899999999999
Q ss_pred HHHHHHHHHHH--HHHHHHHHHhHHhHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCcccccEEEee-----------
Q 047286 440 FGEVFKFLSEF--GCFWCLESTAVAPNADKAKGSAASIFEILESKPKIDWSSKDGMTPSTVRGDIVFEH----------- 506 (632)
Q Consensus 440 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~f~~----------- 506 (632)
+|.+++++... ...++.........+.++..+.+|++++++.+++.+.+.. ....+...|.|+++|
T Consensus 277 ~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~-~~~~~~~~~~i~~~~v~~~y~~~~~~ 355 (578)
T 4a82_A 277 VGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGVG-AQPIEIKQGRIDIDHVSFQYNDNEAP 355 (578)
T ss_dssp HHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCCCTT-CCCCCCCSCCEEEEEEEECSCSSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCC-ccccCCCCCeEEEEEEEEEcCCCCCc
Confidence 99999887433 2335666777778889999999999999988776432211 111111233444433
Q ss_pred -------------EEEEEecCCCChHHHHHhhhcCCChhh------------hc--------------------------
Q 047286 507 -------------TVALVGENGNGKSTVISLAERFHNPEQ------------VI-------------------------- 535 (632)
Q Consensus 507 -------------~vaIVG~SGsGKSTL~~ll~r~y~~~~------------~~-------------------------- 535 (632)
++|||||||||||||+++|.|+|+|++ +.
T Consensus 356 ~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni 435 (578)
T 4a82_A 356 ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENI 435 (578)
T ss_dssp SEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHH
T ss_pred ceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHH
Confidence 799999999999999999999999843 00
Q ss_pred -------------HHHHHHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh---------------------
Q 047286 536 -------------YSWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY--------------------- 581 (632)
Q Consensus 536 -------------~~~~~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~--------------------- 581 (632)
.+....++++++..+|+|+||.+||+|.+||||||||+|||||+++
T Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~ 515 (578)
T 4a82_A 436 LLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESI 515 (578)
T ss_dssp GGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHH
Confidence 0111225679999999999999999999999999999999999665
Q ss_pred --------------hccccchhhhhcCCEEEEEeCCeEeeecChHHHhccCCchhHHHHHhhh
Q 047286 582 --------------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKITDGTYASLTALHM 630 (632)
Q Consensus 582 --------------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~~~~~ 630 (632)
+++|||+++++.||+|+||++|+|+|+|+|+||+++ +|.|+++++.|.
T Consensus 516 i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~el~~~-~~~~~~~~~~q~ 577 (578)
T 4a82_A 516 IQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK-QGAYEHLYSIQN 577 (578)
T ss_dssp HHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHT-TSHHHHHHTTTT
T ss_pred HHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhC-CcHHHHHHHhhc
Confidence 789999999999999999999999999999999997 999999998874
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-41 Score=407.77 Aligned_cols=282 Identities=34% Similarity=0.549 Sum_probs=225.0
Q ss_pred hhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhH-------------
Q 047286 348 IGAVGARLSTDASAVRSVVGDALGLIIQNIATIAAGLVIAFTA-WKLAFITLAVPSLTIAEGYLKKK------------- 413 (632)
Q Consensus 348 ~G~l~srls~D~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~l~lv~l~~~~l~~~~~~~~~~------------- 413 (632)
.|++++|+++|++.+++.++..+..++..++.+++++++++.. |+++++++++.|+++...++..+
T Consensus 164 ~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 243 (1284)
T 3g5u_A 164 VGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAY 243 (1284)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4999999999999999999999999999999999999888887 99999998888887654422211
Q ss_pred ---------------------------HHHHHH---------------------------HHHHHHHhhhhHHhhcCCcC
Q 047286 414 ---------------------------KNYERL---------------------------HINAFCFFIGSKLVEHGDAT 439 (632)
Q Consensus 414 ---------------------------~~~~~~---------------------------~~~~~~~~~g~~~v~~g~~s 439 (632)
+.+.+. ...++++|+|+.++..|.++
T Consensus 244 ~~~~~~~~E~l~gi~~ikaf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~ 323 (1284)
T 3g5u_A 244 AKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYS 323 (1284)
T ss_dssp HHHHHTTTCCCCCHHHHHTTCCCCSHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHCHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 000000 12345788999999999999
Q ss_pred HHHHHHHHH--HHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCcccccEEEee-----------
Q 047286 440 FGEVFKFLS--EFGCFWCLESTAVAPNADKAKGSAASIFEILESKPKIDWSSKDGMTPSTVRGDIVFEH----------- 506 (632)
Q Consensus 440 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~f~~----------- 506 (632)
+|.+++++. .....++.........++.+..+++|++++++.+|+.+........++..+|+|+|+|
T Consensus 324 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~ 403 (1284)
T 3g5u_A 324 IGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEV 403 (1284)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcccccCCCCCCCCCeEEEEEEEEEcCCCCCC
Confidence 999887653 2333445666677778889999999999999987765432222222233455566554
Q ss_pred --------------EEEEEecCCCChHHHHHhhhcCCChhh------------hc-------------------------
Q 047286 507 --------------TVALVGENGNGKSTVISLAERFHNPEQ------------VI------------------------- 535 (632)
Q Consensus 507 --------------~vaIVG~SGsGKSTL~~ll~r~y~~~~------------~~------------------------- 535 (632)
++|||||||||||||+++|.|+|+|++ +.
T Consensus 404 ~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eN 483 (1284)
T 3g5u_A 404 QILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAEN 483 (1284)
T ss_dssp CSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHH
T ss_pred cceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHH
Confidence 799999999999999999999999843 00
Q ss_pred --------------HHHHHHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh--------------------
Q 047286 536 --------------YSWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY-------------------- 581 (632)
Q Consensus 536 --------------~~~~~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~-------------------- 581 (632)
.+....++++|+.++|+||||.+||+|.+||||||||||||||+++
T Consensus 484 i~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~ 563 (1284)
T 3g5u_A 484 IRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEA 563 (1284)
T ss_dssp HHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHH
T ss_pred HhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHH
Confidence 0111225679999999999999999999999999999999999765
Q ss_pred ---------------hccccchhhhhcCCEEEEEeCCeEeeecChHHHhccCCchhHHHHHhhh
Q 047286 582 ---------------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKITDGTYASLTALHM 630 (632)
Q Consensus 582 ---------------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~~~~~ 630 (632)
++||||++++++||+|+||++|+|+|+|+|+||+++ +|.|++++..|.
T Consensus 564 ~i~~~l~~~~~~~t~i~itH~l~~i~~~d~i~vl~~G~i~~~g~~~~l~~~-~~~~~~~~~~~~ 626 (1284)
T 3g5u_A 564 VVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMRE-KGIYFKLVMTQT 626 (1284)
T ss_dssp HHHHHHHHHHTTSEEEEECSCHHHHTTCSEEEECSSSCCCCEECHHHHHHT-TSHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhC-CCHHHHHHHHhh
Confidence 789999999999999999999999999999999997 999999997764
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-40 Score=369.76 Aligned_cols=282 Identities=27% Similarity=0.363 Sum_probs=217.4
Q ss_pred hhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-HhH-----H-------
Q 047286 349 GAVGARLSTDASAVRSVVGDALGLIIQNIATIAAGLVIAFTA-WKLAFITLAVPSLTIAEGYL-KKK-----K------- 414 (632)
Q Consensus 349 G~l~srls~D~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~l~lv~l~~~~l~~~~~~~-~~~-----~------- 414 (632)
|++++|+++|++.++..+...+..++..++.+++++++++.. |.++++++++.|+++...+. .++ +
T Consensus 122 g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 201 (582)
T 3b5x_A 122 GGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMG 201 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988888888887766 99998888777776543321 111 0
Q ss_pred ---------------------------HHHHH---------------------------HHHHHHHhhhhHHhhcCCcCH
Q 047286 415 ---------------------------NYERL---------------------------HINAFCFFIGSKLVEHGDATF 440 (632)
Q Consensus 415 ---------------------------~~~~~---------------------------~~~~~~~~~g~~~v~~g~~s~ 440 (632)
.+.+. ...++++++|++++..|.+++
T Consensus 202 ~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~ 281 (582)
T 3b5x_A 202 HVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTP 281 (582)
T ss_pred HHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCH
Confidence 00000 122346778999999999999
Q ss_pred HHHHHHHHHH--HHHHHHHHHhHHhHHHHHHHHHHHHHHHHccCCCCCCCCCCC------C---------------CCCc
Q 047286 441 GEVFKFLSEF--GCFWCLESTAVAPNADKAKGSAASIFEILESKPKIDWSSKDG------M---------------TPST 497 (632)
Q Consensus 441 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~------~---------------~~~~ 497 (632)
|.+++++... ...++..+......++.+..+.+|+.++++.+++.+...... . ...+
T Consensus 282 g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~ 361 (582)
T 3b5x_A 282 GTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDNGKYEAERVNGEVDVKDVTFTYQGKEKPALSH 361 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCCCeEEEEEEEEEcCCCCcccccc
Confidence 9999887433 334566777778888999999999999998766532110000 0 0001
Q ss_pred ccccEEEeeEEEEEecCCCChHHHHHhhhcCCChhh------------hcH-----------------------------
Q 047286 498 VRGDIVFEHTVALVGENGNGKSTVISLAERFHNPEQ------------VIY----------------------------- 536 (632)
Q Consensus 498 ~~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~------------~~~----------------------------- 536 (632)
++-+|+-++++|||||||||||||+++|.|+|+|++ ...
T Consensus 362 i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~ 441 (582)
T 3b5x_A 362 VSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAA 441 (582)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccC
Confidence 111233344899999999999999999999998843 000
Q ss_pred -----------HHHHHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh------------------------
Q 047286 537 -----------SWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY------------------------ 581 (632)
Q Consensus 537 -----------~~~~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~------------------------ 581 (632)
.....++++++..+|+||||.+||+|.+||||||||+|||||+++
T Consensus 442 ~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~ 521 (582)
T 3b5x_A 442 EGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQA 521 (582)
T ss_pred CCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHH
Confidence 000125678999999999999999999999999999999999665
Q ss_pred -----------hccccchhhhhcCCEEEEEeCCeEeeecChHHHhccCCchhHHHHHhhhc
Q 047286 582 -----------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKITDGTYASLTALHMS 631 (632)
Q Consensus 582 -----------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~~~~~~ 631 (632)
+++|||+++++.||+|++|++|+|+|+|+|+||+++ +|.|+++++.|..
T Consensus 522 ~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~q~~ 581 (582)
T 3b5x_A 522 ALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQ-DGAYAQLHRIQFG 581 (582)
T ss_pred HHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CcHHHHHHHHhhc
Confidence 788999999999999999999999999999999997 8999999998853
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-40 Score=367.60 Aligned_cols=279 Identities=27% Similarity=0.391 Sum_probs=215.9
Q ss_pred hhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-HhH-----H-------
Q 047286 349 GAVGARLSTDASAVRSVVGDALGLIIQNIATIAAGLVIAFTA-WKLAFITLAVPSLTIAEGYL-KKK-----K------- 414 (632)
Q Consensus 349 G~l~srls~D~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~l~lv~l~~~~l~~~~~~~-~~~-----~------- 414 (632)
|++++|+++|++.++..+...+..++..++.+++++++++.. |.++++.+++.|+++..... .++ +
T Consensus 122 g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 201 (582)
T 3b60_A 122 GTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMG 201 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998888888888777 99888887777765543321 111 0
Q ss_pred ---------------------------HHHHH---------------------------HHHHHHHhhhhHHhhcCCcCH
Q 047286 415 ---------------------------NYERL---------------------------HINAFCFFIGSKLVEHGDATF 440 (632)
Q Consensus 415 ---------------------------~~~~~---------------------------~~~~~~~~~g~~~v~~g~~s~ 440 (632)
.+.+. ...++++++|++++..|.+++
T Consensus 202 ~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~ 281 (582)
T 3b60_A 202 QVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTA 281 (582)
T ss_dssp HHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHH
T ss_pred HHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCH
Confidence 00000 122346778889999999999
Q ss_pred HHHHHHHHHH--HHHHHHHHHhHHhHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCcccccE----------------
Q 047286 441 GEVFKFLSEF--GCFWCLESTAVAPNADKAKGSAASIFEILESKPKIDWSSKDGMTPSTVRGDI---------------- 502 (632)
Q Consensus 441 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I---------------- 502 (632)
|.+++++... ...++..+......+..+..+.+|+.++++.+++.+.... ..++..+.|
T Consensus 282 g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~---~~~~~~~~i~~~~v~~~y~~~~~~~ 358 (582)
T 3b60_A 282 GTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDEGKR---VIDRATGDLEFRNVTFTYPGREVPA 358 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCCCCCB---CCSCCCCCEEEEEEEECSSSSSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCCCC---CCCCCCCcEEEEEEEEEcCCCCCcc
Confidence 9999887433 3345667777778889999999999999987765321100 000011112
Q ss_pred --------EEeeEEEEEecCCCChHHHHHhhhcCCChhh------------hcHH-------------------------
Q 047286 503 --------VFEHTVALVGENGNGKSTVISLAERFHNPEQ------------VIYS------------------------- 537 (632)
Q Consensus 503 --------~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~------------~~~~------------------------- 537 (632)
+-++++|||||||||||||+++|.|+|+|++ ....
T Consensus 359 l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~ 438 (582)
T 3b60_A 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIA 438 (582)
T ss_dssp EEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHH
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHh
Confidence 2234899999999999999999999998843 0000
Q ss_pred ---------------HHHHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh---------------------
Q 047286 538 ---------------WIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY--------------------- 581 (632)
Q Consensus 538 ---------------~~~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~--------------------- 581 (632)
....++++++.++|+||||.+||+|.+||||||||+|||||+++
T Consensus 439 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~ 518 (582)
T 3b60_A 439 YARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERA 518 (582)
T ss_dssp TTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHH
Confidence 00115678999999999999999999999999999999999765
Q ss_pred --------------hccccchhhhhcCCEEEEEeCCeEeeecChHHHhccCCchhHHHHHhhhc
Q 047286 582 --------------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKITDGTYASLTALHMS 631 (632)
Q Consensus 582 --------------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~~~~~~ 631 (632)
+++|||+++++.||+|++|++|+|+|.|+|+||++. +|.|+++++.|..
T Consensus 519 i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~q~~ 581 (582)
T 3b60_A 519 IQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ-HGVYAQLHKMQFG 581 (582)
T ss_dssp HHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHH-TSSHHHHHHHTCC
T ss_pred HHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEecCHHHHHHc-CCHHHHHHHHhcc
Confidence 789999999999999999999999999999999997 9999999998853
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-34 Score=322.28 Aligned_cols=254 Identities=26% Similarity=0.353 Sum_probs=213.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------------------------------------
Q 047286 2 AACLPAIVIAGGITATVVAKLSCRGQIAYAEAEMLLSTQLEP-------------------------------------- 43 (632)
Q Consensus 2 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-------------------------------------- 43 (632)
++++|+++++..++.++..+..++.++..++.++.+.|.+.|
T Consensus 170 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (587)
T 3qf4_A 170 IFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFA 249 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888999999999999999999999999999954
Q ss_pred ------------------------CCcccHHHH-----------------HHHHHHHHHHHHHHHHHHHHhccCCCCCC-
Q 047286 44 ------------------------LEDMPLGQT-----------------SLNVNAFAAGQAAACKMFETIERIPKINP- 81 (632)
Q Consensus 44 ------------------------~~~~~~~~~-----------------~~~~~~~~~~~~a~~ri~~~~~~~~~~~~- 81 (632)
.+.+++|.+ ...+..++++.+|++|++++++.+++...
T Consensus 250 ~~~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~ 329 (587)
T 3qf4_A 250 LPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEA 329 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCC
Confidence 233455543 23456788999999999999987654211
Q ss_pred ---------------------C--C-----CcEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC--------------
Q 047286 82 ---------------------Y--D-----NRFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY-------------- 119 (632)
Q Consensus 82 ---------------------~--~-----~~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~-------------- 119 (632)
+ . +++||++++||+++|+||||||||||+++|.|+...
T Consensus 330 ~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~ 409 (587)
T 3qf4_A 330 DNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRT 409 (587)
T ss_dssp TTCBCCSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGG
T ss_pred CCccccCCCCCcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEccc
Confidence 0 0 019999999999999999999999999999844211
Q ss_pred -CcHHhhcceEEEcccCcccccccccccccccCCCCCCHHHHHHHHHHccchhhHhhCCccccccc--------------
Q 047286 120 -APEAEQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV-------------- 184 (632)
Q Consensus 120 -~~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~~~v-------------- 184 (632)
++..+|++++||+|+|++|.+++.+ |+.++.+..+++++.++++.+++++++..+|.|+++.+
T Consensus 410 ~~~~~~r~~i~~v~Q~~~lf~~tv~e--ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQr 487 (587)
T 3qf4_A 410 VKLKDLRGHISAVPQETVLFSGTIKE--NLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQR 487 (587)
T ss_dssp BCHHHHHHHEEEECSSCCCCSEEHHH--HHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHH
T ss_pred CCHHHHHhheEEECCCCcCcCccHHH--HHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHH
Confidence 1234688999999999999888877 79888877888999999999999999999998888766
Q ss_pred ------------------ccCCCCHHHHHHHHHHHHHHhCCceEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHhcC
Q 047286 185 ------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIED 246 (632)
Q Consensus 185 ------------------~ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~~ 246 (632)
+|++||+++++.+++.++++.+++|+|+|||+++.+..||+|++|++|+|+++|+|+|+.+.
T Consensus 488 v~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~el~~~ 567 (587)
T 3qf4_A 488 LSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEH 567 (587)
T ss_dssp HHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 39999999999999999998889999999999999999999999999999999999999876
Q ss_pred CCcHHHHHHHHH
Q 047286 247 PEGAYSQLVRLQ 258 (632)
Q Consensus 247 ~~~~~~~~~~~~ 258 (632)
++.|.+++..+
T Consensus 568 -~~~~~~~~~~~ 578 (587)
T 3qf4_A 568 -CKPYREIYESQ 578 (587)
T ss_dssp -CHHHHHHHHHH
T ss_pred -CcHHHHHHHHH
Confidence 57788877654
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-34 Score=320.49 Aligned_cols=254 Identities=34% Similarity=0.472 Sum_probs=213.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------------------------------------
Q 047286 2 AACLPAIVIAGGITATVVAKLSCRGQIAYAEAEMLLSTQLEP-------------------------------------- 43 (632)
Q Consensus 2 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-------------------------------------- 43 (632)
++++|+++++..++.+..++..++.++..++.++.+.|.+.|
T Consensus 168 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (578)
T 4a82_A 168 LFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYS 247 (578)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888999999999999999999999999999999943
Q ss_pred ------------------------CCcccHHH-----------------HHHHHHHHHHHHHHHHHHHHHhccCCCCCC-
Q 047286 44 ------------------------LEDMPLGQ-----------------TSLNVNAFAAGQAAACKMFETIERIPKINP- 81 (632)
Q Consensus 44 ------------------------~~~~~~~~-----------------~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~- 81 (632)
.+.+++|. +...+..++++.+|++|++++++.+++...
T Consensus 248 ~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~ 327 (578)
T 4a82_A 248 FAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNG 327 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCC
Confidence 22344443 334567889999999999999987654211
Q ss_pred ---------------------CC-------CcEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC--------------
Q 047286 82 ---------------------YD-------NRFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY-------------- 119 (632)
Q Consensus 82 ---------------------~~-------~~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~-------------- 119 (632)
+. +++||++++||+++|+||||||||||+++|.|+...
T Consensus 328 ~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~ 407 (578)
T 4a82_A 328 VGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKD 407 (578)
T ss_dssp TTCCCCCCCSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGG
T ss_pred CCccccCCCCCeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhh
Confidence 00 019999999999999999999999999999854211
Q ss_pred -CcHHhhcceEEEcccCcccccccccccccccCCCCCCHHHHHHHHHHccchhhHhhCCccccccc--------------
Q 047286 120 -APEAEQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV-------------- 184 (632)
Q Consensus 120 -~~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~~~v-------------- 184 (632)
++..+|++++||+|+|++|.+++.+ |+.++.+..+++++.++++.+++++++..+|.|++|.+
T Consensus 408 ~~~~~~r~~i~~v~Q~~~l~~~tv~e--ni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qr 485 (578)
T 4a82_A 408 FLTGSLRNQIGLVQQDNILFSDTVKE--NILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQR 485 (578)
T ss_dssp SCHHHHHHTEEEECSSCCCCSSBHHH--HHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHH
T ss_pred CCHHHHhhheEEEeCCCccCcccHHH--HHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHH
Confidence 2234678899999999999988877 79888777788999999999999999999988887766
Q ss_pred ------------------ccCCCCHHHHHHHHHHHHHHhCCceEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHhcC
Q 047286 185 ------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIED 246 (632)
Q Consensus 185 ------------------~ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~~ 246 (632)
+|++||+++++.+.+.++++.+++|+|+|||+++.++.||+|++|++|+++++|+|+|+.+.
T Consensus 486 v~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~el~~~ 565 (578)
T 4a82_A 486 LSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK 565 (578)
T ss_dssp HHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHT
T ss_pred HHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhC
Confidence 39999999999999999998888999999999999989999999999999999999999876
Q ss_pred CCcHHHHHHHHH
Q 047286 247 PEGAYSQLVRLQ 258 (632)
Q Consensus 247 ~~~~~~~~~~~~ 258 (632)
++.|.++++.|
T Consensus 566 -~~~~~~~~~~q 576 (578)
T 4a82_A 566 -QGAYEHLYSIQ 576 (578)
T ss_dssp -TSHHHHHHTTT
T ss_pred -CcHHHHHHHhh
Confidence 57788777543
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-34 Score=319.59 Aligned_cols=255 Identities=33% Similarity=0.503 Sum_probs=214.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------------------------------------
Q 047286 2 AACLPAIVIAGGITATVVAKLSCRGQIAYAEAEMLLSTQLEP-------------------------------------- 43 (632)
Q Consensus 2 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-------------------------------------- 43 (632)
++++|+++++..++.+..++..++.++..++.++.+.|.+.|
T Consensus 184 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (598)
T 3qf4_B 184 LSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVL 263 (598)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888889999999999999999999999999999944
Q ss_pred ------------------------CCcccHHH-----------------HHHHHHHHHHHHHHHHHHHHHhccCCCCCC-
Q 047286 44 ------------------------LEDMPLGQ-----------------TSLNVNAFAAGQAAACKMFETIERIPKINP- 81 (632)
Q Consensus 44 ------------------------~~~~~~~~-----------------~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~- 81 (632)
.+.+++|. +...+..++++.+|++|++++++.+++.+.
T Consensus 264 ~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~ 343 (598)
T 3qf4_B 264 PPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKDDP 343 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Confidence 22334443 344577889999999999999987654210
Q ss_pred --------------------C--C----CcEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCC---------------CC
Q 047286 82 --------------------Y--D----NRFLQHVPSGTTVALVGQSGSGKSTVINLVESFRF---------------YA 120 (632)
Q Consensus 82 --------------------~--~----~~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~---------------~~ 120 (632)
+ . +++||++++||+++|+||||||||||+++|.|+.. .+
T Consensus 344 ~~~~~~~~~~~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~ 423 (598)
T 3qf4_B 344 DAVELREVRGEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIK 423 (598)
T ss_dssp SCCCCCSCCCCEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSC
T ss_pred CCCCCCCCCCeEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCC
Confidence 0 0 12999999999999999999999999999985421 12
Q ss_pred cHHhhcceEEEcccCcccccccccccccccCCCCCCHHHHHHHHHHccchhhHhhCCccccccc----------------
Q 047286 121 PEAEQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV---------------- 184 (632)
Q Consensus 121 ~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~~~v---------------- 184 (632)
+..+|++++||+|+|++|.+++.+ |+.++.+..+++++.++++.++++++++.+|.|+++.+
T Consensus 424 ~~~~r~~i~~v~Q~~~lf~~tv~e--ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~ 501 (598)
T 3qf4_B 424 RSSLRSSIGIVLQDTILFSTTVKE--NLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLA 501 (598)
T ss_dssp HHHHHHHEEEECTTCCCCSSBHHH--HHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHH
T ss_pred HHHHHhceEEEeCCCccccccHHH--HHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHH
Confidence 234678999999999999888877 78888776778889999999999999999888887765
Q ss_pred ----------------ccCCCCHHHHHHHHHHHHHHhCCceEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHhcCCC
Q 047286 185 ----------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPE 248 (632)
Q Consensus 185 ----------------~ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~~~~ 248 (632)
+|++||+++++.+.+.++++.+++|+|+|||+++.++.||+|++|++|+++++|+|+|+.+. +
T Consensus 502 iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~ 580 (598)
T 3qf4_B 502 ITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQK-R 580 (598)
T ss_dssp HHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHHHHHT-T
T ss_pred HHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhC-C
Confidence 39999999999999999999889999999999999999999999999999999999999876 6
Q ss_pred cHHHHHHHHHh
Q 047286 249 GAYSQLVRLQE 259 (632)
Q Consensus 249 ~~~~~~~~~~~ 259 (632)
+.|.+++..+.
T Consensus 581 ~~~~~~~~~~~ 591 (598)
T 3qf4_B 581 GFYYELFTSQY 591 (598)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHh
Confidence 78888876653
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-34 Score=326.33 Aligned_cols=163 Identities=20% Similarity=0.282 Sum_probs=105.4
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHH---------------------HHHHhCCCCC------------------cHHhh
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVI---------------------NLVESFRFYA------------------PEAEQ 125 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl---------------------~ll~~~~~~~------------------~~~~r 125 (632)
.+||+|++||+++|+||||||||||+ +++.++...+ ....+
T Consensus 36 ~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~~~~~~ 115 (670)
T 3ux8_A 36 NIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTTSRNPR 115 (670)
T ss_dssp SEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-----C
T ss_pred ccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchhhccch
Confidence 49999999999999999999999997 4444322111 00123
Q ss_pred cceEEEcccCcccc------------------cccccccccccCCC----CCCH-------H---HHHHHHHHccc----
Q 047286 126 EKIGLVSKEPIFLF------------------CDFNEGQYIPYGKQ----NASD-------E---HIRPAVQLANA---- 169 (632)
Q Consensus 126 ~~i~~v~Q~~~~~~------------------~~~~~~~~i~~~~~----~~~~-------~---~~~~~~~~~~l---- 169 (632)
..+++++|.+.++. ..++..+|+.+... .... + +..+.++..++
T Consensus 116 ~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~ 195 (670)
T 3ux8_A 116 STVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVGLDYLT 195 (670)
T ss_dssp CBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHHTTCTTCC
T ss_pred hceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHcCCchhh
Confidence 45666666543210 11122224443210 0000 0 01123455554
Q ss_pred -hhhHhhCCccccccc-------------------ccCCCCHHHHHHHHHHHHHHh-CCceEEEEecCchHHhhcCeEEE
Q 047286 170 -EKSIDKLPLGLDTVV-------------------ATNAVDAQSERIVQAAMVKLV-TNQTVVIVANCLITIRNADCIIM 228 (632)
Q Consensus 170 -~~~i~~l~~g~~~~v-------------------~ts~LD~~~~~~i~~~l~~~~-~~~tviiitH~~~~~~~aD~i~v 228 (632)
+..+.+||+|+++++ +|++||+.+++.+++.|++++ ++.|+|+|||+++.+..||+|++
T Consensus 196 ~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~d~ii~ 275 (670)
T 3ux8_A 196 LSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAADYLID 275 (670)
T ss_dssp TTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHHHCSEEEE
T ss_pred hcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEE
Confidence 355788999998777 399999999999999999985 47899999999998888999999
Q ss_pred E------eCCeEEEecChhHHhcCC
Q 047286 229 V------SKGKIVEKGTHDELIEDP 247 (632)
Q Consensus 229 l------~~G~i~~~g~~~el~~~~ 247 (632)
| ++|++++.|+++++...+
T Consensus 276 l~~g~~~~~G~i~~~g~~~~~~~~~ 300 (670)
T 3ux8_A 276 IGPGAGIHGGEVVAAGTPEEVMNDP 300 (670)
T ss_dssp ECSSSGGGCCSEEEEECHHHHHTCT
T ss_pred ecccccccCCEEEEecCHHHHhcCc
Confidence 9 899999999999987654
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-33 Score=311.96 Aligned_cols=254 Identities=33% Similarity=0.474 Sum_probs=210.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------------------------------------
Q 047286 2 AACLPAIVIAGGITATVVAKLSCRGQIAYAEAEMLLSTQLEP-------------------------------------- 43 (632)
Q Consensus 2 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-------------------------------------- 43 (632)
++++|+++++..++.+..++..++.++..++.++.+.|.+.|
T Consensus 172 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (582)
T 3b5x_A 172 IVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIA 251 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777777888889999999999999999999999999943
Q ss_pred ------------------------CCcccHHHH-----------------HHHHHHHHHHHHHHHHHHHHhccCCCCCC-
Q 047286 44 ------------------------LEDMPLGQT-----------------SLNVNAFAAGQAAACKMFETIERIPKINP- 81 (632)
Q Consensus 44 ------------------------~~~~~~~~~-----------------~~~~~~~~~~~~a~~ri~~~~~~~~~~~~- 81 (632)
.+.+++|.+ ...+..++++.++++|++++++.+++.+.
T Consensus 252 ~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~ 331 (582)
T 3b5x_A 252 DPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDNG 331 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCC
Confidence 234455543 34567889999999999999986543210
Q ss_pred -------------------CC-------CcEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC---------------C
Q 047286 82 -------------------YD-------NRFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY---------------A 120 (632)
Q Consensus 82 -------------------~~-------~~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~---------------~ 120 (632)
+. +++||++++||+++|+||||||||||+++|.|+..+ +
T Consensus 332 ~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~ 411 (582)
T 3b5x_A 332 KYEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYK 411 (582)
T ss_pred CCCCCCCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCC
Confidence 00 128999999999999999999999999999854211 1
Q ss_pred cHHhhcceEEEcccCcccccccccccccccCC-CCCCHHHHHHHHHHccchhhHhhCCccccccc---------------
Q 047286 121 PEAEQEKIGLVSKEPIFLFCDFNEGQYIPYGK-QNASDEHIRPAVQLANAEKSIDKLPLGLDTVV--------------- 184 (632)
Q Consensus 121 ~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~l~~~i~~l~~g~~~~v--------------- 184 (632)
+..+|++++||+|+|.+|..++.+ |+.++. +..++++++++++.++++++++++|+|++|.+
T Consensus 412 ~~~~~~~i~~v~Q~~~l~~~tv~e--ni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~ 489 (582)
T 3b5x_A 412 LTNLRRHFALVSQNVHLFNDTIAN--NIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRV 489 (582)
T ss_pred HHHHhcCeEEEcCCCccccccHHH--HHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHH
Confidence 234678899999999999887777 788876 45678889999999999999998888887765
Q ss_pred -----------------ccCCCCHHHHHHHHHHHHHHhCCceEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHhcCC
Q 047286 185 -----------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDP 247 (632)
Q Consensus 185 -----------------~ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~~~ 247 (632)
+|++||+.+++.+.+.|+++.+++|+|++||+++.++.||+|++|++|++++.|+++|+.+.
T Consensus 490 ~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~- 568 (582)
T 3b5x_A 490 AIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQ- 568 (582)
T ss_pred HHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-
Confidence 39999999999999999998779999999999999989999999999999999999999876
Q ss_pred CcHHHHHHHHH
Q 047286 248 EGAYSQLVRLQ 258 (632)
Q Consensus 248 ~~~~~~~~~~~ 258 (632)
.+.|.++++.|
T Consensus 569 ~~~~~~~~~~q 579 (582)
T 3b5x_A 569 DGAYAQLHRIQ 579 (582)
T ss_pred CcHHHHHHHHh
Confidence 67788887654
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-33 Score=311.40 Aligned_cols=254 Identities=32% Similarity=0.468 Sum_probs=210.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------------------------------------
Q 047286 2 AACLPAIVIAGGITATVVAKLSCRGQIAYAEAEMLLSTQLEP-------------------------------------- 43 (632)
Q Consensus 2 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-------------------------------------- 43 (632)
++++|+++++..++.+..++..++.++..++.++.+.|.+.|
T Consensus 172 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (582)
T 3b60_A 172 VVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSIS 251 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777777888889999999999999999999999999943
Q ss_pred ------------------------CCcccHHHH-----------------HHHHHHHHHHHHHHHHHHHHhccCCCCCC-
Q 047286 44 ------------------------LEDMPLGQT-----------------SLNVNAFAAGQAAACKMFETIERIPKINP- 81 (632)
Q Consensus 44 ------------------------~~~~~~~~~-----------------~~~~~~~~~~~~a~~ri~~~~~~~~~~~~- 81 (632)
.+.+++|.+ ...+..++++.++++|++++++.+++.+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~ 331 (582)
T 3b60_A 252 DPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDEG 331 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC
Confidence 234455543 34567889999999999999986543210
Q ss_pred -------------------CC---C----cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC---------------C
Q 047286 82 -------------------YD---N----RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY---------------A 120 (632)
Q Consensus 82 -------------------~~---~----~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~---------------~ 120 (632)
+. . ++||++++||+++|+||||||||||+++|.|+... +
T Consensus 332 ~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~ 411 (582)
T 3b60_A 332 KRVIDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYT 411 (582)
T ss_dssp CBCCSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBC
T ss_pred CCCCCCCCCcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccC
Confidence 01 1 28999999999999999999999999999854211 1
Q ss_pred cHHhhcceEEEcccCcccccccccccccccCC-CCCCHHHHHHHHHHccchhhHhhCCccccccc---------------
Q 047286 121 PEAEQEKIGLVSKEPIFLFCDFNEGQYIPYGK-QNASDEHIRPAVQLANAEKSIDKLPLGLDTVV--------------- 184 (632)
Q Consensus 121 ~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~l~~~i~~l~~g~~~~v--------------- 184 (632)
+..+|++++||+|+|.+|..++.+ |+.++. +..++++++++++.++++++++++|+|+++.+
T Consensus 412 ~~~~~~~i~~v~Q~~~l~~~tv~e--ni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl 489 (582)
T 3b60_A 412 LASLRNQVALVSQNVHLFNDTVAN--NIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRI 489 (582)
T ss_dssp HHHHHHTEEEECSSCCCCSSBHHH--HHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHH
T ss_pred HHHHHhhCeEEccCCcCCCCCHHH--HHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 234678899999999999887777 788876 45678899999999999999999988888766
Q ss_pred -----------------ccCCCCHHHHHHHHHHHHHHhCCceEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHhcCC
Q 047286 185 -----------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDP 247 (632)
Q Consensus 185 -----------------~ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~~~ 247 (632)
+|++||+++++.+.+.++++.+++|+|++||+++.++.||+|++|++|++++.|+++|+.+.
T Consensus 490 ~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~- 568 (582)
T 3b60_A 490 AIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ- 568 (582)
T ss_dssp HHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHH-
T ss_pred HHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEecCHHHHHHc-
Confidence 39999999999999999998889999999999999988999999999999999999999875
Q ss_pred CcHHHHHHHHH
Q 047286 248 EGAYSQLVRLQ 258 (632)
Q Consensus 248 ~~~~~~~~~~~ 258 (632)
++.|.++++.|
T Consensus 569 ~~~~~~~~~~q 579 (582)
T 3b60_A 569 HGVYAQLHKMQ 579 (582)
T ss_dssp TSSHHHHHHHT
T ss_pred CCHHHHHHHHh
Confidence 56788777654
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-34 Score=295.68 Aligned_cols=169 Identities=33% Similarity=0.457 Sum_probs=131.3
Q ss_pred HHhHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCcccccEEEee-----------------------EEEEEecCCCC
Q 047286 461 VAPNADKAKGSAASIFEILESKPKIDWSSKDGMTPSTVRGDIVFEH-----------------------TVALVGENGNG 517 (632)
Q Consensus 461 ~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~f~~-----------------------~vaIVG~SGsG 517 (632)
.+++++++..+++|++++++.+++...... ........|.|+|++ ++|||||||||
T Consensus 14 ~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~-~~~~~~~~~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsG 92 (306)
T 3nh6_A 14 LVPRGSHMFIDMENMFDLLKEETEVKDLPG-AGPLRFQKGRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAG 92 (306)
T ss_dssp -----CCTTCCHHHHHHHHHHHHSCCCCTT-CBCCCCSSCCEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHH
T ss_pred cchhHHHHHHHHHHHHHHHhCCcccccccc-ccccCCCCCeEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCch
Confidence 345666777889999999877654332111 111111223444443 79999999999
Q ss_pred hHHHHHhhhcCCChhh---------------------------------------------------hcHHHHHHHHHHH
Q 047286 518 KSTVISLAERFHNPEQ---------------------------------------------------VIYSWIIIKCTNF 546 (632)
Q Consensus 518 KSTL~~ll~r~y~~~~---------------------------------------------------~~~~~~~~~~~~~ 546 (632)
||||+++|.|+|+|++ ++......+++++
T Consensus 93 KSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~ 172 (306)
T 3nh6_A 93 KSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDA 172 (306)
T ss_dssp HHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHH
Confidence 9999999999999843 0011112356789
Q ss_pred HhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh-----------------------------------hccccchhhh
Q 047286 547 IASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY-----------------------------------CGCGSPPYHY 591 (632)
Q Consensus 547 i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~-----------------------------------~~iahrl~~~ 591 (632)
+..+|+||+|.+|++|.+||||||||+|||||+++ |+||||++++
T Consensus 173 i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~ 252 (306)
T 3nh6_A 173 IMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTV 252 (306)
T ss_dssp HHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHH
T ss_pred HHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHH
Confidence 99999999999999999999999999999999765 7899999999
Q ss_pred hcCCEEEEEeCCeEeeecChHHHhccCCchhHHHHHhhhc
Q 047286 592 KNADITSVVKNGVIAEKGRHDALMKITDGTYASLTALHMS 631 (632)
Q Consensus 592 ~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~~~~~~ 631 (632)
+.||+|+||++|+|+|.|+|+||++. +|.|++||+.|..
T Consensus 253 ~~aD~i~vl~~G~iv~~G~~~el~~~-~~~y~~l~~~q~~ 291 (306)
T 3nh6_A 253 VNADQILVIKDGCIVERGRHEALLSR-GGVYADMWQLQQG 291 (306)
T ss_dssp HTCSEEEEEETTEEEEEECHHHHHHH-TSHHHHHHHHHHC
T ss_pred HcCCEEEEEECCEEEEECCHHHHHhc-ChHHHHHHHHHHh
Confidence 99999999999999999999999997 9999999988753
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-33 Score=285.87 Aligned_cols=203 Identities=32% Similarity=0.494 Sum_probs=167.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCC----------------------C-C-C----cEEEEeeCCCEEEEEcCCCch
Q 047286 54 LNVNAFAAGQAAACKMFETIERIPKINP----------------------Y-D-N----RFLQHVPSGTTVALVGQSGSG 105 (632)
Q Consensus 54 ~~~~~~~~~~~a~~ri~~~~~~~~~~~~----------------------~-~-~----~~~~~i~~Ge~~~ivG~sGsG 105 (632)
+.+..++++.++++|++++++.+++... + . . .+||+|++||+++|+||||||
T Consensus 13 ~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsG 92 (306)
T 3nh6_A 13 GLVPRGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAG 92 (306)
T ss_dssp ------CCTTCCHHHHHHHHHHHHSCCCCTTCBCCCCSSCCEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHH
T ss_pred ccchhHHHHHHHHHHHHHHHhCCccccccccccccCCCCCeEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCch
Confidence 3466788999999999999986543210 0 0 0 199999999999999999999
Q ss_pred HHHHHHHHHhCCCC---------------CcHHhhcceEEEcccCcccccccccccccccCCCCCCHHHHHHHHHHccch
Q 047286 106 KSTVINLVESFRFY---------------APEAEQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAE 170 (632)
Q Consensus 106 KSTLl~ll~~~~~~---------------~~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~ 170 (632)
||||+++|.|+... +...+|++|+||+|+|.+|..++.+ |+.++......+++.++++.+++.
T Consensus 93 KSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~e--Ni~~~~~~~~~~~~~~~~~~~~l~ 170 (306)
T 3nh6_A 93 KSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIAD--NIRYGRVTAGNDEVEAAAQAAGIH 170 (306)
T ss_dssp HHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHH--HHHTTSTTCCHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHH--HHHhhcccCCHHHHHHHHHHhCcH
Confidence 99999999854211 1234688999999999999888877 788887777888999999999999
Q ss_pred hhHhhCCccccccc--------------------------------ccCCCCHHHHHHHHHHHHHHhCCceEEEEecCch
Q 047286 171 KSIDKLPLGLDTVV--------------------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLI 218 (632)
Q Consensus 171 ~~i~~l~~g~~~~v--------------------------------~ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~ 218 (632)
+++..+|.|+++.+ +|++||+.+++.+++.|+++.+++|+|+|||+++
T Consensus 171 ~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~ 250 (306)
T 3nh6_A 171 DAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLS 250 (306)
T ss_dssp HHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHH
T ss_pred HHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChH
Confidence 99988888777655 3999999999999999999988899999999999
Q ss_pred HHhhcCeEEEEeCCeEEEecChhHHhcCCCcHHHHHHHHHh
Q 047286 219 TIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQE 259 (632)
Q Consensus 219 ~~~~aD~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~~~~ 259 (632)
.+..||+|++|++|+|++.|+++++++. .+.|.+++..+.
T Consensus 251 ~~~~aD~i~vl~~G~iv~~G~~~el~~~-~~~y~~l~~~q~ 290 (306)
T 3nh6_A 251 TVVNADQILVIKDGCIVERGRHEALLSR-GGVYADMWQLQQ 290 (306)
T ss_dssp HHHTCSEEEEEETTEEEEEECHHHHHHH-TSHHHHHHHHHH
T ss_pred HHHcCCEEEEEECCEEEEECCHHHHHhc-ChHHHHHHHHHH
Confidence 9989999999999999999999999876 678888887664
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.98 E-value=2.9e-32 Score=314.10 Aligned_cols=157 Identities=17% Similarity=0.171 Sum_probs=119.7
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC-cHHhhcceEEEcccCcccccccccccccccCCCCCCHHHHHHHH
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA-PEAEQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAV 164 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~-~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 164 (632)
+||++++|++++|+||||||||||+++|.+..... +...+.+++|++|++..++...+..+|+.+..... .+++.+++
T Consensus 454 vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~~~~~~-~~~v~~~L 532 (986)
T 2iw3_A 454 TQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGT-KEAIKDKL 532 (986)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCCCCCCTTSBHHHHHHTTCSSC-HHHHHHHH
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEcccccccccCCcHHHHHHHhhcCH-HHHHHHHH
Confidence 89999999999999999999999999998422211 11112347899987532333333333554311112 67788889
Q ss_pred HHccch-----hhHhhCCccccccc-----------------ccCCCCHHHHHHHHHHHHHHhCCceEEEEecCchHHhh
Q 047286 165 QLANAE-----KSIDKLPLGLDTVV-----------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRN 222 (632)
Q Consensus 165 ~~~~l~-----~~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~ 222 (632)
+..++. ..+.+||+|+++++ +|++||+.+++.+.+.|++ .+.|+|++||++..+..
T Consensus 533 ~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~ 610 (986)
T 2iw3_A 533 IEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDN 610 (986)
T ss_dssp HHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHH
T ss_pred HHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHH
Confidence 988873 34678999999888 3999999999999999988 68999999999998865
Q ss_pred -cCeEEEEeCCeEE-EecChhHHhc
Q 047286 223 -ADCIIMVSKGKIV-EKGTHDELIE 245 (632)
Q Consensus 223 -aD~i~vl~~G~i~-~~g~~~el~~ 245 (632)
||+|++|++|+++ ..|+++++..
T Consensus 611 ~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 611 VCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp HCSEEEEEETTEEEEEESCHHHHHH
T ss_pred hCCEEEEEECCeeecCCCCHHHHHh
Confidence 9999999999997 5899888753
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.2e-30 Score=283.43 Aligned_cols=139 Identities=20% Similarity=0.215 Sum_probs=94.4
Q ss_pred eeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHHh--------------------------hc--ceEEEccc----Ccc
Q 047286 90 VPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAE--------------------------QE--KIGLVSKE----PIF 137 (632)
Q Consensus 90 i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~~--------------------------r~--~i~~v~Q~----~~~ 137 (632)
+++||++||+||||||||||+|+|.|+...+.... .. .+....|. +.+
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKF 101 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGTT
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhhh
Confidence 46999999999999999999999986532211100 00 11222222 211
Q ss_pred cccccccccccccCCCCCCHHHHHHHHHHccch----hhHhhCCccccccc-----------------ccCCCCHHHHHH
Q 047286 138 LFCDFNEGQYIPYGKQNASDEHIRPAVQLANAE----KSIDKLPLGLDTVV-----------------ATNAVDAQSERI 196 (632)
Q Consensus 138 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~----~~i~~l~~g~~~~v-----------------~ts~LD~~~~~~ 196 (632)
+.++..+ ++.... ..+++.++++..++. ..+.+||+|+++++ +|++||+.++..
T Consensus 102 ~~~~v~~--~l~~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~ 176 (538)
T 3ozx_A 102 LKGTVNE--ILTKID---ERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMN 176 (538)
T ss_dssp CCSBHHH--HHHHHC---CSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHH
T ss_pred ccCcHHH--Hhhcch---hHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHH
Confidence 1121111 111111 112345666666654 45778999999888 399999999999
Q ss_pred HHHHHHHHhCCceEEEEecCchHHhh-cCeEEEEeCCe
Q 047286 197 VQAAMVKLVTNQTVVIVANCLITIRN-ADCIIMVSKGK 233 (632)
Q Consensus 197 i~~~l~~~~~~~tviiitH~~~~~~~-aD~i~vl~~G~ 233 (632)
+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|.
T Consensus 177 l~~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 177 MAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGES 214 (538)
T ss_dssp HHHHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred HHHHHHHHhCCCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence 99999999778999999999998865 99999998654
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.5e-30 Score=285.48 Aligned_cols=141 Identities=18% Similarity=0.200 Sum_probs=103.1
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHH--------------------------hhcceEEEcccCcccc
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEA--------------------------EQEKIGLVSKEPIFLF 139 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~--------------------------~r~~i~~v~Q~~~~~~ 139 (632)
+| ++++||+++|+||||||||||+++|.|+...+... .+..+++++|....+.
T Consensus 111 vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 189 (607)
T 3bk7_A 111 LP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLP 189 (607)
T ss_dssp CC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGG
T ss_pred CC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeechhhhch
Confidence 55 78999999999999999999999998753221000 1124778888643222
Q ss_pred ----cccccccccccCCCCCCHHHHHHHHHHccchh----hHhhCCcccccccc-----------------cCCCCHHHH
Q 047286 140 ----CDFNEGQYIPYGKQNASDEHIRPAVQLANAEK----SIDKLPLGLDTVVA-----------------TNAVDAQSE 194 (632)
Q Consensus 140 ----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~----~i~~l~~g~~~~v~-----------------ts~LD~~~~ 194 (632)
.++.+ ++.... ..+++.++++..++.+ .+.+||+|++++++ |++||+.++
T Consensus 190 ~~~~~tv~e--~l~~~~---~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~ 264 (607)
T 3bk7_A 190 KAVKGKVRE--LLKKVD---EVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQR 264 (607)
T ss_dssp GTCCSBHHH--HHHHTC---CSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHH
T ss_pred hhccccHHH--HhhhhH---HHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHH
Confidence 22222 332211 1234567777777643 46789999998883 999999999
Q ss_pred HHHHHHHHHHh-CCceEEEEecCchHHhh-cCeEEEEeCC
Q 047286 195 RIVQAAMVKLV-TNQTVVIVANCLITIRN-ADCIIMVSKG 232 (632)
Q Consensus 195 ~~i~~~l~~~~-~~~tviiitH~~~~~~~-aD~i~vl~~G 232 (632)
..+.+.|+++. ++.|+|+|||+++.+.. ||+|++|+++
T Consensus 265 ~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 265 LKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp HHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred HHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence 99999999985 47899999999998865 9999999865
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-29 Score=283.30 Aligned_cols=145 Identities=19% Similarity=0.208 Sum_probs=97.6
Q ss_pred EeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHH------hhcceEEE----------------------cccCccccc
Q 047286 89 HVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEA------EQEKIGLV----------------------SKEPIFLFC 140 (632)
Q Consensus 89 ~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~------~r~~i~~v----------------------~Q~~~~~~~ 140 (632)
.+++||+++|+||||||||||+|+|.|+...+... ++..+++. +|....+..
T Consensus 99 ~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (608)
T 3j16_B 99 TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPR 178 (608)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHH
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhhhhhhh
Confidence 46799999999999999999999999753322111 11111111 111000000
Q ss_pred cccc-----ccccccCCCCCCHHHHHHHHHHccchh----hHhhCCcccccccc-----------------cCCCCHHHH
Q 047286 141 DFNE-----GQYIPYGKQNASDEHIRPAVQLANAEK----SIDKLPLGLDTVVA-----------------TNAVDAQSE 194 (632)
Q Consensus 141 ~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~l~~----~i~~l~~g~~~~v~-----------------ts~LD~~~~ 194 (632)
.... .+++... .....+++.++++..++.+ .+.+||+|++++++ |++||+.++
T Consensus 179 ~~~~~~~~v~~~l~~~-~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~ 257 (608)
T 3j16_B 179 AIKGPVQKVGELLKLR-MEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQR 257 (608)
T ss_dssp HCSSSSSHHHHHHHHH-CCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHH
T ss_pred hhcchhhHHHHHHhhh-hhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHH
Confidence 0000 0000000 1124567788888887654 46788999988883 999999999
Q ss_pred HHHHHHHHHHhC-CceEEEEecCchHHhh-cCeEEEEeCCeE
Q 047286 195 RIVQAAMVKLVT-NQTVVIVANCLITIRN-ADCIIMVSKGKI 234 (632)
Q Consensus 195 ~~i~~~l~~~~~-~~tviiitH~~~~~~~-aD~i~vl~~G~i 234 (632)
..+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|..
T Consensus 258 ~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~~ 299 (608)
T 3j16_B 258 LNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPS 299 (608)
T ss_dssp HHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCTT
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcc
Confidence 999999999864 7899999999998875 999999998754
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-29 Score=278.28 Aligned_cols=141 Identities=18% Similarity=0.209 Sum_probs=102.7
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHH--------------------------hhcceEEEcccCcccc
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEA--------------------------EQEKIGLVSKEPIFLF 139 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~--------------------------~r~~i~~v~Q~~~~~~ 139 (632)
+| +|++||+++|+||||||||||+|+|.|....+... .+..+++++|+...+.
T Consensus 41 vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~ 119 (538)
T 1yqt_A 41 LP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIP 119 (538)
T ss_dssp CC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSCGGGSG
T ss_pred cC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhhhhhcc
Confidence 66 78999999999999999999999999753221100 0124778888653322
Q ss_pred c----ccccccccccCCCCCCHHHHHHHHHHccch----hhHhhCCccccccc-----------------ccCCCCHHHH
Q 047286 140 C----DFNEGQYIPYGKQNASDEHIRPAVQLANAE----KSIDKLPLGLDTVV-----------------ATNAVDAQSE 194 (632)
Q Consensus 140 ~----~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~----~~i~~l~~g~~~~v-----------------~ts~LD~~~~ 194 (632)
. +..+ ++.... ..+++.++++..++. ..+.+||+|+++++ +|++||+.++
T Consensus 120 ~~~~~~v~e--~~~~~~---~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~ 194 (538)
T 1yqt_A 120 KAVKGKVIE--LLKKAD---ETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQR 194 (538)
T ss_dssp GGCCSBHHH--HHHHHC---SSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHH
T ss_pred hhhhccHHH--HHhhhh---HHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHH
Confidence 1 2222 222111 123456777777764 35678999999888 3999999999
Q ss_pred HHHHHHHHHHh-CCceEEEEecCchHHhh-cCeEEEEeCC
Q 047286 195 RIVQAAMVKLV-TNQTVVIVANCLITIRN-ADCIIMVSKG 232 (632)
Q Consensus 195 ~~i~~~l~~~~-~~~tviiitH~~~~~~~-aD~i~vl~~G 232 (632)
+.+.+.|+++. .+.|+|+|||++..+.. ||+|++|++|
T Consensus 195 ~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 195 LNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp HHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 99999999885 47899999999998865 9999999854
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-27 Score=237.01 Aligned_cols=170 Identities=36% Similarity=0.548 Sum_probs=139.9
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC---------------CcHHhhcceEEEcccCccccccccccccccc
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY---------------APEAEQEKIGLVSKEPIFLFCDFNEGQYIPY 150 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~---------------~~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~ 150 (632)
+||+|++||+++|+||||||||||+++|.|+... .+..++++++|++|++.+|..++.+ |+.+
T Consensus 28 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~e--nl~~ 105 (247)
T 2ff7_A 28 INLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIID--NISL 105 (247)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHH--HHTT
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCccccccHHH--HHhc
Confidence 9999999999999999999999999999865321 1233567899999999887666655 7777
Q ss_pred CCCCCCHHHHHHHHHHccchhhHhh---------------CCccccccc-----------------ccCCCCHHHHHHHH
Q 047286 151 GKQNASDEHIRPAVQLANAEKSIDK---------------LPLGLDTVV-----------------ATNAVDAQSERIVQ 198 (632)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~l~~~i~~---------------l~~g~~~~v-----------------~ts~LD~~~~~~i~ 198 (632)
+......+++.++++.+++.+.+.. ||+|+++++ +|++||+.+++.++
T Consensus 106 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~ 185 (247)
T 2ff7_A 106 ANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 185 (247)
T ss_dssp TCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 6544567778888888888776654 555555555 39999999999999
Q ss_pred HHHHHHhCCceEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHhcCCCcHHHHHHHH
Q 047286 199 AAMVKLVTNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRL 257 (632)
Q Consensus 199 ~~l~~~~~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~~ 257 (632)
+.|+++.+++|+|++||+++.+..||+|++|++|++++.|+++++...+...|..++..
T Consensus 186 ~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~l~~~ 244 (247)
T 2ff7_A 186 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 244 (247)
T ss_dssp HHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCchHHHHHHHh
Confidence 99999877899999999999887899999999999999999999987656777776643
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-26 Score=232.92 Aligned_cols=171 Identities=38% Similarity=0.553 Sum_probs=138.0
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC--------------CcHHhhcceEEEcccCccccccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY--------------APEAEQEKIGLVSKEPIFLFCDFNEGQYIPY 150 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~--------------~~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~ 150 (632)
.+||+|++|++++|+||||||||||+++|.|+... .+..+++.++|++|++.+|..++.+ |+.+
T Consensus 38 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~e--nl~~ 115 (260)
T 2ghi_A 38 SINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKY--NILY 115 (260)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCSEEHHH--HHHT
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCeEEEECCEEhhhcCHHHHhccEEEEcCCCcccccCHHH--HHhc
Confidence 39999999999999999999999999999865321 1123567899999999888666655 7777
Q ss_pred CCCCCCHHHHHHHHHHccchhhHh---------------hCCccccccc-----------------ccCCCCHHHHHHHH
Q 047286 151 GKQNASDEHIRPAVQLANAEKSID---------------KLPLGLDTVV-----------------ATNAVDAQSERIVQ 198 (632)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~l~~~i~---------------~l~~g~~~~v-----------------~ts~LD~~~~~~i~ 198 (632)
+......+++.++++.+++.+.+. .||+|+++++ +|++||+.+++.++
T Consensus 116 ~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~ 195 (260)
T 2ghi_A 116 GKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQ 195 (260)
T ss_dssp TCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHH
Confidence 644445677788888888766654 4566666655 39999999999999
Q ss_pred HHHHHHhCCceEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHhcCCCcHHHHHHHHH
Q 047286 199 AAMVKLVTNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQ 258 (632)
Q Consensus 199 ~~l~~~~~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~~~ 258 (632)
+.|+++.+++|+|++||+++.+..||+|++|++|++++.|+++++... ...|.+++..+
T Consensus 196 ~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~~ 254 (260)
T 2ghi_A 196 KAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKL-NGEYAEMWNMQ 254 (260)
T ss_dssp HHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHH-TSHHHHHHHHH
T ss_pred HHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhc-ChHHHHHHHhh
Confidence 999998778999999999998878999999999999999999999765 45676666543
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.94 E-value=8.4e-27 Score=232.38 Aligned_cols=168 Identities=31% Similarity=0.489 Sum_probs=135.2
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC---------------cHHhhcceEEEcccCcccccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA---------------PEAEQEKIGLVSKEPIFLFCDFNEGQYIP 149 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~---------------~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~ 149 (632)
.+||+|++||+++|+||||||||||+++|.|+.... +..++++++|++|++.+|..++.+ |+.
T Consensus 20 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~~tv~e--nl~ 97 (243)
T 1mv5_A 20 DISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRE--NLT 97 (243)
T ss_dssp EEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHH--HTT
T ss_pred EeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCccccccHHH--HHh
Confidence 399999999999999999999999999998653211 122467899999999887766655 777
Q ss_pred cC-CCCCCHHHHHHHHHHccchhhHh---------------hCCccccccc-----------------ccCCCCHHHHHH
Q 047286 150 YG-KQNASDEHIRPAVQLANAEKSID---------------KLPLGLDTVV-----------------ATNAVDAQSERI 196 (632)
Q Consensus 150 ~~-~~~~~~~~~~~~~~~~~l~~~i~---------------~l~~g~~~~v-----------------~ts~LD~~~~~~ 196 (632)
++ ......+++.++++.+++.+.++ +||+|+++++ +|++||+.+++.
T Consensus 98 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~ 177 (243)
T 1mv5_A 98 YGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESM 177 (243)
T ss_dssp SCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCH
T ss_pred hhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHH
Confidence 76 33455677888888888876665 4555555555 399999999999
Q ss_pred HHHHHHHHhCCceEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHhcCCCcHHHHHH
Q 047286 197 VQAAMVKLVTNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLV 255 (632)
Q Consensus 197 i~~~l~~~~~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~ 255 (632)
+++.|+++.+++|+|++||+++.+..||+|++|++|++++.|+++++... ...|..++
T Consensus 178 i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~ 235 (243)
T 1mv5_A 178 VQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYV 235 (243)
T ss_dssp HHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH-CHHHHHHH
T ss_pred HHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhc-cHHHHHHH
Confidence 99999998778999999999998888999999999999999999998764 34455554
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=8.2e-26 Score=228.50 Aligned_cols=169 Identities=29% Similarity=0.422 Sum_probs=130.6
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC---------------cHHhhcceEEEcccCccccccccccccccc
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA---------------PEAEQEKIGLVSKEPIFLFCDFNEGQYIPY 150 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~---------------~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~ 150 (632)
+||+|++||+++|+||||||||||+++|+|+.... +..++++++||+|++.+|..++.+ |+.+
T Consensus 38 vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~e--nl~~ 115 (271)
T 2ixe_A 38 LTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRE--NIAY 115 (271)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHH--HHHT
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCccccccHHH--HHhh
Confidence 99999999999999999999999999998653211 123467899999999887766655 7777
Q ss_pred CCCCCCH-HHHHHHHHHccc---------------hhhHhhCCccccccc-----------------ccCCCCHHHHHHH
Q 047286 151 GKQNASD-EHIRPAVQLANA---------------EKSIDKLPLGLDTVV-----------------ATNAVDAQSERIV 197 (632)
Q Consensus 151 ~~~~~~~-~~~~~~~~~~~l---------------~~~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i 197 (632)
+...... +++.++++..++ ++...+||+|+++++ +|++||+.+++.+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i 195 (271)
T 2ixe_A 116 GLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRV 195 (271)
T ss_dssp TCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHH
T ss_pred hcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHH
Confidence 6433222 333333332222 234567778887777 3999999999999
Q ss_pred HHHHHHHhC--CceEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHhcCCCcHHHHHHHH
Q 047286 198 QAAMVKLVT--NQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRL 257 (632)
Q Consensus 198 ~~~l~~~~~--~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~~ 257 (632)
++.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++... ...|.+++..
T Consensus 196 ~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~ 256 (271)
T 2ixe_A 196 QRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMER-GGCYRSMVEA 256 (271)
T ss_dssp HHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHH-TSHHHHHHHC
T ss_pred HHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-cHHHHHHHHH
Confidence 999999854 7899999999998878999999999999999999999765 4667766543
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=99.93 E-value=2.5e-26 Score=239.12 Aligned_cols=167 Identities=22% Similarity=0.369 Sum_probs=133.3
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC---------------cH---HhhcceEEEcccCcccccccccccc
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA---------------PE---AEQEKIGLVSKEPIFLFCDFNEGQY 147 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~---------------~~---~~r~~i~~v~Q~~~~~~~~~~~~~~ 147 (632)
+||+|++||+++|+||||||||||+|+|.|+.... +. ..|++||||||++.++.. .+..+|
T Consensus 47 vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~-~TV~en 125 (366)
T 3tui_C 47 VSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSS-RTVFGN 125 (366)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTT-SCHHHH
T ss_pred eEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCC-CCHHHH
Confidence 99999999999999999999999999998753221 11 246789999999976543 333346
Q ss_pred cccCCC--CCC----HHHHHHHHHHccchhh----HhhCCcccccccc-----------------cCCCCHHHHHHHHHH
Q 047286 148 IPYGKQ--NAS----DEHIRPAVQLANAEKS----IDKLPLGLDTVVA-----------------TNAVDAQSERIVQAA 200 (632)
Q Consensus 148 i~~~~~--~~~----~~~~~~~~~~~~l~~~----i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~~ 200 (632)
+.++.. ... .+++.++++.+++.+. ..+||+|++++++ |++||+.+++.+++.
T Consensus 126 v~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~l 205 (366)
T 3tui_C 126 VALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILEL 205 (366)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHH
Confidence 655321 112 3457788888887654 5678889988883 999999999999999
Q ss_pred HHHHhC--CceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcCCCcHHHH
Q 047286 201 MVKLVT--NQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIEDPEGAYSQ 253 (632)
Q Consensus 201 l~~~~~--~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~~~~~~~~ 253 (632)
|+++.+ +.|+|+|||+++.+.. ||||++|++|+++++|++++++..+...|.+
T Consensus 206 L~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~~~p~~~~~~ 261 (366)
T 3tui_C 206 LKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQ 261 (366)
T ss_dssp HHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHHSSCCSHHHH
T ss_pred HHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCcHHHH
Confidence 999853 7899999999998865 9999999999999999999999887766654
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=8.7e-26 Score=238.31 Aligned_cols=165 Identities=17% Similarity=0.299 Sum_probs=138.6
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCC--------------CCcHHhhcceEEEcccCcccccccccccccccC
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRF--------------YAPEAEQEKIGLVSKEPIFLFCDFNEGQYIPYG 151 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~--------------~~~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~ 151 (632)
+||+|++||+++|+||||||||||+++|.|+.. .++..+++.++||+|++.+|..++.+ |+.+.
T Consensus 40 vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~~tv~e--nl~~~ 117 (390)
T 3gd7_A 40 ISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRK--NLDPN 117 (390)
T ss_dssp EEEEECTTCEEEEEESTTSSHHHHHHHHHTCSEEEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCSEEHHH--HHCTT
T ss_pred eeEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCeEEEECCEECCcCChHHHhCCEEEEcCCcccCccCHHH--Hhhhc
Confidence 999999999999999999999999999987531 12334678899999999988776666 67643
Q ss_pred CCCCCHHHHHHHHHHccchhhHhh---------------CCcccccccc-----------------cCCCCHHHHHHHHH
Q 047286 152 KQNASDEHIRPAVQLANAEKSIDK---------------LPLGLDTVVA-----------------TNAVDAQSERIVQA 199 (632)
Q Consensus 152 ~~~~~~~~~~~~~~~~~l~~~i~~---------------l~~g~~~~v~-----------------ts~LD~~~~~~i~~ 199 (632)
. ....+++.++++.+++.+..++ ||+|++++++ |++||+.+++.+++
T Consensus 118 ~-~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~ 196 (390)
T 3gd7_A 118 A-AHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRR 196 (390)
T ss_dssp C-CSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHH
T ss_pred c-ccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHH
Confidence 3 3467888999999998876654 5666666663 89999999999999
Q ss_pred HHHHHhCCceEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHhcCCCcHHHH
Q 047286 200 AMVKLVTNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQ 253 (632)
Q Consensus 200 ~l~~~~~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~~~~~~~~~ 253 (632)
.|+++.++.|+|++||+++.+..||||++|++|+|++.|+++++.+.+...|..
T Consensus 197 ~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~p~~~~va 250 (390)
T 3gd7_A 197 TLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVA 250 (390)
T ss_dssp HHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHCCSBHHHH
T ss_pred HHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCchHHH
Confidence 999887789999999999888889999999999999999999999887776653
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.6e-25 Score=230.30 Aligned_cols=167 Identities=20% Similarity=0.341 Sum_probs=133.1
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC-----------------cHHhhcceEEEcccCccccccccccccc
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA-----------------PEAEQEKIGLVSKEPIFLFCDFNEGQYI 148 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~-----------------~~~~r~~i~~v~Q~~~~~~~~~~~~~~i 148 (632)
+||+|++||+++|+||||||||||+|+|.|+...+ ....++.+|||+|++.+|. .++..+|+
T Consensus 23 vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p-~ltV~eni 101 (359)
T 3fvq_A 23 ISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFP-HLTVYRNI 101 (359)
T ss_dssp EEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCT-TSCHHHHH
T ss_pred eEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCC-CCCHHHHH
Confidence 99999999999999999999999999998763221 1123567999999997654 34444478
Q ss_pred ccCCCC--C----CHHHHHHHHHHccchh----hHhhCCcccccccc-----------------cCCCCHHHHHHHHHHH
Q 047286 149 PYGKQN--A----SDEHIRPAVQLANAEK----SIDKLPLGLDTVVA-----------------TNAVDAQSERIVQAAM 201 (632)
Q Consensus 149 ~~~~~~--~----~~~~~~~~~~~~~l~~----~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~~l 201 (632)
.++... . ..+++.++++.+++.+ ...+||+|++++++ |++||+..+..+++.+
T Consensus 102 ~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l 181 (359)
T 3fvq_A 102 AYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDM 181 (359)
T ss_dssp HTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHH
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 776431 1 2356778888888754 46788899999883 9999999999999888
Q ss_pred HHHh--CCceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhcCCCcHHHH
Q 047286 202 VKLV--TNQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIEDPEGAYSQ 253 (632)
Q Consensus 202 ~~~~--~~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~~~~~~~~~ 253 (632)
.++. .+.|+|+|||+++.+. .||||++|++|+|++.|+++++...+...+..
T Consensus 182 ~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~p~~~~~a 236 (359)
T 3fvq_A 182 IAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQPADLDAA 236 (359)
T ss_dssp HHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSCHHHH
T ss_pred HHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhCcccHHHH
Confidence 7763 4789999999998875 59999999999999999999998877665543
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-25 Score=226.51 Aligned_cols=160 Identities=18% Similarity=0.323 Sum_probs=127.4
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC-----------------cHHhhcceEEEcccCc--ccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA-----------------PEAEQEKIGLVSKEPI--FLFCDFNEG 145 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~-----------------~~~~r~~i~~v~Q~~~--~~~~~~~~~ 145 (632)
.+||+|++||+++|+||||||||||+++|.|+.... ...+++.+|||+|+|. +|..++.+
T Consensus 26 ~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e- 104 (275)
T 3gfo_A 26 GINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQ- 104 (275)
T ss_dssp EEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHH-
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCcHHH-
Confidence 399999999999999999999999999998653211 1135678999999973 44444444
Q ss_pred cccccCCC--CCC----HHHHHHHHHHccchh----hHhhCCcccccccc-----------------cCCCCHHHHHHHH
Q 047286 146 QYIPYGKQ--NAS----DEHIRPAVQLANAEK----SIDKLPLGLDTVVA-----------------TNAVDAQSERIVQ 198 (632)
Q Consensus 146 ~~i~~~~~--~~~----~~~~~~~~~~~~l~~----~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~ 198 (632)
|+.++.. ... .+++.++++.+++.+ .+.+||+|++++++ |++||+.+++.++
T Consensus 105 -~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~ 183 (275)
T 3gfo_A 105 -DVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIM 183 (275)
T ss_dssp -HHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHH
T ss_pred -HHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHH
Confidence 5655321 122 345677888887754 46788999998883 9999999999999
Q ss_pred HHHHHHh-C-CceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcC
Q 047286 199 AAMVKLV-T-NQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIED 246 (632)
Q Consensus 199 ~~l~~~~-~-~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~ 246 (632)
+.|+++. + +.|+|++||+++.+.. ||+|++|++|+++++|+++++...
T Consensus 184 ~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 234 (275)
T 3gfo_A 184 KLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234 (275)
T ss_dssp HHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTHH
T ss_pred HHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 9999985 3 8899999999998864 999999999999999999998753
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2e-25 Score=233.70 Aligned_cols=168 Identities=18% Similarity=0.320 Sum_probs=134.3
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC-------------cHHhhcceEEEcccCcccccccccccccccC
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA-------------PEAEQEKIGLVSKEPIFLFCDFNEGQYIPYG 151 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~-------------~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~ 151 (632)
.+||+|++||+++|+||||||||||+|+|.|+...+ ....++.+|||+|++.+|. .++..+|+.++
T Consensus 21 ~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p-~ltV~eni~~~ 99 (381)
T 3rlf_A 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYP-HLSVAENMSFG 99 (381)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCT-TSCHHHHHTHH
T ss_pred eeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCC-CCCHHHHHHHH
Confidence 399999999999999999999999999999763221 1113567999999997654 33444477765
Q ss_pred CC--CCC----HHHHHHHHHHccchh----hHhhCCcccccccc-----------------cCCCCHHHHHHHHHHHHHH
Q 047286 152 KQ--NAS----DEHIRPAVQLANAEK----SIDKLPLGLDTVVA-----------------TNAVDAQSERIVQAAMVKL 204 (632)
Q Consensus 152 ~~--~~~----~~~~~~~~~~~~l~~----~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~~l~~~ 204 (632)
.. ... .+++.++++.+++.+ ...+||+|++++++ |++||+..+..+++.|+++
T Consensus 100 ~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l 179 (381)
T 3rlf_A 100 LKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRL 179 (381)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHH
Confidence 21 122 345777888887654 46778899999883 9999999999999999998
Q ss_pred hC--CceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhcCCCcHHHH
Q 047286 205 VT--NQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIEDPEGAYSQ 253 (632)
Q Consensus 205 ~~--~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~~~~~~~~~ 253 (632)
.+ +.|+|+|||+++.+. .||||++|++|+|++.|+++++...+...|..
T Consensus 180 ~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p~~~~v~ 231 (381)
T 3rlf_A 180 HKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVA 231 (381)
T ss_dssp HHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSBHHHH
T ss_pred HHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCccHHHH
Confidence 53 889999999998875 59999999999999999999999887776654
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=99.92 E-value=3.4e-25 Score=218.68 Aligned_cols=159 Identities=19% Similarity=0.282 Sum_probs=124.4
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHH--hhcceEEEcccCcccccccccccccccCCCCCCHHHHHH
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEA--EQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRP 162 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~--~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 162 (632)
.+||+|++|++++|+||||||||||+++|.|+....... +..+++|++|++.+|..++.+ |+.++.. ....+..+
T Consensus 26 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~~~~tv~e--nl~~~~~-~~~~~~~~ 102 (229)
T 2pze_A 26 DINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPGTIKE--NIIFGVS-YDEYRYRS 102 (229)
T ss_dssp EEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCCCSBCHHH--HHHTTSC-CCHHHHHH
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCcccCCCHHH--HhhccCC-cChHHHHH
Confidence 399999999999999999999999999999653322211 234699999999887766655 7777642 23344555
Q ss_pred HHHHccchhhH---------------hhCCccccccc-----------------ccCCCCHHHHHHHHHHH-HHHhCCce
Q 047286 163 AVQLANAEKSI---------------DKLPLGLDTVV-----------------ATNAVDAQSERIVQAAM-VKLVTNQT 209 (632)
Q Consensus 163 ~~~~~~l~~~i---------------~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l-~~~~~~~t 209 (632)
.++.+++.+.+ .+||+|+++++ +|++||+.+++.+.+.+ +++.+++|
T Consensus 103 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~t 182 (229)
T 2pze_A 103 VIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKT 182 (229)
T ss_dssp HHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSE
T ss_pred HHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCE
Confidence 66666655544 46677777666 39999999999999864 55556789
Q ss_pred EEEEecCchHHhhcCeEEEEeCCeEEEecChhHHhcC
Q 047286 210 VVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIED 246 (632)
Q Consensus 210 viiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~~ 246 (632)
+|++||+++.+..||++++|++|++++.|+++++...
T Consensus 183 vi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 219 (229)
T 2pze_A 183 RILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL 219 (229)
T ss_dssp EEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC
T ss_pred EEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999998878999999999999999999998764
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-25 Score=221.51 Aligned_cols=166 Identities=25% Similarity=0.382 Sum_probs=127.3
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHH----hhcceEEEcccCcccccccccccccccCCCCCCHHHH
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEA----EQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHI 160 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~----~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~~~~ 160 (632)
.+||+|++|++++|+||||||||||+++|.|+ +.|.. +..+++|++|+|.++..++.+ |+.++... ..++.
T Consensus 23 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p~~G~I~~~g~i~~v~Q~~~~~~~tv~e--nl~~~~~~-~~~~~ 97 (237)
T 2cbz_A 23 GITFSIPEGALVAVVGQVGCGKSSLLSALLAE--MDKVEGHVAIKGSVAYVPQQAWIQNDSLRE--NILFGCQL-EEPYY 97 (237)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHHHHTTC--SEEEEEEEEECSCEEEECSSCCCCSEEHHH--HHHTTSCC-CTTHH
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHhcC--CCCCCceEEECCEEEEEcCCCcCCCcCHHH--HhhCcccc-CHHHH
Confidence 39999999999999999999999999999854 33332 234699999999876556655 67765421 22233
Q ss_pred HHHHHHccch---------------hhHhhCCccccccc-----------------ccCCCCHHHHHHHHHHHH---HHh
Q 047286 161 RPAVQLANAE---------------KSIDKLPLGLDTVV-----------------ATNAVDAQSERIVQAAMV---KLV 205 (632)
Q Consensus 161 ~~~~~~~~l~---------------~~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l~---~~~ 205 (632)
.++.+.+++. +...+||+|+++++ +|++||+.+++.+++.|. ++.
T Consensus 98 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~ 177 (237)
T 2cbz_A 98 RSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML 177 (237)
T ss_dssp HHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT
T ss_pred HHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc
Confidence 4444444332 33457888888877 399999999999999984 444
Q ss_pred CCceEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHhcCCCcHHHHHHH
Q 047286 206 TNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVR 256 (632)
Q Consensus 206 ~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~ 256 (632)
+++|+|++||+++.+..||++++|++|++++.|+++++... ...|..++.
T Consensus 178 ~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~~ 227 (237)
T 2cbz_A 178 KNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR-DGAFAEFLR 227 (237)
T ss_dssp TTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHH-TSHHHHHHH
T ss_pred CCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhc-cHHHHHHHH
Confidence 57899999999998878999999999999999999998765 456666554
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.6e-25 Score=220.77 Aligned_cols=129 Identities=35% Similarity=0.477 Sum_probs=109.0
Q ss_pred cEEEeeEEEEEecCCCChHHHHHhhhcCCChhh---------h---cHH-------------------------------
Q 047286 501 DIVFEHTVALVGENGNGKSTVISLAERFHNPEQ---------V---IYS------------------------------- 537 (632)
Q Consensus 501 ~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~---~~~------------------------------- 537 (632)
+|.-++++||+||||||||||+++|.|+++|++ + ...
T Consensus 31 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~ 110 (247)
T 2ff7_A 31 SIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGM 110 (247)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHHHHTTTCTTC
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCccccccHHHHHhccCCCC
Confidence 444456999999999999999999999988742 0 000
Q ss_pred --------HHHHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh----------------------------
Q 047286 538 --------WIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY---------------------------- 581 (632)
Q Consensus 538 --------~~~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~---------------------------- 581 (632)
....++.+++..+|+|+++.+++.+.+||||||||++||||++.
T Consensus 111 ~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~ 190 (247)
T 2ff7_A 111 SVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK 190 (247)
T ss_dssp CHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 00124567889999999999999999999999999999999655
Q ss_pred -------hccccchhhhhcCCEEEEEeCCeEeeecChHHHhccCCchhHHHHHhh
Q 047286 582 -------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKITDGTYASLTALH 629 (632)
Q Consensus 582 -------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~~~~ 629 (632)
+++||+++.++.||+|++|++|+|++.|+++++++.+++.|++++..|
T Consensus 191 ~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~l~~~~ 245 (247)
T 2ff7_A 191 ICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 245 (247)
T ss_dssp HHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTSTTCHHHHHHHHH
T ss_pred HcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCchHHHHHHHhh
Confidence 788999999989999999999999999999999975478999998766
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-25 Score=222.30 Aligned_cols=157 Identities=23% Similarity=0.309 Sum_probs=121.8
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC---------------cHH----hhcceEEEcccCccccc-cccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA---------------PEA----EQEKIGLVSKEPIFLFC-DFNE 144 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~---------------~~~----~r~~i~~v~Q~~~~~~~-~~~~ 144 (632)
.+||+|++||+++|+||||||||||+++|.|+.... +.+ .++.+|||+|++.++.. ++.+
T Consensus 23 ~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e 102 (235)
T 3tif_A 23 NVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALE 102 (235)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHH
T ss_pred eeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHH
Confidence 399999999999999999999999999998653221 111 13469999999976653 4544
Q ss_pred ccccccCC-----CCCC----HHHHHHHHHHccchh-----hHhhCCcccccccc-----------------cCCCCHHH
Q 047286 145 GQYIPYGK-----QNAS----DEHIRPAVQLANAEK-----SIDKLPLGLDTVVA-----------------TNAVDAQS 193 (632)
Q Consensus 145 ~~~i~~~~-----~~~~----~~~~~~~~~~~~l~~-----~i~~l~~g~~~~v~-----------------ts~LD~~~ 193 (632)
|+.++. .... .+++.++++.+++.+ ...+||+|++++++ |++||+.+
T Consensus 103 --nl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~ 180 (235)
T 3tif_A 103 --NVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKT 180 (235)
T ss_dssp --HHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHH
T ss_pred --HHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 554421 1112 345667778777643 46789999998883 99999999
Q ss_pred HHHHHHHHHHHhC--CceEEEEecCchHHhhcCeEEEEeCCeEEEecChhHH
Q 047286 194 ERIVQAAMVKLVT--NQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDEL 243 (632)
Q Consensus 194 ~~~i~~~l~~~~~--~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el 243 (632)
++.+++.|+++.+ ++|+|++||+++.++.||+|++|++|++++.++.+++
T Consensus 181 ~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 181 GEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRGF 232 (235)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC--
T ss_pred HHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhhh
Confidence 9999999999853 8999999999997777999999999999999887765
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-24 Score=227.13 Aligned_cols=167 Identities=22% Similarity=0.270 Sum_probs=133.6
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC-------------cHHhhcceEEEcccCcccccccccccccccC
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA-------------PEAEQEKIGLVSKEPIFLFCDFNEGQYIPYG 151 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~-------------~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~ 151 (632)
.+||++++||+++|+||||||||||+++|.|+...+ ....++++|||+|++.+|. .++..+|+.++
T Consensus 21 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~-~ltv~eni~~~ 99 (359)
T 2yyz_A 21 GVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYP-HMTVFENIAFP 99 (359)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCT-TSCHHHHHHGG
T ss_pred eeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecCcccCC-CCCHHHHHHHH
Confidence 399999999999999999999999999999763221 0113567999999987654 34444477775
Q ss_pred CCC--C----CHHHHHHHHHHccchh----hHhhCCcccccccc-----------------cCCCCHHHHHHHHHHHHHH
Q 047286 152 KQN--A----SDEHIRPAVQLANAEK----SIDKLPLGLDTVVA-----------------TNAVDAQSERIVQAAMVKL 204 (632)
Q Consensus 152 ~~~--~----~~~~~~~~~~~~~l~~----~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~~l~~~ 204 (632)
... . ..+++.++++.+++.+ ...+||+|++++++ |++||+.+++.+++.|+++
T Consensus 100 ~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l 179 (359)
T 2yyz_A 100 LRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHL 179 (359)
T ss_dssp GSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 321 1 1346788888888754 45678999998883 9999999999999999998
Q ss_pred hC--CceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhcCCCcHHH
Q 047286 205 VT--NQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIEDPEGAYS 252 (632)
Q Consensus 205 ~~--~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~~~~~~~~ 252 (632)
.+ +.|+|++||+++.+. .||+|++|++|+|++.|+++++...+...|.
T Consensus 180 ~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~~ 230 (359)
T 2yyz_A 180 QQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPKNMFV 230 (359)
T ss_dssp HHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBHHH
T ss_pred HHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcccHHH
Confidence 53 789999999998875 5999999999999999999999887666553
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=99.92 E-value=4.2e-25 Score=221.86 Aligned_cols=163 Identities=23% Similarity=0.325 Sum_probs=128.8
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC-----------------cHHhhcceEEEcccCccccc-ccccccc
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA-----------------PEAEQEKIGLVSKEPIFLFC-DFNEGQY 147 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~-----------------~~~~r~~i~~v~Q~~~~~~~-~~~~~~~ 147 (632)
+||+|++||+++|+||||||||||+++|.|+.... ...++++++||+|++.++.. ++.+ |
T Consensus 43 vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e--~ 120 (263)
T 2olj_A 43 INVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLN--N 120 (263)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHH--H
T ss_pred eEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHHH--H
Confidence 99999999999999999999999999998653211 12346679999999876543 4444 5
Q ss_pred cccCC---CCCC----HHHHHHHHHHccchh----hHhhCCcccccccc-----------------cCCCCHHHHHHHHH
Q 047286 148 IPYGK---QNAS----DEHIRPAVQLANAEK----SIDKLPLGLDTVVA-----------------TNAVDAQSERIVQA 199 (632)
Q Consensus 148 i~~~~---~~~~----~~~~~~~~~~~~l~~----~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~ 199 (632)
+.++. .... .+++.++++.+++.+ .+.+||+|++++++ |++||+.+++.+.+
T Consensus 121 l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~ 200 (263)
T 2olj_A 121 ITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLS 200 (263)
T ss_dssp HHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHH
Confidence 65531 1112 345677888888754 36689999998883 99999999999999
Q ss_pred HHHHHh-CCceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhcCCCcH
Q 047286 200 AMVKLV-TNQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIEDPEGA 250 (632)
Q Consensus 200 ~l~~~~-~~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~~~~~~ 250 (632)
.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+++++...+...
T Consensus 201 ~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~ 253 (263)
T 2olj_A 201 VMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRPQHE 253 (263)
T ss_dssp HHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCCSH
T ss_pred HHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCcccH
Confidence 999985 4789999999999886 49999999999999999999997654433
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.92 E-value=3.6e-25 Score=222.75 Aligned_cols=165 Identities=19% Similarity=0.247 Sum_probs=129.0
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC-------------------------c---HHhhcceEEEcccCcc
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA-------------------------P---EAEQEKIGLVSKEPIF 137 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~-------------------------~---~~~r~~i~~v~Q~~~~ 137 (632)
+||+|++||+++|+||||||||||+++|.|+..+. + ...++.++||+|++.+
T Consensus 25 vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l 104 (262)
T 1b0u_A 25 VSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNL 104 (262)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCC
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEecCccc
Confidence 99999999999999999999999999998653211 0 1245679999999876
Q ss_pred cccccccccccccCC---CCCC----HHHHHHHHHHccchhh-----HhhCCcccccccc-----------------cCC
Q 047286 138 LFCDFNEGQYIPYGK---QNAS----DEHIRPAVQLANAEKS-----IDKLPLGLDTVVA-----------------TNA 188 (632)
Q Consensus 138 ~~~~~~~~~~i~~~~---~~~~----~~~~~~~~~~~~l~~~-----i~~l~~g~~~~v~-----------------ts~ 188 (632)
+.. ++..+|+.++. .... .+++.++++.+++.+. +.+||+|++++++ |++
T Consensus 105 ~~~-ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~ 183 (262)
T 1b0u_A 105 WSH-MTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSA 183 (262)
T ss_dssp CTT-SCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTT
T ss_pred CCC-CcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 543 33333665521 1112 3456778888887654 5678999988883 999
Q ss_pred CCHHHHHHHHHHHHHHh-CCceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhcCCCcHH
Q 047286 189 VDAQSERIVQAAMVKLV-TNQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIEDPEGAY 251 (632)
Q Consensus 189 LD~~~~~~i~~~l~~~~-~~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~~~~~~~ 251 (632)
||+.+++.+.+.|+++. ++.|+|++||+++.+. .||+|++|++|++++.|+++++...+...+
T Consensus 184 LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~ 248 (262)
T 1b0u_A 184 LDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGNPQSPR 248 (262)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCCSHH
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcchHH
Confidence 99999999999999985 4789999999999886 599999999999999999999986544333
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.3e-24 Score=226.10 Aligned_cols=167 Identities=20% Similarity=0.292 Sum_probs=129.3
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCc-------------HHhhcceEEEcccCcccccccccccccccC
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAP-------------EAEQEKIGLVSKEPIFLFCDFNEGQYIPYG 151 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~-------------~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~ 151 (632)
.+||+|++||+++|+||||||||||+|+|.|+...+. ...++++|||+|++.+|. .++..+|+.++
T Consensus 29 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~-~ltv~eni~~~ 107 (372)
T 1v43_A 29 KLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWP-HMTVYENIAFP 107 (372)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC-------CCCHHHHHHTT
T ss_pred eeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCC-CCCHHHHHHHH
Confidence 3999999999999999999999999999997632210 113567999999987654 44444478776
Q ss_pred CCC--CC----HHHHHHHHHHccchhh----HhhCCcccccccc-----------------cCCCCHHHHHHHHHHHHHH
Q 047286 152 KQN--AS----DEHIRPAVQLANAEKS----IDKLPLGLDTVVA-----------------TNAVDAQSERIVQAAMVKL 204 (632)
Q Consensus 152 ~~~--~~----~~~~~~~~~~~~l~~~----i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~~l~~~ 204 (632)
... .. .+++.++++.+++.+. ..+||+|++++++ |++||+..++.+.+.|+++
T Consensus 108 ~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l 187 (372)
T 1v43_A 108 LKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKL 187 (372)
T ss_dssp CC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence 431 22 2457788888887544 5678999999884 9999999999999999998
Q ss_pred hC--CceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhcCCCcHHH
Q 047286 205 VT--NQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIEDPEGAYS 252 (632)
Q Consensus 205 ~~--~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~~~~~~~~ 252 (632)
.+ +.|+|++||+++.+. .||+|++|++|+|++.|+++++...+...|.
T Consensus 188 ~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~~ 238 (372)
T 1v43_A 188 QQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFV 238 (372)
T ss_dssp HHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSBHHH
T ss_pred HHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcccHHH
Confidence 53 789999999998875 5999999999999999999999887666553
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-24 Score=226.81 Aligned_cols=167 Identities=19% Similarity=0.292 Sum_probs=133.4
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC------------------cHHhhcceEEEcccCccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA------------------PEAEQEKIGLVSKEPIFLFCDFNEGQ 146 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~------------------~~~~r~~i~~v~Q~~~~~~~~~~~~~ 146 (632)
.+||+|++||+++|+||||||||||+++|.|+...+ ....++++|||+|++.+|. .++..+
T Consensus 23 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~-~ltv~e 101 (353)
T 1oxx_K 23 NVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYP-NLTAFE 101 (353)
T ss_dssp EEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCT-TSCHHH
T ss_pred ceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCC-CCCHHH
Confidence 399999999999999999999999999998763221 1123567999999987654 344444
Q ss_pred ccccCCC--CCC----HHHHHHHHHHccchh----hHhhCCcccccccc-----------------cCCCCHHHHHHHHH
Q 047286 147 YIPYGKQ--NAS----DEHIRPAVQLANAEK----SIDKLPLGLDTVVA-----------------TNAVDAQSERIVQA 199 (632)
Q Consensus 147 ~i~~~~~--~~~----~~~~~~~~~~~~l~~----~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~ 199 (632)
|+.++.. ... .+++.++++.+++.+ ...+||+|++++++ |++||+.+++.+.+
T Consensus 102 ni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~ 181 (353)
T 1oxx_K 102 NIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARA 181 (353)
T ss_dssp HHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHH
Confidence 7776532 112 345778888888754 46688999998883 99999999999999
Q ss_pred HHHHHhC--CceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhcCCCcHHH
Q 047286 200 AMVKLVT--NQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIEDPEGAYS 252 (632)
Q Consensus 200 ~l~~~~~--~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~~~~~~~~ 252 (632)
.|+++.+ +.|+|++||+++.+. .||+|++|++|++++.|+++++...+...+.
T Consensus 182 ~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~~ 237 (353)
T 1oxx_K 182 LVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQV 237 (353)
T ss_dssp HHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSSHHH
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcccHHH
Confidence 9999853 789999999998875 5999999999999999999999887655543
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=99.91 E-value=9.1e-25 Score=227.47 Aligned_cols=166 Identities=22% Similarity=0.343 Sum_probs=132.4
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC-------------cHHhhcceEEEcccCcccccccccccccccC
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA-------------PEAEQEKIGLVSKEPIFLFCDFNEGQYIPYG 151 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~-------------~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~ 151 (632)
.+||+|++||+++|+||||||||||+|+|.|+...+ ....++.+|||+|++.+|. .++..+|+.++
T Consensus 33 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~-~ltv~eni~~~ 111 (355)
T 1z47_A 33 GVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQ-HMTVYDNVSFG 111 (355)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCT-TSCHHHHHHHH
T ss_pred eeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCC-CCCHHHHHHHH
Confidence 399999999999999999999999999999763221 1123678999999987654 34444477664
Q ss_pred CC--CCC----HHHHHHHHHHccchh----hHhhCCcccccccc-----------------cCCCCHHHHHHHHHHHHHH
Q 047286 152 KQ--NAS----DEHIRPAVQLANAEK----SIDKLPLGLDTVVA-----------------TNAVDAQSERIVQAAMVKL 204 (632)
Q Consensus 152 ~~--~~~----~~~~~~~~~~~~l~~----~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~~l~~~ 204 (632)
.. ... .+++.++++.+++.+ ...+||+|++++++ |++||+.+++.+++.|+++
T Consensus 112 l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l 191 (355)
T 1z47_A 112 LREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQV 191 (355)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 21 112 346778888888754 46678999998883 9999999999999999998
Q ss_pred hC--CceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhcCCCcHH
Q 047286 205 VT--NQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIEDPEGAY 251 (632)
Q Consensus 205 ~~--~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~~~~~~~ 251 (632)
.+ +.|+|++||+++.+. .||+|++|++|+|++.|+++++...+...+
T Consensus 192 ~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~ 241 (355)
T 1z47_A 192 HDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPGTLF 241 (355)
T ss_dssp HHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSSHH
T ss_pred HHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccchH
Confidence 53 789999999998875 499999999999999999999987765544
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.91 E-value=9.1e-25 Score=228.30 Aligned_cols=167 Identities=25% Similarity=0.307 Sum_probs=132.7
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCc-------------HHhhcceEEEcccCcccccccccccccccC
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAP-------------EAEQEKIGLVSKEPIFLFCDFNEGQYIPYG 151 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~-------------~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~ 151 (632)
.+||++++||+++|+||||||||||+|+|.|+...+. ...++++|||+|++.+|. .++..+|+.++
T Consensus 21 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~-~ltv~eni~~~ 99 (362)
T 2it1_A 21 NINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYP-HMTVYKNIAFP 99 (362)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCT-TSCHHHHHHHH
T ss_pred eeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCC-CCCHHHHHHHH
Confidence 3999999999999999999999999999997632210 113567999999987654 34444477664
Q ss_pred CC--CCC----HHHHHHHHHHccchh----hHhhCCcccccccc-----------------cCCCCHHHHHHHHHHHHHH
Q 047286 152 KQ--NAS----DEHIRPAVQLANAEK----SIDKLPLGLDTVVA-----------------TNAVDAQSERIVQAAMVKL 204 (632)
Q Consensus 152 ~~--~~~----~~~~~~~~~~~~l~~----~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~~l~~~ 204 (632)
.. ... .+++.++++.+++.+ ...+||+|++++++ |++||+.+++.+.+.|+++
T Consensus 100 ~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l 179 (362)
T 2it1_A 100 LELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRL 179 (362)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHH
Confidence 21 112 345778888888754 46789999999883 9999999999999999998
Q ss_pred hC--CceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhcCCCcHHH
Q 047286 205 VT--NQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIEDPEGAYS 252 (632)
Q Consensus 205 ~~--~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~~~~~~~~ 252 (632)
.+ +.|+|++||+++.+. .||+|++|++|+|++.|+++++...+...|.
T Consensus 180 ~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~p~~~~~ 230 (362)
T 2it1_A 180 QKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKPKYKFV 230 (362)
T ss_dssp HHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBHHH
T ss_pred HHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccchHH
Confidence 53 789999999998875 5999999999999999999999887665553
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=99.91 E-value=1e-24 Score=227.02 Aligned_cols=166 Identities=21% Similarity=0.314 Sum_probs=133.0
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC-------------cHHhhcceEEEcccCcccccccccccccccC
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA-------------PEAEQEKIGLVSKEPIFLFCDFNEGQYIPYG 151 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~-------------~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~ 151 (632)
.+||++++||+++|+||||||||||+|+|.|+...+ ....++++|||+|++.+|. .++..+|+.++
T Consensus 18 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~-~ltv~enl~~~ 96 (348)
T 3d31_A 18 NLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFP-HMNVKKNLEFG 96 (348)
T ss_dssp EEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCT-TSCHHHHHHHH
T ss_pred eeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCC-CCCHHHHHHHH
Confidence 399999999999999999999999999999763221 1124678999999987654 33434477664
Q ss_pred CC---CCCHHHHHHHHHHccchh----hHhhCCcccccccc-----------------cCCCCHHHHHHHHHHHHHHhC-
Q 047286 152 KQ---NASDEHIRPAVQLANAEK----SIDKLPLGLDTVVA-----------------TNAVDAQSERIVQAAMVKLVT- 206 (632)
Q Consensus 152 ~~---~~~~~~~~~~~~~~~l~~----~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~~l~~~~~- 206 (632)
.. ....+++.++++.+++.+ ...+||+|++++++ |++||+.+++.+.+.|+++.+
T Consensus 97 ~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~ 176 (348)
T 3d31_A 97 MRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKK 176 (348)
T ss_dssp HHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHh
Confidence 21 112377888999888754 46788999998883 999999999999999999853
Q ss_pred -CceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhcCCCcHH
Q 047286 207 -NQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIEDPEGAY 251 (632)
Q Consensus 207 -~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~~~~~~~ 251 (632)
+.|+|++||+++.+. .||+|++|++|++++.|+++++...+...+
T Consensus 177 ~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p~~~~ 223 (348)
T 3d31_A 177 NKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGR 223 (348)
T ss_dssp TTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTH
T ss_pred cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCcccHH
Confidence 789999999998775 599999999999999999999987765544
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-24 Score=216.70 Aligned_cols=158 Identities=19% Similarity=0.243 Sum_probs=123.3
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC---------------cHH-hhcceEEEcccCccccc-cccccccc
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA---------------PEA-EQEKIGLVSKEPIFLFC-DFNEGQYI 148 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~---------------~~~-~r~~i~~v~Q~~~~~~~-~~~~~~~i 148 (632)
+||++++||+++|+||||||||||+++|.|+.... +.. .++.++|++|++.+|.. ++.+ |+
T Consensus 25 vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e--nl 102 (240)
T 1ji0_A 25 IDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYE--NL 102 (240)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHH--HH
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHH--HH
Confidence 99999999999999999999999999998653211 111 24459999999976654 5544 66
Q ss_pred ccCC-C--CCC--HHHHHHHHHHcc-ch----hhHhhCCcccccccc-----------------cCCCCHHHHHHHHHHH
Q 047286 149 PYGK-Q--NAS--DEHIRPAVQLAN-AE----KSIDKLPLGLDTVVA-----------------TNAVDAQSERIVQAAM 201 (632)
Q Consensus 149 ~~~~-~--~~~--~~~~~~~~~~~~-l~----~~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~~l 201 (632)
.++. . ... .+.+.++++..+ +. +...+||+|++++++ |++||+.+++.+++.|
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l 182 (240)
T 1ji0_A 103 MMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVI 182 (240)
T ss_dssp HGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHH
T ss_pred HHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 5542 1 111 244566666663 54 346678999988883 9999999999999999
Q ss_pred HHHh-CCceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhc
Q 047286 202 VKLV-TNQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIE 245 (632)
Q Consensus 202 ~~~~-~~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~ 245 (632)
+++. +++|+|++||+++.+. .||++++|++|++++.|+++++.+
T Consensus 183 ~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 228 (240)
T 1ji0_A 183 QKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228 (240)
T ss_dssp HHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred HHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhc
Confidence 9985 5789999999998765 599999999999999999999864
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.91 E-value=2e-24 Score=214.16 Aligned_cols=161 Identities=23% Similarity=0.315 Sum_probs=127.7
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC-------------cHHhhcceEEEcccCcccccccccccccccC
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA-------------PEAEQEKIGLVSKEPIFLFCDFNEGQYIPYG 151 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~-------------~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~ 151 (632)
.+||++++ |+++|+||||||||||+++|.|+..+. ....+++++|++|++.++.. ++..+|+.++
T Consensus 17 ~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~-ltv~enl~~~ 94 (240)
T 2onk_A 17 NVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPH-LSVYRNIAYG 94 (240)
T ss_dssp EEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTT-SCHHHHHHTT
T ss_pred eeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCC-CcHHHHHHHH
Confidence 39999999 999999999999999999998763221 11235679999999876543 3333367665
Q ss_pred CCCC----CHHHHHHHHHHccchh----hHhhCCcccccccc-----------------cCCCCHHHHHHHHHHHHHHhC
Q 047286 152 KQNA----SDEHIRPAVQLANAEK----SIDKLPLGLDTVVA-----------------TNAVDAQSERIVQAAMVKLVT 206 (632)
Q Consensus 152 ~~~~----~~~~~~~~~~~~~l~~----~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~~l~~~~~ 206 (632)
.... ..+++.++++..++.+ .+.+||+|++++++ |++||+.+++.+++.|+++.+
T Consensus 95 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~ 174 (240)
T 2onk_A 95 LRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQR 174 (240)
T ss_dssp CTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 3211 1355777888887654 46789999998883 999999999999999999853
Q ss_pred --CceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhcCC
Q 047286 207 --NQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIEDP 247 (632)
Q Consensus 207 --~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~~~ 247 (632)
++|+|++||+++.+. .||++++|++|++++.|+++++...+
T Consensus 175 ~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 218 (240)
T 2onk_A 175 EFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAK 218 (240)
T ss_dssp HHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 789999999998875 59999999999999999999987654
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-24 Score=217.87 Aligned_cols=129 Identities=35% Similarity=0.455 Sum_probs=107.6
Q ss_pred cEEEeeEEEEEecCCCChHHHHHhhhcCCChhh--------h---cHHH-------------------------------
Q 047286 501 DIVFEHTVALVGENGNGKSTVISLAERFHNPEQ--------V---IYSW------------------------------- 538 (632)
Q Consensus 501 ~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~--------~---~~~~------------------------------- 538 (632)
+|+-++++||+||||||||||+++|.|+++|.. + ....
T Consensus 42 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~ 121 (260)
T 2ghi_A 42 FIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDAT 121 (260)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCSEEHHHHHHTTCTTCC
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhccCCCCeEEEECCEEhhhcCHHHHhccEEEEcCCCcccccCHHHHHhccCCCCC
Confidence 344446999999999999999999999987521 0 0000
Q ss_pred --H------HHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh-----------------------------
Q 047286 539 --I------IIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY----------------------------- 581 (632)
Q Consensus 539 --~------~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~----------------------------- 581 (632)
. ..++.+++..+|+|+||.+++.+.+||||||||++||||++.
T Consensus 122 ~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l 201 (260)
T 2ghi_A 122 DEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDL 201 (260)
T ss_dssp HHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHh
Confidence 0 113456777899999999999999999999999999999655
Q ss_pred ------hccccchhhhhcCCEEEEEeCCeEeeecChHHHhccCCchhHHHHHhhh
Q 047286 582 ------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKITDGTYASLTALHM 630 (632)
Q Consensus 582 ------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~~~~~ 630 (632)
+++||+++.++.||+|++|++|+|++.|+++++++. ++.|++++..|.
T Consensus 202 ~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~~~ 255 (260)
T 2ghi_A 202 RKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKL-NGEYAEMWNMQS 255 (260)
T ss_dssp TTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHH-TSHHHHHHHHHH
T ss_pred cCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhc-ChHHHHHHHhhh
Confidence 688999999989999999999999999999999987 899999998764
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.1e-24 Score=216.23 Aligned_cols=158 Identities=23% Similarity=0.357 Sum_probs=126.2
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC---------------CcHHhhcceEEEcccCcccc-cccccccccc
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY---------------APEAEQEKIGLVSKEPIFLF-CDFNEGQYIP 149 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~---------------~~~~~r~~i~~v~Q~~~~~~-~~~~~~~~i~ 149 (632)
+||+|++||+++|+||||||||||+|+|.|+... .+...++.++|++|++.+++ .++.+ |+.
T Consensus 30 vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e--~l~ 107 (266)
T 4g1u_C 30 VSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSE--VIQ 107 (266)
T ss_dssp EEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHH--HHH
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHH--HHH
Confidence 9999999999999999999999999999865321 12335677999999987543 34444 666
Q ss_pred cCCC----CCCHHHHHHHHHHccch----hhHhhCCccccccc-----------------------ccCCCCHHHHHHHH
Q 047286 150 YGKQ----NASDEHIRPAVQLANAE----KSIDKLPLGLDTVV-----------------------ATNAVDAQSERIVQ 198 (632)
Q Consensus 150 ~~~~----~~~~~~~~~~~~~~~l~----~~i~~l~~g~~~~v-----------------------~ts~LD~~~~~~i~ 198 (632)
++.. ....+++.++++.+++. +.+.+||+|+++++ +|++||+.+++.+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~ 187 (266)
T 4g1u_C 108 MGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTL 187 (266)
T ss_dssp GGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHH
T ss_pred hhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHH
Confidence 5432 22356678888888764 34677899987665 28999999999999
Q ss_pred HHHHHHhC--CceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhc
Q 047286 199 AAMVKLVT--NQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIE 245 (632)
Q Consensus 199 ~~l~~~~~--~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~ 245 (632)
+.|+++.+ +.|+|++||+++.+. .||+|++|++|+++++|+++++..
T Consensus 188 ~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 237 (266)
T 4g1u_C 188 RLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLN 237 (266)
T ss_dssp HHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHCC
T ss_pred HHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHhC
Confidence 99999853 469999999999886 599999999999999999999864
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=99.91 E-value=3.5e-24 Score=225.14 Aligned_cols=167 Identities=20% Similarity=0.308 Sum_probs=132.6
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC-------------------cHHhhcceEEEcccCcccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA-------------------PEAEQEKIGLVSKEPIFLFCDFNEG 145 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~-------------------~~~~r~~i~~v~Q~~~~~~~~~~~~ 145 (632)
.+||+|++||+++|+||||||||||+|+|.|+...+ ....++++|||+|++.+|. .++..
T Consensus 21 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~-~ltv~ 99 (372)
T 1g29_1 21 EMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYP-HMTVY 99 (372)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCT-TSCHH
T ss_pred eeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCccCC-CCCHH
Confidence 399999999999999999999999999998763211 1113567999999987654 34444
Q ss_pred cccccCCC--CCC----HHHHHHHHHHccchh----hHhhCCcccccccc-----------------cCCCCHHHHHHHH
Q 047286 146 QYIPYGKQ--NAS----DEHIRPAVQLANAEK----SIDKLPLGLDTVVA-----------------TNAVDAQSERIVQ 198 (632)
Q Consensus 146 ~~i~~~~~--~~~----~~~~~~~~~~~~l~~----~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~ 198 (632)
+|+.++.. ... .+++.++++.+++.+ ...+||+|++++++ |++||+.+++.++
T Consensus 100 eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~ 179 (372)
T 1g29_1 100 DNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMR 179 (372)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHH
Confidence 47766421 112 345778888887754 46688999999884 9999999999999
Q ss_pred HHHHHHhC--CceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhcCCCcHHH
Q 047286 199 AAMVKLVT--NQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIEDPEGAYS 252 (632)
Q Consensus 199 ~~l~~~~~--~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~~~~~~~~ 252 (632)
+.|+++.+ +.|+|++||+++.+. .||+|++|++|++++.|+++++...+...|.
T Consensus 180 ~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~~ 236 (372)
T 1g29_1 180 AELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTFV 236 (372)
T ss_dssp HHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBHHH
T ss_pred HHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHHhCcccHHH
Confidence 99999853 789999999998875 5999999999999999999999887666553
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.91 E-value=2e-24 Score=216.10 Aligned_cols=158 Identities=20% Similarity=0.286 Sum_probs=125.9
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHH--hhcceEEEcccCcccc-cccccccccccCCC--------
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEA--EQEKIGLVSKEPIFLF-CDFNEGQYIPYGKQ-------- 153 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~--~r~~i~~v~Q~~~~~~-~~~~~~~~i~~~~~-------- 153 (632)
.+||+|++||+++|+||||||||||+++|.|+....... .++.++|++|++.++. .++.+ |+.++..
T Consensus 23 ~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~e--nl~~~~~~~~~~~~~ 100 (253)
T 2nq2_C 23 QLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLD--IVLMGRSTHINTFAK 100 (253)
T ss_dssp EEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBHHH--HHHGGGGGGSCTTCC
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCHHH--HHHHhhhhhcccccC
Confidence 399999999999999999999999999999654332222 3567999999987653 34444 5655421
Q ss_pred --CCCHHHHHHHHHHccchh----hHhhCCcccccccc-----------------cCCCCHHHHHHHHHHHHHHhC--Cc
Q 047286 154 --NASDEHIRPAVQLANAEK----SIDKLPLGLDTVVA-----------------TNAVDAQSERIVQAAMVKLVT--NQ 208 (632)
Q Consensus 154 --~~~~~~~~~~~~~~~l~~----~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~~l~~~~~--~~ 208 (632)
....+++.++++.+++.+ .+.+||+|++++++ |++||+.+++.+.+.|+++.+ ++
T Consensus 101 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~ 180 (253)
T 2nq2_C 101 PKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNM 180 (253)
T ss_dssp CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCC
T ss_pred CCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 011345778888888754 46689999998883 999999999999999999853 78
Q ss_pred eEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhc
Q 047286 209 TVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIE 245 (632)
Q Consensus 209 tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~ 245 (632)
|+|++||+++.+. .||++++|++|+ ++.|+++++..
T Consensus 181 tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~~ 217 (253)
T 2nq2_C 181 TVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNILT 217 (253)
T ss_dssp EEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHCC
T ss_pred EEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHhC
Confidence 9999999999885 599999999999 99999998853
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.91 E-value=2.3e-24 Score=215.77 Aligned_cols=158 Identities=21% Similarity=0.353 Sum_probs=126.7
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC--------------cHHhhcceEEEcccCccccc-cccccccccc
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA--------------PEAEQEKIGLVSKEPIFLFC-DFNEGQYIPY 150 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~--------------~~~~r~~i~~v~Q~~~~~~~-~~~~~~~i~~ 150 (632)
+||++++||+++|+||||||||||+++|.|+..+. +...+++++|++|++.++.. ++.+ |+.+
T Consensus 34 vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e--nl~~ 111 (256)
T 1vpl_A 34 ISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIE--YLRF 111 (256)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHH--HHHH
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHH--HHHH
Confidence 99999999999999999999999999998763221 12356789999999876543 4444 5654
Q ss_pred CCC--CCC----HHHHHHHHHHccchh----hHhhCCcccccccc-----------------cCCCCHHHHHHHHHHHHH
Q 047286 151 GKQ--NAS----DEHIRPAVQLANAEK----SIDKLPLGLDTVVA-----------------TNAVDAQSERIVQAAMVK 203 (632)
Q Consensus 151 ~~~--~~~----~~~~~~~~~~~~l~~----~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~~l~~ 203 (632)
+.. ... .+++.++++.+++.+ .+.+||+|++++++ |++||+.+++.+++.|++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~ 191 (256)
T 1vpl_A 112 VAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQ 191 (256)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHH
Confidence 310 112 245677888887754 46689999998883 999999999999999999
Q ss_pred Hh-CCceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhc
Q 047286 204 LV-TNQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIE 245 (632)
Q Consensus 204 ~~-~~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~ 245 (632)
+. +++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 192 l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 192 ASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp HHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 85 47899999999998876 99999999999999999999864
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.91 E-value=1e-24 Score=217.34 Aligned_cols=129 Identities=29% Similarity=0.467 Sum_probs=107.8
Q ss_pred cEEEeeEEEEEecCCCChHHHHHhhhcCCChhh---------------------------------------hcH-----
Q 047286 501 DIVFEHTVALVGENGNGKSTVISLAERFHNPEQ---------------------------------------VIY----- 536 (632)
Q Consensus 501 ~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------------------------------------~~~----- 536 (632)
+|+-++++||+||||||||||+++|.|+++|++ +..
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~ 103 (243)
T 1mv5_A 24 EAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGD 103 (243)
T ss_dssp EECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHHHTTSCTTSC
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCccccccHHHHHhhhccCC
Confidence 444456999999999999999999999988732 000
Q ss_pred --HHH------HHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh---------------------------
Q 047286 537 --SWI------IIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY--------------------------- 581 (632)
Q Consensus 537 --~~~------~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~--------------------------- 581 (632)
... ..++.+++..+|.|+++.+++.+.+||||||||++||||++.
T Consensus 104 ~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~ 183 (243)
T 1mv5_A 104 YTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALD 183 (243)
T ss_dssp SCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHH
T ss_pred CCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence 000 113456778899999999999999999999999999999655
Q ss_pred --------hccccchhhhhcCCEEEEEeCCeEeeecChHHHhccCCchhHHHHHhhh
Q 047286 582 --------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKITDGTYASLTALHM 630 (632)
Q Consensus 582 --------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~~~~~ 630 (632)
+++||+++.++.||+|++|++|+|++.|+++++++. .+.|++++..+.
T Consensus 184 ~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~~~~~ 239 (243)
T 1mv5_A 184 SLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVSEQL 239 (243)
T ss_dssp HHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH-CHHHHHHHHCCC
T ss_pred HhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhc-cHHHHHHHHhhh
Confidence 678999999989999999999999999999999987 788999987654
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.91 E-value=6.3e-24 Score=214.29 Aligned_cols=160 Identities=21% Similarity=0.284 Sum_probs=128.4
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCc------------HHhhcceEEEcccC--ccccccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAP------------EAEQEKIGLVSKEP--IFLFCDFNEGQYIPY 150 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~------------~~~r~~i~~v~Q~~--~~~~~~~~~~~~i~~ 150 (632)
.+||+|++||+++|+||||||||||+++|.|+..... ...++.++|++|+| .++..++.+ |+.+
T Consensus 25 ~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e--nl~~ 102 (266)
T 2yz2_A 25 NVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFD--EVAF 102 (266)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHH--HHHH
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHH--HHHH
Confidence 3999999999999999999999999999986632210 13467899999996 334445544 6655
Q ss_pred CCC-----CCCHHHHHHHHHHccch--hh----HhhCCcccccccc-----------------cCCCCHHHHHHHHHHHH
Q 047286 151 GKQ-----NASDEHIRPAVQLANAE--KS----IDKLPLGLDTVVA-----------------TNAVDAQSERIVQAAMV 202 (632)
Q Consensus 151 ~~~-----~~~~~~~~~~~~~~~l~--~~----i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~~l~ 202 (632)
+.. ....+++.++++.+++. +. +.+||+|++++++ |++||+.+++.+.+.|+
T Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~ 182 (266)
T 2yz2_A 103 AVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVE 182 (266)
T ss_dssp TTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHH
Confidence 421 22356788899998886 44 5678899988883 99999999999999999
Q ss_pred HHh-CCceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcC
Q 047286 203 KLV-TNQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIED 246 (632)
Q Consensus 203 ~~~-~~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~ 246 (632)
++. +++|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 183 ~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 228 (266)
T 2yz2_A 183 KWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228 (266)
T ss_dssp HHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 985 57899999999998875 999999999999999999998654
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-23 Score=209.76 Aligned_cols=159 Identities=17% Similarity=0.250 Sum_probs=128.0
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC--------------CcHHhhcceEEEcccCccccc-ccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY--------------APEAEQEKIGLVSKEPIFLFC-DFNEGQYIP 149 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~--------------~~~~~r~~i~~v~Q~~~~~~~-~~~~~~~i~ 149 (632)
.+||++++||+++|+||||||||||+++|.|+... .+..++++++|++|++.++.. ++.+ |+.
T Consensus 18 ~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e--~l~ 95 (249)
T 2qi9_C 18 PLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWH--YLT 95 (249)
T ss_dssp EEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHH--HHH
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCeEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHH--HHH
Confidence 38999999999999999999999999999876322 122346679999999976543 4444 676
Q ss_pred cCCC-CCCHHHHHHHHHHccchhh----HhhCCccccccc------------------------ccCCCCHHHHHHHHHH
Q 047286 150 YGKQ-NASDEHIRPAVQLANAEKS----IDKLPLGLDTVV------------------------ATNAVDAQSERIVQAA 200 (632)
Q Consensus 150 ~~~~-~~~~~~~~~~~~~~~l~~~----i~~l~~g~~~~v------------------------~ts~LD~~~~~~i~~~ 200 (632)
++.. ....+++.++++..++.+. ..+||+|+++++ +|++||+.+++.+.+.
T Consensus 96 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~ 175 (249)
T 2qi9_C 96 LHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKI 175 (249)
T ss_dssp TTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHH
T ss_pred HhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHH
Confidence 6531 1236778889998887543 567888886655 3899999999999999
Q ss_pred HHHHh-CCceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhc
Q 047286 201 MVKLV-TNQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIE 245 (632)
Q Consensus 201 l~~~~-~~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~ 245 (632)
|+++. +++|+|++||+++.+. .||++++|++|++++.|+++++..
T Consensus 176 l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 176 LSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp HHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred HHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99985 5789999999999885 599999999999999999999863
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.6e-24 Score=215.10 Aligned_cols=155 Identities=21% Similarity=0.254 Sum_probs=123.1
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC---------------c-HHhhcceEEEcccCcccc-ccccccccc
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA---------------P-EAEQEKIGLVSKEPIFLF-CDFNEGQYI 148 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~---------------~-~~~r~~i~~v~Q~~~~~~-~~~~~~~~i 148 (632)
+||++++||+++|+||||||||||+|+|.|+.... + ...++.++||+|++.++. .++.+ |+
T Consensus 26 vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e--nl 103 (257)
T 1g6h_A 26 VSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLE--NL 103 (257)
T ss_dssp ECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHH--HH
T ss_pred eEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHH--HH
Confidence 89999999999999999999999999998653211 1 123567999999987654 24444 56
Q ss_pred ccCCC----C-----------C-C---HHHHHHHHHHccchh----hHhhCCcccccccc-----------------cCC
Q 047286 149 PYGKQ----N-----------A-S---DEHIRPAVQLANAEK----SIDKLPLGLDTVVA-----------------TNA 188 (632)
Q Consensus 149 ~~~~~----~-----------~-~---~~~~~~~~~~~~l~~----~i~~l~~g~~~~v~-----------------ts~ 188 (632)
.++.. . . . .+++.++++..++.+ .+.+||+|++++++ |++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~ 183 (257)
T 1g6h_A 104 LIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAG 183 (257)
T ss_dssp HGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTT
T ss_pred HHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccC
Confidence 55321 1 1 1 245677888887654 46789999998883 999
Q ss_pred CCHHHHHHHHHHHHHHh-CCceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhH
Q 047286 189 VDAQSERIVQAAMVKLV-TNQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDE 242 (632)
Q Consensus 189 LD~~~~~~i~~~l~~~~-~~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~e 242 (632)
||+.+++.+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|++++
T Consensus 184 LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 184 VAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239 (257)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeCHHH
Confidence 99999999999999985 4789999999998875 599999999999999999888
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-23 Score=242.92 Aligned_cols=77 Identities=31% Similarity=0.437 Sum_probs=68.9
Q ss_pred hhHhhCCccccccc-------------------ccCCCCHHHHHHHHHHHHHHhC-CceEEEEecCchHHhhcCeEEEE-
Q 047286 171 KSIDKLPLGLDTVV-------------------ATNAVDAQSERIVQAAMVKLVT-NQTVVIVANCLITIRNADCIIMV- 229 (632)
Q Consensus 171 ~~i~~l~~g~~~~v-------------------~ts~LD~~~~~~i~~~l~~~~~-~~tviiitH~~~~~~~aD~i~vl- 229 (632)
+...+||+|.++++ +|++||+...+.+.+.|+++.+ |.|+|+|||+++.+..||+|++|
T Consensus 460 r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~~~~~aD~ii~lg 539 (916)
T 3pih_A 460 RSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEVIRNADHIIDIG 539 (916)
T ss_dssp SBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHHHHHTCSEEEEEE
T ss_pred CCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEc
Confidence 45778999998777 3899999999999999999864 78999999999999889999999
Q ss_pred -----eCCeEEEecChhHHhcCC
Q 047286 230 -----SKGKIVEKGTHDELIEDP 247 (632)
Q Consensus 230 -----~~G~i~~~g~~~el~~~~ 247 (632)
++|+++++|+++++...+
T Consensus 540 pgag~~~G~iv~~G~~~e~~~~~ 562 (916)
T 3pih_A 540 PGGGTNGGRVVFQGTVDELLKNP 562 (916)
T ss_dssp SSSGGGCSEEEEEECHHHHHHSC
T ss_pred CCcccCCCEEEEeechhhhhcCc
Confidence 899999999999987653
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.8e-24 Score=212.16 Aligned_cols=130 Identities=28% Similarity=0.315 Sum_probs=107.3
Q ss_pred cEEEeeEEEEEecCCCChHHHHHhhhcCCChhh--------------------hcH--------------HHH---HHHH
Q 047286 501 DIVFEHTVALVGENGNGKSTVISLAERFHNPEQ--------------------VIY--------------SWI---IIKC 543 (632)
Q Consensus 501 ~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~--------------------~~~--------------~~~---~~~~ 543 (632)
+|+-++++||+||||||||||+++|.|+++|++ ... ... ..++
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l 106 (237)
T 2cbz_A 27 SIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACAL 106 (237)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSSCCCCSEEHHHHHHTTSCCCTTHHHHHHHHTTC
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCCCcCCCcCHHHHhhCccccCHHHHHHHHHHHhh
Confidence 344456999999999999999999999988743 000 000 1123
Q ss_pred HHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh--------------------------------------hccc
Q 047286 544 TNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY--------------------------------------CGCG 585 (632)
Q Consensus 544 ~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~--------------------------------------~~ia 585 (632)
.+++..+|.|++|.+++.+.+||||||||++||||++. +++|
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivt 186 (237)
T 2cbz_A 107 LPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVT 186 (237)
T ss_dssp HHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEEC
T ss_pred HHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEe
Confidence 35677789999999999999999999999999999443 5679
Q ss_pred cchhhhhcCCEEEEEeCCeEeeecChHHHhccCCchhHHHHHhhhc
Q 047286 586 SPPYHYKNADITSVVKNGVIAEKGRHDALMKITDGTYASLTALHMS 631 (632)
Q Consensus 586 hrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~~~~~~ 631 (632)
|+++.+..||+|++|++|+|++.|+++++++. ++.|+++++.|.+
T Consensus 187 H~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~~~~~~ 231 (237)
T 2cbz_A 187 HSMSYLPQVDVIIVMSGGKISEMGSYQELLAR-DGAFAEFLRTYAS 231 (237)
T ss_dssp SCSTTGGGSSEEEEEETTEEEEEECHHHHHHH-TSHHHHHHHHTCC
T ss_pred cChHHHHhCCEEEEEeCCEEEEeCCHHHHhhc-cHHHHHHHHHHHh
Confidence 99999889999999999999999999999987 8999999988764
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.2e-24 Score=217.45 Aligned_cols=160 Identities=18% Similarity=0.287 Sum_probs=125.6
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC-----------------CcHHhhcceEEEcccCcc-cccccccccc
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY-----------------APEAEQEKIGLVSKEPIF-LFCDFNEGQY 147 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~-----------------~~~~~r~~i~~v~Q~~~~-~~~~~~~~~~ 147 (632)
+||+|++||+++|+||||||||||+++|+|+... .+...+++++|++|++.+ +...++..+|
T Consensus 40 isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~en 119 (279)
T 2ihy_A 40 ISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDV 119 (279)
T ss_dssp EEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHH
T ss_pred eeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHH
Confidence 9999999999999999999999999999865321 122356789999999864 3332233336
Q ss_pred cccCCC-------CCC---HHHHHHHHHHccchh----hHhhCCcccccccc-----------------cCCCCHHHHHH
Q 047286 148 IPYGKQ-------NAS---DEHIRPAVQLANAEK----SIDKLPLGLDTVVA-----------------TNAVDAQSERI 196 (632)
Q Consensus 148 i~~~~~-------~~~---~~~~~~~~~~~~l~~----~i~~l~~g~~~~v~-----------------ts~LD~~~~~~ 196 (632)
+.++.. ... .+++.++++.+++.+ .+.+||+|++++++ |++||+.+++.
T Consensus 120 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~ 199 (279)
T 2ihy_A 120 VISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARES 199 (279)
T ss_dssp HHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHH
T ss_pred HHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHH
Confidence 665421 112 245677888887654 46789999998883 99999999999
Q ss_pred HHHHHHHHhC-CceE--EEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhc
Q 047286 197 VQAAMVKLVT-NQTV--VIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIE 245 (632)
Q Consensus 197 i~~~l~~~~~-~~tv--iiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~ 245 (632)
+++.|+++.+ ++|+ |++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 200 l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 252 (279)
T 2ihy_A 200 LLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILT 252 (279)
T ss_dssp HHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHHHHCS
T ss_pred HHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999998854 7899 99999999875 599999999999999999998853
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.9e-24 Score=216.20 Aligned_cols=124 Identities=35% Similarity=0.436 Sum_probs=105.1
Q ss_pred eeEEEEEecCCCChHHHHHhhhcCCChhh---------h---cHH----------------------------------H
Q 047286 505 EHTVALVGENGNGKSTVISLAERFHNPEQ---------V---IYS----------------------------------W 538 (632)
Q Consensus 505 ~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~---~~~----------------------------------~ 538 (632)
++++||+||||||||||+++|.|+++|++ + ... .
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~ 124 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTME 124 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHHHHHTTCSSCCCHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCccccccHHHHHhhhcccCChHH
Confidence 45899999999999999999999998742 0 000 0
Q ss_pred ------HHHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh-------------------------------
Q 047286 539 ------IIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY------------------------------- 581 (632)
Q Consensus 539 ------~~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~------------------------------- 581 (632)
....+.+++..+|+|+++.+++.+.+||||||||++||||++.
T Consensus 125 ~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~ 204 (271)
T 2ixe_A 125 EITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPE 204 (271)
T ss_dssp HHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHh
Confidence 0113457788899999999999999999999999999999654
Q ss_pred ------hccccchhhhhcCCEEEEEeCCeEeeecChHHHhccCCchhHHHHHhh
Q 047286 582 ------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKITDGTYASLTALH 629 (632)
Q Consensus 582 ------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~~~~ 629 (632)
+++||+++.+..||+|++|++|+|++.|+++++++. .+.|+++++.+
T Consensus 205 ~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~~ 257 (271)
T 2ixe_A 205 WASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMER-GGCYRSMVEAL 257 (271)
T ss_dssp TTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHH-TSHHHHHHHC-
T ss_pred hcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-cHHHHHHHHHh
Confidence 678999999988999999999999999999999987 89999998765
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=99.90 E-value=4.6e-24 Score=209.82 Aligned_cols=153 Identities=19% Similarity=0.201 Sum_probs=119.7
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC---------------cH---Hhh-cceEEEcccCccccccccccc
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA---------------PE---AEQ-EKIGLVSKEPIFLFCDFNEGQ 146 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~---------------~~---~~r-~~i~~v~Q~~~~~~~~~~~~~ 146 (632)
+||++++||+++|+||||||||||+++|.|+..+. +. ..+ +.++|++|++.++. ..+..+
T Consensus 23 vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~-~~tv~e 101 (224)
T 2pcj_A 23 ISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIP-ELTALE 101 (224)
T ss_dssp EEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCT-TSCHHH
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCC-CCCHHH
Confidence 99999999999999999999999999998653211 11 123 67999999987654 333333
Q ss_pred ccccCCC--CC----CHHHHHHHHHHccchh----hHhhCCcccccccc-----------------cCCCCHHHHHHHHH
Q 047286 147 YIPYGKQ--NA----SDEHIRPAVQLANAEK----SIDKLPLGLDTVVA-----------------TNAVDAQSERIVQA 199 (632)
Q Consensus 147 ~i~~~~~--~~----~~~~~~~~~~~~~l~~----~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~ 199 (632)
|+.++.. .. ..+++.++++.+++.+ .+.+||+|++++++ |++||+.+++.+.+
T Consensus 102 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~ 181 (224)
T 2pcj_A 102 NVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMD 181 (224)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHH
T ss_pred HHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 5654311 11 1345677888887653 46789999998883 99999999999999
Q ss_pred HHHHHh-CCceEEEEecCchHHhhcCeEEEEeCCeEEEecC
Q 047286 200 AMVKLV-TNQTVVIVANCLITIRNADCIIMVSKGKIVEKGT 239 (632)
Q Consensus 200 ~l~~~~-~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~ 239 (632)
.|+++. +++|+|++||+++.+..||++++|++|+++++|+
T Consensus 182 ~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 182 IFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp HHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred HHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEee
Confidence 999985 4789999999998886799999999999999885
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-23 Score=214.24 Aligned_cols=154 Identities=21% Similarity=0.338 Sum_probs=121.1
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHH----hhcceEEEcccCcccccccccccccccCCCCCCHHHHH
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEA----EQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIR 161 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~----~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 161 (632)
+||+|++|++++|+||||||||||+++|.|+ +.|.. +..+++|++|++.+|..++.+ |+. +.. ....++.
T Consensus 57 isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl--~~p~~G~I~~~g~i~~v~Q~~~l~~~tv~e--nl~-~~~-~~~~~~~ 130 (290)
T 2bbs_A 57 INFKIERGQLLAVAGSTGAGKTSLLMMIMGE--LEPSEGKIKHSGRISFCSQNSWIMPGTIKE--NII-GVS-YDEYRYR 130 (290)
T ss_dssp EEEEECTTCEEEEEESTTSSHHHHHHHHTTS--SCEEEEEEECCSCEEEECSSCCCCSSBHHH--HHH-TTC-CCHHHHH
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhcC--CCCCCcEEEECCEEEEEeCCCccCcccHHH--Hhh-Ccc-cchHHHH
Confidence 9999999999999999999999999999855 33332 234699999999887766665 665 422 2334445
Q ss_pred HHHHHccchhhH---------------hhCCccccccc-----------------ccCCCCHHHHHHHHHHH-HHHhCCc
Q 047286 162 PAVQLANAEKSI---------------DKLPLGLDTVV-----------------ATNAVDAQSERIVQAAM-VKLVTNQ 208 (632)
Q Consensus 162 ~~~~~~~l~~~i---------------~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l-~~~~~~~ 208 (632)
++++.+++.+.+ .+||+|+++++ +|++||+.+++.+++.+ +++.+++
T Consensus 131 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~ 210 (290)
T 2bbs_A 131 SVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANK 210 (290)
T ss_dssp HHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTS
T ss_pred HHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCC
Confidence 555656655443 46777777766 39999999999999864 4555688
Q ss_pred eEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHhc
Q 047286 209 TVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIE 245 (632)
Q Consensus 209 tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~ 245 (632)
|+|++||+++.+..||++++|++|++++.|+++++..
T Consensus 211 tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 211 TRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQN 247 (290)
T ss_dssp EEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHH
T ss_pred EEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhh
Confidence 9999999999888899999999999999999999864
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.9e-23 Score=206.05 Aligned_cols=125 Identities=22% Similarity=0.279 Sum_probs=102.7
Q ss_pred cEEEeeEEEEEecCCCChHHHHHhhhcCCChhh----------------------------h----cHHH-----HHHHH
Q 047286 501 DIVFEHTVALVGENGNGKSTVISLAERFHNPEQ----------------------------V----IYSW-----IIIKC 543 (632)
Q Consensus 501 ~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~----------------------------~----~~~~-----~~~~~ 543 (632)
+|+-++++||+||||||||||+++|.|+++|++ + .... ...++
T Consensus 30 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l 109 (229)
T 2pze_A 30 KIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQL 109 (229)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCCCSBCHHHHHHTTSCCCHHHHHHHHHHTTC
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCcccCCCHHHHhhccCCcChHHHHHHHHHhCc
Confidence 455556999999999999999999999998743 0 0000 01145
Q ss_pred HHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh------------------------------------hccccc
Q 047286 544 TNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY------------------------------------CGCGSP 587 (632)
Q Consensus 544 ~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~------------------------------------~~iahr 587 (632)
.+++..+|.++++.+++++.+||||||||++||||+.. +++||+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~ 189 (229)
T 2pze_A 110 EEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSK 189 (229)
T ss_dssp HHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCC
T ss_pred HHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCC
Confidence 57888899999999999999999999999999999554 678999
Q ss_pred hhhhhcCCEEEEEeCCeEeeecChHHHhccCCchhHHHH
Q 047286 588 PYHYKNADITSVVKNGVIAEKGRHDALMKITDGTYASLT 626 (632)
Q Consensus 588 l~~~~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~ 626 (632)
++.++.||+|++|++|+|++.|+++++++. ++.|.+++
T Consensus 190 ~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~ 227 (229)
T 2pze_A 190 MEHLKKADKILILHEGSSYFYGTFSELQNL-QPDFSSKL 227 (229)
T ss_dssp HHHHHHCSEEEEEETTEEEEEECHHHHHTC---CHHHHH
T ss_pred hHHHHhCCEEEEEECCEEEEECCHHHHHhc-ChHHHHHh
Confidence 998888999999999999999999999986 67787765
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-23 Score=221.33 Aligned_cols=120 Identities=22% Similarity=0.238 Sum_probs=100.2
Q ss_pred eeEEEEEecCCCChHHHHHhhhcCCChhh-----------hcH-------------------------------------
Q 047286 505 EHTVALVGENGNGKSTVISLAERFHNPEQ-----------VIY------------------------------------- 536 (632)
Q Consensus 505 ~~~vaIVG~SGsGKSTL~~ll~r~y~~~~-----------~~~------------------------------------- 536 (632)
+++++|+||||||||||+++|.|+++++. ...
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaGl~~~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~~tv~enl~~~~~~~~~~v~ 126 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIW 126 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTCSEEEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCSEEHHHHHCTTCCSCHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHhCCCCCCeEEEECCEECCcCChHHHhCCEEEEcCCcccCccCHHHHhhhccccCHHHHH
Confidence 45899999999999999999999975210 000
Q ss_pred -HHHHHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh----------------------------------
Q 047286 537 -SWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY---------------------------------- 581 (632)
Q Consensus 537 -~~~~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~---------------------------------- 581 (632)
.....++.+++...|.+|+|.++++|.+||||||||+|||||+..
T Consensus 127 ~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~t 206 (390)
T 3gd7_A 127 KVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCT 206 (390)
T ss_dssp HHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSC
T ss_pred HHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCE
Confidence 011225567899999999999999999999999999999999655
Q ss_pred -hccccchhhhhcCCEEEEEeCCeEeeecChHHHhccCCchhHH
Q 047286 582 -CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKITDGTYAS 624 (632)
Q Consensus 582 -~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~ 624 (632)
+++||+++.+..||+|+||++|+|++.|+++|+++++...|..
T Consensus 207 vi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~p~~~~va 250 (390)
T 3gd7_A 207 VILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVA 250 (390)
T ss_dssp EEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHCCSBHHHH
T ss_pred EEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCchHHH
Confidence 7889999999999999999999999999999999875555543
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.9e-23 Score=209.77 Aligned_cols=153 Identities=14% Similarity=0.183 Sum_probs=125.0
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHH------------hhcceE-EEcccCcccccccccccccccCC
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEA------------EQEKIG-LVSKEPIFLFCDFNEGQYIPYGK 152 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~------------~r~~i~-~v~Q~~~~~~~~~~~~~~i~~~~ 152 (632)
+||+++ |++++|+||||||||||+++|+|+. ..... .+++++ |++|++.+ ..++.+ |+.++.
T Consensus 24 vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l-~~tv~e--nl~~~~ 98 (263)
T 2pjz_A 24 INLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEI-GVTVND--IVYLYE 98 (263)
T ss_dssp EEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEECCGGGSCT-TSBHHH--HHHHHH
T ss_pred eeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEEeCCCCcc-CCcHHH--HHHHhh
Confidence 899999 9999999999999999999999764 32111 145799 99999976 555555 565432
Q ss_pred C--CCCHHHHHHHHHHccch-h----hHhhCCcccccccc-----------------cCCCCHHHHHHHHHHHHHHhCCc
Q 047286 153 Q--NASDEHIRPAVQLANAE-K----SIDKLPLGLDTVVA-----------------TNAVDAQSERIVQAAMVKLVTNQ 208 (632)
Q Consensus 153 ~--~~~~~~~~~~~~~~~l~-~----~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~~l~~~~~~~ 208 (632)
. ....+++.++++..++. + ...+||+|++++++ |++||+.+++.+.+.|+++.+
T Consensus 99 ~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~-- 176 (263)
T 2pjz_A 99 ELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK-- 176 (263)
T ss_dssp HHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--
T ss_pred hhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC--
Confidence 1 34567788889888876 4 35689999998883 999999999999999998855
Q ss_pred eEEEEecCchHHh-hcC-eEEEEeCCeEEEecChhHHhc
Q 047286 209 TVVIVANCLITIR-NAD-CIIMVSKGKIVEKGTHDELIE 245 (632)
Q Consensus 209 tviiitH~~~~~~-~aD-~i~vl~~G~i~~~g~~~el~~ 245 (632)
|+|++||+++.+. .|| ++++|++|++++.|+++++.+
T Consensus 177 tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~ 215 (263)
T 2pjz_A 177 EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLE 215 (263)
T ss_dssp EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHT
T ss_pred cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHh
Confidence 9999999998875 599 999999999999999999864
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.1e-23 Score=208.64 Aligned_cols=156 Identities=16% Similarity=0.259 Sum_probs=115.1
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCc-----------------HH-hhcceEEEcccCcccccccccccc
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAP-----------------EA-EQEKIGLVSKEPIFLFCDFNEGQY 147 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~-----------------~~-~r~~i~~v~Q~~~~~~~~~~~~~~ 147 (632)
+||+|++||+++|+||||||||||+++|.|+..+.| .. .+..++|++|++.+|.. ++..+|
T Consensus 22 vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~-~tv~e~ 100 (250)
T 2d2e_A 22 VNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPG-VTIANF 100 (250)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCS-CBHHHH
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccC-CCHHHH
Confidence 999999999999999999999999999997511111 11 13458999999976543 232235
Q ss_pred cccCC-----CCCC----HHHHHHHHHHccc-hh----hHhh-CCcccccccc-----------------cCCCCHHHHH
Q 047286 148 IPYGK-----QNAS----DEHIRPAVQLANA-EK----SIDK-LPLGLDTVVA-----------------TNAVDAQSER 195 (632)
Q Consensus 148 i~~~~-----~~~~----~~~~~~~~~~~~l-~~----~i~~-l~~g~~~~v~-----------------ts~LD~~~~~ 195 (632)
+.++. .... .+++.++++..++ .+ .+.+ ||+|++++++ |++||+.+++
T Consensus 101 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~ 180 (250)
T 2d2e_A 101 LRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALK 180 (250)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHH
T ss_pred HHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHH
Confidence 54321 0011 2456777887777 33 3455 9999998883 9999999999
Q ss_pred HHHHHHHHHh-CCceEEEEecCchHHhh--cCeEEEEeCCeEEEecChhH
Q 047286 196 IVQAAMVKLV-TNQTVVIVANCLITIRN--ADCIIMVSKGKIVEKGTHDE 242 (632)
Q Consensus 196 ~i~~~l~~~~-~~~tviiitH~~~~~~~--aD~i~vl~~G~i~~~g~~~e 242 (632)
.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++.
T Consensus 181 ~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 181 VVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPEL 230 (250)
T ss_dssp HHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHHH
T ss_pred HHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHHH
Confidence 9999999985 47899999999998875 59999999999999999873
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=99.87 E-value=8.3e-23 Score=206.10 Aligned_cols=158 Identities=18% Similarity=0.286 Sum_probs=120.0
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCc-----------------HHh-hcceEEEcccCcccccccccccc
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAP-----------------EAE-QEKIGLVSKEPIFLFCDFNEGQY 147 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~-----------------~~~-r~~i~~v~Q~~~~~~~~~~~~~~ 147 (632)
+||+|++||+++|+||||||||||+|+|.|+..+.| ... +..++|++|++.++.. ++..+|
T Consensus 39 vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~-~tv~e~ 117 (267)
T 2zu0_C 39 LSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPG-VSNQFF 117 (267)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTT-CBHHHH
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCcccccc-ccHHHH
Confidence 999999999999999999999999999997621111 111 3459999999876543 222223
Q ss_pred ccc---------CCCCCC----HHHHHHHHHHccch-h----hHh-hCCcccccccc-----------------cCCCCH
Q 047286 148 IPY---------GKQNAS----DEHIRPAVQLANAE-K----SID-KLPLGLDTVVA-----------------TNAVDA 191 (632)
Q Consensus 148 i~~---------~~~~~~----~~~~~~~~~~~~l~-~----~i~-~l~~g~~~~v~-----------------ts~LD~ 191 (632)
+.+ +..... .+++.++++..++. + .+. +||+|++++++ |++||+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~ 197 (267)
T 2zu0_C 118 LQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDI 197 (267)
T ss_dssp HHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCH
T ss_pred HHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Confidence 322 111112 24567788888774 2 233 49999998883 999999
Q ss_pred HHHHHHHHHHHHHh-CCceEEEEecCchHHhh--cCeEEEEeCCeEEEecChhHHh
Q 047286 192 QSERIVQAAMVKLV-TNQTVVIVANCLITIRN--ADCIIMVSKGKIVEKGTHDELI 244 (632)
Q Consensus 192 ~~~~~i~~~l~~~~-~~~tviiitH~~~~~~~--aD~i~vl~~G~i~~~g~~~el~ 244 (632)
.+++.+++.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 198 ~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 253 (267)
T 2zu0_C 198 DALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVK 253 (267)
T ss_dssp HHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECTTHHH
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCHHHHh
Confidence 99999999999885 47899999999998864 8999999999999999988764
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=6.1e-22 Score=201.54 Aligned_cols=121 Identities=22% Similarity=0.295 Sum_probs=95.6
Q ss_pred eeEEEEEecCCCChHHHHHhhhcCCChhh--------------------------h-----cHHH-----HHHHHHHHHh
Q 047286 505 EHTVALVGENGNGKSTVISLAERFHNPEQ--------------------------V-----IYSW-----IIIKCTNFIA 548 (632)
Q Consensus 505 ~~~vaIVG~SGsGKSTL~~ll~r~y~~~~--------------------------~-----~~~~-----~~~~~~~~i~ 548 (632)
++++||+||||||||||+++|.|+++|++ + .... ...++.+++.
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~l~~~l~ 143 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPGTIKENIIGVSYDEYRYRSVIKACQLEEDIS 143 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSSCCCCSSBHHHHHHTTCCCHHHHHHHHHHTTCHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCCCccCcccHHHHhhCcccchHHHHHHHHHhChHHHHH
Confidence 45899999999999999999999998743 0 0000 0113456788
Q ss_pred cCCCccCcccccCCCCCChHHHHHHHHHHHHhh------------------------------------hccccchhhhh
Q 047286 549 SLPQGSDLNVGERGLQLSGGLKQRIARTRARNY------------------------------------CGCGSPPYHYK 592 (632)
Q Consensus 549 ~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~------------------------------------~~iahrl~~~~ 592 (632)
.+|.++++.+++.+.+||||||||++||||+.. +++||.+..++
T Consensus 144 ~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~ 223 (290)
T 2bbs_A 144 KFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK 223 (290)
T ss_dssp TSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH
T ss_pred hccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHH
Confidence 899999999999999999999999999999544 67899999988
Q ss_pred cCCEEEEEeCCeEeeecChHHHhccCCchhHHHH
Q 047286 593 NADITSVVKNGVIAEKGRHDALMKITDGTYASLT 626 (632)
Q Consensus 593 ~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~ 626 (632)
.||+|++|++|++++.|+++++++. ...|.+.+
T Consensus 224 ~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~ 256 (290)
T 2bbs_A 224 KADKILILHEGSSYFYGTFSELQNL-RPDFSSKL 256 (290)
T ss_dssp HSSEEEEEETTEEEEEECHHHHHHH-CHHHHHHH
T ss_pred cCCEEEEEECCeEEEeCCHHHHhhh-cHHHHHHH
Confidence 8999999999999999999999874 55565543
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=5.9e-24 Score=216.76 Aligned_cols=180 Identities=12% Similarity=0.082 Sum_probs=123.4
Q ss_pred CCcCHHHHHHHHHH-HHHHHHHHHHhHHhHHHHHHHHHHHHHHHHccCCCCCCCCCCC------CCCCc-----------
Q 047286 436 GDATFGEVFKFLSE-FGCFWCLESTAVAPNADKAKGSAASIFEILESKPKIDWSSKDG------MTPST----------- 497 (632)
Q Consensus 436 g~~s~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~------~~~~~----------- 497 (632)
+..+.+...+|+.. ....++..+......++++..+.+|+.++++.+++...+.... .....
T Consensus 38 ~~~~~~n~~afl~~~~q~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~vL~ 117 (305)
T 2v9p_A 38 AAGSDSNARAFLATNSQAKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGEGSWKSILTFFNYQNIELITFINALK 117 (305)
T ss_dssp TTTTCHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCSSCCTHHHHHHHHHTTCCHHHHHHHHH
T ss_pred hcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCcccccCCeEEEEEEEEEcChhhhc
Confidence 33445666666622 1123466677777888899999999999987654321110000 00000
Q ss_pred -ccccEEEeeEEEEEecCCCChHHHHHhhhcCCC-------hhh--hcHHHHH-----------HHHHHHHhc-CCCccC
Q 047286 498 -VRGDIVFEHTVALVGENGNGKSTVISLAERFHN-------PEQ--VIYSWII-----------IKCTNFIAS-LPQGSD 555 (632)
Q Consensus 498 -~~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~-------~~~--~~~~~~~-----------~~~~~~i~~-lp~g~d 555 (632)
+.-+|+-++++|||||||||||||+++|.|+|. ++. ++..... ..+++++.. ||+|+|
T Consensus 118 ~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I~~~v~q~~~lf~~ti~~~ni~~~~~~~~~~~~~i~~~L~~gld 197 (305)
T 2v9p_A 118 LWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSVLSFANHKSHFWLASLADTRAALVDDATHACWRYFDTYLRNALD 197 (305)
T ss_dssp HHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHHTCEEECGGGTTSGGGGGGGTTCSCEEEEEECHHHHHHHHHTTTGGGG
T ss_pred cceEEecCCCEEEEECCCCCcHHHHHHHHhhhcCceEEEEecCccccccccHHHHhhccCccccHHHHHHHHHHhHccCC
Confidence 011233345899999999999999999999861 110 1111111 146789998 999998
Q ss_pred cccccCCCCCChHHHHHHHHHHHHhh------------------hccccchhhhhcCCEEEEEeCCeEeeecChHHHhcc
Q 047286 556 LNVGERGLQLSGGLKQRIARTRARNY------------------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKI 617 (632)
Q Consensus 556 t~vge~G~~LSgGQrQRiaiARA~~~------------------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~ 617 (632)
|.+|||||||| |||+++ ..++||+++++.||+| ||++|+|++.|+|++|
T Consensus 198 ------g~~LSgGqkQR---ARAll~~p~iLlTs~LD~~~~~~i~~ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el--- 264 (305)
T 2v9p_A 198 ------GYPVSIDRKHK---AAVQIKAPPLLVTSNIDVQAEDRYLYLHSRVQTFRFEQPC-TDESGEQPFNITDADW--- 264 (305)
T ss_dssp ------TCCEECCCSSC---CCCEECCCCEEEEESSCSTTCGGGGGGTTTEEEEECCCCC-CCC---CCCCCCHHHH---
T ss_pred ------ccCcCHHHHHH---HHHHhCCCCEEEECCCCHHHHHHHHHHhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH---
Confidence 78999999999 999665 3459999999999999 9999999999999999
Q ss_pred CCchhHHHHHhh
Q 047286 618 TDGTYASLTALH 629 (632)
Q Consensus 618 ~~g~y~~l~~~~ 629 (632)
++.|++++..+
T Consensus 265 -~~~y~~l~~~~ 275 (305)
T 2v9p_A 265 -KSFFVRLWGRL 275 (305)
T ss_dssp -HHHHHHSTTTT
T ss_pred -HHHHHHHHHHc
Confidence 47899998765
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=99.84 E-value=4.2e-21 Score=199.72 Aligned_cols=117 Identities=24% Similarity=0.288 Sum_probs=88.1
Q ss_pred eEEEEEecCCCChHHHHHhhhcCCChhh------------hcHHHH-------------------------H--------
Q 047286 506 HTVALVGENGNGKSTVISLAERFHNPEQ------------VIYSWI-------------------------I-------- 540 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r~y~~~~------------~~~~~~-------------------------~-------- 540 (632)
+++||+||||||||||+++|.|++.|++ ...... +
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~ 134 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN 134 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSC
T ss_pred CEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcC
Confidence 4899999999999999999999998853 000000 0
Q ss_pred -------HHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh--------------------------------
Q 047286 541 -------IKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY-------------------------------- 581 (632)
Q Consensus 541 -------~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~-------------------------------- 581 (632)
..+.+.+..+ |++........+||||||||++||||+..
T Consensus 135 ~~~~~~~~~v~~lL~~v--gL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~ 212 (366)
T 3tui_C 135 TPKDEVKRRVTELLSLV--GLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRR 212 (366)
T ss_dssp CCHHHHHHHHHHHHHHH--TCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHc--CCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHh
Confidence 0112222222 44444556678999999999999999544
Q ss_pred -----hccccchhhhh-cCCEEEEEeCCeEeeecChHHHhccCCchhHH
Q 047286 582 -----CGCGSPPYHYK-NADITSVVKNGVIAEKGRHDALMKITDGTYAS 624 (632)
Q Consensus 582 -----~~iahrl~~~~-~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~ 624 (632)
+++||.++.++ .||+|+||++|+|++.|++++++..+...|.+
T Consensus 213 ~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~~~p~~~~~~ 261 (366)
T 3tui_C 213 LGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQ 261 (366)
T ss_dssp SCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHHSSCCSHHHH
T ss_pred CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCcHHHH
Confidence 78899999986 59999999999999999999999875555543
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-21 Score=190.73 Aligned_cols=146 Identities=18% Similarity=0.243 Sum_probs=112.2
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCc----------HHhhcceEEEcccCccccc-ccccccccccCC--
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAP----------EAEQEKIGLVSKEPIFLFC-DFNEGQYIPYGK-- 152 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~----------~~~r~~i~~v~Q~~~~~~~-~~~~~~~i~~~~-- 152 (632)
+||++++||+++|+||||||||||+++|+|+..... ...++.++|++|++.+|.. ++.+ |+.++.
T Consensus 28 vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e--nl~~~~~~ 105 (214)
T 1sgw_A 28 ITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVED--YLKAVASL 105 (214)
T ss_dssp EEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHH--HHHHHHHH
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHH--HHHHHHHh
Confidence 899999999999999999999999999986532210 0246789999999976543 4444 554431
Q ss_pred -C-CCCHHHHHHHHHHccch---hhHhhCCcccccccc-----------------cCCCCHHHHHHHHHHHHHHh-CCce
Q 047286 153 -Q-NASDEHIRPAVQLANAE---KSIDKLPLGLDTVVA-----------------TNAVDAQSERIVQAAMVKLV-TNQT 209 (632)
Q Consensus 153 -~-~~~~~~~~~~~~~~~l~---~~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~~l~~~~-~~~t 209 (632)
. ....+++.++++.+++. +.+.+||+|++++++ |++||+.+++.+.+.|+++. +++|
T Consensus 106 ~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~t 185 (214)
T 1sgw_A 106 YGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGI 185 (214)
T ss_dssp TTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSE
T ss_pred cCCchHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCE
Confidence 1 22366788889988874 456689999998883 99999999999999999885 4789
Q ss_pred EEEEecCchHHhh-cCeEEEEeCCeE
Q 047286 210 VVIVANCLITIRN-ADCIIMVSKGKI 234 (632)
Q Consensus 210 viiitH~~~~~~~-aD~i~vl~~G~i 234 (632)
+|++||+++.+.. ||+++ +..|+|
T Consensus 186 iiivtHd~~~~~~~~d~v~-~~~~~~ 210 (214)
T 1sgw_A 186 VIISSREELSYCDVNENLH-KYSTKI 210 (214)
T ss_dssp EEEEESSCCTTSSEEEEGG-GGBC--
T ss_pred EEEEeCCHHHHHHhCCEEE-EeCCcc
Confidence 9999999998876 77775 455665
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-20 Score=197.59 Aligned_cols=119 Identities=20% Similarity=0.225 Sum_probs=89.8
Q ss_pred EeeEEEEEecCCCChHHHHHhhhcCCChhh--------------------------------------hcHHHH------
Q 047286 504 FEHTVALVGENGNGKSTVISLAERFHNPEQ--------------------------------------VIYSWI------ 539 (632)
Q Consensus 504 f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~--------------------------------------~~~~~~------ 539 (632)
-++++||+||||||||||+++|.|+++|++ +.....
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~ 107 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKK 107 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCH
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHcCCCH
Confidence 345899999999999999999999998743 000000
Q ss_pred ---HHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh-----------------------------------
Q 047286 540 ---IIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY----------------------------------- 581 (632)
Q Consensus 540 ---~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~----------------------------------- 581 (632)
...+.+.+..+ |++........+||||||||+|||||+..
T Consensus 108 ~~~~~~v~~~l~~~--~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~ 185 (381)
T 3rlf_A 108 EVINQRVNQVAEVL--QLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGR 185 (381)
T ss_dssp HHHHHHHHHHHHHT--TCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHc--CCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCC
Confidence 11223334333 45445556677899999999999999654
Q ss_pred --hccccchhhh-hcCCEEEEEeCCeEeeecChHHHhccCCchhHH
Q 047286 582 --CGCGSPPYHY-KNADITSVVKNGVIAEKGRHDALMKITDGTYAS 624 (632)
Q Consensus 582 --~~iahrl~~~-~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~ 624 (632)
+++||.+..+ +.||+|+||++|+|++.|+++|+++++...|..
T Consensus 186 tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p~~~~v~ 231 (381)
T 3rlf_A 186 TMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVA 231 (381)
T ss_dssp EEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSBHHHH
T ss_pred EEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCccHHHH
Confidence 7889999876 469999999999999999999999875555543
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-20 Score=195.49 Aligned_cols=120 Identities=22% Similarity=0.223 Sum_probs=88.6
Q ss_pred EEeeEEEEEecCCCChHHHHHhhhcCCChhh---------h---------------------------cHHHH-------
Q 047286 503 VFEHTVALVGENGNGKSTVISLAERFHNPEQ---------V---------------------------IYSWI------- 539 (632)
Q Consensus 503 ~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~---------------------------~~~~~------- 539 (632)
+-+++++|+||||||||||+++|.|+++|++ + ....-
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~ 107 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGN 107 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTT
T ss_pred cCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHH
Confidence 3345899999999999999999999988743 0 00000
Q ss_pred --------HHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh------------------------------
Q 047286 540 --------IIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY------------------------------ 581 (632)
Q Consensus 540 --------~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~------------------------------ 581 (632)
...+.+.+..+ |++........+||||||||+|||||+..
T Consensus 108 ~~~~~~~~~~~v~~~l~~~--gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~ 185 (359)
T 3fvq_A 108 GKGRTAQERQRIEAMLELT--GISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAAL 185 (359)
T ss_dssp SSCCSHHHHHHHHHHHHHH--TCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHHHc--CCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 01122222222 44444555667899999999999999554
Q ss_pred -------hccccchhhhh-cCCEEEEEeCCeEeeecChHHHhccCCchhHH
Q 047286 582 -------CGCGSPPYHYK-NADITSVVKNGVIAEKGRHDALMKITDGTYAS 624 (632)
Q Consensus 582 -------~~iahrl~~~~-~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~ 624 (632)
+++||.+..+. .||+|+||++|+|++.|+++|++.++...|..
T Consensus 186 ~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~p~~~~~a 236 (359)
T 3fvq_A 186 RANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQPADLDAA 236 (359)
T ss_dssp HHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSCHHHH
T ss_pred HhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhCcccHHHH
Confidence 78899998774 69999999999999999999999875555443
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.8e-20 Score=189.17 Aligned_cols=115 Identities=20% Similarity=0.174 Sum_probs=85.9
Q ss_pred cEEEeeEEEEEecCCCChHHHHHhhhcCCChhh---------h--cHH---HH-----------------------H---
Q 047286 501 DIVFEHTVALVGENGNGKSTVISLAERFHNPEQ---------V--IYS---WI-----------------------I--- 540 (632)
Q Consensus 501 ~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~--~~~---~~-----------------------~--- 540 (632)
+|.-++++||+||||||||||+++|.|+++|++ + ... .. +
T Consensus 30 ~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~ 109 (275)
T 3gfo_A 30 NIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFG 109 (275)
T ss_dssp EEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHH
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHH
Confidence 344456999999999999999999999998743 1 000 00 0
Q ss_pred ------------HHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh---------------------------
Q 047286 541 ------------IKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY--------------------------- 581 (632)
Q Consensus 541 ------------~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~--------------------------- 581 (632)
..+.+.+..+ |++........+||||||||++||||+..
T Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~--~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~ 187 (275)
T 3gfo_A 110 AVNMKLPEDEIRKRVDNALKRT--GIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLV 187 (275)
T ss_dssp HHTSCCCHHHHHHHHHHHHHHT--TCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHc--CCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHH
Confidence 0111222222 34444455667899999999999999544
Q ss_pred ----------hccccchhhhh-cCCEEEEEeCCeEeeecChHHHhcc
Q 047286 582 ----------CGCGSPPYHYK-NADITSVVKNGVIAEKGRHDALMKI 617 (632)
Q Consensus 582 ----------~~iahrl~~~~-~aD~I~vl~~G~ive~G~h~eL~~~ 617 (632)
+++||++..+. .||+|++|++|+|++.|++++++..
T Consensus 188 ~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 234 (275)
T 3gfo_A 188 EMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234 (275)
T ss_dssp HHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTHH
T ss_pred HHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 68899999986 5999999999999999999999875
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.81 E-value=9.2e-20 Score=208.66 Aligned_cols=76 Identities=21% Similarity=0.323 Sum_probs=67.3
Q ss_pred hhHhhCCccccccc-------------------ccCCCCHHHHHHHHHHHHHHh-CCceEEEEecCchHHhhcCeEEEE-
Q 047286 171 KSIDKLPLGLDTVV-------------------ATNAVDAQSERIVQAAMVKLV-TNQTVVIVANCLITIRNADCIIMV- 229 (632)
Q Consensus 171 ~~i~~l~~g~~~~v-------------------~ts~LD~~~~~~i~~~l~~~~-~~~tviiitH~~~~~~~aD~i~vl- 229 (632)
....+||+|..++| +|++||+...+.+.+.|++++ .|.|||+|+|+++.+..||+|++|
T Consensus 500 R~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~Lg 579 (972)
T 2r6f_A 500 RSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAADYLIDIG 579 (972)
T ss_dssp SBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHHSCSEEEEEC
T ss_pred CccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEeC
Confidence 44678899988777 389999999999999999986 478999999999999889999999
Q ss_pred -----eCCeEEEecChhHHhcC
Q 047286 230 -----SKGKIVEKGTHDELIED 246 (632)
Q Consensus 230 -----~~G~i~~~g~~~el~~~ 246 (632)
++|+++++|+++++...
T Consensus 580 pgaG~~gG~iv~~G~~~e~~~~ 601 (972)
T 2r6f_A 580 PGAGIHGGEVVAAGTPEEVMND 601 (972)
T ss_dssp SSSGGGCCSEEEEECTTTTTTC
T ss_pred CCccCCCCEEEEecCHHHHHhh
Confidence 79999999999988653
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=4.9e-20 Score=182.32 Aligned_cols=112 Identities=19% Similarity=0.223 Sum_probs=80.0
Q ss_pred EEEeeEEEEEecCCCChHHHHHhhhcCCChhh------------hcHHH-------H-------------------H---
Q 047286 502 IVFEHTVALVGENGNGKSTVISLAERFHNPEQ------------VIYSW-------I-------------------I--- 540 (632)
Q Consensus 502 I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~------------~~~~~-------~-------------------~--- 540 (632)
|.-++++||+||||||||||+++|.|+++|++ ..... . +
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~ 107 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELP 107 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHH
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHH
Confidence 33345899999999999999999999998853 00000 0 0
Q ss_pred ---------------HHHHHHHhcCCCccCccc-ccCCCCCChHHHHHHHHHHHHhh-----------------------
Q 047286 541 ---------------IKCTNFIASLPQGSDLNV-GERGLQLSGGLKQRIARTRARNY----------------------- 581 (632)
Q Consensus 541 ---------------~~~~~~i~~lp~g~dt~v-ge~G~~LSgGQrQRiaiARA~~~----------------------- 581 (632)
..+.+.+..+ |++... .....+||||||||++||||+..
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~ 185 (235)
T 3tif_A 108 LIFKYRGAMSGEERRKRALECLKMA--ELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIM 185 (235)
T ss_dssp HHTCSSSCCCHHHHHHHHHHHHHHT--TCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHH
T ss_pred HHhhhccCCCHHHHHHHHHHHHHHC--CCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence 0011222221 333222 45677899999999999999554
Q ss_pred --------------hccccchhhhhcCCEEEEEeCCeEeeecChHHHh
Q 047286 582 --------------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALM 615 (632)
Q Consensus 582 --------------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~ 615 (632)
+++||.+...+.||+|++|++|+|++.|+-+++.
T Consensus 186 ~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 233 (235)
T 3tif_A 186 QLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRGFD 233 (235)
T ss_dssp HHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC---
T ss_pred HHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhhhc
Confidence 7889999988899999999999999999877654
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.80 E-value=3.4e-20 Score=184.15 Aligned_cols=116 Identities=23% Similarity=0.254 Sum_probs=88.2
Q ss_pred cEEEeeEEEEEecCCCChHHHHHhhhcCCChhh---------h---cHHHH-----------------------H-----
Q 047286 501 DIVFEHTVALVGENGNGKSTVISLAERFHNPEQ---------V---IYSWI-----------------------I----- 540 (632)
Q Consensus 501 ~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~---~~~~~-----------------------~----- 540 (632)
+|+-++++||+||||||||||+++|.|+++|++ + ..... +
T Consensus 28 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~ 107 (240)
T 1ji0_A 28 KVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAY 107 (240)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGT
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhh
Confidence 344445899999999999999999999998743 0 00000 0
Q ss_pred ---------HHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh------------------------------
Q 047286 541 ---------IKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY------------------------------ 581 (632)
Q Consensus 541 ---------~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~------------------------------ 581 (632)
..+.+.+..++ |++........+||||||||++||||+..
T Consensus 108 ~~~~~~~~~~~~~~~l~~~~-~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~ 186 (240)
T 1ji0_A 108 NRKDKEGIKRDLEWIFSLFP-RLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKIN 186 (240)
T ss_dssp TCCCSSHHHHHHHHHHHHCH-HHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcc-cHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 01223344443 56666677788999999999999999654
Q ss_pred ------hccccchhhh-hcCCEEEEEeCCeEeeecChHHHhcc
Q 047286 582 ------CGCGSPPYHY-KNADITSVVKNGVIAEKGRHDALMKI 617 (632)
Q Consensus 582 ------~~iahrl~~~-~~aD~I~vl~~G~ive~G~h~eL~~~ 617 (632)
+++||.+..+ +.||+|++|++|+|++.|+++++++.
T Consensus 187 ~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 229 (240)
T 1ji0_A 187 QEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp HTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred HCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC
Confidence 6789999766 57999999999999999999999863
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.80 E-value=5.3e-20 Score=185.25 Aligned_cols=114 Identities=23% Similarity=0.259 Sum_probs=84.2
Q ss_pred EEEeeEEEEEecCCCChHHHHHhhhcCCChhh------------hcHHHH----------------------H-------
Q 047286 502 IVFEHTVALVGENGNGKSTVISLAERFHNPEQ------------VIYSWI----------------------I------- 540 (632)
Q Consensus 502 I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~------------~~~~~~----------------------~------- 540 (632)
|.-++++||+||||||||||+++|.|+++|++ ...... +
T Consensus 34 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~ 113 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPY 113 (266)
T ss_dssp EETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhc
Confidence 33345899999999999999999999998853 001000 0
Q ss_pred ------HHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHh-------h--------------------------
Q 047286 541 ------IKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARN-------Y-------------------------- 581 (632)
Q Consensus 541 ------~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~-------~-------------------------- 581 (632)
..+.+.+..+ |+.........+||||||||++||||+. .
T Consensus 114 ~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~ 191 (266)
T 4g1u_C 114 GGSQDRQALQQVMAQT--DCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLR 191 (266)
T ss_dssp CSTTHHHHHHHHHHHT--TCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHc--CChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHH
Confidence 0112222222 2333333445689999999999999976 4
Q ss_pred ----------hccccchhhhh-cCCEEEEEeCCeEeeecChHHHhcc
Q 047286 582 ----------CGCGSPPYHYK-NADITSVVKNGVIAEKGRHDALMKI 617 (632)
Q Consensus 582 ----------~~iahrl~~~~-~aD~I~vl~~G~ive~G~h~eL~~~ 617 (632)
+++||.++.+. .||+|++|++|+|++.|++++++..
T Consensus 192 ~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~ 238 (266)
T 4g1u_C 192 QLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLNA 238 (266)
T ss_dssp HHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHCCH
T ss_pred HHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHhCc
Confidence 67899999886 6999999999999999999999864
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-19 Score=189.84 Aligned_cols=119 Identities=25% Similarity=0.257 Sum_probs=87.9
Q ss_pred EEEeeEEEEEecCCCChHHHHHhhhcCCChhh--------------------------------hc------HHHH----
Q 047286 502 IVFEHTVALVGENGNGKSTVISLAERFHNPEQ--------------------------------VI------YSWI---- 539 (632)
Q Consensus 502 I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~--------------------------------~~------~~~~---- 539 (632)
|+-+++++|+||||||||||+++|.|+++|++ +. ....
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~ 105 (362)
T 2it1_A 26 IKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKA 105 (362)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHTTC
T ss_pred ECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhcCC
Confidence 33345899999999999999999999988743 00 0000
Q ss_pred -----HHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh---------------------------------
Q 047286 540 -----IIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY--------------------------------- 581 (632)
Q Consensus 540 -----~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~--------------------------------- 581 (632)
...+.+.+..+ |++........+||||||||+|||||+..
T Consensus 106 ~~~~~~~~v~~~l~~~--~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~ 183 (362)
T 2it1_A 106 PREEIDKKVREVAKML--HIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKEL 183 (362)
T ss_dssp CHHHHHHHHHHHHHHT--TCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHc--CCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhC
Confidence 01122333333 44444455667899999999999999554
Q ss_pred ----hccccchhhh-hcCCEEEEEeCCeEeeecChHHHhccCCchh
Q 047286 582 ----CGCGSPPYHY-KNADITSVVKNGVIAEKGRHDALMKITDGTY 622 (632)
Q Consensus 582 ----~~iahrl~~~-~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y 622 (632)
+++||.+..+ +.||+|++|++|+|++.|+++|+++++...|
T Consensus 184 g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~p~~~~ 229 (362)
T 2it1_A 184 GITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKPKYKF 229 (362)
T ss_dssp TCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBHH
T ss_pred CCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccchH
Confidence 7789998876 5799999999999999999999998644344
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.6e-19 Score=188.03 Aligned_cols=120 Identities=21% Similarity=0.267 Sum_probs=88.5
Q ss_pred cEEEeeEEEEEecCCCChHHHHHhhhcCCChhh---------h-----------------------cH------HHH---
Q 047286 501 DIVFEHTVALVGENGNGKSTVISLAERFHNPEQ---------V-----------------------IY------SWI--- 539 (632)
Q Consensus 501 ~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~-----------------------~~------~~~--- 539 (632)
+|+-+++++|+||||||||||+++|.|+++|++ + .. ...
T Consensus 37 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~ 116 (355)
T 1z47_A 37 QIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKR 116 (355)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTT
T ss_pred EECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHcC
Confidence 444456999999999999999999999988743 0 00 000
Q ss_pred ------HHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh--------------------------------
Q 047286 540 ------IIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY-------------------------------- 581 (632)
Q Consensus 540 ------~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~-------------------------------- 581 (632)
...+.+.+..+ |++........+||||||||+|||||+..
T Consensus 117 ~~~~~~~~~v~~~l~~~--gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~ 194 (355)
T 1z47_A 117 VPKDEMDARVRELLRFM--RLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDE 194 (355)
T ss_dssp CCHHHHHHHHHHHHHHT--TCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHc--CChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 01122333333 44444455667899999999999999554
Q ss_pred -----hccccchhhh-hcCCEEEEEeCCeEeeecChHHHhccCCchh
Q 047286 582 -----CGCGSPPYHY-KNADITSVVKNGVIAEKGRHDALMKITDGTY 622 (632)
Q Consensus 582 -----~~iahrl~~~-~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y 622 (632)
+++||.+..+ +.||+|++|++|+|++.|+++|+++++...|
T Consensus 195 ~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~ 241 (355)
T 1z47_A 195 MGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPGTLF 241 (355)
T ss_dssp HTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSSHH
T ss_pred cCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccchH
Confidence 7789999877 4699999999999999999999997643344
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-19 Score=189.42 Aligned_cols=118 Identities=24% Similarity=0.237 Sum_probs=87.3
Q ss_pred EEeeEEEEEecCCCChHHHHHhhhcCCChhh---------h-----------------------cHHHHH----------
Q 047286 503 VFEHTVALVGENGNGKSTVISLAERFHNPEQ---------V-----------------------IYSWII---------- 540 (632)
Q Consensus 503 ~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~-----------------------~~~~~~---------- 540 (632)
+-+++++|+||||||||||+++|.|+++|++ + .....+
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~ 106 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRIS 106 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSSCSH
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCC
Confidence 3345899999999999999999999988743 0 000000
Q ss_pred -----HHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh----------------------------------
Q 047286 541 -----IKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY---------------------------------- 581 (632)
Q Consensus 541 -----~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~---------------------------------- 581 (632)
..+.+.+..+ |++........+||||||||+|||||+..
T Consensus 107 ~~~~~~~v~~~l~~~--~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g 184 (359)
T 2yyz_A 107 KDEVEKRVVEIARKL--LIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELG 184 (359)
T ss_dssp HHHTTHHHHHHHHHT--TCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHc--CCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 0122333333 44444455567899999999999999554
Q ss_pred ---hccccchhhh-hcCCEEEEEeCCeEeeecChHHHhccCCchh
Q 047286 582 ---CGCGSPPYHY-KNADITSVVKNGVIAEKGRHDALMKITDGTY 622 (632)
Q Consensus 582 ---~~iahrl~~~-~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y 622 (632)
+++||.+..+ +.||+|++|++|+|++.|+++|+++++...|
T Consensus 185 ~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~ 229 (359)
T 2yyz_A 185 ITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPKNMF 229 (359)
T ss_dssp CEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBHH
T ss_pred CEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcccHH
Confidence 6789998876 5799999999999999999999998644344
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.3e-19 Score=179.98 Aligned_cols=111 Identities=23% Similarity=0.298 Sum_probs=83.9
Q ss_pred eeEEEEEecCCCChHHHHHhhhcCCChhh---------hc-----HHHH----------------------H--------
Q 047286 505 EHTVALVGENGNGKSTVISLAERFHNPEQ---------VI-----YSWI----------------------I-------- 540 (632)
Q Consensus 505 ~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~~-----~~~~----------------------~-------- 540 (632)
++++||+||||||||||+++|.|+++|++ +. .... +
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~ 129 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVR 129 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHc
Confidence 34899999999999999999999988743 10 0000 0
Q ss_pred --------HHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh-------------------------------
Q 047286 541 --------IKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY------------------------------- 581 (632)
Q Consensus 541 --------~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~------------------------------- 581 (632)
..+.+.+..+ |++........+||||||||++||||++.
T Consensus 130 ~~~~~~~~~~~~~~l~~~--~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~ 207 (263)
T 2olj_A 130 KWPREKAEAKAMELLDKV--GLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN 207 (263)
T ss_dssp CCCHHHHHHHHHHHHHHT--TCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHC--CCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh
Confidence 0111222222 34444455667899999999999999654
Q ss_pred -----hccccchhhhh-cCCEEEEEeCCeEeeecChHHHhcc
Q 047286 582 -----CGCGSPPYHYK-NADITSVVKNGVIAEKGRHDALMKI 617 (632)
Q Consensus 582 -----~~iahrl~~~~-~aD~I~vl~~G~ive~G~h~eL~~~ 617 (632)
+++||.++.+. .||+|++|++|+|++.|+++++++.
T Consensus 208 ~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
T 2olj_A 208 EGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249 (263)
T ss_dssp TTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred CCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 68899999886 6999999999999999999999875
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.7e-19 Score=189.21 Aligned_cols=116 Identities=20% Similarity=0.212 Sum_probs=87.1
Q ss_pred eeEEEEEecCCCChHHHHHhhhcCCChhh---------h-----------------------cHHHH-------------
Q 047286 505 EHTVALVGENGNGKSTVISLAERFHNPEQ---------V-----------------------IYSWI------------- 539 (632)
Q Consensus 505 ~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~-----------------------~~~~~------------- 539 (632)
+++++|+||||||||||+++|.|+++|++ + .....
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~ 116 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKD 116 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--CCCHH
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHH
Confidence 35899999999999999999999988743 0 00000
Q ss_pred --HHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh------------------------------------
Q 047286 540 --IIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY------------------------------------ 581 (632)
Q Consensus 540 --~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~------------------------------------ 581 (632)
...+.+.+..+ |++........+||||||||+|||||+..
T Consensus 117 ~~~~~v~~~l~~~--~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~t 194 (372)
T 1v43_A 117 EIDKRVRWAAELL--QIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVT 194 (372)
T ss_dssp HHHHHHHHHHHHT--TCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHHHHc--CChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCE
Confidence 01122333333 44444555677999999999999999554
Q ss_pred -hccccchhhh-hcCCEEEEEeCCeEeeecChHHHhccCCchh
Q 047286 582 -CGCGSPPYHY-KNADITSVVKNGVIAEKGRHDALMKITDGTY 622 (632)
Q Consensus 582 -~~iahrl~~~-~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y 622 (632)
+++||.+..+ +.||+|++|++|+|++.|+++++++++...|
T Consensus 195 vi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~ 237 (372)
T 1v43_A 195 TIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVF 237 (372)
T ss_dssp EEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSBHH
T ss_pred EEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcccHH
Confidence 7789998876 5799999999999999999999998644444
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.79 E-value=2.6e-19 Score=177.38 Aligned_cols=114 Identities=25% Similarity=0.303 Sum_probs=85.9
Q ss_pred cEEEeeEEEEEecCCCChHHHHHhhhcCCChhh---------h-----------------------cHHHH---------
Q 047286 501 DIVFEHTVALVGENGNGKSTVISLAERFHNPEQ---------V-----------------------IYSWI--------- 539 (632)
Q Consensus 501 ~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~-----------------------~~~~~--------- 539 (632)
+|+- +++||+||||||||||+++|.|+++|++ + .....
T Consensus 21 ~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~ 99 (240)
T 2onk_A 21 EMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVE 99 (240)
T ss_dssp EECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSC
T ss_pred EECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHcC
Confidence 4555 6899999999999999999999988743 0 00000
Q ss_pred ----HHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh----------------------------------
Q 047286 540 ----IIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY---------------------------------- 581 (632)
Q Consensus 540 ----~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~---------------------------------- 581 (632)
...+.+.+..+ |++........+||||||||++||||+..
T Consensus 100 ~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g 177 (240)
T 2onk_A 100 RVERDRRVREMAEKL--GIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFD 177 (240)
T ss_dssp HHHHHHHHHHHHHTT--TCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHc--CCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 01122334433 44444455567899999999999999554
Q ss_pred ---hccccchhhh-hcCCEEEEEeCCeEeeecChHHHhcc
Q 047286 582 ---CGCGSPPYHY-KNADITSVVKNGVIAEKGRHDALMKI 617 (632)
Q Consensus 582 ---~~iahrl~~~-~~aD~I~vl~~G~ive~G~h~eL~~~ 617 (632)
+++||.+..+ +.||+|++|++|+|++.|+++++++.
T Consensus 178 ~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 217 (240)
T 2onk_A 178 VPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSA 217 (240)
T ss_dssp CCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred CEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 6789999876 56999999999999999999999875
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=7.9e-19 Score=200.93 Aligned_cols=77 Identities=21% Similarity=0.293 Sum_probs=67.6
Q ss_pred hhhHhhCCccccccc-------------------ccCCCCHHHHHHHHHHHHHHhC-CceEEEEecCchHHhhcCeEEEE
Q 047286 170 EKSIDKLPLGLDTVV-------------------ATNAVDAQSERIVQAAMVKLVT-NQTVVIVANCLITIRNADCIIMV 229 (632)
Q Consensus 170 ~~~i~~l~~g~~~~v-------------------~ts~LD~~~~~~i~~~l~~~~~-~~tviiitH~~~~~~~aD~i~vl 229 (632)
+.....||+|..++| +|++||+...+.+.+.|+++++ +.|+|+|+|+++.+..||+|++|
T Consensus 374 ~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl~~l~~aD~ii~l 453 (842)
T 2vf7_A 374 DRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDLDVIRRADWLVDV 453 (842)
T ss_dssp TCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHTTCSEEEEE
T ss_pred cCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEe
Confidence 345778888987766 3899999999999999999864 78999999999988889999999
Q ss_pred ------eCCeEEEecChhHHhcC
Q 047286 230 ------SKGKIVEKGTHDELIED 246 (632)
Q Consensus 230 ------~~G~i~~~g~~~el~~~ 246 (632)
++|+++..|+++++.+.
T Consensus 454 gpgaG~~~G~iv~~g~~~~~~~~ 476 (842)
T 2vf7_A 454 GPEAGEKGGEILYSGPPEGLKHV 476 (842)
T ss_dssp CSSSGGGCCSEEEEECGGGGGGC
T ss_pred CCCcccCCCEEEEecCHHHHHhc
Confidence 79999999999998754
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.78 E-value=3.7e-19 Score=178.90 Aligned_cols=113 Identities=20% Similarity=0.317 Sum_probs=84.6
Q ss_pred EEeeEEEEEecCCCChHHHHHhhhcCCChhh---------hc-------------H----HHH-----------------
Q 047286 503 VFEHTVALVGENGNGKSTVISLAERFHNPEQ---------VI-------------Y----SWI----------------- 539 (632)
Q Consensus 503 ~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~~-------------~----~~~----------------- 539 (632)
+-++++||+||||||||||+++|.|+++|++ +. . ...
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~lt 109 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMT 109 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEecCcccCCCCc
Confidence 3345899999999999999999999988753 11 0 000
Q ss_pred H-HH-------------------HHHHHhcCCCccCcc-cccCCCCCChHHHHHHHHHHHHhh-----------------
Q 047286 540 I-IK-------------------CTNFIASLPQGSDLN-VGERGLQLSGGLKQRIARTRARNY----------------- 581 (632)
Q Consensus 540 ~-~~-------------------~~~~i~~lp~g~dt~-vge~G~~LSgGQrQRiaiARA~~~----------------- 581 (632)
+ .+ +.+.+..+ |++.. ......+||||||||++||||+..
T Consensus 110 v~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~--~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~ 187 (262)
T 1b0u_A 110 VLENVMEAPIQVLGLSKHDARERALKYLAKV--GIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPE 187 (262)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHT--TCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHH
T ss_pred HHHHHHhhHHHhcCCCHHHHHHHHHHHHHHc--CCCchhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHH
Confidence 0 00 11222222 34444 455677899999999999999654
Q ss_pred -------------------hccccchhhhh-cCCEEEEEeCCeEeeecChHHHhcc
Q 047286 582 -------------------CGCGSPPYHYK-NADITSVVKNGVIAEKGRHDALMKI 617 (632)
Q Consensus 582 -------------------~~iahrl~~~~-~aD~I~vl~~G~ive~G~h~eL~~~ 617 (632)
+++||.++.+. .||+|++|++|+|++.|+++++++.
T Consensus 188 ~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 243 (262)
T 1b0u_A 188 LVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGN 243 (262)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 78899999886 6999999999999999999999875
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.78 E-value=2.5e-19 Score=179.23 Aligned_cols=110 Identities=20% Similarity=0.285 Sum_probs=82.8
Q ss_pred eeEEEEEecCCCChHHHHHhhhcCCChhh---------hc--HHHH----------------------H-----------
Q 047286 505 EHTVALVGENGNGKSTVISLAERFHNPEQ---------VI--YSWI----------------------I----------- 540 (632)
Q Consensus 505 ~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~~--~~~~----------------------~----------- 540 (632)
++++||+||||||||||+++|.|+++|++ +. .... +
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~ 120 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSS 120 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCH
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCCh
Confidence 35899999999999999999999988743 00 0000 0
Q ss_pred ----HHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh-----------------------------------
Q 047286 541 ----IKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY----------------------------------- 581 (632)
Q Consensus 541 ----~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~----------------------------------- 581 (632)
..+.+.+..+ |++........+||||||||++||||+..
T Consensus 121 ~~~~~~~~~~l~~~--gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~t 198 (256)
T 1vpl_A 121 SEIEEMVERATEIA--GLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLT 198 (256)
T ss_dssp HHHHHHHHHHHHHH--CCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHHC--CCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCE
Confidence 0111222222 44444455667899999999999999654
Q ss_pred -hccccchhhhhc-CCEEEEEeCCeEeeecChHHHhc
Q 047286 582 -CGCGSPPYHYKN-ADITSVVKNGVIAEKGRHDALMK 616 (632)
Q Consensus 582 -~~iahrl~~~~~-aD~I~vl~~G~ive~G~h~eL~~ 616 (632)
+++||.++.+.. ||+|++|++|+|++.|+++++.+
T Consensus 199 iiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 199 ILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp EEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred EEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 678999999876 99999999999999999999975
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=99.78 E-value=3.4e-19 Score=175.02 Aligned_cols=109 Identities=21% Similarity=0.263 Sum_probs=80.1
Q ss_pred cEEEeeEEEEEecCCCChHHHHHhhhcCCChhh---------h---cHH-------HH-------------------H--
Q 047286 501 DIVFEHTVALVGENGNGKSTVISLAERFHNPEQ---------V---IYS-------WI-------------------I-- 540 (632)
Q Consensus 501 ~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~---~~~-------~~-------------------~-- 540 (632)
+|+-++++||+||||||||||+++|.|+++|++ + ... .. +
T Consensus 26 ~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~ 105 (224)
T 2pcj_A 26 SVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIV 105 (224)
T ss_dssp EEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHH
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHh
Confidence 344446899999999999999999999988743 1 000 00 0
Q ss_pred -------------HHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh--------------------------
Q 047286 541 -------------IKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY-------------------------- 581 (632)
Q Consensus 541 -------------~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~-------------------------- 581 (632)
..+.+.+..+ |++........+||||||||++||||+..
T Consensus 106 ~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l 183 (224)
T 2pcj_A 106 PMLKMGKPKKEAKERGEYLLSEL--GLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIF 183 (224)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHT--TCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence 0111223322 34444455667899999999999999544
Q ss_pred ----------hccccchhhhhcCCEEEEEeCCeEeeecCh
Q 047286 582 ----------CGCGSPPYHYKNADITSVVKNGVIAEKGRH 611 (632)
Q Consensus 582 ----------~~iahrl~~~~~aD~I~vl~~G~ive~G~h 611 (632)
+++||.++.++.||+|++|++|+|++.|+.
T Consensus 184 ~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~~ 223 (224)
T 2pcj_A 184 LKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEITR 223 (224)
T ss_dssp HHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEeee
Confidence 788999998888999999999999999873
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.7e-19 Score=179.48 Aligned_cols=111 Identities=22% Similarity=0.185 Sum_probs=82.7
Q ss_pred cEEEeeEEEEEecCCCChHHHHHhhhcCCChhh---------h---cHHH-HH---------------------------
Q 047286 501 DIVFEHTVALVGENGNGKSTVISLAERFHNPEQ---------V---IYSW-II--------------------------- 540 (632)
Q Consensus 501 ~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~---~~~~-~~--------------------------- 540 (632)
+|+-++++||+||||||||||+++|.|+++|++ + .... ..
T Consensus 29 ~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~ 108 (257)
T 1g6h_A 29 SVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEI 108 (257)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGT
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHh
Confidence 444456899999999999999999999988743 1 0000 00
Q ss_pred -----------------------HHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh----------------
Q 047286 541 -----------------------IKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY---------------- 581 (632)
Q Consensus 541 -----------------------~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~---------------- 581 (632)
..+.+.+..+ |++........+||||||||++||||+..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~ 186 (257)
T 1g6h_A 109 CPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL--KLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAP 186 (257)
T ss_dssp STTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHT--TCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCH
T ss_pred hhccCcccccccccccCCHHHHHHHHHHHHHHc--CCchhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCH
Confidence 0011222222 34444455677899999999999999654
Q ss_pred --------------------hccccchhhhh-cCCEEEEEeCCeEeeecChHH
Q 047286 582 --------------------CGCGSPPYHYK-NADITSVVKNGVIAEKGRHDA 613 (632)
Q Consensus 582 --------------------~~iahrl~~~~-~aD~I~vl~~G~ive~G~h~e 613 (632)
+++||+++.+. .||+|++|++|+|++.|++++
T Consensus 187 ~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 187 GLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239 (257)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeCHHH
Confidence 67899999875 699999999999999999999
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=99.77 E-value=2.7e-19 Score=186.15 Aligned_cols=119 Identities=22% Similarity=0.260 Sum_probs=87.1
Q ss_pred EEEeeEEEEEecCCCChHHHHHhhhcCCChhh---------h---cHHHH--------------------H---------
Q 047286 502 IVFEHTVALVGENGNGKSTVISLAERFHNPEQ---------V---IYSWI--------------------I--------- 540 (632)
Q Consensus 502 I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~---~~~~~--------------------~--------- 540 (632)
|+-+++++|+||||||||||+++|.|+++|++ + ..... +
T Consensus 23 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~ 102 (348)
T 3d31_A 23 VESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKI 102 (348)
T ss_dssp ECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCC
T ss_pred EcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCC
Confidence 33345899999999999999999999998743 0 00000 0
Q ss_pred ---HHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh------------------------------------
Q 047286 541 ---IKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY------------------------------------ 581 (632)
Q Consensus 541 ---~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~------------------------------------ 581 (632)
..+.+.+..+ |++........+||||||||+|||||+..
T Consensus 103 ~~~~~v~~~l~~~--~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~t 180 (348)
T 3d31_A 103 KDPKRVLDTARDL--KIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLT 180 (348)
T ss_dssp CCHHHHHHHHHHT--TCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHc--CCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 0122333332 34444445567899999999999999544
Q ss_pred -hccccchhhh-hcCCEEEEEeCCeEeeecChHHHhccCCchh
Q 047286 582 -CGCGSPPYHY-KNADITSVVKNGVIAEKGRHDALMKITDGTY 622 (632)
Q Consensus 582 -~~iahrl~~~-~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y 622 (632)
+++||.+..+ +.||+|++|++|+|++.|+++|+++++...|
T Consensus 181 ii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p~~~~ 223 (348)
T 3d31_A 181 VLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGR 223 (348)
T ss_dssp EEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTH
T ss_pred EEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCcccHH
Confidence 6789998865 5799999999999999999999998644434
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=2.8e-19 Score=186.65 Aligned_cols=119 Identities=21% Similarity=0.228 Sum_probs=86.8
Q ss_pred EEEeeEEEEEecCCCChHHHHHhhhcCCChhh---------hc------H-HHH---------------------H----
Q 047286 502 IVFEHTVALVGENGNGKSTVISLAERFHNPEQ---------VI------Y-SWI---------------------I---- 540 (632)
Q Consensus 502 I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~~------~-~~~---------------------~---- 540 (632)
|+-++++||+||||||||||+++|.|+++|++ +. . ... +
T Consensus 28 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~ 107 (353)
T 1oxx_K 28 IENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPL 107 (353)
T ss_dssp ECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGG
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHH
Confidence 33345899999999999999999999988743 00 0 000 0
Q ss_pred -----------HHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh----------------------------
Q 047286 541 -----------IKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY---------------------------- 581 (632)
Q Consensus 541 -----------~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~---------------------------- 581 (632)
..+.+.+..+ |++........+||||||||+|||||+..
T Consensus 108 ~~~~~~~~~~~~~v~~~l~~~--~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~ 185 (353)
T 1oxx_K 108 TNMKMSKEEIRKRVEEVAKIL--DIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKE 185 (353)
T ss_dssp TTSSCCHHHHHHHHHHHHHHT--TCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHc--CCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 0122233332 34433445567899999999999999554
Q ss_pred ---------hccccchhhh-hcCCEEEEEeCCeEeeecChHHHhccCCchh
Q 047286 582 ---------CGCGSPPYHY-KNADITSVVKNGVIAEKGRHDALMKITDGTY 622 (632)
Q Consensus 582 ---------~~iahrl~~~-~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y 622 (632)
+++||.++.+ +.||+|++|++|+|++.|+++|+++++...|
T Consensus 186 l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~ 236 (353)
T 1oxx_K 186 VQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQ 236 (353)
T ss_dssp HHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSSHH
T ss_pred HHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcccHH
Confidence 6789999876 4699999999999999999999997644444
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.7e-19 Score=199.35 Aligned_cols=158 Identities=14% Similarity=0.120 Sum_probs=118.3
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHH--hhcceEEEcccCccc-ccccccccccccC-CC-CCCHHHH
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEA--EQEKIGLVSKEPIFL-FCDFNEGQYIPYG-KQ-NASDEHI 160 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~--~r~~i~~v~Q~~~~~-~~~~~~~~~i~~~-~~-~~~~~~~ 160 (632)
++|+|++||+++|+||||||||||+++|.|+....... +...++|++|++..+ ..++ ++++... .. ....+.+
T Consensus 305 ~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv--~~~~~~~~~~~~~~~~~~ 382 (538)
T 1yqt_A 305 EPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTV--YELLSKIDASKLNSNFYK 382 (538)
T ss_dssp CCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBH--HHHHHHHHHHHHTCHHHH
T ss_pred CccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcH--HHHHHhhhccCCCHHHHH
Confidence 34456899999999999999999999999764322211 245799999998643 2333 2243321 00 0124456
Q ss_pred HHHHHHccch----hhHhhCCccccccc-----------------ccCCCCHHHHHHHHHHHHHHh--CCceEEEEecCc
Q 047286 161 RPAVQLANAE----KSIDKLPLGLDTVV-----------------ATNAVDAQSERIVQAAMVKLV--TNQTVVIVANCL 217 (632)
Q Consensus 161 ~~~~~~~~l~----~~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l~~~~--~~~tviiitH~~ 217 (632)
.++++..++. +.+..||+|.++++ +|++||+.++..+.+.|+++. .+.|+|+||||+
T Consensus 383 ~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~ 462 (538)
T 1yqt_A 383 TELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV 462 (538)
T ss_dssp HHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred HHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 6667766654 34678999999888 399999999999999999985 388999999999
Q ss_pred hHHhh-cCeEEEEeC--CeEEEecChhHHhc
Q 047286 218 ITIRN-ADCIIMVSK--GKIVEKGTHDELIE 245 (632)
Q Consensus 218 ~~~~~-aD~i~vl~~--G~i~~~g~~~el~~ 245 (632)
+.+.. ||||++|++ |+++..|+++++..
T Consensus 463 ~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 463 LMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp HHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred HHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 98865 999999986 78888999888753
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=99.77 E-value=4.6e-19 Score=186.21 Aligned_cols=120 Identities=23% Similarity=0.299 Sum_probs=87.5
Q ss_pred cEEEeeEEEEEecCCCChHHHHHhhhcCCChhh---------hc-------H-HHH---------------------H--
Q 047286 501 DIVFEHTVALVGENGNGKSTVISLAERFHNPEQ---------VI-------Y-SWI---------------------I-- 540 (632)
Q Consensus 501 ~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~~-------~-~~~---------------------~-- 540 (632)
+|+-+++++|+||||||||||+++|.|+++|++ +. . ... +
T Consensus 25 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~ 104 (372)
T 1g29_1 25 EVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAF 104 (372)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHH
T ss_pred EEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHH
Confidence 344446899999999999999999999987743 00 0 000 0
Q ss_pred -------------HHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh--------------------------
Q 047286 541 -------------IKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY-------------------------- 581 (632)
Q Consensus 541 -------------~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~-------------------------- 581 (632)
..+.+.+..+ |++........+||||||||+|||||+..
T Consensus 105 ~~~~~~~~~~~~~~~v~~~l~~~--~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l 182 (372)
T 1g29_1 105 PLKLRKVPRQEIDQRVREVAELL--GLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAEL 182 (372)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHH--TCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHC--CCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHH
Confidence 0112223222 34444445567899999999999999654
Q ss_pred -----------hccccchhhh-hcCCEEEEEeCCeEeeecChHHHhccCCchh
Q 047286 582 -----------CGCGSPPYHY-KNADITSVVKNGVIAEKGRHDALMKITDGTY 622 (632)
Q Consensus 582 -----------~~iahrl~~~-~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y 622 (632)
+++||.+..+ +.||+|++|++|+|++.|+++|+++++...|
T Consensus 183 ~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~ 235 (372)
T 1g29_1 183 KKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTF 235 (372)
T ss_dssp HHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBHH
T ss_pred HHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHHhCcccHH
Confidence 7889998877 4699999999999999999999998644444
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=99.77 E-value=2.8e-19 Score=199.71 Aligned_cols=158 Identities=15% Similarity=0.136 Sum_probs=119.7
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHH--hhcceEEEcccCccc-ccccccccccccC-CC-CCCHHHH
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEA--EQEKIGLVSKEPIFL-FCDFNEGQYIPYG-KQ-NASDEHI 160 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~--~r~~i~~v~Q~~~~~-~~~~~~~~~i~~~-~~-~~~~~~~ 160 (632)
++++|++||+++|+||||||||||+++|.|+....... ++.+++|++|++..+ ..++.+ ++... .. ....+.+
T Consensus 375 ~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e--~~~~~~~~~~~~~~~~ 452 (607)
T 3bk7_A 375 EPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYE--LLSKIDSSKLNSNFYK 452 (607)
T ss_dssp CCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHH--HHHHHHHHHHHCHHHH
T ss_pred cccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHH--HHHhhhccCCCHHHHH
Confidence 34457999999999999999999999999764332222 246799999998543 234432 44322 00 0123456
Q ss_pred HHHHHHccch----hhHhhCCcccccccc-----------------cCCCCHHHHHHHHHHHHHHh--CCceEEEEecCc
Q 047286 161 RPAVQLANAE----KSIDKLPLGLDTVVA-----------------TNAVDAQSERIVQAAMVKLV--TNQTVVIVANCL 217 (632)
Q Consensus 161 ~~~~~~~~l~----~~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~~l~~~~--~~~tviiitH~~ 217 (632)
.++++..++. ..+.+||+|.+++++ |++||+.++..+.+.|+++. .+.|+|+||||+
T Consensus 453 ~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~ 532 (607)
T 3bk7_A 453 TELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV 532 (607)
T ss_dssp HHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred HHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 7777777764 346789999998883 99999999999999999984 478999999999
Q ss_pred hHHhh-cCeEEEEeC--CeEEEecChhHHhc
Q 047286 218 ITIRN-ADCIIMVSK--GKIVEKGTHDELIE 245 (632)
Q Consensus 218 ~~~~~-aD~i~vl~~--G~i~~~g~~~el~~ 245 (632)
..+.. ||||++|++ |++...|+++++..
T Consensus 533 ~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 533 LMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp HHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred HHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 98865 999999986 88888999888754
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=6.8e-21 Score=194.18 Aligned_cols=180 Identities=14% Similarity=0.145 Sum_probs=132.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC--CC----------------------CcEEEEeeCCCEEEEEcCC
Q 047286 47 MPLGQTSLNVNAFAAGQAAACKMFETIERIPKINP--YD----------------------NRFLQHVPSGTTVALVGQS 102 (632)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~--~~----------------------~~~~~~i~~Ge~~~ivG~s 102 (632)
.++.+++..+..++++.+|++|+.++++.+++... .. ..+||+|++|++++|+|||
T Consensus 56 ~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~vL~~vsl~i~~Ge~vaIvGps 135 (305)
T 2v9p_A 56 KHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGEGSWKSILTFFNYQNIELITFINALKLWLKGIPKKNCLAFIGPP 135 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCSSCCTHHHHHHHHHTTCCHHHHHHHHHHHHHTCTTCSEEEEECSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCcccccCCeEEEEEEEEEcChhhhccceEEecCCCEEEEECCC
Confidence 45667788899999999999999999976432110 00 0168899999999999999
Q ss_pred CchHHHHHHHHHhCCCCCcHHhhcceEEEcccCcccccccccccccccCCCCCCHHHHHHHHHHc---cchhhHhhCCcc
Q 047286 103 GSGKSTVINLVESFRFYAPEAEQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLA---NAEKSIDKLPLG 179 (632)
Q Consensus 103 GsGKSTLl~ll~~~~~~~~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---~l~~~i~~l~~g 179 (632)
|||||||+++|.++. . -+-++|++|++.+|.+++.++ |+.++. +.++ .+.+.++.. +++ ...||+|
T Consensus 136 GsGKSTLl~lL~gl~---~---G~I~~~v~q~~~lf~~ti~~~-ni~~~~-~~~~-~~~~~i~~~L~~gld--g~~LSgG 204 (305)
T 2v9p_A 136 NTGKSMLCNSLIHFL---G---GSVLSFANHKSHFWLASLADT-RAALVD-DATH-ACWRYFDTYLRNALD--GYPVSID 204 (305)
T ss_dssp SSSHHHHHHHHHHHH---T---CEEECGGGTTSGGGGGGGTTC-SCEEEE-EECH-HHHHHHHHTTTGGGG--TCCEECC
T ss_pred CCcHHHHHHHHhhhc---C---ceEEEEecCccccccccHHHH-hhccCc-cccH-HHHHHHHHHhHccCC--ccCcCHH
Confidence 999999999998553 1 123678999999998887653 676652 2232 344444441 222 4578888
Q ss_pred cccccc-----------cCCCCHHHHHHHHHHHHHHhCCceEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHhcCCC
Q 047286 180 LDTVVA-----------TNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPE 248 (632)
Q Consensus 180 ~~~~v~-----------ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~~~~ 248 (632)
++++ + |++||+.+++.+.. +||++..++.||+| +|++|++++.|+++++ +
T Consensus 205 qkQR-ARAll~~p~iLlTs~LD~~~~~~i~~-------------ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el----~ 265 (305)
T 2v9p_A 205 RKHK-AAVQIKAPPLLVTSNIDVQAEDRYLY-------------LHSRVQTFRFEQPC-TDESGEQPFNITDADW----K 265 (305)
T ss_dssp CSSC-CCCEECCCCEEEEESSCSTTCGGGGG-------------GTTTEEEEECCCCC-CCC---CCCCCCHHHH----H
T ss_pred HHHH-HHHHhCCCCEEEECCCCHHHHHHHHH-------------HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH----H
Confidence 8776 4 99999999888752 29999988889999 9999999999999998 4
Q ss_pred cHHHHHHH
Q 047286 249 GAYSQLVR 256 (632)
Q Consensus 249 ~~~~~~~~ 256 (632)
+.|.+++.
T Consensus 266 ~~y~~l~~ 273 (305)
T 2v9p_A 266 SFFVRLWG 273 (305)
T ss_dssp HHHHHSTT
T ss_pred HHHHHHHH
Confidence 56666654
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-18 Score=173.75 Aligned_cols=121 Identities=22% Similarity=0.171 Sum_probs=88.7
Q ss_pred cEEEeeEEEEEecCCCChHHHHHhhhcCCChhhh---------------------cHHH-------------------HH
Q 047286 501 DIVFEHTVALVGENGNGKSTVISLAERFHNPEQV---------------------IYSW-------------------II 540 (632)
Q Consensus 501 ~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~~---------------------~~~~-------------------~~ 540 (632)
+|.-++++||+||||||||||+++|.|+++|++. .... ..
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~ 106 (253)
T 2nq2_C 27 DLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDY 106 (253)
T ss_dssp EEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHH
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHH
Confidence 4444568999999999999999999999887430 0000 00
Q ss_pred HHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh-------------------------------------hc
Q 047286 541 IKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY-------------------------------------CG 583 (632)
Q Consensus 541 ~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~-------------------------------------~~ 583 (632)
..+.+.+..+ |++........+||||||||++||||+.. ++
T Consensus 107 ~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~ 184 (253)
T 2nq2_C 107 QVAMQALDYL--NLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVF 184 (253)
T ss_dssp HHHHHHHHHT--TCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEE
T ss_pred HHHHHHHHHc--CChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 1122333333 45444556677999999999999999654 67
Q ss_pred cccchhhh-hcCCEEEEEeCCeEeeecChHHHhccCCchhHHHH
Q 047286 584 CGSPPYHY-KNADITSVVKNGVIAEKGRHDALMKITDGTYASLT 626 (632)
Q Consensus 584 iahrl~~~-~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~ 626 (632)
+||.++.+ +.||+|++|++|+ ++.|+++++++. ..+.+.+
T Consensus 185 vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~~~--~~~~~~~ 225 (253)
T 2nq2_C 185 TTHQPNQVVAIANKTLLLNKQN-FKFGETRNILTS--ENLTALF 225 (253)
T ss_dssp EESCHHHHHHHCSEEEEEETTE-EEEEEHHHHCCH--HHHHHHH
T ss_pred EecCHHHHHHhCCEEEEEeCCe-EecCCHHHHhCc--HHHHHHh
Confidence 89999988 5799999999999 999999999863 3344443
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=99.75 E-value=7.3e-19 Score=177.21 Aligned_cols=53 Identities=19% Similarity=0.152 Sum_probs=47.7
Q ss_pred CCChHHHHHHHHHHHHhh------------------------------------hccccchhhhhc--CCEEEEEeCCeE
Q 047286 564 QLSGGLKQRIARTRARNY------------------------------------CGCGSPPYHYKN--ADITSVVKNGVI 605 (632)
Q Consensus 564 ~LSgGQrQRiaiARA~~~------------------------------------~~iahrl~~~~~--aD~I~vl~~G~i 605 (632)
+||||||||++||||+.. +++||.+..+.. ||+|++|++|+|
T Consensus 164 ~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i 243 (267)
T 2zu0_C 164 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRI 243 (267)
T ss_dssp TCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEE
Confidence 599999999999999655 678999998875 899999999999
Q ss_pred eeecChHHHhc
Q 047286 606 AEKGRHDALMK 616 (632)
Q Consensus 606 ve~G~h~eL~~ 616 (632)
++.|+++++..
T Consensus 244 ~~~g~~~~~~~ 254 (267)
T 2zu0_C 244 VKSGDFTLVKQ 254 (267)
T ss_dssp EEEECTTHHHH
T ss_pred EEEcCHHHHhh
Confidence 99999998754
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.7e-18 Score=193.03 Aligned_cols=159 Identities=17% Similarity=0.225 Sum_probs=121.4
Q ss_pred EEEEeeCC-----CEEEEEcCCCchHHHHHHHHHhCCCCCcHH--hhcceEEEcccCccc-ccccccccccccC--CCCC
Q 047286 86 FLQHVPSG-----TTVALVGQSGSGKSTVINLVESFRFYAPEA--EQEKIGLVSKEPIFL-FCDFNEGQYIPYG--KQNA 155 (632)
Q Consensus 86 ~~~~i~~G-----e~~~ivG~sGsGKSTLl~ll~~~~~~~~~~--~r~~i~~v~Q~~~~~-~~~~~~~~~i~~~--~~~~ 155 (632)
++|++++| |+++|+||||||||||+++|.|+....... .+..++|++|+.... ..++.+ ++... ....
T Consensus 366 vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e--~~~~~~~~~~~ 443 (608)
T 3j16_B 366 FVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQ--LFFKKIRGQFL 443 (608)
T ss_dssp CEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHH--HHHHHCSSTTT
T ss_pred eEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHH--HHHHHhhcccc
Confidence 78988888 889999999999999999999764332111 134699999986533 334433 33211 1122
Q ss_pred CHHHHHHHHHHccch----hhHhhCCcccccccc-----------------cCCCCHHHHHHHHHHHHHHh--CCceEEE
Q 047286 156 SDEHIRPAVQLANAE----KSIDKLPLGLDTVVA-----------------TNAVDAQSERIVQAAMVKLV--TNQTVVI 212 (632)
Q Consensus 156 ~~~~~~~~~~~~~l~----~~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~~l~~~~--~~~tvii 212 (632)
..+...++++..++. ..+.+||+|.+++++ |++||+.++..+.+.|+++. .+.|+|+
T Consensus 444 ~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tvii 523 (608)
T 3j16_B 444 NPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFI 523 (608)
T ss_dssp SHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred cHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 345566777777754 446789999998883 99999999999999999974 4899999
Q ss_pred EecCchHHhh-cCeEEEEeC--CeEEEecChhHHhcC
Q 047286 213 VANCLITIRN-ADCIIMVSK--GKIVEKGTHDELIED 246 (632)
Q Consensus 213 itH~~~~~~~-aD~i~vl~~--G~i~~~g~~~el~~~ 246 (632)
||||++.+.. ||||++|++ |+++..|++++++..
T Consensus 524 vtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 524 VEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp ECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred EeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 9999998865 999999996 999999999998753
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2e-18 Score=172.37 Aligned_cols=126 Identities=19% Similarity=0.111 Sum_probs=79.0
Q ss_pred cEEEeeEEEEEecCCCChHHHHHhhhcC--CChhh------------hcHHHH-----------------------HH--
Q 047286 501 DIVFEHTVALVGENGNGKSTVISLAERF--HNPEQ------------VIYSWI-----------------------II-- 541 (632)
Q Consensus 501 ~I~f~~~vaIVG~SGsGKSTL~~ll~r~--y~~~~------------~~~~~~-----------------------~~-- 541 (632)
+|.-++++||+||||||||||+++|.|+ +.|++ ...... +.
T Consensus 25 ~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~ 104 (250)
T 2d2e_A 25 VVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLA 104 (250)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHH
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHHH
Confidence 3444568999999999999999999998 66632 000000 00
Q ss_pred ----------------HHHHHHhcCCCccCccccc-CCCC-CChHHHHHHHHHHHHhh----------------------
Q 047286 542 ----------------KCTNFIASLPQGSDLNVGE-RGLQ-LSGGLKQRIARTRARNY---------------------- 581 (632)
Q Consensus 542 ----------------~~~~~i~~lp~g~dt~vge-~G~~-LSgGQrQRiaiARA~~~---------------------- 581 (632)
.+.+.+..+ |+++...+ ...+ ||||||||++||||+..
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l 182 (250)
T 2d2e_A 105 LQAKLGREVGVAEFWTKVKKALELL--DWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVV 182 (250)
T ss_dssp HHHHHTSCCCHHHHHHHHHHHHHHH--TCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHH
T ss_pred HHhhccccCCHHHHHHHHHHHHHHc--CCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHH
Confidence 001111111 44322222 2345 99999999999999655
Q ss_pred --------------hccccchhhhhc--CCEEEEEeCCeEeeecChHHHhccCCchhHHHHHh
Q 047286 582 --------------CGCGSPPYHYKN--ADITSVVKNGVIAEKGRHDALMKITDGTYASLTAL 628 (632)
Q Consensus 582 --------------~~iahrl~~~~~--aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~~~ 628 (632)
+++||+++.+.. ||+|++|++|+|++.|+++.......-.|..+.+.
T Consensus 183 ~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 245 (250)
T 2d2e_A 183 ARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPELALELEAKGYEWLKEK 245 (250)
T ss_dssp HHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHHHHHHHHHHCHHHHHHC
T ss_pred HHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHHHHHHHHHHHHHHHHhh
Confidence 788999998876 59999999999999999983322101226665543
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.3e-18 Score=173.52 Aligned_cols=114 Identities=20% Similarity=0.179 Sum_probs=83.6
Q ss_pred EEEeeEEEEEecCCCChHHHHHhhhcCCChhh---------hcHHHH-------------------H-HH----------
Q 047286 502 IVFEHTVALVGENGNGKSTVISLAERFHNPEQ---------VIYSWI-------------------I-IK---------- 542 (632)
Q Consensus 502 I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~~~~~~-------------------~-~~---------- 542 (632)
|.-++++||+||||||||||+++|.|+++|++ +..... + .+
T Consensus 30 i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~ 109 (266)
T 2yz2_A 30 INEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYP 109 (266)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTTCT
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhcCC
Confidence 33345899999999999999999999998753 110000 0 00
Q ss_pred -------HHHHHhcCCCccC--cccccCCCCCChHHHHHHHHHHHHhh--------------------------------
Q 047286 543 -------CTNFIASLPQGSD--LNVGERGLQLSGGLKQRIARTRARNY-------------------------------- 581 (632)
Q Consensus 543 -------~~~~i~~lp~g~d--t~vge~G~~LSgGQrQRiaiARA~~~-------------------------------- 581 (632)
+.+.+..+ |++ ........+||||||||++||||+..
T Consensus 110 ~~~~~~~~~~~l~~~--gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~ 187 (266)
T 2yz2_A 110 DRDPVPLVKKAMEFV--GLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL 187 (266)
T ss_dssp TSCSHHHHHHHHHHT--TCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHc--CcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHc
Confidence 11111111 333 33344556899999999999999654
Q ss_pred ----hccccchhhhhc-CCEEEEEeCCeEeeecChHHHhcc
Q 047286 582 ----CGCGSPPYHYKN-ADITSVVKNGVIAEKGRHDALMKI 617 (632)
Q Consensus 582 ----~~iahrl~~~~~-aD~I~vl~~G~ive~G~h~eL~~~ 617 (632)
+++||.++.+.. ||+|++|++|+|++.|+++++++.
T Consensus 188 g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 228 (266)
T 2yz2_A 188 GKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228 (266)
T ss_dssp TCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 688999999875 999999999999999999999865
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=99.74 E-value=1e-18 Score=174.03 Aligned_cols=114 Identities=22% Similarity=0.286 Sum_probs=85.1
Q ss_pred cEEEeeEEEEEecCCCChHHHHHhhhcCCChhh--------h---cHHHH----------------------H-------
Q 047286 501 DIVFEHTVALVGENGNGKSTVISLAERFHNPEQ--------V---IYSWI----------------------I------- 540 (632)
Q Consensus 501 ~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~--------~---~~~~~----------------------~------- 540 (632)
+|.-++++||+||||||||||+++|.|+++|+. + ..... +
T Consensus 22 ~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~ 101 (249)
T 2qi9_C 22 EVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDK 101 (249)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCSST
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCeEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhccC
Confidence 455556899999999999999999999987631 0 00000 0
Q ss_pred ---HHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh------------------------------------
Q 047286 541 ---IKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY------------------------------------ 581 (632)
Q Consensus 541 ---~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~------------------------------------ 581 (632)
..+.+.+..+ |++........+||||||||++||||+..
T Consensus 102 ~~~~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l 179 (249)
T 2qi9_C 102 TRTELLNDVAGAL--ALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSAL 179 (249)
T ss_dssp TCHHHHHHHHHHT--TCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHc--CChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 0011222222 44444555677899999999999999543
Q ss_pred -------hccccchhhh-hcCCEEEEEeCCeEeeecChHHHhc
Q 047286 582 -------CGCGSPPYHY-KNADITSVVKNGVIAEKGRHDALMK 616 (632)
Q Consensus 582 -------~~iahrl~~~-~~aD~I~vl~~G~ive~G~h~eL~~ 616 (632)
+++||.++.+ +.||+|++|++|++++.|+++++++
T Consensus 180 ~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 180 SQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp HHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred HhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 7889999988 6799999999999999999999986
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=7.4e-19 Score=194.66 Aligned_cols=141 Identities=11% Similarity=0.036 Sum_probs=91.8
Q ss_pred EEE-EeeCCCEEEEEcCCCchHHHHHHH--HHhCCC----------CCc----HHhhcceEEEcccCccccccccccccc
Q 047286 86 FLQ-HVPSGTTVALVGQSGSGKSTVINL--VESFRF----------YAP----EAEQEKIGLVSKEPIFLFCDFNEGQYI 148 (632)
Q Consensus 86 ~~~-~i~~Ge~~~ivG~sGsGKSTLl~l--l~~~~~----------~~~----~~~r~~i~~v~Q~~~~~~~~~~~~~~i 148 (632)
+++ .+++|++++|+||||||||||+++ +.|+.. .+. ...++.+||++|++... ..+... ..
T Consensus 31 i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~-~~l~~~-~~ 108 (525)
T 1tf7_A 31 ISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDE-GKLFIL-DA 108 (525)
T ss_dssp HTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHT-TSEEEE-EC
T ss_pred hcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhcc-CcEEEE-ec
Confidence 889 999999999999999999999998 444321 111 12346799999986521 111110 00
Q ss_pred ccCCCC----CCHHHHHHHHHHccchhhHhhCCcccccccc----c-----CCCCHHHHHHHHHHHHHHh-CCceEEEEe
Q 047286 149 PYGKQN----ASDEHIRPAVQLANAEKSIDKLPLGLDTVVA----T-----NAVDAQSERIVQAAMVKLV-TNQTVVIVA 214 (632)
Q Consensus 149 ~~~~~~----~~~~~~~~~~~~~~l~~~i~~l~~g~~~~v~----t-----s~LD~~~~~~i~~~l~~~~-~~~tviiit 214 (632)
..... ...-.+.+ .++.....++.|..+++. | +++|+..++.+.+.++.++ .+.|+|++|
T Consensus 109 -~~~~~~~~~l~~~~l~~-----~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~it 182 (525)
T 1tf7_A 109 -SPDPEGQEVVGGFDLSA-----LIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTT 182 (525)
T ss_dssp -CCCSSCCSCCSSHHHHH-----HHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred -CcccchhhhhcccCHHH-----HHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 00000 00011111 123345566666665553 2 3679999999999999885 488999999
Q ss_pred cCchHH---------hh-cCeEEEEeCCeE
Q 047286 215 NCLITI---------RN-ADCIIMVSKGKI 234 (632)
Q Consensus 215 H~~~~~---------~~-aD~i~vl~~G~i 234 (632)
|+++.+ +. ||+|++|++|++
T Consensus 183 H~~~~~~~~~~~~i~~~laD~vi~L~~~~~ 212 (525)
T 1tf7_A 183 ERIEEYGPIARYGVEEFVSDNVVILRNVLE 212 (525)
T ss_dssp ECSSSSSCSSTTSCHHHHCSEEEEEEEECS
T ss_pred cCCCCccccccccceeeeeeEEEEEEEEcc
Confidence 999873 55 999999999653
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.74 E-value=5.1e-18 Score=193.39 Aligned_cols=91 Identities=24% Similarity=0.286 Sum_probs=75.6
Q ss_pred HHHHHHHHccc-----hhhHhhCCccccccc--------------------ccCCCCHHHHHHHHHHHHHHh-CCceEEE
Q 047286 159 HIRPAVQLANA-----EKSIDKLPLGLDTVV--------------------ATNAVDAQSERIVQAAMVKLV-TNQTVVI 212 (632)
Q Consensus 159 ~~~~~~~~~~l-----~~~i~~l~~g~~~~v--------------------~ts~LD~~~~~~i~~~l~~~~-~~~tvii 212 (632)
+..+.+...++ ++...+||+|+++++ +|++||+.+++.+++.|+++. ++.|+|+
T Consensus 522 ~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~ 601 (670)
T 3ux8_A 522 RKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLV 601 (670)
T ss_dssp HHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 34455555554 345788999998766 399999999999999999985 4789999
Q ss_pred EecCchHHhhcCeEEEE------eCCeEEEecChhHHhcCCCc
Q 047286 213 VANCLITIRNADCIIMV------SKGKIVEKGTHDELIEDPEG 249 (632)
Q Consensus 213 itH~~~~~~~aD~i~vl------~~G~i~~~g~~~el~~~~~~ 249 (632)
|||+++.+..||+|++| ++|+|+++|+++++.+....
T Consensus 602 vtHd~~~~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~~~~~ 644 (670)
T 3ux8_A 602 IEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKES 644 (670)
T ss_dssp ECCCHHHHTTCSEEEEEESSSGGGCCEEEEEECHHHHHTCTTC
T ss_pred EeCCHHHHHhCCEEEEecCCcCCCCCEEEEecCHHHHHhCCcc
Confidence 99999988889999999 89999999999999765443
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.4e-18 Score=169.54 Aligned_cols=116 Identities=16% Similarity=0.129 Sum_probs=90.3
Q ss_pred ccccEEEeeEEEEEecCCCChHHHHHhhhcCCChhh---------hc-------HH--------------HHH-------
Q 047286 498 VRGDIVFEHTVALVGENGNGKSTVISLAERFHNPEQ---------VI-------YS--------------WII------- 540 (632)
Q Consensus 498 ~~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~~-------~~--------------~~~------- 540 (632)
++-+|. ++++||+||||||||||+++|.|++ |++ +. .. ..+
T Consensus 24 vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l~~tv~enl~~~~~~~ 101 (263)
T 2pjz_A 24 INLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELK 101 (263)
T ss_dssp EEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEECCGGGSCTTSBHHHHHHHHHHHT
T ss_pred eeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEEeCCCCccCCcHHHHHHHhhhhc
Confidence 344677 8899999999999999999999998 743 10 00 000
Q ss_pred ----HHHHHHHhcCCCccC-cccccCCCCCChHHHHHHHHHHHHhh---------------------------------h
Q 047286 541 ----IKCTNFIASLPQGSD-LNVGERGLQLSGGLKQRIARTRARNY---------------------------------C 582 (632)
Q Consensus 541 ----~~~~~~i~~lp~g~d-t~vge~G~~LSgGQrQRiaiARA~~~---------------------------------~ 582 (632)
..+.+.+..+ |++ ........+||||||||++||||+.. +
T Consensus 102 ~~~~~~~~~~l~~~--gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~tvi 179 (263)
T 2pjz_A 102 GLDRDLFLEMLKAL--KLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEGI 179 (263)
T ss_dssp CCCHHHHHHHHHHT--TCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCSEEE
T ss_pred chHHHHHHHHHHHc--CCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcCcEE
Confidence 0123344444 666 66777788999999999999999655 6
Q ss_pred ccccchhhh-hcCC-EEEEEeCCeEeeecChHHHhcc
Q 047286 583 GCGSPPYHY-KNAD-ITSVVKNGVIAEKGRHDALMKI 617 (632)
Q Consensus 583 ~iahrl~~~-~~aD-~I~vl~~G~ive~G~h~eL~~~ 617 (632)
++||.++.+ +.|| +|++|++|++++.|+++++.+.
T Consensus 180 ivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~~ 216 (263)
T 2pjz_A 180 LVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES 216 (263)
T ss_dssp EEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHTE
T ss_pred EEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHhh
Confidence 789999887 5799 9999999999999999999853
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.7e-18 Score=187.34 Aligned_cols=156 Identities=15% Similarity=0.157 Sum_probs=114.4
Q ss_pred EEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHH---hhcceEEEcccCccc-ccccccccccccCCC---CCCHHH
Q 047286 87 LQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEA---EQEKIGLVSKEPIFL-FCDFNEGQYIPYGKQ---NASDEH 159 (632)
Q Consensus 87 ~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~---~r~~i~~v~Q~~~~~-~~~~~~~~~i~~~~~---~~~~~~ 159 (632)
+++|++||+++|+||||||||||+++|.|+....... ....++|++|++... ..++.+ |+.+... ....+.
T Consensus 288 ~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~--~l~~~~~~~~~~~~~~ 365 (538)
T 3ozx_A 288 NGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQ--YLENASKDALSTSSWF 365 (538)
T ss_dssp CEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHH--HHHHHCSSTTCTTSHH
T ss_pred cceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHH--HHHHhhhhccchhHHH
Confidence 4568999999999999999999999999654332221 245799999986532 233333 3332111 122344
Q ss_pred HHHHHHHccch----hhHhhCCcccccccc-----------------cCCCCHHHHHHHHHHHHHHh--CCceEEEEecC
Q 047286 160 IRPAVQLANAE----KSIDKLPLGLDTVVA-----------------TNAVDAQSERIVQAAMVKLV--TNQTVVIVANC 216 (632)
Q Consensus 160 ~~~~~~~~~l~----~~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~~l~~~~--~~~tviiitH~ 216 (632)
+.++++..++. ..+.+||+|.+++++ |++||+.++..+++.|+++. .+.|+|+||||
T Consensus 366 ~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHd 445 (538)
T 3ozx_A 366 FEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHD 445 (538)
T ss_dssp HHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred HHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 56666666654 457889999998883 99999999999999999985 37899999999
Q ss_pred chHHhh-cCeEEEEeC--CeEEEecChhHHh
Q 047286 217 LITIRN-ADCIIMVSK--GKIVEKGTHDELI 244 (632)
Q Consensus 217 ~~~~~~-aD~i~vl~~--G~i~~~g~~~el~ 244 (632)
++.+.. ||||++|++ |.+...+++.++.
T Consensus 446 l~~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 446 LSIHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp HHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred HHHHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 998875 999999986 5566666665543
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-17 Score=169.27 Aligned_cols=111 Identities=18% Similarity=0.155 Sum_probs=80.5
Q ss_pred eeEEEEEecCCCChHHHHHhhhcCCChhh---------hc-----HHHHHH-----------------HHHHH-------
Q 047286 505 EHTVALVGENGNGKSTVISLAERFHNPEQ---------VI-----YSWIII-----------------KCTNF------- 546 (632)
Q Consensus 505 ~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~~-----~~~~~~-----------------~~~~~------- 546 (632)
++++||+||||||||||+++|.|+++|++ +. ...... .+.+.
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~ 126 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFK 126 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC--
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhh
Confidence 35899999999999999999999988743 11 000000 01111
Q ss_pred -------------------HhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh--------------------------
Q 047286 547 -------------------IASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY-------------------------- 581 (632)
Q Consensus 547 -------------------i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~-------------------------- 581 (632)
+..+ |++........+||||||||++||||++.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l 204 (279)
T 2ihy_A 127 SIGVYQDIDDEIRNEAHQLLKLV--GMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSIL 204 (279)
T ss_dssp -------CCHHHHHHHHHHHHHT--TCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHH
T ss_pred ccccccCCcHHHHHHHHHHHHHc--CChhHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHH
Confidence 1111 33333445567899999999999999543
Q ss_pred ---------h---ccccchhhh-hcCCEEEEEeCCeEeeecChHHHhcc
Q 047286 582 ---------C---GCGSPPYHY-KNADITSVVKNGVIAEKGRHDALMKI 617 (632)
Q Consensus 582 ---------~---~iahrl~~~-~~aD~I~vl~~G~ive~G~h~eL~~~ 617 (632)
+ ++||.+..+ +.||+|++|++|+|++.|+++++++.
T Consensus 205 ~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 253 (279)
T 2ihy_A 205 DSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILTS 253 (279)
T ss_dssp HHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHHHHCSH
T ss_pred HHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhcc
Confidence 2 469999987 56999999999999999999999864
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.70 E-value=6.7e-17 Score=186.50 Aligned_cols=90 Identities=24% Similarity=0.349 Sum_probs=76.6
Q ss_pred HHHHHHHHccch-----hhHhhCCccccccc--------------------ccCCCCHHHHHHHHHHHHHHh-CCceEEE
Q 047286 159 HIRPAVQLANAE-----KSIDKLPLGLDTVV--------------------ATNAVDAQSERIVQAAMVKLV-TNQTVVI 212 (632)
Q Consensus 159 ~~~~~~~~~~l~-----~~i~~l~~g~~~~v--------------------~ts~LD~~~~~~i~~~l~~~~-~~~tvii 212 (632)
+..++++.+++. +....||+|.++++ +|+|||+.+++.+++.|+++. ++.|+|+
T Consensus 784 ~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIv 863 (916)
T 3pih_A 784 RTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIV 863 (916)
T ss_dssp HHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 345566666653 34678999988776 399999999999999999985 5899999
Q ss_pred EecCchHHhhcCeEEEE------eCCeEEEecChhHHhcCCC
Q 047286 213 VANCLITIRNADCIIMV------SKGKIVEKGTHDELIEDPE 248 (632)
Q Consensus 213 itH~~~~~~~aD~i~vl------~~G~i~~~g~~~el~~~~~ 248 (632)
|||+++.++.||+|++| ++|+|+++|+++++.+.+.
T Consensus 864 I~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~~~ 905 (916)
T 3pih_A 864 IEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKNPH 905 (916)
T ss_dssp ECCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHSCTT
T ss_pred EeCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHhCCc
Confidence 99999999889999999 8999999999999988753
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.68 E-value=3e-17 Score=189.55 Aligned_cols=81 Identities=19% Similarity=0.287 Sum_probs=66.3
Q ss_pred HHHHHHHHHHccchh------hHhhCCccccccc-----------------ccCCCCHHHHHHHHHHHHHHhCCceEEEE
Q 047286 157 DEHIRPAVQLANAEK------SIDKLPLGLDTVV-----------------ATNAVDAQSERIVQAAMVKLVTNQTVVIV 213 (632)
Q Consensus 157 ~~~~~~~~~~~~l~~------~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l~~~~~~~tviii 213 (632)
.+++++.++..++.. .+..||+|+++++ +|++||+.+...+.+.|+++ +.|+|+|
T Consensus 877 ~~~i~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g~tVIiI 954 (986)
T 2iw3_A 877 RKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIII 954 (986)
T ss_dssp HHHHHHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC--SSEEEEE
T ss_pred HHHHHHHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh--CCEEEEE
Confidence 456778888888753 2568999999888 39999999999999988775 5799999
Q ss_pred ecCchHHhh-cCeEEEEeCCeEEEecC
Q 047286 214 ANCLITIRN-ADCIIMVSKGKIVEKGT 239 (632)
Q Consensus 214 tH~~~~~~~-aD~i~vl~~G~i~~~g~ 239 (632)
||+++.+.. ||++++|++|+++..|+
T Consensus 955 SHD~e~v~~l~DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 955 THSAEFTKNLTEEVWAVKDGRMTPSGH 981 (986)
T ss_dssp CSCHHHHTTTCCEEECCBTTBCCC---
T ss_pred ECCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 999998864 99999999999987764
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.60 E-value=1.6e-15 Score=173.76 Aligned_cols=89 Identities=25% Similarity=0.288 Sum_probs=74.8
Q ss_pred HHHHHHHccch-----hhHhhCCccccccc--------------------ccCCCCHHHHHHHHHHHHHHh-CCceEEEE
Q 047286 160 IRPAVQLANAE-----KSIDKLPLGLDTVV--------------------ATNAVDAQSERIVQAAMVKLV-TNQTVVIV 213 (632)
Q Consensus 160 ~~~~~~~~~l~-----~~i~~l~~g~~~~v--------------------~ts~LD~~~~~~i~~~l~~~~-~~~tviii 213 (632)
..++++..++. +.+..||+|.++++ +|+|||+.+.+.+++.|+++. ++.|+|+|
T Consensus 825 ~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvi 904 (972)
T 2r6f_A 825 KLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVI 904 (972)
T ss_dssp HHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 34566666654 35778999987766 389999999999999999985 58899999
Q ss_pred ecCchHHhhcCeEEEE------eCCeEEEecChhHHhcCCC
Q 047286 214 ANCLITIRNADCIIMV------SKGKIVEKGTHDELIEDPE 248 (632)
Q Consensus 214 tH~~~~~~~aD~i~vl------~~G~i~~~g~~~el~~~~~ 248 (632)
||+++.+..||+|++| ++|+|++.|+++++...+.
T Consensus 905 sHdl~~i~~aDrIivL~p~gG~~~G~Iv~~g~~~el~~~~~ 945 (972)
T 2r6f_A 905 EHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKE 945 (972)
T ss_dssp CCCHHHHTTCSEEEEECSSSTTSCCSEEEEESHHHHHTCTT
T ss_pred cCCHHHHHhCCEEEEEcCCCCCCCCEEEEecCHHHHHhCch
Confidence 9999998889999999 7999999999999987543
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=3e-15 Score=171.46 Aligned_cols=89 Identities=19% Similarity=0.311 Sum_probs=74.5
Q ss_pred HHHHHHHHccch-----hhHhhCCccccccc--------------------ccCCCCHHHHHHHHHHHHHHh-CCceEEE
Q 047286 159 HIRPAVQLANAE-----KSIDKLPLGLDTVV--------------------ATNAVDAQSERIVQAAMVKLV-TNQTVVI 212 (632)
Q Consensus 159 ~~~~~~~~~~l~-----~~i~~l~~g~~~~v--------------------~ts~LD~~~~~~i~~~l~~~~-~~~tvii 212 (632)
++.++++.+++. +.+..||+|.++++ +|++||+...+.+.+.|+++. ++.|+|+
T Consensus 709 ~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIv 788 (842)
T 2vf7_A 709 RALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIA 788 (842)
T ss_dssp HHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 345566666653 45678999987665 389999999999999999985 5889999
Q ss_pred EecCchHHhhcCeEEEE------eCCeEEEecChhHHhcCC
Q 047286 213 VANCLITIRNADCIIMV------SKGKIVEKGTHDELIEDP 247 (632)
Q Consensus 213 itH~~~~~~~aD~i~vl------~~G~i~~~g~~~el~~~~ 247 (632)
|||+++.+..||+|++| ++|+|++.|+++++...+
T Consensus 789 isHdl~~i~~aDrii~L~p~~g~~~G~Iv~~g~~~el~~~~ 829 (842)
T 2vf7_A 789 VEHKMQVVAASDWVLDIGPGAGEDGGRLVAQGTPAEVAQAA 829 (842)
T ss_dssp ECCCHHHHTTCSEEEEECSSSGGGCCSEEEEECHHHHTTCT
T ss_pred EcCCHHHHHhCCEEEEECCCCCCCCCEEEEEcCHHHHHhCc
Confidence 99999999779999999 799999999999998653
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.56 E-value=9.4e-16 Score=148.89 Aligned_cols=103 Identities=16% Similarity=0.103 Sum_probs=70.8
Q ss_pred cEEEeeEEEEEecCCCChHHHHHhhhcCCChhh---------h--------------------cHHHHH-----------
Q 047286 501 DIVFEHTVALVGENGNGKSTVISLAERFHNPEQ---------V--------------------IYSWII----------- 540 (632)
Q Consensus 501 ~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~--------------------~~~~~~----------- 540 (632)
+|+-++++||+||||||||||+++|.|+++|++ + .....+
T Consensus 31 ~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~ 110 (214)
T 1sgw_A 31 TIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKV 110 (214)
T ss_dssp EEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCC
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCch
Confidence 344445899999999999999999999988743 1 000000
Q ss_pred --HHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh------------------------------------h
Q 047286 541 --IKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY------------------------------------C 582 (632)
Q Consensus 541 --~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~------------------------------------~ 582 (632)
..+.+.+..+ |++.. .....+||||||||++||||+.. +
T Consensus 111 ~~~~~~~~l~~~--gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tii 187 (214)
T 1sgw_A 111 NKNEIMDALESV--EVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVI 187 (214)
T ss_dssp CHHHHHHHHHHT--TCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEE
T ss_pred HHHHHHHHHHHc--CCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 0122333333 56665 67778999999999999999554 6
Q ss_pred ccccchhhhhcCCEEEEEeCCeEe
Q 047286 583 GCGSPPYHYKNADITSVVKNGVIA 606 (632)
Q Consensus 583 ~iahrl~~~~~aD~I~vl~~G~iv 606 (632)
++||.+..+..++..+|+.+|+|-
T Consensus 188 ivtHd~~~~~~~~d~v~~~~~~~~ 211 (214)
T 1sgw_A 188 ISSREELSYCDVNENLHKYSTKID 211 (214)
T ss_dssp EEESSCCTTSSEEEEGGGGBC---
T ss_pred EEeCCHHHHHHhCCEEEEeCCccc
Confidence 789999998875555557777764
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.54 E-value=4.5e-16 Score=151.03 Aligned_cols=142 Identities=20% Similarity=0.227 Sum_probs=89.5
Q ss_pred EEeeCCCEEEEEcCCCchHHHHHHHHHhCCC----------CCc-HHhhcceEEEcccCcccccccccccccc-----cC
Q 047286 88 QHVPSGTTVALVGQSGSGKSTVINLVESFRF----------YAP-EAEQEKIGLVSKEPIFLFCDFNEGQYIP-----YG 151 (632)
Q Consensus 88 ~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~----------~~~-~~~r~~i~~v~Q~~~~~~~~~~~~~~i~-----~~ 151 (632)
.+|++|++++|+||||||||||+++|.|+.. ..+ ...++.++|++|++..|. .+...+++. ++
T Consensus 15 ~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~~~~~~~l~~~~~~~~ 93 (207)
T 1znw_A 15 QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQ-QLIDQGELLEWAEIHG 93 (207)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHH-HHHHTTCEEEEEEEGG
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHHHHH-HHHhcCCceeehhhcC
Confidence 5799999999999999999999999986531 011 123567999999986543 222111221 01
Q ss_pred --C-CCCCHHHHHHH----------HHHccchhhHhhCCccccccc----------ccCCC----CHHHHHHHHHHHHHH
Q 047286 152 --K-QNASDEHIRPA----------VQLANAEKSIDKLPLGLDTVV----------ATNAV----DAQSERIVQAAMVKL 204 (632)
Q Consensus 152 --~-~~~~~~~~~~~----------~~~~~l~~~i~~l~~g~~~~v----------~ts~L----D~~~~~~i~~~l~~~ 204 (632)
. .....+++++. ++..++.+....+|..+...+ .++++ |+..++.+++.++++
T Consensus 94 n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l 173 (207)
T 1znw_A 94 GLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIEL 173 (207)
T ss_dssp GTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEEEEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHH
T ss_pred chhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 0 01122333332 334455555666776554322 25665 788999999999888
Q ss_pred h--CCceEEEEecCchHHhh-cCeEEEEe
Q 047286 205 V--TNQTVVIVANCLITIRN-ADCIIMVS 230 (632)
Q Consensus 205 ~--~~~tviiitH~~~~~~~-aD~i~vl~ 230 (632)
. .+.|++++||+++.+.. ||+|++|.
T Consensus 174 ~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 174 AAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp HGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred hhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 5 36899999999998865 99999985
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.52 E-value=9.7e-17 Score=173.35 Aligned_cols=154 Identities=15% Similarity=0.072 Sum_probs=100.9
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcH--------HhhcceEEEcccCcccc--cccccccccccCCCC-
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPE--------AEQEKIGLVSKEPIFLF--CDFNEGQYIPYGKQN- 154 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~--------~~r~~i~~v~Q~~~~~~--~~~~~~~~i~~~~~~- 154 (632)
++|++++|++++|+||||||||||+|+|+|+...... ..++.++|+||++.+|. ..++..+|+ ++...
T Consensus 131 vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~ 209 (460)
T 2npi_A 131 IRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCISATPISDILDAQLPT-WGQSLT 209 (460)
T ss_dssp HHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCCEEEECCSCCCTTCTT-CSCBCB
T ss_pred CceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccchhhcccccccchhhhh-cccccc
Confidence 7788999999999999999999999999865311000 13567999999985432 112222244 33210
Q ss_pred ---CCHHHHHHHHHHccchhh--HhhCCccccccc------------------------ccCCCCHHHHHHHHHHHHHHh
Q 047286 155 ---ASDEHIRPAVQLANAEKS--IDKLPLGLDTVV------------------------ATNAVDAQSERIVQAAMVKLV 205 (632)
Q Consensus 155 ---~~~~~~~~~~~~~~l~~~--i~~l~~g~~~~v------------------------~ts~LD~~~~~~i~~~l~~~~ 205 (632)
...+++.++++..++.+. ..+|++|+.+++ +|++||+. .+.+.+.++++
T Consensus 210 ~~~~~~~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~- 287 (460)
T 2npi_A 210 SGATLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL- 287 (460)
T ss_dssp SSCCSSCCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT-
T ss_pred cCcchHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHh-
Confidence 011122223333333322 334555544322 48999999 66666666654
Q ss_pred CCceEEEEecCch------HHh-hcCe-----EEEEe-CCeEEEecChhHHh
Q 047286 206 TNQTVVIVANCLI------TIR-NADC-----IIMVS-KGKIVEKGTHDELI 244 (632)
Q Consensus 206 ~~~tviiitH~~~------~~~-~aD~-----i~vl~-~G~i~~~g~~~el~ 244 (632)
+.|+|+|+|+.. .+. .||+ |++|+ +|+++ .|+++++.
T Consensus 288 -~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~ 337 (460)
T 2npi_A 288 -NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKR 337 (460)
T ss_dssp -TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHH
T ss_pred -CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHh
Confidence 678999999877 444 5999 99999 99999 99998874
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.47 E-value=4.7e-14 Score=151.65 Aligned_cols=53 Identities=15% Similarity=0.211 Sum_probs=49.0
Q ss_pred cCCCCHHHHHHHHHHHHHHhCCceEEEEecCchHHhhcCeEEEE----eCCeEEEec
Q 047286 186 TNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRNADCIIMV----SKGKIVEKG 238 (632)
Q Consensus 186 ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~aD~i~vl----~~G~i~~~g 238 (632)
|++||+.+.+.+.+.|+++.++.|+|+|||+++.+..||++++| ++|+++...
T Consensus 325 t~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 325 DAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp TTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEEEEEETTEEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeEEEEEEeccCCceEEEE
Confidence 89999999999999999998789999999999888889999999 999987653
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.46 E-value=9.2e-16 Score=143.57 Aligned_cols=71 Identities=23% Similarity=0.261 Sum_probs=58.0
Q ss_pred EEEEEecCCCChHHHHHhhhcCCChh---h------------hc----HHHH---H---------------------H--
Q 047286 507 TVALVGENGNGKSTVISLAERFHNPE---Q------------VI----YSWI---I---------------------I-- 541 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y~~~---~------------~~----~~~~---~---------------------~-- 541 (632)
+++|||+||||||||+++|.|+|+|+ . +. ..+. + .
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i~~~~~~~~a 83 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFIRRVSEEEGN 83 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEEEECCHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEEecCChhhhh
Confidence 68999999999999999999998875 1 10 0111 0 1
Q ss_pred HHHHHHhc-CCCccCcccccCCCCCChHHHHHHHHHHHHhh
Q 047286 542 KCTNFIAS-LPQGSDLNVGERGLQLSGGLKQRIARTRARNY 581 (632)
Q Consensus 542 ~~~~~i~~-lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~ 581 (632)
++++|+.. +| ||||.|+|+ |||||||||+||||+++
T Consensus 84 ~l~~~i~~~l~-g~dt~i~Eg---lSgGq~qri~lARall~ 120 (171)
T 2f1r_A 84 DLDWIYERYLS-DYDLVITEG---FSKAGKDRIVVVKKPEE 120 (171)
T ss_dssp CHHHHHHHHTT-TCSEEEEES---CGGGCCCEEEECSSGGG
T ss_pred CHHHHHHhhCC-CCCEEEECC---cCCCCCcEEEEEecccC
Confidence 56689999 99 999999995 99999999999999875
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=6.9e-13 Score=139.65 Aligned_cols=66 Identities=14% Similarity=0.241 Sum_probs=56.3
Q ss_pred hhHhhCCccccccc-----------------------ccCCCCHHHHHHHHHHHHHHh-CCceEEEEecCchHHhhcCeE
Q 047286 171 KSIDKLPLGLDTVV-----------------------ATNAVDAQSERIVQAAMVKLV-TNQTVVIVANCLITIRNADCI 226 (632)
Q Consensus 171 ~~i~~l~~g~~~~v-----------------------~ts~LD~~~~~~i~~~l~~~~-~~~tviiitH~~~~~~~aD~i 226 (632)
..+..||+|+++++ +|++||+.+.+.+.+.|+++. .+.|+|+|||+++....||++
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~~ 354 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDRK 354 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSCE
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEE
Confidence 34557888887655 389999999999999999985 478999999999987789999
Q ss_pred EEEeCCeEEE
Q 047286 227 IMVSKGKIVE 236 (632)
Q Consensus 227 ~vl~~G~i~~ 236 (632)
++|++|++++
T Consensus 355 ~~l~~G~i~~ 364 (365)
T 3qf7_A 355 LRITGGVVVN 364 (365)
T ss_dssp EEEETTEEC-
T ss_pred EEEECCEEEe
Confidence 9999999975
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.4e-14 Score=155.61 Aligned_cols=151 Identities=15% Similarity=0.131 Sum_probs=101.8
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC-----------------------cHHhhcceEEEcccCccccccc
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA-----------------------PEAEQEKIGLVSKEPIFLFCDF 142 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~-----------------------~~~~r~~i~~v~Q~~~~~~~~~ 142 (632)
+ |++.+|++++|+||||||||||+++|.+....+ +..+++.++|++|++......+
T Consensus 151 v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~ 229 (438)
T 2dpy_A 151 L-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLLRM 229 (438)
T ss_dssp H-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECTTSCHHHHH
T ss_pred e-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccccccCceEEEEECCCCCHHHHH
Confidence 7 899999999999999999999999997542111 1124567899998532112222
Q ss_pred ccccccccCCCCCCHHHHHHHH--HHccchhhHhhCCcccccccc--------cCCCCHHHHHHHHHHHHHHhC-----C
Q 047286 143 NEGQYIPYGKQNASDEHIRPAV--QLANAEKSIDKLPLGLDTVVA--------TNAVDAQSERIVQAAMVKLVT-----N 207 (632)
Q Consensus 143 ~~~~~i~~~~~~~~~~~~~~~~--~~~~l~~~i~~l~~g~~~~v~--------ts~LD~~~~~~i~~~l~~~~~-----~ 207 (632)
+..+|+.+.. ++...- +...+-+.+.+++.|+ ++++ |+|||+.+...+.+.+.++.+ +
T Consensus 230 ~v~~~~~~~a------e~~~~~~~~v~~~ld~l~~lS~g~-qrvslAl~~p~~t~glD~~~~~~l~~ll~r~~~~~~~~G 302 (438)
T 2dpy_A 230 QGAAYATRIA------EDFRDRGQHVLLIMDSLTRYAMAQ-REIALAIGEPPATKGYPPSVFAKLPALVERAGNGIHGGG 302 (438)
T ss_dssp HHHHHHHHHH------HHHHTTTCEEEEEEECHHHHHHHH-HHHHHHTTCCCCSSSCCTTHHHHHHHHHTTCSCCSTTSC
T ss_pred HHHHHHHHHH------HHHHhCCCCHHHHHHhHHHHHHHH-HHHHHHhCCCcccccCCHHHHHHHHHHHHHHHhccCCCC
Confidence 2211222110 000000 0001112345555565 3332 899999999999999988754 4
Q ss_pred c-----eEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHhc
Q 047286 208 Q-----TVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIE 245 (632)
Q Consensus 208 ~-----tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~ 245 (632)
+ |++++|||++ ...||++++|.+|+|+.++++.++..
T Consensus 303 siT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl~~~~~~~~~ 344 (438)
T 2dpy_A 303 SITAFYTVLTEGDDQQ-DPIADSARAILDGHIVLSRRLAEAGH 344 (438)
T ss_dssp EEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEECHHHHHTTC
T ss_pred cccceeEEEEeCCCcc-chhhceEEEEeCcEEEEeCCHHHccC
Confidence 3 8999999999 66799999999999999999988764
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=2.3e-14 Score=134.47 Aligned_cols=126 Identities=15% Similarity=0.098 Sum_probs=73.0
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCC-CCcHHhhcceEEEcccCcccccccccccccccCCCCCCHHHHHHHH
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRF-YAPEAEQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAV 164 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~-~~~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 164 (632)
+||++++||+++|+||||||||||++++.+... ...+.+ .++++|++.... +.. ...+......
T Consensus 2 vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~---~g~~~~~~~~~~--~~~----------~~~~~~~~~~ 66 (171)
T 4gp7_A 2 MKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFC---RGLMSDDENDQT--VTG----------AAFDVLHYIV 66 (171)
T ss_dssp EEEEEESSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHH---HHHHCSSTTCGG--GHH----------HHHHHHHHHH
T ss_pred ccccCCCCEEEEEECCCCCCHHHHHHHHccCCeEEccHHH---HHHhcCcccchh--hHH----------HHHHHHHHHH
Confidence 799999999999999999999999997641110 011112 255666643110 000 0000000000
Q ss_pred ---HHccch---hhHhhCCccccccc-----------------ccCCCCHH----------------HHHHHHHHHHHHh
Q 047286 165 ---QLANAE---KSIDKLPLGLDTVV-----------------ATNAVDAQ----------------SERIVQAAMVKLV 205 (632)
Q Consensus 165 ---~~~~l~---~~i~~l~~g~~~~v-----------------~ts~LD~~----------------~~~~i~~~l~~~~ 205 (632)
...+.. +.....+.|.++++ +|++||+. ..+.+.+.++++.
T Consensus 67 ~~~~~~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~ 146 (171)
T 4gp7_A 67 SKRLQLGKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQ 146 (171)
T ss_dssp HHHHHTTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHH
T ss_pred HHHHhCCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHH
Confidence 011110 11111233333333 38999999 4477888877664
Q ss_pred -CCceEEEEecCchHHhhcCeE
Q 047286 206 -TNQTVVIVANCLITIRNADCI 226 (632)
Q Consensus 206 -~~~tviiitH~~~~~~~aD~i 226 (632)
+|.|+|++||+++.+..++++
T Consensus 147 ~~g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 147 REGFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp HHTCSEEEEECSHHHHHHEEEE
T ss_pred hcCCcEEEEeCCHHHhhhhhhc
Confidence 488999999999998877664
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.31 E-value=3.7e-13 Score=130.13 Aligned_cols=116 Identities=19% Similarity=0.174 Sum_probs=67.1
Q ss_pred eeCCCEEEEEcCCCchHHHHHHHHHhCCCCC------------cHHhhcceEEEcccCccccccccccccc-ccC-----
Q 047286 90 VPSGTTVALVGQSGSGKSTVINLVESFRFYA------------PEAEQEKIGLVSKEPIFLFCDFNEGQYI-PYG----- 151 (632)
Q Consensus 90 i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~------------~~~~r~~i~~v~Q~~~~~~~~~~~~~~i-~~~----- 151 (632)
+++|++++|+||||||||||+++|.|+ ..+ +...++.++|++|++. + |+ .+.
T Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~~-------e--nl~~~~~~~~~ 88 (208)
T 3b85_A 19 IDTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTLN-------E--KIDPYLRPLHD 88 (208)
T ss_dssp HHHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC---------------CTTTHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCHH-------H--HHHHHHHHHHH
Confidence 588999999999999999999999865 210 1123567999999861 1 22 111
Q ss_pred --CCCCCHHHHHHHHHHccchhhHhhCCcccccccc-----------------cCCCCHHHHHHHHHHHHHHhCCceEEE
Q 047286 152 --KQNASDEHIRPAVQLANAEKSIDKLPLGLDTVVA-----------------TNAVDAQSERIVQAAMVKLVTNQTVVI 212 (632)
Q Consensus 152 --~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~~l~~~~~~~tvii 212 (632)
......+++.++++. + .|++++++ |++ +++.+.+.|+++.++.|+|
T Consensus 89 ~~~~~~~~~~~~~~l~~-g---------lGq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l~~g~tii- 153 (208)
T 3b85_A 89 ALRDMVEPEVIPKLMEA-G---------IVEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRLGFGSKMV- 153 (208)
T ss_dssp HHTTTSCTTHHHHHHHT-T---------SEEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTBCTTCEEE-
T ss_pred HHHHhccHHHHHHHHHh-C---------CchHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHhcCCCEEE-
Confidence 000112334444443 2 28887773 677 7888899998874467888
Q ss_pred EecCchHHhhcCeEEEEeCCe
Q 047286 213 VANCLITIRNADCIIMVSKGK 233 (632)
Q Consensus 213 itH~~~~~~~aD~i~vl~~G~ 233 (632)
+||+++.+.. ....++|.
T Consensus 154 vtHd~~~~~~---~~~~~~G~ 171 (208)
T 3b85_A 154 VTGDITQVDL---PGGQKSGL 171 (208)
T ss_dssp EEEC---------------CC
T ss_pred EECCHHHHhC---cCCCCCcH
Confidence 9999876543 33345553
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=2.1e-13 Score=142.19 Aligned_cols=153 Identities=12% Similarity=0.126 Sum_probs=96.9
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHHhhcceEEEcccCcc---ccccccc---ccccccC--CCCCCH
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQEKIGLVSKEPIF---LFCDFNE---GQYIPYG--KQNASD 157 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~~r~~i~~v~Q~~~~---~~~~~~~---~~~i~~~--~~~~~~ 157 (632)
+ |+|.+|++++|+||||||||||+++|.+... +.. ..+.++.+++.- +...... ...+.+. ......
T Consensus 65 l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~--~~~--g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~~~~~~ 139 (347)
T 2obl_A 65 L-LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS--ADI--IVLALIGERGREVNEFLALLPQSTLSKCVLVVTTSDRPAL 139 (347)
T ss_dssp H-SCEETTCEEEEEECTTSSHHHHHHHHHHHSC--CSE--EEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECTTSCHH
T ss_pred e-eeecCCCEEEEECCCCCCHHHHHHHHhcCCC--CCE--EEEEEecccHHHHHHHHHhhhhhhhhceEEEEECCCCCHH
Confidence 6 8999999999999999999999999985532 211 122332222100 0000000 0001110 011112
Q ss_pred HHHHHHHHHccch--------------hhHhhCCcccccccc--------cCCCCHHHHHHHHHHHHHHh--C-Cc----
Q 047286 158 EHIRPAVQLANAE--------------KSIDKLPLGLDTVVA--------TNAVDAQSERIVQAAMVKLV--T-NQ---- 208 (632)
Q Consensus 158 ~~~~~~~~~~~l~--------------~~i~~l~~g~~~~v~--------ts~LD~~~~~~i~~~l~~~~--~-~~---- 208 (632)
+++......+.+. +.+.+++.|+ ++++ |+|+||.....+.+.++++. + |.
T Consensus 140 ~r~~~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~lal~~p~~t~Gldp~~~~~l~~ller~~~~~~GsiT~~ 218 (347)
T 2obl_A 140 ERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLASGEPDVRGGFPPSVFSSLPKLLERAGPAPKGSITAI 218 (347)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHHTTCCCCBTTBCHHHHHHHHHHHTTCEECSSSEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHHcCCCCcccCCCHHHHHHHHHHHHHHhCCCCCCeeeE
Confidence 3333222222111 3456667777 4443 79999999999999999885 3 56
Q ss_pred -eEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHhc
Q 047286 209 -TVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIE 245 (632)
Q Consensus 209 -tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~ 245 (632)
|++++||+++ ...||++++|.+|+|+.+++.+++..
T Consensus 219 ~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l~~~~~ 255 (347)
T 2obl_A 219 YTVLLESDNVN-DPIGDEVRSILDGHIVLTRELAEENH 255 (347)
T ss_dssp EEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHHHTTTC
T ss_pred EEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCHHHcCC
Confidence 8999999998 55699999999999999998888754
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.6e-13 Score=146.59 Aligned_cols=108 Identities=9% Similarity=-0.107 Sum_probs=73.1
Q ss_pred eEEEEEecCCCChHHHHHhhhcCCChhhh-c-HH---HHHH------------------HHHHHH--hcC---C------
Q 047286 506 HTVALVGENGNGKSTVISLAERFHNPEQV-I-YS---WIII------------------KCTNFI--ASL---P------ 551 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r~y~~~~~-~-~~---~~~~------------------~~~~~i--~~l---p------ 551 (632)
++++|+||||||||||+++|+|++.|++. . .. .... ...+.+ ... +
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~~l~~~~~~~tv~eni~~~~~~~~~~~~~~~ 218 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCISATPISDILDAQLPTWGQSLTSGATLLHNK 218 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCCEEEECCSCCCTTCTTCSCBCBSSCCSSCCB
T ss_pred CEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccchhhcccccccchhhhhcccccccCcchHHHH
Confidence 35699999999999999999999987654 2 00 0000 000000 000 0
Q ss_pred ------CccCcccccCCCCCChHHHHHHHHHHH--Hhh-------------------------------------hcccc
Q 047286 552 ------QGSDLNVGERGLQLSGGLKQRIARTRA--RNY-------------------------------------CGCGS 586 (632)
Q Consensus 552 ------~g~dt~vge~G~~LSgGQrQRiaiARA--~~~-------------------------------------~~iah 586 (632)
-|++... + ..+||||||||++|||| +.. ++++|
T Consensus 219 ~~ll~~~gl~~~~-~-~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~~~~l~~l~~~~~~tviiVth 296 (460)
T 2npi_A 219 QPMVKNFGLERIN-E-NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDENLAELHHIIEKLNVNIMLVLC 296 (460)
T ss_dssp CCEECCCCSSSGG-G-CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSSCHHHHHHHHHTTCCEEEEEC
T ss_pred HHHHHHhCCCccc-c-hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChhHHHHHHHHHHhCCCEEEEEc
Confidence 0111111 1 56899999999999999 432 67788
Q ss_pred chh------hh-hcCCE-----EEEEe-CCeEeeecChHHHhc
Q 047286 587 PPY------HY-KNADI-----TSVVK-NGVIAEKGRHDALMK 616 (632)
Q Consensus 587 rl~------~~-~~aD~-----I~vl~-~G~ive~G~h~eL~~ 616 (632)
... .+ +.||+ |++|+ +|+|+ .|+++++.+
T Consensus 297 ~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~~ 338 (460)
T 2npi_A 297 SETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKRS 338 (460)
T ss_dssp CSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHHH
T ss_pred cCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHhh
Confidence 766 33 56999 99999 99999 999999864
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.20 E-value=3.5e-13 Score=131.58 Aligned_cols=140 Identities=14% Similarity=0.087 Sum_probs=78.2
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCC--C---------Cc-HHhhcceEEEcccCcccccccccccccc---
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRF--Y---------AP-EAEQEKIGLVSKEPIFLFCDFNEGQYIP--- 149 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~--~---------~~-~~~r~~i~~v~Q~~~~~~~~~~~~~~i~--- 149 (632)
.+||++++|++++|+||||||||||+++|.++.. . .+ ...+..++|++|++..|........++.
T Consensus 15 ~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~pG~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~ 94 (218)
T 1z6g_A 15 VPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEFPNYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNEDFLEYDN 94 (218)
T ss_dssp -------CCCCEEEECSTTSSHHHHHHHHHHHSTTTEEECCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred CCceecCCCCEEEEECCCCCCHHHHHHHHHhhCCCcEEEeecccCCCCCcccccCCeEEECCHHHHHHhhhccchhhhhh
Confidence 3999999999999999999999999999986431 0 00 1134678999998865533211111111
Q ss_pred cCCC--CCCHHHHHHHHHHccchhhHhhCCccccccc----------------------ccCCCCHHHHHHHHHHHHHHh
Q 047286 150 YGKQ--NASDEHIRPAVQLANAEKSIDKLPLGLDTVV----------------------ATNAVDAQSERIVQAAMVKLV 205 (632)
Q Consensus 150 ~~~~--~~~~~~~~~~~~~~~l~~~i~~l~~g~~~~v----------------------~ts~LD~~~~~~i~~~l~~~~ 205 (632)
+... ....++++++++.....-.-..+++|.++++ .++++|..++..+.+.+.+..
T Consensus 95 ~~~~~~g~~~~~i~~~l~~~~~~il~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~ 174 (218)
T 1z6g_A 95 YANNFYGTLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLN 174 (218)
T ss_dssp ETTEEEEEEHHHHHHHHHTTCEEEEEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred cccccCCCcHHHHHHHHhCCCcEEEEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 1100 1124456666655432100012233322211 167889888889998888776
Q ss_pred CCceEEEEecCchHHhhcCeEEEEeC
Q 047286 206 TNQTVVIVANCLITIRNADCIIMVSK 231 (632)
Q Consensus 206 ~~~tviiitH~~~~~~~aD~i~vl~~ 231 (632)
++.| ++| ...+|+|+++++
T Consensus 175 ~~~~---~~h----~~~~d~iiv~~~ 193 (218)
T 1z6g_A 175 IELH---EAN----LLNFNLSIINDD 193 (218)
T ss_dssp HHHH---HHT----TSCCSEEEECSS
T ss_pred HHHH---hhc----ccCCCEEEECCC
Confidence 6655 566 456888877654
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=1.8e-11 Score=128.82 Aligned_cols=48 Identities=19% Similarity=0.099 Sum_probs=41.9
Q ss_pred cCCCCCChHHHHHHHHHHHHh------h------------------------------------hccccchhhhhcCCEE
Q 047286 560 ERGLQLSGGLKQRIARTRARN------Y------------------------------------CGCGSPPYHYKNADIT 597 (632)
Q Consensus 560 e~G~~LSgGQrQRiaiARA~~------~------------------------------------~~iahrl~~~~~aD~I 597 (632)
....+||||||||++||||+. . ++++|.+...+.||+|
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~~ 354 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDRK 354 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSCE
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEE
Confidence 345579999999999999976 2 7889999999999999
Q ss_pred EEEeCCeEee
Q 047286 598 SVVKNGVIAE 607 (632)
Q Consensus 598 ~vl~~G~ive 607 (632)
++|++|+|++
T Consensus 355 ~~l~~G~i~~ 364 (365)
T 3qf7_A 355 LRITGGVVVN 364 (365)
T ss_dssp EEEETTEEC-
T ss_pred EEEECCEEEe
Confidence 9999999986
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=1.2e-11 Score=115.84 Aligned_cols=78 Identities=18% Similarity=0.092 Sum_probs=46.1
Q ss_pred EEEeeEEEEEecCCCChHHHHHh------------hhcCCChhh--hcHHHH-HHHHH-HHHhcCCCccCcccccCCCCC
Q 047286 502 IVFEHTVALVGENGNGKSTVISL------------AERFHNPEQ--VIYSWI-IIKCT-NFIASLPQGSDLNVGERGLQL 565 (632)
Q Consensus 502 I~f~~~vaIVG~SGsGKSTL~~l------------l~r~y~~~~--~~~~~~-~~~~~-~~i~~lp~g~dt~vge~G~~L 565 (632)
+.-++.++|+||||||||||+++ +.++..++. ...... ...+. .....+..|+.+.+.. -...
T Consensus 6 i~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~ 84 (171)
T 4gp7_A 6 IPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMSDDENDQTVTGAAFDVLHYIVSKRLQLGKLTVVDA-TNVQ 84 (171)
T ss_dssp EESSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHCSSTTCGGGHHHHHHHHHHHHHHHHHTTCCEEEES-CCCS
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHhCCCeEEEEC-CCCC
Confidence 44456889999999999999994 444333222 111000 01111 1112234566655543 3456
Q ss_pred ChHHHHHHHHHHHHh
Q 047286 566 SGGLKQRIARTRARN 580 (632)
Q Consensus 566 SgGQrQRiaiARA~~ 580 (632)
|||||||++||||+.
T Consensus 85 s~g~~qrv~iAral~ 99 (171)
T 4gp7_A 85 ESARKPLIEMAKDYH 99 (171)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcC
Confidence 999999999999943
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.4e-11 Score=120.82 Aligned_cols=139 Identities=19% Similarity=0.221 Sum_probs=71.1
Q ss_pred eeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHHh----------------hcceEEEcccCcccccccccccccccCCC
Q 047286 90 VPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAE----------------QEKIGLVSKEPIFLFCDFNEGQYIPYGKQ 153 (632)
Q Consensus 90 i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~~----------------r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~ 153 (632)
+++|++++|+||||||||||+++|++....++... ..++++++|+..++..++.+ |+.+...
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~ 99 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLK--HIYVARA 99 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTSCHHHHHH--TEEEEEC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCHHHHhh--cEEEEec
Confidence 89999999999999999999999976323222111 12344444544333333322 4443322
Q ss_pred CCCHHHHHHHHHHccchhhHh-hC--Cccccccc---ccCCCCHH-------HH-----HHHHHHHHHHh--CCceEEEE
Q 047286 154 NASDEHIRPAVQLANAEKSID-KL--PLGLDTVV---ATNAVDAQ-------SE-----RIVQAAMVKLV--TNQTVVIV 213 (632)
Q Consensus 154 ~~~~~~~~~~~~~~~l~~~i~-~l--~~g~~~~v---~ts~LD~~-------~~-----~~i~~~l~~~~--~~~tviii 213 (632)
. ........++. +...+. .+ ..+.+..+ .++.+|+. .+ ..+.+.+.++. .+.|+|++
T Consensus 100 ~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~v 176 (231)
T 4a74_A 100 F-NSNHQMLLVQQ--AEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVT 176 (231)
T ss_dssp C-SHHHHHHHHHH--HHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred C-ChHHHHHHHHH--HHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 1 11111111111 111111 01 11111111 24555552 21 25666666653 37899999
Q ss_pred ecCch----HHhh-cCeEEEEeCCe
Q 047286 214 ANCLI----TIRN-ADCIIMVSKGK 233 (632)
Q Consensus 214 tH~~~----~~~~-aD~i~vl~~G~ 233 (632)
||... .+.. ||++++|++|+
T Consensus 177 tH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 177 NQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp EECC---------CCSEEEEEEECT
T ss_pred eecccCcchhhHhhceEEEEEEecC
Confidence 99554 4665 99999998753
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.14 E-value=2.9e-11 Score=129.80 Aligned_cols=45 Identities=16% Similarity=0.021 Sum_probs=40.2
Q ss_pred CChHHHHHHHHHHHHhh-------------------------------------hccccchhhhhcCCEEEEE----eCC
Q 047286 565 LSGGLKQRIARTRARNY-------------------------------------CGCGSPPYHYKNADITSVV----KNG 603 (632)
Q Consensus 565 LSgGQrQRiaiARA~~~-------------------------------------~~iahrl~~~~~aD~I~vl----~~G 603 (632)
||||||||++||||++. ++|||++..+..||+|++| ++|
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i~~l~k~~~~G 375 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQVEDG 375 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEEEEEETT
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeEEEEEEeccCC
Confidence 89999999999999543 6789999999999999999 999
Q ss_pred eEeeec
Q 047286 604 VIAEKG 609 (632)
Q Consensus 604 ~ive~G 609 (632)
+++...
T Consensus 376 ~~~~~~ 381 (415)
T 4aby_A 376 RTVSHV 381 (415)
T ss_dssp EEEEEE
T ss_pred ceEEEE
Confidence 998653
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.13 E-value=2.4e-11 Score=125.82 Aligned_cols=50 Identities=10% Similarity=0.224 Sum_probs=43.9
Q ss_pred cCCCCHHHHHHHHHHHHHHhCCceEEEEecCchHHhhcCeE--EEEeCCeEE
Q 047286 186 TNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRNADCI--IMVSKGKIV 235 (632)
Q Consensus 186 ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~aD~i--~vl~~G~i~ 235 (632)
|++||+..++.+.+.|+++.++.|+|++||+.+....||++ ++|++|...
T Consensus 251 ~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s~ 302 (322)
T 1e69_A 251 DSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNGVSA 302 (322)
T ss_dssp CSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSSCEE
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceEEEEEEeCCEEE
Confidence 89999999999999999987678999999998777789987 888888653
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.12 E-value=1.6e-12 Score=122.50 Aligned_cols=72 Identities=18% Similarity=0.108 Sum_probs=42.9
Q ss_pred EEEEEecCCCChHHHHHhhhcCCChh-------hhcHHHHHHHH----------HHHHhcCCCccCcccccCCCCCChHH
Q 047286 507 TVALVGENGNGKSTVISLAERFHNPE-------QVIYSWIIIKC----------TNFIASLPQGSDLNVGERGLQLSGGL 569 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y~~~-------~~~~~~~~~~~----------~~~i~~lp~g~dt~vge~G~~LSgGQ 569 (632)
+++|+||+|||||||+++|.+++... +.......... ..++..+....+..++..+.+|||||
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSgG~ 81 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFE 81 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecCcHHHHHHHhhcCCccccccccccCcCHHH
Confidence 57999999999999999999986421 00000000000 00000000000124566677899999
Q ss_pred HHHHHHHHH
Q 047286 570 KQRIARTRA 578 (632)
Q Consensus 570 rQRiaiARA 578 (632)
|||++||||
T Consensus 82 ~qr~~la~a 90 (178)
T 1ye8_A 82 ELAIPILER 90 (178)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999999996
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=6.4e-12 Score=133.30 Aligned_cols=135 Identities=14% Similarity=0.073 Sum_probs=85.8
Q ss_pred EEEEeeCCC--------------------EEEEEcCCCchHHHHHHHHHhCCCCCc-------HHhhcceEEEcccCccc
Q 047286 86 FLQHVPSGT--------------------TVALVGQSGSGKSTVINLVESFRFYAP-------EAEQEKIGLVSKEPIFL 138 (632)
Q Consensus 86 ~~~~i~~Ge--------------------~~~ivG~sGsGKSTLl~ll~~~~~~~~-------~~~r~~i~~v~Q~~~~~ 138 (632)
+++++++|+ +++|+||||||||||+|+|.|+...+. .... +.++++|++...
T Consensus 42 is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t-~~~~v~q~~~~~ 120 (413)
T 1tq4_A 42 IELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-MERHPYKHPNIP 120 (413)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----CCCEEEECSSCT
T ss_pred ccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-eeEEeccccccC
Confidence 777888888 999999999999999999986532211 1111 237899986422
Q ss_pred ccccccccccccCCCCCCHHHHHHHHHHccchhh--HhhCCcc--ccccc---------------------------ccC
Q 047286 139 FCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKS--IDKLPLG--LDTVV---------------------------ATN 187 (632)
Q Consensus 139 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~--i~~l~~g--~~~~v---------------------------~ts 187 (632)
..++.+ +..++... .++.+.++..++.+. ...++.| .++++ +|+
T Consensus 121 ~ltv~D--~~g~~~~~---~~~~~~L~~~~L~~~~~~~~lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPts 195 (413)
T 1tq4_A 121 NVVFWD--LPGIGSTN---FPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADG 195 (413)
T ss_dssp TEEEEE--CCCGGGSS---CCHHHHHHHTTGGGCSEEEEEESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTT
T ss_pred CeeehH--hhcccchH---HHHHHHHHHcCCCccCCeEEeCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccc
Confidence 233333 45554322 234556666555431 1126666 44333 389
Q ss_pred CCCHHHHHHHHHHHHHHh------C----CceEEEEecCchH--Hhh-cCeE
Q 047286 188 AVDAQSERIVQAAMVKLV------T----NQTVVIVANCLIT--IRN-ADCI 226 (632)
Q Consensus 188 ~LD~~~~~~i~~~l~~~~------~----~~tviiitH~~~~--~~~-aD~i 226 (632)
+||+.+++.+++.|+++. . ..++++++|.++. ++. ||+|
T Consensus 196 gLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 196 EPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 999999999998888763 1 2467778898765 544 7776
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=1.8e-11 Score=119.22 Aligned_cols=130 Identities=18% Similarity=0.215 Sum_probs=80.5
Q ss_pred EeeCCCEEEEEcCCCchHHHHHHHHHhCCCC------------CcH-HhhcceEEEcccCccccccccc---ccccccCC
Q 047286 89 HVPSGTTVALVGQSGSGKSTVINLVESFRFY------------APE-AEQEKIGLVSKEPIFLFCDFNE---GQYIPYGK 152 (632)
Q Consensus 89 ~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~------------~~~-~~r~~i~~v~Q~~~~~~~~~~~---~~~i~~~~ 152 (632)
+.++|++++|+||||||||||+++|.+.... ++. ..+..++|++|++..|...... .+++.+..
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~ 91 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFG 91 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETT
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHHh
Confidence 5789999999999999999999999764321 010 1234689999988655432210 12333221
Q ss_pred C--CCCHHHHHHHHHHccchhhHhhCCcccccccccCCCCHHHHHHHHHHHHHHhCCceEEEEecCchHHhhcCeEEEEe
Q 047286 153 Q--NASDEHIRPAVQLANAEKSIDKLPLGLDTVVATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRNADCIIMVS 230 (632)
Q Consensus 153 ~--~~~~~~~~~~~~~~~l~~~i~~l~~g~~~~v~ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~aD~i~vl~ 230 (632)
. ....+++.++++. |.. .+.. ||+.+.+.+.+.+. ++.|++++||+++.++. |+ ++
T Consensus 92 ~~yg~~~~~v~~~l~~------------G~i-llLD--LD~~~~~~i~~~l~---~~~tI~i~th~~~~l~~--Rl--~~ 149 (219)
T 1s96_A 92 NYYGTSREAIEQVLAT------------GVD-VFLD--IDWQGAQQIRQKMP---HARSIFILPPSKIELDR--RL--RG 149 (219)
T ss_dssp EEEEEEHHHHHHHHTT------------TCE-EEEE--CCHHHHHHHHHHCT---TCEEEEEECSSHHHHHH--HH--HT
T ss_pred ccCCCCHHHHHHHHhc------------CCe-EEEE--ECHHHHHHHHHHcc---CCEEEEEECCCHHHHHH--HH--HH
Confidence 1 1123344444332 311 1222 99999999988765 57899999999988765 33 66
Q ss_pred CCeEEEecChhHHh
Q 047286 231 KGKIVEKGTHDELI 244 (632)
Q Consensus 231 ~G~i~~~g~~~el~ 244 (632)
+| .++++++.
T Consensus 150 rG----~~~~e~i~ 159 (219)
T 1s96_A 150 RG----QDSEEVIA 159 (219)
T ss_dssp TS----CSCHHHHH
T ss_pred cC----CCCHHHHH
Confidence 67 56676664
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.05 E-value=3.2e-10 Score=114.06 Aligned_cols=121 Identities=19% Similarity=0.162 Sum_probs=74.1
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCC------------cHHhhcceEEEcccCcccccccccccccccCCCC---CCHHH
Q 047286 95 TVALVGQSGSGKSTVINLVESFRFYA------------PEAEQEKIGLVSKEPIFLFCDFNEGQYIPYGKQN---ASDEH 159 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~~~~~~------------~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~---~~~~~ 159 (632)
.++|+||||||||||+|+|.|..... ....++.++|++|++.++. .++..+|+.++... ...+.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~-~ltv~d~~~~g~~~~~~~~~~~ 82 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKM-KLTVIDTPGFGDQINNENCWEP 82 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CC-EEEEECCCC--CCSBCTTCSHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcC-CceEEechhhhhhcccHHHHHH
Confidence 48999999999999999997653221 1123467999999986543 33333366665432 22344
Q ss_pred HHHHHHHccchhhHhhCCcccccccc--------------cCCCCHHHHHHHHHHHHHHhCCceEEEEecCchHH
Q 047286 160 IRPAVQLANAEKSIDKLPLGLDTVVA--------------TNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITI 220 (632)
Q Consensus 160 ~~~~~~~~~l~~~i~~l~~g~~~~v~--------------ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~ 220 (632)
+.+.+..-..+....++++|.+++++ +.+||+.. .+.++.+.+..++|++.|..+.+
T Consensus 83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD----~~~l~~L~~~~~vI~Vi~K~D~l 153 (270)
T 3sop_A 83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD----LEFMKHLSKVVNIIPVIAKADTM 153 (270)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH----HHHHHHHHTTSEEEEEETTGGGS
T ss_pred HHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH----HHHHHHHHhcCcEEEEEeccccC
Confidence 55555533344567889999988763 68899876 33444444447888888876544
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.03 E-value=2.4e-10 Score=118.28 Aligned_cols=67 Identities=18% Similarity=0.160 Sum_probs=43.3
Q ss_pred CCCccCccccc------CCCCCChHHHHHHHHHHHHh----h-----------------------------------hcc
Q 047286 550 LPQGSDLNVGE------RGLQLSGGLKQRIARTRARN----Y-----------------------------------CGC 584 (632)
Q Consensus 550 lp~g~dt~vge------~G~~LSgGQrQRiaiARA~~----~-----------------------------------~~i 584 (632)
++.|+++.++. ...+||||||||++||||+. . +++
T Consensus 199 l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~ 278 (322)
T 1e69_A 199 LDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVI 278 (322)
T ss_dssp -----CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEE
T ss_pred ccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 45577665442 34689999999999999863 2 678
Q ss_pred ccchhhhhcCCEE--EEEeCCeE-eeecChHHHhc
Q 047286 585 GSPPYHYKNADIT--SVVKNGVI-AEKGRHDALMK 616 (632)
Q Consensus 585 ahrl~~~~~aD~I--~vl~~G~i-ve~G~h~eL~~ 616 (632)
||++..++.||++ ++|++|+. +...+-++..+
T Consensus 279 tH~~~~~~~~d~~~~v~~~~g~s~~~~~~~~~~~~ 313 (322)
T 1e69_A 279 THNKIVMEAADLLHGVTMVNGVSAIVPVEVEKILE 313 (322)
T ss_dssp CCCTTGGGGCSEEEEEEESSSCEEEEECCC-----
T ss_pred ECCHHHHhhCceEEEEEEeCCEEEEEEEEcchhhh
Confidence 9999888999987 88887754 33444454433
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.01 E-value=1.9e-12 Score=136.60 Aligned_cols=154 Identities=14% Similarity=0.129 Sum_probs=92.2
Q ss_pred EEEEeeC--CCEEEEEcCCCchHHHHHHHHHhCCCCCc----------------------HHhhcceEEEcccCcccccc
Q 047286 86 FLQHVPS--GTTVALVGQSGSGKSTVINLVESFRFYAP----------------------EAEQEKIGLVSKEPIFLFCD 141 (632)
Q Consensus 86 ~~~~i~~--Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~----------------------~~~r~~i~~v~Q~~~~~~~~ 141 (632)
++++|++ |+.++|+||||||||||+++|.++..... ..+ ..|++++|++..+..+
T Consensus 161 v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~q~~~~~~~t 239 (365)
T 1lw7_A 161 IPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGHQRYIDYAVR 239 (365)
T ss_dssp SCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcccCChhHH-HHHHHHHHHHHHHHHh
Confidence 7888999 99999999999999999999985422111 111 3367777776555555
Q ss_pred cccccccccCCCCCCHHHHHHHHHHccchhhHhhCCcc--ccccc------------ccCCCCHHHHHHHHHHHHHHhC-
Q 047286 142 FNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLG--LDTVV------------ATNAVDAQSERIVQAAMVKLVT- 206 (632)
Q Consensus 142 ~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g--~~~~v------------~ts~LD~~~~~~i~~~l~~~~~- 206 (632)
..+ |+.++.....................+..++.+ .+..+ .+.++|+..+..+.+.++++.+
T Consensus 240 ~~~--nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~ 317 (365)
T 1lw7_A 240 HSH--KIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDK 317 (365)
T ss_dssp HCS--SEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHG
T ss_pred ccC--CEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHH
Confidence 554 566654322223333332222333334443322 22211 1367899999999999988754
Q ss_pred -CceEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHh
Q 047286 207 -NQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELI 244 (632)
Q Consensus 207 -~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~ 244 (632)
+.++++++|.-...+.+|++.++++ ++..++.++|.
T Consensus 318 ~~~~ililde~~~~~r~~~~i~~i~~--~l~~~~~~~~~ 354 (365)
T 1lw7_A 318 YKVPYIEIESPSYLDRYNQVKAVIEK--VLNEEEISELQ 354 (365)
T ss_dssp GGCCCEEEECSSHHHHHHHHHHHHHH--HTSCCCCSSCC
T ss_pred cCCCEEEeCCCCHHHHHHHHHHHHHH--HhcccchhHhh
Confidence 7899999986544455777776654 44556666654
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=2.7e-10 Score=132.23 Aligned_cols=144 Identities=12% Similarity=0.035 Sum_probs=84.0
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHHhhcce-EEEcccCcccc------cccccccccccCCCCCCHH
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQEKI-GLVSKEPIFLF------CDFNEGQYIPYGKQNASDE 158 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~~r~~i-~~v~Q~~~~~~------~~~~~~~~i~~~~~~~~~~ 158 (632)
++|++++|++++|+|||||||||++|++..... ..++ .++|++...+. ..+...+++..+.... ..
T Consensus 655 isl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~------~aq~G~~vpa~~~~~~~~d~i~~~ig~~d~l~~~lStf-~~ 727 (934)
T 3thx_A 655 VYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVL------MAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTF-MA 727 (934)
T ss_dssp EEEETTTBCEEEEECCTTSSHHHHHHHHHHHHH------HHHHTCCBSEEEEEEECCSEEEEECC---------CHH-HH
T ss_pred ceeecCCCeEEEEECCCCCCHHHHHHHHHHHHH------HHhcCCccccccccchHHHHHHHhcCchhhHHHhHhhh-HH
Confidence 899999999999999999999999998832110 0111 23333321100 0000000111110000 01
Q ss_pred HHHHHHHHccchhhHhhCCccccccc---ccCCCCHHHHHHH-HHHHHHHh--CCceEEEEecCchHHhhcCeEEEEeCC
Q 047286 159 HIRPAVQLANAEKSIDKLPLGLDTVV---ATNAVDAQSERIV-QAAMVKLV--TNQTVVIVANCLITIRNADCIIMVSKG 232 (632)
Q Consensus 159 ~~~~~~~~~~l~~~i~~l~~g~~~~v---~ts~LD~~~~~~i-~~~l~~~~--~~~tviiitH~~~~~~~aD~i~vl~~G 232 (632)
+..+.... +.... .-+-.+ +++|+|+.....+ +..++.+. .+.|+|++||+.+....||++..+++|
T Consensus 728 e~~~~a~i------l~~a~-~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng 800 (934)
T 3thx_A 728 EMLETASI------LRSAT-KDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNL 800 (934)
T ss_dssp HHHHHHHH------HHHCC-TTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEE
T ss_pred HHHHHHHH------HHhcc-CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEee
Confidence 11111111 11110 111111 4899999988777 55666664 378999999998888889999999999
Q ss_pred eEEEecChhHH
Q 047286 233 KIVEKGTHDEL 243 (632)
Q Consensus 233 ~i~~~g~~~el 243 (632)
++...++.+++
T Consensus 801 ~v~~~~~~~~l 811 (934)
T 3thx_A 801 HVTALTTEETL 811 (934)
T ss_dssp EEEEEEETTEE
T ss_pred EEEEEecCCcE
Confidence 99988877765
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=98.97 E-value=3.2e-11 Score=125.05 Aligned_cols=92 Identities=16% Similarity=0.078 Sum_probs=63.1
Q ss_pred eEEEEEecCCCChHHHHHhhhcCCChhhhcHHHHHHHHHHHHhcCCCccCcccc-cCCCCCChHHHHHHHHHHHHhh---
Q 047286 506 HTVALVGENGNGKSTVISLAERFHNPEQVIYSWIIIKCTNFIASLPQGSDLNVG-ERGLQLSGGLKQRIARTRARNY--- 581 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r~y~~~~~~~~~~~~~~~~~i~~lp~g~dt~vg-e~G~~LSgGQrQRiaiARA~~~--- 581 (632)
+.++|+||||||||||+++|.|+++|++-... +.+..+ ..+|. +...++ -.| |||+||++||||+..
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~--i~~~~e--~~~~~-~~~~i~~~~g----gg~~~r~~la~aL~~~p~ 242 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIIS--IEDTEE--IVFKH-HKNYTQLFFG----GNITSADCLKSCLRMRPD 242 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEE--EESSCC--CCCSS-CSSEEEEECB----TTBCHHHHHHHHTTSCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEE--ECCeec--ccccc-chhEEEEEeC----CChhHHHHHHHHhhhCCC
Confidence 36799999999999999999999998651110 000000 01110 111111 001 899999999999543
Q ss_pred --------------------------hccccchhhhhcCCEEEEEeCCeEe
Q 047286 582 --------------------------CGCGSPPYHYKNADITSVVKNGVIA 606 (632)
Q Consensus 582 --------------------------~~iahrl~~~~~aD~I~vl~~G~iv 606 (632)
++++|++++.+.||||++|++|+..
T Consensus 243 ilildE~~~~e~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~~~ 293 (330)
T 2pt7_A 243 RIILGELRSSEAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSNSA 293 (330)
T ss_dssp EEEECCCCSTHHHHHHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHTSGG
T ss_pred EEEEcCCChHHHHHHHHHHhcCCCEEEEEEcccHHHHHhhhheehhcCCcc
Confidence 6779999999999999999988643
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=98.97 E-value=5.5e-10 Score=131.34 Aligned_cols=146 Identities=14% Similarity=0.138 Sum_probs=82.5
Q ss_pred EEEEeeC-------CCEEEEEcCCCchHHHHHHHHHhCCCCCcHHhhcceE-EEcccCcccccccccccccccCCCCCCH
Q 047286 86 FLQHVPS-------GTTVALVGQSGSGKSTVINLVESFRFYAPEAEQEKIG-LVSKEPIFLFCDFNEGQYIPYGKQNASD 157 (632)
Q Consensus 86 ~~~~i~~-------Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~~r~~i~-~v~Q~~~~~~~~~~~~~~i~~~~~~~~~ 157 (632)
++|++++ |++++|+||||||||||+|++ |+.. ...++| ||||++. ..++.++..-.++..+...
T Consensus 775 i~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~-----~~aqiG~~Vpq~~~--~l~v~d~I~~rig~~d~~~ 846 (1022)
T 2o8b_B 775 ILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA-----VMAQMGCYVPAEVC--RLTPIDRVFTRLGASDRIM 846 (1022)
T ss_dssp EEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH-----HHHTTTCCEESSEE--EECCCSBEEEECC------
T ss_pred eeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH-----HHhheeEEeccCcC--CCCHHHHHHHHcCCHHHHh
Confidence 7888877 899999999999999999998 5421 345677 9999863 2223321111122111000
Q ss_pred HHHHH-HHHHccchhhHhhCCccccccc---ccCCCCHHHH-HHHHHHHHHHh-C-CceEEEEecCchHHhh-cCeEEEE
Q 047286 158 EHIRP-AVQLANAEKSIDKLPLGLDTVV---ATNAVDAQSE-RIVQAAMVKLV-T-NQTVVIVANCLITIRN-ADCIIMV 229 (632)
Q Consensus 158 ~~~~~-~~~~~~l~~~i~~l~~g~~~~v---~ts~LD~~~~-~~i~~~l~~~~-~-~~tviiitH~~~~~~~-aD~i~vl 229 (632)
..... ..+..++ ..+..+...-+-.+ +++|+|+... ..+++.++.+. + +.++|++||+.+.+.. +|++.++
T Consensus 847 ~~~stf~~em~~~-a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~ 925 (1022)
T 2o8b_B 847 SGESTFFVELSET-ASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR 925 (1022)
T ss_dssp ---CHHHHHHHHH-HHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE
T ss_pred hchhhhHHHHHHH-HHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee
Confidence 00000 0000000 00111111111111 3899999874 55778888775 3 7899999999998875 9998886
Q ss_pred eCCeEE--EecChh
Q 047286 230 SKGKIV--EKGTHD 241 (632)
Q Consensus 230 ~~G~i~--~~g~~~ 241 (632)
+|++. ++|+.+
T Consensus 926 -~g~~~~~~~~~~~ 938 (1022)
T 2o8b_B 926 -LGHMACMVENECE 938 (1022)
T ss_dssp -EEEEEEC------
T ss_pred -cCeEEEEEecCcc
Confidence 58887 445443
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=98.95 E-value=2.5e-10 Score=107.42 Aligned_cols=130 Identities=14% Similarity=0.167 Sum_probs=67.9
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCC-----CC---cH--HhhcceEEEcccCccccccccccc--cccc------CCC--C
Q 047286 95 TVALVGQSGSGKSTVINLVESFRF-----YA---PE--AEQEKIGLVSKEPIFLFCDFNEGQ--YIPY------GKQ--N 154 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~~~~-----~~---~~--~~r~~i~~v~Q~~~~~~~~~~~~~--~i~~------~~~--~ 154 (632)
.++|+||||||||||+++|.+... +. .. ..+++++|++|++. ..++. ...+ +.. .
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 76 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTE-----GKKKIFSSKFFTSKKLVGSYGVN 76 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETT-----CCEEEEEETTCCCSSEETTEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecCc-----HHHHHHHhhcCCccccccccccC
Confidence 689999999999999999975421 00 11 34567899999762 11100 0000 000 0
Q ss_pred CC-HHHHH-HHHHHccchhhHhhCCcc--cccccccCCCCHHHHHHHHHHHHHHhCCceEEEEec---CchHHhh-cCeE
Q 047286 155 AS-DEHIR-PAVQLANAEKSIDKLPLG--LDTVVATNAVDAQSERIVQAAMVKLVTNQTVVIVAN---CLITIRN-ADCI 226 (632)
Q Consensus 155 ~~-~~~~~-~~~~~~~l~~~i~~l~~g--~~~~v~ts~LD~~~~~~i~~~l~~~~~~~tviiitH---~~~~~~~-aD~i 226 (632)
.+ .++.+ ..+..+. .+.+..-|.= +|-.-+|++||+...+.+.+.+.+ .+.|+|+++| +...+.. ||+
T Consensus 77 lSgG~~qr~~la~aa~-~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~--~~~~~i~~~H~~h~~~~~~~i~~r- 152 (178)
T 1ye8_A 77 VQYFEELAIPILERAY-REAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD--PNVNVVATIPIRDVHPLVKEIRRL- 152 (178)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC--TTSEEEEECCSSCCSHHHHHHHTC-
T ss_pred cCHHHHHHHHHHhhcc-ccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc--CCCeEEEEEccCCCchHHHHHHhc-
Confidence 01 11111 1111100 0001111110 122115899999999999888866 3567888885 6666654 787
Q ss_pred EEEeCCeEEE
Q 047286 227 IMVSKGKIVE 236 (632)
Q Consensus 227 ~vl~~G~i~~ 236 (632)
.+|++++
T Consensus 153 ---~~~~i~~ 159 (178)
T 1ye8_A 153 ---PGAVLIE 159 (178)
T ss_dssp ---TTCEEEE
T ss_pred ---CCcEEEE
Confidence 5566665
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.93 E-value=8.6e-11 Score=114.57 Aligned_cols=30 Identities=23% Similarity=0.273 Sum_probs=24.2
Q ss_pred ccEEEeeEEEEEecCCCChHHHHHhhhcCC
Q 047286 500 GDIVFEHTVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 500 g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
-+|.-++++|||||||||||||+++|.|++
T Consensus 18 l~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 18 GSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ----CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred eecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 345556688999999999999999999998
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=2.3e-10 Score=113.58 Aligned_cols=145 Identities=10% Similarity=0.163 Sum_probs=76.1
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhC-CCCCcHHhhcceEEEcccCccccccccccccccc-------CCC-CC
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESF-RFYAPEAEQEKIGLVSKEPIFLFCDFNEGQYIPY-------GKQ-NA 155 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~-~~~~~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~-------~~~-~~ 155 (632)
.+||++++|+++||+||||||||||+++|.+. +.......++.++|++|++ ++..++..+++.+ ..+ ..
T Consensus 17 ~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~--~~~~l~~~~~~~~~~~~~~~~~~~~~ 94 (245)
T 2jeo_A 17 NLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDR--FYKVLTAEQKAKALKGQYNFDHPDAF 94 (245)
T ss_dssp ------CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGG--GBCCCCHHHHHHHHTTCCCTTSGGGB
T ss_pred ceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCc--CccccCHhHhhhhhccCCCCCCcccc
Confidence 38999999999999999999999999999753 2110013467899999996 2323332222211 111 12
Q ss_pred CHHHHHHHHHHc--cchhhHhhCCcccccccc------------cCCCCHHHHHHHHHHHHHHhCCceEEEEecCchHH-
Q 047286 156 SDEHIRPAVQLA--NAEKSIDKLPLGLDTVVA------------TNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITI- 220 (632)
Q Consensus 156 ~~~~~~~~~~~~--~l~~~i~~l~~g~~~~v~------------ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~- 220 (632)
+.+++.+.++.. .....+..++.|..+++. .-++|+..+..+. ++ .+.+++++||+...+
T Consensus 95 ~~~~~~~~L~~l~~~~~~~~~~ls~g~~~r~~~~~~~~~~~~lilDg~~~~~~~~l~----~~-~~~~i~v~th~~~~~~ 169 (245)
T 2jeo_A 95 DNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPETTVVYPADVVLFEGILVFYSQEIR----DM-FHLRLFVDTDSDVRLS 169 (245)
T ss_dssp CHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEECTTTTTSHHHH----TT-CSEEEEEECCHHHHHH
T ss_pred cHHHHHHHHHHHHCCCCeecccccccccCccCceEEecCCCEEEEeCccccccHHHH----Hh-cCeEEEEECCHHHHHH
Confidence 334444554432 122234455666655542 2245554333332 22 378999999974444
Q ss_pred hh-cCeEEEEeCCeEEEecChhHHh
Q 047286 221 RN-ADCIIMVSKGKIVEKGTHDELI 244 (632)
Q Consensus 221 ~~-aD~i~vl~~G~i~~~g~~~el~ 244 (632)
+. ++++ ++|+ +.+++.
T Consensus 170 r~~~r~~---~~G~-----~~e~~~ 186 (245)
T 2jeo_A 170 RRVLRDV---RRGR-----DLEQIL 186 (245)
T ss_dssp HHHHHHT---C--------CHHHHH
T ss_pred HHHHHHH---HcCC-----CHHHHH
Confidence 43 4444 6664 455554
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.92 E-value=4.4e-11 Score=114.82 Aligned_cols=129 Identities=17% Similarity=0.241 Sum_probs=70.6
Q ss_pred eCCCEEEEEcCCCchHHHHHHHHHhCCCC-----------CcHH-hhcceEEE-----------cccCcccccccccccc
Q 047286 91 PSGTTVALVGQSGSGKSTVINLVESFRFY-----------APEA-EQEKIGLV-----------SKEPIFLFCDFNEGQY 147 (632)
Q Consensus 91 ~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~-----------~~~~-~r~~i~~v-----------~Q~~~~~~~~~~~~~~ 147 (632)
++|++++|+||||||||||+++|.+.... .|.. ....+.|. +|++++++.++.. |
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~~~g~~~~~~~~~~~~~~i~~~~~l~~~~~~~--n 79 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRDIAAGDFIEHAEFSG--N 79 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETT--E
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcccCCceEEEccHHHHHHHHHcCCCEeeeeecC--c
Confidence 57999999999999999999999753110 0100 00111122 3444455555544 3
Q ss_pred cccCCCCCCHHHHHHHHHHcc--chhh----Hh-hCCcccccc-c------------ccCCCCHHHHHHHHHHHHHHhCC
Q 047286 148 IPYGKQNASDEHIRPAVQLAN--AEKS----ID-KLPLGLDTV-V------------ATNAVDAQSERIVQAAMVKLVTN 207 (632)
Q Consensus 148 i~~~~~~~~~~~~~~~~~~~~--l~~~----i~-~l~~g~~~~-v------------~ts~LD~~~~~~i~~~l~~~~~~ 207 (632)
+ ++ .+.++++++++... +.+. .. ........+ + .++++|..+++.+.+.|.+..++
T Consensus 80 ~-~g---~~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~ 155 (198)
T 1lvg_A 80 L-YG---TSKEAVRAVQAMNRICVLDVDLQGVRSIKKTDLCPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD 155 (198)
T ss_dssp E-EE---EEHHHHHHHHHTTCEEEEECCHHHHHHHTTSSCCCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred c-CC---CCHHHHHHHHHcCCcEEEECCHHHHHHHHhcCCCcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 3 33 24666777776421 1110 00 001111111 1 26788888899999888776543
Q ss_pred ceEEEEecCchHHhhcCeEEEEeC
Q 047286 208 QTVVIVANCLITIRNADCIIMVSK 231 (632)
Q Consensus 208 ~tviiitH~~~~~~~aD~i~vl~~ 231 (632)
+.++| .. ..+|+|+++++
T Consensus 156 ---~~~a~--~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 156 ---MESSK--EP-GLFDLVIINDD 173 (198)
T ss_dssp ---TTGGG--ST-TTCSEEEECSS
T ss_pred ---HHHhh--cc-CCceEEEECCC
Confidence 24456 22 67999988764
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=2.2e-10 Score=110.86 Aligned_cols=121 Identities=13% Similarity=0.136 Sum_probs=77.6
Q ss_pred eeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHHhhcceEEEcccCcccccc---cccccccccCCC-CCCHHHHHHHHH
Q 047286 90 VPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQEKIGLVSKEPIFLFCD---FNEGQYIPYGKQ-NASDEHIRPAVQ 165 (632)
Q Consensus 90 i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~~r~~i~~v~Q~~~~~~~~---~~~~~~i~~~~~-~~~~~~~~~~~~ 165 (632)
.++|++++|+||||||||||+++|.+. +.+ .++|++|++.++..+ ..++.++.++.+ ..+.+++.+.++
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~--~~~-----~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 75 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALART--LGE-----RVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYLEHAQ 75 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHH--HGG-----GEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHH--hCC-----CeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHHHHHH
Confidence 578999999999999999999999843 222 599999998765322 222223333322 234566777777
Q ss_pred HccchhhHh----hCCcccc----ccc-----------------ccCC-------CCHHHHHHHHHHHHHH--hCCceEE
Q 047286 166 LANAEKSID----KLPLGLD----TVV-----------------ATNA-------VDAQSERIVQAAMVKL--VTNQTVV 211 (632)
Q Consensus 166 ~~~l~~~i~----~l~~g~~----~~v-----------------~ts~-------LD~~~~~~i~~~l~~~--~~~~tvi 211 (632)
..++.+.+. .++.|.. +++ ++++ ||+..+..+.+.+.+. .++.|++
T Consensus 76 ~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~ 155 (211)
T 3asz_A 76 ALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLE 155 (211)
T ss_dssp HHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHH
Confidence 665544332 3334431 111 1455 8888888888888765 2478988
Q ss_pred EEecCc
Q 047286 212 IVANCL 217 (632)
Q Consensus 212 iitH~~ 217 (632)
.++|+.
T Consensus 156 ~~~~~~ 161 (211)
T 3asz_A 156 GVVAQY 161 (211)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 889874
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=98.86 E-value=1.4e-10 Score=120.19 Aligned_cols=125 Identities=14% Similarity=0.129 Sum_probs=69.5
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHHhhcceEEEcccCcccccccccccccccCCCCCCHHHHHHHHH
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQ 165 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 165 (632)
+++.+++|++++|+||||||||||+++|.+ +++|.. +.+- +...+.+....... .+.+... ..+..+.++.
T Consensus 164 l~~~i~~g~~v~i~G~~GsGKTTll~~l~g--~~~~~~--g~i~-i~~~~e~~~~~~~~--~i~~~~g--gg~~~r~~la 234 (330)
T 2pt7_A 164 IKDGIAIGKNVIVCGGTGSGKTTYIKSIME--FIPKEE--RIIS-IEDTEEIVFKHHKN--YTQLFFG--GNITSADCLK 234 (330)
T ss_dssp HHHHHHHTCCEEEEESTTSCHHHHHHHGGG--GSCTTS--CEEE-EESSCCCCCSSCSS--EEEEECB--TTBCHHHHHH
T ss_pred hhhhccCCCEEEEECCCCCCHHHHHHHHhC--CCcCCC--cEEE-ECCeeccccccchh--EEEEEeC--CChhHHHHHH
Confidence 456778999999999999999999999984 444431 2222 22211111010111 1111100 0111122222
Q ss_pred HccchhhHhhCCccccccc---ccCCCCHHHHHHHHHHHHHHhCCc-eEEEEecCchHHhhcCeEEEEeCCeE
Q 047286 166 LANAEKSIDKLPLGLDTVV---ATNAVDAQSERIVQAAMVKLVTNQ-TVVIVANCLITIRNADCIIMVSKGKI 234 (632)
Q Consensus 166 ~~~l~~~i~~l~~g~~~~v---~ts~LD~~~~~~i~~~l~~~~~~~-tviiitH~~~~~~~aD~i~vl~~G~i 234 (632)
.+-.. -|. -.+ +++ .++.+.++.+..++ |+++++|+.+....|||+++|++|..
T Consensus 235 ~aL~~-----~p~---ilildE~~~-------~e~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 235 SCLRM-----RPD---RIILGELRS-------SEAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSNS 292 (330)
T ss_dssp HHTTS-----CCS---EEEECCCCS-------THHHHHHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHTSG
T ss_pred HHhhh-----CCC---EEEEcCCCh-------HHHHHHHHHHhcCCCEEEEEEcccHHHHHhhhheehhcCCc
Confidence 22111 111 011 122 23566777776665 79999999997778999999998853
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=6.6e-10 Score=122.79 Aligned_cols=133 Identities=13% Similarity=0.058 Sum_probs=84.5
Q ss_pred EEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHHhhcceEEEcccCcccccccccccccccCCCCCCHHHHHHHHHH
Q 047286 87 LQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQL 166 (632)
Q Consensus 87 ~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 166 (632)
+..+++|++++|+||||||||||++.+++..... -.+.+.+++|++.. .+..+ ...++ .+.++ .. .
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~---G~~vi~~~~ee~~~---~l~~~-~~~~g---~~~~~---~~-~ 340 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN---KERAILFAYEESRA---QLLRN-AYSWG---MDFEE---ME-R 340 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT---TCCEEEEESSSCHH---HHHHH-HHTTS---CCHHH---HH-H
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC---CCCEEEEEEeCCHH---HHHHH-HHHcC---CCHHH---HH-h
Confidence 3478999999999999999999999987542211 11225667787631 11110 00111 11111 11 1
Q ss_pred ccc----hhhHhhCCccccccc----------------ccCCCCHH-----HHHHHHHHHHHHh-CCceEEEEecCc---
Q 047286 167 ANA----EKSIDKLPLGLDTVV----------------ATNAVDAQ-----SERIVQAAMVKLV-TNQTVVIVANCL--- 217 (632)
Q Consensus 167 ~~l----~~~i~~l~~g~~~~v----------------~ts~LD~~-----~~~~i~~~l~~~~-~~~tviiitH~~--- 217 (632)
.++ +.....++.|..+++ +|++||+. .++.+.+.++.++ .+.|+|+++|+.
T Consensus 341 ~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilDp~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~ 420 (525)
T 1tf7_A 341 QNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFM 420 (525)
T ss_dssp TTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSS
T ss_pred CCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEcChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECccccc
Confidence 111 112334555544333 37889988 8888888888875 478999999998
Q ss_pred -------hHHhh-cCeEEEEeCCe
Q 047286 218 -------ITIRN-ADCIIMVSKGK 233 (632)
Q Consensus 218 -------~~~~~-aD~i~vl~~G~ 233 (632)
..+.. ||+|++|++|+
T Consensus 421 ~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 421 GAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp CCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred CcccccCcccceeeeEEEEEEEEE
Confidence 66654 99999999987
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=98.78 E-value=3.3e-10 Score=121.65 Aligned_cols=110 Identities=15% Similarity=0.096 Sum_probs=74.9
Q ss_pred EEEeeEEEEEecCCCChHHHHHhhhcCCChhh------------hcH--------HHH-------------------HH-
Q 047286 502 IVFEHTVALVGENGNGKSTVISLAERFHNPEQ------------VIY--------SWI-------------------II- 541 (632)
Q Consensus 502 I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~------------~~~--------~~~-------------------~~- 541 (632)
|.-+++++|+||||||||||+++|.|+++|+. +.. ... +.
T Consensus 154 i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~ 233 (438)
T 2dpy_A 154 VGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLLRMQGAA 233 (438)
T ss_dssp CBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccccccCceEEEEECCCCCHHHHHHHHH
Confidence 34445889999999999999999999988743 110 000 00
Q ss_pred H---HHHHHhcCCCccCc-ccccCCCCCChHHHHHHHHHHH--------------------H----h---h---------
Q 047286 542 K---CTNFIASLPQGSDL-NVGERGLQLSGGLKQRIARTRA--------------------R----N---Y--------- 581 (632)
Q Consensus 542 ~---~~~~i~~lp~g~dt-~vge~G~~LSgGQrQRiaiARA--------------------~----~---~--------- 581 (632)
+ ..++... .+.+. .+=+...+||+|| ||++|| + + - .
T Consensus 234 ~~~~~ae~~~~--~~~~v~~~ld~l~~lS~g~-qrvslA-l~~p~~t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~t 309 (438)
T 2dpy_A 234 YATRIAEDFRD--RGQHVLLIMDSLTRYAMAQ-REIALA-IGEPPATKGYPPSVFAKLPALVERAGNGIHGGGSITAFYT 309 (438)
T ss_dssp HHHHHHHHHHT--TTCEEEEEEECHHHHHHHH-HHHHHH-TTCCCCSSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEE
T ss_pred HHHHHHHHHHh--CCCCHHHHHHhHHHHHHHH-HHHHHH-hCCCcccccCCHHHHHHHHHHHHHHHhccCCCCcccceeE
Confidence 0 0111111 22221 1224567899999 999998 3 0 0 0
Q ss_pred -hccccchhhhhcCCEEEEEeCCeEeeecChHHHhc
Q 047286 582 -CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMK 616 (632)
Q Consensus 582 -~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~ 616 (632)
+++||+++ ...||++++|.+|+|+..|+++++..
T Consensus 310 Vlv~tHdl~-~~iad~v~~l~dG~Ivl~~~~~~~~~ 344 (438)
T 2dpy_A 310 VLTEGDDQQ-DPIADSARAILDGHIVLSRRLAEAGH 344 (438)
T ss_dssp EECSSSCSC-CHHHHHHHHHSSEEEEECHHHHHTTC
T ss_pred EEEeCCCcc-chhhceEEEEeCcEEEEeCCHHHccC
Confidence 34578888 78899999999999999999999875
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=2.6e-09 Score=122.63 Aligned_cols=139 Identities=12% Similarity=0.180 Sum_probs=76.7
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCC------CCcHHhhcceEEEcccCcccccccccccccccCCCCCCHHH
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRF------YAPEAEQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEH 159 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~------~~~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~~~ 159 (632)
++|+ ++|++++|+||||||||||+|++.++.. +-|. .+..+++++| + +..+...+++..+...... +
T Consensus 601 isl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~vpa-~~~~i~~~~~---i-~~~~~~~d~l~~~~stf~~-e 673 (800)
T 1wb9_A 601 LNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPA-QKVEIGPIDR---I-FTRVGAADDLASGRSTFMV-E 673 (800)
T ss_dssp EEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSS-SEEEECCCCE---E-EEEEC-----------CHH-H
T ss_pred cccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCcccch-hcccceeHHH---H-HhhCCHHHHHHhhhhhhhH-H
Confidence 7888 8999999999999999999999875321 1111 1233444444 1 1222222244333222111 1
Q ss_pred HHHHHHHccchhhHhhCCccccccc---ccCCCCHHHHHHH-HHHHHHHh--CCceEEEEecCchHHhhcCeEEEEeCCe
Q 047286 160 IRPAVQLANAEKSIDKLPLGLDTVV---ATNAVDAQSERIV-QAAMVKLV--TNQTVVIVANCLITIRNADCIIMVSKGK 233 (632)
Q Consensus 160 ~~~~~~~~~l~~~i~~l~~g~~~~v---~ts~LD~~~~~~i-~~~l~~~~--~~~tviiitH~~~~~~~aD~i~vl~~G~ 233 (632)
..+.... +... ..-+-.+ +++|+|+.....+ ++.++.+. .+.++|++||+.+....||++..+++|+
T Consensus 674 ~~~~~~i------l~~a-~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~ 746 (800)
T 1wb9_A 674 MTETANI------LHNA-TEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVH 746 (800)
T ss_dssp HHHHHHH------HHHC-CTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEE
T ss_pred HHHHHHH------HHhc-cCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEE
Confidence 1221111 1111 0111111 3677777655543 56666664 3789999999998777799888888888
Q ss_pred EEEec
Q 047286 234 IVEKG 238 (632)
Q Consensus 234 i~~~g 238 (632)
+....
T Consensus 747 ~~~~~ 751 (800)
T 1wb9_A 747 LDALE 751 (800)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 76543
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.2e-10 Score=112.52 Aligned_cols=96 Identities=14% Similarity=0.014 Sum_probs=65.8
Q ss_pred EEEEEecCCCChHHHHHhhhcCCChh---h---------hcHHHH----------------HHHHHHHHhcCCCc--cCc
Q 047286 507 TVALVGENGNGKSTVISLAERFHNPE---Q---------VIYSWI----------------IIKCTNFIASLPQG--SDL 556 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y~~~---~---------~~~~~~----------------~~~~~~~i~~lp~g--~dt 556 (632)
++||+||||||||||+++|.++++|. . +..... ...+.+++..++.| +++
T Consensus 24 ~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~i~~ 103 (208)
T 3c8u_A 24 LVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRLLEPRGLLPRKGAPETFDFEGFQRLCHALKHQERVIY 103 (208)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHHHHGGGTCGGGTTSGGGBCHHHHHHHHHHHHHCSCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHHHHHHhcccccCCCCchhhHHHHHHHHHHHhcCCceec
Confidence 56999999999999999999998752 1 111110 11234566666665 778
Q ss_pred ccccCCCCCChHHHHHHHHH-HHHhh--hccccc----hhhhhcCCEEEEEeC
Q 047286 557 NVGERGLQLSGGLKQRIART-RARNY--CGCGSP----PYHYKNADITSVVKN 602 (632)
Q Consensus 557 ~vge~G~~LSgGQrQRiaiA-RA~~~--~~iahr----l~~~~~aD~I~vl~~ 602 (632)
++.++|..+|+||+||+++| |+++. ...-.. ......+|.+++++-
T Consensus 104 p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~~~l~~~~d~~i~vd~ 156 (208)
T 3c8u_A 104 PLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGWRDLTAIWDVSIRLEV 156 (208)
T ss_dssp EEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTGGGGGGTCSEEEEECC
T ss_pred ccCCccccCCCCCceEEcCCCcEEEECCceeccCCchhHHHHHhcCEEEEEeC
Confidence 89999999999999999998 87432 111111 012456899888873
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.72 E-value=5.2e-09 Score=106.84 Aligned_cols=139 Identities=10% Similarity=0.101 Sum_probs=77.5
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCC-------------CCCcH------Hh--hcceEEEcccCc-cccc-cc
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFR-------------FYAPE------AE--QEKIGLVSKEPI-FLFC-DF 142 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~-------------~~~~~------~~--r~~i~~v~Q~~~-~~~~-~~ 142 (632)
++|++++|++++|+||||||||||++.|.+.. .+... .+ +..++|++|++. .++. +.
T Consensus 93 l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v 172 (302)
T 3b9q_A 93 LQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVL 172 (302)
T ss_dssp CCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHH
T ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHH
Confidence 78889999999999999999999999986431 11111 12 346999999875 4321 11
Q ss_pred ccccccc--------------cCCCCCCHHHHHHHHH-HccchhhHhhCCcccc--ccc--ccCCCCHHHHHHHHHHHHH
Q 047286 143 NEGQYIP--------------YGKQNASDEHIRPAVQ-LANAEKSIDKLPLGLD--TVV--ATNAVDAQSERIVQAAMVK 203 (632)
Q Consensus 143 ~~~~~i~--------------~~~~~~~~~~~~~~~~-~~~l~~~i~~l~~g~~--~~v--~ts~LD~~~~~~i~~~l~~ 203 (632)
.+ ++. .+........+.+.-+ ...+ ...++..-+ -.+ +|+++|+..+. ++
T Consensus 173 ~e--~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~i---aral~~~P~e~lLvLDptsglD~~~~~------~~ 241 (302)
T 3b9q_A 173 SK--AVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAV---GKIVSGAPNEILLVLDGNTGLNMLPQA------RE 241 (302)
T ss_dssp HH--HHHHHHHTTCSEEEECCCCCSSCCHHHHHHHHHHHHHH---HTTSTTCCSEEEEEEEGGGGGGGHHHH------HH
T ss_pred HH--HHHHHHHcCCcchHHhcCCCCcchhHHHHHHHHHHHHH---HHhhccCCCeeEEEEeCCCCcCHHHHH------HH
Confidence 11 111 1221222222222110 0001 112222111 111 58999987542 23
Q ss_pred Hh--CCceEEEEecC---------chHHh-hcCeEEEEeCCeEE
Q 047286 204 LV--TNQTVVIVANC---------LITIR-NADCIIMVSKGKIV 235 (632)
Q Consensus 204 ~~--~~~tviiitH~---------~~~~~-~aD~i~vl~~G~i~ 235 (632)
+. .+.|+|++||. ++... ..+.|.++..|+.+
T Consensus 242 ~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~ 285 (302)
T 3b9q_A 242 FNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 285 (302)
T ss_dssp HHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred HHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCCh
Confidence 32 37899999993 33333 37899999999753
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=98.72 E-value=2.1e-08 Score=104.31 Aligned_cols=45 Identities=22% Similarity=0.245 Sum_probs=40.1
Q ss_pred cCCCCHHHHHHHHHHHHHHh-CCceEEEEecCchHHhhcCeEEEEe
Q 047286 186 TNAVDAQSERIVQAAMVKLV-TNQTVVIVANCLITIRNADCIIMVS 230 (632)
Q Consensus 186 ts~LD~~~~~~i~~~l~~~~-~~~tviiitH~~~~~~~aD~i~vl~ 230 (632)
|++||+..+..+.+.|+++. ++.|+|++||+.+....||++++|+
T Consensus 282 ~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~~~l~ 327 (339)
T 3qkt_A 282 TPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRIS 327 (339)
T ss_dssp CTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEEEEEE
Confidence 89999999999999999874 4679999999987767799999986
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=98.72 E-value=6.3e-09 Score=108.61 Aligned_cols=153 Identities=15% Similarity=0.102 Sum_probs=85.0
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHH----------------hhcceEEEcccCcccccccccccccc
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEA----------------EQEKIGLVSKEPIFLFCDFNEGQYIP 149 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~----------------~r~~i~~v~Q~~~~~~~~~~~~~~i~ 149 (632)
+...+++|++++|+||||||||||++.+++.....|.. .++++++++|.+.++..++.+ |+.
T Consensus 124 L~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~~--ni~ 201 (349)
T 1pzn_A 124 LGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLK--HIY 201 (349)
T ss_dssp HTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHGG--GEE
T ss_pred hcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHhh--CEE
Confidence 45679999999999999999999999887542112111 134566666666544444444 455
Q ss_pred cCCCCCCHHHHHHHHHHccchhhHhhCCcccc-ccc-----ccCCCCHHH------------HHHHHHHHHHHh--CCce
Q 047286 150 YGKQNASDEHIRPAVQLANAEKSIDKLPLGLD-TVV-----ATNAVDAQS------------ERIVQAAMVKLV--TNQT 209 (632)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~-~~v-----~ts~LD~~~------------~~~i~~~l~~~~--~~~t 209 (632)
+... .......+.++. +...+.+++.|.. ..+ .|+.+|+.. ...+...|.++. .+.|
T Consensus 202 ~~~~-~~~~~~~~~l~~--~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~t 278 (349)
T 1pzn_A 202 VARA-FNSNHQMLLVQQ--AEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIA 278 (349)
T ss_dssp EEEC-CSHHHHHHHHHH--HHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred EEec-CChHHHHHHHHH--HHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcE
Confidence 4432 223333334433 3455677777652 111 378888852 234455555553 3789
Q ss_pred EEEEecCchHHhh-cCeEEEEeCCeEEEecChhHH
Q 047286 210 VVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDEL 243 (632)
Q Consensus 210 viiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el 243 (632)
+|+++|....... ++.......|++++++.+..+
T Consensus 279 vii~~h~~~~~~~~~~~~~~~~~G~~l~~~~~~rL 313 (349)
T 1pzn_A 279 VFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRV 313 (349)
T ss_dssp EEEEEECC---------------CCCCCTTCSEEE
T ss_pred EEEEcccccccccccCCccccCCcceEeecCcEEE
Confidence 9999998764432 344566777888777654444
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=98.71 E-value=2.7e-10 Score=115.69 Aligned_cols=72 Identities=10% Similarity=0.029 Sum_probs=50.7
Q ss_pred EEEEEecCCCChHHHHHhhhcCCChhh-------h--------cH---HHH--------------------HHHHHHHHh
Q 047286 507 TVALVGENGNGKSTVISLAERFHNPEQ-------V--------IY---SWI--------------------IIKCTNFIA 548 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y~~~~-------~--------~~---~~~--------------------~~~~~~~i~ 548 (632)
+|||+|+||||||||+++|.+++.++. + .. ... ...+.+++.
T Consensus 33 ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l~~~l~ 112 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQEVLN 112 (290)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHHHHHHHHH
Confidence 569999999999999999998876531 1 00 000 224568899
Q ss_pred cCCCccCcc------cccCCCCCChHHHHHHHHHHH
Q 047286 549 SLPQGSDLN------VGERGLQLSGGLKQRIARTRA 578 (632)
Q Consensus 549 ~lp~g~dt~------vge~G~~LSgGQrQRiaiARA 578 (632)
.+++|++|. +...+.++||||+||+++||+
T Consensus 113 ~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~ 148 (290)
T 1odf_A 113 TIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQK 148 (290)
T ss_dssp HHTC------CCEEEECCEETTHHHHTCEECSSCEE
T ss_pred HhhccCccccCcceeeccCccccCCccccccccccc
Confidence 999998864 456678999999999999865
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=98.68 E-value=2e-10 Score=121.13 Aligned_cols=110 Identities=21% Similarity=0.270 Sum_probs=61.1
Q ss_pred eeEEEEEecCCCChHHHHHhhhcCCChhh----hcHH-----------------HHHH----------------------
Q 047286 505 EHTVALVGENGNGKSTVISLAERFHNPEQ----VIYS-----------------WIII---------------------- 541 (632)
Q Consensus 505 ~~~vaIVG~SGsGKSTL~~ll~r~y~~~~----~~~~-----------------~~~~---------------------- 541 (632)
++++|||||||||||||+++|.|+|+|+. .... ..+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~~~~~~~~~~I~~~~q~~~~~~~t~~~nl~~~~~ 249 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMALGHQRYIDYAVRHSHKIAFIDT 249 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTTSSCTTTHHHHHHHHHHHHHHHHHHCSSEEEESS
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcccCChhHHHHHHHHHHHHHHHHHhccCCEEEEeC
Confidence 45789999999999999999999998754 1000 0000
Q ss_pred --------------HHHHHHhcCCCc--cCccc-c-------cCCCCCChHHHHHHHHHHHHhh---------hccccch
Q 047286 542 --------------KCTNFIASLPQG--SDLNV-G-------ERGLQLSGGLKQRIARTRARNY---------CGCGSPP 588 (632)
Q Consensus 542 --------------~~~~~i~~lp~g--~dt~v-g-------e~G~~LSgGQrQRiaiARA~~~---------~~iahrl 588 (632)
....++..++.+ ++..+ + ++|.++|+||+||++|+|++.. ++++|..
T Consensus 250 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 250 DFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS 329 (365)
T ss_dssp CHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred CchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 001233444433 44322 3 6778899999999999999832 3344543
Q ss_pred hhhhcCCEEEEEeCCeEeeecChHHHhc
Q 047286 589 YHYKNADITSVVKNGVIAEKGRHDALMK 616 (632)
Q Consensus 589 ~~~~~aD~I~vl~~G~ive~G~h~eL~~ 616 (632)
..-+-+|++.++++ +++.|+-+||.+
T Consensus 330 ~~~r~~~~i~~i~~--~l~~~~~~~~~~ 355 (365)
T 1lw7_A 330 YLDRYNQVKAVIEK--VLNEEEISELQN 355 (365)
T ss_dssp HHHHHHHHHHHHHH--HTSCCCCSSCCC
T ss_pred HHHHHHHHHHHHHH--HhcccchhHhhc
Confidence 33344566655554 556666666654
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=1.8e-08 Score=102.80 Aligned_cols=30 Identities=23% Similarity=0.250 Sum_probs=27.8
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHh
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~ 115 (632)
+++.+++|++++|+||||||||||++.|.+
T Consensus 28 i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 28 KTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp HHCSBCTTCEEEEEESTTSSHHHHHHHHHH
T ss_pred HhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 778899999999999999999999998864
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.6e-08 Score=105.57 Aligned_cols=53 Identities=11% Similarity=0.154 Sum_probs=47.4
Q ss_pred cCCCCHHHHHHHHHHHHHHhCCceEEEEecCchHHhhcCeEEEEeCCeEEEecChhHH
Q 047286 186 TNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDEL 243 (632)
Q Consensus 186 ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el 243 (632)
|++||+..++.+.+.+.++. .|+|++||. +. .||++++|++|++++.|+++++
T Consensus 302 ~s~LD~~~~~~l~~~l~~~~--qt~i~~th~-~~--~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 302 TAELDPHRRQYLLDLAASVP--QAIVTGTEL-AP--GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp GGCCCHHHHHHHHHHHHHSS--EEEEEESSC-CT--TCSEEEEEETTEEEECCCTTTS
T ss_pred cccCCHHHHHHHHHHHHhcC--cEEEEEEec-cc--cCCEEEEEECCEEEecCCHHHH
Confidence 89999999999999998874 799999994 43 8999999999999999998876
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=1.2e-08 Score=116.31 Aligned_cols=132 Identities=13% Similarity=0.177 Sum_probs=72.8
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCC------CCcHHhhcceEEEcccCcccccccccccccccCCCCCCHHH
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRF------YAPEAEQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEH 159 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~------~~~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~~~ 159 (632)
++|+ |++++|+||||||||||+|++.++.. +.|. .+..+++++| +| ..+...+|+..+....
T Consensus 572 isl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa-~~~~i~~v~~---i~-~~~~~~d~l~~g~S~~---- 639 (765)
T 1ewq_A 572 LEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPA-EEAHLPLFDG---IY-TRIGASDDLAGGKSTF---- 639 (765)
T ss_dssp EEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSS-SEEEECCCSE---EE-EECCC------CCSHH----
T ss_pred ccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceeeh-hccceeeHHH---hh-ccCCHHHHHHhcccHH----
Confidence 5554 99999999999999999998865421 1121 2455777776 22 2233333565543211
Q ss_pred HHHHHHHccchhhHhhCCccccccc------ccCCCCHHHH-HHHHHHHHHHhCCceEEEEecCchHHhhcCeEEEEeCC
Q 047286 160 IRPAVQLANAEKSIDKLPLGLDTVV------ATNAVDAQSE-RIVQAAMVKLVTNQTVVIVANCLITIRNADCIIMVSKG 232 (632)
Q Consensus 160 ~~~~~~~~~l~~~i~~l~~g~~~~v------~ts~LD~~~~-~~i~~~l~~~~~~~tviiitH~~~~~~~aD~i~vl~~G 232 (632)
..+..+.+. .+.... .-+-.+ +|+++|+.+. ..+.+.+.+ .+.|+|++||+.+....+ .-.+.++
T Consensus 640 ~~e~~~la~---il~~a~-~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~--~g~~vl~~TH~~~l~~~~--~~~v~n~ 711 (765)
T 1ewq_A 640 MVEMEEVAL---ILKEAT-ENSLVLLDEVGRGTSSLDGVAIATAVAEALHE--RRAYTLFATHYFELTALG--LPRLKNL 711 (765)
T ss_dssp HHHHHHHHH---HHHHCC-TTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCHHHHTCC--CTTEEEE
T ss_pred HHHHHHHHH---HHHhcc-CCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHhh--hhcceEE
Confidence 111112111 111110 001111 3899999875 568888876 578999999998876655 2223455
Q ss_pred eEEEe
Q 047286 233 KIVEK 237 (632)
Q Consensus 233 ~i~~~ 237 (632)
++...
T Consensus 712 ~~~~~ 716 (765)
T 1ewq_A 712 HVAAR 716 (765)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55443
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.65 E-value=1e-09 Score=110.35 Aligned_cols=27 Identities=26% Similarity=0.445 Sum_probs=23.0
Q ss_pred EEEEEecCCCChHHHHHhhhcCCChhh
Q 047286 507 TVALVGENGNGKSTVISLAERFHNPEQ 533 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y~~~~ 533 (632)
++|||||||||||||+++|+|++.|++
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~ 30 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRK 30 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 689999999999999999999987754
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=6.3e-10 Score=114.22 Aligned_cols=93 Identities=15% Similarity=0.024 Sum_probs=58.0
Q ss_pred eEEEEEecCCCChHHHHHhhhcCCChhh-------------hcHHHH-----------------HHHHHHHHhcCCCccC
Q 047286 506 HTVALVGENGNGKSTVISLAERFHNPEQ-------------VIYSWI-----------------IIKCTNFIASLPQGSD 555 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r~y~~~~-------------~~~~~~-----------------~~~~~~~i~~lp~g~d 555 (632)
.++||+||||||||||+++|.++++|.. +..... ...+.+++..+..|+.
T Consensus 91 ~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~~~~~ 170 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVTSVKSGSD 170 (312)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHHHTTCS
T ss_pred EEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHHHhCCCcc
Confidence 3569999999999999999999876521 000010 1123345554444443
Q ss_pred -cccccCCCCCChHHHHHHHHHHHHhh---h------ccc---cchhhhhcCCEEEEEeC
Q 047286 556 -LNVGERGLQLSGGLKQRIARTRARNY---C------GCG---SPPYHYKNADITSVVKN 602 (632)
Q Consensus 556 -t~vge~G~~LSgGQrQRiaiARA~~~---~------~ia---hrl~~~~~aD~I~vl~~ 602 (632)
..+ ..||||||||+++|||++. + ... +....-+..|..++++.
T Consensus 171 ~~~~----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~~~l~~~~D~~I~V~a 226 (312)
T 3aez_A 171 YACA----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPTLMVSDLFDFSLYVDA 226 (312)
T ss_dssp CEEE----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSSCCGGGGCSEEEEEEE
T ss_pred cCCc----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCcchHHHHHhcCcEEEEEC
Confidence 223 3799999999999999664 1 111 22333456787777753
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=4.2e-09 Score=108.06 Aligned_cols=92 Identities=11% Similarity=0.075 Sum_probs=61.4
Q ss_pred eeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHHhhcceEEEcccCccccccccccccccc----CCC-CCCHHHHHHHH
Q 047286 90 VPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQEKIGLVSKEPIFLFCDFNEGQYIPY----GKQ-NASDEHIRPAV 164 (632)
Q Consensus 90 i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~----~~~-~~~~~~~~~~~ 164 (632)
+++|++++|+||||||||||+++|.++.. +..-..++++++|++.++..+..+ |+.+ +.+ ..+.+.+.+.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~--~~~G~~~v~~v~qd~~~~~~t~~e--~~~~~~~~g~~~~~d~~~~~~~L 162 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLA--RWDHHPRVDLVTTDGFLYPNAELQ--RRNLMHRKGFPESYNRRALMRFV 162 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHH--TSTTCCCEEEEEGGGGBCCHHHHH--HTTCTTCTTSGGGBCHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcc--ccCCCCeEEEEecCccCCcccHHH--HHHHHHhcCCChHHHHHHHHHHH
Confidence 78999999999999999999999985422 111125699999998766555444 4433 211 22345566666
Q ss_pred HHccc---hhhHhhCCcccccccc
Q 047286 165 QLANA---EKSIDKLPLGLDTVVA 185 (632)
Q Consensus 165 ~~~~l---~~~i~~l~~g~~~~v~ 185 (632)
+..+. +..+..|++|+.++++
T Consensus 163 ~~l~~~~~~~~~~~lS~G~~qRv~ 186 (312)
T 3aez_A 163 TSVKSGSDYACAPVYSHLHYDIIP 186 (312)
T ss_dssp HHHHTTCSCEEEEEEETTTTEEEE
T ss_pred HHhCCCcccCCcccCChhhhhhhh
Confidence 65541 1345678889887763
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.64 E-value=2.4e-08 Score=103.98 Aligned_cols=141 Identities=11% Similarity=0.100 Sum_probs=79.2
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCC-------------CCCcH------Hh--hcceEEEcccCc-cccc-c
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFR-------------FYAPE------AE--QEKIGLVSKEPI-FLFC-D 141 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~-------------~~~~~------~~--r~~i~~v~Q~~~-~~~~-~ 141 (632)
.++|++++|++++|+||||||||||++.|.+.. .+.+. .+ +..++|++|++. .+.. +
T Consensus 149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~t 228 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATV 228 (359)
T ss_dssp SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHH
T ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhh
Confidence 378889999999999999999999999986431 11111 12 457999999875 3321 1
Q ss_pred cccccccc--------------cCCCCCCHHHHHHHHH-HccchhhHhhCCc--ccccccccCCCCHHHHHHHHHHHHHH
Q 047286 142 FNEGQYIP--------------YGKQNASDEHIRPAVQ-LANAEKSIDKLPL--GLDTVVATNAVDAQSERIVQAAMVKL 204 (632)
Q Consensus 142 ~~~~~~i~--------------~~~~~~~~~~~~~~~~-~~~l~~~i~~l~~--g~~~~v~ts~LD~~~~~~i~~~l~~~ 204 (632)
..+ ++. .+........+.+.-+ ...+...+..-|. =+--- +|+++|+.++. +++
T Consensus 229 v~e--~l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLD-pttglD~~~~~------~~~ 299 (359)
T 2og2_A 229 LSK--AVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REF 299 (359)
T ss_dssp HHH--HHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH------HHH
T ss_pred HHH--HHHHHHhCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH------HHH
Confidence 111 111 1222222222222110 0011111111122 11111 68999987653 223
Q ss_pred h--CCceEEEEecC---------chHHh-hcCeEEEEeCCeE
Q 047286 205 V--TNQTVVIVANC---------LITIR-NADCIIMVSKGKI 234 (632)
Q Consensus 205 ~--~~~tviiitH~---------~~~~~-~aD~i~vl~~G~i 234 (632)
. .+.|+|++||. ++... ..+.|.++..|+.
T Consensus 300 ~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 300 NEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp HHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred HHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 2 37899999993 33333 3789999999974
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=98.63 E-value=3.3e-08 Score=96.53 Aligned_cols=48 Identities=15% Similarity=0.136 Sum_probs=35.1
Q ss_pred cCCC--CHHHHHHHHHHHHHHh--CCceEEEEecCc--------hHHh-hcCeEEEEeCCe
Q 047286 186 TNAV--DAQSERIVQAAMVKLV--TNQTVVIVANCL--------ITIR-NADCIIMVSKGK 233 (632)
Q Consensus 186 ts~L--D~~~~~~i~~~l~~~~--~~~tviiitH~~--------~~~~-~aD~i~vl~~G~ 233 (632)
++.+ |+...+.+.+.|+++. .+.|+|+++|+. ..+. .||+|++|++.+
T Consensus 133 ~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~~ 193 (235)
T 2w0m_A 133 SALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRMI 193 (235)
T ss_dssp GGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEEE
T ss_pred hHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEEe
Confidence 4444 9888888888888874 378999999998 3355 499999998653
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=98.63 E-value=2.3e-08 Score=115.82 Aligned_cols=136 Identities=13% Similarity=0.120 Sum_probs=72.2
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHHhhcceEEEcccCccc------ccccccccccccCCCCCCHHH
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQEKIGLVSKEPIFL------FCDFNEGQYIPYGKQNASDEH 159 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~~r~~i~~v~Q~~~~~------~~~~~~~~~i~~~~~~~~~~~ 159 (632)
++|++++|++++|+||||||||||+|++.++.. ..+.-.++|++...+ +..+...+++..+..... .+
T Consensus 666 vsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~-----~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~~~~stfs-~e 739 (918)
T 3thx_B 666 TDLSEDSERVMIITGPNMGGKSSYIKQVALITI-----MAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFM-EE 739 (918)
T ss_dssp EEECTTSCCEEEEESCCCHHHHHHHHHHHHHHH-----HHHHTCCBSSSEEEEECCSEEEEEC----------CCHH-HH
T ss_pred ccccCCCCeEEEEECCCCCchHHHHHHHHHHHH-----HhhcCccccchhhhhhHHHHHHHhCChHHHHHHhHHHhh-HH
Confidence 899999999999999999999999998853211 000111233221100 001111112221111111 11
Q ss_pred HHHHHHHccchhhHhhCCccccccc----ccCCCCHHHHHHHH-HHHHHHh--CCceEEEEecCchHHhhcCeEEE-EeC
Q 047286 160 IRPAVQLANAEKSIDKLPLGLDTVV----ATNAVDAQSERIVQ-AAMVKLV--TNQTVVIVANCLITIRNADCIIM-VSK 231 (632)
Q Consensus 160 ~~~~~~~~~l~~~i~~l~~g~~~~v----~ts~LD~~~~~~i~-~~l~~~~--~~~tviiitH~~~~~~~aD~i~v-l~~ 231 (632)
..+....+. .. .....+ +++|+|+.....+. ..++.+. .+.|+|++||+++....||+.-- +.+
T Consensus 740 m~~~~~il~------~a--~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~~~~~v~n 811 (918)
T 3thx_B 740 LTDTAEIIR------KA--TSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYSHQVGN 811 (918)
T ss_dssp HHHHHHHHH------HC--CTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHTTTTEEE
T ss_pred HHHHHHHHH------hc--cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhhcccceEE
Confidence 122221111 10 011112 48999999888876 5666653 47899999999987776766431 445
Q ss_pred CeEE
Q 047286 232 GKIV 235 (632)
Q Consensus 232 G~i~ 235 (632)
+++.
T Consensus 812 ~~~~ 815 (918)
T 3thx_B 812 YHMG 815 (918)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5543
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=98.58 E-value=1.2e-08 Score=114.36 Aligned_cols=137 Identities=20% Similarity=0.257 Sum_probs=77.5
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCC-C------------------cHHhhcceEEEcccCcccccccccccccccCCCCCC
Q 047286 96 VALVGQSGSGKSTVINLVESFRFY-A------------------PEAEQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNAS 156 (632)
Q Consensus 96 ~~ivG~sGsGKSTLl~ll~~~~~~-~------------------~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~ 156 (632)
++|+||||||||||+++|.|+... + ...+++.++|++|++.++. ..+..+|+.+.
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~-~~tv~e~i~~~----- 121 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISD-ASEVEKEINKA----- 121 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCC-HHHHHTTHHHH-----
T ss_pred EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCC-HHHHHHHHHHH-----
Confidence 999999999999999999976322 0 0124567888888875432 11111132211
Q ss_pred HHHHHHHHHHc--cchh---------------hHhhCCcccccccccCCCCHHHHHHHHHHHHHHh-C--CceEEEEecC
Q 047286 157 DEHIRPAVQLA--NAEK---------------SIDKLPLGLDTVVATNAVDAQSERIVQAAMVKLV-T--NQTVVIVANC 216 (632)
Q Consensus 157 ~~~~~~~~~~~--~l~~---------------~i~~l~~g~~~~v~ts~LD~~~~~~i~~~l~~~~-~--~~tviiitH~ 216 (632)
....... +..+ .+-..|+ + ...+|++||+..++.+.+.++++. + +.++++++|+
T Consensus 122 ----~~~~~~~~~~~s~~~i~l~i~~~~~p~LlLlDePG-i-~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~ 195 (608)
T 3szr_A 122 ----QNAIAGEGMGISHELITLEISSRDVPDLTLIDLPG-I-TRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSN 195 (608)
T ss_dssp ----HHHHHCSSSCCCSCCEEEEEEESSSCCEEEEECCC--------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESS
T ss_pred ----HHHhcCCccccchHHHHHHhcCCCCCceeEeeCCC-c-cccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEecc
Confidence 0000000 0000 0111121 0 112389999999999999999963 3 4578888998
Q ss_pred chH--------Hhh-----cCeEEEEeCCeEEEecChhHHh
Q 047286 217 LIT--------IRN-----ADCIIMVSKGKIVEKGTHDELI 244 (632)
Q Consensus 217 ~~~--------~~~-----aD~i~vl~~G~i~~~g~~~el~ 244 (632)
++. +.. ...|+|+.++.++..|+.+++.
T Consensus 196 ~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~~~~~ 236 (608)
T 3szr_A 196 VDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKVV 236 (608)
T ss_dssp SCTTTCHHHHHHHHHCSSCCSEEEEEECGGGSSSSSTTCCC
T ss_pred chhccHHHHHHHHHHhhcCCceEEEecchhhcCcccHHHHH
Confidence 652 122 3568999999988888765543
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=3.2e-09 Score=110.45 Aligned_cols=111 Identities=9% Similarity=0.047 Sum_probs=73.6
Q ss_pred EEEeeEEEEEecCCCChHHHHHhhhcCCChhhhc---------HH-HH--------------------------------
Q 047286 502 IVFEHTVALVGENGNGKSTVISLAERFHNPEQVI---------YS-WI-------------------------------- 539 (632)
Q Consensus 502 I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~~~---------~~-~~-------------------------------- 539 (632)
|.-++++||+||+|||||||+++|.|+.+|+... .. ..
T Consensus 68 i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~~~~~~~r~~~~~~ 147 (347)
T 2obl_A 68 CGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTSDRPALERMKAAFT 147 (347)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECTTSCHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECCCCCHHHHHHHHHH
Confidence 4445589999999999999999999998875310 00 00
Q ss_pred HHHHHHHHhcCCCccCcc-cccCCCCCChHHHHHHHHHHH------------------Hh------h----------hcc
Q 047286 540 IIKCTNFIASLPQGSDLN-VGERGLQLSGGLKQRIARTRA------------------RN------Y----------CGC 584 (632)
Q Consensus 540 ~~~~~~~i~~lp~g~dt~-vge~G~~LSgGQrQRiaiARA------------------~~------~----------~~i 584 (632)
...+.++... .|.+.. +-+.-.+||+|| ||+++|.. ++ . ++.
T Consensus 148 ~~~~ae~~~~--~~~~vl~~ld~~~~lS~g~-r~v~lal~~p~~t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~ 224 (347)
T 2obl_A 148 ATTIAEYFRD--QGKNVLLMMDSVTRYARAA-RDVGLASGEPDVRGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLE 224 (347)
T ss_dssp HHHHHHHHHT--TTCEEEEEEETHHHHHHHH-HHHHHHTTCCCCBTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECC
T ss_pred HHHHHHHHHh--ccccHHHHHhhHHHHHHHH-HHHHHHcCCCCcccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEe
Confidence 0011122111 232211 113456799999 99999932 00 0 345
Q ss_pred ccchhhhhcCCEEEEEeCCeEeeecChHHHhc
Q 047286 585 GSPPYHYKNADITSVVKNGVIAEKGRHDALMK 616 (632)
Q Consensus 585 ahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~ 616 (632)
+|.++ -.-||+++++.+|+|+..|+.+++..
T Consensus 225 thdl~-~~i~d~v~~i~dG~Ivl~~~l~~~~~ 255 (347)
T 2obl_A 225 SDNVN-DPIGDEVRSILDGHIVLTRELAEENH 255 (347)
T ss_dssp SSCCC-CHHHHHHHHHCSEEEEBCHHHHTTTC
T ss_pred CCCCC-ChhhhheEEeeCcEEEEeCCHHHcCC
Confidence 78877 56799999999999999999888753
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.2e-09 Score=114.62 Aligned_cols=30 Identities=23% Similarity=0.468 Sum_probs=27.8
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHh
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~ 115 (632)
+++.+++|++++|+||||||||||+++|.+
T Consensus 168 l~~~i~~G~~i~ivG~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 168 LRRAVQLERVIVVAGETGSGKTTLMKALMQ 197 (361)
T ss_dssp HHHHHHTTCCEEEEESSSSCHHHHHHHHHT
T ss_pred HHHHHhcCCEEEEECCCCCCHHHHHHHHHh
Confidence 677889999999999999999999999984
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.4e-08 Score=101.50 Aligned_cols=119 Identities=18% Similarity=0.180 Sum_probs=64.1
Q ss_pred eeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHHhhcce-------EEEcccCcccccccccccccccCCCCCCHHHHHH
Q 047286 90 VPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQEKI-------GLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRP 162 (632)
Q Consensus 90 i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~~r~~i-------~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 162 (632)
+++|++++|+||||||||||+++|.+. ++|. ....| .|++|++..+ +.. ..++..... +..
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~--~~~~-~~G~I~~~g~~i~~~~~~~~~~---v~q---~~~gl~~~~---l~~ 89 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDY--INQT-KSYHIITIEDPIEYVFKHKKSI---VNQ---REVGEDTKS---FAD 89 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHH--HHHH-CCCEEEEEESSCCSCCCCSSSE---EEE---EEBTTTBSC---HHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHh--CCCC-CCCEEEEcCCcceeecCCccee---eeH---HHhCCCHHH---HHH
Confidence 899999999999999999999999843 3332 01222 2333322110 000 011111111 111
Q ss_pred HHHHccchhhHhhCCcccccccccCCCCHHHHHHHHHHHHHHhCCceEEEEecCchHHhhcCeEEEEeC
Q 047286 163 AVQLANAEKSIDKLPLGLDTVVATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRNADCIIMVSK 231 (632)
Q Consensus 163 ~~~~~~l~~~i~~l~~g~~~~v~ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~aD~i~vl~~ 231 (632)
++..+ +..-|. -.+.-.--|+++...+ ++....+.++++++|+.+....|||+++|..
T Consensus 90 ~la~a-----L~~~p~---illlDEp~D~~~~~~~---l~~~~~g~~vl~t~H~~~~~~~~dri~~l~~ 147 (261)
T 2eyu_A 90 ALRAA-----LREDPD---VIFVGEMRDLETVETA---LRAAETGHLVFGTLHTNTAIDTIHRIVDIFP 147 (261)
T ss_dssp HHHHH-----HHHCCS---EEEESCCCSHHHHHHH---HHHHHTTCEEEEEECCSSHHHHHHHHHHTSC
T ss_pred HHHHH-----HhhCCC---EEEeCCCCCHHHHHHH---HHHHccCCEEEEEeCcchHHHHHHHHhhhcC
Confidence 22111 111121 1111011188776544 3344568899999999987777999988854
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=98.53 E-value=3.4e-08 Score=93.63 Aligned_cols=43 Identities=23% Similarity=0.257 Sum_probs=32.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCC-----------CCcHHhhcceEEEcccC
Q 047286 93 GTTVALVGQSGSGKSTVINLVESFRF-----------YAPEAEQEKIGLVSKEP 135 (632)
Q Consensus 93 Ge~~~ivG~sGsGKSTLl~ll~~~~~-----------~~~~~~r~~i~~v~Q~~ 135 (632)
|++++|+||||||||||+++|.+... .....+++++||++|+.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~~~Gi~~~g~~~~~~~~~~~~ig~~~~~~ 54 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTL 54 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECCEEETTSSEEEEEEEET
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcccCCEEEcCEecchhHhhhceEEEEEEec
Confidence 78999999999999999999875321 01123467899999975
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=98.49 E-value=6e-09 Score=98.81 Aligned_cols=54 Identities=4% Similarity=0.011 Sum_probs=37.0
Q ss_pred CCCCHHHHHHHHHHHHHHhC-CceEEEEecC-chHHhh-cCeEEEEeCCeEEEecChhHH
Q 047286 187 NAVDAQSERIVQAAMVKLVT-NQTVVIVANC-LITIRN-ADCIIMVSKGKIVEKGTHDEL 243 (632)
Q Consensus 187 s~LD~~~~~~i~~~l~~~~~-~~tviiitH~-~~~~~~-aD~i~vl~~G~i~~~g~~~el 243 (632)
.++|+...+. ++.+..+.. +.++|.+||. ++.++. ||+|+ ++|+++.+|+++-+
T Consensus 126 ~~ld~~~~~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 126 EQMGERCLEL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp ---CGGGGHH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC------
T ss_pred ccCCHHHHHH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCch
Confidence 5788877777 777777643 5789999998 887765 99998 99999999987765
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=98.44 E-value=1.7e-09 Score=102.64 Aligned_cols=102 Identities=15% Similarity=0.080 Sum_probs=63.8
Q ss_pred eEEEEEecCCCChHHHHHhhhcCCChhhh-cHHH-HHHHHH------HH-----------HhcC----C-CccCcccccC
Q 047286 506 HTVALVGENGNGKSTVISLAERFHNPEQV-IYSW-IIIKCT------NF-----------IASL----P-QGSDLNVGER 561 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r~y~~~~~-~~~~-~~~~~~------~~-----------i~~l----p-~g~dt~vge~ 561 (632)
++++|+||+|||||||+++|.+++. ++- ...- ...++. .+ +..+ + ...+..+|+.
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~-~~Gi~~~g~~~~~~~~~~~~ig~~~~~~~g~~~~l~~~~~~~~~~~~~~~v~~~ 80 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK-SSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRVGLEPPPGKRECRVGQY 80 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH-HTTCCCEEEECCEEETTSSEEEEEEEETTSCEEEEEECCCCCCSSSCCEESSSS
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc-cCCEEEcCEecchhHhhhceEEEEEEecccceehhhcccccCCccccccccceE
Confidence 3689999999999999999999875 321 0000 000000 00 0000 0 0022367888
Q ss_pred CCCCChHHHHHH-HHHH---HHhh---------------------------------hc---cc--cchhhhhcCCEEEE
Q 047286 562 GLQLSGGLKQRI-ARTR---ARNY---------------------------------CG---CG--SPPYHYKNADITSV 599 (632)
Q Consensus 562 G~~LSgGQrQRi-aiAR---A~~~---------------------------------~~---ia--hrl~~~~~aD~I~v 599 (632)
|..+|+|||+++ +++| |... ++ ++ |+.+ ...+|+|..
T Consensus 81 ~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~~~~ilgti~vsh~~~-~~~vd~i~~ 159 (189)
T 2i3b_A 81 VVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIILGTIPVPKGKP-LALVEEIRN 159 (189)
T ss_dssp EECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSCCEEEECCCCCSSC-CTTHHHHHT
T ss_pred EEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhCCCcEEEEEeecCCCCc-hHHHHHHee
Confidence 889999999998 6666 4211 22 34 8765 566789999
Q ss_pred EeCCeEeeec
Q 047286 600 VKNGVIAEKG 609 (632)
Q Consensus 600 l~~G~ive~G 609 (632)
+++|+|++-.
T Consensus 160 ~~~~~i~~~~ 169 (189)
T 2i3b_A 160 RKDVKVFNVT 169 (189)
T ss_dssp TCCSEEEECC
T ss_pred cCCcEEEEeC
Confidence 9999999843
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=1e-06 Score=85.15 Aligned_cols=39 Identities=23% Similarity=0.285 Sum_probs=30.7
Q ss_pred eeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHHhhcceEEEcccC
Q 047286 90 VPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQEKIGLVSKEP 135 (632)
Q Consensus 90 i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~~r~~i~~v~Q~~ 135 (632)
+++|++++|+||||||||||++.+.+ .....+.|+..+.
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~-------~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGL-------LSGKKVAYVDTEG 55 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHH-------HHCSEEEEEESSC
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH-------HcCCcEEEEECCC
Confidence 78999999999999999999999974 1123466665544
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=98.40 E-value=1.2e-07 Score=96.71 Aligned_cols=123 Identities=17% Similarity=0.106 Sum_probs=65.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCC-------------CCc---HH---h--hcceEEEcccCccccc-ccccc----
Q 047286 92 SGTTVALVGQSGSGKSTVINLVESFRF-------------YAP---EA---E--QEKIGLVSKEPIFLFC-DFNEG---- 145 (632)
Q Consensus 92 ~Ge~~~ivG~sGsGKSTLl~ll~~~~~-------------~~~---~~---~--r~~i~~v~Q~~~~~~~-~~~~~---- 145 (632)
+|++++|+||||||||||+++|.+... +.+ .+ + +..+++++|++.++.. +..++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 699999999999999999999864310 111 11 1 3568999998754321 11110
Q ss_pred -----cccc---cCCCCCCHHHHHHHHHHccchh-hHhhCCcccccccccCCCCHHHHHHHHHHHHHHhC--CceEEEEe
Q 047286 146 -----QYIP---YGKQNASDEHIRPAVQLANAEK-SIDKLPLGLDTVVATNAVDAQSERIVQAAMVKLVT--NQTVVIVA 214 (632)
Q Consensus 146 -----~~i~---~~~~~~~~~~~~~~~~~~~l~~-~i~~l~~g~~~~v~ts~LD~~~~~~i~~~l~~~~~--~~tviiit 214 (632)
+.+. .+........+.+. +. ... ....++..-+.. .-.||+.+.+.+.+.++++.+ +.|+|++|
T Consensus 181 ~~~~~d~~llDt~G~~~~~~~~~~eL-s~--~r~~iaRal~~~P~~~--lLvLDa~t~~~~~~~~~~~~~~~~~t~iivT 255 (304)
T 1rj9_A 181 KARGYDLLFVDTAGRLHTKHNLMEEL-KK--VKRAIAKADPEEPKEV--WLVLDAVTGQNGLEQAKKFHEAVGLTGVIVT 255 (304)
T ss_dssp HHHTCSEEEECCCCCCTTCHHHHHHH-HH--HHHHHHHHCTTCCSEE--EEEEETTBCTHHHHHHHHHHHHHCCSEEEEE
T ss_pred HhCCCCEEEecCCCCCCchHHHHHHH-HH--HHHHHHHhhcCCCCeE--EEEEcHHHHHHHHHHHHHHHHHcCCcEEEEE
Confidence 0000 11111122222111 10 000 011222211111 127888887778888877643 78999999
Q ss_pred cCchH
Q 047286 215 NCLIT 219 (632)
Q Consensus 215 H~~~~ 219 (632)
|+...
T Consensus 256 h~d~~ 260 (304)
T 1rj9_A 256 KLDGT 260 (304)
T ss_dssp CTTSS
T ss_pred CCccc
Confidence 97643
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=98.39 E-value=4.3e-07 Score=94.44 Aligned_cols=25 Identities=28% Similarity=0.600 Sum_probs=21.0
Q ss_pred cEEEee-EEEEEecCCCChHHHHHhh
Q 047286 501 DIVFEH-TVALVGENGNGKSTVISLA 525 (632)
Q Consensus 501 ~I~f~~-~vaIVG~SGsGKSTL~~ll 525 (632)
.|+|+. ..+|+||+|||||||+.+|
T Consensus 18 ~i~f~~~~~~i~G~NGsGKS~lleAi 43 (339)
T 3qkt_A 18 VVEFKEGINLIIGQNGSGKSSLLDAI 43 (339)
T ss_dssp EEECCSEEEEEECCTTSSHHHHHHHH
T ss_pred EEcCCCCeEEEECCCCCCHHHHHHHH
Confidence 466653 7899999999999999965
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.37 E-value=6.9e-08 Score=92.49 Aligned_cols=30 Identities=13% Similarity=0.269 Sum_probs=24.5
Q ss_pred EEEeeCCCEEEEEcCCCchHHHHHHHHHhC
Q 047286 87 LQHVPSGTTVALVGQSGSGKSTVINLVESF 116 (632)
Q Consensus 87 ~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~ 116 (632)
|+++++|++++|+||||||||||+++|.+.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 567889999999999999999999999854
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=98.37 E-value=6.7e-08 Score=88.77 Aligned_cols=32 Identities=25% Similarity=0.227 Sum_probs=29.3
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCC
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFR 117 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~ 117 (632)
+||++++|++++|+||||||||||+++|.+..
T Consensus 26 vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 26 LKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cccccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 77889999999999999999999999998653
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=4.4e-08 Score=103.10 Aligned_cols=26 Identities=31% Similarity=0.350 Sum_probs=24.3
Q ss_pred eeCCCEEEEEcCCCchHHHHHHHHHh
Q 047286 90 VPSGTTVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 90 i~~Ge~~~ivG~sGsGKSTLl~ll~~ 115 (632)
+++|++++|+||||||||||+++|.+
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 68999999999999999999999974
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.35 E-value=1.8e-07 Score=95.59 Aligned_cols=90 Identities=18% Similarity=0.245 Sum_probs=57.0
Q ss_pred EEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHH-----------------h-hcceEEEcccCccc-----------
Q 047286 88 QHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEA-----------------E-QEKIGLVSKEPIFL----------- 138 (632)
Q Consensus 88 ~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~-----------------~-r~~i~~v~Q~~~~~----------- 138 (632)
|++.+|++++|+||||||||||+|+|.++....... . .+.+++++|.|.+.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 456789999999999999999999997543211100 0 12589999998531
Q ss_pred ----ccccccccccccCCC---CCCHHHHHHHHHHccch-hhHhhCCc
Q 047286 139 ----FCDFNEGQYIPYGKQ---NASDEHIRPAVQLANAE-KSIDKLPL 178 (632)
Q Consensus 139 ----~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~~l~-~~i~~l~~ 178 (632)
+..++. +|+.++.. .....++.++++..++. +..+.+|.
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~ 290 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVK 290 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHH
Confidence 223333 46665321 22345677888888873 44555443
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.33 E-value=9.9e-08 Score=101.09 Aligned_cols=66 Identities=20% Similarity=0.303 Sum_probs=46.1
Q ss_pred EEEEeeCCCE--EEEEcCCCchHHHHHHHHHhCCCCC-------cHHhhcceEEEcccCcccccccccccccccCC
Q 047286 86 FLQHVPSGTT--VALVGQSGSGKSTVINLVESFRFYA-------PEAEQEKIGLVSKEPIFLFCDFNEGQYIPYGK 152 (632)
Q Consensus 86 ~~~~i~~Ge~--~~ivG~sGsGKSTLl~ll~~~~~~~-------~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~ 152 (632)
+||++++|++ ++|+||||||||||+|+|.|..... +...++.++|++|++.++. .++..+++.++.
T Consensus 33 vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ltv~D~~~~g~ 107 (427)
T 2qag_B 33 VNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRL-KLTIVSTVGFGD 107 (427)
T ss_dssp HHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEE-EEEEEEEECCCC
T ss_pred CceEecCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCcccc-ccchhhhhhhhh
Confidence 8899999999 9999999999999999998764321 2223457999999986542 233333677764
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=98.29 E-value=1.2e-06 Score=85.94 Aligned_cols=26 Identities=15% Similarity=0.443 Sum_probs=24.6
Q ss_pred eeCCCEEEEEcCCCchHHHHHHHHHh
Q 047286 90 VPSGTTVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 90 i~~Ge~~~ivG~sGsGKSTLl~ll~~ 115 (632)
+++|++++|+||||||||||++.+++
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHH
Confidence 89999999999999999999998875
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=98.27 E-value=2.8e-07 Score=93.11 Aligned_cols=27 Identities=33% Similarity=0.454 Sum_probs=24.6
Q ss_pred EeeCCCEEEEEcCCCchHHHHHHHHHh
Q 047286 89 HVPSGTTVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 89 ~i~~Ge~~~ivG~sGsGKSTLl~ll~~ 115 (632)
.+++|++++|+||||||||||++.+.+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999999998763
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=6.2e-07 Score=93.47 Aligned_cols=126 Identities=17% Similarity=0.169 Sum_probs=64.1
Q ss_pred EeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHHhhcceEEEcccCccccc-cccc-ccccccCCCCCCHHHHHHHHHH
Q 047286 89 HVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQEKIGLVSKEPIFLFC-DFNE-GQYIPYGKQNASDEHIRPAVQL 166 (632)
Q Consensus 89 ~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~~r~~i~~v~Q~~~~~~~-~~~~-~~~i~~~~~~~~~~~~~~~~~~ 166 (632)
...+|++++|+||||||||||++++.+. .++.. ...+-.+ .+|.-+.. .... ......+....+ +.+++..
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~--~~~~~-~~~i~t~-ed~~e~~~~~~~~~v~q~~~~~~~~~---~~~~La~ 191 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDY--LNNTK-YHHILTI-EDPIEFVHESKKCLVNQREVHRDTLG---FSEALRS 191 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHH--HHHHC-CCEEEEE-ESSCCSCCCCSSSEEEEEEBTTTBSC---HHHHHHH
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhc--ccCCC-CcEEEEc-cCcHHhhhhccccceeeeeeccccCC---HHHHHHH
Confidence 3568889999999999999999998743 22210 1222222 22221110 0000 000011111111 1223322
Q ss_pred ccchhhHhhCCcccccccccCCCCHHHHHHHHHHHHHHhCCceEEEEecCchHHhhcCeEEEEeCC
Q 047286 167 ANAEKSIDKLPLGLDTVVATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRNADCIIMVSKG 232 (632)
Q Consensus 167 ~~l~~~i~~l~~g~~~~v~ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~aD~i~vl~~G 232 (632)
+-. .-| +-.+.----|+++.+.+.++ ...|.|+++++|+.+.+..+||++.|..|
T Consensus 192 aL~-----~~P---dvillDEp~d~e~~~~~~~~---~~~G~~vl~t~H~~~~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 192 ALR-----EDP---DIILVGEMRDLETIRLALTA---AETGHLVFGTLHTTSAAKTIDRVVDVFPA 246 (356)
T ss_dssp HTT-----SCC---SEEEESCCCSHHHHHHHHHH---HHTTCEEEEEESCSSHHHHHHHHHHTSCH
T ss_pred Hhh-----hCc---CEEecCCCCCHHHHHHHHHH---HhcCCEEEEEEccChHHHHHHHHhhhcCc
Confidence 211 111 11111111266665444333 34589999999999998889999888554
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=98.23 E-value=7.3e-07 Score=92.52 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=23.8
Q ss_pred EEEEEecCCCChHHHHHhhhcCCC-hh
Q 047286 507 TVALVGENGNGKSTVISLAERFHN-PE 532 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y~-~~ 532 (632)
+++|+||||||||||+++|.++.. +.
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~~~~ 243 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQNEIL 243 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSSCCC
T ss_pred EEEEECCCCccHHHHHHHHhccccccc
Confidence 679999999999999999999987 64
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=3.5e-07 Score=96.98 Aligned_cols=27 Identities=41% Similarity=0.617 Sum_probs=24.9
Q ss_pred EEEEEecCCCChHHHHHhhhcCCChhh
Q 047286 507 TVALVGENGNGKSTVISLAERFHNPEQ 533 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y~~~~ 533 (632)
.+||+||||||||||+++|.|++.|++
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~p~~ 97 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGNEEE 97 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTST
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCccC
Confidence 679999999999999999999988754
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=1.3e-06 Score=89.18 Aligned_cols=122 Identities=18% Similarity=0.142 Sum_probs=60.0
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC------------cHHhhcceEEEcccCcccccccccccccccCCC
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA------------PEAEQEKIGLVSKEPIFLFCDFNEGQYIPYGKQ 153 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~------------~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~ 153 (632)
++|+| +|+||||+|||||++.|.+..... +......+++++|++... ..++..++..++..
T Consensus 17 ~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~-~~ltv~Dt~g~~~~ 89 (301)
T 2qnr_A 17 FEFTL------MVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVK-LRLTVVDTPGYGDA 89 (301)
T ss_dssp -CEEE------EEEEETTSSHHHHHHHHHC------------------------CEEEEC---CC-EEEEEEEEC-----
T ss_pred CCEEE------EEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcc-cCcchhhhhhhhhh
Confidence 66766 999999999999999987541111 111134578888875432 12222223333321
Q ss_pred CCCHHHHHHHHHH--ccchhhHhhCCcccccccc-------------cC-CCCHHHHHHHHHHHHHHhC--CceEEEEec
Q 047286 154 NASDEHIRPAVQL--ANAEKSIDKLPLGLDTVVA-------------TN-AVDAQSERIVQAAMVKLVT--NQTVVIVAN 215 (632)
Q Consensus 154 ~~~~~~~~~~~~~--~~l~~~i~~l~~g~~~~v~-------------ts-~LD~~~~~~i~~~l~~~~~--~~tviiitH 215 (632)
....++.....+. ...+..+..+++|+++++. |+ +||+... +.++++.+ +.++|+.+|
T Consensus 90 ~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~ 165 (301)
T 2qnr_A 90 INCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKA 165 (301)
T ss_dssp ------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCG
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeC
Confidence 1001111111111 1123567778888765552 55 5999863 44555543 467888889
Q ss_pred Cch
Q 047286 216 CLI 218 (632)
Q Consensus 216 ~~~ 218 (632)
|+.
T Consensus 166 Dl~ 168 (301)
T 2qnr_A 166 DTL 168 (301)
T ss_dssp GGS
T ss_pred CCC
Confidence 874
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.17 E-value=2.3e-06 Score=80.15 Aligned_cols=116 Identities=15% Similarity=0.102 Sum_probs=67.8
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcH---------------------HhhcceEEEcccCcccc-c--
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPE---------------------AEQEKIGLVSKEPIFLF-C-- 140 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~---------------------~~r~~i~~v~Q~~~~~~-~-- 140 (632)
.+++++.+| +++|+||||||||||+++|......... ..+..|.+++|++..-. .
T Consensus 19 ~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~ 97 (182)
T 3kta_A 19 KVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPIDE 97 (182)
T ss_dssp CEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTCCSSSSS
T ss_pred cEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCCcccccCC
Confidence 488999999 9999999999999999988542111000 12345888888753210 0
Q ss_pred -cccccccc--------ccCCCCCCHHHHHHHHHHccchhh-HhhCCcccccccccCCCCHHHHHHHHHHHHH
Q 047286 141 -DFNEGQYI--------PYGKQNASDEHIRPAVQLANAEKS-IDKLPLGLDTVVATNAVDAQSERIVQAAMVK 203 (632)
Q Consensus 141 -~~~~~~~i--------~~~~~~~~~~~~~~~~~~~~l~~~-i~~l~~g~~~~v~ts~LD~~~~~~i~~~l~~ 203 (632)
.+.....+ .........+++.+.++..++... ..-++.|..+.+. .++|..++.+++.+..
T Consensus 98 ~~~~i~r~~~~~~~~~~~i~g~~~~~~~~~~~l~~~~l~~~~~~~~~qg~~~~l~--~~~~~~r~~~ld~~~g 168 (182)
T 3kta_A 98 DEVVIRRRVYPDGRSSYWLNGRRATRSEILDILTAAMISPDGYNIVLQGDITKFI--KMSPLERRLLIDDISG 168 (182)
T ss_dssp SEEEEEEEECTTSCEEEEETTEEECHHHHHHHHHHTTCCTTCTTEECTTCTTHHH--HSCHHHHHHHHHHHHT
T ss_pred cEEEEEEEEEeCCcEEEEECCeEcCHHHHHHHHHHcCCCCCCCEEEEcccHHHHH--hCCHHHHHHHHHHHHC
Confidence 11110001 111112356777888877766532 3345555554432 3678888877776644
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=98.13 E-value=1.6e-06 Score=90.83 Aligned_cols=73 Identities=16% Similarity=0.158 Sum_probs=57.9
Q ss_pred eEEEEEecCCCChHHHHHhhhcCCChhh----------------------hc-H------------HHHH----------
Q 047286 506 HTVALVGENGNGKSTVISLAERFHNPEQ----------------------VI-Y------------SWII---------- 540 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r~y~~~~----------------------~~-~------------~~~~---------- 540 (632)
+.++|+||||||||||+++|.|+|+|++ +. . ...+
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~ 255 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTR 255 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSCCSE
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCCE
Confidence 3679999999999999999999998743 00 0 0001
Q ss_pred --------HHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHH
Q 047286 541 --------IKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRA 578 (632)
Q Consensus 541 --------~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA 578 (632)
..+.+++..+|.|++|.+++-+.+-..+..+|+.....
T Consensus 256 ~l~~e~r~~~~~~~l~~l~~g~~~~l~t~H~~~~~~~~~Rl~~l~~ 301 (361)
T 2gza_A 256 ILLAELRGGEAYDFINVAASGHGGSITSCHAGSCELTFERLALMVL 301 (361)
T ss_dssp EEESCCCSTHHHHHHHHHHTTCCSCEEEEECSSHHHHHHHHHHHHT
T ss_pred EEEcCchHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHHHHh
Confidence 14568999999999999999888888999999988765
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.12 E-value=6.3e-07 Score=87.73 Aligned_cols=32 Identities=28% Similarity=0.223 Sum_probs=22.6
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHH-hC
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVE-SF 116 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~-~~ 116 (632)
.+||++++|++++|+||||||||||+++|. +.
T Consensus 19 ~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 19 PGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp ---CCEECCCEEEEECSCC----CHHHHHHC--
T ss_pred CCCcccCCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 389999999999999999999999999998 65
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.10 E-value=2.2e-06 Score=87.50 Aligned_cols=49 Identities=24% Similarity=0.272 Sum_probs=35.8
Q ss_pred EEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcH-----------------Hhh-cceEEEcccCcc
Q 047286 88 QHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPE-----------------AEQ-EKIGLVSKEPIF 137 (632)
Q Consensus 88 ~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~-----------------~~r-~~i~~v~Q~~~~ 137 (632)
+++.+|++++|+||||||||||+|+|. ....... ..+ ..+||++|+|.+
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~ 226 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGF 226 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCC
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCc
Confidence 345689999999999999999999997 4321100 011 258999999964
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=98.09 E-value=9.6e-07 Score=83.44 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=21.5
Q ss_pred eEEEEEecCCCChHHHHHhhhcCC
Q 047286 506 HTVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
..++|+||+||||||++++|.+.+
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTCS
T ss_pred eEEEEECCCCCCHHHHHHHHHhcc
Confidence 367999999999999999998864
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=98.08 E-value=3.8e-08 Score=107.56 Aligned_cols=31 Identities=26% Similarity=0.457 Sum_probs=27.5
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhC
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESF 116 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~ 116 (632)
+++.+++|+.++|+||||||||||+++|.++
T Consensus 253 l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 253 LWLAIEHKFSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp HHHHHHTTCCEEEEESTTSSHHHHHHHHGGG
T ss_pred HHHHHhCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 5566789999999999999999999999854
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=4.8e-06 Score=84.66 Aligned_cols=35 Identities=14% Similarity=0.051 Sum_probs=28.5
Q ss_pred ccccEEEeeEEEEEecCCCChHHHHHhhhcCCChh
Q 047286 498 VRGDIVFEHTVALVGENGNGKSTVISLAERFHNPE 532 (632)
Q Consensus 498 ~~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~ 532 (632)
+.+.+.-++.++|+||+|||||||++.|.+...++
T Consensus 28 i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~ 62 (296)
T 1cr0_A 28 KTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA 62 (296)
T ss_dssp HHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred HhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 34567777789999999999999999888876543
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=4.7e-06 Score=88.12 Aligned_cols=25 Identities=28% Similarity=0.468 Sum_probs=23.0
Q ss_pred EeeCCCEEEEEcCCCchHHHHHHHH
Q 047286 89 HVPSGTTVALVGQSGSGKSTVINLV 113 (632)
Q Consensus 89 ~i~~Ge~~~ivG~sGsGKSTLl~ll 113 (632)
-|++|+++.|+||||||||||++.+
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~l 198 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTL 198 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHH
Confidence 3899999999999999999999955
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=98.06 E-value=3.4e-06 Score=76.33 Aligned_cols=53 Identities=19% Similarity=0.002 Sum_probs=40.6
Q ss_pred ccCccc-----ccCCCCCChHHHHHHHHH------HHHhh------------------------------------hccc
Q 047286 553 GSDLNV-----GERGLQLSGGLKQRIART------RARNY------------------------------------CGCG 585 (632)
Q Consensus 553 g~dt~v-----ge~G~~LSgGQrQRiaiA------RA~~~------------------------------------~~ia 585 (632)
+|++.+ .....+||||||||++|| ||+.. +++|
T Consensus 41 ~~~l~~~~~~~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivs 120 (148)
T 1f2t_B 41 KVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVS 120 (148)
T ss_dssp SEEEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEE
T ss_pred ceEEEeccccccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEE
Confidence 666665 234578999999999876 77443 6789
Q ss_pred cchhhhhcCCEEEEE--eCCeE
Q 047286 586 SPPYHYKNADITSVV--KNGVI 605 (632)
Q Consensus 586 hrl~~~~~aD~I~vl--~~G~i 605 (632)
|.....+.||+|++| ++|..
T Consensus 121 H~~~~~~~~d~ii~l~~~~g~s 142 (148)
T 1f2t_B 121 HDEELKDAADHVIRISLENGSS 142 (148)
T ss_dssp SCGGGGGGCSEEEEEEEETTEE
T ss_pred ChHHHHHhCCEEEEEEcCCCeE
Confidence 998777889999999 55643
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=98.06 E-value=1e-06 Score=84.81 Aligned_cols=46 Identities=30% Similarity=0.349 Sum_probs=34.9
Q ss_pred eeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHHhhcceEEEcccCcccc
Q 047286 90 VPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQEKIGLVSKEPIFLF 139 (632)
Q Consensus 90 i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~~r~~i~~v~Q~~~~~~ 139 (632)
.++|++++|+||||||||||+++|.+. +.+. ...+++++++...+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~--~~~~--g~~~g~v~~d~~~~~ 64 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAA--LSAQ--GLPAEVVPMDGFHLD 64 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHH--HHHT--TCCEEEEESGGGBCC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH--Hhhc--CCceEEEecCCCcCC
Confidence 467999999999999999999999843 2211 135899999876443
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=3.4e-06 Score=78.91 Aligned_cols=33 Identities=6% Similarity=0.148 Sum_probs=27.0
Q ss_pred cCCCCHHHHHHHHHHHHHHh-CCceEEEEecCch
Q 047286 186 TNAVDAQSERIVQAAMVKLV-TNQTVVIVANCLI 218 (632)
Q Consensus 186 ts~LD~~~~~~i~~~l~~~~-~~~tviiitH~~~ 218 (632)
+.++|+..++.+.+.+.... +++++|++||...
T Consensus 111 ~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 111 SERLSDWQRELISYIITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCS
T ss_pred CCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCCh
Confidence 35899999999999888775 6789999998763
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.03 E-value=1.4e-06 Score=80.96 Aligned_cols=73 Identities=21% Similarity=0.284 Sum_probs=49.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCC----------------C--C---cHHhh-cceE----EEcccCcccccccccccc
Q 047286 94 TTVALVGQSGSGKSTVINLVESFRF----------------Y--A---PEAEQ-EKIG----LVSKEPIFLFCDFNEGQY 147 (632)
Q Consensus 94 e~~~ivG~sGsGKSTLl~ll~~~~~----------------~--~---~~~~r-~~i~----~v~Q~~~~~~~~~~~~~~ 147 (632)
++++|+|+||||||||+++|.++.. . + ...+| +.++ +++|++.+| +.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 6899999999999999998863200 1 1 23455 3577 778877655 111
Q ss_pred cccCCCCCCHHHHHHHHHHccchhhHhh-CCccccccccc
Q 047286 148 IPYGKQNASDEHIRPAVQLANAEKSIDK-LPLGLDTVVAT 186 (632)
Q Consensus 148 i~~~~~~~~~~~~~~~~~~~~l~~~i~~-l~~g~~~~v~t 186 (632)
+ ..+ . .+++++++.. +| |+++.+..
T Consensus 77 ---~----~~~-~-----~a~l~~~i~~~l~-g~dt~i~E 102 (171)
T 2f1r_A 77 ---V----SEE-E-----GNDLDWIYERYLS-DYDLVITE 102 (171)
T ss_dssp ---C----CHH-H-----HTCHHHHHHHHTT-TCSEEEEE
T ss_pred ---C----Chh-h-----hhCHHHHHHhhCC-CCCEEEEC
Confidence 1 111 1 5678888888 99 89998865
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=7e-07 Score=103.80 Aligned_cols=99 Identities=16% Similarity=0.002 Sum_probs=62.5
Q ss_pred eEEEEEecCCCChHHHHHhh--------hcCCChhhhcHHHHHHHHHHHHhcCCCccCcccccC---CCCCChHHHHHHH
Q 047286 506 HTVALVGENGNGKSTVISLA--------ERFHNPEQVIYSWIIIKCTNFIASLPQGSDLNVGER---GLQLSGGLKQRIA 574 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll--------~r~y~~~~~~~~~~~~~~~~~i~~lp~g~dt~vge~---G~~LSgGQrQRia 574 (632)
+.++|+||+||||||+++.+ .|.|-|.+... ...-+.+-+.+|-. -..+|+|++|+..
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-----------~~~~d~i~~~ig~~d~l~~~lStf~~e~~~ 731 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-----------VSIVDCILARVGAGDSQLKGVSTFMAEMLE 731 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE-----------EECCSEEEEECC---------CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc-----------chHHHHHHHhcCchhhHHHhHhhhHHHHHH
Confidence 48999999999999999998 55554432000 00001111222211 1245666666555
Q ss_pred HHHHHhh----------------------------------------hccccchhhhhcCCEEEEEeCCeEeeecChHHH
Q 047286 575 RTRARNY----------------------------------------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDAL 614 (632)
Q Consensus 575 iARA~~~----------------------------------------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL 614 (632)
+|+++-. +++||.....+.||++..+++|++...|+.+++
T Consensus 732 ~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 732 TASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETL 811 (934)
T ss_dssp HHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTEE
T ss_pred HHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCcE
Confidence 5555310 678999888889999999999999988877765
Q ss_pred h
Q 047286 615 M 615 (632)
Q Consensus 615 ~ 615 (632)
.
T Consensus 812 ~ 812 (934)
T 3thx_A 812 T 812 (934)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.02 E-value=3.8e-06 Score=89.26 Aligned_cols=58 Identities=31% Similarity=0.410 Sum_probs=32.7
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcH-----------HhhcceEEEcccCccc-ccccccccccccC
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPE-----------AEQEKIGLVSKEPIFL-FCDFNEGQYIPYG 151 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~-----------~~r~~i~~v~Q~~~~~-~~~~~~~~~i~~~ 151 (632)
++|+| +|+||||||||||+++|.+...+.+. ..+..+++++|++.++ ..++.+ +..++
T Consensus 30 vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~D--t~g~~ 99 (418)
T 2qag_C 30 FEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVD--TPGFG 99 (418)
T ss_dssp CCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEE--CC---
T ss_pred CCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeee--chhhh
Confidence 77776 99999999999999999876542111 1124578888876543 223333 55554
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=98.00 E-value=3.9e-06 Score=78.03 Aligned_cols=45 Identities=24% Similarity=0.058 Sum_probs=37.3
Q ss_pred CCCCChHHHHHHHHHHHHhh---------------------------------------hccccchhhhhcCCEEEEE--
Q 047286 562 GLQLSGGLKQRIARTRARNY---------------------------------------CGCGSPPYHYKNADITSVV-- 600 (632)
Q Consensus 562 G~~LSgGQrQRiaiARA~~~---------------------------------------~~iahrl~~~~~aD~I~vl-- 600 (632)
..+||||||||++||||+.. +++||+..++..||+|+.+
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~v~~ 141 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVSM 141 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEEEEEEe
Confidence 35799999999999999741 7889999999999999855
Q ss_pred eCCeEe
Q 047286 601 KNGVIA 606 (632)
Q Consensus 601 ~~G~iv 606 (632)
++|...
T Consensus 142 ~~g~s~ 147 (173)
T 3kta_B 142 RDGVSK 147 (173)
T ss_dssp ETTEEE
T ss_pred cCCEEE
Confidence 577543
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=97.99 E-value=1.6e-06 Score=89.39 Aligned_cols=50 Identities=12% Similarity=0.009 Sum_probs=34.4
Q ss_pred cCCCCHHHHHHHHHHHHHHh--CCceEEEEecCchH---------Hh-hcCeEEEEeCCeEE
Q 047286 186 TNAVDAQSERIVQAAMVKLV--TNQTVVIVANCLIT---------IR-NADCIIMVSKGKIV 235 (632)
Q Consensus 186 ts~LD~~~~~~i~~~l~~~~--~~~tviiitH~~~~---------~~-~aD~i~vl~~G~i~ 235 (632)
+..||+.+.+.+.+.++.+. .+.|.|++||.... +. ..-.|.++..|+-+
T Consensus 246 llvLDa~t~~~~~~~~~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v 307 (328)
T 3e70_C 246 IFVGDALAGNAIVEQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY 307 (328)
T ss_dssp EEEEEGGGTTHHHHHHHHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred EEEEecHHHHHHHHHHHHHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCc
Confidence 45677777777777777765 37899999995532 11 24578888888754
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=97.97 E-value=2.1e-06 Score=89.04 Aligned_cols=109 Identities=17% Similarity=0.148 Sum_probs=62.5
Q ss_pred eCCCEEEEEcCCCchHHHHHHHHHhCCC-CCc------------HHhhcceEEEcccCcccccccccccccccCCCCCCH
Q 047286 91 PSGTTVALVGQSGSGKSTVINLVESFRF-YAP------------EAEQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASD 157 (632)
Q Consensus 91 ~~Ge~~~ivG~sGsGKSTLl~ll~~~~~-~~~------------~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~ 157 (632)
.+|++++|+||||||||||+|+|.+... ... ...+..+++++|++.++ .+....++ +......
T Consensus 213 ~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~-dtpgv~e~---~l~~l~~ 288 (358)
T 2rcn_A 213 LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVI-DSPGVREF---GLWHLEP 288 (358)
T ss_dssp HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEE-ECHHHHTC---CCCCCCH
T ss_pred cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEec-CcccHHHh---hhcCCCH
Confidence 4899999999999999999999986543 211 11234689999987654 33322212 1112333
Q ss_pred HHH----HHHHHHccchhh----HhhCCcccccccc-cCCCCHHHHHHH-HHHHHHH
Q 047286 158 EHI----RPAVQLANAEKS----IDKLPLGLDTVVA-TNAVDAQSERIV-QAAMVKL 204 (632)
Q Consensus 158 ~~~----~~~~~~~~l~~~----i~~l~~g~~~~v~-ts~LD~~~~~~i-~~~l~~~ 204 (632)
+++ .++++..++.++ ...+| |...+++ ..++++..+... .+.+.++
T Consensus 289 ~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gli~~~R~~~y~~l~~e~ 344 (358)
T 2rcn_A 289 EQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGAIAETRFENYHRILESM 344 (358)
T ss_dssp HHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 333 234444444333 34667 7776665 345555555444 4444544
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=97.93 E-value=1.7e-05 Score=78.63 Aligned_cols=24 Identities=25% Similarity=0.457 Sum_probs=22.9
Q ss_pred eCCCEEEEEcCCCchHHHHHHHHH
Q 047286 91 PSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 91 ~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
++|++++|+|||||||||++++|.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 689999999999999999999997
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=97.90 E-value=1.3e-06 Score=89.84 Aligned_cols=46 Identities=13% Similarity=0.208 Sum_probs=30.5
Q ss_pred HhhCCcccccccc-----cCCCCHHHH-HHHHHHHHHHhCCceEEEEecCch
Q 047286 173 IDKLPLGLDTVVA-----TNAVDAQSE-RIVQAAMVKLVTNQTVVIVANCLI 218 (632)
Q Consensus 173 i~~l~~g~~~~v~-----ts~LD~~~~-~~i~~~l~~~~~~~tviiitH~~~ 218 (632)
...+|.|.++++. .+..|...+ +.+.+.++++..+.|++++||+..
T Consensus 139 ~~~ls~g~~Q~~~ad~ill~k~dl~de~~~l~~~l~~l~~~~~ii~~sh~~~ 190 (318)
T 1nij_A 139 MNQFTIAQSQVGYADRILLTKTDVAGEAEKLHERLARINARAPVYTVTHGDI 190 (318)
T ss_dssp HHHCHHHHHHHHTCSEEEEECTTTCSCTHHHHHHHHHHCSSSCEEECCSSCC
T ss_pred HhhchHHHHHHHhCCEEEEECcccCCHHHHHHHHHHHhCCCCeEEEecccCC
Confidence 3456777766543 123333333 788888888877889999999753
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=1.6e-07 Score=97.95 Aligned_cols=26 Identities=31% Similarity=0.465 Sum_probs=24.3
Q ss_pred EEEEEecCCCChHHHHHhhhcCCChh
Q 047286 507 TVALVGENGNGKSTVISLAERFHNPE 532 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y~~~ 532 (632)
.++|+|||||||||++++|.++++|+
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~~~ 150 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLNNT 150 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhcccCC
Confidence 68999999999999999999998875
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.86 E-value=1.7e-05 Score=82.59 Aligned_cols=114 Identities=15% Similarity=0.164 Sum_probs=59.9
Q ss_pred EEEEcCCCchHHHHHHHHHh-CCCCC-------------cHHhhcceEEEcccCcccccccccccccccCCCCCCHHHHH
Q 047286 96 VALVGQSGSGKSTVINLVES-FRFYA-------------PEAEQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIR 161 (632)
Q Consensus 96 ~~ivG~sGsGKSTLl~ll~~-~~~~~-------------~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 161 (632)
+.|.||||+||||+++++.+ +.... +...+..+++++|.+.+.... . ..+ ......++
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~--~~~~~~~~ 110 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITP-S-----DMG--NNDRIVIQ 110 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECC-C-----------CCHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecH-h-----hcC--CcchHHHH
Confidence 89999999999999998875 21111 112245577777766431110 0 001 11122334
Q ss_pred HHHHHc----cchhhHhhCCc---cccccc---ccCCCCHHHHHHHHHHHHHHhCCceEEEEecCchH
Q 047286 162 PAVQLA----NAEKSIDKLPL---GLDTVV---ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLIT 219 (632)
Q Consensus 162 ~~~~~~----~l~~~i~~l~~---g~~~~v---~ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~ 219 (632)
+.++.. .+.+++ .+|+ +.+..+ +++ ||+.+...+.+.+.+..++.++|++||++..
T Consensus 111 ~~i~~~~~~~~~~~~~-~ls~l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 111 ELLKEVAQMEQVDFQD-SKDGLAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSP 176 (354)
T ss_dssp HHHHHHTTTTC-------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCS
T ss_pred HHHHHHHHhccccccc-cccccCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCHHH
Confidence 433332 222211 2232 222222 244 9999999999999987777899999998754
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=6.8e-06 Score=88.53 Aligned_cols=31 Identities=23% Similarity=0.201 Sum_probs=29.0
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhC
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESF 116 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~ 116 (632)
.++|+|++ ++++|+||||||||||+++|.|+
T Consensus 22 ~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 22 ARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp EEEEECCS-SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEcc-ceEEEECCCCCcHHHHHHHHhcC
Confidence 38999999 99999999999999999999865
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.85 E-value=9.2e-06 Score=84.58 Aligned_cols=49 Identities=14% Similarity=0.026 Sum_probs=42.7
Q ss_pred CCChHHHHHHHHHHHHh---------h---------------------------------hccccchhhhhcCCEEEEEe
Q 047286 564 QLSGGLKQRIARTRARN---------Y---------------------------------CGCGSPPYHYKNADITSVVK 601 (632)
Q Consensus 564 ~LSgGQrQRiaiARA~~---------~---------------------------------~~iahrl~~~~~aD~I~vl~ 601 (632)
.||||||||++|||++. . +++|| +.. .||+|++|+
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th-~~~--~~~~i~~l~ 341 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTE-LAP--GAALTLRAQ 341 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESS-CCT--TCSEEEEEE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEe-ccc--cCCEEEEEE
Confidence 59999999999999976 2 56788 444 899999999
Q ss_pred CCeEeeecChHHHh
Q 047286 602 NGVIAEKGRHDALM 615 (632)
Q Consensus 602 ~G~ive~G~h~eL~ 615 (632)
+|+|++.|+++++.
T Consensus 342 ~G~i~~~g~~~~~~ 355 (359)
T 2o5v_A 342 AGRFTPVADEEMQA 355 (359)
T ss_dssp TTEEEECCCTTTSC
T ss_pred CCEEEecCCHHHHh
Confidence 99999999999884
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=1.2e-06 Score=90.94 Aligned_cols=30 Identities=33% Similarity=0.484 Sum_probs=27.6
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHh
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~ 115 (632)
+++++++|++++|+||||||||||+++|.+
T Consensus 48 i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 48 VLPQTGRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp HGGGCCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 667789999999999999999999999874
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=97.83 E-value=6.8e-06 Score=77.47 Aligned_cols=28 Identities=32% Similarity=0.523 Sum_probs=25.2
Q ss_pred EeeCCCEEEEEcCCCchHHHHHHHHHhC
Q 047286 89 HVPSGTTVALVGQSGSGKSTVINLVESF 116 (632)
Q Consensus 89 ~i~~Ge~~~ivG~sGsGKSTLl~ll~~~ 116 (632)
.+++|++++|+||||||||||+++|.+.
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4789999999999999999999999854
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=97.80 E-value=2.3e-05 Score=70.89 Aligned_cols=50 Identities=20% Similarity=0.248 Sum_probs=42.7
Q ss_pred ccCCCCHHHHHHHHHHHHHHh-CCceEEEEecCchHHhhcCeEEEE--eCCeE
Q 047286 185 ATNAVDAQSERIVQAAMVKLV-TNQTVVIVANCLITIRNADCIIMV--SKGKI 234 (632)
Q Consensus 185 ~ts~LD~~~~~~i~~~l~~~~-~~~tviiitH~~~~~~~aD~i~vl--~~G~i 234 (632)
+|++||+.+++.+.+.+.++. +++|+|++||+......||++++| ++|..
T Consensus 90 Pt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~d~ii~l~~~~g~s 142 (148)
T 1f2t_B 90 PTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRISLENGSS 142 (148)
T ss_dssp CSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEEEEEEETTEE
T ss_pred CCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHHHHHhCCEEEEEEcCCCeE
Confidence 499999999999999999985 478999999999655679999999 45643
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=97.79 E-value=2.1e-05 Score=71.30 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=22.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHh
Q 047286 92 SGTTVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 92 ~Ge~~~ivG~sGsGKSTLl~ll~~ 115 (632)
+|+.++|+||||||||||++++.+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999999974
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.78 E-value=1.1e-05 Score=77.05 Aligned_cols=29 Identities=31% Similarity=0.328 Sum_probs=24.4
Q ss_pred EEeeCCCEEEEEcCCCchHHHHHHHHHhC
Q 047286 88 QHVPSGTTVALVGQSGSGKSTVINLVESF 116 (632)
Q Consensus 88 ~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~ 116 (632)
+++++|++++|+|||||||||++++|.+.
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 36889999999999999999999999854
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=1.4e-05 Score=81.11 Aligned_cols=131 Identities=14% Similarity=0.185 Sum_probs=73.3
Q ss_pred eCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHHhhcceEEEcccCccccccccc-------ccccccCCCCCCHHHHHHH
Q 047286 91 PSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQEKIGLVSKEPIFLFCDFNE-------GQYIPYGKQNASDEHIRPA 163 (632)
Q Consensus 91 ~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~~r~~i~~v~Q~~~~~~~~~~~-------~~~i~~~~~~~~~~~~~~~ 163 (632)
++|++++++|||||||||+++.|.+. +.+. ..+++.++.+++. .....+ ..++... ...+..++..+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~--l~~~-~G~~V~lv~~D~~--r~~a~eqL~~~~~~~gl~~~-~~~~~~~l~~a 176 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAI--SMLE-KHKKIAFITTDTY--RIAAVEQLKTYAELLQAPLE-VCYTKEEFQQA 176 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHH--HHHT-TCCCEEEEECCCS--STTHHHHHHHHHTTTTCCCC-BCSSHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH--HHHh-cCCEEEEEecCcc--cchHHHHHHHHHHhcCCCeE-ecCCHHHHHHH
Confidence 57999999999999999999988632 1110 1236899988873 111110 0011110 01123333322
Q ss_pred HHHccchhhHhhCCccccccc-ccCCCCHHHHHHHHHHHHHHh---CCceEEEE--ecCchHHhh-cCeEEEEeCCeEEE
Q 047286 164 VQLANAEKSIDKLPLGLDTVV-ATNAVDAQSERIVQAAMVKLV---TNQTVVIV--ANCLITIRN-ADCIIMVSKGKIVE 236 (632)
Q Consensus 164 ~~~~~l~~~i~~l~~g~~~~v-~ts~LD~~~~~~i~~~l~~~~---~~~tviii--tH~~~~~~~-aD~i~vl~~G~i~~ 236 (632)
+. .+ .+.+..+ -|+++|+.....+.+..+-+. ...+++++ +|....+.. ++++..++.+.++.
T Consensus 177 l~---------~~-~~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 177 KE---------LF-SEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp HH---------HG-GGSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred HH---------Hh-cCCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 22 22 2334333 388999876665555443332 22344554 788776655 78776677777775
Q ss_pred e
Q 047286 237 K 237 (632)
Q Consensus 237 ~ 237 (632)
.
T Consensus 247 t 247 (296)
T 2px0_A 247 T 247 (296)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=97.75 E-value=8.5e-06 Score=78.18 Aligned_cols=30 Identities=27% Similarity=0.256 Sum_probs=24.5
Q ss_pred cEEEeeEEEEEecCCCChHHHHHhhhcCCC
Q 047286 501 DIVFEHTVALVGENGNGKSTVISLAERFHN 530 (632)
Q Consensus 501 ~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~ 530 (632)
+|.-++++||+||||||||||+++|.+++.
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 456666889999999999999999999883
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.74 E-value=3.5e-05 Score=75.52 Aligned_cols=24 Identities=29% Similarity=0.527 Sum_probs=21.6
Q ss_pred eeCCCEEEEEcCCCchHHHHHHHH
Q 047286 90 VPSGTTVALVGQSGSGKSTVINLV 113 (632)
Q Consensus 90 i~~Ge~~~ivG~sGsGKSTLl~ll 113 (632)
+++|+++.|.||||||||||+..+
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~ 43 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQF 43 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHH
Confidence 899999999999999999996533
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.73 E-value=1.5e-05 Score=74.64 Aligned_cols=25 Identities=24% Similarity=0.421 Sum_probs=22.9
Q ss_pred eCCCEEEEEcCCCchHHHHHHHHHh
Q 047286 91 PSGTTVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 91 ~~Ge~~~ivG~sGsGKSTLl~ll~~ 115 (632)
.+|++++|+||||||||||+++|.+
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999999999974
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.71 E-value=1.6e-06 Score=87.89 Aligned_cols=49 Identities=20% Similarity=0.237 Sum_probs=34.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCCcHH-hhcceEEEcccCccccccc
Q 047286 92 SGTTVALVGQSGSGKSTVINLVESFRFYAPEA-EQEKIGLVSKEPIFLFCDF 142 (632)
Q Consensus 92 ~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~-~r~~i~~v~Q~~~~~~~~~ 142 (632)
++.+++|+||+|||||||+++|.+ .+.+.. .++.+.+|+|+++++..+.
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~--~l~~~g~~~~~~~iv~~D~f~~~~~~ 79 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYN--HLMEKYGGEKSIGYASIDDFYLTHED 79 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH--HHHHHHGGGSCEEEEEGGGGBCCHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HhhhcCCCCceEEEeccccccCChHH
Confidence 568999999999999999999863 222211 1334566699987665443
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.69 E-value=6.5e-06 Score=83.70 Aligned_cols=29 Identities=31% Similarity=0.391 Sum_probs=25.4
Q ss_pred EEeeCCCEEEEEcCCCchHHHHHHHHHhC
Q 047286 88 QHVPSGTTVALVGQSGSGKSTVINLVESF 116 (632)
Q Consensus 88 ~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~ 116 (632)
+++.+|++++|+||||||||||+|+|.+.
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccc
Confidence 45779999999999999999999999643
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.68 E-value=1.1e-05 Score=76.93 Aligned_cols=25 Identities=36% Similarity=0.494 Sum_probs=22.8
Q ss_pred eEEEEEecCCCChHHHHHhhhcCCC
Q 047286 506 HTVALVGENGNGKSTVISLAERFHN 530 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r~y~ 530 (632)
..++||||||||||||+++|.|+|+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4679999999999999999999875
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=97.66 E-value=3.3e-06 Score=88.85 Aligned_cols=52 Identities=12% Similarity=0.086 Sum_probs=35.4
Q ss_pred CCCCHHHHHHHHHHHHHH-hC-CceEEEEecCchHHhh-cCeEE-EEeCC-eEEEecCh
Q 047286 187 NAVDAQSERIVQAAMVKL-VT-NQTVVIVANCLITIRN-ADCII-MVSKG-KIVEKGTH 240 (632)
Q Consensus 187 s~LD~~~~~~i~~~l~~~-~~-~~tviiitH~~~~~~~-aD~i~-vl~~G-~i~~~g~~ 240 (632)
..+|+...+..++.+.+. .+ +.|+ ++|.+..+.. ||++. +|++| +++..|+.
T Consensus 152 ~~~D~~~~~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~ 208 (392)
T 1ni3_A 152 LIKDAEFVEKHLEGLRKITSRGANTL--EMKAKKEEQAIIEKVYQYLTETKQPIRKGDW 208 (392)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHHHHhccCCceeecCCC
Confidence 444555555566666665 44 4454 3999877755 99999 99999 88766653
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=97.65 E-value=1.1e-05 Score=77.50 Aligned_cols=31 Identities=19% Similarity=0.140 Sum_probs=26.4
Q ss_pred EEEeeEEEEEecCCCChHHHHHhhhcCCChhh
Q 047286 502 IVFEHTVALVGENGNGKSTVISLAERFHNPEQ 533 (632)
Q Consensus 502 I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~ 533 (632)
|.-++++||+||||||||||+++|.|+ .|++
T Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~ 49 (208)
T 3b85_A 19 IDTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQS 49 (208)
T ss_dssp HHHCSEEEEECCTTSSTTHHHHHHHHH-HHHT
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcC-CCcC
Confidence 444557899999999999999999999 7764
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.65 E-value=1.2e-05 Score=80.22 Aligned_cols=31 Identities=26% Similarity=0.279 Sum_probs=27.5
Q ss_pred EEEeeEEEEEecCCCChHHHHHhhhcCCChh
Q 047286 502 IVFEHTVALVGENGNGKSTVISLAERFHNPE 532 (632)
Q Consensus 502 I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~ 532 (632)
+.-++.++|+|||||||||++++|.|+++|+
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~ 52 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYINQT 52 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCCCC
Confidence 4455688999999999999999999999886
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=97.65 E-value=1.3e-05 Score=86.04 Aligned_cols=53 Identities=15% Similarity=0.221 Sum_probs=40.3
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCC-------------CCCc------HH--hhcceEEEcccCcc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFR-------------FYAP------EA--EQEKIGLVSKEPIF 137 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~-------------~~~~------~~--~r~~i~~v~Q~~~~ 137 (632)
.+||++++|++++|+|+||||||||+++|.++. .+.. .. .|+.++|++|++.+
T Consensus 285 ~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~ 358 (503)
T 2yhs_A 285 PLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGA 358 (503)
T ss_dssp CCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTC
T ss_pred CceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCc
Confidence 388899999999999999999999999986431 1111 11 25679999998654
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=3e-05 Score=74.19 Aligned_cols=43 Identities=16% Similarity=0.294 Sum_probs=35.5
Q ss_pred EeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHHhhcceEEEcccCcccc
Q 047286 89 HVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQEKIGLVSKEPIFLF 139 (632)
Q Consensus 89 ~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~~r~~i~~v~Q~~~~~~ 139 (632)
++++|++++|+|++||||||++++|.+ .+. .+.+++|++.++.
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~--~~~------~~~~i~~D~~~~~ 59 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQK--HLP------NCSVISQDDFFKP 59 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHT--TST------TEEEEEGGGGBCC
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHH--hcC------CcEEEeCCccccC
Confidence 478899999999999999999999973 221 4889999986553
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.62 E-value=3.2e-06 Score=82.19 Aligned_cols=29 Identities=24% Similarity=0.314 Sum_probs=25.3
Q ss_pred EEEeeCCCEEEEEcCCCchHHHHHHHHHhC
Q 047286 87 LQHVPSGTTVALVGQSGSGKSTVINLVESF 116 (632)
Q Consensus 87 ~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~ 116 (632)
++++++ ++++|+||||||||||+++|+++
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~ 50 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTA 50 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHH
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcc
Confidence 566777 89999999999999999999754
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.60 E-value=2.2e-05 Score=73.52 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=22.2
Q ss_pred EEEEEecCCCChHHHHHhhhcCCC
Q 047286 507 TVALVGENGNGKSTVISLAERFHN 530 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y~ 530 (632)
.++|+||||||||||+++|.++++
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 679999999999999999999875
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=97.58 E-value=1.5e-05 Score=73.05 Aligned_cols=27 Identities=30% Similarity=0.191 Sum_probs=24.0
Q ss_pred eEEEEEecCCCChHHHHHhhhcCCChhh
Q 047286 506 HTVALVGENGNGKSTVISLAERFHNPEQ 533 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r~y~~~~ 533 (632)
++++|+||+|||||||+++|.|+. |.+
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l-~~~ 60 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI-GHQ 60 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT-TCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC-CCC
Confidence 466999999999999999999998 644
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=97.54 E-value=3.9e-05 Score=73.06 Aligned_cols=27 Identities=33% Similarity=0.427 Sum_probs=22.7
Q ss_pred EeeCCCEEEEEcCCCchHHHHHHHHHh
Q 047286 89 HVPSGTTVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 89 ~i~~Ge~~~ivG~sGsGKSTLl~ll~~ 115 (632)
+.++|++++|+|||||||||++++|.+
T Consensus 25 ~~~~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 25 TGEPTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999999973
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=3e-05 Score=75.10 Aligned_cols=29 Identities=17% Similarity=0.163 Sum_probs=24.8
Q ss_pred EEeeEEEEEecCCCChHHHHHhhhcCCCh
Q 047286 503 VFEHTVALVGENGNGKSTVISLAERFHNP 531 (632)
Q Consensus 503 ~f~~~vaIVG~SGsGKSTL~~ll~r~y~~ 531 (632)
+-++.++|+||||||||||+++|.++++|
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~p 42 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQPL 42 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSCT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCCC
Confidence 34446799999999999999999999875
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.51 E-value=4.4e-05 Score=72.62 Aligned_cols=30 Identities=20% Similarity=0.259 Sum_probs=22.4
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHH
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
.+||++++|++++|+|++||||||+.+.|.
T Consensus 17 ~~~~~~~~~~~i~l~G~~GsGKsTl~~~La 46 (199)
T 3vaa_A 17 NLYFQSNAMVRIFLTGYMGAGKTTLGKAFA 46 (199)
T ss_dssp -------CCCEEEEECCTTSCHHHHHHHHH
T ss_pred ceeEecCCCCEEEEEcCCCCCHHHHHHHHH
Confidence 499999999999999999999999999986
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=2.8e-05 Score=74.53 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=22.7
Q ss_pred eEEEEEecCCCChHHHHHhhhcCCC
Q 047286 506 HTVALVGENGNGKSTVISLAERFHN 530 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r~y~ 530 (632)
.++||+||+|||||||+++|.+++.
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999999866
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.50 E-value=4.9e-05 Score=72.89 Aligned_cols=25 Identities=40% Similarity=0.490 Sum_probs=23.2
Q ss_pred eCCCEEEEEcCCCchHHHHHHHHHh
Q 047286 91 PSGTTVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 91 ~~Ge~~~ivG~sGsGKSTLl~ll~~ 115 (632)
++|++++|+||||||||||++.|.+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHh
Confidence 5799999999999999999999973
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.50 E-value=3.4e-05 Score=73.39 Aligned_cols=24 Identities=13% Similarity=0.278 Sum_probs=22.0
Q ss_pred eEEEEEecCCCChHHHHHhhhcCC
Q 047286 506 HTVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
+.+||+||||||||||+++|.+++
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 467999999999999999999976
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=97.44 E-value=8.1e-05 Score=83.26 Aligned_cols=24 Identities=29% Similarity=0.588 Sum_probs=21.5
Q ss_pred EEEEecCCCChHHHHHhhhcCCCh
Q 047286 508 VALVGENGNGKSTVISLAERFHNP 531 (632)
Q Consensus 508 vaIVG~SGsGKSTL~~ll~r~y~~ 531 (632)
+|||||||||||||+++|.|++.|
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P 71 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALP 71 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC--
T ss_pred EEEECCCCChHHHHHHHHhCCCCC
Confidence 799999999999999999999877
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=5.3e-05 Score=77.39 Aligned_cols=27 Identities=19% Similarity=0.329 Sum_probs=24.4
Q ss_pred eeCCCEEEEEcCCCchHHHHHHHHHhC
Q 047286 90 VPSGTTVALVGQSGSGKSTVINLVESF 116 (632)
Q Consensus 90 i~~Ge~~~ivG~sGsGKSTLl~ll~~~ 116 (632)
.++|++++|+||||||||||+++|.+.
T Consensus 77 ~~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 77 QRIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 467899999999999999999999853
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=6e-05 Score=71.71 Aligned_cols=27 Identities=33% Similarity=0.420 Sum_probs=24.3
Q ss_pred EeeCCCEEEEEcCCCchHHHHHHHHHh
Q 047286 89 HVPSGTTVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 89 ~i~~Ge~~~ivG~sGsGKSTLl~ll~~ 115 (632)
..++|++++|+|||||||||++++|.+
T Consensus 21 ~~~~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 21 LDQKGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp HTSCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999999973
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=97.42 E-value=6.8e-05 Score=79.55 Aligned_cols=50 Identities=20% Similarity=0.254 Sum_probs=38.7
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCC----CCcHHhhcceEEEcccC
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRF----YAPEAEQEKIGLVSKEP 135 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~----~~~~~~r~~i~~v~Q~~ 135 (632)
++|+++.|+.++|+|+||||||||+++|.+... ++...+...++++.++.
T Consensus 150 i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~ 203 (416)
T 1udx_A 150 LRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE 203 (416)
T ss_dssp EEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS
T ss_pred eeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC
Confidence 999999999999999999999999999975521 11122344578887764
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=97.42 E-value=4e-05 Score=74.68 Aligned_cols=29 Identities=21% Similarity=0.140 Sum_probs=18.7
Q ss_pred cEEEeeEEEEEecCCCChHHHHHhhh-cCC
Q 047286 501 DIVFEHTVALVGENGNGKSTVISLAE-RFH 529 (632)
Q Consensus 501 ~I~f~~~vaIVG~SGsGKSTL~~ll~-r~y 529 (632)
.+.-+..+||+||||||||||+++|. +++
T Consensus 23 ~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 23 LKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEECCCEEEEECSCC----CHHHHHHC---
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 34555688999999999999999999 887
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.39 E-value=7.9e-05 Score=70.54 Aligned_cols=29 Identities=28% Similarity=0.326 Sum_probs=23.6
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHH
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
-|+...+|++++|+||||||||||++.|.
T Consensus 12 ~~~~~~~g~~ivl~GPSGaGKsTL~~~L~ 40 (197)
T 3ney_A 12 ENLYFQGRKTLVLIGASGVGRSHIKNALL 40 (197)
T ss_dssp ----CCSCCEEEEECCTTSSHHHHHHHHH
T ss_pred ccCCCCCCCEEEEECcCCCCHHHHHHHHH
Confidence 34556689999999999999999999987
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=97.35 E-value=2.4e-05 Score=92.05 Aligned_cols=25 Identities=32% Similarity=0.328 Sum_probs=22.1
Q ss_pred eEEEEEecCCCChHHHHHhhhcCCCh
Q 047286 506 HTVALVGENGNGKSTVISLAERFHNP 531 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r~y~~ 531 (632)
+.++|+||+||||||+++.+ ++..+
T Consensus 790 ~i~~ItGpNgsGKSTlLr~i-Gl~~~ 814 (1022)
T 2o8b_B 790 YCVLVTGPNMGGKSTLMRQA-GLLAV 814 (1022)
T ss_dssp CEEEEECCTTSSHHHHHHHH-HHHHH
T ss_pred cEEEEECCCCCChHHHHHHH-HHHHH
Confidence 68999999999999999998 77543
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=7.4e-05 Score=72.36 Aligned_cols=31 Identities=23% Similarity=0.320 Sum_probs=27.3
Q ss_pred cccEEEeeEEEEEecCCCChHHHHHhhhcCC
Q 047286 499 RGDIVFEHTVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 499 ~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
.|.|.-++.++|+||||||||||+++|.+.+
T Consensus 19 ~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 19 GGGIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cCCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4678888899999999999999999998844
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00019 Score=66.62 Aligned_cols=50 Identities=18% Similarity=0.201 Sum_probs=43.6
Q ss_pred ccCCCCHHHHHHHHHHHHHHhCCceEEEEecCchHHhhcCeEEEE--eCCeE
Q 047286 185 ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRNADCIIMV--SKGKI 234 (632)
Q Consensus 185 ~ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~aD~i~vl--~~G~i 234 (632)
+|++||+.+++.+.+.|+++.++.++|++||+...+..||+++.+ ++|..
T Consensus 95 p~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~v~~~~g~s 146 (173)
T 3kta_B 95 IDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVSMRDGVS 146 (173)
T ss_dssp TTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEEEETTEE
T ss_pred CccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEEEEEEecCCEE
Confidence 489999999999999999988788999999999888889999865 46653
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=7.1e-05 Score=72.94 Aligned_cols=27 Identities=37% Similarity=0.487 Sum_probs=24.6
Q ss_pred eeCCCEEEEEcCCCchHHHHHHHHHhC
Q 047286 90 VPSGTTVALVGQSGSGKSTVINLVESF 116 (632)
Q Consensus 90 i~~Ge~~~ivG~sGsGKSTLl~ll~~~ 116 (632)
.++|++++|.|+|||||||++++|.+.
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 578999999999999999999999754
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.30 E-value=7.3e-05 Score=71.13 Aligned_cols=26 Identities=27% Similarity=0.221 Sum_probs=23.3
Q ss_pred eEEEEEecCCCChHHHHHhhhcCCCh
Q 047286 506 HTVALVGENGNGKSTVISLAERFHNP 531 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r~y~~ 531 (632)
..++|+||+||||||++++|.+++.|
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~~~ 32 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDPST 32 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCTTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 46799999999999999999998844
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00014 Score=79.84 Aligned_cols=28 Identities=25% Similarity=0.531 Sum_probs=26.2
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHH
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
+++++.+| +++|+|+||||||||+.+|.
T Consensus 54 ~~l~f~~g-~n~i~G~NGaGKS~lleAl~ 81 (517)
T 4ad8_A 54 LELELGGG-FCAFTGETGAGKSIIVDALG 81 (517)
T ss_dssp EEEECCCS-EEEEEESHHHHHHHHTHHHH
T ss_pred EEEecCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 88899999 99999999999999999885
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00013 Score=71.90 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=21.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHH
Q 047286 92 SGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 92 ~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
++++++|+||||||||||+++|.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 57999999999999999999997
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00011 Score=70.36 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=22.6
Q ss_pred EEEEEecCCCChHHHHHhhhcCCCh
Q 047286 507 TVALVGENGNGKSTVISLAERFHNP 531 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y~~ 531 (632)
.++|+||||||||||+++|.+.+++
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred EEEEECcCCCCHHHHHHHHHhhCCC
Confidence 5699999999999999999988764
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00016 Score=73.53 Aligned_cols=69 Identities=19% Similarity=0.221 Sum_probs=43.3
Q ss_pred eEEEEEecCCCChHHHHHhhhcCCChhh---------hcHHHHHHHHHHHHhcCCCccCcccccCCCCCChHHHHHH---
Q 047286 506 HTVALVGENGNGKSTVISLAERFHNPEQ---------VIYSWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRI--- 573 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~~~~~~~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRi--- 573 (632)
++++|+|++||||||++..|.+++.++. ........++..+...+ |++. + ...|+|++|++
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~--gl~~-~----~~~s~~~~~~v~~~ 177 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERV--GATV-I----SHSEGADPAAVAFD 177 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHH--TCEE-E----CCSTTCCHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHc--CCcE-E----ecCCccCHHHHHHH
Confidence 3679999999999999999998876543 11111122333333221 2221 1 14589999999
Q ss_pred HHHHHHhh
Q 047286 574 ARTRARNY 581 (632)
Q Consensus 574 aiARA~~~ 581 (632)
+|+||...
T Consensus 178 al~~a~~~ 185 (306)
T 1vma_A 178 AVAHALAR 185 (306)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhc
Confidence 88888543
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0001 Score=69.74 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=21.8
Q ss_pred EEEEEecCCCChHHHHHhhhcCCC
Q 047286 507 TVALVGENGNGKSTVISLAERFHN 530 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y~ 530 (632)
.++|+||||||||||+++|.+.++
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECcCCCCHHHHHHHHHhhCC
Confidence 569999999999999999998875
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00012 Score=67.79 Aligned_cols=24 Identities=42% Similarity=0.480 Sum_probs=22.4
Q ss_pred eCCCEEEEEcCCCchHHHHHHHHH
Q 047286 91 PSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 91 ~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
.+|++++|+|||||||||++++|.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~ 29 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVA 29 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHH
Confidence 468999999999999999999986
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00028 Score=79.68 Aligned_cols=118 Identities=25% Similarity=0.238 Sum_probs=68.5
Q ss_pred EEEeeCCCEEEEEcCCCchHHHHHHHHHhCCC----------------CCcHHhhcceEEEcccCcccccccccccccc-
Q 047286 87 LQHVPSGTTVALVGQSGSGKSTVINLVESFRF----------------YAPEAEQEKIGLVSKEPIFLFCDFNEGQYIP- 149 (632)
Q Consensus 87 ~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~----------------~~~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~- 149 (632)
+++++++..++|+|++|+|||||++.|.+... +.+.+.++.+++.+|...++..+... |+.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~--nliD 80 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRV--FLLD 80 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEE--EEEE
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEE--EEEe
Confidence 45678899999999999999999998863211 12333456788888877665554443 332
Q ss_pred -cCCCCCCHHHHHHHHHHccchhhHhhCCcccccccccCCCCHHHHHHHHHHHHHHhCCceEEEEecCchH
Q 047286 150 -YGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVVATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLIT 219 (632)
Q Consensus 150 -~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~~~v~ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~ 219 (632)
-|..+. ..++...+..+...-.+-. ++.++|+.+++.+. .+.+ .+..++++.|.++.
T Consensus 81 TpG~~~f-~~~~~~~l~~ad~~ilVvD---------~~~g~~~qt~~~~~-~~~~--~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 81 APGYGDF-VGEIRGALEAADAALVAVS---------AEAGVQVGTERAWT-VAER--LGLPRMVVVTKLDK 138 (665)
T ss_dssp CCCSGGG-HHHHHHHHHHCSEEEEEEE---------TTTCSCHHHHHHHH-HHHH--TTCCEEEEEECGGG
T ss_pred CCCccch-HHHHHHHHhhcCcEEEEEc---------CCcccchhHHHHHH-HHHH--ccCCEEEEecCCch
Confidence 222221 2334444444433211111 35678887774443 2322 36778888887654
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=7.9e-05 Score=78.15 Aligned_cols=27 Identities=30% Similarity=0.437 Sum_probs=24.6
Q ss_pred eEEEEEecCCCChHHHHHhhhcCCChh
Q 047286 506 HTVALVGENGNGKSTVISLAERFHNPE 532 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r~y~~~ 532 (632)
+.++|+|||||||||++++|.|+|+|+
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~~~~~ 163 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDYINQT 163 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCcC
Confidence 467999999999999999999998875
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00015 Score=66.89 Aligned_cols=24 Identities=33% Similarity=0.475 Sum_probs=21.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHh
Q 047286 92 SGTTVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 92 ~Ge~~~ivG~sGsGKSTLl~ll~~ 115 (632)
.|++++|+|||||||||++++|.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 478899999999999999999974
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00021 Score=64.57 Aligned_cols=28 Identities=29% Similarity=0.538 Sum_probs=23.3
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHH
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
..+++.+| +++|+|||||||||++.+|.
T Consensus 17 ~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 17 TVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 45566654 99999999999999999875
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=97.18 E-value=8.9e-05 Score=75.42 Aligned_cols=26 Identities=38% Similarity=0.510 Sum_probs=23.7
Q ss_pred EEEEEecCCCChHHHHHhhhcCCChh
Q 047286 507 TVALVGENGNGKSTVISLAERFHNPE 532 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y~~~ 532 (632)
+++|||||||||||+++.|.+++.|+
T Consensus 104 vi~lvG~nGsGKTTll~~Lagll~~~ 129 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTIAKLGRYYQNL 129 (304)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 66999999999999999999988764
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.18 E-value=6.3e-05 Score=71.75 Aligned_cols=29 Identities=31% Similarity=0.479 Sum_probs=26.5
Q ss_pred EEeeCCCEEEEEcCCCchHHHHHHHHHhC
Q 047286 88 QHVPSGTTVALVGQSGSGKSTVINLVESF 116 (632)
Q Consensus 88 ~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~ 116 (632)
|++++|..++|+|+||||||||++.+.+.
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 67899999999999999999999998754
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00012 Score=72.47 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=24.0
Q ss_pred EEEEEecCCCChHHHHHhhh---cCCChhh
Q 047286 507 TVALVGENGNGKSTVISLAE---RFHNPEQ 533 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~---r~y~~~~ 533 (632)
+++|+||+||||||++++|. |++.++.
T Consensus 29 ~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~ 58 (252)
T 4e22_A 29 VITVDGPSGAGKGTLCKALAESLNWRLLDS 58 (252)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCcCCC
Confidence 68999999999999999999 8876654
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00017 Score=76.65 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=23.7
Q ss_pred eCCCEEEEEcCCCchHHHHHHHHHhC
Q 047286 91 PSGTTVALVGQSGSGKSTVINLVESF 116 (632)
Q Consensus 91 ~~Ge~~~ivG~sGsGKSTLl~ll~~~ 116 (632)
++|++++|+||||||||||++++.+.
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhh
Confidence 68999999999999999999998743
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0001 Score=72.58 Aligned_cols=27 Identities=22% Similarity=0.265 Sum_probs=22.3
Q ss_pred EEEeeEEEEEecCCCChHHHHHhhhcC
Q 047286 502 IVFEHTVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 502 I~f~~~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
+.-+..+||+||+||||||++++|.++
T Consensus 22 i~~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 22 SMRPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp -CCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 333457899999999999999999875
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00012 Score=78.85 Aligned_cols=28 Identities=32% Similarity=0.342 Sum_probs=26.1
Q ss_pred eEEEEEecCCCChHHHHHhhhcCCChhh
Q 047286 506 HTVALVGENGNGKSTVISLAERFHNPEQ 533 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r~y~~~~ 533 (632)
+++||+||||||||||+++|.|++.|++
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~p~~ 57 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALIPDL 57 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHCCCT
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCCCCC
Confidence 5899999999999999999999998865
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00019 Score=73.43 Aligned_cols=40 Identities=15% Similarity=0.371 Sum_probs=29.3
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCCcHHhhcceEEEcccCc
Q 047286 95 TVALVGQSGSGKSTVINLVESFRFYAPEAEQEKIGLVSKEPI 136 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~~~~~~~~~~r~~i~~v~Q~~~ 136 (632)
++||+||||||||||+++|.++....+. ...+++++++.+
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~~~~~--~~~v~~i~~D~f 133 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLSRWPD--HPNVEVITTDGF 133 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSTT--CCCEEEEEGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCC--CCeEEEEeeccc
Confidence 8999999999999999999744221111 245788888754
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00013 Score=74.07 Aligned_cols=29 Identities=28% Similarity=0.386 Sum_probs=24.9
Q ss_pred eeEEEEEecCCCChHHHHHhhhcCCChhh
Q 047286 505 EHTVALVGENGNGKSTVISLAERFHNPEQ 533 (632)
Q Consensus 505 ~~~vaIVG~SGsGKSTL~~ll~r~y~~~~ 533 (632)
+++++|||||||||||+++.|.+++.|+.
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~~~~ 128 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLKNEG 128 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 34679999999999999999999887643
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00022 Score=67.81 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=23.3
Q ss_pred eeCCCEEEEEcCCCchHHHHHHHHHh
Q 047286 90 VPSGTTVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 90 i~~Ge~~~ivG~sGsGKSTLl~ll~~ 115 (632)
.++|++++|+|+|||||||+++.|.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999999873
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00015 Score=70.04 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=21.5
Q ss_pred EEEEEecCCCChHHHHHhhhcCC
Q 047286 507 TVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
++||+|++||||||++++|.+.|
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999876
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00012 Score=76.51 Aligned_cols=30 Identities=20% Similarity=0.295 Sum_probs=27.9
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHh
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~ 115 (632)
+++.+++|++++|+||||||||||+++|.+
T Consensus 162 ~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 162 MVYNIPKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp HHHCCTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred cccccCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 678899999999999999999999999974
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00028 Score=75.53 Aligned_cols=30 Identities=20% Similarity=0.376 Sum_probs=26.7
Q ss_pred EEEeeCCCEEEEEcCCCchHHHHHHHHHhC
Q 047286 87 LQHVPSGTTVALVGQSGSGKSTVINLVESF 116 (632)
Q Consensus 87 ~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~ 116 (632)
.+++.+|++++|+||||||||||+++|.++
T Consensus 20 ~~~~~~~~~~~i~G~nG~GKstll~ai~~~ 49 (430)
T 1w1w_A 20 KVGFGESNFTSIIGPNGSGKSNMMDAISFV 49 (430)
T ss_dssp EEECTTCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEecCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 467788999999999999999999999754
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00018 Score=73.41 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=22.3
Q ss_pred EEEEEecCCCChHHHHHhhhcCCC
Q 047286 507 TVALVGENGNGKSTVISLAERFHN 530 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y~ 530 (632)
++||+||+|||||||+++|.+++.
T Consensus 82 iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 82 IISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 569999999999999999999876
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0013 Score=69.29 Aligned_cols=27 Identities=26% Similarity=0.295 Sum_probs=23.4
Q ss_pred cccEEEeeEEEEEecCCCChHHHHHhh
Q 047286 499 RGDIVFEHTVALVGENGNGKSTVISLA 525 (632)
Q Consensus 499 ~g~I~f~~~vaIVG~SGsGKSTL~~ll 525 (632)
.|-|+-++.++|+||+|||||||+..+
T Consensus 172 gGGI~~Gei~~I~G~sGsGKTTLl~~l 198 (400)
T 3lda_A 172 GGGVETGSITELFGEFRTGKSQLCHTL 198 (400)
T ss_dssp TTSEETTSEEEEEESTTSSHHHHHHHH
T ss_pred cCCcCCCcEEEEEcCCCCChHHHHHHH
Confidence 467888888999999999999999844
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.03 E-value=8.2e-05 Score=73.41 Aligned_cols=29 Identities=38% Similarity=0.534 Sum_probs=27.7
Q ss_pred EEEEeeC---CCEEEEEcCCCchHHHHHHHHH
Q 047286 86 FLQHVPS---GTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 86 ~~~~i~~---Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
+||+|++ |++++|+|++||||||+.++|.
T Consensus 38 ~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La 69 (250)
T 3nwj_A 38 KAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMA 69 (250)
T ss_dssp HHHTTHHHHTTCCEEEECSTTSCHHHHHHHHH
T ss_pred hhhhhhhhcCCCEEEEECCCCCCHHHHHHHHH
Confidence 8888999 9999999999999999999996
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00027 Score=71.89 Aligned_cols=29 Identities=17% Similarity=0.210 Sum_probs=25.5
Q ss_pred eeEEEEEecCCCChHHHHHhhhcCCChhh
Q 047286 505 EHTVALVGENGNGKSTVISLAERFHNPEQ 533 (632)
Q Consensus 505 ~~~vaIVG~SGsGKSTL~~ll~r~y~~~~ 533 (632)
+++++|+||||||||||+++|.++..|+.
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~~~~~ 197 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGLKLRV 197 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCCCC-
T ss_pred CCeEEEECCCCCcHHHHHHHhcccccccc
Confidence 34679999999999999999999998865
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0041 Score=64.38 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=23.1
Q ss_pred EeeCCCEEEEEcCCCchHHHHHHHHH
Q 047286 89 HVPSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 89 ~i~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
-+++|+++.|.||+|||||||+..+.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la 82 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAV 82 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHH
Confidence 37899999999999999999987654
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00025 Score=65.30 Aligned_cols=25 Identities=36% Similarity=0.367 Sum_probs=21.9
Q ss_pred EEEEEecCCCChHHHHHhhhcCCCh
Q 047286 507 TVALVGENGNGKSTVISLAERFHNP 531 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y~~ 531 (632)
.++|+|++||||||++++|.+.+.+
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5899999999999999999986543
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00032 Score=66.62 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.3
Q ss_pred eEEEEEecCCCChHHHHHhhhcCC
Q 047286 506 HTVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
..++|+|+|||||||++++|.+.+
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 467999999999999999998754
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00037 Score=68.44 Aligned_cols=27 Identities=22% Similarity=0.358 Sum_probs=24.1
Q ss_pred eEEEEEecCCCChHHHHHhhh---cCCChh
Q 047286 506 HTVALVGENGNGKSTVISLAE---RFHNPE 532 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~---r~y~~~ 532 (632)
..++|+||+||||||++++|. ++..++
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 378999999999999999999 887764
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0002 Score=71.76 Aligned_cols=28 Identities=32% Similarity=0.525 Sum_probs=24.8
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHh
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~ 115 (632)
+++++++| ++|+||||||||||+++|.+
T Consensus 39 ~~l~~~~G--vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 39 LGLVTPAG--VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp TTCCCCSE--EEEESSTTSCHHHHHHHHHH
T ss_pred cCCCCCCe--EEEECCCCCcHHHHHHHHHH
Confidence 55677888 99999999999999999974
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00021 Score=82.84 Aligned_cols=27 Identities=22% Similarity=0.306 Sum_probs=22.4
Q ss_pred cEEEe----eEEEEEecCCCChHHHHHhhhc
Q 047286 501 DIVFE----HTVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 501 ~I~f~----~~vaIVG~SGsGKSTL~~ll~r 527 (632)
+|.|. +.++|+||+||||||+++++.+
T Consensus 665 dvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 665 NTDLSEDSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp EEEECTTSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred cccccCCCCeEEEEECCCCCchHHHHHHHHH
Confidence 45553 4899999999999999998764
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00029 Score=74.53 Aligned_cols=29 Identities=28% Similarity=0.327 Sum_probs=24.1
Q ss_pred cEEEeeE--EEEEecCCCChHHHHHhhhcCC
Q 047286 501 DIVFEHT--VALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 501 ~I~f~~~--vaIVG~SGsGKSTL~~ll~r~y 529 (632)
+|.-+.. +|||||||||||||+++|+|+.
T Consensus 36 ~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 36 SVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp SCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred EecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 4455556 9999999999999999999974
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00024 Score=73.74 Aligned_cols=28 Identities=29% Similarity=0.406 Sum_probs=24.5
Q ss_pred eEEEEEecCCCChHHHHHhhhcCCChhh
Q 047286 506 HTVALVGENGNGKSTVISLAERFHNPEQ 533 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r~y~~~~ 533 (632)
++++|||||||||||+++.|.+++.|+.
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag~l~~~~ 185 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAHRLKNEG 185 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCChHHHHHHHHHhhccccC
Confidence 4679999999999999999999887643
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00048 Score=65.64 Aligned_cols=25 Identities=16% Similarity=0.324 Sum_probs=22.5
Q ss_pred eeEEEEEecCCCChHHHHHhhhcCC
Q 047286 505 EHTVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 505 ~~~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
...++|+|++||||||++++|.+.+
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3468999999999999999999976
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00045 Score=64.77 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=20.1
Q ss_pred eEEEEEecCCCChHHHHHhhhc
Q 047286 506 HTVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r 527 (632)
..++|+||+||||||++++|.+
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4689999999999999999986
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00031 Score=66.69 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=20.7
Q ss_pred eEEEEEecCCCChHHHHHhhhcC
Q 047286 506 HTVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
..++|+|++||||||++++|.+.
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999875
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00026 Score=72.74 Aligned_cols=28 Identities=29% Similarity=0.436 Sum_probs=24.4
Q ss_pred eEEEEEecCCCChHHHHHhhhcCCChhh
Q 047286 506 HTVALVGENGNGKSTVISLAERFHNPEQ 533 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r~y~~~~ 533 (632)
++++|||||||||||+++.|.+++.|+.
T Consensus 130 ~vi~lvG~nGaGKTTll~~Lag~l~~~~ 157 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTIAKLANWLKNHG 157 (328)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 3669999999999999999999887643
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00044 Score=75.38 Aligned_cols=26 Identities=31% Similarity=0.566 Sum_probs=23.5
Q ss_pred EEEEEecCCCChHHHHHhhhcCCChh
Q 047286 507 TVALVGENGNGKSTVISLAERFHNPE 532 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y~~~ 532 (632)
.++|+|||||||||++++|.++++|+
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i~~~ 287 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFIPPD 287 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGSCTT
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCCC
Confidence 35999999999999999999998774
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00046 Score=65.70 Aligned_cols=26 Identities=35% Similarity=0.502 Sum_probs=23.3
Q ss_pred EeeCCCEEEEEcCCCchHHHHHHHHH
Q 047286 89 HVPSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 89 ~i~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
+..+|.+++|+|||||||||+.+.|.
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~ 33 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVL 33 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHH
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999999886
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00037 Score=73.94 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=22.8
Q ss_pred EEEEEecCCCChHHHHHhhhcCCChh
Q 047286 507 TVALVGENGNGKSTVISLAERFHNPE 532 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y~~~ 532 (632)
.++|+|||||||||++++|.+++.|+
T Consensus 169 ii~I~GpnGSGKTTlL~allg~l~~~ 194 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQELNSS 194 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHCCT
T ss_pred eEEEECCCCCCHHHHHHHHHhhcCCC
Confidence 45999999999999999999987653
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00066 Score=65.52 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=21.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHh
Q 047286 92 SGTTVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 92 ~Ge~~~ivG~sGsGKSTLl~ll~~ 115 (632)
.+.+++|+||+||||||++++|.+
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999863
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00048 Score=75.71 Aligned_cols=27 Identities=37% Similarity=0.500 Sum_probs=24.9
Q ss_pred EeeCCCEEEEEcCCCchHHHHHHHHHh
Q 047286 89 HVPSGTTVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 89 ~i~~Ge~~~ivG~sGsGKSTLl~ll~~ 115 (632)
.+++|++++|+|+||||||||+++|.+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~ 391 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAA 391 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHH
Confidence 477999999999999999999999974
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00069 Score=62.88 Aligned_cols=24 Identities=50% Similarity=0.585 Sum_probs=21.9
Q ss_pred eCCCEEEEEcCCCchHHHHHHHHH
Q 047286 91 PSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 91 ~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
++|++++|+|++||||||++++|.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~ 26 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALE 26 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 478999999999999999999996
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00044 Score=70.62 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=21.8
Q ss_pred EEEEEecCCCChHHHHHhhhcCCC
Q 047286 507 TVALVGENGNGKSTVISLAERFHN 530 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y~ 530 (632)
++||+|||||||||++++|.++++
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 569999999999999999998865
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00034 Score=69.03 Aligned_cols=28 Identities=36% Similarity=0.618 Sum_probs=24.3
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHh
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~ 115 (632)
+++++++| ++|+||||||||||++++.+
T Consensus 44 ~~~~~~~g--~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 44 MGARIPKG--VLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp TTCCCCSE--EEEECCTTSSHHHHHHHHHH
T ss_pred cCCCCCCe--EEEECCCCCCHHHHHHHHHH
Confidence 45567788 99999999999999999974
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00041 Score=74.48 Aligned_cols=27 Identities=33% Similarity=0.497 Sum_probs=24.0
Q ss_pred eEEEEEecCCCChHHHHHhhhcCCChh
Q 047286 506 HTVALVGENGNGKSTVISLAERFHNPE 532 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r~y~~~ 532 (632)
.+++|||+|||||||+++.|.+++.++
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAgll~~~ 320 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLARQFEQQ 320 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCcccHHHHHHHHHHHhhhc
Confidence 466999999999999999999987664
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00031 Score=71.28 Aligned_cols=28 Identities=21% Similarity=0.334 Sum_probs=20.6
Q ss_pred eEEEEEecCCCChHHHHHhhhcCCChhh
Q 047286 506 HTVALVGENGNGKSTVISLAERFHNPEQ 533 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r~y~~~~ 533 (632)
++++|+||||+|||||++.|.++..+..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~~~~~ 201 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPELGLRT 201 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC------
T ss_pred CEEEEECCCCCCHHHHHHHhcccccccc
Confidence 4669999999999999999999987754
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=96.68 E-value=9.3e-05 Score=71.83 Aligned_cols=27 Identities=33% Similarity=0.417 Sum_probs=24.6
Q ss_pred EEEEEecCCCChHHHHHhhhcCCChhh
Q 047286 507 TVALVGENGNGKSTVISLAERFHNPEQ 533 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y~~~~ 533 (632)
+++|+||||||||||+++|.++..|++
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~~~~~ 55 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTALIPDL 55 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHHSCCT
T ss_pred EEEEECCCCCCHHHHHHHHhcccccCC
Confidence 579999999999999999999988765
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.67 E-value=0.00065 Score=64.54 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=21.8
Q ss_pred eeEEEEEecCCCChHHHHHhhhcCC
Q 047286 505 EHTVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 505 ~~~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
+.+++|+|++|||||||++.|.+..
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999999876
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.66 E-value=0.00049 Score=65.40 Aligned_cols=25 Identities=16% Similarity=0.230 Sum_probs=21.8
Q ss_pred EEEEEecCCCChHHHHHhhhcCCCh
Q 047286 507 TVALVGENGNGKSTVISLAERFHNP 531 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y~~ 531 (632)
.++|+|++||||||+++.|.+++.+
T Consensus 24 ~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhh
Confidence 5699999999999999999886543
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.00098 Score=63.49 Aligned_cols=28 Identities=25% Similarity=0.446 Sum_probs=23.2
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHH
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
..+++.+ .+++|+|||||||||++.+|.
T Consensus 17 ~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 17 TVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 4556665 499999999999999999874
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.65 E-value=0.00042 Score=69.41 Aligned_cols=28 Identities=36% Similarity=0.618 Sum_probs=24.4
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHh
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~ 115 (632)
+++++++| ++|+||||||||||+++|.+
T Consensus 68 ~~~~~~~g--vll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 68 MGARIPKG--VLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp TTCCCCCE--EEEECCTTSSHHHHHHHHHH
T ss_pred cCCCCCCe--EEEECCCcChHHHHHHHHHH
Confidence 45667788 99999999999999999974
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.65 E-value=0.00084 Score=62.73 Aligned_cols=29 Identities=21% Similarity=0.518 Sum_probs=24.6
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHH
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
+|++.++|..++|+|++||||||+.+.|.
T Consensus 3 ~~~~~~~~~~I~l~G~~GsGKSTv~~~La 31 (184)
T 1y63_A 3 GSMEQPKGINILITGTPGTGKTSMAEMIA 31 (184)
T ss_dssp ---CCCSSCEEEEECSTTSSHHHHHHHHH
T ss_pred cCcCCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 57778889999999999999999999986
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.00081 Score=68.30 Aligned_cols=27 Identities=26% Similarity=0.326 Sum_probs=23.9
Q ss_pred eEEEEEecCCCChHHHHHhhhcCCChhh
Q 047286 506 HTVALVGENGNGKSTVISLAERFHNPEQ 533 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r~y~~~~ 533 (632)
.+++|+||||||||||+++|. +..|+.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~~~~~ 192 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GEELRT 192 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SCCCCC
T ss_pred cEEEEECCCCCCHHHHHHHHH-HhhCcc
Confidence 366999999999999999999 888754
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.00081 Score=62.08 Aligned_cols=22 Identities=36% Similarity=0.453 Sum_probs=19.9
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
.++|+|++||||||++++|.+.
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHh
Confidence 5799999999999999998864
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0017 Score=71.26 Aligned_cols=49 Identities=14% Similarity=0.164 Sum_probs=44.6
Q ss_pred ccCCCCHHHHHHHHHHHHHHhCCceEEEEecCchHHhhcCeEEEEeCCe
Q 047286 185 ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRNADCIIMVSKGK 233 (632)
Q Consensus 185 ~ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~aD~i~vl~~G~ 233 (632)
+|++||+.+...+.+.|+++.++.|+|+|||+++.+..||++++|+++.
T Consensus 426 p~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~~~~~~~ 474 (517)
T 4ad8_A 426 VDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQV 474 (517)
T ss_dssp CSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEEEEECCE
T ss_pred CcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeccc
Confidence 4999999999999999999877899999999999888899999996653
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.00082 Score=65.29 Aligned_cols=23 Identities=35% Similarity=0.599 Sum_probs=21.1
Q ss_pred eEEEEEecCCCChHHHHHhhhcC
Q 047286 506 HTVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
..++|+|++||||||++++|.++
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 46799999999999999999886
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.00084 Score=62.41 Aligned_cols=31 Identities=32% Similarity=0.324 Sum_probs=24.2
Q ss_pred cEEEe-eEEEEEecCCCChHHHHHhhhcCCCh
Q 047286 501 DIVFE-HTVALVGENGNGKSTVISLAERFHNP 531 (632)
Q Consensus 501 ~I~f~-~~vaIVG~SGsGKSTL~~ll~r~y~~ 531 (632)
++.|. ..++|+||||||||||+.+|..+..+
T Consensus 21 ~~~~~~g~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 21 VIPFSKGFTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp EEECCSSEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred EEecCCCcEEEECCCCCCHHHHHHHHHHHHcC
Confidence 34554 37899999999999999998775433
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0011 Score=62.08 Aligned_cols=24 Identities=38% Similarity=0.638 Sum_probs=21.1
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCC
Q 047286 95 TVALVGQSGSGKSTVINLVESFRF 118 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~~~~ 118 (632)
.++|+|+||||||||++.+.+..+
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 689999999999999999986543
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.57 E-value=0.00098 Score=63.35 Aligned_cols=22 Identities=36% Similarity=0.578 Sum_probs=20.3
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
.+||+|++||||||+.++|.++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 5899999999999999999884
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0011 Score=63.09 Aligned_cols=21 Identities=48% Similarity=0.703 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHHh
Q 047286 95 TVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~ 115 (632)
+++|+||+||||||+.++|.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999985
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.00051 Score=62.02 Aligned_cols=28 Identities=21% Similarity=0.215 Sum_probs=24.1
Q ss_pred EeeEEEEEecCCCChHHHHHhhhcCCCh
Q 047286 504 FEHTVALVGENGNGKSTVISLAERFHNP 531 (632)
Q Consensus 504 f~~~vaIVG~SGsGKSTL~~ll~r~y~~ 531 (632)
-++.++|+||+|||||||++++.+.+.+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3457899999999999999999987654
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0012 Score=62.05 Aligned_cols=25 Identities=36% Similarity=0.508 Sum_probs=22.3
Q ss_pred EEEEEecCCCChHHHHHhhhcCCCh
Q 047286 507 TVALVGENGNGKSTVISLAERFHNP 531 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y~~ 531 (632)
+++|||++|||||||++.+.+...+
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~ 55 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFN 55 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCC
Confidence 7899999999999999999887543
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.00062 Score=70.27 Aligned_cols=26 Identities=31% Similarity=0.373 Sum_probs=22.8
Q ss_pred eEEEEEecCCCChHHHHHhhhcCCCh
Q 047286 506 HTVALVGENGNGKSTVISLAERFHNP 531 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r~y~~ 531 (632)
.+++|+||+|||||||++.|.+++.|
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~g~~~~ 81 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGSLLTA 81 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 46799999999999999999987654
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0008 Score=68.35 Aligned_cols=46 Identities=17% Similarity=0.304 Sum_probs=33.1
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHHhhcceEEEcccC
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQEKIGLVSKEP 135 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~~r~~i~~v~Q~~ 135 (632)
++++.++|++++|+|||||||||+++.|.+. +.+ ...++.++..++
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~--l~~--~g~kV~lv~~D~ 142 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKM--FVD--EGKSVVLAAADT 142 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHH--HHH--TTCCEEEEEECT
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHH--HHh--cCCEEEEEcccc
Confidence 4556788999999999999999999988732 211 123566665553
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.00091 Score=63.32 Aligned_cols=23 Identities=30% Similarity=0.306 Sum_probs=20.8
Q ss_pred eeEEEEEecCCCChHHHHHhhhc
Q 047286 505 EHTVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 505 ~~~vaIVG~SGsGKSTL~~ll~r 527 (632)
...++|+|++||||||+.+.|.+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 34799999999999999999986
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.001 Score=63.17 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.2
Q ss_pred EEEEEecCCCChHHHHHhhhcCC
Q 047286 507 TVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
.++|+|||||||||+++.|...+
T Consensus 14 ~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 46999999999999999887655
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0015 Score=61.48 Aligned_cols=24 Identities=38% Similarity=0.638 Sum_probs=20.9
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCC
Q 047286 95 TVALVGQSGSGKSTVINLVESFRF 118 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~~~~ 118 (632)
.++|+|+||||||||++.+.+..+
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~ 30 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEF 30 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 589999999999999999986543
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0013 Score=69.72 Aligned_cols=24 Identities=42% Similarity=0.425 Sum_probs=21.9
Q ss_pred EEEEEecCCCChHHHHHhhhcCCC
Q 047286 507 TVALVGENGNGKSTVISLAERFHN 530 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y~ 530 (632)
+++|||+||||||||++.|++...
T Consensus 33 ~I~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 33 TLMVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp EEEEECCTTSSHHHHHHHHTTCCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 369999999999999999999865
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0013 Score=62.28 Aligned_cols=22 Identities=36% Similarity=0.569 Sum_probs=20.2
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
.++|+|++||||||+++.|.++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFREL 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHHHC
Confidence 5899999999999999999883
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0014 Score=62.03 Aligned_cols=21 Identities=38% Similarity=0.650 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHHh
Q 047286 95 TVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~ 115 (632)
+++|+|+|||||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999984
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.00067 Score=77.87 Aligned_cols=28 Identities=21% Similarity=0.313 Sum_probs=23.9
Q ss_pred cEEEe---eEEEEEecCCCChHHHHHhhhcC
Q 047286 501 DIVFE---HTVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 501 ~I~f~---~~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
++.|. +.++|+||+||||||+++++.++
T Consensus 600 disl~~~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 600 PLNLSPQRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp EEEECSSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred cccccCCCcEEEEECCCCCChHHHHHHHHHH
Confidence 56664 48999999999999999998875
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0014 Score=66.49 Aligned_cols=26 Identities=46% Similarity=0.526 Sum_probs=19.7
Q ss_pred EEEEEecCCCChHHHHHhhhcC-CChh
Q 047286 507 TVALVGENGNGKSTVISLAERF-HNPE 532 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~-y~~~ 532 (632)
+++||||+|+|||||++.|++. ..|+
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g~~~~~~ 46 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFLTDLYPE 46 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC------
T ss_pred EEEEECCCCCCHHHHHHHHhCCCccCC
Confidence 4699999999999999999886 4443
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0016 Score=63.23 Aligned_cols=29 Identities=34% Similarity=0.331 Sum_probs=23.1
Q ss_pred EEEEee---CCCEEEEEcCCCchHHHHHHHHH
Q 047286 86 FLQHVP---SGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 86 ~~~~i~---~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
.++++. +|.+++|.|++||||||+++.|.
T Consensus 16 ~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~ 47 (229)
T 4eaq_A 16 ENLYFQSNAMSAFITFEGPEGSGKTTVINEVY 47 (229)
T ss_dssp ----CCCCCCCEEEEEECCTTSCHHHHHHHHH
T ss_pred CCeeEeecCCCeEEEEEcCCCCCHHHHHHHHH
Confidence 444444 99999999999999999999986
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0018 Score=59.58 Aligned_cols=26 Identities=27% Similarity=0.544 Sum_probs=22.0
Q ss_pred eCCCEEEEEcCCCchHHHHHHHHHhC
Q 047286 91 PSGTTVALVGQSGSGKSTVINLVESF 116 (632)
Q Consensus 91 ~~Ge~~~ivG~sGsGKSTLl~ll~~~ 116 (632)
++|..++|+|++|+|||||++.+.+.
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 36789999999999999999999753
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0016 Score=66.72 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=21.6
Q ss_pred EEEEEecCCCChHHHHHhhhcCC
Q 047286 507 TVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
+++|+|++||||||+++.|.+++
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 67999999999999999999886
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0012 Score=67.55 Aligned_cols=30 Identities=27% Similarity=0.312 Sum_probs=27.4
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHH
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
.++|++++|++++++|+||+||||++..|.
T Consensus 97 ~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA 126 (320)
T 1zu4_A 97 RIDFKENRLNIFMLVGVNGTGKTTSLAKMA 126 (320)
T ss_dssp CCCCCTTSCEEEEEESSTTSSHHHHHHHHH
T ss_pred CccccCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 377888999999999999999999999886
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0018 Score=61.04 Aligned_cols=23 Identities=39% Similarity=0.609 Sum_probs=21.1
Q ss_pred EEEEEecCCCChHHHHHhhhcCC
Q 047286 507 TVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
+++|+|++|||||||++.+.+..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999998864
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0018 Score=67.14 Aligned_cols=31 Identities=23% Similarity=0.320 Sum_probs=28.4
Q ss_pred cccEEEeeEEEEEecCCCChHHHHHhhhcCC
Q 047286 499 RGDIVFEHTVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 499 ~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
.|.|+.+.+++|+||+|||||||++.+++.+
T Consensus 125 ~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 125 GGGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5678888899999999999999999999887
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0017 Score=60.34 Aligned_cols=24 Identities=29% Similarity=0.519 Sum_probs=21.5
Q ss_pred eCCCEEEEEcCCCchHHHHHHHHH
Q 047286 91 PSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 91 ~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
.+|.+++|+|++||||||+.+.|.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 467899999999999999999986
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.00051 Score=70.87 Aligned_cols=122 Identities=16% Similarity=0.122 Sum_probs=65.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCC----C-------CCcHH--------hhcceEEEcccCcccccccccccccc-----
Q 047286 94 TTVALVGQSGSGKSTVINLVESFR----F-------YAPEA--------EQEKIGLVSKEPIFLFCDFNEGQYIP----- 149 (632)
Q Consensus 94 e~~~ivG~sGsGKSTLl~ll~~~~----~-------~~~~~--------~r~~i~~v~Q~~~~~~~~~~~~~~i~----- 149 (632)
+.++|+||||+|||||++++.+.. . ..... .+..+.+++|...+.. +..+ ++.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE~~~l~~-~~~e--~L~~~~~~ 128 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNK-AVEE--LLYSAIED 128 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEETGGGCCH-HHHH--HHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcchhhcCH-HHHH--HHHHHHHh
Confidence 689999999999999999986432 0 01111 1345778877654332 2211 110
Q ss_pred cCC-----CCCCHHHHHHHHHHc---cchhhHhhCCcccccccc-cCCCCHHHHHHHHHHHHHHhCCceEEEEecCchHH
Q 047286 150 YGK-----QNASDEHIRPAVQLA---NAEKSIDKLPLGLDTVVA-TNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITI 220 (632)
Q Consensus 150 ~~~-----~~~~~~~~~~~~~~~---~l~~~i~~l~~g~~~~v~-ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~ 220 (632)
+.. .....+.+...+... +.......++.|+.++++ ..+||+.+.+.+.+.|++..+.. -++|+.+.+
T Consensus 129 ~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~---~~~~~~~~~ 205 (334)
T 1in4_A 129 FQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLM---DVEIEDAAA 205 (334)
T ss_dssp SCCCC---------------CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHT---TCCBCHHHH
T ss_pred cccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHc---CCCcCHHHH
Confidence 000 000111122222211 233455678888888875 46789988888888887764311 135665554
Q ss_pred h
Q 047286 221 R 221 (632)
Q Consensus 221 ~ 221 (632)
.
T Consensus 206 ~ 206 (334)
T 1in4_A 206 E 206 (334)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.002 Score=58.99 Aligned_cols=22 Identities=27% Similarity=0.149 Sum_probs=19.6
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
.++|+|++||||||+++.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5799999999999999998754
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0021 Score=57.91 Aligned_cols=26 Identities=27% Similarity=0.519 Sum_probs=21.7
Q ss_pred cEEEe-eEEEEEecCCCChHHHHHhhh
Q 047286 501 DIVFE-HTVALVGENGNGKSTVISLAE 526 (632)
Q Consensus 501 ~I~f~-~~vaIVG~SGsGKSTL~~ll~ 526 (632)
.|.|. ...+|+||+|||||||+.+|.
T Consensus 18 ~i~f~~g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 18 VVEFKEGINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEECCSEEEEEECCTTSSHHHHHHHHH
T ss_pred EEEcCCCeEEEECCCCCCHHHHHHHHH
Confidence 46665 378999999999999998765
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.002 Score=60.94 Aligned_cols=22 Identities=36% Similarity=0.557 Sum_probs=20.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHH
Q 047286 93 GTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 93 Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
..+++|+|++||||||+.+.|.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~ 39 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIA 39 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999986
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0019 Score=61.16 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=19.6
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
.++|+|++||||||+++.|.+.
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5799999999999999988754
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0021 Score=61.33 Aligned_cols=25 Identities=44% Similarity=0.461 Sum_probs=23.1
Q ss_pred eeCCCEEEEEcCCCchHHHHHHHHH
Q 047286 90 VPSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 90 i~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
+++|.+++|+|++||||||+.+.|.
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~ 46 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELE 46 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHH
Confidence 5678999999999999999999986
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0026 Score=59.29 Aligned_cols=25 Identities=36% Similarity=0.573 Sum_probs=22.8
Q ss_pred eeCCCEEEEEcCCCchHHHHHHHHH
Q 047286 90 VPSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 90 i~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
..+|.++.|+|++||||||+.+.|.
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~ 34 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLA 34 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHH
Confidence 4578999999999999999999986
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0024 Score=59.25 Aligned_cols=23 Identities=26% Similarity=0.549 Sum_probs=20.6
Q ss_pred EEEEEecCCCChHHHHHhhhcCC
Q 047286 507 TVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
+++|||++|+|||||++.+.+.+
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998854
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.003 Score=58.20 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=20.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHH
Q 047286 93 GTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 93 Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
|.++.|+|++||||||+.+.|.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La 24 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQ 24 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 5789999999999999999986
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0025 Score=60.12 Aligned_cols=22 Identities=36% Similarity=0.649 Sum_probs=20.4
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
.|+|+|++||||||+.++|.+.
T Consensus 10 ~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 6899999999999999999875
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0016 Score=64.09 Aligned_cols=23 Identities=39% Similarity=0.546 Sum_probs=21.0
Q ss_pred eeEEEEEecCCCChHHHHHhhhc
Q 047286 505 EHTVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 505 ~~~vaIVG~SGsGKSTL~~ll~r 527 (632)
+.+++|+|++||||||+.++|.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 44789999999999999999988
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0011 Score=63.31 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.3
Q ss_pred EEEEEecCCCChHHHHHhhhcCC
Q 047286 507 TVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
.|+|+|++||||||++++|.+.+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 57999999999999999987654
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0025 Score=58.21 Aligned_cols=20 Identities=30% Similarity=0.521 Sum_probs=18.3
Q ss_pred EEEEEecCCCChHHHHHhhh
Q 047286 507 TVALVGENGNGKSTVISLAE 526 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~ 526 (632)
.++|+|++||||||+++.|.
T Consensus 3 ~I~l~G~~GsGKsT~a~~L~ 22 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLLK 22 (179)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57999999999999999984
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0026 Score=57.86 Aligned_cols=22 Identities=32% Similarity=0.446 Sum_probs=20.4
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
+++|+|++|+|||||++.+.+.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999874
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.002 Score=61.98 Aligned_cols=31 Identities=29% Similarity=0.225 Sum_probs=25.9
Q ss_pred ccEEEeeEEEEEecCCCChHHHHHhhhcCCC
Q 047286 500 GDIVFEHTVALVGENGNGKSTVISLAERFHN 530 (632)
Q Consensus 500 g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~ 530 (632)
|.+.-++.++|+||+|||||||++.+.+...
T Consensus 18 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~ 48 (235)
T 2w0m_A 18 GGIPQGFFIALTGEPGTGKTIFSLHFIAKGL 48 (235)
T ss_dssp TSEETTCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4677677889999999999999998886543
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0032 Score=57.57 Aligned_cols=21 Identities=33% Similarity=0.248 Sum_probs=19.1
Q ss_pred CEEEEEcCCCchHHHHHHHHH
Q 047286 94 TTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 94 e~~~ivG~sGsGKSTLl~ll~ 114 (632)
.+++|.|++||||||+.+.|.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~ 22 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLS 22 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999986
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.003 Score=65.50 Aligned_cols=41 Identities=27% Similarity=0.436 Sum_probs=29.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCCcHHhhcceEEEcccCc
Q 047286 92 SGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQEKIGLVSKEPI 136 (632)
Q Consensus 92 ~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~~r~~i~~v~Q~~~ 136 (632)
++.+++|+|++|||||||++.|.+.. .+ ...+++++..+|.
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~--~~--~~~~v~V~~~dp~ 113 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKML--TE--RGHKLSVLAVDPS 113 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH--HH--TTCCEEEEECCC-
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh--hh--cCCeEEEEeecCC
Confidence 46799999999999999999987421 11 1245777777664
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=96.04 E-value=0.003 Score=58.05 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=20.9
Q ss_pred EEEEEecCCCChHHHHHhhhcCC
Q 047286 507 TVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
+++|||++|+|||||++.|.+..
T Consensus 6 ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998753
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0026 Score=58.99 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=22.5
Q ss_pred eEEEEEecCCCChHHHHHhhhcCCCh
Q 047286 506 HTVALVGENGNGKSTVISLAERFHNP 531 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r~y~~ 531 (632)
+.++|+||+|+|||||++.+.+.+.+
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~~~~ 64 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKAIYE 64 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 35699999999999999999887654
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0031 Score=58.17 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=20.1
Q ss_pred EEEEEecCCCChHHHHHhhhcCC
Q 047286 507 TVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
.+.|+|++||||||+.+.|..-.
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 57899999999999999988643
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0028 Score=59.36 Aligned_cols=20 Identities=30% Similarity=0.509 Sum_probs=17.4
Q ss_pred EEEEecCCCChHHHHHhhhc
Q 047286 508 VALVGENGNGKSTVISLAER 527 (632)
Q Consensus 508 vaIVG~SGsGKSTL~~ll~r 527 (632)
+.|+|||||||+||++.|..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67999999999999987653
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0032 Score=58.24 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=20.0
Q ss_pred EEEEEecCCCChHHHHHhhhcCC
Q 047286 507 TVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
.++|+|+||||||||++.|.+..
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHhc
Confidence 57999999999999999877653
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0032 Score=59.31 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=19.6
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
.|+|+|++||||||++++|.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 479999999999999999987
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0025 Score=64.64 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=21.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhC
Q 047286 92 SGTTVALVGQSGSGKSTVINLVESF 116 (632)
Q Consensus 92 ~Ge~~~ivG~sGsGKSTLl~ll~~~ 116 (632)
++.+++|+|++|+|||||++.|.+.
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4458999999999999999999754
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0028 Score=61.57 Aligned_cols=29 Identities=21% Similarity=0.284 Sum_probs=25.5
Q ss_pred cccEEEeeEEEEEecCCCChHHHHHhhhc
Q 047286 499 RGDIVFEHTVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 499 ~g~I~f~~~vaIVG~SGsGKSTL~~ll~r 527 (632)
.|.|.-++.++|+||+|||||||+..+.+
T Consensus 18 ~ggi~~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 18 QGGIETGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp TTSEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCCcCCeEEEEECCCCCcHHHHHHHHHH
Confidence 35677778889999999999999998887
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0035 Score=58.04 Aligned_cols=24 Identities=42% Similarity=0.484 Sum_probs=21.0
Q ss_pred eEEEEEecCCCChHHHHHhhhcCC
Q 047286 506 HTVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
..++|+|++||||||++++|.+.+
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 367999999999999999998754
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0043 Score=57.75 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=20.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHH
Q 047286 92 SGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 92 ~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
+|.+++|.|++||||||+.+.|.
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~ 24 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAM 24 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 36789999999999999999986
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0043 Score=60.34 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=22.5
Q ss_pred eeCCCEEEEEcCCCchHHHHHHHHH
Q 047286 90 VPSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 90 i~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
-++|.+++|+|++||||||+.+.|.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~ 37 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIA 37 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHH
Confidence 4678999999999999999999986
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=95.85 E-value=0.004 Score=56.83 Aligned_cols=20 Identities=35% Similarity=0.642 Sum_probs=18.4
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 047286 95 TVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~ 114 (632)
+++|+||+||||||+.+.|.
T Consensus 3 ~I~l~G~~GsGKsT~a~~L~ 22 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLLK 22 (179)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999883
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0036 Score=60.74 Aligned_cols=22 Identities=41% Similarity=0.445 Sum_probs=19.8
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
.++|+||+||||||+++.|.+.
T Consensus 11 ~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5799999999999999999853
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0031 Score=63.70 Aligned_cols=44 Identities=23% Similarity=0.237 Sum_probs=31.7
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHHhhcceEEEcccC
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQEKIGLVSKEP 135 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~~r~~i~~v~Q~~ 135 (632)
++++ +|++++++|+||+||||++..|++.. .+ ...++.++..++
T Consensus 93 i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~--~~--~~~~v~l~~~d~ 136 (295)
T 1ls1_A 93 PVLK--DRNLWFLVGLQGSGKTTTAAKLALYY--KG--KGRRPLLVAADT 136 (295)
T ss_dssp CCCC--SSEEEEEECCTTTTHHHHHHHHHHHH--HH--TTCCEEEEECCS
T ss_pred eecC--CCeEEEEECCCCCCHHHHHHHHHHHH--HH--cCCeEEEecCCc
Confidence 6666 89999999999999999999887431 11 124566665554
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0043 Score=56.42 Aligned_cols=23 Identities=35% Similarity=0.570 Sum_probs=20.3
Q ss_pred EEEEEcCCCchHHHHHHHHHhCC
Q 047286 95 TVALVGQSGSGKSTVINLVESFR 117 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~~~ 117 (632)
.++|+|++|+|||||++.+.+..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998543
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0041 Score=58.05 Aligned_cols=24 Identities=17% Similarity=0.396 Sum_probs=21.8
Q ss_pred eCCCEEEEEcCCCchHHHHHHHHH
Q 047286 91 PSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 91 ~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
+++.++.|+|++||||||+.+.|.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~ 26 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALA 26 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 467899999999999999999985
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0076 Score=62.94 Aligned_cols=28 Identities=32% Similarity=0.456 Sum_probs=23.4
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHH
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
..+++.+ .+++|+|||||||||++..|.
T Consensus 19 ~~i~f~~-gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 19 SRIKFEK-GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEECCS-EEEEEEECTTSSHHHHHHHHH
T ss_pred eEEecCC-CeEEEECCCCCCHHHHHHHHH
Confidence 4556656 599999999999999999885
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0045 Score=60.04 Aligned_cols=41 Identities=22% Similarity=0.186 Sum_probs=27.2
Q ss_pred CCHHHHHHHHHHHHHHhCC-ceEEEEecCchH--HhhcCeEEEE
Q 047286 189 VDAQSERIVQAAMVKLVTN-QTVVIVANCLIT--IRNADCIIMV 229 (632)
Q Consensus 189 LD~~~~~~i~~~l~~~~~~-~tviiitH~~~~--~~~aD~i~vl 229 (632)
-+|..++.+.+.-+++.+. ..+|+.-.+... +..+|--++|
T Consensus 109 ~~~~vr~~l~~~qr~~a~~~~~~V~~GRd~gt~V~pda~lkifl 152 (233)
T 3r20_A 109 AVPAVRTRLVDIQRKLATEGGRVVVEGRDIGTVVLPDADVKIFL 152 (233)
T ss_dssp TCHHHHHHHHHHHHHHHTSSSCEEEEESSCCCCCCTTCSEEEEE
T ss_pred cchHHHHHHHHHHHHHHHhcCcEEEecccceeEEcCCCCEEEEE
Confidence 4677777777777777665 678888877753 3456644444
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0047 Score=57.12 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=19.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHH
Q 047286 93 GTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 93 Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
-.+++|+|++|||||||++.|.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~ 27 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLI 27 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHH
Confidence 3589999999999999999876
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0042 Score=58.08 Aligned_cols=19 Identities=37% Similarity=0.656 Sum_probs=17.2
Q ss_pred EEEEcCCCchHHHHHHHHH
Q 047286 96 VALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 96 ~~ivG~sGsGKSTLl~ll~ 114 (632)
+.|+||||||||||++.|.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~ 22 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLF 22 (186)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999999774
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0034 Score=62.72 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=21.8
Q ss_pred EEEEecCCCChHHHHHhhhcCCCh
Q 047286 508 VALVGENGNGKSTVISLAERFHNP 531 (632)
Q Consensus 508 vaIVG~SGsGKSTL~~ll~r~y~~ 531 (632)
++|+||+|||||||+++|.+.+.+
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~ 70 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGL 70 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTC
T ss_pred EEEECCCCCcHHHHHHHHHHHcCC
Confidence 699999999999999999987654
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0044 Score=59.35 Aligned_cols=22 Identities=45% Similarity=0.545 Sum_probs=20.1
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
.|+|+|++||||||+++.|..+
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~l 27 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFADL 27 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHc
Confidence 6899999999999999999873
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0022 Score=66.29 Aligned_cols=46 Identities=20% Similarity=0.387 Sum_probs=33.5
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHHhhcceEEEcccC
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQEKIGLVSKEP 135 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~~r~~i~~v~Q~~ 135 (632)
+++++++|.+++|+|++|+|||||++.|.+... ....+++++..+|
T Consensus 49 l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~----~~~~~v~v~~~d~ 94 (341)
T 2p67_A 49 IMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI----REGLKVAVIAVDP 94 (341)
T ss_dssp HGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHH----HTTCCEEEEEECC
T ss_pred CCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHH----hcCCeEEEEeecC
Confidence 345567899999999999999999998863211 1134577776665
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0045 Score=57.48 Aligned_cols=21 Identities=33% Similarity=0.480 Sum_probs=19.0
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
.+.|+|++||||||+.+.|..
T Consensus 7 ~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999998865
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.002 Score=70.67 Aligned_cols=26 Identities=31% Similarity=0.271 Sum_probs=22.6
Q ss_pred eEEEEEecCCCChHHHHHhhhcCCCh
Q 047286 506 HTVALVGENGNGKSTVISLAERFHNP 531 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r~y~~ 531 (632)
.+++|+|+||||||||+++|.+.+.|
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCChHHHHHHHHHHhhcc
Confidence 46799999999999999999987654
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0029 Score=60.45 Aligned_cols=28 Identities=18% Similarity=0.183 Sum_probs=23.3
Q ss_pred ccEEEeeEEEEEecCCCChHHHHHhhhc
Q 047286 500 GDIVFEHTVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 500 g~I~f~~~vaIVG~SGsGKSTL~~ll~r 527 (632)
|.+..++.++|+||+||||||++..+.+
T Consensus 15 Ggi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 15 GGFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SSBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3455556779999999999999998876
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0044 Score=61.06 Aligned_cols=22 Identities=14% Similarity=0.126 Sum_probs=19.3
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
.+.|+||||||||||++.|.+-
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 4789999999999999988753
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0048 Score=56.78 Aligned_cols=21 Identities=29% Similarity=0.252 Sum_probs=19.3
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
.+.|+|++||||||+++.|..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 578999999999999999886
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0061 Score=56.55 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHH
Q 047286 92 SGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 92 ~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
.+..+.|+|++||||||+.+.|.
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 36789999999999999999985
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0049 Score=57.20 Aligned_cols=21 Identities=33% Similarity=0.464 Sum_probs=19.3
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
.++|+|++||||||+.+.|..
T Consensus 6 ~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999974
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0052 Score=56.86 Aligned_cols=22 Identities=32% Similarity=0.446 Sum_probs=20.1
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
+++|+|++|+|||||++.|.+-
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999998873
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0046 Score=56.91 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=19.5
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
.+.|+|++||||||+.+.|.+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999998763
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0031 Score=65.25 Aligned_cols=29 Identities=14% Similarity=0.302 Sum_probs=27.2
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHH
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
+++.+.+|+.++|+||+|+|||||+++|.
T Consensus 167 ~~~pi~rGQr~~IvG~sG~GKTtLl~~Ia 195 (422)
T 3ice_A 167 LASPIGRGQRGLIVAPPKAGKTMLLQNIA 195 (422)
T ss_dssp HHSCCBTTCEEEEECCSSSSHHHHHHHHH
T ss_pred eeeeecCCcEEEEecCCCCChhHHHHHHH
Confidence 67789999999999999999999999886
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=95.62 E-value=0.0062 Score=57.37 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=22.0
Q ss_pred eCCCEEEEEcCCCchHHHHHHHHH
Q 047286 91 PSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 91 ~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
.+|.+++|.|+.||||||+.+.|.
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~ 25 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIM 25 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHH
Confidence 367899999999999999999996
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0059 Score=63.13 Aligned_cols=25 Identities=36% Similarity=0.505 Sum_probs=23.4
Q ss_pred eeCCCEEEEEcCCCchHHHHHHHHH
Q 047286 90 VPSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 90 i~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
+++|+++.|.||+|||||||+..+.
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la 82 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAI 82 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHH
Confidence 7899999999999999999998775
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=95.55 E-value=0.0061 Score=58.30 Aligned_cols=24 Identities=50% Similarity=0.516 Sum_probs=21.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHh
Q 047286 92 SGTTVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 92 ~Ge~~~ivG~sGsGKSTLl~ll~~ 115 (632)
++-+++|.|++||||||+.+.|..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999974
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=95.55 E-value=0.0056 Score=56.95 Aligned_cols=22 Identities=32% Similarity=0.344 Sum_probs=19.7
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
.+.|+|++||||||+++.|...
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5799999999999999988763
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0057 Score=59.48 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=20.8
Q ss_pred EEEEEecCCCChHHHHHhhhcCC
Q 047286 507 TVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
+|+|||++|+|||||++.|.+-.
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 68999999999999999988753
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.52 E-value=0.006 Score=56.75 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=20.1
Q ss_pred EEEEEecCCCChHHHHHhhhcCC
Q 047286 507 TVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
.|.|+|++||||||+++.|..-+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57999999999999999887643
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=95.51 E-value=0.0067 Score=57.07 Aligned_cols=20 Identities=35% Similarity=0.630 Sum_probs=18.8
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 047286 95 TVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~ 114 (632)
+++|.|++||||||+.+.|.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~ 21 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEIS 21 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHH
Confidence 68999999999999999996
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=95.50 E-value=0.0064 Score=56.22 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=21.6
Q ss_pred eCCCEEEEEcCCCchHHHHHHHHH
Q 047286 91 PSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 91 ~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
.++..+.|+|++||||||+.+.|.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHH
Confidence 457789999999999999999986
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=95.48 E-value=0.0042 Score=59.26 Aligned_cols=25 Identities=32% Similarity=0.244 Sum_probs=22.0
Q ss_pred eEEEEEecCCCChHHHHHhhhcCCC
Q 047286 506 HTVALVGENGNGKSTVISLAERFHN 530 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r~y~ 530 (632)
..+.|+|++||||||+++.|.+.+.
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3679999999999999999987665
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=95.47 E-value=0.007 Score=57.46 Aligned_cols=26 Identities=27% Similarity=0.519 Sum_probs=21.7
Q ss_pred cEEEe-eEEEEEecCCCChHHHHHhhh
Q 047286 501 DIVFE-HTVALVGENGNGKSTVISLAE 526 (632)
Q Consensus 501 ~I~f~-~~vaIVG~SGsGKSTL~~ll~ 526 (632)
.|.|. +..+|+||+|||||||+..|.
T Consensus 18 ~i~f~~~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 18 VVEFKEGINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEECCSEEEEEECCTTSSHHHHHHHHH
T ss_pred EEEeCCCeEEEEcCCCCCHHHHHHHHH
Confidence 46666 488999999999999998664
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0072 Score=56.46 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=21.7
Q ss_pred eCCCEEEEEcCCCchHHHHHHHHH
Q 047286 91 PSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 91 ~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
.++.+++|+|++||||||+.+.|.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHH
Confidence 457799999999999999999986
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0057 Score=63.31 Aligned_cols=23 Identities=39% Similarity=0.527 Sum_probs=20.7
Q ss_pred EEEEEecCCCChHHHHHhhhcCC
Q 047286 507 TVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
+|+|+|++|||||||++.|.+.+
T Consensus 76 ~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 76 RVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 57999999999999999998753
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0053 Score=60.27 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=20.7
Q ss_pred EEEEecCCCChHHHHHhhhcCCC
Q 047286 508 VALVGENGNGKSTVISLAERFHN 530 (632)
Q Consensus 508 vaIVG~SGsGKSTL~~ll~r~y~ 530 (632)
+.|+||+|||||||++++.+...
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 68999999999999999998654
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.45 E-value=0.0071 Score=65.53 Aligned_cols=28 Identities=36% Similarity=0.618 Sum_probs=24.8
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHh
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~ 115 (632)
+++++++| +.|+||+|+|||||+++|.+
T Consensus 59 lg~~ip~G--vLL~GppGtGKTtLaraIa~ 86 (499)
T 2dhr_A 59 MGARIPKG--VLLVGPPGVGKTHLARAVAG 86 (499)
T ss_dssp TSCCCCSE--EEEECSSSSSHHHHHHHHHH
T ss_pred ccCCCCce--EEEECCCCCCHHHHHHHHHH
Confidence 56678888 99999999999999999974
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0038 Score=59.40 Aligned_cols=20 Identities=30% Similarity=0.604 Sum_probs=18.7
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 047286 95 TVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~ 114 (632)
+++|.|++||||||+++.|.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~ 21 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLS 21 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 68999999999999999886
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0074 Score=57.23 Aligned_cols=24 Identities=33% Similarity=0.416 Sum_probs=22.0
Q ss_pred eCCCEEEEEcCCCchHHHHHHHHH
Q 047286 91 PSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 91 ~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
.+|.+++|.|+.||||||+.+.|.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~ 31 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLV 31 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHH
Confidence 468899999999999999999985
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0049 Score=60.70 Aligned_cols=25 Identities=32% Similarity=0.489 Sum_probs=22.4
Q ss_pred eeCCCEEEEEcCCCchHHHHHHHHH
Q 047286 90 VPSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 90 i~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
.+++..+.|+|++||||||+.+.|.
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~ 53 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQ 53 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHH
Confidence 4567899999999999999999986
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.43 E-value=0.0073 Score=56.78 Aligned_cols=22 Identities=41% Similarity=0.620 Sum_probs=20.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHH
Q 047286 93 GTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 93 Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
..+++|+|++||||||+.+.|.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La 29 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLR 29 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999997
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.41 E-value=0.0067 Score=57.06 Aligned_cols=22 Identities=32% Similarity=0.521 Sum_probs=20.0
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
.+||+|.+||||||+.+.|...
T Consensus 14 iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 6899999999999999988765
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.41 E-value=0.0078 Score=55.34 Aligned_cols=21 Identities=33% Similarity=0.360 Sum_probs=19.2
Q ss_pred CEEEEEcCCCchHHHHHHHHH
Q 047286 94 TTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 94 e~~~ivG~sGsGKSTLl~ll~ 114 (632)
.++.|.|++||||||+.+.|.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~ 23 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFI 23 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHH
Confidence 468999999999999999987
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=95.38 E-value=0.0072 Score=59.54 Aligned_cols=21 Identities=19% Similarity=0.237 Sum_probs=19.0
Q ss_pred CEEEEEcCCCchHHHHHHHHH
Q 047286 94 TTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 94 e~~~ivG~sGsGKSTLl~ll~ 114 (632)
.+++|+||+|||||||.+.|.
T Consensus 2 ~li~I~G~~GSGKSTla~~La 22 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIA 22 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHH
Confidence 368999999999999999886
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.38 E-value=0.008 Score=55.59 Aligned_cols=21 Identities=38% Similarity=0.681 Sum_probs=19.4
Q ss_pred EEEEEcCCCchHHHHHHHHHh
Q 047286 95 TVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~ 115 (632)
.++++|++|+|||||++.+.+
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999974
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=95.37 E-value=0.0075 Score=56.80 Aligned_cols=23 Identities=17% Similarity=0.107 Sum_probs=20.8
Q ss_pred EEEEEecCCCChHHHHHhhhcCC
Q 047286 507 TVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
.++|+|++||||||+++.|...+
T Consensus 6 ~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 57999999999999999998765
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=95.36 E-value=0.0078 Score=56.95 Aligned_cols=23 Identities=39% Similarity=0.634 Sum_probs=21.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHH
Q 047286 92 SGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 92 ~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
+|.+++|.|++||||||+.+.|.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~ 25 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLK 25 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHH
Confidence 46789999999999999999986
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=95.35 E-value=0.005 Score=64.58 Aligned_cols=29 Identities=24% Similarity=0.225 Sum_probs=24.5
Q ss_pred cccEEEeeEEEEEecCCCChHHHHHhhhc
Q 047286 499 RGDIVFEHTVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 499 ~g~I~f~~~vaIVG~SGsGKSTL~~ll~r 527 (632)
-|.+.-+.++||||++|+|||||++.|.+
T Consensus 14 lg~v~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 14 WGRPGNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp CSSSSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHC
Confidence 34555556889999999999999999998
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=95.35 E-value=0.007 Score=57.72 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=18.8
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
.++|.|++||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999854
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=95.34 E-value=0.0071 Score=61.23 Aligned_cols=22 Identities=32% Similarity=0.366 Sum_probs=20.4
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
+|+|||++|+|||||++.|.+.
T Consensus 10 ~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 10 FIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 6899999999999999999875
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=95.34 E-value=0.0076 Score=56.33 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=19.6
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
.++|+|++||||||+++.|...
T Consensus 11 ~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 11 IIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5799999999999999998753
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.34 E-value=0.0075 Score=56.49 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=19.9
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
.|+|+|++||||||+++.|...
T Consensus 14 ~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988764
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=95.33 E-value=0.0084 Score=56.94 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=22.1
Q ss_pred eeCCCEEEEEcCCCchHHHHHHHHH
Q 047286 90 VPSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 90 i~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
.++|.+++|.|+.||||||+.+.|.
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~ 30 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLV 30 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHH
Confidence 3568899999999999999999985
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=95.33 E-value=0.0076 Score=55.34 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=19.6
Q ss_pred EEEEEecCCCChHHHHHhhhcCC
Q 047286 507 TVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
.++|+|++||||||++..|.+.+
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 57999999999999998777643
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=95.30 E-value=0.0081 Score=55.23 Aligned_cols=20 Identities=35% Similarity=0.611 Sum_probs=18.6
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 047286 95 TVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~ 114 (632)
.+.|+|++||||||+.+.|.
T Consensus 6 ~i~i~G~~GsGKsTla~~La 25 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALA 25 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 58999999999999999986
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=95.29 E-value=0.0069 Score=60.88 Aligned_cols=24 Identities=38% Similarity=0.451 Sum_probs=21.2
Q ss_pred eCCCEEEEEcCCCchHHHHHHHHH
Q 047286 91 PSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 91 ~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
.++..+.|.||+||||||+.+.|.
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~ 54 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIF 54 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 346789999999999999999885
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=95.29 E-value=0.014 Score=62.12 Aligned_cols=45 Identities=11% Similarity=0.167 Sum_probs=40.5
Q ss_pred cCCCCHHHHHHHHHHHHHHhC-CceEEEEecCchHHhhcCeEEEEe
Q 047286 186 TNAVDAQSERIVQAAMVKLVT-NQTVVIVANCLITIRNADCIIMVS 230 (632)
Q Consensus 186 ts~LD~~~~~~i~~~l~~~~~-~~tviiitH~~~~~~~aD~i~vl~ 230 (632)
+++||+..+..+.+.|+++.. +.++|++||+...+..||+++++.
T Consensus 365 ~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 365 DAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVY 410 (430)
T ss_dssp TTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 899999999999999998854 679999999988777899999986
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=95.29 E-value=0.0081 Score=55.98 Aligned_cols=21 Identities=19% Similarity=0.339 Sum_probs=19.0
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
.+.|+|++||||||+++.|..
T Consensus 7 ~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999998875
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=95.28 E-value=0.0085 Score=55.49 Aligned_cols=21 Identities=33% Similarity=0.673 Sum_probs=19.2
Q ss_pred EEEEEcCCCchHHHHHHHHHh
Q 047286 95 TVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~ 115 (632)
.++|+|++|+|||||++.+.+
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999974
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=95.26 E-value=0.0072 Score=68.93 Aligned_cols=75 Identities=15% Similarity=0.101 Sum_probs=43.2
Q ss_pred cEEE-eeEEEEEecCCCChHHHHHhhhcCCC-hhhhcHHHHHHHHHHHHhcCCCccCcccc--cC-CCCCChHHHHHHHH
Q 047286 501 DIVF-EHTVALVGENGNGKSTVISLAERFHN-PEQVIYSWIIIKCTNFIASLPQGSDLNVG--ER-GLQLSGGLKQRIAR 575 (632)
Q Consensus 501 ~I~f-~~~vaIVG~SGsGKSTL~~ll~r~y~-~~~~~~~~~~~~~~~~i~~lp~g~dt~vg--e~-G~~LSgGQrQRiai 575 (632)
+|.| ++.++|+||+||||||+++++.++.. ++.... +-.....+.-.+ .+-+.++ ++ -..+|+|++|++.+
T Consensus 571 disl~g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~---vpa~~~~i~~v~-~i~~~~~~~d~l~~g~S~~~~e~~~l 646 (765)
T 1ewq_A 571 DLEMAHELVLITGPNMAGKSTFLRQTALIALLAQVGSF---VPAEEAHLPLFD-GIYTRIGASDDLAGGKSTFMVEMEEV 646 (765)
T ss_dssp EEEESSCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCC---BSSSEEEECCCS-EEEEECCC------CCSHHHHHHHHH
T ss_pred eccCCCcEEEEECCCCCChHHHHHHHHhhhhhcccCce---eehhccceeeHH-HhhccCCHHHHHHhcccHHHHHHHHH
Confidence 5666 67999999999999999999998653 211000 000000000011 1112222 11 13589999999999
Q ss_pred HHHH
Q 047286 576 TRAR 579 (632)
Q Consensus 576 ARA~ 579 (632)
|+++
T Consensus 647 a~il 650 (765)
T 1ewq_A 647 ALIL 650 (765)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9985
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=95.25 E-value=0.0074 Score=57.61 Aligned_cols=23 Identities=26% Similarity=0.206 Sum_probs=19.7
Q ss_pred EEEEEecCCCChHHHHHhhhcCC
Q 047286 507 TVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
.++|+|++||||||+++.|..-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999986543
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.25 E-value=0.0081 Score=55.89 Aligned_cols=22 Identities=18% Similarity=0.443 Sum_probs=19.9
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
.++|+|++||||||+.+.|...
T Consensus 12 ~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 12 NILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5799999999999999988765
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=95.25 E-value=0.021 Score=59.61 Aligned_cols=46 Identities=20% Similarity=0.166 Sum_probs=40.9
Q ss_pred ccCCCCHHHHHHHHHHHHHHhCCceEEEEecCchHHhhcCeEEEEe
Q 047286 185 ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRNADCIIMVS 230 (632)
Q Consensus 185 ~ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~aD~i~vl~ 230 (632)
+|++||+..+..+.+.|.++.++.+++++||+++....||++++|+
T Consensus 314 p~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~~~l~ 359 (371)
T 3auy_A 314 PTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIINVK 359 (371)
T ss_dssp TTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEEEEEE
T ss_pred CCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEEEEEE
Confidence 4899999999999999998766679999999988656799999997
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.24 E-value=0.0069 Score=60.42 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=20.8
Q ss_pred EEEEecCCCChHHHHHhhhcCCC
Q 047286 508 VALVGENGNGKSTVISLAERFHN 530 (632)
Q Consensus 508 vaIVG~SGsGKSTL~~ll~r~y~ 530 (632)
+.|+||+|||||||+++|.+...
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCcChHHHHHHHHHHHcC
Confidence 79999999999999999998654
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.22 E-value=0.0083 Score=54.59 Aligned_cols=21 Identities=48% Similarity=0.485 Sum_probs=19.2
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
.|+|+|++||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999998876
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.19 E-value=0.0098 Score=55.39 Aligned_cols=22 Identities=27% Similarity=0.370 Sum_probs=20.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHH
Q 047286 93 GTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 93 Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
+.+++|.|++||||||+.+.|.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 5689999999999999999885
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=95.18 E-value=0.0086 Score=56.52 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=20.0
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
.++|.|++||||||+.+.|.+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999999774
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=95.17 E-value=0.0081 Score=62.67 Aligned_cols=24 Identities=17% Similarity=0.159 Sum_probs=21.1
Q ss_pred eEEEEEecCCCChHHHHHhhhcCC
Q 047286 506 HTVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
+.++|+||+|||||||+++|.+.+
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 366999999999999999998753
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=95.16 E-value=0.0092 Score=59.57 Aligned_cols=28 Identities=29% Similarity=0.277 Sum_probs=23.8
Q ss_pred ccEEEeeEEEEEecCCCChHHHHHhhhc
Q 047286 500 GDIVFEHTVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 500 g~I~f~~~vaIVG~SGsGKSTL~~ll~r 527 (632)
|.+..++.++|+||+|||||||+..+.+
T Consensus 25 ggl~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 25 PNMVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TTEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 4577777889999999999999987765
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=95.16 E-value=0.0091 Score=59.48 Aligned_cols=21 Identities=48% Similarity=0.561 Sum_probs=19.2
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
+|++||++|+|||||++.|++
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~ 30 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFL 30 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999998765
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=95.15 E-value=0.0059 Score=61.67 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=22.7
Q ss_pred eEEEEEecCCCChHHHHHhhhcCCCh
Q 047286 506 HTVALVGENGNGKSTVISLAERFHNP 531 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r~y~~ 531 (632)
.+++|||++||||||++..|.+.+.+
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 36799999999999999999887765
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.14 E-value=0.009 Score=55.63 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=19.1
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
.++|.|++||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999998876
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=95.12 E-value=0.01 Score=53.47 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=19.7
Q ss_pred EEEEEecCCCChHHHHHhhhcCC
Q 047286 507 TVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
+++++|++|+|||||++.+.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 58999999999999999887643
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=95.12 E-value=0.0085 Score=54.75 Aligned_cols=21 Identities=33% Similarity=0.436 Sum_probs=19.0
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
.+.|+|++||||||+++.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999998875
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.11 E-value=0.0091 Score=55.93 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=21.6
Q ss_pred eCCCEEEEEcCCCchHHHHHHHHH
Q 047286 91 PSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 91 ~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
+++.+++|+|++||||||+.+.|.
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~ 33 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLV 33 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999999986
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=95.11 E-value=0.0091 Score=55.14 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=19.3
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
.+.|+|++||||||+++.|..-
T Consensus 13 ~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 13 NILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEeCCCCCHHHHHHHHHHH
Confidence 4689999999999999998743
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.11 E-value=0.01 Score=55.13 Aligned_cols=20 Identities=40% Similarity=0.513 Sum_probs=18.6
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 047286 95 TVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~ 114 (632)
++.|.|++||||||+.+.|.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~ 22 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVK 22 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999986
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.09 E-value=0.0096 Score=55.35 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.0
Q ss_pred EEEEEecCCCChHHHHHhhhcCC
Q 047286 507 TVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
.+.|+|++||||||+++.|.+..
T Consensus 15 ~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 15 VVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 57999999999999999887643
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=95.09 E-value=0.0092 Score=58.60 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=19.8
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
.|||.|++||||||+.+.|...
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988763
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.08 E-value=0.0097 Score=55.42 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=19.4
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
.|+|+|++||||||+.+.|..-
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988653
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=95.08 E-value=0.009 Score=55.34 Aligned_cols=21 Identities=38% Similarity=0.482 Sum_probs=19.0
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
.|+|+|++||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998875
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=95.08 E-value=0.01 Score=55.16 Aligned_cols=22 Identities=32% Similarity=0.347 Sum_probs=19.7
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
.++|+|++||||||+++.|...
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988753
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=95.07 E-value=0.008 Score=55.51 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=16.6
Q ss_pred eCCCEEEEEcCCCchHHHHHHHHH
Q 047286 91 PSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 91 ~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
.++.++.|.|++||||||+.+.|.
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 357789999999999999999985
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=95.06 E-value=0.01 Score=53.47 Aligned_cols=21 Identities=29% Similarity=0.442 Sum_probs=19.1
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
+++++|++|+|||||++.+.+
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 689999999999999998765
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=95.05 E-value=0.0061 Score=61.36 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=16.1
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
.|||.|+|||||||+++.|..
T Consensus 7 iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp EEEEESCC---CCTHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999998775
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=95.05 E-value=0.01 Score=56.20 Aligned_cols=21 Identities=29% Similarity=0.313 Sum_probs=19.2
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
.|+|+|++||||||+++.|..
T Consensus 12 ~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 12 FIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 579999999999999998875
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=95.02 E-value=0.0098 Score=56.06 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=19.9
Q ss_pred EEEEEecCCCChHHHHHhhhcCC
Q 047286 507 TVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
.|+|+|++||||||+.+.|..-+
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 57999999999999999887543
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=94.99 E-value=0.0074 Score=59.37 Aligned_cols=23 Identities=26% Similarity=0.523 Sum_probs=20.0
Q ss_pred EEEEEecCCCChHHHHHhhhcCC
Q 047286 507 TVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
.+.|+|++||||||+++.|.+.+
T Consensus 34 ~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 34 AILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp EEEEESCGGGTTHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 56999999999999999887644
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=94.97 E-value=0.01 Score=63.49 Aligned_cols=23 Identities=35% Similarity=0.395 Sum_probs=21.0
Q ss_pred EEEEEecCCCChHHHHHhhhcCC
Q 047286 507 TVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
+++|||++|+|||||++.|.+..
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred eEEEECCCCCCHHHHHHHHhCCc
Confidence 58999999999999999998864
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=94.94 E-value=0.012 Score=52.90 Aligned_cols=21 Identities=29% Similarity=0.408 Sum_probs=18.6
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
+|+++|++|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999987764
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=94.93 E-value=0.011 Score=61.44 Aligned_cols=30 Identities=33% Similarity=0.607 Sum_probs=24.5
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCC
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRF 118 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~ 118 (632)
++++++ .++|+|++|||||||++.|.|..+
T Consensus 30 i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~ 59 (360)
T 3t34_A 30 LWDSLP---AIAVVGGQSSGKSSVLESIVGKDF 59 (360)
T ss_dssp --CCCC---EEEEECBTTSSHHHHHHHHHTSCC
T ss_pred ccccCC---EEEEECCCCCcHHHHHHHHhCCCc
Confidence 666777 899999999999999999987544
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=94.93 E-value=0.012 Score=52.61 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=18.8
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
+++++|++|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~ 25 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999997764
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=94.93 E-value=0.011 Score=61.47 Aligned_cols=23 Identities=17% Similarity=0.447 Sum_probs=20.5
Q ss_pred EEEEEecCCCChHHHHHhhhcCC
Q 047286 507 TVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
+|+|||++|||||||++.|.+..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999864
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=94.92 E-value=0.012 Score=58.49 Aligned_cols=23 Identities=39% Similarity=0.557 Sum_probs=20.9
Q ss_pred EEEEEecCCCChHHHHHhhhcCC
Q 047286 507 TVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
+++|+|++|||||||++.|.+..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998764
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=94.92 E-value=0.014 Score=55.77 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=21.1
Q ss_pred eCCCEEEEEcCCCchHHHHHHHHH
Q 047286 91 PSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 91 ~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
++|-+++|+|+.||||||+.+.|.
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La 25 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQ 25 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 357789999999999999999986
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=94.91 E-value=0.012 Score=58.94 Aligned_cols=21 Identities=33% Similarity=0.525 Sum_probs=19.4
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
.|+|+|++||||||+++.|..
T Consensus 77 iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999875
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.90 E-value=0.012 Score=53.34 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=19.7
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
+|+|+|++|+|||||++.+.+-
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 6899999999999999988764
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.90 E-value=0.012 Score=54.75 Aligned_cols=23 Identities=17% Similarity=0.457 Sum_probs=20.2
Q ss_pred EEEEEecCCCChHHHHHhhhcCC
Q 047286 507 TVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
+++++|++|+|||||++.+.+-.
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999887643
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.90 E-value=0.016 Score=56.17 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=20.9
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCC
Q 047286 95 TVALVGQSGSGKSTVINLVESFRF 118 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~~~~ 118 (632)
.++|+|++|+|||||++.|.+...
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc
Confidence 579999999999999999986544
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=94.90 E-value=0.012 Score=55.76 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=20.2
Q ss_pred EEEEEecCCCChHHHHHhhhcCC
Q 047286 507 TVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
.|+|.|++||||||+++.|..-+
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 57999999999999999987643
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=94.89 E-value=0.01 Score=61.05 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=20.9
Q ss_pred EEEEEecCCCChHHHHHhhhcCC
Q 047286 507 TVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
.++|+||+|+|||||++++.+..
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHh
Confidence 57999999999999999998865
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.88 E-value=0.013 Score=52.97 Aligned_cols=21 Identities=33% Similarity=0.501 Sum_probs=19.1
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
+|+++|++|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999988775
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=94.88 E-value=0.013 Score=53.65 Aligned_cols=39 Identities=23% Similarity=0.235 Sum_probs=25.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCCcHHhhcceEEEcccCc
Q 047286 94 TTVALVGQSGSGKSTVINLVESFRFYAPEAEQEKIGLVSKEPI 136 (632)
Q Consensus 94 e~~~ivG~sGsGKSTLl~ll~~~~~~~~~~~r~~i~~v~Q~~~ 136 (632)
.+++|+|++|||||||+..|... .. ....+++.+..++.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~--l~--~~g~~v~~ik~~~~ 43 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAA--AV--REGWRVGTVKHHGH 43 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH--HH--HTTCCEEEEECCC-
T ss_pred EEEEEECCCCCCHHHHHHHHHHh--hH--hcCCeeeEEEeCCC
Confidence 47899999999999999877521 00 11124777766653
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=94.86 E-value=0.013 Score=52.92 Aligned_cols=22 Identities=45% Similarity=0.579 Sum_probs=19.6
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
+++|+|++|+|||||++.+.+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999988754
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=94.86 E-value=0.013 Score=52.86 Aligned_cols=21 Identities=29% Similarity=0.521 Sum_probs=18.9
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
+|+++|++|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 589999999999999997764
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=94.85 E-value=0.013 Score=54.36 Aligned_cols=22 Identities=32% Similarity=0.383 Sum_probs=19.6
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
+++++|++|+|||||++.|.+-
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999988753
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=94.84 E-value=0.013 Score=55.67 Aligned_cols=21 Identities=29% Similarity=0.253 Sum_probs=19.2
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
.|+|+|++||||||+++.|..
T Consensus 11 ~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 11 LIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999998875
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.84 E-value=0.01 Score=57.53 Aligned_cols=25 Identities=24% Similarity=0.478 Sum_probs=21.8
Q ss_pred EeeCCCEEEEEcCCCchHHHHHHHH
Q 047286 89 HVPSGTTVALVGQSGSGKSTVINLV 113 (632)
Q Consensus 89 ~i~~Ge~~~ivG~sGsGKSTLl~ll 113 (632)
.+.+|+.++++||+||||||++.+.
T Consensus 72 ~i~~g~~~~i~g~TGsGKTt~~~~~ 96 (235)
T 3llm_A 72 AISQNSVVIIRGATGCGKTTQVPQF 96 (235)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHH
T ss_pred HHhcCCEEEEEeCCCCCcHHhHHHH
Confidence 3567999999999999999988865
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.84 E-value=0.013 Score=52.43 Aligned_cols=22 Identities=27% Similarity=0.372 Sum_probs=19.5
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
+++++|++|+|||||++.+.+-
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999987754
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=94.83 E-value=0.013 Score=52.73 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=19.0
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
+++++|++|+|||||++.+.+
T Consensus 5 ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999998764
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=94.81 E-value=0.015 Score=56.05 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=20.5
Q ss_pred eCCCEEEEEcCCCchHHHHHHHHH
Q 047286 91 PSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 91 ~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
.++.+++|+|++||||||+.+.|.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999999986
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=94.80 E-value=0.0051 Score=68.69 Aligned_cols=31 Identities=23% Similarity=0.367 Sum_probs=28.2
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhC
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESF 116 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~ 116 (632)
+++.+++|+.+.|+||||+|||||+++|.+.
T Consensus 53 l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 53 IKTAANQKRHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHHHHHTTCCEEEECCTTSSHHHHHHHHHHT
T ss_pred ccccccCCCEEEEEeCCCCCHHHHHHHHhcc
Confidence 6777889999999999999999999999854
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=94.80 E-value=0.012 Score=60.20 Aligned_cols=23 Identities=17% Similarity=0.322 Sum_probs=19.8
Q ss_pred EEEEEecCCCChHHHHHhhhcCC
Q 047286 507 TVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
.++|+||||||||||+..|..-+
T Consensus 9 lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcCcHHHHHHHHHHHc
Confidence 68999999999999998777543
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=94.80 E-value=0.013 Score=52.56 Aligned_cols=21 Identities=33% Similarity=0.390 Sum_probs=18.9
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
+|+++|++|+|||||++.+.+
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999997764
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=94.79 E-value=0.017 Score=54.38 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=21.2
Q ss_pred eCCCEEEEEcCCCchHHHHHHHHH
Q 047286 91 PSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 91 ~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
..+-+++|+|+.||||||+.+.|.
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La 41 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLA 41 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 345689999999999999999986
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=94.79 E-value=0.0094 Score=62.00 Aligned_cols=22 Identities=36% Similarity=0.454 Sum_probs=20.3
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
++||||++|+|||||+++|.+.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999886
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=94.77 E-value=0.013 Score=56.45 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=19.6
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
.+.|+|++||||||+++.|..-
T Consensus 9 ~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 9 RAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5799999999999999988743
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=94.77 E-value=0.014 Score=53.26 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=19.3
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
+++|+|++|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999877653
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=94.75 E-value=0.014 Score=52.71 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=19.5
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
+|+++|++|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999977654
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=94.75 E-value=0.015 Score=53.89 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=19.6
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
+++++|++|+|||||++.+.+-
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6799999999999999988764
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=94.73 E-value=0.014 Score=53.21 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=19.3
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
.++|.|+.||||||+.+.|..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999875
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.73 E-value=0.014 Score=56.74 Aligned_cols=21 Identities=33% Similarity=0.547 Sum_probs=19.4
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
.++|+|++||||||+.+.|.+
T Consensus 18 ~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 18 QIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp EEEEECSSCSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999999886
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=94.72 E-value=0.015 Score=63.94 Aligned_cols=24 Identities=25% Similarity=0.566 Sum_probs=22.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHh
Q 047286 92 SGTTVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 92 ~Ge~~~ivG~sGsGKSTLl~ll~~ 115 (632)
+|+.++|+||||+|||||+++|.+
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999999973
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=94.72 E-value=0.014 Score=52.70 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=19.0
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
+|+++|++|+|||||++.+.+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCE 28 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 689999999999999987764
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=94.71 E-value=0.014 Score=55.00 Aligned_cols=22 Identities=32% Similarity=0.342 Sum_probs=19.5
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
.|.|+|++||||||+++.|...
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5799999999999999988753
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=94.71 E-value=0.012 Score=60.36 Aligned_cols=25 Identities=40% Similarity=0.549 Sum_probs=21.3
Q ss_pred eeCCCE--EEEEcCCCchHHHHHHHHH
Q 047286 90 VPSGTT--VALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 90 i~~Ge~--~~ivG~sGsGKSTLl~ll~ 114 (632)
+++|+. ++|+|++||||||+.++|.
T Consensus 19 i~~g~~~~i~l~G~~G~GKTTl~~~la 45 (359)
T 2ga8_A 19 IEDNYRVCVILVGSPGSGKSTIAEELC 45 (359)
T ss_dssp TTTCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred hccCCeeEEEEECCCCCcHHHHHHHHH
Confidence 445566 8999999999999999886
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.69 E-value=0.014 Score=52.47 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=18.7
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
+|+++|++|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999987764
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=94.68 E-value=0.014 Score=53.22 Aligned_cols=21 Identities=24% Similarity=0.521 Sum_probs=18.8
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
+|+++|++|+|||||++.+.+
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~ 30 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVN 30 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999987764
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=94.68 E-value=0.013 Score=58.87 Aligned_cols=21 Identities=29% Similarity=0.382 Sum_probs=18.5
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
.+.|+|||||||||+++.|..
T Consensus 35 livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp EEEEECCTTSCTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999998864
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=94.67 E-value=0.015 Score=55.32 Aligned_cols=20 Identities=30% Similarity=0.542 Sum_probs=18.2
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 047286 95 TVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~ 114 (632)
.++|.||+||||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999985
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=94.67 E-value=0.015 Score=53.02 Aligned_cols=21 Identities=33% Similarity=0.553 Sum_probs=19.0
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
+|+++|++|+|||||++.+.+
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999998764
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=94.64 E-value=0.018 Score=53.32 Aligned_cols=25 Identities=16% Similarity=0.117 Sum_probs=22.0
Q ss_pred EEEEEecCCCChHHHHHhhhcCCCh
Q 047286 507 TVALVGENGNGKSTVISLAERFHNP 531 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y~~ 531 (632)
+|+|||++|+|||||++.+.+-+..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 6899999999999999998876554
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=94.63 E-value=0.015 Score=52.31 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=19.0
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
+|+++|++|+|||||++.+.+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999987764
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=94.63 E-value=0.015 Score=55.81 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=20.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHH
Q 047286 92 SGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 92 ~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
++.++.|+|++||||||+.+.|.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La 26 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIK 26 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45679999999999999999985
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=94.63 E-value=0.016 Score=53.41 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=19.7
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
+++|+|++|+|||||++.+.+-
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6799999999999999988764
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=94.62 E-value=0.016 Score=54.49 Aligned_cols=21 Identities=19% Similarity=0.518 Sum_probs=19.0
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
+++++|++|+|||||++.+.+
T Consensus 27 ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 27 KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEETTSSHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 579999999999999998865
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=94.61 E-value=0.011 Score=62.49 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=21.6
Q ss_pred eEEEEEecCCCChHHHHHhhhcC
Q 047286 506 HTVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
..++|||++|||||||++.|.+.
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcC
Confidence 47999999999999999999987
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.61 E-value=0.016 Score=52.91 Aligned_cols=21 Identities=24% Similarity=0.515 Sum_probs=19.2
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
+|+|+|++|+|||||++.+.+
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999998875
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.58 E-value=0.017 Score=53.21 Aligned_cols=22 Identities=32% Similarity=0.359 Sum_probs=19.4
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
+|+++|++|+|||||++.+.+-
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5899999999999999987763
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=94.58 E-value=0.019 Score=52.26 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=19.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHH
Q 047286 93 GTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 93 Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
-++++|.|+.||||||+.+.|.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHH
Confidence 4789999999999999999985
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=94.57 E-value=0.012 Score=56.86 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=21.7
Q ss_pred eEEEEEecCCCChHHHHHhhhcCCC
Q 047286 506 HTVALVGENGNGKSTVISLAERFHN 530 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r~y~ 530 (632)
..++|.|++||||||++++|...+.
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3689999999999999998887654
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=94.56 E-value=0.015 Score=55.74 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=19.2
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
.+.|+|++||||||+.+.|...
T Consensus 7 ~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 7 KVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999988753
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 632 | ||||
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 6e-34 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 3e-08 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 2e-32 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 4e-10 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 3e-31 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 3e-11 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 3e-27 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 7e-12 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 1e-26 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 1e-09 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 2e-25 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 4e-08 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 6e-13 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 2e-10 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 2e-10 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 3e-10 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 6e-10 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 2e-08 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 3e-08 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 1e-07 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 2e-07 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 3e-07 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 4e-07 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 1e-06 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 3e-06 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 3e-06 | |
| d3b60a2 | 319 | f.37.1.1 (A:10-328) Multidrug resistance ABC trans | 4e-04 | |
| d2hyda2 | 323 | f.37.1.1 (A:1-323) Putative multidrug export ATP-b | 4e-04 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 0.003 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 0.004 |
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 127 bits (320), Expect = 6e-34
Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 53/219 (24%)
Query: 89 HVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQ-----------------EKIGLV 131
+ G + +VG+SGSGKST+ L+ RFY PE Q ++G+V
Sbjct: 25 SIKQGEVIGIVGRSGSGKSTLTKLI--QRFYIPENGQVLIDGHDLALADPNWLRRQVGVV 82
Query: 132 SKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV------- 184
++ + L + I S E + A +LA A I +L G +T+V
Sbjct: 83 LQDNVLLNRSIIDN--ISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGL 140
Query: 185 -------------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLIT 219
AT+A+D +SE ++ M K+ +TV+I+A+ L T
Sbjct: 141 SGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLST 200
Query: 220 IRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQ 258
++NAD II++ KGKIVE+G H EL+ +PE YS L +LQ
Sbjct: 201 VKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 239
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 52.6 bits (126), Expect = 3e-08
Identities = 46/205 (22%), Positives = 68/205 (33%), Gaps = 86/205 (41%)
Query: 507 TVALVGENGNGKSTVISLAERFHNPEQ--------------------------------- 533
+ +VG +G+GKST+ L +RF+ PE
Sbjct: 31 VIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN 90
Query: 534 ------------------VIYSWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIAR 575
VIY+ + +FI+ L +G + VGE+G LSGG +QRIA
Sbjct: 91 RSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAI 150
Query: 576 TRA----RNYCGCGSPPYHY-------------------------------KNADITSVV 600
RA KNAD V+
Sbjct: 151 ARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVM 210
Query: 601 KNGVIAEKGRHDALMKITDGTYASL 625
+ G I E+G+H L+ + Y+ L
Sbjct: 211 EKGKIVEQGKHKELLSEPESLYSYL 235
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 123 bits (310), Expect = 2e-32
Identities = 73/221 (33%), Positives = 108/221 (48%), Gaps = 53/221 (23%)
Query: 89 HVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQ-----------------EKIGLV 131
+P+G TVALVG+SGSGKST+ +L+ RFY + ++ LV
Sbjct: 37 KIPAGKTVALVGRSGSGKSTIASLI--TRFYDIDEGHILMDGHDLREYTLASLRNQVALV 94
Query: 132 SKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV------- 184
S+ LF D + S E I A ++A A I+K+ GLDT++
Sbjct: 95 SQNV-HLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLL 153
Query: 185 -------------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLIT 219
AT+A+D +SER +QAA+ +L N+T +++A+ L T
Sbjct: 154 SGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLST 213
Query: 220 IRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQEG 260
I AD I++V G IVE+GTH EL+ G Y+QL ++Q G
Sbjct: 214 IEQADEIVVVEDGIIVERGTHSELLAQH-GVYAQLHKMQFG 253
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 58.3 bits (141), Expect = 4e-10
Identities = 49/212 (23%), Positives = 69/212 (32%), Gaps = 100/212 (47%)
Query: 507 TVALVGENGNGKSTVISLAERFHNP----------------------------------- 531
TVALVG +G+GKST+ SL RF++
Sbjct: 43 TVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFN 102
Query: 532 -----------------EQVIYSWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQR-- 572
EQ+ + + +FI + G D +GE G+ LSGG +QR
Sbjct: 103 DTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIA 162
Query: 573 IARTRARNYCGCGSPPYHY---------------------------------------KN 593
IAR R+ P +
Sbjct: 163 IARALLRD------SPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQ 216
Query: 594 ADITSVVKNGVIAEKGRHDALMKITDGTYASL 625
AD VV++G+I E+G H L+ G YA L
Sbjct: 217 ADEIVVVEDGIIVERGTHSELLA-QHGVYAQL 247
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 119 bits (301), Expect = 3e-31
Identities = 73/219 (33%), Positives = 103/219 (47%), Gaps = 54/219 (24%)
Query: 89 HVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEA-----------------EQEKIGLV 131
+ G TVA VG SG GKST+INL+ RFY + + +IGLV
Sbjct: 40 SIEKGETVAFVGMSGGGKSTLINLI--PRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLV 97
Query: 132 SKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV------- 184
++ + + I G+ A+DE + A ++ANA I LP G DT V
Sbjct: 98 QQDN--ILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKL 155
Query: 185 -------------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLIT 219
AT+A+D +SE I+Q A+ L ++T +IVA+ L T
Sbjct: 156 SGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLST 215
Query: 220 IRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQ 258
I +AD I+++ G IVE GTH ELI +GAY L +Q
Sbjct: 216 ITHADKIVVIENGHIVETGTHRELIAK-QGAYEHLYSIQ 253
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 61.7 bits (150), Expect = 3e-11
Identities = 52/205 (25%), Positives = 69/205 (33%), Gaps = 87/205 (42%)
Query: 507 TVALVGENGNGKSTVISLAERFHNP----------------------------------- 531
TVA VG +G GKST+I+L RF++
Sbjct: 46 TVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFS 105
Query: 532 ----------------EQVIYSWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQR--I 573
E+V+ + + +FI +LPQG D VGERG++LSGG KQR I
Sbjct: 106 DTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSI 165
Query: 574 ARTRARN---------YCGCGSPPYHY------------------------KNADITSVV 600
AR N +AD V+
Sbjct: 166 ARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVI 225
Query: 601 KNGVIAEKGRHDALMKITDGTYASL 625
+NG I E G H L+ G Y L
Sbjct: 226 ENGHIVETGTHRELIA-KQGAYEHL 249
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 108 bits (272), Expect = 3e-27
Identities = 55/219 (25%), Positives = 84/219 (38%), Gaps = 55/219 (25%)
Query: 89 HVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQ-----------------EKIGLV 131
+ G ALVG +GSGKSTV L+ Y P Q ++ V
Sbjct: 36 TLRPGEVTALVGPNGSGKSTVAALL--QNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAV 93
Query: 132 SKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV------- 184
+EP +F + Q + E I A + A I LP G DT V
Sbjct: 94 GQEP-QVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQL 152
Query: 185 -------------------------ATNAVDAQSERIVQAAMVKLV--TNQTVVIVANCL 217
AT+A+DA S+ V+ + + +++V+++ L
Sbjct: 153 SGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHL 212
Query: 218 ITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVR 256
+ AD I+ + G I E GTH +L+E G Y +V+
Sbjct: 213 SLVEQADHILFLEGGAIREGGTHQQLMEKK-GCYWAMVQ 250
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.8 bits (155), Expect = 7e-12
Identities = 48/247 (19%), Positives = 70/247 (28%), Gaps = 115/247 (46%)
Query: 493 MTPSTVRGDIVFEH-------------------------TVALVGENGNGKSTVISLAER 527
+TP + G + F+ ALVG NG+GKSTV +L +
Sbjct: 3 LTPLHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQN 62
Query: 528 FHNP----------------------------------------------------EQVI 535
+ P E++
Sbjct: 63 LYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEIT 122
Query: 536 YSWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY----CGCGSP---- 587
+ + +FI+ LPQG D V E G QLSGG +Q +A RA
Sbjct: 123 AAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSAL 182
Query: 588 -----------------------------PYHYKNADITSVVKNGVIAEKGRHDALMKIT 618
+ AD ++ G I E G H LM+
Sbjct: 183 DANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLME-K 241
Query: 619 DGTYASL 625
G Y ++
Sbjct: 242 KGCYWAM 248
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 106 bits (266), Expect = 1e-26
Identities = 54/219 (24%), Positives = 92/219 (42%), Gaps = 53/219 (24%)
Query: 89 HVPSGTTVALVGQSGSGKSTVINLVESFRFYAP-----------------EAEQEKIGLV 131
+ +A G SG GKST+ +L+ RFY P E + +IG V
Sbjct: 24 EAQPNSIIAFAGPSGGGKSTIFSLL--ERFYQPTAGEITIDGQPIDNISLENWRSQIGFV 81
Query: 132 SKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV------- 184
S++ + + + +DE + + LA A ++ +P L+T V
Sbjct: 82 SQDS-AIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKI 140
Query: 185 -------------------------ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLIT 219
AT ++D++SE +VQ A+ L+ +T +++A+ L T
Sbjct: 141 SGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLST 200
Query: 220 IRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQ 258
I +AD I + KG+I G H+EL+ Y++ V Q
Sbjct: 201 IVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVSEQ 238
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 57.2 bits (138), Expect = 1e-09
Identities = 39/212 (18%), Positives = 64/212 (30%), Gaps = 88/212 (41%)
Query: 507 TVALVGENGNGKSTVISLAERFHNPE--QVIYSWIIIK---------------------- 542
+A G +G GKST+ SL ERF+ P ++ I
Sbjct: 30 IIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA 89
Query: 543 ----------------------------CTNFIASLPQGSDLNVGERGLQLSGGLKQRIA 574
+F+ ++P + VGERG+++SGG +QR+A
Sbjct: 90 GTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLA 149
Query: 575 RTRA----------RNYCGCGSPPYHY-------------------------KNADITSV 599
RA +AD
Sbjct: 150 IARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYF 209
Query: 600 VKNGVIAEKGRHDALMKITDGTYASLTALHMS 631
++ G I G+H+ L+ T YA + ++
Sbjct: 210 IEKGQITGSGKHNELVA-THPLYAKYVSEQLT 240
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 104 bits (261), Expect = 2e-25
Identities = 36/227 (15%), Positives = 83/227 (36%), Gaps = 44/227 (19%)
Query: 89 HVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQ----EKIGLVSKEPIFLFCDFNE 144
++ G +A+ G +GSGK++++ L+ ++ S+ + E
Sbjct: 58 NIEKGEMLAITGSTGSGKTSLLMLI--LGELEASEGIIKHSGRVSFCSQFSWIMPGTIKE 115
Query: 145 GQYIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV-------------------- 184
+ + + V+ ++ I K +TV+
Sbjct: 116 NIIFG---VSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARA 172
Query: 185 ------------ATNAVDAQS-ERIVQAAMVKLVTNQTVVIVANCLITIRNADCIIMVSK 231
+D + E++ ++ + KL+ N+T ++V + + +R AD I+++ +
Sbjct: 173 VYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQ 232
Query: 232 GKIVEKGTHDELIEDPEGAYSQLVRLQ--EGAKEAQDKSLGVKHILR 276
G GT EL S+L+ + E + S+ + + R
Sbjct: 233 GSSYFYGTFSELQSLRPDFSSKLMGYDTFDQFTEERRSSILTETLRR 279
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 52.6 bits (126), Expect = 4e-08
Identities = 26/161 (16%), Positives = 47/161 (29%), Gaps = 61/161 (37%)
Query: 475 IFEILESKPKIDWSSKDGMTPSTVRGDIVFEH--------------------TVALVGEN 514
E+LE + + S+ ++ F H +A+ G
Sbjct: 16 FGELLEKVQQSN----GDRKHSSDENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGST 71
Query: 515 GNGKSTVISLAERFHNPEQ----------------VIYSWII------------------ 540
G+GK++++ L + I I
Sbjct: 72 GSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSV 131
Query: 541 ---IKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRA 578
+ I + + +GE G+ LSGG + RI+ RA
Sbjct: 132 VKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARA 172
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 66.5 bits (162), Expect = 6e-13
Identities = 32/205 (15%), Positives = 71/205 (34%), Gaps = 46/205 (22%)
Query: 89 HVPSGTTVALVGQSGSGKSTVINLV--------------ESFRFYAPEAEQEKIGLVSKE 134
V +G + LVG +G+GKST++ + + ++ +S++
Sbjct: 21 EVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQ 80
Query: 135 PIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLAN-----AEKSIDKLPLGLDTVVA---- 185
F Y+ + + + + V A +S ++L G V
Sbjct: 81 QTPPF-ATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAV 139
Query: 186 --------------------TNAVDAQSERIVQAAMVKLV-TNQTVVIVANCL-ITIRNA 223
N++D + + + L +V+ ++ L T+R+A
Sbjct: 140 VLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHA 199
Query: 224 DCIIMVSKGKIVEKGTHDELIEDPE 248
++ GK++ G +E++ P
Sbjct: 200 HRAWLLKGGKMLASGRREEVLTPPN 224
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 59.4 bits (144), Expect = 2e-10
Identities = 32/208 (15%), Positives = 76/208 (36%), Gaps = 44/208 (21%)
Query: 89 HVPSGTTVALVGQSGSGKSTVINL-------------VESFRFYAPEAEQEKIGLVSKEP 135
+ G + L+G SG GK+T + + + I +V +
Sbjct: 28 TIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSY 87
Query: 136 IFLFCDFNEGQYIPYG------KQNASDEHIRPAVQLANAEKSIDKLPLGL--------- 180
++ + I + ++ D+ +R A +L E+ +++ P L
Sbjct: 88 A-VWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVA 146
Query: 181 ---------DTVVA---TNAVDAQSERIVQAAMVKLV--TNQTVVIVANCLITIRN-ADC 225
D ++ + +DA+ ++A + KL T + V + + D
Sbjct: 147 VARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDR 206
Query: 226 IIMVSKGKIVEKGTHDELIEDPEGAYSQ 253
I ++++G++++ G+ E+ P +
Sbjct: 207 IAVMNRGQLLQIGSPTEVYLRPNSVFVA 234
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 58.9 bits (142), Expect = 2e-10
Identities = 37/205 (18%), Positives = 68/205 (33%), Gaps = 41/205 (20%)
Query: 89 HVPSGTTVALVGQSGSGKSTVINL-------------VESFRFYAPEAEQEKIGLVSKEP 135
V SG ++G +G+GK+ + L ++ E+ I V +
Sbjct: 22 KVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNY 81
Query: 136 IFLFCDFNEGQ----YIPYGKQNASDEHIRPAVQLA---NAEKSIDKLPLGLDTVVATN- 187
LF N + + K + A L +++ L G VA
Sbjct: 82 S-LFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALAR 140
Query: 188 ----------------AVDAQSERIVQAAMVKLV--TNQTVVIVANCLITIRN-ADCIIM 228
A+D +++ + + L TV+ + + R AD I +
Sbjct: 141 ALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAV 200
Query: 229 VSKGKIVEKGTHDELIEDPEGAYSQ 253
V GK+++ G +E+ E P
Sbjct: 201 VMDGKLIQVGKPEEIFEKPVEGRVA 225
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 58.5 bits (141), Expect = 3e-10
Identities = 35/215 (16%), Positives = 75/215 (34%), Gaps = 47/215 (21%)
Query: 89 HVPSGTTVALVGQSGSGKSTVINLV--------------ESFRFYAPEAEQEKIGLVSKE 134
+ G L+G +G+GK+T + ++ P ++ I + +E
Sbjct: 24 EIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEE 83
Query: 135 P-IFLFCDFNEGQYIPYGKQNASDEHIRPAVQLA--------NAEKSIDKLPLGLDTVVA 185
+ E G +S I V+ A + + G+ +
Sbjct: 84 AGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLL 143
Query: 186 -----------------TNAVDAQSERIVQAAMVKLV-TNQTVVIVANCLITIRN-ADCI 226
T+ +D + R V+ + + T+++ ++ ++ + D I
Sbjct: 144 IARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRI 203
Query: 227 IMVSKGKIVEKGTHDELIEDP-----EGAYSQLVR 256
++ G IVE GT +EL E E + ++V+
Sbjct: 204 ALIHNGTIVETGTVEELKERYKAQNIEEVFEEVVK 238
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 57.7 bits (139), Expect = 6e-10
Identities = 38/204 (18%), Positives = 72/204 (35%), Gaps = 42/204 (20%)
Query: 93 GTTVALVGQSGSGKSTVINL-------------VESFRFYAPEAEQEKIGLVSKEPIFLF 139
L+G +G+GKS + L + E+ IG V ++ LF
Sbjct: 24 RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYA-LF 82
Query: 140 CDFNEGQYIPYGKQNASDEHIRPAVQLAN--------AEKSIDKLPLGLDTVVA------ 185
+ + I YG +N V+ ++ +L G VA
Sbjct: 83 PHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALV 142
Query: 186 -----------TNAVDAQSERIVQAAMVKLV--TNQTVVIVANCL-ITIRNADCIIMVSK 231
+AVD +++ ++ + + + ++ V + L AD + ++
Sbjct: 143 IQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLN 202
Query: 232 GKIVEKGTHDELIEDPEGAYSQLV 255
G+IVEKG EL G ++ +
Sbjct: 203 GRIVEKGKLKELFSAKNGEVAEFL 226
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 53.0 bits (127), Expect = 2e-08
Identities = 36/207 (17%), Positives = 67/207 (32%), Gaps = 42/207 (20%)
Query: 89 HVPSGTTVALVGQSGSGKSTVINL-------------VESFRFYAPEAEQEKIGLVSKEP 135
+ G V VG SG GKST++ + + R + +G+V +
Sbjct: 22 DIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSY 81
Query: 136 IFLFCDFNEGQ-YIPYGKQNASDEHIRP-------AVQLAN-AEKSIDKLPLGLDTVVA- 185
A E I +QLA+ ++ L G VA
Sbjct: 82 ALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAI 141
Query: 186 ----------------TNAVDAQSERIVQAAMVKLV--TNQTVVIVANCLITIRN-ADCI 226
+ +DA ++ + +L +T++ V + + AD I
Sbjct: 142 GRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKI 201
Query: 227 IMVSKGKIVEKGTHDELIEDPEGAYSQ 253
+++ G++ + G EL P +
Sbjct: 202 VVLDAGRVAQVGKPLELYHYPADRFVA 228
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 52.8 bits (126), Expect = 3e-08
Identities = 39/211 (18%), Positives = 76/211 (36%), Gaps = 49/211 (23%)
Query: 89 HVPSGTTVALVGQSGSGKSTVINL------------------VESFRFYAPEAEQEKIGL 130
++ +G ++G SG+GK+T + + V S E KIG+
Sbjct: 27 NIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGM 86
Query: 131 VSKEPIFLFCDFNEGQYIPYG--KQNASDEHIRPAVQLA--------NAEKSIDKLPLGL 180
V + L+ + + I + S E IR V+ +L
Sbjct: 87 VFQTWA-LYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQ 145
Query: 181 DTVVATN-----------------AVDAQSERIVQAAMVKLV--TNQTVVIVANCLITIR 221
VA +DA+ +A + ++ T+++V++ I
Sbjct: 146 QQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIF 205
Query: 222 N-ADCIIMVSKGKIVEKGTHDELIEDPEGAY 251
AD + ++ KGK+V+ G ++L ++P
Sbjct: 206 AIADRVGVLVKGKLVQVGKPEDLYDNPVSIQ 236
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 50.3 bits (120), Expect = 1e-07
Identities = 30/172 (17%), Positives = 65/172 (37%), Gaps = 41/172 (23%)
Query: 82 YDNRFLQHV----PSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQ------------ 125
YD L+ + G V G +G GK+T++ + + P +
Sbjct: 12 YDKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTI--STYLKPLKGEIIYNGVPITKVK 69
Query: 126 EKIGLVSKEPIFLFC----DFNEGQYIPYGKQNASDEHIR--PAVQLANAEKSIDKLPLG 179
KI + +E I D+ + YG + +E + +V++ + +K + +L G
Sbjct: 70 GKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQG 129
Query: 180 LDTVVA-----------------TNAVDAQSERIVQAAMVKLVTNQTVVIVA 214
V A+D S+ V ++++++ + +VI++
Sbjct: 130 TIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIIS 181
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 50.6 bits (121), Expect = 2e-07
Identities = 38/224 (16%), Positives = 82/224 (36%), Gaps = 60/224 (26%)
Query: 89 HVPSGTTVALVGQSGSGKSTVINLV------------------------ESFRFYAPEAE 124
+G ++++G SGSGKST + + + A + +
Sbjct: 24 QARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQ 83
Query: 125 QE----KIGLVSKEPIFLFCDFNEGQYI---PYGKQNASDEHIRPAV-----QLANAEKS 172
++ +V + L+ + + P S R ++ E++
Sbjct: 84 LRLLRTRLTMVFQHF-NLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERA 142
Query: 173 IDKLPLGL------------------DTVVA---TNAVDAQSERIVQAAMVKLV-TNQTV 210
K P+ L D ++ T+A+D + V M +L +T+
Sbjct: 143 QGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTM 202
Query: 211 VIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIEDPEGAYSQ 253
V+V + + R+ + +I + +GKI E+G +++ +P+ Q
Sbjct: 203 VVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGNPQSPRLQ 246
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 49.5 bits (118), Expect = 3e-07
Identities = 31/211 (14%), Positives = 69/211 (32%), Gaps = 48/211 (22%)
Query: 89 HVPSGTTVALVGQSGSGKSTVINLV--------------------ESFRFYAPEAEQEKI 128
V G + L+G SG GK+T + ++ + P +++
Sbjct: 25 EVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIA 84
Query: 129 GLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRP-------AVQLAN-AEKSIDKLPLGL 180
+ ++ + P + + I + L + +L G
Sbjct: 85 MVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQ 144
Query: 181 DTVVA-----------------TNAVDAQSERIVQAAMVKLV--TNQTVVIVANCLITIR 221
VA + +DA+ ++A + KL T + V + +
Sbjct: 145 RQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAM 204
Query: 222 N-ADCIIMVSKGKIVEKGTHDELIEDPEGAY 251
D I ++++G + + G+ DE+ + P +
Sbjct: 205 TMGDRIAVMNRGVLQQVGSPDEVYDKPANTF 235
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 49.1 bits (117), Expect = 4e-07
Identities = 34/204 (16%), Positives = 68/204 (33%), Gaps = 44/204 (21%)
Query: 89 HVPSGTTVALVGQSGSGKSTVINLV--------------ESFRFYAPEAEQEKIGLVSKE 134
VP G V L+G +G+GK+T ++ + P ++G+
Sbjct: 28 KVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVP 87
Query: 135 PIFL-FCDFNEGQYIPYGKQNASD-EHIRPAVQLA---------NAEKSIDKLPLG---- 179
F + + + G N D E I+ ++ ++ L G
Sbjct: 88 EGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQM 147
Query: 180 -------------LDTVVATNAVDAQSERIVQAAMVKLV-TNQTVVIVA-NCLITIRNAD 224
L + + V + K+ T+++V N L ++ A
Sbjct: 148 LAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAH 207
Query: 225 CIIMVSKGKIVEKGTHDELIEDPE 248
++ G+IV +G EL+++
Sbjct: 208 YGYVLETGQIVLEGKASELLDNEM 231
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 47.6 bits (113), Expect = 1e-06
Identities = 32/215 (14%), Positives = 73/215 (33%), Gaps = 53/215 (24%)
Query: 89 HVPSGTTVALVGQSGSGKSTVINL------------------VESFRFYAPEAEQEKIGL 130
HVP+G ++G SG+GKST+I + + + +IG+
Sbjct: 27 HVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGM 86
Query: 131 VSKEPIFLFCDFNEGQYIPYG------KQNASDEHIRPAVQLANAEKSIDKLP------- 177
+ + L + ++ + + L D P
Sbjct: 87 IFQHFN-LLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQ 145
Query: 178 ----------------LGLDTVVATNAVDAQSERIVQAAMVKLV--TNQTVVIVANCLIT 219
L D + +D + R + + + T++++ + +
Sbjct: 146 KQRVAIARALASNPKVLLCDEATSA--LDPATTRSILELLKDINRRLGLTILLITHEMDV 203
Query: 220 IRN-ADCIIMVSKGKIVEKGTHDELIEDPEGAYSQ 253
++ DC+ ++S G+++E+ T E+ P+ +Q
Sbjct: 204 VKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQ 238
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 45.8 bits (107), Expect = 3e-06
Identities = 18/169 (10%), Positives = 39/169 (23%), Gaps = 18/169 (10%)
Query: 96 VALVGQSGSGKSTVINLV---------ESFRFYAPEAEQEKIGLVSKEPIFLFCDFNEGQ 146
+ + G+ G GK+T++ + + + E +K +
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSK 62
Query: 147 YIPYGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVVATNAVD-------AQSERIVQA 199
+ K S + +D +
Sbjct: 63 FFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLV 122
Query: 200 AMVKLVTNQTVVIVANCLITIRNADCIIMVSKGKIVE--KGTHDELIED 246
+ N VV I + ++E D ++ED
Sbjct: 123 RQIMHDPNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPENRDVILED 171
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 46.4 bits (110), Expect = 3e-06
Identities = 35/203 (17%), Positives = 72/203 (35%), Gaps = 53/203 (26%)
Query: 89 HVPSGTTVALVGQSGSGKSTVINLVESF-------------------RFYAPEAEQEKIG 129
++ G V+++G SGSGKST++N++ + ++KIG
Sbjct: 27 NIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIG 86
Query: 130 LVSKEPIFLFCDFNEGQYI-----PYGKQNASDEHIRPAVQLAN-----AEKSIDKLP-- 177
V ++ L + + + S E R E+ + P
Sbjct: 87 FVFQQF-NLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQ 145
Query: 178 --------LGLDTVVATN-----------AVDAQSERIVQAAMVKLV--TNQTVVIVANC 216
+ + +A N A+D+++ + + KL +TVV+V +
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHD 205
Query: 217 LITIRNADCIIMVSKGKIVEKGT 239
+ R + II + G++ +
Sbjct: 206 INVARFGERIIYLKDGEVEREEK 228
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 319 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 40.7 bits (93), Expect = 4e-04
Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 2/62 (3%)
Query: 424 FCFFIGSKLVEHGDATFGEVFKFLSEFG-CFWCLES-TAVAPNADKAKGSAASIFEILES 481
F + S T G + S L+S T V + + ++F IL+S
Sbjct: 256 FVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDS 315
Query: 482 KP 483
+
Sbjct: 316 EQ 317
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 40.7 bits (93), Expect = 4e-04
Identities = 11/66 (16%), Positives = 22/66 (33%), Gaps = 2/66 (3%)
Query: 420 HINAFCFFIGSKLVEHGDATFGEVFKFLSEFG-CFWCLES-TAVAPNADKAKGSAASIFE 477
+G+ L G T G + F+ F L A ++ S +F+
Sbjct: 257 IGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQ 316
Query: 478 ILESKP 483
+++
Sbjct: 317 LIDEDY 322
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 37.3 bits (86), Expect = 0.003
Identities = 12/64 (18%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 186 TNAVDAQSERIVQAAMVKLV-TNQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDEL 243
V + +++L T +I+ + L + N D + ++ G+I+ +G +E
Sbjct: 178 IAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEE 237
Query: 244 IEDP 247
I++
Sbjct: 238 IKNV 241
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 37.3 bits (86), Expect = 0.004
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 89 HVPSGTTVALVGQSGSGKSTVINLV 113
V G ++G +GSGKST+IN++
Sbjct: 26 SVNKGDVTLIIGPNGSGKSTLINVI 50
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 632 | |||
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 99.97 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 99.97 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 99.96 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 99.96 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 99.96 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 99.96 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 99.96 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 99.96 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 99.96 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 99.95 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 99.95 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 99.95 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 99.94 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 99.93 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 99.93 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 99.92 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 99.9 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 99.89 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 99.88 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 99.88 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 99.88 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 99.88 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 99.87 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 99.87 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 99.86 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 99.85 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 99.83 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 99.82 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 99.82 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 99.8 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 99.78 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 99.51 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.17 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.06 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.9 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.75 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 98.61 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 98.58 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 97.88 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 97.6 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.0 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.99 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 96.77 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.74 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.74 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 96.73 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.7 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 96.68 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.66 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.61 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.61 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.61 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.6 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.6 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 96.57 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.57 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.56 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.54 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.53 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.52 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.47 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 96.41 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.4 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.39 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.39 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.38 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 96.36 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.35 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.33 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 96.28 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.26 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 96.25 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.24 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 96.23 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.22 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.2 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 96.14 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 96.12 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.11 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.11 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 96.11 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.1 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.08 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.08 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.06 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 96.06 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.04 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.04 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.02 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.0 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.99 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 95.95 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.93 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.93 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 95.93 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.93 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.91 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.91 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 95.89 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 95.87 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 95.87 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 95.87 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 95.86 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 95.83 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 95.8 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.8 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 95.77 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 95.75 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 95.74 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.71 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 95.7 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 95.67 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.62 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.62 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 95.6 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.59 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.58 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 95.58 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 95.57 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 95.57 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 95.54 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 95.53 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 95.53 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 95.51 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 95.47 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 95.46 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 95.46 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 95.42 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 95.4 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 95.39 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 95.37 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 95.34 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 95.34 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 95.33 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 95.31 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 95.31 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 95.3 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 95.29 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 95.29 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 95.29 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 95.27 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 95.25 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 95.24 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 95.24 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 95.22 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.22 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.21 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 95.19 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 95.18 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 95.17 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 95.14 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 95.14 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 95.09 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 95.08 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 95.03 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 95.03 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 95.01 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 95.0 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.95 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 94.95 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 94.93 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 94.92 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 94.85 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 94.81 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 94.8 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 94.79 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 94.79 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 94.75 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 94.74 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 94.73 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 94.71 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 94.69 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 94.67 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 94.63 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 94.62 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 94.62 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 94.61 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 94.61 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 94.58 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 94.58 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 94.57 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.55 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 94.54 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 94.52 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 94.47 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 94.4 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 94.33 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 94.29 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 94.27 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.27 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 94.27 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 94.24 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 94.23 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 94.2 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 94.17 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.14 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 94.13 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 94.11 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.09 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.07 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 94.05 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 94.03 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 94.0 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 93.99 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 93.91 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 93.9 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 93.88 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.85 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 93.84 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 93.79 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 93.78 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 93.76 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 93.74 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 93.73 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.71 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 93.7 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.69 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 93.58 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 93.56 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 93.55 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 93.52 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.51 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 93.5 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 93.49 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 93.48 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 93.47 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 93.47 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 93.44 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 93.41 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 93.4 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 93.33 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 93.32 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 93.3 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 93.3 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 93.29 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 93.23 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 93.21 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.2 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 93.19 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 93.19 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 93.19 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 93.11 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.11 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 93.09 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 93.08 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 93.06 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 93.05 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 93.04 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 93.01 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 93.0 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 92.98 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 92.96 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 92.93 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 92.93 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 92.93 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 92.92 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 92.9 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 92.89 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 92.87 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 92.85 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 92.83 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 92.83 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 92.82 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 92.79 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 92.78 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 92.76 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 92.75 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 92.74 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 92.71 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 92.67 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 92.66 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 92.63 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 92.62 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 92.58 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 92.56 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 92.55 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 92.52 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 92.52 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 92.44 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 92.41 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 92.35 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 92.35 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 92.33 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 92.32 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 92.31 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 92.25 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 92.23 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 92.22 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 92.22 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 92.2 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 92.18 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 92.17 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 92.15 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 92.15 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 92.14 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 92.13 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 92.11 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 92.1 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 92.1 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 92.1 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 92.07 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 92.02 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 92.02 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 92.01 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 92.0 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 91.99 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 91.98 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 91.96 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 91.94 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 91.91 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 91.84 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 91.82 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 91.81 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 91.73 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 91.71 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 91.67 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 91.67 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 91.61 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 91.61 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 91.6 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 91.6 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 91.57 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 91.5 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 91.5 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 91.46 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 91.45 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 91.41 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 91.41 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 91.41 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 91.38 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 91.38 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 91.23 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 91.17 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 91.17 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 91.15 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 91.13 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 91.09 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 90.95 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 90.9 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 90.89 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 90.89 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 90.88 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 90.86 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 90.86 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 90.81 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 90.79 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 90.75 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 90.74 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 90.73 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 90.71 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 90.66 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 90.64 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 90.63 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 90.6 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 90.58 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 90.57 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 90.55 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 90.55 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 90.52 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 90.48 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 90.43 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 90.39 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 90.38 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 90.24 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 90.18 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 90.17 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 90.15 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 90.12 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 90.01 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 90.01 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 89.93 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 89.85 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 89.84 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 89.84 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 89.8 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 89.79 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 89.76 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 89.72 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 89.67 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 89.59 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 89.57 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 89.45 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 89.39 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 89.24 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 89.23 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 89.18 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 89.05 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 88.97 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 88.94 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 88.78 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 88.77 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 88.74 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 88.71 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 88.66 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 88.61 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 88.58 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 88.36 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 88.36 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 88.1 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 88.02 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 87.95 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 87.87 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 87.82 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 87.77 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 87.51 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 87.49 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 87.43 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 87.39 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 87.38 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 87.37 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 87.35 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 87.21 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 87.14 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 87.11 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 86.81 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 86.64 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 86.64 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 86.46 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 86.39 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 86.27 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 86.2 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 86.14 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 85.85 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 85.82 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 85.51 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 85.44 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 85.4 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 85.28 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 84.78 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 84.75 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 84.73 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 84.73 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 84.69 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 84.15 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 84.1 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 83.87 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 83.57 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 83.52 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 83.45 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 83.14 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 82.12 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 82.03 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 81.85 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 81.82 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 81.68 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 81.5 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 81.12 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 81.01 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 80.89 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 80.88 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 80.84 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 80.57 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 80.52 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 80.37 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 80.3 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 80.1 |
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=3.1e-37 Score=304.76 Aligned_cols=126 Identities=37% Similarity=0.525 Sum_probs=112.4
Q ss_pred eeEEEEEecCCCChHHHHHhhhcCCChhh------------hc-------------------------------------
Q 047286 505 EHTVALVGENGNGKSTVISLAERFHNPEQ------------VI------------------------------------- 535 (632)
Q Consensus 505 ~~~vaIVG~SGsGKSTL~~ll~r~y~~~~------------~~------------------------------------- 535 (632)
++++|||||||||||||+++|+|+|+|++ +.
T Consensus 41 Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~ 120 (253)
T d3b60a1 41 GKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSRE 120 (253)
T ss_dssp TCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHH
T ss_pred CCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhhhheEEEEeeccccCCcchhhhhhhcCcccCCHH
Confidence 34899999999999999999999999843 01
Q ss_pred ---HHHHHHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh-------------------------------
Q 047286 536 ---YSWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY------------------------------- 581 (632)
Q Consensus 536 ---~~~~~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~------------------------------- 581 (632)
.+....++.+||..+|+||||.++++|.+||||||||||||||+++
T Consensus 121 ~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~ 200 (253)
T d3b60a1 121 QIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK 200 (253)
T ss_dssp HHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhcc
Confidence 1111225679999999999999999999999999999999999766
Q ss_pred ----hccccchhhhhcCCEEEEEeCCeEeeecChHHHhccCCchhHHHHHhhhc
Q 047286 582 ----CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKITDGTYASLTALHMS 631 (632)
Q Consensus 582 ----~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~~~~~~ 631 (632)
|+||||+++++.||+|+||++|+|+|+|+|+||+++ +|.|++||+.|++
T Consensus 201 ~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~-~~~y~~l~~~Q~g 253 (253)
T d3b60a1 201 NRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ-HGVYAQLHKMQFG 253 (253)
T ss_dssp TSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHH-TSSHHHHHHHTCC
T ss_pred CCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CcHHHHHHHHccC
Confidence 889999999999999999999999999999999998 9999999999974
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=1.1e-36 Score=300.09 Aligned_cols=124 Identities=39% Similarity=0.559 Sum_probs=111.6
Q ss_pred eEEEEEecCCCChHHHHHhhhcCCChhh---------------------------------------------------h
Q 047286 506 HTVALVGENGNGKSTVISLAERFHNPEQ---------------------------------------------------V 534 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------------------------------------------------~ 534 (632)
+++|||||||||||||+++|.|+|+|++ +
T Consensus 45 e~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~ 124 (255)
T d2hyda1 45 ETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEV 124 (255)
T ss_dssp CEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHHhhheeeeeeccccCCCCCHHHHHhccCcCCCHHHH
Confidence 3899999999999999999999999843 1
Q ss_pred cHHHHHHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh---------------------------------
Q 047286 535 IYSWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY--------------------------------- 581 (632)
Q Consensus 535 ~~~~~~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~--------------------------------- 581 (632)
+.+....++++|+..||+||||.+|++|.+||||||||||||||+++
T Consensus 125 ~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~ 204 (255)
T d2hyda1 125 VEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDR 204 (255)
T ss_dssp HHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhcCC
Confidence 11112336789999999999999999999999999999999999766
Q ss_pred --hccccchhhhhcCCEEEEEeCCeEeeecChHHHhccCCchhHHHHHhhh
Q 047286 582 --CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKITDGTYASLTALHM 630 (632)
Q Consensus 582 --~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~~~~~ 630 (632)
|+||||+++++.||+|+||++|+|+|.|+|+||+++ +|.|++||+.|.
T Consensus 205 TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~-~~~y~~l~~~Q~ 254 (255)
T d2hyda1 205 TTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK-QGAYEHLYSIQN 254 (255)
T ss_dssp EEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHT-TSHHHHHHTTTT
T ss_pred EEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CcHHHHHHHHcC
Confidence 789999999999999999999999999999999997 999999999885
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.1e-36 Score=292.64 Aligned_cols=131 Identities=37% Similarity=0.507 Sum_probs=115.4
Q ss_pred ccEEEeeEEEEEecCCCChHHHHHhhhcCCChhh----------------------------------------------
Q 047286 500 GDIVFEHTVALVGENGNGKSTVISLAERFHNPEQ---------------------------------------------- 533 (632)
Q Consensus 500 g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------------------------------------------- 533 (632)
-+|+-++++|||||||||||||+++|.|+|+|++
T Consensus 24 l~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Ti~eNi~~~~~~ 103 (241)
T d2pmka1 24 LSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPG 103 (241)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHHHHCTTSTT
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceEEEEecccccCCccccccccccCcc
Confidence 3555567999999999999999999999999843
Q ss_pred -----hcHHHHHHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh---------------------------
Q 047286 534 -----VIYSWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY--------------------------- 581 (632)
Q Consensus 534 -----~~~~~~~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~--------------------------- 581 (632)
++......++.+++..+|+|++|.+|++|.+||||||||||||||+++
T Consensus 104 ~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~ 183 (241)
T d2pmka1 104 MSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMH 183 (241)
T ss_dssp CCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHH
Confidence 111112336679999999999999999999999999999999999766
Q ss_pred --------hccccchhhhhcCCEEEEEeCCeEeeecChHHHhccCCchhHHHHHhhh
Q 047286 582 --------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKITDGTYASLTALHM 630 (632)
Q Consensus 582 --------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~~~~~ 630 (632)
|+||||+++++.||+|+||++|+|+|+|+|+||++++++.|++||+.|.
T Consensus 184 ~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y~~l~~~Q~ 240 (241)
T d2pmka1 184 KICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQS 240 (241)
T ss_dssp HHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCHHHHHHHHHC
T ss_pred HHhCCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhc
Confidence 8899999999999999999999999999999999876789999999885
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-35 Score=293.10 Aligned_cols=126 Identities=34% Similarity=0.424 Sum_probs=110.2
Q ss_pred cEEEeeEEEEEecCCCChHHHHHhhhcCCChhh------------hcH--------------------------------
Q 047286 501 DIVFEHTVALVGENGNGKSTVISLAERFHNPEQ------------VIY-------------------------------- 536 (632)
Q Consensus 501 ~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~------------~~~-------------------------------- 536 (632)
+|+-++++|||||||||||||+++|.|+|+|++ +..
T Consensus 36 ~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~g~~~~ 115 (251)
T d1jj7a_ 36 TLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQK 115 (251)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHHHHHCSCSSC
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHHHHHhhhccccccccCcchhhhhhhhhccc
Confidence 344456999999999999999999999999843 111
Q ss_pred --------HHHHHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh---------------------------
Q 047286 537 --------SWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY--------------------------- 581 (632)
Q Consensus 537 --------~~~~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~--------------------------- 581 (632)
......+++++..||+|++|.++++|.+||||||||+|||||+++
T Consensus 116 ~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~ 195 (251)
T d1jj7a_ 116 PTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLY 195 (251)
T ss_dssp CCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHH
Confidence 111225568999999999999999999999999999999999655
Q ss_pred ----------hccccchhhhhcCCEEEEEeCCeEeeecChHHHhccCCchhHHHHH
Q 047286 582 ----------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKITDGTYASLTA 627 (632)
Q Consensus 582 ----------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~~ 627 (632)
++|||++++++.||+|+||++|+|+|+|||+||+++ +|.|++||+
T Consensus 196 ~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~-~~~y~~l~~ 250 (251)
T d1jj7a_ 196 ESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEK-KGCYWAMVQ 250 (251)
T ss_dssp TCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHH-TSHHHHHHC
T ss_pred HHhhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CcHHHHHhc
Confidence 789999999999999999999999999999999998 999999986
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=9.6e-35 Score=284.10 Aligned_cols=172 Identities=37% Similarity=0.573 Sum_probs=155.9
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCC---------------CCcHHhhcceEEEcccCcccccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRF---------------YAPEAEQEKIGLVSKEPIFLFCDFNEGQYIP 149 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~---------------~~~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~ 149 (632)
.+||+|++||++||+||||||||||+++|.|+.. +++..+|++++||+|+|++|.+++.+ |+.
T Consensus 21 ~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Ti~e--Ni~ 98 (241)
T d2pmka1 21 NINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIID--NIS 98 (241)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHH--HHC
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceEEEEecccccCCccccc--ccc
Confidence 3999999999999999999999999999985421 23445789999999999999999988 799
Q ss_pred cCCCCCCHHHHHHHHHHccchhhHhhCCccccccc--------------------------------ccCCCCHHHHHHH
Q 047286 150 YGKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV--------------------------------ATNAVDAQSERIV 197 (632)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~~~v--------------------------------~ts~LD~~~~~~i 197 (632)
++.+..+.+++.++++.+++.+++..+|.|+++.+ +||+||+.+++.+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i 178 (241)
T d2pmka1 99 LANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178 (241)
T ss_dssp TTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHH
T ss_pred ccCccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHH
Confidence 98888889999999999999999998888887766 3999999999999
Q ss_pred HHHHHHHhCCceEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHhcCCCcHHHHHHHHH
Q 047286 198 QAAMVKLVTNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQ 258 (632)
Q Consensus 198 ~~~l~~~~~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~~~ 258 (632)
++.|+++.+++|+|+|||+++.++.||+|++|++|+|+++|+|+|+++++++.|.++++.|
T Consensus 179 ~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y~~l~~~Q 239 (241)
T d2pmka1 179 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 239 (241)
T ss_dssp HHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHhCCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHh
Confidence 9999999889999999999999999999999999999999999999988788999998765
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=1.5e-34 Score=284.81 Aligned_cols=170 Identities=43% Similarity=0.615 Sum_probs=154.7
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCC---------------CCcHHhhcceEEEcccCccccccccccccccc
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRF---------------YAPEAEQEKIGLVSKEPIFLFCDFNEGQYIPY 150 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~---------------~~~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~ 150 (632)
+||+|++||++||+||||||||||+++|.|+.. +++..+|++++||+|++++|.+|+.+ |+.+
T Consensus 37 isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Ti~e--Ni~~ 114 (255)
T d2hyda1 37 INLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKE--NILL 114 (255)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHH--HHGG
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHHhhheeeeeeccccCCCCCHHH--HHhc
Confidence 999999999999999999999999999985421 23345789999999999999999988 7999
Q ss_pred CCCCCCHHHHHHHHHHccchhhHhhCCccccccc--------------------------------ccCCCCHHHHHHHH
Q 047286 151 GKQNASDEHIRPAVQLANAEKSIDKLPLGLDTVV--------------------------------ATNAVDAQSERIVQ 198 (632)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~~~v--------------------------------~ts~LD~~~~~~i~ 198 (632)
+.+..+++++.++++.+++++++..+|.|+++.+ +||+||+.+++.++
T Consensus 115 g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~ 194 (255)
T d2hyda1 115 GRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQ 194 (255)
T ss_dssp GCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHH
T ss_pred cCcCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHH
Confidence 9888889999999999999999999999998876 29999999999999
Q ss_pred HHHHHHhCCceEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHhcCCCcHHHHHHHHH
Q 047286 199 AAMVKLVTNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQ 258 (632)
Q Consensus 199 ~~l~~~~~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~~~ 258 (632)
+.|+++.+++|+|+|||+++.++.||+|++|++|+|++.|+|+||+++ ++.|+++++.|
T Consensus 195 ~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~-~~~y~~l~~~Q 253 (255)
T d2hyda1 195 EALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK-QGAYEHLYSIQ 253 (255)
T ss_dssp HHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHT-TSHHHHHHTTT
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CcHHHHHHHHc
Confidence 999999889999999999999999999999999999999999999987 67898888654
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=2.6e-35 Score=288.94 Aligned_cols=131 Identities=28% Similarity=0.429 Sum_probs=114.7
Q ss_pred ccEEEeeEEEEEecCCCChHHHHHhhhcCCChhh----------------------------------------------
Q 047286 500 GDIVFEHTVALVGENGNGKSTVISLAERFHNPEQ---------------------------------------------- 533 (632)
Q Consensus 500 g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------------------------------------------- 533 (632)
-+|.-++++|||||||||||||+++|.|+|+|++
T Consensus 23 l~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~ 102 (242)
T d1mv5a_ 23 FEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEG 102 (242)
T ss_dssp EEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHHHTTSCTTS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheEEEccccccCCcchhhheeccccc
Confidence 3455567999999999999999999999999843
Q ss_pred ------hcHHHHHHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh--------------------------
Q 047286 534 ------VIYSWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY-------------------------- 581 (632)
Q Consensus 534 ------~~~~~~~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~-------------------------- 581 (632)
++.......+.+++..+|+|++|.+|++|.+||||||||||||||+++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l 182 (242)
T d1mv5a_ 103 DYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKAL 182 (242)
T ss_dssp CSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHH
T ss_pred ccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHH
Confidence 111111235567899999999999999999999999999999999766
Q ss_pred ---------hccccchhhhhcCCEEEEEeCCeEeeecChHHHhccCCchhHHHHHhhhc
Q 047286 582 ---------CGCGSPPYHYKNADITSVVKNGVIAEKGRHDALMKITDGTYASLTALHMS 631 (632)
Q Consensus 582 ---------~~iahrl~~~~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~~~~~~ 631 (632)
+++|||+++++.||+|+||++|+|+|+|+|+||+++ ++.|++|++.|.+
T Consensus 183 ~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~-~~~y~~l~~~Q~~ 240 (242)
T d1mv5a_ 183 DSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVSEQLT 240 (242)
T ss_dssp HHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH-CHHHHHHHHCCCC
T ss_pred HHHcCCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-ChHHHHHHHHHhh
Confidence 789999999999999999999999999999999998 9999999998864
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.6e-33 Score=277.87 Aligned_cols=171 Identities=41% Similarity=0.615 Sum_probs=152.0
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCC---------------CCcHHhhcceEEEcccCcccccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRF---------------YAPEAEQEKIGLVSKEPIFLFCDFNEGQYIP 149 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~---------------~~~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~ 149 (632)
.+||+|++||++||+||||||||||+++|+|+.. .++..+|++++||+|+|.+|.+++.+ |+.
T Consensus 33 ~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~~--n~~ 110 (253)
T d3b60a1 33 NINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVAN--NIA 110 (253)
T ss_dssp EEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHH--HHH
T ss_pred ceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhhhheEEEEeeccccCCcchhh--hhh
Confidence 3999999999999999999999999999985422 12345788999999999999999887 677
Q ss_pred cCC-CCCCHHHHHHHHHHccchhhHhhCCccccccc--------------------------------ccCCCCHHHHHH
Q 047286 150 YGK-QNASDEHIRPAVQLANAEKSIDKLPLGLDTVV--------------------------------ATNAVDAQSERI 196 (632)
Q Consensus 150 ~~~-~~~~~~~~~~~~~~~~l~~~i~~l~~g~~~~v--------------------------------~ts~LD~~~~~~ 196 (632)
++. ...+.+++.++++.+++.+++..+|.|+++.+ +||+||+.+++.
T Consensus 111 ~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~ 190 (253)
T d3b60a1 111 YARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERA 190 (253)
T ss_dssp TTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHH
T ss_pred hcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHH
Confidence 775 34678999999999999999999998888766 399999999999
Q ss_pred HHHHHHHHhCCceEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHhcCCCcHHHHHHHHH
Q 047286 197 VQAAMVKLVTNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQ 258 (632)
Q Consensus 197 i~~~l~~~~~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~~~ 258 (632)
+++.|+++.+++|+|+|||+++.++.||+|++|++|+|+++|+|+|++++ ++.|.++++.|
T Consensus 191 i~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~-~~~y~~l~~~Q 251 (253)
T d3b60a1 191 IQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ-HGVYAQLHKMQ 251 (253)
T ss_dssp HHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHH-TSSHHHHHHHT
T ss_pred HHHHHHHhccCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CcHHHHHHHHc
Confidence 99999999889999999999999989999999999999999999999986 67899998765
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=99.97 E-value=6.5e-33 Score=271.75 Aligned_cols=171 Identities=32% Similarity=0.498 Sum_probs=145.9
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCC---------------CCcHHhhcceEEEcccCcccccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRF---------------YAPEAEQEKIGLVSKEPIFLFCDFNEGQYIP 149 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~---------------~~~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~ 149 (632)
.+||+|++||++||+||||||||||+++|.|+.. +++..+|++|+||+|+|.+|.+++.+ |+.
T Consensus 20 ~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~e--Ni~ 97 (242)
T d1mv5a_ 20 DISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRE--NLT 97 (242)
T ss_dssp EEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHH--HTT
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheEEEccccccCCcchhh--hee
Confidence 4999999999999999999999999999985422 12334688999999999999999888 677
Q ss_pred cCC-CCCCHHHHHHHHHHccchhhHhhCCccccccc--------------------------------ccCCCCHHHHHH
Q 047286 150 YGK-QNASDEHIRPAVQLANAEKSIDKLPLGLDTVV--------------------------------ATNAVDAQSERI 196 (632)
Q Consensus 150 ~~~-~~~~~~~~~~~~~~~~l~~~i~~l~~g~~~~v--------------------------------~ts~LD~~~~~~ 196 (632)
++. ...+.+++.++++.+++.+++..+|.++++.+ +||+||+.+++.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~ 177 (242)
T d1mv5a_ 98 YGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESM 177 (242)
T ss_dssp SCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCH
T ss_pred cccccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHH
Confidence 663 34678888889998888777776666655544 399999999999
Q ss_pred HHHHHHHHhCCceEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHhcCCCcHHHHHHHHH
Q 047286 197 VQAAMVKLVTNQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLVRLQ 258 (632)
Q Consensus 197 i~~~l~~~~~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~~~ 258 (632)
+++.|+++.+++|+|+|||+++.++.||||++|++|+|+++|+++||+++ ++.|.++++.|
T Consensus 178 i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~-~~~y~~l~~~Q 238 (242)
T d1mv5a_ 178 VQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVSEQ 238 (242)
T ss_dssp HHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH-CHHHHHHHHCC
T ss_pred HHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-ChHHHHHHHHH
Confidence 99999999889999999999999999999999999999999999999986 67888887644
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=4.3e-32 Score=267.38 Aligned_cols=168 Identities=33% Similarity=0.487 Sum_probs=144.5
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCC---------------CCcHHhhcceEEEcccCcccccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRF---------------YAPEAEQEKIGLVSKEPIFLFCDFNEGQYIP 149 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~---------------~~~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~ 149 (632)
.+||+|++||+++|+||||||||||+++|.|+.. +++..+|++++||+|+|.+|..++.+ |+.
T Consensus 32 ~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~e--ni~ 109 (251)
T d1jj7a_ 32 GLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQE--NIA 109 (251)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHH--HHH
T ss_pred ceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHHHHHhhhccccccccCcchhh--hhh
Confidence 3999999999999999999999999999985422 12344788999999999999998887 788
Q ss_pred cCC-CCCCHHHHHHHHHHccchhhHhhCCccccccc--------------------------------ccCCCCHHHHHH
Q 047286 150 YGK-QNASDEHIRPAVQLANAEKSIDKLPLGLDTVV--------------------------------ATNAVDAQSERI 196 (632)
Q Consensus 150 ~~~-~~~~~~~~~~~~~~~~l~~~i~~l~~g~~~~v--------------------------------~ts~LD~~~~~~ 196 (632)
++. .....+++.++.+.+++.+++..+|.|+++.+ +||+||+.++..
T Consensus 110 ~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~ 189 (251)
T d1jj7a_ 110 YGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQ 189 (251)
T ss_dssp CSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHH
T ss_pred hhhcccchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeeccccCCcEEEecCcCcccChhhHHH
Confidence 874 34567777888888888888888888777665 299999999999
Q ss_pred HHHHHHHHhC--CceEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHhcCCCcHHHHHH
Q 047286 197 VQAAMVKLVT--NQTVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLV 255 (632)
Q Consensus 197 i~~~l~~~~~--~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~ 255 (632)
+++.|.++.+ ++|+|+|||+++.++.||||++|++|+|+++|+|+||+++ ++.|.+++
T Consensus 190 i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~-~~~y~~l~ 249 (251)
T d1jj7a_ 190 VEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEK-KGCYWAMV 249 (251)
T ss_dssp HHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHH-TSHHHHHH
T ss_pred HHHHHHHHhhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CcHHHHHh
Confidence 9999998754 7899999999999999999999999999999999999987 67788776
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.96 E-value=1.4e-29 Score=245.23 Aligned_cols=167 Identities=20% Similarity=0.296 Sum_probs=130.7
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC-------------cHHhhcceEEEcccCcccccccccccccccCC
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA-------------PEAEQEKIGLVSKEPIFLFCDFNEGQYIPYGK 152 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~-------------~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~ 152 (632)
+||+|++||+++|+||||||||||+++|.|+...+ ....+++||||||++.+|. .++..+|+.++.
T Consensus 25 vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~-~ltv~enl~~~~ 103 (239)
T d1v43a3 25 LNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWP-HMTVYENIAFPL 103 (239)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC-------CCCHHHHHHTTC
T ss_pred eeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcccceEEEEeechhhcc-cchHHHHHHHHH
Confidence 99999999999999999999999999998653221 0124677999999997664 334344776653
Q ss_pred C--CCC----HHHHHHHHHHccchhh----HhhCCcccccccc-----------------cCCCCHHHHHHHHHHHHHHh
Q 047286 153 Q--NAS----DEHIRPAVQLANAEKS----IDKLPLGLDTVVA-----------------TNAVDAQSERIVQAAMVKLV 205 (632)
Q Consensus 153 ~--~~~----~~~~~~~~~~~~l~~~----i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~~l~~~~ 205 (632)
. ..+ .+++.++++.+++.+. ..+||+|++++++ |++|||.++..+++.|+++.
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~ 183 (239)
T d1v43a3 104 KIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQ 183 (239)
T ss_dssp C--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHH
Confidence 2 233 3456677888887654 6678899998883 99999999999999999984
Q ss_pred -C-CceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcCCCcHHHH
Q 047286 206 -T-NQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIEDPEGAYSQ 253 (632)
Q Consensus 206 -~-~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~~~~~~~~ 253 (632)
+ +.|+|+|||+++.+.. ||||++|++|+|+++|+++|+.++|.+.|..
T Consensus 184 ~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~~~~~ 234 (239)
T d1v43a3 184 QKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFVA 234 (239)
T ss_dssp HHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSBHHHH
T ss_pred HhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHHHH
Confidence 3 8999999999998865 9999999999999999999999988777653
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=1.3e-29 Score=244.76 Aligned_cols=166 Identities=18% Similarity=0.313 Sum_probs=114.0
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC-------------cHHhhcceEEEcccCcccccccccccccccCC
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA-------------PEAEQEKIGLVSKEPIFLFCDFNEGQYIPYGK 152 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~-------------~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~ 152 (632)
+||+|++||+++|+||||||||||+++|.|+...+ ....+++||||||++.+|. .++..+|+.++.
T Consensus 19 isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~-~~tv~eni~~~~ 97 (232)
T d2awna2 19 INLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYP-HLSVAENMSFGL 97 (232)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEECSSCCC---------------
T ss_pred eEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCchhhceeeeecccccccc-chhHHHHHHHHH
Confidence 99999999999999999999999999998663221 1124678999999997654 344444777653
Q ss_pred CC------CCHHHHHHHHHHccchh----hHhhCCcccccccc-----------------cCCCCHHHHHHHHHHHHHHh
Q 047286 153 QN------ASDEHIRPAVQLANAEK----SIDKLPLGLDTVVA-----------------TNAVDAQSERIVQAAMVKLV 205 (632)
Q Consensus 153 ~~------~~~~~~~~~~~~~~l~~----~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~~l~~~~ 205 (632)
.. ...+++.++++.+++.+ ...+||+|++++++ |++|||.+++.+++.|+++.
T Consensus 98 ~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~ 177 (232)
T d2awna2 98 KLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLH 177 (232)
T ss_dssp -------CHHHHHHHHHHHHC---------------------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHH
Confidence 21 12356778888887654 56778899999984 99999999999999999974
Q ss_pred --CCceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcCCCcHHH
Q 047286 206 --TNQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIEDPEGAYS 252 (632)
Q Consensus 206 --~~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~~~~~~~ 252 (632)
.+.|+|++||+++.+.. ||||++|++|+|+++|+++|++++|.+.|.
T Consensus 178 ~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~~~v 227 (232)
T d2awna2 178 KRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFV 227 (232)
T ss_dssp HHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBHHH
T ss_pred HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCCCHHH
Confidence 48899999999988866 999999999999999999999988877664
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.96 E-value=1.2e-30 Score=261.15 Aligned_cols=126 Identities=21% Similarity=0.248 Sum_probs=108.0
Q ss_pred cEEEeeEEEEEecCCCChHHHHHhhhcCCChhh-------------------------------------hcHHHHHHHH
Q 047286 501 DIVFEHTVALVGENGNGKSTVISLAERFHNPEQ-------------------------------------VIYSWIIIKC 543 (632)
Q Consensus 501 ~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~-------------------------------------~~~~~~~~~~ 543 (632)
+|.-++++|||||||||||||+++|.|+|+|++ ++.......+
T Consensus 58 ~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~ 137 (281)
T d1r0wa_ 58 NIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQL 137 (281)
T ss_dssp EECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCSCEEEECSSCCCCSEEHHHHHTTTSCCCHHHHHHHHHHTTC
T ss_pred EEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECCEEEEEeccccccCceeeccccccccccchHHHHHHHHHHh
Confidence 344456999999999999999999999999854 0001112255
Q ss_pred HHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh------------------------------------hccccc
Q 047286 544 TNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY------------------------------------CGCGSP 587 (632)
Q Consensus 544 ~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~------------------------------------~~iahr 587 (632)
.+++..+|++++|.++++|.+||||||||+|||||+++ |++||+
T Consensus 138 ~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~ 217 (281)
T d1r0wa_ 138 QQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSK 217 (281)
T ss_dssp HHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSC
T ss_pred HHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhhcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEech
Confidence 68999999999999999999999999999999999765 789999
Q ss_pred hhhhhcCCEEEEEeCCeEeeecChHHHhccCCchhHHHHH
Q 047286 588 PYHYKNADITSVVKNGVIAEKGRHDALMKITDGTYASLTA 627 (632)
Q Consensus 588 l~~~~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~~ 627 (632)
++.++.||||+||++|+|++.|||+||++. ++.|++.+.
T Consensus 218 ~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~-~~~~~~~~~ 256 (281)
T d1r0wa_ 218 MEHLRKADKILILHQGSSYFYGTFSELQSL-RPDFSSKLM 256 (281)
T ss_dssp HHHHHTCSEEEEEETTEEEEEECHHHHHHH-CHHHHHHHH
T ss_pred HHHHHhCCEEEEEECCEEEEECCHHHHhcc-CcHHHHHHc
Confidence 999999999999999999999999999987 788877653
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.96 E-value=2e-29 Score=244.33 Aligned_cols=167 Identities=19% Similarity=0.292 Sum_probs=135.1
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC------------------cHHhhcceEEEcccCccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA------------------PEAEQEKIGLVSKEPIFLFCDFNEGQ 146 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~------------------~~~~r~~i~~v~Q~~~~~~~~~~~~~ 146 (632)
.+||+|++||+++|+||||||||||+++|.|+...+ ....|+++|||||++.+|. .++..+
T Consensus 23 ~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L~p-~ltv~e 101 (242)
T d1oxxk2 23 NVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYP-NLTAFE 101 (242)
T ss_dssp EEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCT-TSCHHH
T ss_pred ceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhhccceEEeccccccc-cccHHH
Confidence 399999999999999999999999999998653221 1113678999999997654 344444
Q ss_pred ccccCCC--CCC----HHHHHHHHHHccchhh----HhhCCcccccccc-----------------cCCCCHHHHHHHHH
Q 047286 147 YIPYGKQ--NAS----DEHIRPAVQLANAEKS----IDKLPLGLDTVVA-----------------TNAVDAQSERIVQA 199 (632)
Q Consensus 147 ~i~~~~~--~~~----~~~~~~~~~~~~l~~~----i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~ 199 (632)
|+.++.. ..+ ++++.++++.+++++. ..+||+|++++++ |++||+.++..+++
T Consensus 102 ni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~ 181 (242)
T d1oxxk2 102 NIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARA 181 (242)
T ss_dssp HHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHH
T ss_pred HhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHH
Confidence 7776532 223 3457788888887654 5678889988883 99999999999999
Q ss_pred HHHHHh-C-CceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhcCCCcHHH
Q 047286 200 AMVKLV-T-NQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIEDPEGAYS 252 (632)
Q Consensus 200 ~l~~~~-~-~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~~~~~~~~ 252 (632)
.|+++. + +.|+|++||+++.+. .||||++|++|+|+++|+++|+.++|.+.|.
T Consensus 182 ~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~~P~~~~~ 237 (242)
T d1oxxk2 182 LVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQV 237 (242)
T ss_dssp HHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSSHHH
T ss_pred HHHHHHhccCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHHH
Confidence 999984 3 889999999998875 5999999999999999999999998877664
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=99.96 E-value=2.4e-29 Score=244.10 Aligned_cols=167 Identities=20% Similarity=0.309 Sum_probs=134.4
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcH-------------------HhhcceEEEcccCccccccccccc
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPE-------------------AEQEKIGLVSKEPIFLFCDFNEGQ 146 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~-------------------~~r~~i~~v~Q~~~~~~~~~~~~~ 146 (632)
+||+|++||+++|+||||||||||+++|.|+...+.. ..|+++|||+|++.+|. .++..+
T Consensus 22 vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L~~-~ltV~e 100 (240)
T d1g2912 22 MSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYP-HMTVYD 100 (240)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCT-TSCHHH
T ss_pred eeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcccccccceecccchhhcc-hhhhhH
Confidence 9999999999999999999999999999866432110 12567999999997654 344444
Q ss_pred ccccCC--CCCC----HHHHHHHHHHccchhh----HhhCCcccccccc-----------------cCCCCHHHHHHHHH
Q 047286 147 YIPYGK--QNAS----DEHIRPAVQLANAEKS----IDKLPLGLDTVVA-----------------TNAVDAQSERIVQA 199 (632)
Q Consensus 147 ~i~~~~--~~~~----~~~~~~~~~~~~l~~~----i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~ 199 (632)
|+.++. ...+ ++++.++++.+++.+. ..+||+|++++++ |++||+.++..+++
T Consensus 101 ni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~ 180 (240)
T d1g2912 101 NIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRA 180 (240)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHH
T ss_pred hhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHH
Confidence 676542 1122 3457778888877654 5678889998883 99999999999999
Q ss_pred HHHHHh-C-CceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcCCCcHHHH
Q 047286 200 AMVKLV-T-NQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIEDPEGAYSQ 253 (632)
Q Consensus 200 ~l~~~~-~-~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~~~~~~~~ 253 (632)
.|+++. + +.|+|++||+++.+.. ||||++|++|+|++.|+++|++.+|.+.|..
T Consensus 181 ~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~~~P~~~~~~ 237 (240)
T d1g2912 181 ELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTFVA 237 (240)
T ss_dssp HHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBHHHH
T ss_pred HHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHHHH
Confidence 999985 3 8899999999998865 9999999999999999999999988877753
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=99.96 E-value=2.6e-29 Score=241.76 Aligned_cols=165 Identities=21% Similarity=0.312 Sum_probs=135.2
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC-------------cHHhhcceEEEcccCccccc-cccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA-------------PEAEQEKIGLVSKEPIFLFC-DFNEGQYIPY 150 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~-------------~~~~r~~i~~v~Q~~~~~~~-~~~~~~~i~~ 150 (632)
++||+|++||+++|+||||||||||+++|.|+...+ ....++++|||||++.+|.. ++.+ |+.+
T Consensus 18 ~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~e--nl~~ 95 (229)
T d3d31a2 18 NLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKK--NLEF 95 (229)
T ss_dssp EEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHH--HHHH
T ss_pred eeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchhHhcceeeccccccCccccHHH--HHHH
Confidence 399999999999999999999999999999764321 12246789999999987643 4444 6765
Q ss_pred CC---CCCCHHHHHHHHHHccchh----hHhhCCcccccccc-----------------cCCCCHHHHHHHHHHHHHHh-
Q 047286 151 GK---QNASDEHIRPAVQLANAEK----SIDKLPLGLDTVVA-----------------TNAVDAQSERIVQAAMVKLV- 205 (632)
Q Consensus 151 ~~---~~~~~~~~~~~~~~~~l~~----~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~~l~~~~- 205 (632)
+. .....+++.++++..++.+ ...+||+|++++++ |++|||.++..+++.|+++.
T Consensus 96 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~ 175 (229)
T d3d31a2 96 GMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHK 175 (229)
T ss_dssp HHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHH
T ss_pred HHhhccccHHHHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHh
Confidence 42 2235678888999888654 45678889988883 99999999999999999984
Q ss_pred C-CceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcCCCcHH
Q 047286 206 T-NQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIEDPEGAY 251 (632)
Q Consensus 206 ~-~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~~~~~~ 251 (632)
+ +.|+|++||+++.+.. ||||++|++|+|+++|+++|++++|...+
T Consensus 176 ~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~P~~~~ 223 (229)
T d3d31a2 176 KNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGR 223 (229)
T ss_dssp HTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTH
T ss_pred cCCcEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHH
Confidence 3 7899999999988865 99999999999999999999998876554
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=9.6e-30 Score=246.86 Aligned_cols=166 Identities=20% Similarity=0.359 Sum_probs=132.7
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC---------------cH---HhhcceEEEcccCccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA---------------PE---AEQEKIGLVSKEPIFLFCDFNEGQ 146 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~---------------~~---~~r~~i~~v~Q~~~~~~~~~~~~~ 146 (632)
++||+|++||+++|+||||||||||+++|.|+...+ +. ..|+++|||||++.+|+ ..+..+
T Consensus 23 ~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l~~-~~tv~e 101 (240)
T d3dhwc1 23 NVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLS-SRTVFG 101 (240)
T ss_dssp EEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHHHHEEECCSSCCCCT-TSBHHH
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhhhccccccccccccCC-CccHHH
Confidence 399999999999999999999999999998764321 11 24678999999997654 333334
Q ss_pred ccccC-----CC-CCCHHHHHHHHHHccchhh----HhhCCcccccccc-----------------cCCCCHHHHHHHHH
Q 047286 147 YIPYG-----KQ-NASDEHIRPAVQLANAEKS----IDKLPLGLDTVVA-----------------TNAVDAQSERIVQA 199 (632)
Q Consensus 147 ~i~~~-----~~-~~~~~~~~~~~~~~~l~~~----i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~ 199 (632)
|+.++ .. ....+++.++++.+++.+. ..+||+|++++++ |++||+.++..+++
T Consensus 102 ni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~ 181 (240)
T d3dhwc1 102 NVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILE 181 (240)
T ss_dssp HHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHH
Confidence 66543 11 1124567888998887654 4567788888883 99999999999999
Q ss_pred HHHHHh-C-CceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcCCCcHH
Q 047286 200 AMVKLV-T-NQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIEDPEGAY 251 (632)
Q Consensus 200 ~l~~~~-~-~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~~~~~~ 251 (632)
.|+++. + +.|+|+|||++..+.. ||||++|++|+|+++|+++|++++|.+.|
T Consensus 182 ~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~~P~~~~ 236 (240)
T d3dhwc1 182 LLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPL 236 (240)
T ss_dssp HHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTCSSCCTT
T ss_pred HHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCChH
Confidence 999985 3 7899999999998865 99999999999999999999998776555
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.95 E-value=1.2e-28 Score=246.49 Aligned_cols=163 Identities=21% Similarity=0.313 Sum_probs=134.1
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHH----hhcceEEEcccCcccccccccccccccCCCCCCHHHHH
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAPEA----EQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIR 161 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~----~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 161 (632)
+||+|++||++||+||||||||||+++|.| .+.|.+ +..+++|++|++++|.+++.+ |+.++. .....++.
T Consensus 55 isl~i~~Ge~vaivG~nGsGKSTLl~~i~G--l~~p~~G~I~~~g~i~~v~Q~~~l~~~tv~e--ni~~~~-~~~~~~~~ 129 (281)
T d1r0wa_ 55 INLNIEKGEMLAITGSTGSGKTSLLMLILG--ELEASEGIIKHSGRVSFCSQFSWIMPGTIKE--NIIFGV-SYDEYRYK 129 (281)
T ss_dssp EEEEECTTCEEEEEESTTSSHHHHHHHHHT--SSCCSEEEEECCSCEEEECSSCCCCSEEHHH--HHTTTS-CCCHHHHH
T ss_pred eEEEEcCCCEEEEECCCCChHHHHHHHHhC--CCcCCCcEEEECCEEEEEeccccccCceeec--cccccc-cccchHHH
Confidence 999999999999999999999999999995 444443 345799999999999998887 688775 35677788
Q ss_pred HHHHHccchhhHhhCCccccc---------------cc-----------------ccCCCCHHHHHHHHHH-HHHHhCCc
Q 047286 162 PAVQLANAEKSIDKLPLGLDT---------------VV-----------------ATNAVDAQSERIVQAA-MVKLVTNQ 208 (632)
Q Consensus 162 ~~~~~~~l~~~i~~l~~g~~~---------------~v-----------------~ts~LD~~~~~~i~~~-l~~~~~~~ 208 (632)
++++.+.+..++..+|.++++ ++ +|++||+.+++.+++. +..+.+++
T Consensus 130 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~~~~~ 209 (281)
T d1r0wa_ 130 SVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANK 209 (281)
T ss_dssp HHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCCTTTS
T ss_pred HHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhhcCccccCCHHHHHHHHHHHHHHhhCCC
Confidence 888888877777666655544 43 3999999999988875 44445689
Q ss_pred eEEEEecCchHHhhcCeEEEEeCCeEEEecChhHHhcCCCcHHHHH
Q 047286 209 TVVIVANCLITIRNADCIIMVSKGKIVEKGTHDELIEDPEGAYSQL 254 (632)
Q Consensus 209 tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~~el~~~~~~~~~~~ 254 (632)
|+|+|||+++.++.||||++|++|+|+++|+|+|++.. ++.|...
T Consensus 210 tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~-~~~~~~~ 254 (281)
T d1r0wa_ 210 TRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSL-RPDFSSK 254 (281)
T ss_dssp EEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHH-CHHHHHH
T ss_pred EEEEEechHHHHHhCCEEEEEECCEEEEECCHHHHhcc-CcHHHHH
Confidence 99999999999999999999999999999999999864 4455443
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.95 E-value=4.6e-28 Score=234.03 Aligned_cols=168 Identities=23% Similarity=0.331 Sum_probs=132.7
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC-------------cHHhhcceEEEcccCcccccccccccccccCC
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA-------------PEAEQEKIGLVSKEPIFLFCDFNEGQYIPYGK 152 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~-------------~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~ 152 (632)
+||+++ +|+++|+||||||||||+++|.|+.... ....+++||||||++.+|. .++..+|+.++.
T Consensus 18 vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~-~ltV~enl~~~l 95 (240)
T d2onka1 18 VDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFP-HLSVYRNIAYGL 95 (240)
T ss_dssp EEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCT-TSCHHHHHHTTC
T ss_pred EEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHHHcCceeeccchhhcc-cchhhHhhhhhh
Confidence 777775 6899999999999999999999653221 1124678999999998764 334444788875
Q ss_pred CCCC----HHHHHHHHHHccchh----hHhhCCcccccccc-----------------cCCCCHHHHHHHHHHHHHHhC-
Q 047286 153 QNAS----DEHIRPAVQLANAEK----SIDKLPLGLDTVVA-----------------TNAVDAQSERIVQAAMVKLVT- 206 (632)
Q Consensus 153 ~~~~----~~~~~~~~~~~~l~~----~i~~l~~g~~~~v~-----------------ts~LD~~~~~~i~~~l~~~~~- 206 (632)
...+ ++++.++++.+++.+ ...+||+|++++++ |++|||.++..+++.|+++.+
T Consensus 96 ~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~ 175 (240)
T d2onka1 96 RNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQRE 175 (240)
T ss_dssp TTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHHHHHHHHHHHHHh
Confidence 5443 345777888887654 46678889988883 999999999999999999853
Q ss_pred -CceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcCCCcHHHHHH
Q 047286 207 -NQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIEDPEGAYSQLV 255 (632)
Q Consensus 207 -~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~ 255 (632)
+.|+|++||+++.+.. ||||++|++|+|++.|+++|+.+.++.....++
T Consensus 176 ~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~~~~v~~fl 226 (240)
T d2onka1 176 FDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFL 226 (240)
T ss_dssp HTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCCSSHHHHG
T ss_pred cCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEecHHHHhcCCCHHHHHHh
Confidence 7899999999988865 999999999999999999999887655444443
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=99.95 E-value=6e-28 Score=238.04 Aligned_cols=168 Identities=20% Similarity=0.245 Sum_probs=133.4
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCCc----------------------------HHhhcceEEEcccCc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYAP----------------------------EAEQEKIGLVSKEPI 136 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~----------------------------~~~r~~i~~v~Q~~~ 136 (632)
.+||+|++||+++|+||||||||||+++|.|+...+. ...|+++|||||+|.
T Consensus 20 ~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~ 99 (258)
T d1b0ua_ 20 GVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFN 99 (258)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCC
T ss_pred ceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhcccccHhHHHHHhcceEEEEechh
Confidence 3999999999999999999999999999986532110 125678999999997
Q ss_pred ccccccccccccccC---CCCCC----HHHHHHHHHHccchh-----hHhhCCccccccc-----------------ccC
Q 047286 137 FLFCDFNEGQYIPYG---KQNAS----DEHIRPAVQLANAEK-----SIDKLPLGLDTVV-----------------ATN 187 (632)
Q Consensus 137 ~~~~~~~~~~~i~~~---~~~~~----~~~~~~~~~~~~l~~-----~i~~l~~g~~~~v-----------------~ts 187 (632)
++. .++..+|+.++ ....+ .+++.++++.+++.+ ...+||+|+++++ +|+
T Consensus 100 l~~-~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv~iAraL~~~P~llilDEPT~ 178 (258)
T d1b0ua_ 100 LWS-HMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTS 178 (258)
T ss_dssp CCT-TSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTT
T ss_pred hcc-chhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccccHHHHHHHHHHHHHhcCCCEEEeccccc
Confidence 654 33333366543 11222 345677778877644 3567889998888 399
Q ss_pred CCCHHHHHHHHHHHHHHh-CCceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcCCCcHHHH
Q 047286 188 AVDAQSERIVQAAMVKLV-TNQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIEDPEGAYSQ 253 (632)
Q Consensus 188 ~LD~~~~~~i~~~l~~~~-~~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~~~~~~~~ 253 (632)
+||+.+++.+++.|+++. ++.|+|+||||++.+.. ||||++|++|+|+++|+++|++.+|.+.|.+
T Consensus 179 gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv~~g~~~ev~~~P~~~~~~ 246 (258)
T d1b0ua_ 179 ALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGNPQSPRLQ 246 (258)
T ss_dssp TSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCCSHHHH
T ss_pred cCCHHHHHHHHHhhhhhcccCCceEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHHHH
Confidence 999999999999999985 47899999999998875 9999999999999999999999988887764
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.94 E-value=5.9e-28 Score=232.96 Aligned_cols=155 Identities=23% Similarity=0.321 Sum_probs=120.4
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC---------------cHH---h-hcceEEEcccCcccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA---------------PEA---E-QEKIGLVSKEPIFLFCDFNEG 145 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~---------------~~~---~-r~~i~~v~Q~~~~~~~~~~~~ 145 (632)
.+||+|++||+++|+||||||||||+++|.|+..++ +.+ . |++||||+|++.+++ ..+..
T Consensus 23 ~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~l~~-~~tv~ 101 (230)
T d1l2ta_ 23 NVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIP-LLTAL 101 (230)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCT-TSCHH
T ss_pred ceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchhhcceEEEEecchhhCc-CccHH
Confidence 399999999999999999999999999998653221 111 1 457999999997654 33333
Q ss_pred cccccC-----CCCCC----HHHHHHHHHHccchh-----hHhhCCcccccccc-----------------cCCCCHHHH
Q 047286 146 QYIPYG-----KQNAS----DEHIRPAVQLANAEK-----SIDKLPLGLDTVVA-----------------TNAVDAQSE 194 (632)
Q Consensus 146 ~~i~~~-----~~~~~----~~~~~~~~~~~~l~~-----~i~~l~~g~~~~v~-----------------ts~LD~~~~ 194 (632)
+|+.++ ....+ .+++.+.++..++.+ ...+||+|++++|+ |++||+.++
T Consensus 102 eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~ 181 (230)
T d1l2ta_ 102 ENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTG 181 (230)
T ss_dssp HHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHH
T ss_pred HHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHHHHhhhhcCCCEEEecCCccccCHHHH
Confidence 355542 11223 234556777777643 35678999999883 999999999
Q ss_pred HHHHHHHHHHh-C-CceEEEEecCchHHhhcCeEEEEeCCeEEEecCh
Q 047286 195 RIVQAAMVKLV-T-NQTVVIVANCLITIRNADCIIMVSKGKIVEKGTH 240 (632)
Q Consensus 195 ~~i~~~l~~~~-~-~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g~~ 240 (632)
+.+++.|+++. + +.|+|+|||+++.++.||||++|++|+|+++|+.
T Consensus 182 ~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 182 EKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHHHHhhCCEEEEECCCHHHHHhCCEEEEEECCEEEEeccC
Confidence 99999999984 3 7899999999998888999999999999999864
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=99.93 E-value=1.3e-26 Score=225.84 Aligned_cols=160 Identities=20% Similarity=0.354 Sum_probs=126.8
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC--------------CcHHhhcceEEEcccCcccccccccccccccC
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY--------------APEAEQEKIGLVSKEPIFLFCDFNEGQYIPYG 151 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~--------------~~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~ 151 (632)
+||+|++||++||+||||||||||+++|.|+... .+...++.++|+||++.+|. .++..+|+.+.
T Consensus 21 vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i~~vpq~~~~~~-~ltv~e~l~~~ 99 (238)
T d1vpla_ 21 ISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYR-NMQGIEYLRFV 99 (238)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCT-TSBHHHHHHHH
T ss_pred ceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccChHHHHhhEeEeeeccccCC-CccHHHHHHHH
Confidence 9999999999999999999999999999865322 23346789999999986543 34433355432
Q ss_pred C--CCCCH----HHHHHHHHHccch----hhHhhCCccccccc-----------------ccCCCCHHHHHHHHHHHHHH
Q 047286 152 K--QNASD----EHIRPAVQLANAE----KSIDKLPLGLDTVV-----------------ATNAVDAQSERIVQAAMVKL 204 (632)
Q Consensus 152 ~--~~~~~----~~~~~~~~~~~l~----~~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l~~~ 204 (632)
. ..... +.++++++.+++. +.+..||+|+++++ +|+||||.+++.+++.|+++
T Consensus 100 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~ 179 (238)
T d1vpla_ 100 AGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQA 179 (238)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHH
Confidence 1 11222 3455666666654 45788999998887 39999999999999999998
Q ss_pred h-CCceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcC
Q 047286 205 V-TNQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIED 246 (632)
Q Consensus 205 ~-~~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~ 246 (632)
. +|+|+|++||+++.+.. ||||++|++|+|+++|+++++.++
T Consensus 180 ~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 223 (238)
T d1vpla_ 180 SQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 223 (238)
T ss_dssp HHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhc
Confidence 5 57899999999999875 999999999999999999999753
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=99.93 E-value=3.6e-26 Score=223.18 Aligned_cols=161 Identities=18% Similarity=0.252 Sum_probs=122.6
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC--------------cHH--hhcceEEEcccCccccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA--------------PEA--EQEKIGLVSKEPIFLFCDFNEGQYI 148 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~--------------~~~--~r~~i~~v~Q~~~~~~~~~~~~~~i 148 (632)
.+||+|++||+++|+||||||||||+++|.|+..++ +.. .|..++|+||++.+|. .++..+|+
T Consensus 24 ~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~~-~ltv~en~ 102 (240)
T d1ji0a_ 24 GIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFP-ELTVYENL 102 (240)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCT-TSBHHHHH
T ss_pred eeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHhcccccCcccccCC-cccHHHHH
Confidence 399999999999999999999999999998763321 111 2445999999987664 33333355
Q ss_pred ccCCC---CC--CHHHHHHHHHHc-cc----hhhHhhCCccccccc-----------------ccCCCCHHHHHHHHHHH
Q 047286 149 PYGKQ---NA--SDEHIRPAVQLA-NA----EKSIDKLPLGLDTVV-----------------ATNAVDAQSERIVQAAM 201 (632)
Q Consensus 149 ~~~~~---~~--~~~~~~~~~~~~-~l----~~~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l 201 (632)
.++.. .. ..+++.++++.. ++ ++...+||+|+++++ +|+||||.+++.+++.|
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i 182 (240)
T d1ji0a_ 103 MMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVI 182 (240)
T ss_dssp HGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHhhChHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHH
Confidence 44321 11 123344444443 33 344567999999888 39999999999999999
Q ss_pred HHHh-CCceEEEEecCchHHhh-cCeEEEEeCCeEEEecChhHHhcC
Q 047286 202 VKLV-TNQTVVIVANCLITIRN-ADCIIMVSKGKIVEKGTHDELIED 246 (632)
Q Consensus 202 ~~~~-~~~tviiitH~~~~~~~-aD~i~vl~~G~i~~~g~~~el~~~ 246 (632)
++++ +|.|++++||+++.+.. ||||++|++|+|+++|+++|+.++
T Consensus 183 ~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 229 (240)
T d1ji0a_ 183 QKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp HHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred HHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC
Confidence 9985 57899999999988755 999999999999999999999865
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.92 E-value=4.7e-26 Score=224.67 Aligned_cols=160 Identities=20% Similarity=0.245 Sum_probs=123.7
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC---------------CcHH-hhcceEEEcccCccccccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY---------------APEA-EQEKIGLVSKEPIFLFCDFNEGQYI 148 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~---------------~~~~-~r~~i~~v~Q~~~~~~~~~~~~~~i 148 (632)
.+||+|++||+++|+||||||||||+++|.|+... .|.+ .+..|+|+||++.+|. .++..+|+
T Consensus 22 ~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~~-~ltv~enl 100 (254)
T d1g6ha_ 22 GVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLK-EMTVLENL 100 (254)
T ss_dssp EECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGG-GSBHHHHH
T ss_pred ceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhcCCccCCccccCC-CCeeeeee
Confidence 39999999999999999999999999999865321 2222 3446999999997653 33333356
Q ss_pred ccCCC----------------CCC---HHHHHHHHHHccch----hhHhhCCccccccc-----------------ccCC
Q 047286 149 PYGKQ----------------NAS---DEHIRPAVQLANAE----KSIDKLPLGLDTVV-----------------ATNA 188 (632)
Q Consensus 149 ~~~~~----------------~~~---~~~~~~~~~~~~l~----~~i~~l~~g~~~~v-----------------~ts~ 188 (632)
.++.. ... .++..++++..++. ..+.+||+|.++++ +|+|
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~Qrv~iAraL~~~P~llilDEPt~g 180 (254)
T d1g6ha_ 101 LIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAG 180 (254)
T ss_dssp HGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTT
T ss_pred eehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchhhCCcHHHHHHHHHHHHHhCcCchhhcCCccc
Confidence 54311 011 23455566666654 45778999999888 3999
Q ss_pred CCHHHHHHHHHHHHHHh-CCceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhc
Q 047286 189 VDAQSERIVQAAMVKLV-TNQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIE 245 (632)
Q Consensus 189 LD~~~~~~i~~~l~~~~-~~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~ 245 (632)
||+.+++.+++.|++++ +|.|++++||+++.+. .||||++|++|+|+++|+++|+.+
T Consensus 181 LD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g~~~e~~~ 239 (254)
T d1g6ha_ 181 VAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIK 239 (254)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhCCEEEEEeCCEEEEEecHHHHhh
Confidence 99999999999999985 5789999999998875 599999999999999999998753
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=3e-24 Score=208.74 Aligned_cols=160 Identities=17% Similarity=0.247 Sum_probs=124.3
Q ss_pred cEEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCC--------------CcHHhhcceEEEcccCcccc-cccccccccc
Q 047286 85 RFLQHVPSGTTVALVGQSGSGKSTVINLVESFRFY--------------APEAEQEKIGLVSKEPIFLF-CDFNEGQYIP 149 (632)
Q Consensus 85 ~~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~--------------~~~~~r~~i~~v~Q~~~~~~-~~~~~~~~i~ 149 (632)
.+||+|++||+++|+||||||||||+++|.|+... .+.+++...+|++|+....+ .++.+ ++.
T Consensus 17 ~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~ 94 (231)
T d1l7vc_ 17 PLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWH--YLT 94 (231)
T ss_dssp SEEEEEETTCEEECBCCTTSSHHHHHHHHHTSCCCSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHHH--HHH
T ss_pred CEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCceEEEECCEECCcCCHHHHHhhceeeeccccCCccccHHH--Hhh
Confidence 49999999999999999999999999999875321 12335567899999865332 22222 344
Q ss_pred cCCC-CCCHHHHHHHHHHccchhh----HhhCCccccccc------------------------ccCCCCHHHHHHHHHH
Q 047286 150 YGKQ-NASDEHIRPAVQLANAEKS----IDKLPLGLDTVV------------------------ATNAVDAQSERIVQAA 200 (632)
Q Consensus 150 ~~~~-~~~~~~~~~~~~~~~l~~~----i~~l~~g~~~~v------------------------~ts~LD~~~~~~i~~~ 200 (632)
++.. ....+.+.++++..++.+. +..||+|+++++ +|++||+.++..+.+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~ 174 (231)
T d1l7vc_ 95 LHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKI 174 (231)
T ss_dssp HHCSCTTCHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHH
T ss_pred hccchhhHHHHHHHHHHhcCCHhHhCcChhhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHHH
Confidence 4333 3346667788888776544 567888876554 3899999999999999
Q ss_pred HHHHh-CCceEEEEecCchHHh-hcCeEEEEeCCeEEEecChhHHhcC
Q 047286 201 MVKLV-TNQTVVIVANCLITIR-NADCIIMVSKGKIVEKGTHDELIED 246 (632)
Q Consensus 201 l~~~~-~~~tviiitH~~~~~~-~aD~i~vl~~G~i~~~g~~~el~~~ 246 (632)
|+++. ++.|+|++||+++.+. .||||++|++|+|+++|+++|++.+
T Consensus 175 i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~ 222 (231)
T d1l7vc_ 175 LSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP 222 (231)
T ss_dssp HHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCH
T ss_pred HHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEECCHHHHhCC
Confidence 99985 5789999999998765 5999999999999999999999754
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.89 E-value=1.7e-23 Score=201.80 Aligned_cols=120 Identities=26% Similarity=0.318 Sum_probs=94.2
Q ss_pred eEEEEEecCCCChHHHHHhhhcCCChhh--------------------------------hcHH-------------HHH
Q 047286 506 HTVALVGENGNGKSTVISLAERFHNPEQ--------------------------------VIYS-------------WII 540 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r~y~~~~--------------------------------~~~~-------------~~~ 540 (632)
+.+||+||||||||||+++|.|+++|++ +... ...
T Consensus 25 e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~~l~~~~~~~~~ 104 (240)
T d2onka1 25 DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERD 104 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHHHH
T ss_pred EEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHHHcCceeeccchhhcccchhhHhhhhhhcccCHHHHH
Confidence 5899999999999999999999998843 0000 001
Q ss_pred HHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh-------------------------------------hc
Q 047286 541 IKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY-------------------------------------CG 583 (632)
Q Consensus 541 ~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~-------------------------------------~~ 583 (632)
..+.+.+..+ |++.........||||||||+|||||+.. ++
T Consensus 105 ~~v~~~l~~~--gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~ 182 (240)
T d2onka1 105 RRVREMAEKL--GIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILH 182 (240)
T ss_dssp HHHHHHHHTT--TCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHhc--CcHhhhhCChhhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 1334455444 66666667778999999999999999654 78
Q ss_pred cccchhhhh-cCCEEEEEeCCeEeeecChHHHhccCCchhHHHHH
Q 047286 584 CGSPPYHYK-NADITSVVKNGVIAEKGRHDALMKITDGTYASLTA 627 (632)
Q Consensus 584 iahrl~~~~-~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~~l~~ 627 (632)
+||.+..+. .||+|+||++|+|+++|+++||++.++..+++++.
T Consensus 183 vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~~~~v~~fl~ 227 (240)
T d2onka1 183 VTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFLS 227 (240)
T ss_dssp EESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCCSSHHHHGG
T ss_pred EeCCHHHHHHhCCEEEEEECCEEEEEecHHHHhcCCCHHHHHHhC
Confidence 899988775 59999999999999999999999876776666653
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=99.88 E-value=1.5e-23 Score=202.87 Aligned_cols=120 Identities=21% Similarity=0.309 Sum_probs=87.9
Q ss_pred cEEEeeEEEEEecCCCChHHHHHhhhcCCChhh--------------------------------------------hcH
Q 047286 501 DIVFEHTVALVGENGNGKSTVISLAERFHNPEQ--------------------------------------------VIY 536 (632)
Q Consensus 501 ~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~--------------------------------------------~~~ 536 (632)
+|+-++++||+||||||||||+++|.|+++|++ +..
T Consensus 25 ~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~ 104 (240)
T d1g2912 25 EVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAF 104 (240)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHH
T ss_pred EEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcccccccceecccchhhcchhhhhHhhhh
Confidence 444456999999999999999999999998843 000
Q ss_pred HHH---------HHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh--------------------------
Q 047286 537 SWI---------IIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY-------------------------- 581 (632)
Q Consensus 537 ~~~---------~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~-------------------------- 581 (632)
... ...+.+.+..+ |+.........+||||||||++||||+..
T Consensus 105 ~~~~~~~~~~e~~~~v~~~l~~~--~l~~~~~~~p~~LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l 182 (240)
T d1g2912 105 PLKLRKVPRQEIDQRVREVAELL--GLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAEL 182 (240)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHH--TCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHH
T ss_pred hHHHcCCCHHHHHHHHHHHHHHc--CChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHH
Confidence 000 00122222221 22223344556799999999999999654
Q ss_pred -----------hccccchhhhhc-CCEEEEEeCCeEeeecChHHHhccCCchh
Q 047286 582 -----------CGCGSPPYHYKN-ADITSVVKNGVIAEKGRHDALMKITDGTY 622 (632)
Q Consensus 582 -----------~~iahrl~~~~~-aD~I~vl~~G~ive~G~h~eL~~~~~g~y 622 (632)
+++||.+..+.. ||||+||++|+|++.||++|+++++.-.|
T Consensus 183 ~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~~~P~~~~ 235 (240)
T d1g2912 183 KKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTF 235 (240)
T ss_dssp HHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBHH
T ss_pred HHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHH
Confidence 789999998865 99999999999999999999998755445
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.88 E-value=2e-23 Score=201.77 Aligned_cols=120 Identities=20% Similarity=0.213 Sum_probs=92.3
Q ss_pred EEEeeEEEEEecCCCChHHHHHhhhcCCChhh--------------------------------hc--------------
Q 047286 502 IVFEHTVALVGENGNGKSTVISLAERFHNPEQ--------------------------------VI-------------- 535 (632)
Q Consensus 502 I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~--------------------------------~~-------------- 535 (632)
|+-++++||+||||||||||+++|.|+++|++ +.
T Consensus 29 v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~ 108 (239)
T d1v43a3 29 IKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKF 108 (239)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--CC
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcccceEEEEeechhhcccchHHHHHHHHHHHcCC
Confidence 33345899999999999999999999999854 00
Q ss_pred -HHHHHHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh---------------------------------
Q 047286 536 -YSWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY--------------------------------- 581 (632)
Q Consensus 536 -~~~~~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~--------------------------------- 581 (632)
.......+.+.+..+ |++........+||||||||+|||||+..
T Consensus 109 ~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~ 186 (239)
T d1v43a3 109 PKDEIDKRVRWAAELL--QIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKL 186 (239)
T ss_dssp CHHHHHHHHHHHHHHT--TCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhc
Confidence 000011333444444 55555667778999999999999999544
Q ss_pred ----hccccchhhhh-cCCEEEEEeCCeEeeecChHHHhccCCchhH
Q 047286 582 ----CGCGSPPYHYK-NADITSVVKNGVIAEKGRHDALMKITDGTYA 623 (632)
Q Consensus 582 ----~~iahrl~~~~-~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~ 623 (632)
+++||.+..+. -||||++|++|+|+++|+.+|+.+++.-.|-
T Consensus 187 g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~~~~ 233 (239)
T d1v43a3 187 KVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFV 233 (239)
T ss_dssp TCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSBHHH
T ss_pred CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHHH
Confidence 78899999885 5999999999999999999999987555554
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.88 E-value=2.1e-23 Score=201.66 Aligned_cols=121 Identities=20% Similarity=0.218 Sum_probs=91.8
Q ss_pred cEEEeeEEEEEecCCCChHHHHHhhhcCCChhh-------------------------------------hcHHH-----
Q 047286 501 DIVFEHTVALVGENGNGKSTVISLAERFHNPEQ-------------------------------------VIYSW----- 538 (632)
Q Consensus 501 ~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~-------------------------------------~~~~~----- 538 (632)
+|+-++++||+||||||||||+++|.|+++|++ +....
T Consensus 27 ~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~ 106 (242)
T d1oxxk2 27 NIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFP 106 (242)
T ss_dssp EECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGG
T ss_pred EECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhhccceEEeccccccccccHHHHhhhh
Confidence 334446899999999999999999999998843 00000
Q ss_pred ----------HHHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh---------------------------
Q 047286 539 ----------IIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY--------------------------- 581 (632)
Q Consensus 539 ----------~~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~--------------------------- 581 (632)
....+.+.+..+ |++........+||||||||+|||||+..
T Consensus 107 l~~~~~~~~~~~~~v~~~l~~~--gL~~~~~~~p~~LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~ 184 (242)
T d1oxxk2 107 LTNMKMSKEEIRKRVEEVAKIL--DIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVK 184 (242)
T ss_dssp GTTSSCCHHHHHHHHHHHHHHT--TCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHH
T ss_pred hHhhcCCHHHHHHHHHHHHhhc--ChHhhhhCChhhCCHHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHH
Confidence 011233444443 45555566677899999999999999654
Q ss_pred ----------hccccchhhh-hcCCEEEEEeCCeEeeecChHHHhccCCchhH
Q 047286 582 ----------CGCGSPPYHY-KNADITSVVKNGVIAEKGRHDALMKITDGTYA 623 (632)
Q Consensus 582 ----------~~iahrl~~~-~~aD~I~vl~~G~ive~G~h~eL~~~~~g~y~ 623 (632)
+++||.++.+ +.||||++|++|+|+|.|+.+||.+++...|-
T Consensus 185 ~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~~P~~~~~ 237 (242)
T d1oxxk2 185 EVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQV 237 (242)
T ss_dssp HHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSSHHH
T ss_pred HHHhccCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHHH
Confidence 7899999987 56999999999999999999999987555553
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.88 E-value=1.4e-23 Score=202.25 Aligned_cols=120 Identities=21% Similarity=0.231 Sum_probs=74.5
Q ss_pred EEEeeEEEEEecCCCChHHHHHhhhcCCChhh--------------------------------------hcHHHH----
Q 047286 502 IVFEHTVALVGENGNGKSTVISLAERFHNPEQ--------------------------------------VIYSWI---- 539 (632)
Q Consensus 502 I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~--------------------------------------~~~~~~---- 539 (632)
|.-++++||+||||||||||+++|.|+++|++ +.....
T Consensus 23 i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~ 102 (232)
T d2awna2 23 IHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGA 102 (232)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEECSSCCC-------------------
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCchhhceeeeeccccccccchhHHHHHHHHHHHcCC
Confidence 33345899999999999999999999998853 000000
Q ss_pred -----HHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh---------------------------------
Q 047286 540 -----IIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY--------------------------------- 581 (632)
Q Consensus 540 -----~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~--------------------------------- 581 (632)
...+.+.+..+ |+.........+||||||||+|||||+..
T Consensus 103 ~~~~~~~~v~~~l~~~--~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~ 180 (232)
T d2awna2 103 KKEVINQRVNQVAEVL--QLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL 180 (232)
T ss_dssp --CHHHHHHHHHHHHC-----------------------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHhC--CChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhc
Confidence 11233444433 23333344556899999999999999654
Q ss_pred ----hccccchhhhhc-CCEEEEEeCCeEeeecChHHHhccCCchhH
Q 047286 582 ----CGCGSPPYHYKN-ADITSVVKNGVIAEKGRHDALMKITDGTYA 623 (632)
Q Consensus 582 ----~~iahrl~~~~~-aD~I~vl~~G~ive~G~h~eL~~~~~g~y~ 623 (632)
+++||.+..+.. ||||++|++|+|++.|+.+|+++++...|-
T Consensus 181 g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~~~v 227 (232)
T d2awna2 181 GRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFV 227 (232)
T ss_dssp CCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBHHH
T ss_pred CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCCCHHH
Confidence 788999988765 999999999999999999999987555553
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=99.87 E-value=3e-23 Score=200.87 Aligned_cols=120 Identities=23% Similarity=0.264 Sum_probs=88.8
Q ss_pred cEEEeeEEEEEecCCCChHHHHHhhhcCCChhh------------hcHHHH-----------------------------
Q 047286 501 DIVFEHTVALVGENGNGKSTVISLAERFHNPEQ------------VIYSWI----------------------------- 539 (632)
Q Consensus 501 ~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~------------~~~~~~----------------------------- 539 (632)
+|.-++++||+||||||||||+++|.|+.+|++ ......
T Consensus 27 ~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~ 106 (240)
T d3dhwc1 27 HVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALP 106 (240)
T ss_dssp EECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHH
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhhhccccccccccccCCCccHHHHHHHH
Confidence 344446899999999999999999999998854 010000
Q ss_pred -----------HHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh---------------------------
Q 047286 540 -----------IIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY--------------------------- 581 (632)
Q Consensus 540 -----------~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~--------------------------- 581 (632)
...+.+.+..+ |++........+||||||||+|||||+..
T Consensus 107 l~~~~~~~~~~~~~v~~~L~~v--gL~~~~~~~~~~LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~ 184 (240)
T d3dhwc1 107 LELDNTPKDEVKRRVTELLSLV--GLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLK 184 (240)
T ss_dssp HHTTTCCTTHHHHHHHHHHHHH--STTTTTSSCBSCCCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHH
Confidence 00112222221 33333445566899999999999999554
Q ss_pred ----------hccccchhhhhc-CCEEEEEeCCeEeeecChHHHhccCCchh
Q 047286 582 ----------CGCGSPPYHYKN-ADITSVVKNGVIAEKGRHDALMKITDGTY 622 (632)
Q Consensus 582 ----------~~iahrl~~~~~-aD~I~vl~~G~ive~G~h~eL~~~~~g~y 622 (632)
+++||.+..+.. ||||+||++|+|+|.|+.+|+++++.-.|
T Consensus 185 ~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~~P~~~~ 236 (240)
T d3dhwc1 185 DINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPL 236 (240)
T ss_dssp HHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTCSSCCTT
T ss_pred HHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCChH
Confidence 789999998865 99999999999999999999998755555
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=99.87 E-value=5.1e-23 Score=197.54 Aligned_cols=120 Identities=21% Similarity=0.258 Sum_probs=89.0
Q ss_pred cEEEeeEEEEEecCCCChHHHHHhhhcCCChhh------------hcHH--------------------------HH---
Q 047286 501 DIVFEHTVALVGENGNGKSTVISLAERFHNPEQ------------VIYS--------------------------WI--- 539 (632)
Q Consensus 501 ~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~------------~~~~--------------------------~~--- 539 (632)
+|.-++++||+||||||||||+++|.|+.+|++ .... ..
T Consensus 22 ~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~ 101 (229)
T d3d31a2 22 KVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKK 101 (229)
T ss_dssp EECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHC
T ss_pred EECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchhHhcceeeccccccCccccHHHHHHHHHhhcc
Confidence 344446899999999999999999999998854 0000 00
Q ss_pred ---HHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh-----------------------------------
Q 047286 540 ---IIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY----------------------------------- 581 (632)
Q Consensus 540 ---~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~----------------------------------- 581 (632)
...+.+.+..+ |+.........+||||||||++||||+..
T Consensus 102 ~~~~~~~~~~l~~~--~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~ 179 (229)
T d3d31a2 102 IKDPKRVLDTARDL--KIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKL 179 (229)
T ss_dssp CCCHHHHHHHHHHT--TCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHh--cchhhHhCChhhCCHHHhcchhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCc
Confidence 00222333332 34444455667899999999999999544
Q ss_pred --hccccchhhhhc-CCEEEEEeCCeEeeecChHHHhccCCchh
Q 047286 582 --CGCGSPPYHYKN-ADITSVVKNGVIAEKGRHDALMKITDGTY 622 (632)
Q Consensus 582 --~~iahrl~~~~~-aD~I~vl~~G~ive~G~h~eL~~~~~g~y 622 (632)
+++||.+..+.. ||||++|++|+|++.|+++|+++++.-.|
T Consensus 180 tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~P~~~~ 223 (229)
T d3d31a2 180 TVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGR 223 (229)
T ss_dssp EEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTH
T ss_pred EEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHH
Confidence 788999987765 99999999999999999999998754333
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.86 E-value=2.1e-22 Score=193.88 Aligned_cols=107 Identities=21% Similarity=0.267 Sum_probs=78.1
Q ss_pred cEEEeeEEEEEecCCCChHHHHHhhhcCCChhh------------hcHHHH-----------------------------
Q 047286 501 DIVFEHTVALVGENGNGKSTVISLAERFHNPEQ------------VIYSWI----------------------------- 539 (632)
Q Consensus 501 ~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~------------~~~~~~----------------------------- 539 (632)
+|+-++++||+||||||||||+++|.|+++|++ ......
T Consensus 27 ~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~ 106 (230)
T d1l2ta_ 27 NIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVEL 106 (230)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHH
T ss_pred EEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchhhcceEEEEecchhhCcCccHHHHHhH
Confidence 344456899999999999999999999998854 010000
Q ss_pred ---------------HHHHHHHHh--cCCCccCcccccCCCCCChHHHHHHHHHHHHhh---------------------
Q 047286 540 ---------------IIKCTNFIA--SLPQGSDLNVGERGLQLSGGLKQRIARTRARNY--------------------- 581 (632)
Q Consensus 540 ---------------~~~~~~~i~--~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~--------------------- 581 (632)
...+.+.+. .||+. .......+||||||||+|||||+..
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~---~~~~~p~~LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~ 183 (230)
T d1l2ta_ 107 PLIFKYRGAMSGEERRKRALECLKMAELEER---FANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEK 183 (230)
T ss_dssp HHHTCCSSCCCHHHHHHHHHHHHHHTTCCGG---GTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHH
T ss_pred HHHHhccCCCCHHHHHHHHHHHHHhhchhhh---hhcCChhhCCHHHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHH
Confidence 001112222 22322 1223456799999999999999654
Q ss_pred ----------------hccccchhhhhcCCEEEEEeCCeEeeecC
Q 047286 582 ----------------CGCGSPPYHYKNADITSVVKNGVIAEKGR 610 (632)
Q Consensus 582 ----------------~~iahrl~~~~~aD~I~vl~~G~ive~G~ 610 (632)
|++||.++..+.||||++|++|+|+|+|+
T Consensus 184 i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~ 228 (230)
T d1l2ta_ 184 IMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEK 228 (230)
T ss_dssp HHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHhhCCEEEEECCCHHHHHhCCEEEEEECCEEEEecc
Confidence 78999999999999999999999999986
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=99.85 E-value=4.5e-22 Score=195.63 Aligned_cols=123 Identities=19% Similarity=0.284 Sum_probs=88.8
Q ss_pred EEEeeEEEEEecCCCChHHHHHhhhcCCChhh---------hc-------------------------------------
Q 047286 502 IVFEHTVALVGENGNGKSTVISLAERFHNPEQ---------VI------------------------------------- 535 (632)
Q Consensus 502 I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------~~------------------------------------- 535 (632)
|.-++++||+||||||||||+++|.|+++|++ +.
T Consensus 25 i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~ 104 (258)
T d1b0ua_ 25 ARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHM 104 (258)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhcccccHhHHHHHhcceEEEEechhhccch
Confidence 33345899999999999999999999998843 00
Q ss_pred -HHHH----------------HHHHHHHHhcCCCccCccc-ccCCCCCChHHHHHHHHHHHHhh----------------
Q 047286 536 -YSWI----------------IIKCTNFIASLPQGSDLNV-GERGLQLSGGLKQRIARTRARNY---------------- 581 (632)
Q Consensus 536 -~~~~----------------~~~~~~~i~~lp~g~dt~v-ge~G~~LSgGQrQRiaiARA~~~---------------- 581 (632)
.... ...+.+.+..+ |+.... .....+||||||||+|||||+..
T Consensus 105 tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~p~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~ 182 (258)
T d1b0ua_ 105 TVLENVMEAPIQVLGLSKHDARERALKYLAKV--GIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDP 182 (258)
T ss_dssp CHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHT--TCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCH
T ss_pred hcchhhhhhHHHhcCCCHHHHHHHHHHHHHHc--CCchhhhccCcccccHHHHHHHHHHHHHhcCCCEEEeccccccCCH
Confidence 0000 00222333333 333222 22356899999999999999654
Q ss_pred --------------------hccccchhhhhc-CCEEEEEeCCeEeeecChHHHhccCCchhH-HHH
Q 047286 582 --------------------CGCGSPPYHYKN-ADITSVVKNGVIAEKGRHDALMKITDGTYA-SLT 626 (632)
Q Consensus 582 --------------------~~iahrl~~~~~-aD~I~vl~~G~ive~G~h~eL~~~~~g~y~-~l~ 626 (632)
+++||.+..+.. ||||+||++|+|+|.|+.+|+++++.-.|- .|+
T Consensus 183 ~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv~~g~~~ev~~~P~~~~~~~ll 249 (258)
T d1b0ua_ 183 ELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGNPQSPRLQQFL 249 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCCSHHHHHHH
T ss_pred HHHHHHHHhhhhhcccCCceEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHHHHHHH
Confidence 789999998864 999999999999999999999987555554 444
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=99.83 E-value=2e-21 Score=189.34 Aligned_cols=117 Identities=26% Similarity=0.245 Sum_probs=84.8
Q ss_pred cEEEeeEEEEEecCCCChHHHHHhhhcCCChhh------------hcHHHH-----------------------------
Q 047286 501 DIVFEHTVALVGENGNGKSTVISLAERFHNPEQ------------VIYSWI----------------------------- 539 (632)
Q Consensus 501 ~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~------------~~~~~~----------------------------- 539 (632)
+|.-++++||+||+|||||||+++|.|+++|++ ......
T Consensus 28 ~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~ 107 (240)
T d1ji0a_ 28 KVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAY 107 (240)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGT
T ss_pred EECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHhcccccCcccccCCcccHHHHHHHHHH
Confidence 344456899999999999999999999998854 000000
Q ss_pred -------HHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh-------------------------------
Q 047286 540 -------IIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY------------------------------- 581 (632)
Q Consensus 540 -------~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~------------------------------- 581 (632)
.....+.+..+-.+++........+||||||||++||||+..
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~ 187 (240)
T d1ji0a_ 108 NRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ 187 (240)
T ss_dssp TCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHhhChHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHh
Confidence 000011121111233333444556899999999999999654
Q ss_pred -----hccccchhhh-hcCCEEEEEeCCeEeeecChHHHhcc
Q 047286 582 -----CGCGSPPYHY-KNADITSVVKNGVIAEKGRHDALMKI 617 (632)
Q Consensus 582 -----~~iahrl~~~-~~aD~I~vl~~G~ive~G~h~eL~~~ 617 (632)
++++|.+..+ +-||||+||++|+|++.|+++|+.++
T Consensus 188 ~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 229 (240)
T d1ji0a_ 188 EGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp TTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC
Confidence 7889998887 45999999999999999999999974
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=99.82 E-value=8.1e-21 Score=184.54 Aligned_cols=113 Identities=19% Similarity=0.273 Sum_probs=84.7
Q ss_pred eeEEEEEecCCCChHHHHHhhhcCCChhh---------------------------------hcHHHHH-----------
Q 047286 505 EHTVALVGENGNGKSTVISLAERFHNPEQ---------------------------------VIYSWII----------- 540 (632)
Q Consensus 505 ~~~vaIVG~SGsGKSTL~~ll~r~y~~~~---------------------------------~~~~~~~----------- 540 (632)
++++||+||+|||||||+++|.|++.|++ +.....+
T Consensus 28 Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~ 107 (238)
T d1vpla_ 28 GEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSS 107 (238)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccChHHHHhhEeEeeeccccCCCccHHHHHHHHHHhcCCCH
Confidence 45899999999999999999999999853 0000000
Q ss_pred HHHHHHHhcCCC--ccCcccccCCCCCChHHHHHHHHHHHHhh------------------------------------h
Q 047286 541 IKCTNFIASLPQ--GSDLNVGERGLQLSGGLKQRIARTRARNY------------------------------------C 582 (632)
Q Consensus 541 ~~~~~~i~~lp~--g~dt~vge~G~~LSgGQrQRiaiARA~~~------------------------------------~ 582 (632)
....+.+..+.+ |++........+||||||||++||||+.. +
T Consensus 108 ~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii 187 (238)
T d1vpla_ 108 SEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTIL 187 (238)
T ss_dssp HHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEE
Confidence 011222222111 34445555667899999999999999654 7
Q ss_pred ccccchhhhh-cCCEEEEEeCCeEeeecChHHHhcc
Q 047286 583 GCGSPPYHYK-NADITSVVKNGVIAEKGRHDALMKI 617 (632)
Q Consensus 583 ~iahrl~~~~-~aD~I~vl~~G~ive~G~h~eL~~~ 617 (632)
++||.++.+. -||||+||++|+|++.|+++||.++
T Consensus 188 ~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 223 (238)
T d1vpla_ 188 VSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 223 (238)
T ss_dssp EEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred EEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhc
Confidence 7899999987 5999999999999999999999864
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.82 E-value=4.4e-21 Score=188.74 Aligned_cols=114 Identities=22% Similarity=0.209 Sum_probs=84.1
Q ss_pred cEEEeeEEEEEecCCCChHHHHHhhhcCCChhh------------hcHHHH-----------------------------
Q 047286 501 DIVFEHTVALVGENGNGKSTVISLAERFHNPEQ------------VIYSWI----------------------------- 539 (632)
Q Consensus 501 ~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~------------~~~~~~----------------------------- 539 (632)
+|.-++++||+||+|||||||+++|.|+++|++ ......
T Consensus 26 ~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~ 105 (254)
T d1g6ha_ 26 SVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEI 105 (254)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGT
T ss_pred EECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhcCCccCCccccCCCCeeeeeeeehhh
Confidence 555566899999999999999999999998854 000000
Q ss_pred ----------------------HHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHhh----------------
Q 047286 540 ----------------------IIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARNY---------------- 581 (632)
Q Consensus 540 ----------------------~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~~---------------- 581 (632)
...+.+.+..+ |++........+||||||||++||||+..
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~ 183 (254)
T d1g6ha_ 106 CPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL--KLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAP 183 (254)
T ss_dssp STTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHT--TCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCH
T ss_pred hccccchhhhhhhcccccHHHHHHHHHHHHHhc--CcchhccCchhhCCcHHHHHHHHHHHHHhCcCchhhcCCcccCCH
Confidence 00111222211 23333334456799999999999999654
Q ss_pred --------------------hccccchhhh-hcCCEEEEEeCCeEeeecChHHHhc
Q 047286 582 --------------------CGCGSPPYHY-KNADITSVVKNGVIAEKGRHDALMK 616 (632)
Q Consensus 582 --------------------~~iahrl~~~-~~aD~I~vl~~G~ive~G~h~eL~~ 616 (632)
++++|.++.+ +-||||+||++|+|+++|+++|+.+
T Consensus 184 ~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g~~~e~~~ 239 (254)
T d1g6ha_ 184 GLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIK 239 (254)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhCCEEEEEeCCEEEEEecHHHHhh
Confidence 7889999988 4699999999999999999999765
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=99.80 E-value=1.7e-20 Score=181.93 Aligned_cols=120 Identities=22% Similarity=0.267 Sum_probs=90.2
Q ss_pred CcccccEEEeeEEEEEecCCCChHHHHHhhhcCCChhh-----------hcHHHH-------------------------
Q 047286 496 STVRGDIVFEHTVALVGENGNGKSTVISLAERFHNPEQ-----------VIYSWI------------------------- 539 (632)
Q Consensus 496 ~~~~g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~-----------~~~~~~------------------------- 539 (632)
.+++.+|.-++++||+||||||||||+++|.|+++.+. ......
T Consensus 16 ~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 95 (231)
T d1l7vc_ 16 GPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTL 95 (231)
T ss_dssp CSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSCCCSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHHHHHHH
T ss_pred cCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCceEEEECCEECCcCCHHHHHhhceeeeccccCCccccHHHHhhh
Confidence 34555677778999999999999999999999875421 000000
Q ss_pred -------HHHHHHHHhcCCCccCcccccCCCCCChHHHHHHHHHHHHh----------h---------------------
Q 047286 540 -------IIKCTNFIASLPQGSDLNVGERGLQLSGGLKQRIARTRARN----------Y--------------------- 581 (632)
Q Consensus 540 -------~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQRiaiARA~~----------~--------------------- 581 (632)
...+.+.+..+ +++..++....+||||||||++||||++ +
T Consensus 96 ~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~ 173 (231)
T d1l7vc_ 96 HQHDKTRTELLNDVAGAL--ALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDK 173 (231)
T ss_dssp HCSCTTCHHHHHHHHHHT--TCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHhc--CCHhHhCcChhhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHH
Confidence 00122333333 4556666777789999999999999975 2
Q ss_pred ------------hccccchhhh-hcCCEEEEEeCCeEeeecChHHHhcc
Q 047286 582 ------------CGCGSPPYHY-KNADITSVVKNGVIAEKGRHDALMKI 617 (632)
Q Consensus 582 ------------~~iahrl~~~-~~aD~I~vl~~G~ive~G~h~eL~~~ 617 (632)
++++|.+..+ +.||||+||++|+|++.|+++|++..
T Consensus 174 ~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~ 222 (231)
T d1l7vc_ 174 ILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP 222 (231)
T ss_dssp HHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCH
T ss_pred HHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEECCHHHHhCC
Confidence 7889999865 67999999999999999999999974
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.78 E-value=4.6e-20 Score=174.98 Aligned_cols=143 Identities=18% Similarity=0.245 Sum_probs=104.4
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHHhCCCCC----------cHHhhcceEEEcccCccccccccccccccc----C
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVESFRFYA----------PEAEQEKIGLVSKEPIFLFCDFNEGQYIPY----G 151 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~----------~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~----~ 151 (632)
+||+|++||+++|+||||||||||+++|+|+..+. ....+.+++|+||++.++ ..++..+++.+ .
T Consensus 20 is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~~~i~~~~~~~~~~-~~~t~~~~l~~~~~~~ 98 (200)
T d1sgwa_ 20 ITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVP-RKISVEDYLKAVASLY 98 (200)
T ss_dssp EEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCC-TTSBHHHHHHHHHHHT
T ss_pred eEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhHhcCcEEEEeecccCC-CCcCHHHHHHHHHHhc
Confidence 99999999999999999999999999998653321 233577899999998643 33333334332 1
Q ss_pred CCCCCHHHHHHHHHHcc---chhhHhhCCccccccc-----------------ccCCCCHHHHHHHHHHHHHHhCC-ceE
Q 047286 152 KQNASDEHIRPAVQLAN---AEKSIDKLPLGLDTVV-----------------ATNAVDAQSERIVQAAMVKLVTN-QTV 210 (632)
Q Consensus 152 ~~~~~~~~~~~~~~~~~---l~~~i~~l~~g~~~~v-----------------~ts~LD~~~~~~i~~~l~~~~~~-~tv 210 (632)
....+.+++.++++..+ +.+.+.+||+|+++++ +|++||+.+++.+++.|.++.++ .++
T Consensus 99 ~~~~~~~~~~~~l~~~~~~~~~~~~~~LSgG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ 178 (200)
T d1sgwa_ 99 GVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIV 178 (200)
T ss_dssp TCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEE
T ss_pred CCccCHHHHHHHHHHcCCcccccccCcCCCcHHHHHHHHHHHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEE
Confidence 12345677777777755 4567889999998887 39999999999999999988643 344
Q ss_pred EEEecCchHHhhcCeEEEEeC
Q 047286 211 VIVANCLITIRNADCIIMVSK 231 (632)
Q Consensus 211 iiitH~~~~~~~aD~i~vl~~ 231 (632)
|+++|+ .+..||++.+|++
T Consensus 179 ii~~~~--~l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 179 IISSRE--ELSYCDVNENLHK 197 (200)
T ss_dssp EEEESS--CCTTSSEEEEGGG
T ss_pred EEEEec--hhhhcchhhheee
Confidence 444432 2457999998854
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.51 E-value=4.5e-15 Score=140.17 Aligned_cols=34 Identities=26% Similarity=0.386 Sum_probs=29.0
Q ss_pred ccEEEeeEEEEEecCCCChHHHHHhhhcCCChhh
Q 047286 500 GDIVFEHTVALVGENGNGKSTVISLAERFHNPEQ 533 (632)
Q Consensus 500 g~I~f~~~vaIVG~SGsGKSTL~~ll~r~y~~~~ 533 (632)
-+|+-++.+||+||+|||||||+++|+|+++|++
T Consensus 22 ~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~ 55 (200)
T d1sgwa_ 22 MTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLK 55 (200)
T ss_dssp EEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSE
T ss_pred EEEcCCCEEEEECCCCChHHHHHHHHhcccccCC
Confidence 3455556899999999999999999999998843
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.17 E-value=1.2e-09 Score=108.95 Aligned_cols=136 Identities=20% Similarity=0.267 Sum_probs=105.6
Q ss_pred hhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhH------H-------
Q 047286 349 GAVGARLSTDASAVRSVVGDALGLIIQNIATIAAGLVIAFTA-WKLAFITLAVPSLTIAEGYLKKK------K------- 414 (632)
Q Consensus 349 G~l~srls~D~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~l~lv~l~~~~l~~~~~~~~~~------~------- 414 (632)
|++++|+++|++.+...+...+..++..++.+++++++++.. |++++++++..|+.........+ +
T Consensus 113 g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (319)
T d3b60a2 113 GTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMG 192 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccchhhhhhhhhhhHHHHHHhhhccchhhhhhHHHHHHHHHHhhhhHHHHHHHHHHhhhh
Confidence 999999999999999999999999999988888888888777 99988888877776554322111 0
Q ss_pred ---------------------------HHHHH---------------------------HHHHHHHhhhhHHhhcCCcCH
Q 047286 415 ---------------------------NYERL---------------------------HINAFCFFIGSKLVEHGDATF 440 (632)
Q Consensus 415 ---------------------------~~~~~---------------------------~~~~~~~~~g~~~v~~g~~s~ 440 (632)
.+++. ...++++++|+.++..|.+|+
T Consensus 193 ~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~g~it~ 272 (319)
T d3b60a2 193 QVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTA 272 (319)
T ss_dssp HHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHH
T ss_pred hHHHHHHHhhcCCceeeehhccchhhhhhhhhhhhhhHHHHHHHHHHHhcccchhhhhhhhhHHHHHHHHHHHHcCCCCH
Confidence 00000 123456788999999999999
Q ss_pred HHHHHHHHH--HHHHHHHHHHhHHhHHHHHHHHHHHHHHHHccCCC
Q 047286 441 GEVFKFLSE--FGCFWCLESTAVAPNADKAKGSAASIFEILESKPK 484 (632)
Q Consensus 441 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~ 484 (632)
|++++++.. ....++.........++++..+.+|+++++|.|||
T Consensus 273 g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~~~E 318 (319)
T d3b60a2 273 GTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQE 318 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 999988743 33345677778888999999999999999999876
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.06 E-value=2e-09 Score=107.60 Aligned_cols=136 Identities=19% Similarity=0.186 Sum_probs=104.2
Q ss_pred hhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhH------H-------
Q 047286 349 GAVGARLSTDASAVRSVVGDALGLIIQNIATIAAGLVIAFTA-WKLAFITLAVPSLTIAEGYLKKK------K------- 414 (632)
Q Consensus 349 G~l~srls~D~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~l~lv~l~~~~l~~~~~~~~~~------~------- 414 (632)
|++++|+++|++.+++.+...+..++..++.+++++++++.. |+++++.++..|+.+...+...+ +
T Consensus 118 g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (323)
T d2hyda2 118 GQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALA 197 (323)
T ss_dssp HHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhhhhccchhhhhhhcchhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHH
Confidence 999999999999999999998888888888888888888877 99988887777766544322111 0
Q ss_pred ---------------------------HHHHH---------------------------HHHHHHHhhhhHHhhcCCcCH
Q 047286 415 ---------------------------NYERL---------------------------HINAFCFFIGSKLVEHGDATF 440 (632)
Q Consensus 415 ---------------------------~~~~~---------------------------~~~~~~~~~g~~~v~~g~~s~ 440 (632)
.+++. .....++++|++++.+|.+|+
T Consensus 198 ~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~ 277 (323)
T d2hyda2 198 EVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITV 277 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCH
T ss_pred HHHHHHHHHhcCCchhhhHhhhccchhhhhcccccccchhhHHhhhhhhccccccccchhhHHHHHHHHHHHHHcCCCCH
Confidence 00000 123456778999999999999
Q ss_pred HHHHHHHHH--HHHHHHHHHHhHHhHHHHHHHHHHHHHHHHccCCC
Q 047286 441 GEVFKFLSE--FGCFWCLESTAVAPNADKAKGSAASIFEILESKPK 484 (632)
Q Consensus 441 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~ 484 (632)
|++++++.. ....++........+++++..+.+|+++++|++||
T Consensus 278 g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd~e~e 323 (323)
T d2hyda2 278 GTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYD 323 (323)
T ss_dssp HHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 999888743 33335677778888999999999999999998764
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=98.61 E-value=1.1e-09 Score=100.47 Aligned_cols=104 Identities=13% Similarity=-0.027 Sum_probs=65.5
Q ss_pred EEEEEecCCCChHHHHHhhhcCCChhh-------hc--HHHHHH-----HH---HHHHhcCCCccCc-----ccccCCCC
Q 047286 507 TVALVGENGNGKSTVISLAERFHNPEQ-------VI--YSWIII-----KC---TNFIASLPQGSDL-----NVGERGLQ 564 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y~~~~-------~~--~~~~~~-----~~---~~~i~~lp~g~dt-----~vge~G~~ 564 (632)
+++|+||+|||||||++.+.++++++. .. ...... .. ............. .+...-..
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFE 81 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHHHHH
T ss_pred EEEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcchHHHHHhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhcCcchhh
Confidence 589999999999999999999887743 00 000000 00 0000000000000 01111234
Q ss_pred CChHHHHHHHHHHHHhh-----------------------------------hccccchhhhhcCCEEEEEeCCeEeeec
Q 047286 565 LSGGLKQRIARTRARNY-----------------------------------CGCGSPPYHYKNADITSVVKNGVIAEKG 609 (632)
Q Consensus 565 LSgGQrQRiaiARA~~~-----------------------------------~~iahrl~~~~~aD~I~vl~~G~ive~G 609 (632)
+|+|++||.++|+|... +.++|+......+|+|..+++|++++-+
T Consensus 82 ~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~~~~~~il~~~h~~~~~~~~~~i~~~~~~~i~~v~ 161 (178)
T d1ye8a1 82 ELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPGAVLIELT 161 (178)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHHHHTCTTCEEEECC
T ss_pred hhhhhhHHHHHHHHHhcCCCceeecCCCccchhhHHHHHHHHHHhccCCCEEEEEEccHHHHHhhceEEEEeCCEEEEEC
Confidence 78999999999998433 5678887777889999999999999875
Q ss_pred C
Q 047286 610 R 610 (632)
Q Consensus 610 ~ 610 (632)
.
T Consensus 162 ~ 162 (178)
T d1ye8a1 162 P 162 (178)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=98.58 E-value=5.3e-09 Score=95.64 Aligned_cols=44 Identities=11% Similarity=0.032 Sum_probs=33.6
Q ss_pred HHHHHHHHHHh--CCceEEEEecCchHHhhcCeEEEEeCCeEEEec
Q 047286 195 RIVQAAMVKLV--TNQTVVIVANCLITIRNADCIIMVSKGKIVEKG 238 (632)
Q Consensus 195 ~~i~~~l~~~~--~~~tviiitH~~~~~~~aD~i~vl~~G~i~~~g 238 (632)
..+.+.+.+.. .+.++++++|+......+|++..+++|++++-+
T Consensus 116 ~~~~~~l~~~l~~~~~~il~~~h~~~~~~~~~~i~~~~~~~i~~v~ 161 (178)
T d1ye8a1 116 KKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPGAVLIELT 161 (178)
T ss_dssp HHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHHHHTCTTCEEEECC
T ss_pred HHHHHHHHHHhccCCCEEEEEEccHHHHHhhceEEEEeCCEEEEEC
Confidence 34555555543 267999999998777789999999999998764
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.88 E-value=9.2e-06 Score=80.31 Aligned_cols=47 Identities=11% Similarity=0.205 Sum_probs=41.5
Q ss_pred cCCCCHHHHHHHHHHHHHHhCCceEEEEecCchHHhhcCeEEE--EeCC
Q 047286 186 TNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITIRNADCIIM--VSKG 232 (632)
Q Consensus 186 ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~~~aD~i~v--l~~G 232 (632)
.++|+|...+.+.+.|++..++.-+|++||++..+..+|+++. +++|
T Consensus 251 e~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~~~g 299 (308)
T d1e69a_ 251 DSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNG 299 (308)
T ss_dssp CSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSS
T ss_pred cccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHhcccEEEEEEeCC
Confidence 5799999999999999998877889999999999999999865 5555
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.60 E-value=3.7e-05 Score=75.79 Aligned_cols=26 Identities=42% Similarity=0.636 Sum_probs=22.1
Q ss_pred cEEEee-EEEEEecCCCChHHHHHhhh
Q 047286 501 DIVFEH-TVALVGENGNGKSTVISLAE 526 (632)
Q Consensus 501 ~I~f~~-~vaIVG~SGsGKSTL~~ll~ 526 (632)
.|+|+. ...||||+||||||++.+|.
T Consensus 19 ~i~f~~~lnvlvG~NgsGKS~iL~Ai~ 45 (308)
T d1e69a_ 19 LIGFSDRVTAIVGPNGSGKSNIIDAIK 45 (308)
T ss_dssp EEECCSSEEEEECCTTTCSTHHHHHHH
T ss_pred EEeCCCCeEEEECCCCCcHHHHHHHHH
Confidence 477765 88999999999999998663
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.00 E-value=0.00015 Score=65.49 Aligned_cols=22 Identities=45% Similarity=0.652 Sum_probs=20.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHH
Q 047286 93 GTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 93 Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
|.+++|+||||||||||++.|.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~ 23 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLR 23 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 8899999999999999999875
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.99 E-value=0.00061 Score=58.95 Aligned_cols=21 Identities=33% Similarity=0.360 Sum_probs=18.4
Q ss_pred CEEEEEcCCCchHHHHHHHHH
Q 047286 94 TTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 94 e~~~ivG~sGsGKSTLl~ll~ 114 (632)
+++.|.||+||||||+.+.|.
T Consensus 3 klIii~G~pGsGKTTla~~L~ 23 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFI 23 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 478899999999999999664
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=96.77 E-value=0.0023 Score=61.81 Aligned_cols=77 Identities=16% Similarity=0.195 Sum_probs=64.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------------------------------------
Q 047286 2 AACLPAIVIAGGITATVVAKLSCRGQIAYAEAEMLLSTQLEP-------------------------------------- 43 (632)
Q Consensus 2 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-------------------------------------- 43 (632)
++++|+..++...+.++..+..++.++..++.++.+.|.+.|
T Consensus 163 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (319)
T d3b60a2 163 VVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSIS 242 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHhhcCCceeeehhccchhhhhhhhhhhhhhHHHHHHHHHHHhc
Confidence 456788888889999999999999999999999999999943
Q ss_pred ------------------------CCcccHHHH-----------------HHHHHHHHHHHHHHHHHHHHhccCCC
Q 047286 44 ------------------------LEDMPLGQT-----------------SLNVNAFAAGQAAACKMFETIERIPK 78 (632)
Q Consensus 44 ------------------------~~~~~~~~~-----------------~~~~~~~~~~~~a~~ri~~~~~~~~~ 78 (632)
.|.+++|++ ...+..++++.+|++|+++++|.+||
T Consensus 243 ~~~~~~~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~~~E 318 (319)
T d3b60a2 243 DPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQE 318 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred ccchhhhhhhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 344555543 44577899999999999999999886
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.74 E-value=0.0003 Score=63.74 Aligned_cols=21 Identities=19% Similarity=0.341 Sum_probs=18.7
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
.|||.|++|||||||++.|..
T Consensus 24 iIgI~G~~GSGKSTla~~L~~ 44 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQ 44 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 469999999999999998765
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.74 E-value=0.00031 Score=62.33 Aligned_cols=23 Identities=39% Similarity=0.664 Sum_probs=21.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHH
Q 047286 92 SGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 92 ~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
.|+++.|.||+||||||+.+.|.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La 25 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALA 25 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 58899999999999999999996
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.70 E-value=0.00034 Score=61.70 Aligned_cols=37 Identities=24% Similarity=0.333 Sum_probs=25.0
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCCcHHhhcceEEEcccC
Q 047286 95 TVALVGQSGSGKSTVINLVESFRFYAPEAEQEKIGLVSKEP 135 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~~~~~~~~~~r~~i~~v~Q~~ 135 (632)
+++|+|++|||||||++-|.. .. .....+++++-.++
T Consensus 4 vi~itG~~GSGKTTL~~~L~~--~l--~~~g~~v~v~~~d~ 40 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIP--AL--CARGIRPGLIKHTH 40 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHH--HH--HHTTCCEEEEEECC
T ss_pred EEEEEcCCCCCHHHHHHHHHH--HH--HHCCCeEEEecccc
Confidence 689999999999999997751 10 01123466666554
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.66 E-value=0.00035 Score=61.64 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=19.1
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
+++|+|++|||||||++-|.+.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~ 25 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPA 25 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5799999999999999877643
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.61 E-value=0.00037 Score=62.83 Aligned_cols=23 Identities=35% Similarity=0.408 Sum_probs=19.6
Q ss_pred eEEEEEecCCCChHHHHHhhhcC
Q 047286 506 HTVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
..+.|+||||||||||++.|..-
T Consensus 3 ~iivl~GpsG~GK~tl~~~L~~~ 25 (182)
T d1znwa1 3 RVVVLSGPSAVGKSTVVRCLRER 25 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhh
Confidence 35789999999999999987654
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.61 E-value=0.00042 Score=61.45 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=20.3
Q ss_pred EEEEEecCCCChHHHHHhhhcCC
Q 047286 507 TVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
.|.|+||+||||||+++.|.+-+
T Consensus 6 iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 6 ILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp EEEEEECTTSCHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999999999997654
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.61 E-value=0.00026 Score=63.35 Aligned_cols=24 Identities=29% Similarity=0.493 Sum_probs=21.0
Q ss_pred eEEEEEecCCCChHHHHHhhhcCC
Q 047286 506 HTVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
..|+|+|++|||||||++.|..-|
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999987644
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.60 E-value=0.00055 Score=63.52 Aligned_cols=24 Identities=33% Similarity=0.648 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHh
Q 047286 92 SGTTVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 92 ~Ge~~~ivG~sGsGKSTLl~ll~~ 115 (632)
+|++++++|+||+|||||+|.|.+
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~ 117 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINP 117 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHST
T ss_pred cCCeEEEECCCCCCHHHHHHhhcc
Confidence 699999999999999999999853
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.60 E-value=0.0004 Score=61.27 Aligned_cols=25 Identities=24% Similarity=0.236 Sum_probs=21.6
Q ss_pred eEEEEEecCCCChHHHHHhhhcCCC
Q 047286 506 HTVALVGENGNGKSTVISLAERFHN 530 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r~y~ 530 (632)
..+.|+||+||||||+++.|.+-+.
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999987553
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=96.57 E-value=0.0029 Score=61.24 Aligned_cols=77 Identities=14% Similarity=0.163 Sum_probs=64.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------------------------------------
Q 047286 2 AACLPAIVIAGGITATVVAKLSCRGQIAYAEAEMLLSTQLEP-------------------------------------- 43 (632)
Q Consensus 2 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-------------------------------------- 43 (632)
++.+|+..++...+.++.++..++.++..++.++.+.|.+.|
T Consensus 168 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 247 (323)
T d2hyda2 168 LFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYS 247 (323)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCCchhhhHhhhccchhhhhcccccccchhhHHhhhhhhc
Confidence 467888889999999999999999999999999999999943
Q ss_pred ------------------------CCcccHHH-----------------HHHHHHHHHHHHHHHHHHHHHhccCCC
Q 047286 44 ------------------------LEDMPLGQ-----------------TSLNVNAFAAGQAAACKMFETIERIPK 78 (632)
Q Consensus 44 ------------------------~~~~~~~~-----------------~~~~~~~~~~~~~a~~ri~~~~~~~~~ 78 (632)
.|.+++|+ +...+..++++.+|++|+++++|++||
T Consensus 248 ~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd~e~e 323 (323)
T d2hyda2 248 FAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYD 323 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCS
T ss_pred cccccccchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 34455554 345678899999999999999998875
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.57 E-value=0.00047 Score=60.90 Aligned_cols=24 Identities=42% Similarity=0.480 Sum_probs=21.8
Q ss_pred eCCCEEEEEcCCCchHHHHHHHHH
Q 047286 91 PSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 91 ~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
+++.++.|.||+||||||+.+.|.
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La 27 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVA 27 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 467899999999999999999986
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.56 E-value=0.0005 Score=61.03 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=22.0
Q ss_pred eCCCEEEEEcCCCchHHHHHHHHH
Q 047286 91 PSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 91 ~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
++|-++.|+|++||||||+.+.|.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La 27 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQ 27 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 468899999999999999999986
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.54 E-value=6.5e-05 Score=68.57 Aligned_cols=28 Identities=25% Similarity=0.260 Sum_probs=22.6
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHH
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
.++++.+| +++|+|||||||||++.+|.
T Consensus 18 ~~i~f~~~-~tvi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 18 RTFDLDEL-VTTLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp EEECHHHH-HHHHHSCCSHHHHHHHHHHH
T ss_pred EEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 34455554 89999999999999999885
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.53 E-value=0.00046 Score=59.78 Aligned_cols=22 Identities=27% Similarity=0.250 Sum_probs=18.6
Q ss_pred eEEEEEecCCCChHHHHHhhhc
Q 047286 506 HTVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r 527 (632)
..|.|+|++||||||+++.|.+
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999996643
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.52 E-value=0.00059 Score=62.83 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=21.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHH
Q 047286 92 SGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 92 ~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
.|.++.|+||||||||||++.|.
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~ 23 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALL 23 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999998775
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.47 E-value=0.00055 Score=60.75 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=18.7
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
+|.|+|++||||||+.+.|.+
T Consensus 8 ~I~l~G~~GsGKTTia~~La~ 28 (183)
T d1m8pa3 8 TIFLTGYMNSGKDAIARALQV 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999998874
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=96.41 E-value=0.00061 Score=59.35 Aligned_cols=22 Identities=36% Similarity=0.424 Sum_probs=19.3
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
.|.|+||+||||||+.++|..-
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~ 25 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQ 25 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998754
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.40 E-value=0.0007 Score=61.51 Aligned_cols=22 Identities=32% Similarity=0.383 Sum_probs=20.2
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
+|+|||++|+|||||++.|.+.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHhcCC
Confidence 5899999999999999999864
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.39 E-value=0.00065 Score=60.09 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=21.1
Q ss_pred EEEEEecCCCChHHHHHhhhcCCC
Q 047286 507 TVALVGENGNGKSTVISLAERFHN 530 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y~ 530 (632)
.|.|.|++||||||+++.|.+.+.
T Consensus 5 iI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 5 MIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 578999999999999999988654
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.39 E-value=0.00079 Score=59.49 Aligned_cols=24 Identities=25% Similarity=0.756 Sum_probs=21.8
Q ss_pred eCCCEEEEEcCCCchHHHHHHHHH
Q 047286 91 PSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 91 ~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
|+|-.++|.||+||||||+.+.|.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La 26 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIA 26 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHH
Confidence 567789999999999999999996
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.38 E-value=0.00057 Score=60.30 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=19.6
Q ss_pred EEEEEecCCCChHHHHHhhhcCC
Q 047286 507 TVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
+|.|+|++||||||+++.|..-|
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36799999999999999996543
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.36 E-value=0.00077 Score=60.37 Aligned_cols=21 Identities=33% Similarity=0.428 Sum_probs=19.6
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
+|+|||++|+|||||++.|.+
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~ 22 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTG 22 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999976
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.35 E-value=0.00092 Score=59.03 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=20.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHH
Q 047286 93 GTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 93 Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
.+++.|.|++||||||+.+.|.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~ 24 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQ 24 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999986
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.33 E-value=0.0008 Score=59.91 Aligned_cols=21 Identities=43% Similarity=0.664 Sum_probs=19.4
Q ss_pred CEEEEEcCCCchHHHHHHHHH
Q 047286 94 TTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 94 e~~~ivG~sGsGKSTLl~ll~ 114 (632)
..++|.||+|||||||++.|.
T Consensus 8 K~I~i~G~~GsGKTTla~~La 28 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLA 28 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999996
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.28 E-value=0.00083 Score=61.96 Aligned_cols=21 Identities=24% Similarity=0.389 Sum_probs=18.2
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
.|||.|++||||||+++.|..
T Consensus 4 iIgI~G~~gSGKSTla~~L~~ 24 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQ 24 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999986643
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.26 E-value=0.00087 Score=60.50 Aligned_cols=20 Identities=35% Similarity=0.494 Sum_probs=18.5
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 047286 95 TVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~ 114 (632)
++||.||+|||||||.+.|.
T Consensus 24 iIgI~G~~GSGKSTla~~L~ 43 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLS 43 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999885
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.25 E-value=0.0011 Score=67.55 Aligned_cols=29 Identities=21% Similarity=0.394 Sum_probs=24.6
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHH
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
..+++.++.+++|+|||||||||++.+|.
T Consensus 18 ~~i~f~~~~l~~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 18 TKVGFGESNFTSIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp EEEECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred EEEeCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 45566667799999999999999999884
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.24 E-value=0.001 Score=58.68 Aligned_cols=39 Identities=23% Similarity=0.221 Sum_probs=25.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCCcHHhhcceEEEcccCc
Q 047286 94 TTVALVGQSGSGKSTVINLVESFRFYAPEAEQEKIGLVSKEPI 136 (632)
Q Consensus 94 e~~~ivG~sGsGKSTLl~ll~~~~~~~~~~~r~~i~~v~Q~~~ 136 (632)
.+++|+|++|||||||++-|. .... ....+++.+-.+..
T Consensus 2 kii~I~G~~gSGKTTli~~l~--~~L~--~~g~~v~vik~d~~ 40 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWV--AAAV--REGWRVGTVKHHGH 40 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHH--HHHH--HTTCCEEEEECCC-
T ss_pred cEEEEEeCCCCCHHHHHHHHH--HHHH--hCCCeEEEEEeccC
Confidence 478999999999999998553 1100 11135777766553
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.23 E-value=0.0026 Score=56.54 Aligned_cols=67 Identities=24% Similarity=0.226 Sum_probs=41.6
Q ss_pred EEEEEecCCCChHHHHHhhhcCCChhhhcH------HHHHHHHHHHHhcCCCccCcccccCCCCCChHHHHH-HHHHHH
Q 047286 507 TVALVGENGNGKSTVISLAERFHNPEQVIY------SWIIIKCTNFIASLPQGSDLNVGERGLQLSGGLKQR-IARTRA 578 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y~~~~~~~------~~~~~~~~~~i~~lp~g~dt~vge~G~~LSgGQrQR-iaiARA 578 (632)
.|-+||++||||||+++-+..-.+..-++. ......+.+ .|..|.+..+. ..+++-.||++ +.+||.
T Consensus 16 liil~G~pGsGKST~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~---~l~~g~~vIiD--~t~~~~~~R~~~~~~a~~ 89 (172)
T d1yj5a2 16 VVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGSWQRCVSSCQA---ALRQGKRVVID--NTNPDVPSRARYIQCAKD 89 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHTGGGTCEEEEHHHHCSHHHHHHHHHH---HHHTTCCEEEE--SCCCSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEEchHHHHHHHHHHHHHHH---HHHCCCCceee--CcCCCHHHHHHHHHHHHh
Confidence 458999999999999987754332211111 111112223 34457665554 67889999887 778875
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.22 E-value=0.00092 Score=58.91 Aligned_cols=22 Identities=36% Similarity=0.453 Sum_probs=19.2
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
.+.|+|++||||||+++.|.+-
T Consensus 8 iivl~G~~GsGKsT~a~~La~~ 29 (171)
T d1knqa_ 8 IYVLMGVSGSGKSAVASEVAHQ 29 (171)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4589999999999999988763
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.20 E-value=0.00081 Score=60.67 Aligned_cols=23 Identities=52% Similarity=0.645 Sum_probs=21.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHH
Q 047286 92 SGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 92 ~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
+|-++.|+|++||||||+.+.|.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La 40 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALE 40 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 57899999999999999999986
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=96.14 E-value=0.0011 Score=57.48 Aligned_cols=20 Identities=40% Similarity=0.584 Sum_probs=18.2
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 047286 95 TVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~ 114 (632)
.+.|+||+||||||+.+.|.
T Consensus 4 ~I~l~G~~GsGKSTvak~La 23 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLA 23 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 47888999999999999996
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.12 E-value=0.00092 Score=60.05 Aligned_cols=21 Identities=43% Similarity=0.512 Sum_probs=19.4
Q ss_pred EEEEecCCCChHHHHHhhhcC
Q 047286 508 VALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 508 vaIVG~SGsGKSTL~~ll~r~ 528 (632)
|||||++++|||||++.|.+-
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999763
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.11 E-value=0.0011 Score=59.91 Aligned_cols=20 Identities=30% Similarity=0.509 Sum_probs=17.6
Q ss_pred EEEEecCCCChHHHHHhhhc
Q 047286 508 VALVGENGNGKSTVISLAER 527 (632)
Q Consensus 508 vaIVG~SGsGKSTL~~ll~r 527 (632)
|.|+|||||||+||++.|..
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~ 23 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999997743
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.11 E-value=0.0011 Score=58.33 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=19.1
Q ss_pred EEEEEecCCCChHHHHHhhhcCC
Q 047286 507 TVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
.++|+|++|||||||+.-|.+.+
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L 25 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAA 25 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 57999999999999998665543
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.11 E-value=0.001 Score=59.71 Aligned_cols=21 Identities=24% Similarity=0.441 Sum_probs=18.4
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
.+.||||||+||+||++.|.+
T Consensus 5 ~ivl~Gpsg~GK~tl~~~L~~ 25 (178)
T d1kgda_ 5 TLVLLGAHGVGRRHIKNTLIT 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999997663
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.10 E-value=0.0013 Score=58.49 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=20.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHH
Q 047286 93 GTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 93 Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
+.+++|.|++||||||+++.|.
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~ 22 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAM 22 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999999885
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.08 E-value=0.0012 Score=57.99 Aligned_cols=19 Identities=32% Similarity=0.517 Sum_probs=17.6
Q ss_pred EEEEcCCCchHHHHHHHHH
Q 047286 96 VALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 96 ~~ivG~sGsGKSTLl~ll~ 114 (632)
++|+||+||||||+.+.|.
T Consensus 7 I~i~G~pGsGKTTia~~La 25 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELA 25 (173)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6799999999999999995
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.08 E-value=0.00079 Score=62.63 Aligned_cols=23 Identities=39% Similarity=0.670 Sum_probs=21.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHH
Q 047286 92 SGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 92 ~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
+|+.++++|+||+|||||+|.|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~ 118 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAIS 118 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHC
T ss_pred ccceEEEECCCCccHHHHHHhhc
Confidence 68899999999999999999985
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.06 E-value=0.0013 Score=59.52 Aligned_cols=24 Identities=29% Similarity=0.322 Sum_probs=20.7
Q ss_pred EEEEEecCCCChHHHHHhhhcCCC
Q 047286 507 TVALVGENGNGKSTVISLAERFHN 530 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y~ 530 (632)
.|.|+||+||||||+++.|..-|.
T Consensus 8 iI~i~G~pGSGKsT~a~~La~~~g 31 (194)
T d1qf9a_ 8 VVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 579999999999999999986543
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.06 E-value=0.0013 Score=58.21 Aligned_cols=22 Identities=36% Similarity=0.419 Sum_probs=19.7
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
+|+|+|++|+|||||++.|.+-
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~ 23 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKK 23 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999998864
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.04 E-value=0.0012 Score=58.16 Aligned_cols=24 Identities=17% Similarity=0.411 Sum_probs=20.6
Q ss_pred EEEEEecCCCChHHHHHhhhcCCC
Q 047286 507 TVALVGENGNGKSTVISLAERFHN 530 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y~ 530 (632)
.|.|.||+||||||+++.|..-+.
T Consensus 7 ~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 7 NILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHST
T ss_pred EEEEEeCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999976544
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.04 E-value=0.0014 Score=57.61 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=19.2
Q ss_pred CEEEEEcCCCchHHHHHHHHH
Q 047286 94 TTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 94 e~~~ivG~sGsGKSTLl~ll~ 114 (632)
.++.|.||+||||||+.+.|.
T Consensus 3 klI~i~G~~GsGKTTva~~L~ 23 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLA 23 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 478999999999999999886
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.02 E-value=0.0013 Score=60.83 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=20.2
Q ss_pred eEEEEEecCCCChHHHHHhhhcC
Q 047286 506 HTVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
.+++++|+||.|||||++.|.+-
T Consensus 96 kt~~~~G~SGVGKSTLiN~L~~~ 118 (225)
T d1u0la2 96 KISTMAGLSGVGKSSLLNAINPG 118 (225)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTT
T ss_pred CeEEEECCCCCCHHHHHHhhcch
Confidence 46799999999999999998753
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.00 E-value=0.0007 Score=61.10 Aligned_cols=22 Identities=45% Similarity=0.576 Sum_probs=19.5
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
+|-|+|++||||||+++.|.+.
T Consensus 21 vI~L~G~pGSGKTTiAk~La~~ 42 (195)
T d1x6va3 21 TVWLTGLSGAGKTTVSMALEEY 42 (195)
T ss_dssp EEEEESSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5679999999999999999863
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.99 E-value=0.0015 Score=56.89 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=19.8
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
+|+|||++|+|||||++.|.+-
T Consensus 3 kI~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 3 KVVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999988753
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.95 E-value=0.0014 Score=58.17 Aligned_cols=20 Identities=40% Similarity=0.604 Sum_probs=18.0
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 047286 95 TVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~ 114 (632)
.+.|.||+|+|||||++.+.
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~ 22 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKAS 22 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 58899999999999999775
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.93 E-value=0.0014 Score=59.27 Aligned_cols=20 Identities=40% Similarity=0.556 Sum_probs=17.6
Q ss_pred EEEEecCCCChHHHHHhhhc
Q 047286 508 VALVGENGNGKSTVISLAER 527 (632)
Q Consensus 508 vaIVG~SGsGKSTL~~ll~r 527 (632)
|.|+|||||||+||++.|..
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~ 22 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQ 22 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67999999999999997754
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.93 E-value=0.0016 Score=58.39 Aligned_cols=22 Identities=36% Similarity=0.407 Sum_probs=19.6
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
+|||+|++|+|||||++.|.+-
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4899999999999999988763
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.93 E-value=0.0016 Score=58.01 Aligned_cols=23 Identities=30% Similarity=0.302 Sum_probs=20.0
Q ss_pred EEEEEecCCCChHHHHHhhhcCC
Q 047286 507 TVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
.|+|.|++||||||+++.|...+
T Consensus 3 iI~i~G~~GsGKsT~~~~L~~~l 25 (190)
T d1khta_ 3 VVVVTGVPGVGSTTSSQLAMDNL 25 (190)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999886543
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.93 E-value=0.0016 Score=58.04 Aligned_cols=22 Identities=36% Similarity=0.410 Sum_probs=20.2
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
+|+|||++|+|||||++.|.+-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999988864
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.91 E-value=0.0016 Score=57.79 Aligned_cols=21 Identities=33% Similarity=0.425 Sum_probs=19.6
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
+|+|+|.+|+|||||++.|.|
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~ 27 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLG 27 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999986
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.91 E-value=0.0012 Score=59.09 Aligned_cols=21 Identities=38% Similarity=0.540 Sum_probs=19.4
Q ss_pred EEEEecCCCChHHHHHhhhcC
Q 047286 508 VALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 508 vaIVG~SGsGKSTL~~ll~r~ 528 (632)
|||||++++|||||++.|.+-
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999864
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.89 E-value=0.0021 Score=57.60 Aligned_cols=21 Identities=29% Similarity=0.532 Sum_probs=18.9
Q ss_pred CEEEEEcCCCchHHHHHHHHH
Q 047286 94 TTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 94 e~~~ivG~sGsGKSTLl~ll~ 114 (632)
..+.|+||||||||||++.|.
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~ 24 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLI 24 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHH
Confidence 578999999999999999764
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=95.87 E-value=0.0015 Score=58.30 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=20.1
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
+|+|||++++|||||++.|.+-
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~ 39 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQ 39 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999874
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=95.87 E-value=0.0018 Score=58.49 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=20.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHH
Q 047286 93 GTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 93 Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
..+++|+||.||||||+.+.|+
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La 27 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIV 27 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3589999999999999999986
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.87 E-value=0.0015 Score=59.18 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=22.1
Q ss_pred EEEEEecCCCChHHHHHhhhcCCCh
Q 047286 507 TVALVGENGNGKSTVISLAERFHNP 531 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y~~ 531 (632)
++.|+||+||||||++++|..-|.-
T Consensus 10 iI~i~GppGSGKsT~a~~La~~~g~ 34 (196)
T d1ukza_ 10 VIFVLGGPGAGKGTQCEKLVKDYSF 34 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5799999999999999999987754
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.86 E-value=0.0016 Score=59.79 Aligned_cols=21 Identities=24% Similarity=0.347 Sum_probs=18.2
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
.+.|+||||||||||++.|..
T Consensus 4 livi~GPSG~GK~tl~~~L~~ 24 (205)
T d1s96a_ 4 LYIVSAPSGAGKSSLIQALLK 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 468999999999999987754
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=95.83 E-value=0.011 Score=54.62 Aligned_cols=27 Identities=22% Similarity=0.209 Sum_probs=21.7
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHH
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLV 113 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll 113 (632)
-++.+. ++++.|.|||.|||||++|.+
T Consensus 29 Ndi~~~-~~~~iiTGpN~~GKSt~lk~i 55 (224)
T d1ewqa2 29 NDLEMA-HELVLITGPNMAGKSTFLRQT 55 (224)
T ss_dssp EEEEES-SCEEEEESCSSSSHHHHHHHH
T ss_pred ceEEeC-CcEEEEECCCccccchhhhhh
Confidence 344554 368999999999999999966
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.80 E-value=0.0019 Score=58.27 Aligned_cols=19 Identities=37% Similarity=0.656 Sum_probs=17.4
Q ss_pred EEEEcCCCchHHHHHHHHH
Q 047286 96 VALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 96 ~~ivG~sGsGKSTLl~ll~ 114 (632)
++|+||||||||||++.|.
T Consensus 4 Ivl~GpsG~GK~tl~~~L~ 22 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLF 22 (186)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999999774
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=95.80 E-value=0.0024 Score=57.48 Aligned_cols=24 Identities=33% Similarity=0.609 Sum_probs=21.9
Q ss_pred eCCCEEEEEcCCCchHHHHHHHHH
Q 047286 91 PSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 91 ~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
|+|=.+.|+||.||||||+.+.|+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La 24 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLA 24 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHH
Confidence 577888999999999999999996
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.77 E-value=0.0019 Score=58.94 Aligned_cols=22 Identities=23% Similarity=0.440 Sum_probs=19.7
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
.|.+||++||||||+++.|.+.
T Consensus 4 li~l~GlpgsGKSTla~~L~~~ 25 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRY 25 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998864
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.75 E-value=0.0021 Score=61.19 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=20.0
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
.|+|+|+||+||||++|.|.|-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~ 55 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGE 55 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4799999999999999999874
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=95.74 E-value=0.0021 Score=63.21 Aligned_cols=26 Identities=35% Similarity=0.502 Sum_probs=23.0
Q ss_pred EEEEecCCCChHHHHHhhhcCCChhh
Q 047286 508 VALVGENGNGKSTVISLAERFHNPEQ 533 (632)
Q Consensus 508 vaIVG~SGsGKSTL~~ll~r~y~~~~ 533 (632)
+.|+|+|||||||+++.|.++.+++.
T Consensus 169 ili~G~tgSGKTT~l~al~~~i~~~~ 194 (323)
T d1g6oa_ 169 VIVCGGTGSGKTTYIKSIMEFIPKEE 194 (323)
T ss_dssp EEEEESTTSSHHHHHHHHGGGSCTTC
T ss_pred EEEEeeccccchHHHHHHhhhccccc
Confidence 47899999999999999999987743
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.71 E-value=0.0022 Score=56.88 Aligned_cols=22 Identities=18% Similarity=0.427 Sum_probs=19.5
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
+|+|||++|+|||||++.|.+=
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~ 36 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDD 36 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999988753
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=95.70 E-value=0.0023 Score=57.73 Aligned_cols=22 Identities=36% Similarity=0.649 Sum_probs=19.9
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
.|||.|++||||||+++.|..+
T Consensus 5 IIgitG~~gSGKstva~~l~~~ 26 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRSW 26 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 5799999999999999998764
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=95.67 E-value=0.0021 Score=58.14 Aligned_cols=22 Identities=41% Similarity=0.536 Sum_probs=19.9
Q ss_pred EEEEEcCCCchHHHHHHHHHhC
Q 047286 95 TVALVGQSGSGKSTVINLVESF 116 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~~ 116 (632)
.++|+|++|+|||||++.|.+.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHhcCC
Confidence 4999999999999999999753
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.62 E-value=0.0025 Score=58.55 Aligned_cols=42 Identities=19% Similarity=0.330 Sum_probs=26.7
Q ss_pred EEEEEcCCCchHHHHHHHHHh-CCCCCcHHhhcceEEEcccCc
Q 047286 95 TVALVGQSGSGKSTVINLVES-FRFYAPEAEQEKIGLVSKEPI 136 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~-~~~~~~~~~r~~i~~v~Q~~~ 136 (632)
++||.|++||||||+.+.|.. +...........+.+++++.+
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~~~~~~~~~~~vi~~D~y 46 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSF 46 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhchhccccCCCceEEEecccc
Confidence 689999999999999997742 111111112234667777653
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.62 E-value=0.0024 Score=57.72 Aligned_cols=19 Identities=47% Similarity=0.676 Sum_probs=17.3
Q ss_pred EEEEcCCCchHHHHHHHHH
Q 047286 96 VALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 96 ~~ivG~sGsGKSTLl~ll~ 114 (632)
++|+||||||||||++.|.
T Consensus 3 Ivl~GPsGsGK~tl~~~L~ 21 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLF 21 (190)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6799999999999999874
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.60 E-value=0.0024 Score=57.76 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=22.7
Q ss_pred eeCCCEEEEEcCCCchHHHHHHHHH
Q 047286 90 VPSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 90 i~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
++++.++.|+||.||||||+.+.|+
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La 29 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIV 29 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHH
Confidence 4577899999999999999999996
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=95.59 E-value=0.0025 Score=55.46 Aligned_cols=21 Identities=24% Similarity=0.520 Sum_probs=18.5
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
+|+|||++|+|||||++.+.+
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~ 27 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQV 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999997654
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=95.58 E-value=0.0026 Score=54.98 Aligned_cols=20 Identities=25% Similarity=0.498 Sum_probs=18.0
Q ss_pred EEEEEecCCCChHHHHHhhh
Q 047286 507 TVALVGENGNGKSTVISLAE 526 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~ 526 (632)
+|.|||++|||||||++-+.
T Consensus 2 kivlvG~~~vGKSsLi~~l~ 21 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLK 21 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57899999999999999765
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.58 E-value=0.0026 Score=57.40 Aligned_cols=23 Identities=26% Similarity=0.250 Sum_probs=20.0
Q ss_pred EEEEEecCCCChHHHHHhhhcCC
Q 047286 507 TVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
+|.|+||.||||||+++.|..-|
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999887644
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=95.57 E-value=0.0025 Score=55.89 Aligned_cols=20 Identities=30% Similarity=0.532 Sum_probs=18.0
Q ss_pred EEEEecCCCChHHHHHhhhc
Q 047286 508 VALVGENGNGKSTVISLAER 527 (632)
Q Consensus 508 vaIVG~SGsGKSTL~~ll~r 527 (632)
+.|+|++||||||+.++|..
T Consensus 3 I~liG~~GsGKsTi~k~La~ 22 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAK 22 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999998864
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.57 E-value=0.0025 Score=58.02 Aligned_cols=21 Identities=19% Similarity=0.575 Sum_probs=19.3
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
+|+|||++|+|||||++.|.+
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~ 25 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTT 25 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999998874
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.54 E-value=0.0024 Score=56.52 Aligned_cols=23 Identities=39% Similarity=0.478 Sum_probs=19.8
Q ss_pred EEEEEecCCCChHHHHHhhhcCC
Q 047286 507 TVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
.|.|+||+|+|||||++.+.+.+
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l 25 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 37899999999999999887654
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.53 E-value=0.003 Score=57.15 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=20.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHH
Q 047286 92 SGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 92 ~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
+-.++.|+||.||||||+.+.|+
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La 29 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLV 29 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34579999999999999999997
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=95.51 E-value=0.003 Score=57.11 Aligned_cols=23 Identities=35% Similarity=0.609 Sum_probs=20.7
Q ss_pred EEEEEecCCCChHHHHHhhhcCC
Q 047286 507 TVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
.|+|-|+.||||||++++|.+..
T Consensus 11 ~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 11 TVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEECSTTSCHHHHHHTTGGGT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57999999999999999998754
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.47 E-value=0.0029 Score=56.91 Aligned_cols=22 Identities=27% Similarity=0.314 Sum_probs=19.5
Q ss_pred EEEEecCCCChHHHHHhhhcCC
Q 047286 508 VALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 508 vaIVG~SGsGKSTL~~ll~r~y 529 (632)
+.|.||+||||||++++|..-|
T Consensus 6 I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 6 VMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999997654
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.46 E-value=0.0031 Score=56.12 Aligned_cols=23 Identities=26% Similarity=0.260 Sum_probs=19.9
Q ss_pred EEEEecCCCChHHHHHhhhcCCC
Q 047286 508 VALVGENGNGKSTVISLAERFHN 530 (632)
Q Consensus 508 vaIVG~SGsGKSTL~~ll~r~y~ 530 (632)
|.|+||.||||||++++|..-|.
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~~ 25 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAYG 25 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
Confidence 67999999999999999975543
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=95.46 E-value=0.0031 Score=56.36 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=20.6
Q ss_pred EEEEEecCCCChHHHHHhhhcCCC
Q 047286 507 TVALVGENGNGKSTVISLAERFHN 530 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y~ 530 (632)
.|.|+||.||||||++++|..-|.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~g 25 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKYG 25 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 478999999999999998886554
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=95.42 E-value=0.0032 Score=58.75 Aligned_cols=37 Identities=30% Similarity=0.492 Sum_probs=27.1
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCCcHHhhcceEEEcccCc
Q 047286 95 TVALVGQSGSGKSTVINLVESFRFYAPEAEQEKIGLVSKEPI 136 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~~~~~~~~~~r~~i~~v~Q~~~ 136 (632)
+++|+|+.|||||||++.|. ... ...+.++.|..+|.
T Consensus 2 vi~v~G~~GsGKTTLl~~ll--~~~---~~~~~~~ivn~d~~ 38 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFG--RYL---EDNYKVAYVNLDTG 38 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHH--HHH---TTTSCEEEEECCSS
T ss_pred EEEEEcCCCCcHHHHHHHHH--HHH---hhCCeEEEEecCcc
Confidence 58999999999999999775 211 12345788877764
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.40 E-value=0.0032 Score=58.00 Aligned_cols=27 Identities=26% Similarity=0.305 Sum_probs=22.3
Q ss_pred EEEEEecCCCChHHHHHhhhcCCChhh
Q 047286 507 TVALVGENGNGKSTVISLAERFHNPEQ 533 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y~~~~ 533 (632)
.|+|-||+||||||++++|..-|.-..
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg~~~ 31 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFGFTY 31 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcE
Confidence 478999999999999999987655433
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=95.39 E-value=0.0031 Score=55.73 Aligned_cols=21 Identities=33% Similarity=0.436 Sum_probs=18.5
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
.+.++|++||||||+.++|..
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~ 24 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELAR 24 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999864
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.37 E-value=0.0034 Score=54.22 Aligned_cols=21 Identities=19% Similarity=0.507 Sum_probs=19.0
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
+++|||++|+|||||++.|.+
T Consensus 2 KI~liG~~nvGKSSLln~l~~ 22 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKN 22 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999997765
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.34 E-value=0.0016 Score=60.49 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=19.6
Q ss_pred eEEEEEecCCCChHHHHHhhhcC
Q 047286 506 HTVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
+++.++|+||.|||||++.|.+-
T Consensus 98 ~~~vl~G~SGVGKSSLiN~L~~~ 120 (231)
T d1t9ha2 98 KTTVFAGQSGVGKSSLLNAISPE 120 (231)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-
T ss_pred ceEEEECCCCccHHHHHHhhccH
Confidence 35689999999999999998863
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=95.34 E-value=0.0034 Score=55.43 Aligned_cols=20 Identities=30% Similarity=0.458 Sum_probs=18.0
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 047286 95 TVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~ 114 (632)
.+.|+|++||||||+.+.|.
T Consensus 4 ~Iil~G~~GsGKSTia~~LA 23 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELA 23 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999995
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=95.33 E-value=0.011 Score=56.15 Aligned_cols=24 Identities=38% Similarity=0.479 Sum_probs=21.1
Q ss_pred eeCCCEEEEEcCCCchHHHHHHHH
Q 047286 90 VPSGTTVALVGQSGSGKSTVINLV 113 (632)
Q Consensus 90 i~~Ge~~~ivG~sGsGKSTLl~ll 113 (632)
+.+|+++.|.|++|+|||||+--+
T Consensus 26 ~~pg~~~~i~G~~G~GKS~l~l~l 49 (274)
T d1nlfa_ 26 MVAGTVGALVSPGGAGKSMLALQL 49 (274)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHH
T ss_pred ccCCcEEEEEeCCCCCHHHHHHHH
Confidence 456999999999999999998654
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=95.31 E-value=0.0038 Score=54.65 Aligned_cols=19 Identities=37% Similarity=0.634 Sum_probs=17.7
Q ss_pred EEEEcCCCchHHHHHHHHH
Q 047286 96 VALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 96 ~~ivG~sGsGKSTLl~ll~ 114 (632)
+.|+|++||||||+.+.|.
T Consensus 3 I~liG~~GsGKsTi~k~La 21 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALA 21 (161)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6789999999999999996
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.31 E-value=0.0013 Score=57.37 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=19.4
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
+|+++|++|+|||||++.|.+
T Consensus 2 kI~liG~~n~GKSSLin~l~g 22 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLN 22 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999875
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=95.30 E-value=0.0037 Score=57.12 Aligned_cols=40 Identities=30% Similarity=0.550 Sum_probs=26.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCCcHHhhcceEEEcccC
Q 047286 92 SGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQEKIGLVSKEP 135 (632)
Q Consensus 92 ~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~~r~~i~~v~Q~~ 135 (632)
++.+++++||+|+||||.+-=|. ..+ ....++++++.=|.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA--~~~--~~~g~kV~lit~Dt 44 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLG--RYY--QNLGKKVMFCAGDT 44 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHH--HHH--HTTTCCEEEECCCC
T ss_pred CCEEEEEECCCCCCHHHHHHHHH--HHH--HHCCCcEEEEEecc
Confidence 57899999999999999875333 111 11134677776664
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.29 E-value=0.0051 Score=55.87 Aligned_cols=25 Identities=16% Similarity=0.474 Sum_probs=22.6
Q ss_pred eeCCCEEEEEcCCCchHHHHHHHHH
Q 047286 90 VPSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 90 i~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
+++|+++.|.||+|||||||+.-++
T Consensus 20 i~~G~v~~i~G~~GsGKT~l~l~la 44 (242)
T d1n0wa_ 20 IETGSITEMFGEFRTGKTQICHTLA 44 (242)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHH
T ss_pred CcCCEEEEEEeCCCCCHHHHHHHHH
Confidence 7899999999999999999987553
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=95.29 E-value=0.0039 Score=57.01 Aligned_cols=21 Identities=38% Similarity=0.574 Sum_probs=19.1
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
.|||.|.+||||||+++.+..
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998874
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.27 E-value=0.0036 Score=54.94 Aligned_cols=20 Identities=40% Similarity=0.504 Sum_probs=17.6
Q ss_pred EEEEecCCCChHHHHHhhhc
Q 047286 508 VALVGENGNGKSTVISLAER 527 (632)
Q Consensus 508 vaIVG~SGsGKSTL~~ll~r 527 (632)
+.++|++||||||+.++|..
T Consensus 4 IvliG~~G~GKSTig~~La~ 23 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAK 23 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56889999999999998864
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.25 E-value=0.0041 Score=55.26 Aligned_cols=25 Identities=20% Similarity=0.169 Sum_probs=20.9
Q ss_pred EEEEEecCCCChHHHHHhhhcCCCh
Q 047286 507 TVALVGENGNGKSTVISLAERFHNP 531 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y~~ 531 (632)
.+.|+||.||||||+++.|..-|..
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~~~ 26 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKYGI 26 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4689999999999999999765543
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.24 E-value=0.0034 Score=56.43 Aligned_cols=20 Identities=35% Similarity=0.557 Sum_probs=18.1
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 047286 95 TVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~ 114 (632)
.+.|.||.||||||+.+.|.
T Consensus 5 ~I~i~GppGsGKsT~a~~La 24 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIK 24 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46799999999999999986
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=95.24 E-value=0.004 Score=60.58 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=18.2
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
.|||.|++||||||+++.|..
T Consensus 82 iIGIaG~sgSGKSTla~~L~~ 102 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCCCCcHHHHHHHH
Confidence 569999999999999887654
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.22 E-value=0.0045 Score=55.75 Aligned_cols=20 Identities=30% Similarity=0.454 Sum_probs=18.6
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 047286 95 TVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~ 114 (632)
++.|+||.||||||..+.|+
T Consensus 3 iI~i~GppGSGKsT~a~~La 22 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIV 22 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57999999999999999986
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=95.22 E-value=0.0041 Score=55.90 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=20.2
Q ss_pred EEEEEecCCCChHHHHHhhhcCCC
Q 047286 507 TVALVGENGNGKSTVISLAERFHN 530 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y~ 530 (632)
.+.|+||.||||||++++|+.-|.
T Consensus 5 riil~G~pGSGKsT~a~~La~~~g 28 (190)
T d1ak2a1 5 RAVLLGPPGAGKGTQAPKLAKNFC 28 (190)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 467999999999999999985443
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.21 E-value=0.005 Score=54.58 Aligned_cols=95 Identities=19% Similarity=0.129 Sum_probs=54.0
Q ss_pred eCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHHhhcceEEEcccCcccccccccccccccCCCCCCHHHHHHHHHHccch
Q 047286 91 PSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAE 170 (632)
Q Consensus 91 ~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~ 170 (632)
++-+++.++|++||||||+.+-+. .. ....++.+|.. .+.++..+.++
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~--~~-------~~~~~i~~D~~------------------~~~~~~~~~~~----- 59 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHL--VS-------AGYVHVNRDTL------------------GSWQRCVSSCQ----- 59 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHT--GG-------GTCEEEEHHHH------------------CSHHHHHHHHH-----
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH--Hh-------cCCEEEchHHH------------------HHHHHHHHHHH-----
Confidence 445799999999999999998764 10 11222322211 01122222221
Q ss_pred hhHhhCCcccccccccCCCCHHHHHHHHHHHHHHhCCceEEEEecCchHH
Q 047286 171 KSIDKLPLGLDTVVATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLITI 220 (632)
Q Consensus 171 ~~i~~l~~g~~~~v~ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~~ 220 (632)
..+..|....+-..+.+...++.+.+..++..-...++.+....+.+
T Consensus 60 ---~~l~~g~~vIiD~t~~~~~~R~~~~~~a~~~~~~~~~v~l~~~~e~~ 106 (172)
T d1yj5a2 60 ---AALRQGKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQA 106 (172)
T ss_dssp ---HHHHTTCCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHH
T ss_pred ---HHHHCCCCceeeCcCCCHHHHHHHHHHHHhcCCCEEEEEeCCCHHHH
Confidence 12234555556667788888888887777664444555555555544
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=95.19 E-value=0.0032 Score=56.12 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=19.2
Q ss_pred EEEEEecCCCChHHHHHhhhcCC
Q 047286 507 TVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
.+.|.|++||||||++++|...+
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L 25 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 45788999999999999997543
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.18 E-value=0.0046 Score=54.87 Aligned_cols=19 Identities=32% Similarity=0.545 Sum_probs=17.7
Q ss_pred EEEEcCCCchHHHHHHHHH
Q 047286 96 VALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 96 ~~ivG~sGsGKSTLl~ll~ 114 (632)
+.|+||.||||||+.+.|+
T Consensus 3 I~i~G~pGSGKsT~a~~La 21 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIV 21 (182)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6799999999999999986
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=95.17 E-value=0.004 Score=58.06 Aligned_cols=21 Identities=38% Similarity=0.575 Sum_probs=18.6
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
+|+|+|+.|||||||++.|.+
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~ 22 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGR 22 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHH
Confidence 579999999999999987764
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=95.14 E-value=0.004 Score=60.56 Aligned_cols=40 Identities=20% Similarity=0.438 Sum_probs=27.4
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCCcHHhhcceEEEcccCc
Q 047286 95 TVALVGQSGSGKSTVINLVESFRFYAPEAEQEKIGLVSKEPI 136 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~~~~~~~~~~r~~i~~v~Q~~~ 136 (632)
++||.|++||||||+.+.|.......+ ...++..+++|.+
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~--~~~~v~~Is~D~F 121 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWP--EHRRVELITTDGF 121 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTST--TCCCEEEEEGGGG
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHhhhc--CCCceEEEeeeee
Confidence 789999999999999998852211000 0134777888764
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=95.14 E-value=0.0044 Score=55.16 Aligned_cols=21 Identities=38% Similarity=0.490 Sum_probs=18.8
Q ss_pred CEEEEEcCCCchHHHHHHHHH
Q 047286 94 TTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 94 e~~~ivG~sGsGKSTLl~ll~ 114 (632)
+++.|.|++||||||+.+.|.
T Consensus 2 kiivi~G~~GsGKTT~~~~La 22 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVK 22 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 467889999999999999996
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=95.09 E-value=0.0047 Score=55.53 Aligned_cols=21 Identities=48% Similarity=0.719 Sum_probs=19.1
Q ss_pred EEEEEcCCCchHHHHHHHHHh
Q 047286 95 TVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~ 115 (632)
++||.|++||||||+.+.|..
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999863
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.08 E-value=0.0052 Score=54.07 Aligned_cols=21 Identities=43% Similarity=0.601 Sum_probs=19.2
Q ss_pred EEEEEcCCCchHHHHHHHHHh
Q 047286 95 TVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~ 115 (632)
.++|+|+.|+|||||++.|.+
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~ 22 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVK 22 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999998874
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=95.03 E-value=0.0054 Score=54.64 Aligned_cols=20 Identities=30% Similarity=0.567 Sum_probs=18.2
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 047286 95 TVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~ 114 (632)
.+.|+||.||||||+.+.|+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La 21 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIV 21 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46899999999999999986
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=95.03 E-value=0.0049 Score=54.89 Aligned_cols=23 Identities=17% Similarity=0.381 Sum_probs=20.5
Q ss_pred EEEEEecCCCChHHHHHhhhcCC
Q 047286 507 TVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
.|||||++.+|||||++.|.+..
T Consensus 7 nIaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Confidence 48999999999999999998653
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.01 E-value=0.0052 Score=53.85 Aligned_cols=19 Identities=47% Similarity=0.611 Sum_probs=17.2
Q ss_pred EEEEcCCCchHHHHHHHHH
Q 047286 96 VALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 96 ~~ivG~sGsGKSTLl~ll~ 114 (632)
+.++|++||||||+.++|.
T Consensus 4 IvliG~~G~GKSTig~~La 22 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLA 22 (165)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5678999999999999995
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.00 E-value=0.0049 Score=54.74 Aligned_cols=21 Identities=38% Similarity=0.563 Sum_probs=19.2
Q ss_pred EEEEEcCCCchHHHHHHHHHh
Q 047286 95 TVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~ 115 (632)
.++|+|++|+|||||+|.|.+
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~ 22 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTG 22 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999974
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=94.95 E-value=0.0056 Score=53.41 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=19.6
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
+|+|||++|||||||++.|.+-
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~ 25 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGE 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 5899999999999999988763
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=94.95 E-value=0.0053 Score=56.30 Aligned_cols=29 Identities=17% Similarity=0.200 Sum_probs=23.4
Q ss_pred EEEEEecCCCChHHHHHhhhcCCChhhhc
Q 047286 507 TVALVGENGNGKSTVISLAERFHNPEQVI 535 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y~~~~~~ 535 (632)
+|+|-||.||||||+.++|..-|.-..+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~gl~~iS 33 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQWHLLD 33 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEC
Confidence 57999999999999999998766544333
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.93 E-value=0.0051 Score=55.48 Aligned_cols=25 Identities=24% Similarity=0.223 Sum_probs=21.6
Q ss_pred EEEEEecCCCChHHHHHhhhcCCCh
Q 047286 507 TVALVGENGNGKSTVISLAERFHNP 531 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y~~ 531 (632)
+|-|+||.||||||+++.|..-|.-
T Consensus 10 iI~l~G~pGSGKsT~a~~La~~~g~ 34 (194)
T d3adka_ 10 IIFVVGGPGSGKGTQCEKIVQKYGY 34 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5789999999999999999876653
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=94.92 E-value=0.0062 Score=53.98 Aligned_cols=22 Identities=41% Similarity=0.563 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHHhC
Q 047286 95 TVALVGQSGSGKSTVINLVESF 116 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~~ 116 (632)
+++|+|++|+|||||++.|.+.
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999998753
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.85 E-value=0.0066 Score=55.62 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=22.1
Q ss_pred eCCCEEEEEcCCCchHHHHHHHHH
Q 047286 91 PSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 91 ~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
++|.+++|-|+-||||||+.+.|.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~ 24 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLV 24 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999999885
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.81 E-value=0.0069 Score=53.46 Aligned_cols=21 Identities=38% Similarity=0.597 Sum_probs=19.2
Q ss_pred EEEEEcCCCchHHHHHHHHHh
Q 047286 95 TVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~ 115 (632)
+++|+|.+|+|||||+|.|.+
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~ 27 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLG 27 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999974
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.80 E-value=0.0069 Score=55.32 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=21.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHH
Q 047286 92 SGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 92 ~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
+|.+++|-|+-||||||+++.|.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~ 23 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVV 23 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999999885
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.79 E-value=0.0052 Score=54.84 Aligned_cols=20 Identities=50% Similarity=0.712 Sum_probs=18.4
Q ss_pred EEEEcCCCchHHHHHHHHHh
Q 047286 96 VALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 96 ~~ivG~sGsGKSTLl~ll~~ 115 (632)
+||+|++++|||||+|.|.+
T Consensus 4 VaiiG~~nvGKSSLin~L~~ 23 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSS 23 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEE
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 79999999999999999853
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.79 E-value=0.0069 Score=54.94 Aligned_cols=22 Identities=23% Similarity=0.554 Sum_probs=19.9
Q ss_pred EEEEEcCCCchHHHHHHHHHhC
Q 047286 95 TVALVGQSGSGKSTVINLVESF 116 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~~ 116 (632)
.++|+|++|||||||++.|.+-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999998753
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.75 E-value=0.0071 Score=54.85 Aligned_cols=20 Identities=20% Similarity=0.416 Sum_probs=18.5
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 047286 95 TVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~ 114 (632)
+++++|.+||||||+.+.|+
T Consensus 4 li~l~GlpgsGKSTla~~L~ 23 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLT 23 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68899999999999999886
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=94.74 E-value=0.0075 Score=51.82 Aligned_cols=21 Identities=24% Similarity=0.510 Sum_probs=18.4
Q ss_pred EEEEEcCCCchHHHHHHHHHh
Q 047286 95 TVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~ 115 (632)
.++|+|++|+|||||++-+.+
T Consensus 2 kivlvG~~~vGKSsLi~~l~~ 22 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKL 22 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999998753
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.73 E-value=0.006 Score=61.86 Aligned_cols=23 Identities=39% Similarity=0.599 Sum_probs=20.4
Q ss_pred EEEEEecCCCChHHHHHhhhcCC
Q 047286 507 TVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
.|||+|+||+|||||+|.|.|..
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37999999999999999998753
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.71 E-value=0.0071 Score=53.62 Aligned_cols=20 Identities=25% Similarity=0.446 Sum_probs=18.0
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 047286 95 TVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~ 114 (632)
.+.|+||.||||||..+.|.
T Consensus 2 ~I~i~G~pGSGKsT~~~~La 21 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIM 21 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999996
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.69 E-value=0.0064 Score=56.55 Aligned_cols=24 Identities=21% Similarity=0.481 Sum_probs=21.4
Q ss_pred EEEEEecCCCChHHHHHhhhcCCC
Q 047286 507 TVALVGENGNGKSTVISLAERFHN 530 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y~ 530 (632)
.|+|-|+.||||||++++|...++
T Consensus 4 ~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 4 KISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp EEEEECSTTSSHHHHHTTTGGGCT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999987653
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.67 E-value=0.0071 Score=53.73 Aligned_cols=23 Identities=30% Similarity=0.300 Sum_probs=19.5
Q ss_pred EEEEEecCCCChHHHHHhhhcCC
Q 047286 507 TVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
.+.|.||.||||||+.+.|..-|
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36799999999999999987544
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=94.63 E-value=0.0077 Score=55.32 Aligned_cols=20 Identities=40% Similarity=0.655 Sum_probs=18.2
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 047286 95 TVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~ 114 (632)
+++|-||+||||||+.++|.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La 24 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIA 24 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47888999999999999996
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=94.62 E-value=0.0093 Score=54.31 Aligned_cols=20 Identities=50% Similarity=0.730 Sum_probs=18.8
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 047286 95 TVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~ 114 (632)
++||.|+.||||||+++.+.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999986
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.62 E-value=0.0084 Score=51.54 Aligned_cols=21 Identities=19% Similarity=0.600 Sum_probs=18.8
Q ss_pred EEEEEcCCCchHHHHHHHHHh
Q 047286 95 TVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~ 115 (632)
.++|+|++|+|||||++.+.+
T Consensus 2 KI~liG~~nvGKSSLln~l~~ 22 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKN 22 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999998864
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=94.61 E-value=0.0046 Score=59.31 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=15.3
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
.|||.|+|||||||+.+.|..
T Consensus 6 IIgIaG~SGSGKTTva~~l~~ 26 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQ 26 (288)
T ss_dssp EEEEESCC---CCTHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 579999999999999986654
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=94.61 E-value=0.0057 Score=55.10 Aligned_cols=22 Identities=45% Similarity=0.564 Sum_probs=19.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHH
Q 047286 93 GTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 93 Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
.-+++|-|+.||||||+++.|.
T Consensus 9 p~~I~ieG~~GsGKTTl~~~L~ 30 (197)
T d2vp4a1 9 PFTVLIEGNIGSGKTTYLNHFE 30 (197)
T ss_dssp CEEEEEECSTTSCHHHHHHTTG
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3489999999999999999986
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.58 E-value=0.0085 Score=53.21 Aligned_cols=20 Identities=35% Similarity=0.504 Sum_probs=18.0
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 047286 95 TVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~ 114 (632)
.+.|+||.||||||+.+.|.
T Consensus 2 ~I~i~G~pGsGKsT~a~~La 21 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLA 21 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36899999999999999986
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=94.58 E-value=0.0082 Score=54.93 Aligned_cols=20 Identities=30% Similarity=0.576 Sum_probs=18.9
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 047286 95 TVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~ 114 (632)
+++|.||.||||||+.+.|.
T Consensus 5 iI~I~GppGSGKgT~ak~La 24 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMA 24 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 78999999999999999986
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=94.57 E-value=0.0085 Score=53.31 Aligned_cols=21 Identities=43% Similarity=0.653 Sum_probs=19.1
Q ss_pred EEEEEcCCCchHHHHHHHHHh
Q 047286 95 TVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~ 115 (632)
.++|+|++|+|||||++.|.+
T Consensus 10 kV~iiG~~~~GKSTLin~l~~ 30 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILN 30 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHC
Confidence 589999999999999998874
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=94.55 E-value=0.0089 Score=51.75 Aligned_cols=22 Identities=23% Similarity=0.499 Sum_probs=19.2
Q ss_pred EEEEEcCCCchHHHHHHHHHhC
Q 047286 95 TVALVGQSGSGKSTVINLVESF 116 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~~ 116 (632)
.++|+|++|+|||||++.+.+-
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3899999999999999988643
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=94.54 E-value=0.0077 Score=55.04 Aligned_cols=22 Identities=45% Similarity=0.545 Sum_probs=19.5
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
.|||+|..||||||+++.+..+
T Consensus 5 iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHC
Confidence 6899999999999999988743
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=94.52 E-value=0.0056 Score=54.37 Aligned_cols=20 Identities=35% Similarity=0.601 Sum_probs=18.6
Q ss_pred EEEEcCCCchHHHHHHHHHh
Q 047286 96 VALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 96 ~~ivG~sGsGKSTLl~ll~~ 115 (632)
+||+|.+++|||||++.|.+
T Consensus 4 VaivG~~nvGKSTLin~L~~ 23 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTR 23 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCS
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 79999999999999999964
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=94.47 E-value=0.009 Score=51.69 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHHhC
Q 047286 95 TVALVGQSGSGKSTVINLVESF 116 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~~ 116 (632)
.++++|++|+|||||++.|.+.
T Consensus 3 kI~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 3 KVVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999998754
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.40 E-value=0.0063 Score=56.60 Aligned_cols=23 Identities=26% Similarity=0.508 Sum_probs=21.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHH
Q 047286 92 SGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 92 ~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
++.+++|-|+-||||||++++|.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~ 23 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILK 23 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTG
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999999986
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=94.33 E-value=0.0058 Score=56.02 Aligned_cols=40 Identities=20% Similarity=0.406 Sum_probs=26.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCCcHHhhcceEEEcccC
Q 047286 92 SGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQEKIGLVSKEP 135 (632)
Q Consensus 92 ~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~~r~~i~~v~Q~~ 135 (632)
+-.+++++||+|+||||.+-=|. ..+ ....++++++.=|.
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLA--a~~--~~~~~kV~lit~Dt 49 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLA--KMF--VDEGKSVVLAAADT 49 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHH--HHH--HHTTCCEEEEEECT
T ss_pred CCEEEEEECCCCCCHHHHHHHHH--HHH--HHCCCceEEEeecc
Confidence 44588999999999999875433 111 11235677777665
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=94.29 E-value=0.0091 Score=58.58 Aligned_cols=22 Identities=27% Similarity=0.447 Sum_probs=19.4
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
+|||+||.|+|||||+.-|.+.
T Consensus 56 ~IgitG~pGaGKSTLi~~l~~~ 77 (327)
T d2p67a1 56 RLGVTGTPGAGKSTFLEAFGML 77 (327)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEeeCCCCCCHHHHHHHHHHH
Confidence 5799999999999999977654
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=94.27 E-value=0.0083 Score=52.89 Aligned_cols=21 Identities=19% Similarity=0.589 Sum_probs=19.0
Q ss_pred CEEEEEcCCCchHHHHHHHHH
Q 047286 94 TTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 94 e~~~ivG~sGsGKSTLl~ll~ 114 (632)
-.++|+|++|+|||||++.+.
T Consensus 14 ~kI~lvG~~~vGKTsLl~~l~ 34 (186)
T d1f6ba_ 14 GKLVFLGLDNAGKTTLLHMLK 34 (186)
T ss_dssp EEEEEEEETTSSHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 368899999999999999886
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=94.27 E-value=0.011 Score=52.04 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=18.7
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
+|.|||+.|||||||++-|.+
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~ 37 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSM 37 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999987664
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.27 E-value=0.011 Score=54.32 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=21.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHH
Q 047286 92 SGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 92 ~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
+|.+++|-|+-||||||++++|.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~ 24 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILY 24 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHH
T ss_pred CeEEEEEECCCCCcHHHHHHHHH
Confidence 79999999999999999999986
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.24 E-value=0.0095 Score=54.09 Aligned_cols=21 Identities=24% Similarity=0.265 Sum_probs=18.7
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
+|+|+|+.|+|||||++.|.+
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~ 22 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLT 22 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999987764
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.23 E-value=0.011 Score=54.11 Aligned_cols=24 Identities=46% Similarity=0.511 Sum_probs=21.6
Q ss_pred eCCCEEEEEcCCCchHHHHHHHHH
Q 047286 91 PSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 91 ~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
++|.++-|.|.+||||||+.+.|.
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~ 45 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELE 45 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 467899999999999999999875
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.20 E-value=0.01 Score=52.03 Aligned_cols=20 Identities=15% Similarity=0.385 Sum_probs=17.9
Q ss_pred EEEEEecCCCChHHHHHhhh
Q 047286 507 TVALVGENGNGKSTVISLAE 526 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~ 526 (632)
++.+||++|+|||||++-+.
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~ 26 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYA 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 68999999999999998654
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.17 E-value=0.011 Score=54.81 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=22.3
Q ss_pred eeCCCEEEEEcCCCchHHHHHHHH
Q 047286 90 VPSGTTVALVGQSGSGKSTVINLV 113 (632)
Q Consensus 90 i~~Ge~~~ivG~sGsGKSTLl~ll 113 (632)
+++|+++.|.||+|||||||+.-+
T Consensus 31 i~~G~~~li~G~pGsGKT~l~lq~ 54 (251)
T d1szpa2 31 VETGSITELFGEFRTGKSQLCHTL 54 (251)
T ss_dssp EESSSEEEEEESTTSSHHHHHHHH
T ss_pred CcCCeEEEEEcCCCCCHHHHHHHH
Confidence 899999999999999999998755
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=94.14 E-value=0.012 Score=52.81 Aligned_cols=20 Identities=40% Similarity=0.639 Sum_probs=18.4
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 047286 95 TVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~ 114 (632)
.++|+||.||||||+.+.|+
T Consensus 8 rIiliG~PGSGKtT~a~~La 27 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRIT 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 57899999999999999996
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.13 E-value=0.011 Score=52.09 Aligned_cols=20 Identities=25% Similarity=0.542 Sum_probs=17.9
Q ss_pred EEEEEecCCCChHHHHHhhh
Q 047286 507 TVALVGENGNGKSTVISLAE 526 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~ 526 (632)
++++||++|+|||||++-+.
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~ 23 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYV 23 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 58999999999999998665
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.11 E-value=0.012 Score=52.12 Aligned_cols=20 Identities=30% Similarity=0.552 Sum_probs=17.9
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 047286 95 TVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~ 114 (632)
.+.|+||.||||||+.+.|.
T Consensus 4 rIvl~G~pGSGKtT~a~~La 23 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQ 23 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36788999999999999996
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=94.09 E-value=0.011 Score=53.00 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=21.0
Q ss_pred EEEEEecCCCChHHHHHhhhcCCCh
Q 047286 507 TVALVGENGNGKSTVISLAERFHNP 531 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y~~ 531 (632)
.+.|+||.||||||+.+.|..-|.-
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~g~ 32 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHFEL 32 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHBCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHCC
Confidence 4679999999999999999875543
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=94.07 E-value=0.012 Score=51.73 Aligned_cols=21 Identities=24% Similarity=0.463 Sum_probs=18.4
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
+|++||++|+|||||++-+.+
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 579999999999999987654
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=94.05 E-value=0.011 Score=54.02 Aligned_cols=41 Identities=27% Similarity=0.380 Sum_probs=26.5
Q ss_pred eCCCEEEEEcCCCchHHHHHHHHHhCCCCCcHHhhcceEEEcccC
Q 047286 91 PSGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQEKIGLVSKEP 135 (632)
Q Consensus 91 ~~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~~r~~i~~v~Q~~ 135 (632)
++..++.++||+|+||||.+-=|. ..+ ....++++++.-|.
T Consensus 8 ~~~~vi~lvGp~GvGKTTTiaKLA--~~~--~~~g~kV~lit~Dt 48 (207)
T d1ls1a2 8 KDRNLWFLVGLQGSGKTTTAAKLA--LYY--KGKGRRPLLVAADT 48 (207)
T ss_dssp CSSEEEEEECCTTTTHHHHHHHHH--HHH--HHTTCCEEEEECCS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH--HHH--HHCCCcEEEEeccc
Confidence 345678999999999999876553 111 11124577776654
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=94.03 E-value=0.0034 Score=56.42 Aligned_cols=25 Identities=32% Similarity=0.473 Sum_probs=20.2
Q ss_pred EEEee-EEEEEecCCCChHHHHHhhh
Q 047286 502 IVFEH-TVALVGENGNGKSTVISLAE 526 (632)
Q Consensus 502 I~f~~-~vaIVG~SGsGKSTL~~ll~ 526 (632)
++|.+ .+.|+||+|||||||+.+|.
T Consensus 20 i~f~~~~tvi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 20 FDLDELVTTLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp ECHHHHHHHHHSCCSHHHHHHHHHHH
T ss_pred EEcCCCeEEEECCCCCCHHHHHHHHH
Confidence 44433 68999999999999998775
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.00 E-value=0.012 Score=52.18 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=20.1
Q ss_pred EEEEEecCCCChHHHHHhhhcCCC
Q 047286 507 TVALVGENGNGKSTVISLAERFHN 530 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y~ 530 (632)
.+.|.||.||||||++++|.--|.
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~g 27 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERFH 27 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 367889999999999999976543
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=93.99 E-value=0.0079 Score=58.99 Aligned_cols=21 Identities=38% Similarity=0.594 Sum_probs=19.0
Q ss_pred CEEEEEcCCCchHHHHHHHHH
Q 047286 94 TTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 94 e~~~ivG~sGsGKSTLl~ll~ 114 (632)
.-+.|.||.||||||+++.|.
T Consensus 167 ~nili~G~tgSGKTT~l~al~ 187 (323)
T d1g6oa_ 167 KNVIVCGGTGSGKTTYIKSIM 187 (323)
T ss_dssp CCEEEEESTTSSHHHHHHHHG
T ss_pred CCEEEEeeccccchHHHHHHh
Confidence 448999999999999999987
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=93.91 E-value=0.0079 Score=54.96 Aligned_cols=39 Identities=23% Similarity=0.445 Sum_probs=25.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCCcHHhhcceEEEcccCc
Q 047286 94 TTVALVGQSGSGKSTVINLVESFRFYAPEAEQEKIGLVSKEPI 136 (632)
Q Consensus 94 e~~~ivG~sGsGKSTLl~ll~~~~~~~~~~~r~~i~~v~Q~~~ 136 (632)
.+++++||+|+||||.+-=|. ..+. ...++++++.-|.+
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA--~~~~--~~g~kV~lit~Dt~ 48 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLA--RQFE--QQGKSVMLAAGDTF 48 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHH--HHHH--TTTCCEEEECCCTT
T ss_pred EEEEEECCCCCCHHHHHHHHH--HHHH--HCCCcEEEEecccc
Confidence 578999999999999875333 1111 11246787776653
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.90 E-value=0.013 Score=51.06 Aligned_cols=20 Identities=30% Similarity=0.419 Sum_probs=17.4
Q ss_pred EEEEEecCCCChHHHHHhhh
Q 047286 507 TVALVGENGNGKSTVISLAE 526 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~ 526 (632)
+|++||++|+|||||++-+.
T Consensus 4 Kv~liG~~~vGKSsLi~rl~ 23 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYC 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 58999999999999997444
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=93.88 E-value=0.013 Score=55.38 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHHhC
Q 047286 95 TVALVGQSGSGKSTVINLVESF 116 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~~ 116 (632)
.++|+|.+|+|||||+|.|.|-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~ 55 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGE 55 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999999753
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=93.85 E-value=0.014 Score=50.69 Aligned_cols=21 Identities=19% Similarity=0.506 Sum_probs=18.8
Q ss_pred EEEEEcCCCchHHHHHHHHHh
Q 047286 95 TVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~ 115 (632)
.++|+|+.|||||||++.+.+
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~ 24 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNG 24 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 478999999999999998864
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=93.84 E-value=0.016 Score=52.70 Aligned_cols=22 Identities=55% Similarity=0.668 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHHhC
Q 047286 95 TVALVGQSGSGKSTVINLVESF 116 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~~ 116 (632)
++||.|+.||||||..+.+...
T Consensus 5 iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHC
Confidence 7899999999999999998633
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.79 E-value=0.013 Score=55.99 Aligned_cols=20 Identities=25% Similarity=0.252 Sum_probs=17.1
Q ss_pred EEEEEecCCCChHHHHHhhh
Q 047286 507 TVALVGENGNGKSTVISLAE 526 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~ 526 (632)
.|||-|++|||||||...|.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~ 48 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIY 48 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHH
Confidence 56999999999999987553
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=93.78 E-value=0.011 Score=54.12 Aligned_cols=41 Identities=32% Similarity=0.498 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCCcHHhhcceEEEcccCc
Q 047286 92 SGTTVALVGQSGSGKSTVINLVESFRFYAPEAEQEKIGLVSKEPI 136 (632)
Q Consensus 92 ~Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~~r~~i~~v~Q~~~ 136 (632)
+..+++++||+|+||||.+-=|. ..+ ....++++++.-|.+
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA--~~~--~~~g~kV~lit~Dt~ 51 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLA--YFY--KKKGFKVGLVGADVY 51 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHH--HHH--HHTTCCEEEEECCCS
T ss_pred CCEEEEEECCCCCCHHHHHHHHH--HHH--HHCCCceEEEEeecc
Confidence 34679999999999999875333 111 112346888877653
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=93.76 E-value=0.011 Score=55.75 Aligned_cols=22 Identities=27% Similarity=0.292 Sum_probs=19.3
Q ss_pred EEEEecCCCChHHHHHhhhcCC
Q 047286 508 VALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 508 vaIVG~SGsGKSTL~~ll~r~y 529 (632)
+-++||+|||||||++.|++.+
T Consensus 35 ilL~GpPGtGKT~la~~la~~~ 56 (273)
T d1gvnb_ 35 FLLGGQPGSGKTSLRSAIFEET 56 (273)
T ss_dssp EEEECCTTSCTHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999998754
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.74 E-value=0.013 Score=54.61 Aligned_cols=24 Identities=21% Similarity=0.463 Sum_probs=21.8
Q ss_pred eeCCCEEEEEcCCCchHHHHHHHH
Q 047286 90 VPSGTTVALVGQSGSGKSTVINLV 113 (632)
Q Consensus 90 i~~Ge~~~ivG~sGsGKSTLl~ll 113 (632)
+++|+++.|.||+||||||+.--+
T Consensus 33 lp~G~~~li~G~pGsGKT~~~lq~ 56 (254)
T d1pzna2 33 IETQAITEVFGEFGSGKTQLAHTL 56 (254)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHH
T ss_pred ccCCEEEEEEcCCCCCHHHHHHHH
Confidence 899999999999999999998643
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=93.73 E-value=0.0099 Score=52.51 Aligned_cols=21 Identities=38% Similarity=0.653 Sum_probs=19.1
Q ss_pred EEEEEcCCCchHHHHHHHHHh
Q 047286 95 TVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~ 115 (632)
.++|+|++++|||||+|.|.+
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~ 38 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTN 38 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999863
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.71 E-value=0.015 Score=50.87 Aligned_cols=20 Identities=35% Similarity=0.481 Sum_probs=17.6
Q ss_pred EEEEEecCCCChHHHHHhhh
Q 047286 507 TVALVGENGNGKSTVISLAE 526 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~ 526 (632)
+|++||.+|+|||||++-+.
T Consensus 4 Ki~viG~~~vGKTsLi~r~~ 23 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFV 23 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999997544
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.70 E-value=0.015 Score=50.67 Aligned_cols=20 Identities=25% Similarity=0.330 Sum_probs=18.0
Q ss_pred EEEEEecCCCChHHHHHhhh
Q 047286 507 TVALVGENGNGKSTVISLAE 526 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~ 526 (632)
+|+|+|++|+|||||++-+.
T Consensus 6 Kv~liG~~~vGKTsLl~~~~ 25 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFV 25 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 68999999999999998654
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.69 E-value=0.014 Score=51.78 Aligned_cols=20 Identities=25% Similarity=0.571 Sum_probs=17.8
Q ss_pred EEEEEecCCCChHHHHHhhh
Q 047286 507 TVALVGENGNGKSTVISLAE 526 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~ 526 (632)
+|++||.+|+|||||++-+.
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~ 23 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYV 23 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 58999999999999998655
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=93.58 E-value=0.015 Score=53.05 Aligned_cols=21 Identities=38% Similarity=0.427 Sum_probs=18.4
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
+|-|.|.||||||||++.|..
T Consensus 26 vIwltGlsGsGKTTia~~L~~ 46 (208)
T d1m7ga_ 26 TIWLTGLSASGKSTLAVELEH 46 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999987763
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.56 E-value=0.017 Score=50.38 Aligned_cols=20 Identities=30% Similarity=0.420 Sum_probs=17.8
Q ss_pred EEEEEecCCCChHHHHHhhh
Q 047286 507 TVALVGENGNGKSTVISLAE 526 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~ 526 (632)
+|++||++|+|||||++-+.
T Consensus 5 Ki~viG~~~vGKTsli~~l~ 24 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLI 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999998654
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.55 E-value=0.016 Score=51.48 Aligned_cols=21 Identities=24% Similarity=0.412 Sum_probs=18.3
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
+|+|||++|+|||||++-+..
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 589999999999999986653
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=93.52 E-value=0.015 Score=54.86 Aligned_cols=21 Identities=38% Similarity=0.514 Sum_probs=19.0
Q ss_pred CEEEEEcCCCchHHHHHHHHH
Q 047286 94 TTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 94 e~~~ivG~sGsGKSTLl~ll~ 114 (632)
..+.+.||+|||||||.+.|+
T Consensus 33 ~~ilL~GpPGtGKT~la~~la 53 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIF 53 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 458899999999999999997
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=93.51 E-value=0.016 Score=50.32 Aligned_cols=20 Identities=30% Similarity=0.501 Sum_probs=17.6
Q ss_pred EEEEEecCCCChHHHHHhhh
Q 047286 507 TVALVGENGNGKSTVISLAE 526 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~ 526 (632)
++.++|++|+|||||++-+.
T Consensus 4 ki~i~G~~~~GKTsLl~~l~ 23 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIA 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999998554
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.50 E-value=0.017 Score=50.45 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=19.5
Q ss_pred EEEEEecCCCChHHHHHhhhcCC
Q 047286 507 TVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
+|++||.+|+|||||++-+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCcCHHHHHHHHhCCc
Confidence 58999999999999999776643
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.49 E-value=0.016 Score=50.99 Aligned_cols=20 Identities=40% Similarity=0.667 Sum_probs=17.7
Q ss_pred EEEEEecCCCChHHHHHhhh
Q 047286 507 TVALVGENGNGKSTVISLAE 526 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~ 526 (632)
++++||+.|+|||||++-+.
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~ 25 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFT 25 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 68999999999999998553
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=93.48 E-value=0.015 Score=51.26 Aligned_cols=20 Identities=30% Similarity=0.361 Sum_probs=17.0
Q ss_pred EEEEEecCCCChHHHHHhhh
Q 047286 507 TVALVGENGNGKSTVISLAE 526 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~ 526 (632)
-|.|+|+||+||||++..|.
T Consensus 16 gvl~~G~sG~GKStlal~l~ 35 (176)
T d1kkma_ 16 GVLITGDSGVGKSETALELV 35 (176)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 58999999999999986544
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=93.47 E-value=0.0072 Score=52.27 Aligned_cols=21 Identities=33% Similarity=0.575 Sum_probs=19.0
Q ss_pred EEEEEcCCCchHHHHHHHHHh
Q 047286 95 TVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~ 115 (632)
.++|+|++|+|||||++.|.|
T Consensus 2 kI~liG~~n~GKSSLin~l~g 22 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLN 22 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 479999999999999999864
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.47 E-value=0.018 Score=52.16 Aligned_cols=21 Identities=29% Similarity=0.390 Sum_probs=19.0
Q ss_pred EEEEEcCCCchHHHHHHHHHh
Q 047286 95 TVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~ 115 (632)
.++|+|+.|+|||||++.+.+
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~ 22 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLT 22 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999998864
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=93.44 E-value=0.017 Score=51.19 Aligned_cols=21 Identities=24% Similarity=0.513 Sum_probs=18.3
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
+|.+||++|+|||||++-+.+
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999987653
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=93.41 E-value=0.018 Score=51.06 Aligned_cols=21 Identities=19% Similarity=0.476 Sum_probs=19.1
Q ss_pred EEEEEcCCCchHHHHHHHHHh
Q 047286 95 TVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~ 115 (632)
-+||+|+..||||||++.|.+
T Consensus 7 nIaiiG~~naGKSTL~n~L~~ 27 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTE 27 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHT
T ss_pred EEEEEeCCCCcHHHHHHHHHH
Confidence 389999999999999999874
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.40 E-value=0.017 Score=50.25 Aligned_cols=20 Identities=30% Similarity=0.431 Sum_probs=17.8
Q ss_pred EEEEEecCCCChHHHHHhhh
Q 047286 507 TVALVGENGNGKSTVISLAE 526 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~ 526 (632)
+|.+||.+|+|||||++-+.
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~ 24 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 68999999999999997554
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=93.33 E-value=0.014 Score=53.22 Aligned_cols=21 Identities=48% Similarity=0.632 Sum_probs=16.5
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
++++|||+|+||||.+.=|..
T Consensus 8 vi~lvGptGvGKTTTiaKLA~ 28 (207)
T d1okkd2 8 VVLVVGVNGVGKTTTIAKLGR 28 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 569999999999997654444
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=93.32 E-value=0.017 Score=56.49 Aligned_cols=40 Identities=23% Similarity=0.412 Sum_probs=28.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCCcHHhhcceEEEcccCc
Q 047286 93 GTTVALVGQSGSGKSTVINLVESFRFYAPEAEQEKIGLVSKEPI 136 (632)
Q Consensus 93 Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~~r~~i~~v~Q~~~ 136 (632)
.-.+||.||.|||||||++-+.. .+ ...-.+++++.-+|.
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~--~~--~~~g~~vavlavDps 93 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGM--LL--IREGLKVAVIAVDPS 93 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHH--HH--HHTTCCEEEEEECCC
T ss_pred ceEEEeeCCCCCCHHHHHHHHHH--HH--HhcCCceeeecCCCc
Confidence 35799999999999999997741 11 011135888877764
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=93.30 E-value=0.0092 Score=57.10 Aligned_cols=38 Identities=24% Similarity=0.409 Sum_probs=23.5
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCCcHHhhcceEEEcccCc
Q 047286 95 TVALVGQSGSGKSTVINLVESFRFYAPEAEQEKIGLVSKEPI 136 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~~~~~~~~~~r~~i~~v~Q~~~ 136 (632)
++||.|+|||||||+.+.|... .. ...-+..++.+|.+
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i--~~--~~~v~~~iI~~Dsf 43 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQI--FR--REGVKAVSIEGDAF 43 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHH--HH--HHTCCEEEEEGGGG
T ss_pred EEEEECCCCCcHHHHHHHHHHH--Hh--hcCCCeEEEeCCCC
Confidence 8999999999999999987521 00 11123567788763
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.30 E-value=0.02 Score=49.77 Aligned_cols=20 Identities=30% Similarity=0.541 Sum_probs=17.7
Q ss_pred EEEEEecCCCChHHHHHhhh
Q 047286 507 TVALVGENGNGKSTVISLAE 526 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~ 526 (632)
++.+||.+|+|||||++-+.
T Consensus 4 Ki~vvG~~~vGKTSli~~l~ 23 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFV 23 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 58999999999999998554
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=93.29 E-value=0.019 Score=50.64 Aligned_cols=20 Identities=35% Similarity=0.300 Sum_probs=17.0
Q ss_pred EEEEEecCCCChHHHHHhhh
Q 047286 507 TVALVGENGNGKSTVISLAE 526 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~ 526 (632)
-|.|.|+||+||||++..|.
T Consensus 17 gvli~G~sG~GKS~lal~l~ 36 (177)
T d1knxa2 17 GVLLTGRSGIGKSECALDLI 36 (177)
T ss_dssp EEEEEESSSSSHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 58999999999999986443
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=93.23 E-value=0.025 Score=52.42 Aligned_cols=24 Identities=17% Similarity=0.387 Sum_probs=22.2
Q ss_pred eeCCCEEEEEcCCCchHHHHHHHH
Q 047286 90 VPSGTTVALVGQSGSGKSTVINLV 113 (632)
Q Consensus 90 i~~Ge~~~ivG~sGsGKSTLl~ll 113 (632)
+++|.++.|.||+||||||++.-+
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qi 46 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRF 46 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHH
Confidence 789999999999999999998754
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=93.21 E-value=0.024 Score=49.02 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=22.2
Q ss_pred eeCCCEEEEEcCCCchHHHHHHHHH
Q 047286 90 VPSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 90 i~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
.++|.++++.|+=||||||+.|.+.
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~ 54 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGML 54 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCeEEEEecCCCccHHHHHHHHH
Confidence 4578999999999999999999774
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=93.20 E-value=0.021 Score=49.93 Aligned_cols=21 Identities=29% Similarity=0.501 Sum_probs=18.8
Q ss_pred EEEEEcCCCchHHHHHHHHHh
Q 047286 95 TVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~ 115 (632)
.++|+|.+|||||||++-+.+
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~ 37 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSM 37 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 588999999999999998864
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.19 E-value=0.023 Score=52.81 Aligned_cols=28 Identities=18% Similarity=0.248 Sum_probs=22.1
Q ss_pred EEEeeC-CCEEEEEcCCCchHHHHHHHHH
Q 047286 87 LQHVPS-GTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 87 ~~~i~~-Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
++.+.+ +.++.|.|||.|||||++|.+.
T Consensus 34 di~l~~~~~~~iiTGpN~~GKSt~lk~i~ 62 (234)
T d1wb9a2 34 PLNLSPQRRMLIITGPNMGGKSTYMRQTA 62 (234)
T ss_dssp EEEECSSSCEEEEECCTTSSHHHHHHHHH
T ss_pred eEEECCCceEEEEeccCchhhHHHHHHHH
Confidence 445543 4688999999999999999763
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=93.19 E-value=0.025 Score=51.83 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=20.9
Q ss_pred eeCCCEEEEEcCCCchHHHHHH
Q 047286 90 VPSGTTVALVGQSGSGKSTVIN 111 (632)
Q Consensus 90 i~~Ge~~~ivG~sGsGKSTLl~ 111 (632)
+++|+++.|.|++|+|||||+.
T Consensus 23 i~~G~~~~I~G~~G~GKT~la~ 44 (242)
T d1tf7a1 23 LPIGRSTLVSGTSGTGKTLFSI 44 (242)
T ss_dssp EETTSEEEEEESTTSSHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHH
Confidence 8999999999999999999975
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.19 E-value=0.02 Score=50.02 Aligned_cols=21 Identities=24% Similarity=0.547 Sum_probs=18.4
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
++.|||.+|+|||||++-+..
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999986653
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.11 E-value=0.024 Score=52.92 Aligned_cols=21 Identities=38% Similarity=0.572 Sum_probs=19.3
Q ss_pred CEEEEEcCCCchHHHHHHHHH
Q 047286 94 TTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 94 e~~~ivG~sGsGKSTLl~ll~ 114 (632)
..+.|.||+|+||||++++++
T Consensus 53 ~~lll~GPpG~GKTt~a~~la 73 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVA 73 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 468899999999999999997
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=93.11 E-value=0.03 Score=48.54 Aligned_cols=21 Identities=43% Similarity=0.651 Sum_probs=18.3
Q ss_pred EEEEEcCCCchHHHHHHHHHh
Q 047286 95 TVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~ 115 (632)
.++++|++|+|||||++.+.+
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 368999999999999997764
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.09 E-value=0.021 Score=50.16 Aligned_cols=20 Identities=35% Similarity=0.584 Sum_probs=17.6
Q ss_pred EEEEEecCCCChHHHHHhhh
Q 047286 507 TVALVGENGNGKSTVISLAE 526 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~ 526 (632)
+|.+||++|+|||||++-+.
T Consensus 8 KI~vvG~~~vGKSSli~~~~ 27 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYV 27 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999997554
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.08 E-value=0.03 Score=48.98 Aligned_cols=20 Identities=30% Similarity=0.609 Sum_probs=18.1
Q ss_pred EEEEcCCCchHHHHHHHHHh
Q 047286 96 VALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 96 ~~ivG~sGsGKSTLl~ll~~ 115 (632)
++++|++|+|||||++.+.+
T Consensus 5 i~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHc
Confidence 78999999999999998764
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=93.06 E-value=0.013 Score=53.45 Aligned_cols=21 Identities=33% Similarity=0.480 Sum_probs=12.4
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
++++|||+|+||||.+.=|..
T Consensus 14 vi~lvGptGvGKTTTiAKLA~ 34 (211)
T d1j8yf2 14 VIMLVGVQGTGKATTAGKLAY 34 (211)
T ss_dssp EEEEECSCCC----HHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 469999999999997644443
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.05 E-value=0.024 Score=52.68 Aligned_cols=25 Identities=16% Similarity=0.218 Sum_probs=22.7
Q ss_pred eeCCCEEEEEcCCCchHHHHHHHHH
Q 047286 90 VPSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 90 i~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
+++|+++.|.||+||||||+...+.
T Consensus 34 ip~G~~~~i~G~~GsGKT~lalq~~ 58 (258)
T d1v5wa_ 34 IESMAITEAFGEFRTGKTQLSHTLC 58 (258)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHH
Confidence 8999999999999999999987553
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.04 E-value=0.021 Score=50.11 Aligned_cols=20 Identities=25% Similarity=0.473 Sum_probs=17.8
Q ss_pred EEEEEecCCCChHHHHHhhh
Q 047286 507 TVALVGENGNGKSTVISLAE 526 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~ 526 (632)
+|.+||++|+|||||++-+.
T Consensus 5 KivvvG~~~vGKTsli~r~~ 24 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFT 24 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHh
Confidence 68999999999999998654
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.01 E-value=0.022 Score=52.55 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=18.1
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 047286 95 TVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~ 114 (632)
.+.|.||+|+||||+++++.
T Consensus 47 ~lll~Gp~G~GKTtla~~ia 66 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALA 66 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHH
Confidence 37899999999999999886
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=93.00 E-value=0.021 Score=53.01 Aligned_cols=20 Identities=25% Similarity=0.328 Sum_probs=18.5
Q ss_pred EEEEEecCCCChHHHHHhhh
Q 047286 507 TVALVGENGNGKSTVISLAE 526 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~ 526 (632)
.|||.|+-||||||+++.|.
T Consensus 3 iIgiTG~igSGKsTva~~l~ 22 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIM 22 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999984
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=92.98 E-value=0.016 Score=52.75 Aligned_cols=20 Identities=40% Similarity=0.599 Sum_probs=16.0
Q ss_pred EEEEEecCCCChHHHHHhhh
Q 047286 507 TVALVGENGNGKSTVISLAE 526 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~ 526 (632)
++++|||+|+||||.+.=|.
T Consensus 11 vi~lvGptGvGKTTTiAKLA 30 (211)
T d2qy9a2 11 VILMVGVNGVGKTTTIGKLA 30 (211)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57999999999999664334
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=92.96 E-value=0.019 Score=55.81 Aligned_cols=21 Identities=19% Similarity=0.469 Sum_probs=18.9
Q ss_pred EEEecCCCChHHHHHhhhcCC
Q 047286 509 ALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 509 aIVG~SGsGKSTL~~ll~r~y 529 (632)
.++||||||||+|++.|.+..
T Consensus 53 Ll~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 53 LMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp EEECCTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHhhcc
Confidence 689999999999999998753
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.93 E-value=0.022 Score=49.89 Aligned_cols=23 Identities=35% Similarity=0.668 Sum_probs=19.0
Q ss_pred EEEeeEEEEEecCCCChHHHHHhhh
Q 047286 502 IVFEHTVALVGENGNGKSTVISLAE 526 (632)
Q Consensus 502 I~f~~~vaIVG~SGsGKSTL~~ll~ 526 (632)
|.| ++++||.+|+|||||++-+.
T Consensus 2 ~~~--Ki~vvG~~~vGKTsli~~~~ 24 (170)
T d1i2ma_ 2 VQF--KLVLVGDGGTGKTTFVKRHL 24 (170)
T ss_dssp EEE--EEEEEECTTSSHHHHHHTTC
T ss_pred eeE--EEEEECCCCcCHHHHHHHHH
Confidence 455 69999999999999987543
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.93 E-value=0.023 Score=51.36 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=18.7
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
.|+|-|.-||||||++++|..
T Consensus 2 lI~ieG~dGsGKST~~~~L~~ 22 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSG 22 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998874
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.93 E-value=0.032 Score=48.64 Aligned_cols=20 Identities=20% Similarity=0.443 Sum_probs=18.0
Q ss_pred EEEEcCCCchHHHHHHHHHh
Q 047286 96 VALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 96 ~~ivG~sGsGKSTLl~ll~~ 115 (632)
++++|++|+|||||++-+.+
T Consensus 8 i~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHc
Confidence 88999999999999997753
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.92 E-value=0.024 Score=49.11 Aligned_cols=20 Identities=25% Similarity=0.476 Sum_probs=17.9
Q ss_pred EEEEEecCCCChHHHHHhhh
Q 047286 507 TVALVGENGNGKSTVISLAE 526 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~ 526 (632)
+|.+||..|+|||||++-+.
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~ 21 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFM 21 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 58999999999999998654
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=92.90 E-value=0.023 Score=51.80 Aligned_cols=20 Identities=35% Similarity=0.534 Sum_probs=15.8
Q ss_pred EEEEEecCCCChHHHHHhhh
Q 047286 507 TVALVGENGNGKSTVISLAE 526 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~ 526 (632)
++++|||+|+||||.+.=|.
T Consensus 13 vi~lvGptGvGKTTTiAKLA 32 (213)
T d1vmaa2 13 VIMVVGVNGTGKTTSCGKLA 32 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 56999999999999654333
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.89 E-value=0.025 Score=49.43 Aligned_cols=20 Identities=30% Similarity=0.383 Sum_probs=17.5
Q ss_pred EEEEEecCCCChHHHHHhhh
Q 047286 507 TVALVGENGNGKSTVISLAE 526 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~ 526 (632)
+|.|||.+|+|||||++-+.
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~ 26 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFI 26 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999998543
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.87 E-value=0.024 Score=51.17 Aligned_cols=20 Identities=30% Similarity=0.604 Sum_probs=18.3
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 047286 95 TVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~ 114 (632)
+++|-|.-||||||+++.|.
T Consensus 2 lI~ieG~dGsGKST~~~~L~ 21 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLS 21 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999999885
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=92.85 E-value=0.023 Score=49.77 Aligned_cols=20 Identities=30% Similarity=0.338 Sum_probs=16.7
Q ss_pred EEEEEecCCCChHHHHHhhh
Q 047286 507 TVALVGENGNGKSTVISLAE 526 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~ 526 (632)
-|.|.|+||+||||++-.|.
T Consensus 17 gvli~G~sg~GKS~la~~l~ 36 (169)
T d1ko7a2 17 GVLITGDSGIGKSETALELI 36 (169)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 58999999999999985433
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.83 E-value=0.024 Score=54.10 Aligned_cols=40 Identities=23% Similarity=0.248 Sum_probs=25.3
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCCcHHhhcceEEEcccC
Q 047286 95 TVALVGQSGSGKSTVINLVESFRFYAPEAEQEKIGLVSKEP 135 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~~~~~~~~~~r~~i~~v~Q~~ 135 (632)
++||-|+.|||||||.+.|.... .........+..++.|.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L-~~~~~~~~~v~~iS~Dd 68 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHL-MEKYGGEKSIGYASIDD 68 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH-HHHHGGGSCEEEEEGGG
T ss_pred EEEeECCCCCCHHHHHHHHHHHH-HHHhCCCcceEeeccCC
Confidence 78999999999999998663110 00000123467777765
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.83 E-value=0.024 Score=49.12 Aligned_cols=20 Identities=15% Similarity=0.306 Sum_probs=17.5
Q ss_pred EEEEEecCCCChHHHHHhhh
Q 047286 507 TVALVGENGNGKSTVISLAE 526 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~ 526 (632)
+|.+||.+|+|||||++-+.
T Consensus 4 Kv~liG~~~vGKTsLl~~~~ 23 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFC 23 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 58999999999999998554
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=92.82 E-value=0.027 Score=52.91 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=20.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHH
Q 047286 92 SGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 92 ~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
.+..+.|.||.|+|||||++-+.
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~ 50 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGI 50 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHH
Confidence 45789999999999999998664
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=92.79 E-value=0.028 Score=51.87 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=22.2
Q ss_pred eeCCCEEEEEcCCCchHHHHHHHH
Q 047286 90 VPSGTTVALVGQSGSGKSTVINLV 113 (632)
Q Consensus 90 i~~Ge~~~ivG~sGsGKSTLl~ll 113 (632)
+++|+++.|.|++|+||||++.-+
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~ 54 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQS 54 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHH
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHH
Confidence 899999999999999999998754
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.78 E-value=0.025 Score=50.09 Aligned_cols=20 Identities=20% Similarity=0.378 Sum_probs=17.3
Q ss_pred EEEEEecCCCChHHHHHhhh
Q 047286 507 TVALVGENGNGKSTVISLAE 526 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~ 526 (632)
+|.|||.+|+|||||++-+.
T Consensus 7 KivviG~~~vGKTsli~~~~ 26 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYT 26 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999997543
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.76 E-value=0.034 Score=48.27 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=18.5
Q ss_pred EEEEEcCCCchHHHHHHHHHh
Q 047286 95 TVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~ 115 (632)
.++++|++|+|||||++-+.+
T Consensus 5 Ki~viG~~~vGKTsli~~l~~ 25 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 389999999999999997764
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.75 E-value=0.026 Score=49.13 Aligned_cols=20 Identities=35% Similarity=0.557 Sum_probs=17.8
Q ss_pred EEEEEecCCCChHHHHHhhh
Q 047286 507 TVALVGENGNGKSTVISLAE 526 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~ 526 (632)
+|+|||.+|+|||||++-+.
T Consensus 6 Ki~lvG~~~vGKTsli~rl~ 25 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFV 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 68999999999999998654
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.74 E-value=0.03 Score=49.04 Aligned_cols=23 Identities=43% Similarity=0.691 Sum_probs=19.8
Q ss_pred EEEEEecCCCChHHHHHhhhcCC
Q 047286 507 TVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
+|.+||.+|+|||||++.+.+-.
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCc
Confidence 68999999999999999776543
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.71 E-value=0.026 Score=56.97 Aligned_cols=22 Identities=45% Similarity=0.741 Sum_probs=19.8
Q ss_pred EEEEcCCCchHHHHHHHHHhCC
Q 047286 96 VALVGQSGSGKSTVINLVESFR 117 (632)
Q Consensus 96 ~~ivG~sGsGKSTLl~ll~~~~ 117 (632)
++|+|.+|+|||||+|.|.|..
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999998643
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.67 E-value=0.027 Score=49.54 Aligned_cols=21 Identities=19% Similarity=0.517 Sum_probs=18.1
Q ss_pred eEEEEEecCCCChHHHHHhhh
Q 047286 506 HTVALVGENGNGKSTVISLAE 526 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~ 526 (632)
.+|.|||.+|+|||||++-+.
T Consensus 3 ~KivvvG~~~vGKTsLi~~~~ 23 (177)
T d1kmqa_ 3 KKLVIVGDGACGKTCLLIVNS 23 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEECCCCcCHHHHHHHHH
Confidence 478999999999999997554
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=92.66 E-value=0.025 Score=52.25 Aligned_cols=21 Identities=24% Similarity=0.464 Sum_probs=19.0
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
+|||+|+..||||||++.|.+
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~ 27 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRG 27 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHh
Confidence 589999999999999998764
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.63 E-value=0.038 Score=47.83 Aligned_cols=19 Identities=32% Similarity=0.485 Sum_probs=17.2
Q ss_pred EEEEcCCCchHHHHHHHHH
Q 047286 96 VALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 96 ~~ivG~sGsGKSTLl~ll~ 114 (632)
++++|++|+|||||++-+.
T Consensus 5 v~liG~~~vGKSsLi~rl~ 23 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYC 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHH
Confidence 7899999999999998665
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.62 E-value=0.028 Score=49.32 Aligned_cols=20 Identities=30% Similarity=0.388 Sum_probs=17.5
Q ss_pred EEEEEecCCCChHHHHHhhh
Q 047286 507 TVALVGENGNGKSTVISLAE 526 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~ 526 (632)
+|.|||.+|+|||||++-+.
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~ 27 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFI 27 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 58999999999999997544
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.58 E-value=0.038 Score=48.39 Aligned_cols=21 Identities=38% Similarity=0.661 Sum_probs=18.4
Q ss_pred EEEEEcCCCchHHHHHHHHHh
Q 047286 95 TVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~ 115 (632)
.++++|+.|+|||||++-+.+
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999997754
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=92.56 E-value=0.021 Score=51.99 Aligned_cols=22 Identities=32% Similarity=0.350 Sum_probs=17.3
Q ss_pred eEEEEEecCCCChHHHHHhhhc
Q 047286 506 HTVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r 527 (632)
+++.+|||+|+||||.+.-|..
T Consensus 11 ~vi~lvGp~GvGKTTTiaKLA~ 32 (207)
T d1ls1a2 11 NLWFLVGLQGSGKTTTAAKLAL 32 (207)
T ss_dssp EEEEEECCTTTTHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3679999999999997654443
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.55 E-value=0.028 Score=53.53 Aligned_cols=22 Identities=32% Similarity=0.329 Sum_probs=20.4
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
+|+|+||.++|||||++.|++-
T Consensus 34 vvsi~G~~~sGKS~llN~l~~~ 55 (277)
T d1f5na2 34 VVAIVGLYRTGKSYLMNKLAGK 55 (277)
T ss_dssp EEEEEEBTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 7899999999999999999874
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=92.52 E-value=0.021 Score=52.71 Aligned_cols=21 Identities=29% Similarity=0.346 Sum_probs=18.7
Q ss_pred EEEEecCCCChHHHHHhhhcC
Q 047286 508 VALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 508 vaIVG~SGsGKSTL~~ll~r~ 528 (632)
+-|.||+|+||||+++++.+-
T Consensus 48 lll~Gp~G~GKTtla~~iak~ 68 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALARE 68 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 579999999999999988763
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.52 E-value=0.027 Score=51.85 Aligned_cols=19 Identities=26% Similarity=0.536 Sum_probs=17.7
Q ss_pred EEEEcCCCchHHHHHHHHH
Q 047286 96 VALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 96 ~~ivG~sGsGKSTLl~ll~ 114 (632)
+.|.||+|+||||++++++
T Consensus 36 lll~Gp~G~GKTtl~~~i~ 54 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALT 54 (237)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHH
Confidence 6799999999999999986
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=92.44 E-value=0.034 Score=52.74 Aligned_cols=47 Identities=17% Similarity=0.162 Sum_probs=31.3
Q ss_pred HHHHHHhccCCCCCCCC---Cc---EEEEeeCCCEEEEEcCCCchHHHHHHHH
Q 047286 67 CKMFETIERIPKINPYD---NR---FLQHVPSGTTVALVGQSGSGKSTVINLV 113 (632)
Q Consensus 67 ~ri~~~~~~~~~~~~~~---~~---~~~~i~~Ge~~~ivG~sGsGKSTLl~ll 113 (632)
+|+.+.++.+....... +. ...=+.+|+++.|.|++|+||||++.-+
T Consensus 3 e~~~~~~~~~~~~~~i~TG~~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~l 55 (277)
T d1cr2a_ 3 ERIREHLSSEESVGLLFSGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQ 55 (277)
T ss_dssp HHHHHHHTSCCCSCBCCCSCTTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHH
T ss_pred HHHHHHHhCCCCccccCCCchhHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHH
Confidence 56667776655432111 01 1123789999999999999999998654
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=92.41 E-value=0.03 Score=49.02 Aligned_cols=20 Identities=25% Similarity=0.566 Sum_probs=18.3
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 047286 95 TVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~ 114 (632)
.++++|+.|+|||||++-+.
T Consensus 18 kI~vvG~~~vGKSsLi~~l~ 37 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLA 37 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47999999999999999885
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.35 E-value=0.041 Score=47.74 Aligned_cols=21 Identities=24% Similarity=0.366 Sum_probs=18.6
Q ss_pred EEEEEcCCCchHHHHHHHHHh
Q 047286 95 TVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~ 115 (632)
.++|+|+.|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999997754
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.35 E-value=0.026 Score=50.81 Aligned_cols=27 Identities=22% Similarity=0.330 Sum_probs=22.3
Q ss_pred cccEEEeeEEEEEecCCCChHHHHHhh
Q 047286 499 RGDIVFEHTVALVGENGNGKSTVISLA 525 (632)
Q Consensus 499 ~g~I~f~~~vaIVG~SGsGKSTL~~ll 525 (632)
.|-+..++.+-|.||+||||||++.-+
T Consensus 17 ~GGi~~G~v~~i~G~~GsGKT~l~l~l 43 (242)
T d1n0wa_ 17 QGGIETGSITEMFGEFRTGKTQICHTL 43 (242)
T ss_dssp TTSEETTSEEEEECCTTSSHHHHHHHH
T ss_pred cCCCcCCEEEEEEeCCCCCHHHHHHHH
Confidence 456777778899999999999997533
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.33 E-value=0.031 Score=48.87 Aligned_cols=20 Identities=25% Similarity=0.459 Sum_probs=17.8
Q ss_pred EEEEEecCCCChHHHHHhhh
Q 047286 507 TVALVGENGNGKSTVISLAE 526 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~ 526 (632)
+|++||..|+|||||++-+.
T Consensus 7 KI~lvG~~~vGKTsll~~~~ 26 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFI 26 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 58999999999999998554
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.32 E-value=0.032 Score=50.78 Aligned_cols=21 Identities=29% Similarity=0.253 Sum_probs=18.4
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
.|+|.|+-||||||++++|..
T Consensus 5 lI~ieG~dGsGKsT~~~~L~~ 25 (209)
T d1nn5a_ 5 LIVLEGVDRAGKSTQSRKLVE 25 (209)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999988764
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.31 E-value=0.03 Score=48.65 Aligned_cols=20 Identities=30% Similarity=0.401 Sum_probs=17.7
Q ss_pred EEEEEecCCCChHHHHHhhh
Q 047286 507 TVALVGENGNGKSTVISLAE 526 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~ 526 (632)
+|.|||.+|+|||||++-+.
T Consensus 5 KivlvG~~~vGKTsLi~r~~ 24 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYC 24 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 68999999999999998554
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.25 E-value=0.031 Score=48.48 Aligned_cols=20 Identities=25% Similarity=0.459 Sum_probs=17.5
Q ss_pred EEEEEecCCCChHHHHHhhh
Q 047286 507 TVALVGENGNGKSTVISLAE 526 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~ 526 (632)
+|.|||.+|+|||||++-+.
T Consensus 6 KivlvG~~~vGKTsli~~~~ 25 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFT 25 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 58999999999999997554
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.23 E-value=0.03 Score=52.22 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=20.0
Q ss_pred EEEEecCCCChHHHHHhhhcCCC
Q 047286 508 VALVGENGNGKSTVISLAERFHN 530 (632)
Q Consensus 508 vaIVG~SGsGKSTL~~ll~r~y~ 530 (632)
+-|.||+|+||||+++++++-+.
T Consensus 55 lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 55 AMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999998543
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.22 E-value=0.044 Score=47.48 Aligned_cols=21 Identities=33% Similarity=0.476 Sum_probs=18.3
Q ss_pred EEEEcCCCchHHHHHHHHHhC
Q 047286 96 VALVGQSGSGKSTVINLVESF 116 (632)
Q Consensus 96 ~~ivG~sGsGKSTLl~ll~~~ 116 (632)
++++|++|+|||||++-+..-
T Consensus 5 i~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999977643
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.22 E-value=0.021 Score=50.06 Aligned_cols=20 Identities=30% Similarity=0.539 Sum_probs=9.4
Q ss_pred EEEEEecCCCChHHHHHhhh
Q 047286 507 TVALVGENGNGKSTVISLAE 526 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~ 526 (632)
+|.+||.+|+|||||++-+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~ 27 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFS 27 (173)
T ss_dssp EEEEECCCCC----------
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 58999999999999997444
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=92.20 E-value=0.032 Score=51.61 Aligned_cols=20 Identities=35% Similarity=0.654 Sum_probs=18.0
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 047286 95 TVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~ 114 (632)
.+.+.||+|+||||+.+++.
T Consensus 37 ~~L~~GPpGtGKT~lA~~la 56 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIA 56 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHH
Confidence 36789999999999999986
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=92.18 E-value=0.032 Score=54.12 Aligned_cols=21 Identities=19% Similarity=0.561 Sum_probs=18.4
Q ss_pred CEEEEEcCCCchHHHHHHHHH
Q 047286 94 TTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 94 e~~~ivG~sGsGKSTLl~ll~ 114 (632)
.-+.++||+|+|||+|.+.|.
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA 70 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLA 70 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHh
Confidence 345689999999999999996
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.17 E-value=0.034 Score=48.48 Aligned_cols=20 Identities=30% Similarity=0.453 Sum_probs=17.9
Q ss_pred EEEEEecCCCChHHHHHhhh
Q 047286 507 TVALVGENGNGKSTVISLAE 526 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~ 526 (632)
+|.+||.+|+|||||++-+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~ 27 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFV 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 78999999999999997555
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.15 E-value=0.029 Score=51.69 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=19.0
Q ss_pred EEEEecCCCChHHHHHhhhcC
Q 047286 508 VALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 508 vaIVG~SGsGKSTL~~ll~r~ 528 (632)
+-|.||+|+||||+++++++-
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 579999999999999999874
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.15 E-value=0.034 Score=48.42 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=17.7
Q ss_pred EEEEEecCCCChHHHHHh-hhc
Q 047286 507 TVALVGENGNGKSTVISL-AER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~l-l~r 527 (632)
++++||..|+|||||++- +.+
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 589999999999999984 444
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.14 E-value=0.035 Score=49.65 Aligned_cols=20 Identities=30% Similarity=0.506 Sum_probs=17.7
Q ss_pred EEEEEecCCCChHHHHHhhh
Q 047286 507 TVALVGENGNGKSTVISLAE 526 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~ 526 (632)
+|+|||+.|+|||||++-+.
T Consensus 8 KivvvG~~~vGKTsli~~l~ 27 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFS 27 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHh
Confidence 59999999999999998554
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=92.13 E-value=0.032 Score=56.29 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=21.2
Q ss_pred eCCCEEEEEcCCCchHHHHHHHHH
Q 047286 91 PSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 91 ~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
.++..+.+.||+||||||++..+.
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l 179 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGL 179 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHH
T ss_pred hhhceEEEEcCCCCCccHHHHHHh
Confidence 467789999999999999999765
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=92.11 E-value=0.035 Score=48.40 Aligned_cols=20 Identities=35% Similarity=0.439 Sum_probs=17.9
Q ss_pred EEEEEecCCCChHHHHHhhh
Q 047286 507 TVALVGENGNGKSTVISLAE 526 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~ 526 (632)
+|.+||.+|+|||||++-+.
T Consensus 6 KivlvG~~~vGKTsli~~~~ 25 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFM 25 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 68999999999999998654
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=92.10 E-value=0.033 Score=52.27 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=18.6
Q ss_pred eEEEEEecCCCChHHHHHhhhc
Q 047286 506 HTVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 506 ~~vaIVG~SGsGKSTL~~ll~r 527 (632)
..+.|+||+|+|||||++-+.+
T Consensus 30 ~~i~i~G~~G~GKTsLl~~~~~ 51 (283)
T d2fnaa2 30 PITLVLGLRRTGKSSIIKIGIN 51 (283)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCcHHHHHHHHHH
Confidence 4679999999999999986553
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=92.10 E-value=0.031 Score=54.55 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=19.1
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
++||.|+.|+|||||+.-|.+.
T Consensus 53 ~igitG~pGaGKSTli~~l~~~ 74 (323)
T d2qm8a1 53 RVGITGVPGVGKSTTIDALGSL 74 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEeeeCCCCCCHHHHHHHHHHH
Confidence 6799999999999999876653
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=92.10 E-value=0.038 Score=48.65 Aligned_cols=24 Identities=33% Similarity=0.351 Sum_probs=20.1
Q ss_pred eCCCEEEEEcCCCchHHHHHHHHH
Q 047286 91 PSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 91 ~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
-.|.-+.|.|+||+|||||.-.+.
T Consensus 12 ~~g~gvl~~G~sG~GKStlal~l~ 35 (176)
T d1kkma_ 12 IYGLGVLITGDSGVGKSETALELV 35 (176)
T ss_dssp ETTEEEEEECCTTSCHHHHHHHHH
T ss_pred ECCEEEEEEeCCCCCHHHHHHHHH
Confidence 467789999999999999987553
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.07 E-value=0.055 Score=54.28 Aligned_cols=44 Identities=11% Similarity=0.185 Sum_probs=38.4
Q ss_pred cCCCCHHHHHHHHHHHHHHhC-CceEEEEecCchHHhhcCeEEEE
Q 047286 186 TNAVDAQSERIVQAAMVKLVT-NQTVVIVANCLITIRNADCIIMV 229 (632)
Q Consensus 186 ts~LD~~~~~~i~~~l~~~~~-~~tviiitH~~~~~~~aD~i~vl 229 (632)
+++||+.....+.+.|.++.. +.-+|++||++..+..||+++.+
T Consensus 364 d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 364 DAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp TTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHhcccEEEE
Confidence 789999999999999988754 44599999999999999997755
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.02 E-value=0.049 Score=47.53 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=18.5
Q ss_pred EEEEEcCCCchHHHHHHHHHhC
Q 047286 95 TVALVGQSGSGKSTVINLVESF 116 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~~ 116 (632)
.++++|++|+|||||++-+..-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 3789999999999999976543
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=92.02 E-value=0.037 Score=48.74 Aligned_cols=23 Identities=39% Similarity=0.395 Sum_probs=20.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHH
Q 047286 92 SGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 92 ~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
.|.-+.|.|+||+|||||...+.
T Consensus 14 ~g~gvli~G~sG~GKS~lal~l~ 36 (177)
T d1knxa2 14 FGVGVLLTGRSGIGKSECALDLI 36 (177)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHH
Confidence 68889999999999999987553
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=92.01 E-value=0.03 Score=51.76 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=20.0
Q ss_pred EEEEecCCCChHHHHHhhhcCCC
Q 047286 508 VALVGENGNGKSTVISLAERFHN 530 (632)
Q Consensus 508 vaIVG~SGsGKSTL~~ll~r~y~ 530 (632)
+-+.||+|+||||++++|..-+.
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~~ 60 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASELQ 60 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHhccC
Confidence 46899999999999999987654
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=92.00 E-value=0.029 Score=56.59 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=18.1
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
.+-|.|||||||||.+..+.+.
T Consensus 160 liLvtGpTGSGKSTTl~~~l~~ 181 (401)
T d1p9ra_ 160 IILVTGPTGSGKSTTLYAGLQE 181 (401)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEcCCCCCccHHHHHHhhh
Confidence 4478999999999999876653
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.99 E-value=0.048 Score=48.17 Aligned_cols=20 Identities=30% Similarity=0.483 Sum_probs=18.1
Q ss_pred EEEEcCCCchHHHHHHHHHh
Q 047286 96 VALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 96 ~~ivG~sGsGKSTLl~ll~~ 115 (632)
++|+|+.|+|||||++-+.+
T Consensus 8 i~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHhc
Confidence 78999999999999998764
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.98 E-value=0.048 Score=47.46 Aligned_cols=21 Identities=24% Similarity=0.610 Sum_probs=18.5
Q ss_pred EEEEEcCCCchHHHHHHHHHh
Q 047286 95 TVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~ 115 (632)
.++|+|+.|+|||||++-+..
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999997764
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.96 E-value=0.037 Score=48.18 Aligned_cols=20 Identities=30% Similarity=0.459 Sum_probs=17.5
Q ss_pred EEEEEecCCCChHHHHHhhh
Q 047286 507 TVALVGENGNGKSTVISLAE 526 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~ 526 (632)
+|.+||.+|+|||||++-+.
T Consensus 4 Ki~lvG~~~vGKTsli~r~~ 23 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFL 23 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999998554
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=91.94 E-value=0.036 Score=54.07 Aligned_cols=40 Identities=30% Similarity=0.519 Sum_probs=28.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCCcHHhhcceEEEcccCc
Q 047286 93 GTTVALVGQSGSGKSTVINLVESFRFYAPEAEQEKIGLVSKEPI 136 (632)
Q Consensus 93 Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~~r~~i~~v~Q~~~ 136 (632)
.-.++|.||.|||||||+..+.. .+ ...-.+++++.-+|.
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~--~~--~~~g~~vaViavDps 90 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGS--LL--TAAGHKVAVLAVDPS 90 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH--HH--HHTTCCEEEEEECGG
T ss_pred ceEEeeeCCCCCCHHHHHHHHHH--HH--hhcCCceeeeecccc
Confidence 35799999999999999987641 10 111246888877764
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.91 E-value=0.051 Score=47.93 Aligned_cols=20 Identities=35% Similarity=0.662 Sum_probs=18.0
Q ss_pred EEEEcCCCchHHHHHHHHHh
Q 047286 96 VALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 96 ~~ivG~sGsGKSTLl~ll~~ 115 (632)
++++|.+|+|||||++-+.+
T Consensus 5 v~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999997764
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=91.84 E-value=0.038 Score=48.28 Aligned_cols=21 Identities=19% Similarity=0.414 Sum_probs=18.5
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
+|.+||++|+|||||++-+..
T Consensus 14 kIvlvG~~~vGKTSli~rl~~ 34 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKL 34 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999987764
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.82 E-value=0.038 Score=48.16 Aligned_cols=19 Identities=37% Similarity=0.609 Sum_probs=17.1
Q ss_pred EEEEEecCCCChHHHHHhh
Q 047286 507 TVALVGENGNGKSTVISLA 525 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll 525 (632)
+++|||+.|+|||||++-+
T Consensus 8 Ki~vvG~~~vGKTsli~~~ 26 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRF 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHH
Confidence 5999999999999999844
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.81 E-value=0.054 Score=47.07 Aligned_cols=21 Identities=33% Similarity=0.499 Sum_probs=18.2
Q ss_pred EEEEEcCCCchHHHHHHHHHh
Q 047286 95 TVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~ 115 (632)
.++++|.+|+|||||++-+.+
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999997653
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.73 E-value=0.056 Score=46.77 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=18.4
Q ss_pred EEEEEcCCCchHHHHHHHHHh
Q 047286 95 TVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~ 115 (632)
.++++|+.|+|||||++-+.+
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~ 25 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999987754
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.71 E-value=0.053 Score=46.72 Aligned_cols=21 Identities=19% Similarity=0.426 Sum_probs=18.4
Q ss_pred EEEEEcCCCchHHHHHHHHHh
Q 047286 95 TVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~ 115 (632)
.++++|..|+|||||++-+.+
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999997754
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.67 E-value=0.055 Score=47.08 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=18.3
Q ss_pred EEEEEcCCCchHHHHHHHHHh
Q 047286 95 TVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~ 115 (632)
.++|+|.+|+|||||++-+..
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999996653
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=91.67 E-value=0.042 Score=49.78 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=18.7
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
.|+|-|+-||||||++++|..
T Consensus 4 fIviEG~dGsGKsT~~~~L~~ 24 (210)
T d4tmka_ 4 YIVIEGLEGAGKTTARNVVVE 24 (210)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999998774
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.61 E-value=0.05 Score=47.50 Aligned_cols=20 Identities=40% Similarity=0.664 Sum_probs=17.7
Q ss_pred EEEEcCCCchHHHHHHHHHh
Q 047286 96 VALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 96 ~~ivG~sGsGKSTLl~ll~~ 115 (632)
++++|++|+|||||++-+..
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 88999999999999986653
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.61 E-value=0.044 Score=48.54 Aligned_cols=20 Identities=20% Similarity=0.386 Sum_probs=17.5
Q ss_pred EEEEEecCCCChHHHHHhhh
Q 047286 507 TVALVGENGNGKSTVISLAE 526 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~ 526 (632)
+|.|||.+|+|||||++-+.
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~ 30 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYA 30 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999997544
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=91.60 E-value=0.036 Score=51.28 Aligned_cols=21 Identities=29% Similarity=0.352 Sum_probs=18.9
Q ss_pred EEEecCCCChHHHHHhhhcCC
Q 047286 509 ALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 509 aIVG~SGsGKSTL~~ll~r~y 529 (632)
-+.||+|+||||+++++.+-+
T Consensus 39 Ll~GPpG~GKTtla~~la~~~ 59 (239)
T d1ixsb2 39 LLFGPPGLGKTTLAHVIAHEL 59 (239)
T ss_dssp EEECCTTSCHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999854
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=91.60 E-value=0.05 Score=51.10 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=20.7
Q ss_pred eeCCCEEEEEcCCCchHHHHHHHHH
Q 047286 90 VPSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 90 i~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
++...-+.+.||+|+|||++++.|+
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~~iA 66 (256)
T d1lv7a_ 42 GKIPKGVLMVGPPGTGKTLLAKAIA 66 (256)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHH
T ss_pred CCCCCeEEeeCCCCCCccHHHHHHH
Confidence 4444568899999999999999997
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.57 E-value=0.06 Score=46.36 Aligned_cols=20 Identities=20% Similarity=0.383 Sum_probs=17.8
Q ss_pred EEEEcCCCchHHHHHHHHHh
Q 047286 96 VALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 96 ~~ivG~sGsGKSTLl~ll~~ 115 (632)
++++|..|+|||||++-+..
T Consensus 5 v~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999997753
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.50 E-value=0.05 Score=47.29 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=18.9
Q ss_pred EEEEEcCCCchHHHHHHHHHhC
Q 047286 95 TVALVGQSGSGKSTVINLVESF 116 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~~ 116 (632)
.++++|++|+|||||++.+.+.
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~ 24 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGV 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCcCHHHHHHHHhCC
Confidence 3789999999999999988643
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.50 E-value=0.042 Score=48.20 Aligned_cols=20 Identities=30% Similarity=0.581 Sum_probs=17.8
Q ss_pred EEEEEecCCCChHHHHHhhh
Q 047286 507 TVALVGENGNGKSTVISLAE 526 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~ 526 (632)
+|.+||..|+|||||++-+.
T Consensus 9 Ki~vvG~~~vGKTsli~~l~ 28 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFT 28 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 58999999999999998654
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.46 E-value=0.058 Score=47.22 Aligned_cols=21 Identities=19% Similarity=0.465 Sum_probs=18.3
Q ss_pred EEEEEcCCCchHHHHHHHHHh
Q 047286 95 TVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~ 115 (632)
.++|+|++|+|||||++-+..
T Consensus 4 KivvvG~~~vGKTsLi~~~~~ 24 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSK 24 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999987754
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.45 E-value=0.044 Score=47.77 Aligned_cols=20 Identities=30% Similarity=0.426 Sum_probs=17.6
Q ss_pred EEEEEecCCCChHHHHHhhh
Q 047286 507 TVALVGENGNGKSTVISLAE 526 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~ 526 (632)
++.+||.+|+|||||++-+.
T Consensus 6 Ki~lvG~~~vGKTsll~~~~ 25 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFF 25 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 58899999999999998654
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=91.41 E-value=0.048 Score=50.16 Aligned_cols=20 Identities=25% Similarity=0.607 Sum_probs=18.6
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 047286 95 TVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~ 114 (632)
++||+|...||||||++.|.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~ 26 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIR 26 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHH
Confidence 59999999999999999885
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.41 E-value=0.048 Score=48.07 Aligned_cols=19 Identities=21% Similarity=0.557 Sum_probs=16.8
Q ss_pred EEEEEecCCCChHHHHHhh
Q 047286 507 TVALVGENGNGKSTVISLA 525 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll 525 (632)
+|.++|.+|+|||||++-+
T Consensus 4 KivliG~~~vGKTsli~r~ 22 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVF 22 (179)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHH
Confidence 6899999999999999744
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=91.41 E-value=0.035 Score=48.99 Aligned_cols=20 Identities=25% Similarity=0.652 Sum_probs=18.0
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 047286 95 TVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~ 114 (632)
.++++|++|+|||||++-+.
T Consensus 19 KI~lvG~~~vGKTsLi~~l~ 38 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQ 38 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47899999999999999874
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=91.38 E-value=0.044 Score=50.61 Aligned_cols=19 Identities=32% Similarity=0.648 Sum_probs=17.6
Q ss_pred EEEEcCCCchHHHHHHHHH
Q 047286 96 VALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 96 ~~ivG~sGsGKSTLl~ll~ 114 (632)
+.+.||.|+||||+++++.
T Consensus 38 ~Ll~GPpG~GKTtla~~la 56 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIA 56 (239)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5689999999999999997
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.38 E-value=0.034 Score=50.95 Aligned_cols=21 Identities=24% Similarity=0.316 Sum_probs=18.2
Q ss_pred EEEEecCCCChHHHHHhhhcC
Q 047286 508 VALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 508 vaIVG~SGsGKSTL~~ll~r~ 528 (632)
+-+.||+|+||||+++++.+-
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~ 59 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHE 59 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCchhhHHHHHHH
Confidence 468999999999999988763
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.23 E-value=0.067 Score=46.28 Aligned_cols=21 Identities=24% Similarity=0.377 Sum_probs=18.1
Q ss_pred EEEEEcCCCchHHHHHHHHHh
Q 047286 95 TVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~ 115 (632)
.++|+|.+|+|||||++-+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 368999999999999997653
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.17 E-value=0.048 Score=47.26 Aligned_cols=20 Identities=25% Similarity=0.405 Sum_probs=17.6
Q ss_pred EEEEEecCCCChHHHHHhhh
Q 047286 507 TVALVGENGNGKSTVISLAE 526 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~ 526 (632)
+|.+||.+|+|||||++-+.
T Consensus 5 KivvvG~~~vGKTsli~r~~ 24 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999998554
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.17 E-value=0.069 Score=46.17 Aligned_cols=21 Identities=24% Similarity=0.504 Sum_probs=18.1
Q ss_pred EEEEEcCCCchHHHHHHHHHh
Q 047286 95 TVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~ 115 (632)
.++|+|.+|+|||||++-+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999987653
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.15 E-value=0.051 Score=52.14 Aligned_cols=22 Identities=32% Similarity=0.392 Sum_probs=20.2
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
.+++||...||||||++.|.|.
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~ 49 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTS
T ss_pred eEEEEcCCCCCHHHHHHHHhCC
Confidence 4789999999999999999985
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.13 E-value=0.054 Score=46.95 Aligned_cols=21 Identities=33% Similarity=0.574 Sum_probs=18.3
Q ss_pred EEEEEcCCCchHHHHHHHHHh
Q 047286 95 TVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~ 115 (632)
.++|+|..|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999997753
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.09 E-value=0.052 Score=49.46 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=19.2
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
.|+|-|+-||||||++++|...
T Consensus 5 ~I~iEG~DGsGKST~~~~L~~~ 26 (214)
T d1tmka_ 5 LILIEGLDRTGKTTQCNILYKK 26 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5799999999999999988743
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=90.95 E-value=0.054 Score=50.09 Aligned_cols=21 Identities=29% Similarity=0.419 Sum_probs=19.2
Q ss_pred CEEEEEcCCCchHHHHHHHHH
Q 047286 94 TTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 94 e~~~ivG~sGsGKSTLl~ll~ 114 (632)
.++||.|+-||||||..+.|.
T Consensus 2 ~iIgiTG~igSGKsTva~~l~ 22 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIM 22 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 478999999999999999984
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.90 E-value=0.04 Score=50.44 Aligned_cols=21 Identities=29% Similarity=0.445 Sum_probs=18.6
Q ss_pred EEEEecCCCChHHHHHhhhcC
Q 047286 508 VALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 508 vaIVG~SGsGKSTL~~ll~r~ 528 (632)
+-+.||+|+||||+++++++-
T Consensus 38 lLl~Gp~G~GKttl~~~la~~ 58 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALARE 58 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCChhHHHHHHHHH
Confidence 458999999999999999874
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=90.89 E-value=0.064 Score=50.01 Aligned_cols=21 Identities=24% Similarity=0.522 Sum_probs=18.9
Q ss_pred CEEEEEcCCCchHHHHHHHHH
Q 047286 94 TTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 94 e~~~ivG~sGsGKSTLl~ll~ 114 (632)
..+.|.||.|+||||+++.+.
T Consensus 44 ~~lll~GppGtGKT~l~~~l~ 64 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLW 64 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHH
Confidence 468899999999999999885
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=90.89 E-value=0.059 Score=51.23 Aligned_cols=28 Identities=14% Similarity=0.288 Sum_probs=24.9
Q ss_pred EEEeeCCCEEEEEcCCCchHHHHHHHHH
Q 047286 87 LQHVPSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 87 ~~~i~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
-+.+-+|+..+|+|++|+|||||+..|.
T Consensus 37 l~PigrGQr~~I~g~~g~GKT~l~~~i~ 64 (289)
T d1xpua3 37 ASPIGRGQRGLIVAPPKAGKTMLLQNIA 64 (289)
T ss_dssp HSCCBTTCEEEEEECSSSSHHHHHHHHH
T ss_pred cccccCCCeeeEeCCCCCCHHHHHHHHH
Confidence 3458899999999999999999998775
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=90.88 E-value=0.051 Score=50.75 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=19.1
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
.|-+.||+|||||++++.|+.-
T Consensus 42 ~vLL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhhc
Confidence 4679999999999999988863
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.86 E-value=0.057 Score=47.98 Aligned_cols=19 Identities=21% Similarity=0.399 Sum_probs=16.7
Q ss_pred EEEEEecCCCChHHHHHhh
Q 047286 507 TVALVGENGNGKSTVISLA 525 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll 525 (632)
+|++||.+|+|||||++-+
T Consensus 5 KvvllG~~~vGKTSli~r~ 23 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISY 23 (191)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHH
Confidence 6899999999999998644
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.86 E-value=0.077 Score=45.99 Aligned_cols=21 Identities=29% Similarity=0.502 Sum_probs=18.1
Q ss_pred EEEEEcCCCchHHHHHHHHHh
Q 047286 95 TVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~ 115 (632)
.++++|..|+|||||++-+.+
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999996653
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.81 E-value=0.055 Score=49.47 Aligned_cols=19 Identities=26% Similarity=0.541 Sum_probs=17.2
Q ss_pred EEEEcCCCchHHHHHHHHH
Q 047286 96 VALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 96 ~~ivG~sGsGKSTLl~ll~ 114 (632)
+.+.||+|+||||+++++.
T Consensus 39 ~ll~Gp~G~GKTt~a~~la 57 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLA 57 (224)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCchhhHHHHH
Confidence 5789999999999999885
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=90.79 E-value=0.053 Score=51.25 Aligned_cols=50 Identities=22% Similarity=0.171 Sum_probs=29.1
Q ss_pred HHHHHHHccCCCCCCCCCCCCC-CCcccccEEEeeEEEEEecCCCChHHHHH
Q 047286 473 ASIFEILESKPKIDWSSKDGMT-PSTVRGDIVFEHTVALVGENGNGKSTVIS 523 (632)
Q Consensus 473 ~ri~~~l~~~~~~~~~~~~~~~-~~~~~g~I~f~~~vaIVG~SGsGKSTL~~ 523 (632)
+++.+.++.+.+...- +.+.+ +...-|-+..++.+.|.|+||+||||++.
T Consensus 3 e~~~~~~~~~~~~~~i-~TG~~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~ 53 (277)
T d1cr2a_ 3 ERIREHLSSEESVGLL-FSGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVR 53 (277)
T ss_dssp HHHHHHHTSCCCSCBC-CCSCTTHHHHHCSBCTTCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHhCCCCcccc-CCCchhHHHHhcCCCCCeEEEEEeCCCCCHHHHHH
Confidence 5677777665443211 11111 11111335556677999999999999864
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.75 E-value=0.081 Score=45.86 Aligned_cols=21 Identities=29% Similarity=0.539 Sum_probs=18.2
Q ss_pred EEEEEcCCCchHHHHHHHHHh
Q 047286 95 TVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~ 115 (632)
.++++|+.|+|||||++-+..
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999997654
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.74 E-value=0.077 Score=46.23 Aligned_cols=21 Identities=29% Similarity=0.411 Sum_probs=18.2
Q ss_pred EEEEEcCCCchHHHHHHHHHh
Q 047286 95 TVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~ 115 (632)
.++|+|..|+|||||++-+..
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999987653
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=90.73 E-value=0.044 Score=55.83 Aligned_cols=23 Identities=22% Similarity=0.528 Sum_probs=20.4
Q ss_pred EEEEecCCCChHHHHHhhhcCCC
Q 047286 508 VALVGENGNGKSTVISLAERFHN 530 (632)
Q Consensus 508 vaIVG~SGsGKSTL~~ll~r~y~ 530 (632)
+-+|||||||||-|++.|.++.+
T Consensus 52 ILliGPTGvGKTlLAr~LAk~l~ 74 (443)
T d1g41a_ 52 ILMIGPTGVGKTEIARRLAKLAN 74 (443)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 36899999999999999999754
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.71 E-value=0.053 Score=47.25 Aligned_cols=20 Identities=35% Similarity=0.604 Sum_probs=17.6
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 047286 95 TVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~ 114 (632)
.++++|++|+|||||++-+.
T Consensus 5 Ki~vvG~~~vGKTsli~~~~ 24 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHL 24 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 47899999999999998664
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=90.66 E-value=0.058 Score=52.35 Aligned_cols=22 Identities=36% Similarity=0.465 Sum_probs=19.8
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
.|||||..-+|||||++.|.+-
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred cEeEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999874
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.64 E-value=0.082 Score=46.22 Aligned_cols=20 Identities=30% Similarity=0.622 Sum_probs=18.2
Q ss_pred EEEEcCCCchHHHHHHHHHh
Q 047286 96 VALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 96 ~~ivG~sGsGKSTLl~ll~~ 115 (632)
++++|..|+|||||++-+.+
T Consensus 10 i~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999997764
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=90.63 E-value=0.054 Score=50.52 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=19.5
Q ss_pred EEEEEecCCCChHHHHHhhhcCC
Q 047286 507 TVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
.+-|.||+|+||||+++.+.+.+
T Consensus 45 ~lll~GppGtGKT~l~~~l~~~l 67 (276)
T d1fnna2 45 RATLLGRPGTGKTVTLRKLWELY 67 (276)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999887653
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=90.60 E-value=0.058 Score=50.33 Aligned_cols=20 Identities=30% Similarity=0.451 Sum_probs=18.3
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 047286 95 TVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~ 114 (632)
-+.+.||+|||||++++.|+
T Consensus 42 ~vLL~GppGtGKT~la~alA 61 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIA 61 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHh
Confidence 47899999999999999996
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.58 E-value=0.059 Score=48.05 Aligned_cols=20 Identities=35% Similarity=0.576 Sum_probs=17.9
Q ss_pred EEEEcCCCchHHHHHHHHHh
Q 047286 96 VALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 96 ~~ivG~sGsGKSTLl~ll~~ 115 (632)
++|+|+.|+|||||++-+..
T Consensus 9 ivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhh
Confidence 88999999999999997653
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.57 E-value=0.083 Score=46.46 Aligned_cols=21 Identities=19% Similarity=0.376 Sum_probs=18.4
Q ss_pred EEEEEcCCCchHHHHHHHHHh
Q 047286 95 TVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~ 115 (632)
.++|+|.+|+|||||++-+..
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999987653
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.55 E-value=0.06 Score=47.90 Aligned_cols=19 Identities=32% Similarity=0.529 Sum_probs=17.3
Q ss_pred EEEEEecCCCChHHHHHhh
Q 047286 507 TVALVGENGNGKSTVISLA 525 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll 525 (632)
++.|+|.+|+|||||++-+
T Consensus 4 KivllG~~~vGKTsll~r~ 22 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQM 22 (200)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999999866
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=90.55 E-value=0.079 Score=49.85 Aligned_cols=24 Identities=38% Similarity=0.583 Sum_probs=21.7
Q ss_pred eeCCCEEEEEcCCCchHHHHHHHH
Q 047286 90 VPSGTTVALVGQSGSGKSTVINLV 113 (632)
Q Consensus 90 i~~Ge~~~ivG~sGsGKSTLl~ll 113 (632)
+++|.++-|.||+|||||||+-.+
T Consensus 51 i~~g~itei~G~~gsGKTtl~l~~ 74 (263)
T d1u94a1 51 LPMGRIVEIYGPESSGKTTLTLQV 74 (263)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHH
T ss_pred ccCceEEEEecCCCcHHHHHHHHH
Confidence 689999999999999999998644
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.52 E-value=0.082 Score=45.99 Aligned_cols=20 Identities=25% Similarity=0.561 Sum_probs=17.9
Q ss_pred EEEEcCCCchHHHHHHHHHh
Q 047286 96 VALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 96 ~~ivG~sGsGKSTLl~ll~~ 115 (632)
++++|..|+|||||++-+..
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 88999999999999997653
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.48 E-value=0.087 Score=45.66 Aligned_cols=21 Identities=29% Similarity=0.466 Sum_probs=18.2
Q ss_pred EEEEEcCCCchHHHHHHHHHh
Q 047286 95 TVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~ 115 (632)
.++++|..|+|||||++-+..
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999997753
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.43 E-value=0.063 Score=49.50 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.0
Q ss_pred EEEEEecCCCChHHHHHhhhcCC
Q 047286 507 TVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
.|+|-|.-||||||++++|...+
T Consensus 4 ~IviEG~~GsGKST~~~~L~~~l 26 (241)
T d2ocpa1 4 RLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 57899999999999999997643
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.39 E-value=0.062 Score=47.19 Aligned_cols=20 Identities=25% Similarity=0.441 Sum_probs=17.3
Q ss_pred EEEEEecCCCChHHHHHhhh
Q 047286 507 TVALVGENGNGKSTVISLAE 526 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~ 526 (632)
+++++|.+|+|||||++-+.
T Consensus 7 ki~vlG~~~vGKTsLi~~~~ 26 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFL 26 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999998443
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.38 E-value=0.068 Score=46.58 Aligned_cols=21 Identities=43% Similarity=0.748 Sum_probs=18.5
Q ss_pred EEEEEcCCCchHHHHHHHHHh
Q 047286 95 TVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~ 115 (632)
.++++|..|+|||||++.+.+
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~ 25 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAG 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998864
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=90.24 E-value=0.052 Score=47.36 Aligned_cols=20 Identities=20% Similarity=0.544 Sum_probs=18.1
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 047286 95 TVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~ 114 (632)
.+.++|++|+|||||++-+.
T Consensus 14 kIvlvG~~~vGKTSli~rl~ 33 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLK 33 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47899999999999999875
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=90.18 E-value=0.065 Score=51.47 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=20.2
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
++||||..-+|||||++.|.+-
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999864
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=90.17 E-value=0.07 Score=51.34 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=20.1
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
.+++||...||||||++.|.|.
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~ 47 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGR 47 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTS
T ss_pred eEEEEeCCCCCHHHHHHHHhCC
Confidence 3689999999999999999985
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.15 E-value=0.067 Score=48.83 Aligned_cols=19 Identities=26% Similarity=0.555 Sum_probs=17.5
Q ss_pred EEEEcCCCchHHHHHHHHH
Q 047286 96 VALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 96 ~~ivG~sGsGKSTLl~ll~ 114 (632)
+.+.||.|+||||++++++
T Consensus 38 lLl~Gp~G~GKttl~~~la 56 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALA 56 (227)
T ss_dssp EEEECSSSSSHHHHHHHHH
T ss_pred EEEECCCCCChhHHHHHHH
Confidence 5689999999999999986
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=90.12 E-value=0.06 Score=50.57 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=19.5
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
.+-+.||+|||||++++.|.+.
T Consensus 47 ~iLL~GppGtGKT~la~~iA~~ 68 (256)
T d1lv7a_ 47 GVLMVGPPGTGKTLLAKAIAGE 68 (256)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEeeCCCCCCccHHHHHHHHH
Confidence 4679999999999999999874
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=90.01 E-value=0.11 Score=45.28 Aligned_cols=24 Identities=33% Similarity=0.356 Sum_probs=19.9
Q ss_pred eeCCCEEEEEcCCCchHHHHHHHH
Q 047286 90 VPSGTTVALVGQSGSGKSTVINLV 113 (632)
Q Consensus 90 i~~Ge~~~ivG~sGsGKSTLl~ll 113 (632)
.-.|.=+.|.|+||+|||||.-.+
T Consensus 12 ~~~g~gvli~G~sg~GKS~la~~l 35 (169)
T d1ko7a2 12 DVYGVGVLITGDSGIGKSETALEL 35 (169)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHH
T ss_pred EECCEEEEEEeCCCCCHHHHHHHH
Confidence 346788999999999999988544
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=90.01 E-value=0.067 Score=47.77 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=20.1
Q ss_pred EEEEEecCCCChHHHHHhhhcCC
Q 047286 507 TVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
.|||+|...+|||||++.|.+.+
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEEeccCCcHHHHHHHHHhhh
Confidence 37999999999999999997643
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=89.93 E-value=0.067 Score=48.33 Aligned_cols=19 Identities=26% Similarity=0.447 Sum_probs=17.5
Q ss_pred EEEEecCCCChHHHHHhhh
Q 047286 508 VALVGENGNGKSTVISLAE 526 (632)
Q Consensus 508 vaIVG~SGsGKSTL~~ll~ 526 (632)
|||+|+.++|||||+..|.
T Consensus 6 i~iiGhvd~GKSTL~~~Ll 24 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALT 24 (204)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHH
Confidence 7999999999999998775
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.85 E-value=0.069 Score=49.22 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=19.3
Q ss_pred CEEEEEcCCCchHHHHHHHHH
Q 047286 94 TTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 94 e~~~ivG~sGsGKSTLl~ll~ 114 (632)
++++|=|+-||||||+++.|.
T Consensus 3 k~IviEG~~GsGKST~~~~L~ 23 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLT 23 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHH
Confidence 478999999999999999996
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.84 E-value=0.079 Score=49.94 Aligned_cols=25 Identities=20% Similarity=0.425 Sum_probs=21.0
Q ss_pred eeCCCEEEEEcCCCchHHHHHHHHH
Q 047286 90 VPSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 90 i~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
+++..-+.+.||+|+|||+|++.++
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala 62 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIA 62 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCcchhHHHHHH
Confidence 3444568899999999999999997
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.84 E-value=0.11 Score=45.05 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=18.1
Q ss_pred EEEEEcCCCchHHHHHHHHHh
Q 047286 95 TVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~ 115 (632)
.++++|..|+|||||++-+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 368999999999999997654
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.80 E-value=0.078 Score=47.07 Aligned_cols=20 Identities=35% Similarity=0.577 Sum_probs=17.7
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 047286 95 TVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~ 114 (632)
.+.|+|.+|+|||||++-+.
T Consensus 4 KivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47899999999999999774
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=89.79 E-value=0.065 Score=49.54 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=22.8
Q ss_pred ccccEEEeeEEEEEecCCCChHHHHH
Q 047286 498 VRGDIVFEHTVALVGENGNGKSTVIS 523 (632)
Q Consensus 498 ~~g~I~f~~~vaIVG~SGsGKSTL~~ 523 (632)
+.|-+..+..+-|.||+||||||++.
T Consensus 29 l~GGlp~G~~~li~G~pGsGKT~~~l 54 (254)
T d1pzna2 29 LGGGIETQAITEVFGEFGSGKTQLAH 54 (254)
T ss_dssp HTSSEESSEEEEEEESTTSSHHHHHH
T ss_pred hcCCccCCEEEEEEcCCCCCHHHHHH
Confidence 35678888999999999999999874
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.76 E-value=0.063 Score=49.75 Aligned_cols=19 Identities=32% Similarity=0.419 Sum_probs=17.4
Q ss_pred EEEEcCCCchHHHHHHHHH
Q 047286 96 VALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 96 ~~ivG~sGsGKSTLl~ll~ 114 (632)
+.|.||.|+||||+++.++
T Consensus 36 lll~Gp~G~GKTt~~~~la 54 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALL 54 (252)
T ss_dssp EEEECSTTSSHHHHHHTHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6799999999999999875
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.72 E-value=0.064 Score=49.72 Aligned_cols=21 Identities=33% Similarity=0.332 Sum_probs=18.5
Q ss_pred EEEEecCCCChHHHHHhhhcC
Q 047286 508 VALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 508 vaIVG~SGsGKSTL~~ll~r~ 528 (632)
+-|.||.|+||||+++.+++-
T Consensus 36 lll~Gp~G~GKTt~~~~la~~ 56 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLES 56 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 469999999999999988763
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=89.67 E-value=0.11 Score=44.96 Aligned_cols=21 Identities=33% Similarity=0.431 Sum_probs=18.4
Q ss_pred EEEEEcCCCchHHHHHHHHHh
Q 047286 95 TVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~ 115 (632)
.++++|..|+|||||++-+..
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999997653
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=89.59 E-value=0.097 Score=48.76 Aligned_cols=20 Identities=40% Similarity=0.591 Sum_probs=18.4
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 047286 95 TVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~ 114 (632)
-+.+.||+|+|||+|++.+.
T Consensus 44 giLl~GppGtGKT~la~aia 63 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVA 63 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEecCCCCChhHHHHHHH
Confidence 47899999999999999997
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.57 E-value=0.11 Score=45.75 Aligned_cols=21 Identities=19% Similarity=0.378 Sum_probs=18.2
Q ss_pred EEEEEcCCCchHHHHHHHHHh
Q 047286 95 TVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~ 115 (632)
.++|+|..|+|||||++-+..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 389999999999999987653
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=89.45 E-value=0.073 Score=49.64 Aligned_cols=22 Identities=32% Similarity=0.368 Sum_probs=19.4
Q ss_pred EEEEecCCCChHHHHHhhhcCC
Q 047286 508 VALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 508 vaIVG~SGsGKSTL~~ll~r~y 529 (632)
+-+.||+|+|||++++.+.+..
T Consensus 45 iLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEecCCCCChhHHHHHHHHHc
Confidence 5789999999999999998754
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.39 E-value=0.12 Score=44.54 Aligned_cols=21 Identities=24% Similarity=0.426 Sum_probs=18.2
Q ss_pred EEEEEcCCCchHHHHHHHHHh
Q 047286 95 TVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~ 115 (632)
.++++|.+|+|||||++-+..
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 378999999999999997653
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.24 E-value=0.13 Score=44.97 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=18.3
Q ss_pred EEEEEcCCCchHHHHHHHHHh
Q 047286 95 TVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~ 115 (632)
.++++|+.|+|||||++-+.+
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~ 27 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLT 27 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999996654
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.23 E-value=0.094 Score=45.43 Aligned_cols=20 Identities=40% Similarity=0.630 Sum_probs=17.7
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 047286 95 TVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~ 114 (632)
.++++|+.|+|||||++-+.
T Consensus 8 Ki~vvG~~~vGKTsli~~~~ 27 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFK 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 38999999999999999664
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=89.18 E-value=0.084 Score=49.96 Aligned_cols=20 Identities=15% Similarity=0.210 Sum_probs=17.7
Q ss_pred EEEEEecCCCChHHHHHhhh
Q 047286 507 TVALVGENGNGKSTVISLAE 526 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~ 526 (632)
.|||||+.|||||||+..|.
T Consensus 8 ni~i~gh~~~GKTtL~e~ll 27 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERIL 27 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 57999999999999997664
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.05 E-value=0.072 Score=48.82 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=21.6
Q ss_pred cccEEEeeEEEEEecCCCChHHHHH
Q 047286 499 RGDIVFEHTVALVGENGNGKSTVIS 523 (632)
Q Consensus 499 ~g~I~f~~~vaIVG~SGsGKSTL~~ 523 (632)
.|-+.-+..+-|.||+||||||++.
T Consensus 28 ~GGi~~G~~~li~G~pGsGKT~l~l 52 (251)
T d1szpa2 28 GGGVETGSITELFGEFRTGKSQLCH 52 (251)
T ss_dssp TSSEESSSEEEEEESTTSSHHHHHH
T ss_pred CCCCcCCeEEEEEcCCCCCHHHHHH
Confidence 4667777788999999999999985
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.97 E-value=0.13 Score=45.15 Aligned_cols=20 Identities=25% Similarity=0.615 Sum_probs=17.5
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 047286 95 TVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~ 114 (632)
.++++|.+|+|||||++-+.
T Consensus 4 KivliG~~~vGKTsli~r~~ 23 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFA 23 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 47899999999999998664
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=88.94 E-value=0.098 Score=46.62 Aligned_cols=20 Identities=25% Similarity=0.554 Sum_probs=18.6
Q ss_pred EEEEcCCCchHHHHHHHHHh
Q 047286 96 VALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 96 ~~ivG~sGsGKSTLl~ll~~ 115 (632)
+||+|...+|||||++.|.+
T Consensus 8 IaiiGhvd~GKSTL~~~L~g 27 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTG 27 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHT
T ss_pred EEEEeccCCcHHHHHHHHHh
Confidence 69999999999999999974
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.78 E-value=0.069 Score=46.54 Aligned_cols=19 Identities=37% Similarity=0.615 Sum_probs=8.6
Q ss_pred EEEEcCCCchHHHHHHHHH
Q 047286 96 VALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 96 ~~ivG~sGsGKSTLl~ll~ 114 (632)
++++|..|+|||||++.+.
T Consensus 9 i~vvG~~~vGKTsLi~~l~ 27 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFS 27 (173)
T ss_dssp EEEECCCCC----------
T ss_pred EEEECCCCcCHHHHHHHHH
Confidence 7899999999999998665
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=88.77 E-value=0.094 Score=49.40 Aligned_cols=20 Identities=50% Similarity=0.665 Sum_probs=17.9
Q ss_pred EEEEEecCCCChHHHHHhhh
Q 047286 507 TVALVGENGNGKSTVISLAE 526 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~ 526 (632)
.|||+|+.|||||||+..|.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHH
Confidence 47999999999999998774
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.74 E-value=0.12 Score=48.43 Aligned_cols=20 Identities=30% Similarity=0.557 Sum_probs=18.3
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 047286 95 TVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~ 114 (632)
-+.+.||+|+|||++++.+.
T Consensus 40 giLL~GppGtGKT~l~~ala 59 (258)
T d1e32a2 40 GILLYGPPGTGKTLIARAVA 59 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eeEEecCCCCCchHHHHHHH
Confidence 37899999999999999997
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=88.71 E-value=0.1 Score=47.56 Aligned_cols=20 Identities=35% Similarity=0.606 Sum_probs=17.6
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 047286 95 TVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~ 114 (632)
.+.++|.+|+|||||++-+.
T Consensus 8 KilllG~~~vGKTsll~~~~ 27 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMR 27 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57899999999999998663
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.66 E-value=0.088 Score=49.93 Aligned_cols=23 Identities=35% Similarity=0.445 Sum_probs=20.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhC
Q 047286 94 TTVALVGQSGSGKSTVINLVESF 116 (632)
Q Consensus 94 e~~~ivG~sGsGKSTLl~ll~~~ 116 (632)
-+++|+||-++|||||+|.|.+.
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~ 55 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGK 55 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTC
T ss_pred EEEEEECCCCCCHHHHHHHHcCC
Confidence 37999999999999999998643
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=88.61 E-value=0.073 Score=49.89 Aligned_cols=20 Identities=25% Similarity=0.458 Sum_probs=17.2
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 047286 95 TVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~ 114 (632)
++.+.||.|+||||+++.+.
T Consensus 48 ~l~l~GppGtGKT~l~~~l~ 67 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTV 67 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHH
Confidence 45667999999999999875
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.58 E-value=0.14 Score=45.34 Aligned_cols=21 Identities=19% Similarity=0.376 Sum_probs=18.0
Q ss_pred EEEEEcCCCchHHHHHHHHHh
Q 047286 95 TVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~ 115 (632)
.++++|+.|+|||||++-+..
T Consensus 5 KvvllG~~~vGKTSli~r~~~ 25 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTT 25 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999986653
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=88.36 E-value=0.064 Score=50.32 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=18.5
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
.+.|+||+|+||||+++.+.+-
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~ 69 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKR 69 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHH
Confidence 3467799999999999988864
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=88.36 E-value=0.11 Score=47.42 Aligned_cols=19 Identities=32% Similarity=0.559 Sum_probs=17.2
Q ss_pred EEEEEecCCCChHHHHHhh
Q 047286 507 TVALVGENGNGKSTVISLA 525 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll 525 (632)
+|.++|.+|+|||||++-+
T Consensus 8 KilllG~~~vGKTsll~~~ 26 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQM 26 (221)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999998755
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.10 E-value=0.11 Score=45.70 Aligned_cols=19 Identities=32% Similarity=0.564 Sum_probs=16.9
Q ss_pred EEEEEecCCCChHHHHHhh
Q 047286 507 TVALVGENGNGKSTVISLA 525 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll 525 (632)
++.+||..|+|||||++-+
T Consensus 4 KivllG~~~vGKTsl~~r~ 22 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQM 22 (195)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999998744
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=88.02 E-value=0.11 Score=49.23 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=20.3
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
+|||||-.-+|||||++.|.+-
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHCC
Confidence 6899999999999999999864
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.95 E-value=0.13 Score=49.19 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=21.1
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCC
Q 047286 95 TVALVGQSGSGKSTVINLVESFRF 118 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~~~~ 118 (632)
.++++|.-.||||||+|.|.|..+
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~~ 51 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRDF 51 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCCc
Confidence 488999999999999999987654
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=87.87 E-value=0.091 Score=50.87 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=19.6
Q ss_pred EEEEecCCCChHHHHHhhhcCC
Q 047286 508 VALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 508 vaIVG~SGsGKSTL~~ll~r~y 529 (632)
+-++||||+|||.|++.|.+.+
T Consensus 55 ~lf~Gp~GvGKT~lak~la~~l 76 (315)
T d1r6bx3 55 FLFAGPTGVGKTEVTVQLSKAL 76 (315)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCcchhHHHHHHHHhhc
Confidence 4789999999999999998864
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=87.82 E-value=0.12 Score=47.20 Aligned_cols=28 Identities=18% Similarity=0.412 Sum_probs=23.0
Q ss_pred ccccEEEeeEEEEEecCCCChHHHHHhh
Q 047286 498 VRGDIVFEHTVALVGENGNGKSTVISLA 525 (632)
Q Consensus 498 ~~g~I~f~~~vaIVG~SGsGKSTL~~ll 525 (632)
+.|-+..++.+-|.|++|+||||++.-+
T Consensus 27 l~GGl~~G~l~~i~G~~G~GKT~~~l~~ 54 (258)
T d2i1qa2 27 LGGGLESQSVTEFAGVFGSGKTQIMHQS 54 (258)
T ss_dssp TTSSEETTEEEEEEESTTSSHHHHHHHH
T ss_pred cCCCccCCeEEEEEeCCCCCHHHHHHHH
Confidence 3466888888999999999999997533
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=87.77 E-value=0.12 Score=46.52 Aligned_cols=19 Identities=26% Similarity=0.485 Sum_probs=17.3
Q ss_pred EEEEcCCCchHHHHHHHHH
Q 047286 96 VALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 96 ~~ivG~sGsGKSTLl~ll~ 114 (632)
++|+|..++|||||++.|.
T Consensus 6 i~iiGhvd~GKSTL~~~Ll 24 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALT 24 (204)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHH
Confidence 7999999999999999773
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.51 E-value=0.1 Score=48.01 Aligned_cols=27 Identities=22% Similarity=0.196 Sum_probs=22.8
Q ss_pred cccEEEeeEEEEEecCCCChHHHHHhh
Q 047286 499 RGDIVFEHTVALVGENGNGKSTVISLA 525 (632)
Q Consensus 499 ~g~I~f~~~vaIVG~SGsGKSTL~~ll 525 (632)
.|-|..+..+-|.|++||||||++.-+
T Consensus 31 gGGip~G~~~~i~G~~GsGKT~lalq~ 57 (258)
T d1v5wa_ 31 GGGIESMAITEAFGEFRTGKTQLSHTL 57 (258)
T ss_dssp TSSBCSSEEEEEECCTTCTHHHHHHHH
T ss_pred cCCCcCCEEEEEECCCCCCHHHHHHHH
Confidence 466888888899999999999998644
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.49 E-value=0.12 Score=48.49 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=18.9
Q ss_pred EEEEecCCCChHHHHHhhhcC
Q 047286 508 VALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 508 vaIVG~SGsGKSTL~~ll~r~ 528 (632)
+-+.||+|||||++++.+.+.
T Consensus 41 iLL~GppGtGKT~l~~ala~~ 61 (258)
T d1e32a2 41 ILLYGPPGTGKTLIARAVANE 61 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred eEEecCCCCCchHHHHHHHHH
Confidence 468999999999999999884
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.43 E-value=0.16 Score=47.69 Aligned_cols=24 Identities=33% Similarity=0.573 Sum_probs=21.7
Q ss_pred eeCCCEEEEEcCCCchHHHHHHHH
Q 047286 90 VPSGTTVALVGQSGSGKSTVINLV 113 (632)
Q Consensus 90 i~~Ge~~~ivG~sGsGKSTLl~ll 113 (632)
++.|.++-|.||+|||||||+-.+
T Consensus 57 ~~~g~i~e~~G~~~~GKT~l~l~~ 80 (269)
T d1mo6a1 57 LPRGRVIEIYGPESSGKTTVALHA 80 (269)
T ss_dssp BCSSSEEEEECSSSSSHHHHHHHH
T ss_pred cccceeEEEecCCCcHHHHHHHHH
Confidence 789999999999999999997544
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=87.39 E-value=0.13 Score=48.77 Aligned_cols=21 Identities=38% Similarity=0.442 Sum_probs=18.5
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
+++|+|..|.|||||++.+.+
T Consensus 46 ~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 46 FLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999987643
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.38 E-value=0.11 Score=48.99 Aligned_cols=23 Identities=22% Similarity=0.237 Sum_probs=20.0
Q ss_pred EEEEEecCCCChHHHHHhhhcCC
Q 047286 507 TVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
.+-+.||+|+|||++++.+++.+
T Consensus 43 giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 43 GVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp EEEEBCCTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCcchhHHHHHHHHh
Confidence 36799999999999999998854
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=87.37 E-value=0.16 Score=48.69 Aligned_cols=24 Identities=33% Similarity=0.566 Sum_probs=21.1
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCC
Q 047286 95 TVALVGQSGSGKSTVINLVESFRF 118 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~~~~ 118 (632)
.++++|.-.||||||++.|.|...
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~~ 49 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRDF 49 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999987654
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=87.35 E-value=0.17 Score=47.49 Aligned_cols=25 Identities=24% Similarity=0.497 Sum_probs=22.5
Q ss_pred eeCCCEEEEEcCCCchHHHHHHHHH
Q 047286 90 VPSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 90 i~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
++.|.++-|-||+|||||||+-.++
T Consensus 54 ip~g~itei~G~~~sGKT~l~l~~~ 78 (268)
T d1xp8a1 54 IPRGRITEIYGPESGGKTTLALAIV 78 (268)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred ccCceEEEEecCCccchHHHHHHHH
Confidence 6899999999999999999987554
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=87.21 E-value=0.12 Score=42.83 Aligned_cols=20 Identities=35% Similarity=0.403 Sum_probs=15.9
Q ss_pred EEEEEecCCCChHHHHHhhh
Q 047286 507 TVALVGENGNGKSTVISLAE 526 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~ 526 (632)
..-|++|||||||+++-.+.
T Consensus 10 ~~ll~apTGsGKT~~~~~~~ 29 (136)
T d1a1va1 10 VAHLHAPTGSGKSTKVPAAY 29 (136)
T ss_dssp EEEEECCTTSCTTTHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 44789999999999886443
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=87.14 E-value=0.14 Score=46.87 Aligned_cols=26 Identities=23% Similarity=0.480 Sum_probs=21.9
Q ss_pred ccccEEEeeEEEEEecCCCChHHHHH
Q 047286 498 VRGDIVFEHTVALVGENGNGKSTVIS 523 (632)
Q Consensus 498 ~~g~I~f~~~vaIVG~SGsGKSTL~~ 523 (632)
+.|-+..+..+-|.|++||||||++.
T Consensus 19 l~GGi~~gsl~li~G~pGsGKT~l~~ 44 (242)
T d1tf7a2 19 CGGGFFKDSIILATGATGTGKTLLVS 44 (242)
T ss_dssp TTSSEESSCEEEEEECTTSSHHHHHH
T ss_pred hcCCCcCCeEEEEEeCCCCCHHHHHH
Confidence 34667777788999999999999984
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=87.11 E-value=0.13 Score=48.39 Aligned_cols=20 Identities=55% Similarity=0.785 Sum_probs=17.8
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 047286 95 TVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~ 114 (632)
-++|+|+.|||||||+..|.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHH
Confidence 47999999999999999773
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=86.81 E-value=0.13 Score=50.89 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=19.3
Q ss_pred EEEecCCCChHHHHHhhhcCCC
Q 047286 509 ALVGENGNGKSTVISLAERFHN 530 (632)
Q Consensus 509 aIVG~SGsGKSTL~~ll~r~y~ 530 (632)
-++||||+|||-|++.|.++.+
T Consensus 72 LfiGPTGvGKTElAk~LA~~~~ 93 (364)
T d1um8a_ 72 LLIGPTGSGKTLMAQTLAKHLD 93 (364)
T ss_dssp EEECCTTSSHHHHHHHHHHHTT
T ss_pred eeeCCCCccHHHHHHHHHhhcc
Confidence 5799999999999999988753
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.64 E-value=0.15 Score=44.73 Aligned_cols=20 Identities=35% Similarity=0.624 Sum_probs=17.4
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 047286 95 TVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~ 114 (632)
.+.++|..|+|||||++-+.
T Consensus 4 KivllG~~~vGKTsl~~r~~ 23 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMK 23 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47899999999999998654
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=86.64 E-value=0.17 Score=49.83 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=22.4
Q ss_pred eeCCCEEEEEcCCCchHHHHHHHHH
Q 047286 90 VPSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 90 i~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
++++..+.+.||.|+||||+.+.|.
T Consensus 151 ~~~~~~~~~~g~~~~gk~~~~~~~~ 175 (362)
T d1svma_ 151 IPKKRYWLFKGPIDSGKTTLAAALL 175 (362)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHH
T ss_pred CCCcCeEEEECCCCCCHHHHHHHHH
Confidence 4667799999999999999999886
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=86.46 E-value=0.17 Score=48.84 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=18.9
Q ss_pred CEEEEEcCCCchHHHHHHHHH
Q 047286 94 TTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 94 e~~~ivG~sGsGKSTLl~ll~ 114 (632)
..+.++||+|+|||.|.+.|.
T Consensus 53 ~~~lf~Gp~GvGKT~lak~la 73 (315)
T d1r6bx3 53 GSFLFAGPTGVGKTEVTVQLS 73 (315)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCcchhHHHHHHHH
Confidence 357899999999999999997
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=86.39 E-value=0.86 Score=40.34 Aligned_cols=105 Identities=14% Similarity=0.097 Sum_probs=57.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCCcHHhhcceEEEcccCcccccccccccccccCCCCCCHHHHHHHHHHccchhh
Q 047286 93 GTTVALVGQSGSGKSTVINLVESFRFYAPEAEQEKIGLVSKEPIFLFCDFNEGQYIPYGKQNASDEHIRPAVQLANAEKS 172 (632)
Q Consensus 93 Ge~~~ivG~sGsGKSTLl~ll~~~~~~~~~~~r~~i~~v~Q~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~ 172 (632)
+..+.+.||+|+||||+.+.+... ... +-++.|. +.. +.-.......+++++..+.+.....
T Consensus 15 ~~~~l~~G~~g~gk~~~a~~l~~~-------i~~---~~~~h~D-----~~~---i~~~~~~I~Id~IR~i~~~~~~~~~ 76 (198)
T d2gnoa2 15 GISILINGEDLSYPREVSLELPEY-------VEK---FPPKASD-----VLE---IDPEGENIGIDDIRTIKDFLNYSPE 76 (198)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHH-------HHT---SCCCTTT-----EEE---ECCSSSCBCHHHHHHHHHHHTSCCS
T ss_pred CceEEEECCCCCCHHHHHHHHHHH-------Hhc---cccCCCC-----EEE---EeCCcCCCCHHHHHHHHHHHhhCcc
Confidence 346788999999999999987521 000 0001111 110 1111112356777776655433211
Q ss_pred HhhCCccccccc--ccCCCCHHHHHHHHHHHHHHhCCceEEEEecCchH
Q 047286 173 IDKLPLGLDTVV--ATNAVDAQSERIVQAAMVKLVTNQTVVIVANCLIT 219 (632)
Q Consensus 173 i~~l~~g~~~~v--~ts~LD~~~~~~i~~~l~~~~~~~tviiitH~~~~ 219 (632)
.++.+-.+ ..-.|...+...+.+.|.+-.++...|++|++.+.
T Consensus 77 ----~~~~KviIId~ad~l~~~aqNaLLK~LEEPp~~t~fiLit~~~~~ 121 (198)
T d2gnoa2 77 ----LYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHY 121 (198)
T ss_dssp ----SSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGG
T ss_pred ----cCCCEEEEEeCccccchhhhhHHHHHHhCCCCCceeeeccCChhh
Confidence 12222222 13456667777777777765556778888887654
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=86.27 E-value=0.15 Score=46.16 Aligned_cols=26 Identities=19% Similarity=0.389 Sum_probs=22.1
Q ss_pred ccccEEEeeEEEEEecCCCChHHHHH
Q 047286 498 VRGDIVFEHTVALVGENGNGKSTVIS 523 (632)
Q Consensus 498 ~~g~I~f~~~vaIVG~SGsGKSTL~~ 523 (632)
+.|-+..+..+-|.|++|+||||++.
T Consensus 19 l~GGi~~G~~~~I~G~~G~GKT~la~ 44 (242)
T d1tf7a1 19 SHGGLPIGRSTLVSGTSGTGKTLFSI 44 (242)
T ss_dssp TTSSEETTSEEEEEESTTSSHHHHHH
T ss_pred hcCCCcCCeEEEEEeCCCCCHHHHHH
Confidence 34668888888999999999999973
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=86.20 E-value=0.16 Score=47.85 Aligned_cols=19 Identities=16% Similarity=0.406 Sum_probs=17.4
Q ss_pred EEEEEcCCCchHHHHHHHH
Q 047286 95 TVALVGQSGSGKSTVINLV 113 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll 113 (632)
-++|+|+.|||||||+..|
T Consensus 8 ni~i~gh~~~GKTtL~e~l 26 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERI 26 (276)
T ss_dssp EEEEEECTTSCHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHH
Confidence 4899999999999999866
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.14 E-value=0.18 Score=44.40 Aligned_cols=20 Identities=35% Similarity=0.506 Sum_probs=17.6
Q ss_pred EEEEEecCCCChHHHHHhhh
Q 047286 507 TVALVGENGNGKSTVISLAE 526 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~ 526 (632)
++.++|.+|+|||||++-+.
T Consensus 4 Kiv~lG~~~vGKTsll~r~~ 23 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMR 23 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999998654
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.85 E-value=0.17 Score=47.61 Aligned_cols=29 Identities=28% Similarity=0.470 Sum_probs=25.1
Q ss_pred EEEEeeCCCEEEEEcCCCchHHHHHHHHH
Q 047286 86 FLQHVPSGTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 86 ~~~~i~~Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
..+.+-+|+..+|+|++|+|||||+..+.
T Consensus 61 ~l~pigkGQr~~If~~~g~GKt~l~~~i~ 89 (276)
T d2jdid3 61 LLAPYAKGGKIGLFGGAGVGKTVLIMELI 89 (276)
T ss_dssp HHSCEETTCEEEEEECTTSSHHHHHHHHH
T ss_pred eeccccCCCEEEeeCCCCCCHHHHHHHHH
Confidence 44578899999999999999999987664
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=85.82 E-value=0.17 Score=45.31 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=19.3
Q ss_pred EEEEecCCCChHHHHHhhhcCC
Q 047286 508 VALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 508 vaIVG~SGsGKSTL~~ll~r~y 529 (632)
|||+|.-.+|||||+..|.+..
T Consensus 11 i~iiGhVd~GKSTL~~~L~~~~ 32 (205)
T d2qn6a3 11 IGVVGHVDHGKTTLVQAITGIW 32 (205)
T ss_dssp EEEECSTTSSHHHHHHHHHSCC
T ss_pred EEEEEccCCcHHHHHHHHHhhh
Confidence 5999999999999999887643
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=85.51 E-value=0.2 Score=44.96 Aligned_cols=21 Identities=24% Similarity=0.597 Sum_probs=18.9
Q ss_pred EEEEEcCCCchHHHHHHHHHh
Q 047286 95 TVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~ 115 (632)
-++|+|...+|||||++.|.+
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~ 30 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITG 30 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHS
T ss_pred EEEEEEccCCcHHHHHHHHHh
Confidence 489999999999999998864
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=85.44 E-value=0.2 Score=45.33 Aligned_cols=19 Identities=21% Similarity=0.541 Sum_probs=17.5
Q ss_pred EEEEcCCCchHHHHHHHHH
Q 047286 96 VALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 96 ~~ivG~sGsGKSTLl~ll~ 114 (632)
+.|.||+|||||-|++.++
T Consensus 39 l~l~G~~G~GKTHLl~A~~ 57 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAG 57 (213)
T ss_dssp EEEECSSSSSHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 5799999999999999986
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=85.40 E-value=0.19 Score=50.95 Aligned_cols=20 Identities=20% Similarity=0.587 Sum_probs=18.4
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 047286 95 TVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~ 114 (632)
-+.++||+|||||-|.+.|.
T Consensus 51 NILliGPTGvGKTlLAr~LA 70 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLA 70 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999997
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=85.28 E-value=0.18 Score=50.70 Aligned_cols=17 Identities=29% Similarity=0.599 Sum_probs=15.4
Q ss_pred EEEEEecCCCChHHHHH
Q 047286 507 TVALVGENGNGKSTVIS 523 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ 523 (632)
.+.|+|+||||||++++
T Consensus 52 H~~I~G~tGsGKT~~l~ 68 (433)
T d1e9ra_ 52 HLLVNGATGTGKSVLLR 68 (433)
T ss_dssp CEEEEECTTSSHHHHHH
T ss_pred eEEEEeCCCCcHHHHHH
Confidence 57999999999999875
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=84.78 E-value=0.22 Score=46.95 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=19.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHH
Q 047286 93 GTTVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 93 Ge~~~ivG~sGsGKSTLl~ll~ 114 (632)
..+++|+|..|.|||||++.+.
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~ 65 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQAL 65 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3589999999999999998764
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=84.75 E-value=0.17 Score=46.12 Aligned_cols=34 Identities=26% Similarity=0.363 Sum_probs=23.6
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCCcHHhhcceEEEccc
Q 047286 95 TVALVGQSGSGKSTVINLVESFRFYAPEAEQEKIGLVSKE 134 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~~~~~~~~~~r~~i~~v~Q~ 134 (632)
++.|.|.=|||||||++-+. +... .++++++-.+
T Consensus 5 v~iitGFLGaGKTTll~~lL--~~~~----~~riaVI~Ne 38 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHIL--NEQH----GYKIAVIENE 38 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHH--HSCC----CCCEEEECSS
T ss_pred EEEEeeCCCCCHHHHHHHHH--hcCC----CCcEEEEEec
Confidence 57899999999999999665 2211 1357766544
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=84.73 E-value=0.25 Score=42.31 Aligned_cols=22 Identities=32% Similarity=0.277 Sum_probs=19.0
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
.+.+.|+=||||||+++-+.+-
T Consensus 35 ii~L~G~LGaGKTtfvr~~~~~ 56 (158)
T d1htwa_ 35 MVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEecCCCccHHHHHHHHHhh
Confidence 4589999999999999877763
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=84.73 E-value=0.2 Score=48.22 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=19.3
Q ss_pred EEEEEcCCCchHHHHHHHHHhC
Q 047286 95 TVALVGQSGSGKSTVINLVESF 116 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~~ 116 (632)
-+||||..-+|||||+|.|.+.
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred cEeEECCCCCCHHHHHHHHHCC
Confidence 3899999999999999999754
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.69 E-value=0.23 Score=43.68 Aligned_cols=20 Identities=40% Similarity=0.579 Sum_probs=17.6
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 047286 95 TVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~ 114 (632)
.+.++|..|+|||||++-+.
T Consensus 4 Kiv~lG~~~vGKTsll~r~~ 23 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMR 23 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47899999999999998764
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=84.15 E-value=0.25 Score=47.13 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhC
Q 047286 94 TTVALVGQSGSGKSTVINLVESF 116 (632)
Q Consensus 94 e~~~ivG~sGsGKSTLl~ll~~~ 116 (632)
=.+||||...+|||||++.+.+.
T Consensus 11 ~kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 11 LKTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHCC
Confidence 35999999999999999999743
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=84.10 E-value=0.22 Score=47.04 Aligned_cols=26 Identities=15% Similarity=0.134 Sum_probs=22.0
Q ss_pred EEEeeEEEEEecCCCChHHHHHhhhc
Q 047286 502 IVFEHTVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 502 I~f~~~vaIVG~SGsGKSTL~~ll~r 527 (632)
|--+++++|+|++|+|||||+..+.+
T Consensus 40 igrGQr~~I~g~~g~GKT~l~~~i~~ 65 (289)
T d1xpua3 40 IGRGQRGLIVAPPKAGKTMLLQNIAQ 65 (289)
T ss_dssp CBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred ccCCCeeeEeCCCCCCHHHHHHHHHH
Confidence 34456899999999999999988876
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=83.87 E-value=0.24 Score=44.79 Aligned_cols=20 Identities=25% Similarity=0.512 Sum_probs=17.5
Q ss_pred EEEEecCCCChHHHHHhhhc
Q 047286 508 VALVGENGNGKSTVISLAER 527 (632)
Q Consensus 508 vaIVG~SGsGKSTL~~ll~r 527 (632)
+-|.||+|||||-|++.++.
T Consensus 39 l~l~G~~G~GKTHLl~A~~~ 58 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGN 58 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 36999999999999988775
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=83.57 E-value=0.24 Score=44.14 Aligned_cols=20 Identities=25% Similarity=0.476 Sum_probs=18.0
Q ss_pred EEEEecCCCChHHHHHhhhc
Q 047286 508 VALVGENGNGKSTVISLAER 527 (632)
Q Consensus 508 vaIVG~SGsGKSTL~~ll~r 527 (632)
|||+|+-.+|||||+..|.+
T Consensus 6 i~iiGHvd~GKSTL~~~l~~ 25 (196)
T d1d2ea3 6 VGTIGHVDHGKTTLTAAITK 25 (196)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHH
Confidence 79999999999999997764
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=83.52 E-value=0.25 Score=43.88 Aligned_cols=21 Identities=29% Similarity=0.537 Sum_probs=18.0
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
-+.+||++|.|||+++.-|.+
T Consensus 45 n~lLvG~pGVGKTalv~~LA~ 65 (195)
T d1jbka_ 45 NPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEecCCcccHHHHHHHHH
Confidence 457999999999999986665
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=83.45 E-value=0.23 Score=49.83 Aligned_cols=20 Identities=25% Similarity=0.527 Sum_probs=17.3
Q ss_pred CEEEEEcCCCchHHHHHHHH
Q 047286 94 TTVALVGQSGSGKSTVINLV 113 (632)
Q Consensus 94 e~~~ivG~sGsGKSTLl~ll 113 (632)
..+.|+|++|||||++++.+
T Consensus 51 ~H~~I~G~tGsGKT~~l~~l 70 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLREL 70 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHH
T ss_pred ceEEEEeCCCCcHHHHHHHH
Confidence 45899999999999998744
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=83.14 E-value=0.25 Score=46.29 Aligned_cols=21 Identities=33% Similarity=0.439 Sum_probs=17.9
Q ss_pred EEEEEecCCCChHHHHHhhhc
Q 047286 507 TVALVGENGNGKSTVISLAER 527 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r 527 (632)
-+.+||++|.|||+|+.-|.+
T Consensus 41 n~lLVG~~GvGKTalv~~la~ 61 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAW 61 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEECCCCCcHHHHHHHHHH
Confidence 457999999999999986665
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=82.12 E-value=0.28 Score=47.39 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=19.0
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
.|+|=|+-||||||+++.|...
T Consensus 6 rI~IEG~iGsGKTTl~~~La~~ 27 (329)
T d1e2ka_ 6 RVYIDGPHGMGKTTTTQLLVAL 27 (329)
T ss_dssp EEEECSCTTSSHHHHHHHHTC-
T ss_pred EEEEECCcCCCHHHHHHHHHHH
Confidence 4789999999999999999764
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=82.03 E-value=0.26 Score=45.99 Aligned_cols=20 Identities=35% Similarity=0.346 Sum_probs=17.1
Q ss_pred eeEEEEEecCCCChHHHHHh
Q 047286 505 EHTVALVGENGNGKSTVISL 524 (632)
Q Consensus 505 ~~~vaIVG~SGsGKSTL~~l 524 (632)
++.+.|+|++|+||||++--
T Consensus 29 g~~~~i~G~~G~GKS~l~l~ 48 (274)
T d1nlfa_ 29 GTVGALVSPGGAGKSMLALQ 48 (274)
T ss_dssp TSEEEEEESTTSSHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHH
Confidence 56679999999999999753
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=81.85 E-value=0.14 Score=42.15 Aligned_cols=21 Identities=29% Similarity=0.401 Sum_probs=18.3
Q ss_pred eeCCCEEEEEcCCCchHHHHH
Q 047286 90 VPSGTTVALVGQSGSGKSTVI 110 (632)
Q Consensus 90 i~~Ge~~~ivG~sGsGKSTLl 110 (632)
+++|+.+.|..|.|||||+.+
T Consensus 4 l~~~~~~il~~~tGsGKT~~~ 24 (140)
T d1yksa1 4 LKKGMTTVLDFHPGAGKTRRF 24 (140)
T ss_dssp TSTTCEEEECCCTTSSTTTTH
T ss_pred HHcCCcEEEEcCCCCChhHHH
Confidence 478999999999999999654
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=81.82 E-value=0.33 Score=43.14 Aligned_cols=19 Identities=26% Similarity=0.508 Sum_probs=17.3
Q ss_pred EEEEcCCCchHHHHHHHHH
Q 047286 96 VALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 96 ~~ivG~sGsGKSTLl~ll~ 114 (632)
+||+|..++|||||++.|.
T Consensus 6 i~iiGHvd~GKSTL~~~l~ 24 (196)
T d1d2ea3 6 VGTIGHVDHGKTTLTAAIT 24 (196)
T ss_dssp EEEESSTTSSHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHH
Confidence 7999999999999999764
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=81.68 E-value=0.2 Score=48.55 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=20.3
Q ss_pred EEEEEecCCCChHHHHHhhhcCCC
Q 047286 507 TVALVGENGNGKSTVISLAERFHN 530 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y~ 530 (632)
.+-|+|+.|+|||||++.+..+.+
T Consensus 30 ~vLl~G~pG~GKT~lar~~~~iLp 53 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALAALLP 53 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSC
T ss_pred eEEEECCCCccHHHHHHHHHHhCC
Confidence 467999999999999998877653
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=81.50 E-value=0.35 Score=44.27 Aligned_cols=20 Identities=25% Similarity=0.542 Sum_probs=17.5
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 047286 95 TVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~ 114 (632)
.+.|.||+|+||||+.+++.
T Consensus 36 ~~Ll~Gp~G~GKtt~a~~~~ 55 (239)
T d1njfa_ 36 AYLFSGTRGVGKTSIARLLA 55 (239)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHH
Confidence 46788999999999999875
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=81.12 E-value=0.4 Score=45.10 Aligned_cols=21 Identities=33% Similarity=0.529 Sum_probs=19.4
Q ss_pred EEEEEcCCCchHHHHHHHHHh
Q 047286 95 TVALVGQSGSGKSTVINLVES 115 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~~ 115 (632)
.+||||-.-+|||||++.|.+
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~ 24 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTK 24 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHC
Confidence 589999999999999999974
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=81.01 E-value=0.31 Score=47.83 Aligned_cols=24 Identities=17% Similarity=0.156 Sum_probs=20.8
Q ss_pred EEEEEecCCCChHHHHHhhhcCCC
Q 047286 507 TVALVGENGNGKSTVISLAERFHN 530 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y~ 530 (632)
.+-++||.|+||||+++.|+++..
T Consensus 156 ~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 156 YWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 457999999999999999998643
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=80.89 E-value=0.34 Score=44.40 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=18.6
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
.+-|.||+|+||||+++++.+.
T Consensus 36 ~~Ll~Gp~G~GKtt~a~~~~~~ 57 (239)
T d1njfa_ 36 AYLFSGTRGVGKTSIARLLAKG 57 (239)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3568999999999999987764
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=80.88 E-value=0.32 Score=46.80 Aligned_cols=21 Identities=19% Similarity=0.330 Sum_probs=18.4
Q ss_pred EEEEecCCCChHHHHHhhhcC
Q 047286 508 VALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 508 vaIVG~SGsGKSTL~~ll~r~ 528 (632)
+-++||||+|||.+++.|.+.
T Consensus 56 ~lf~Gp~G~GKt~lak~la~~ 76 (315)
T d1qvra3 56 FLFLGPTGVGKTELAKTLAAT 76 (315)
T ss_dssp EEEBSCSSSSHHHHHHHHHHH
T ss_pred EEEECCCcchHHHHHHHHHHH
Confidence 468999999999999988764
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=80.84 E-value=0.38 Score=46.56 Aligned_cols=22 Identities=32% Similarity=0.264 Sum_probs=19.6
Q ss_pred EEEEEecCCCChHHHHHhhhcC
Q 047286 507 TVALVGENGNGKSTVISLAERF 528 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~ 528 (632)
.|.|=|+-||||||+++.|...
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~ 29 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASA 29 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSG
T ss_pred EEEEECCccCCHHHHHHHHHHH
Confidence 5788999999999999998864
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=80.57 E-value=0.38 Score=46.48 Aligned_cols=23 Identities=26% Similarity=0.242 Sum_probs=20.0
Q ss_pred EEEEEecCCCChHHHHHhhhcCC
Q 047286 507 TVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
.|.|=|+-||||||+++.|...+
T Consensus 7 rI~IEG~iGsGKSTl~~~L~~~l 29 (331)
T d1osna_ 7 RIYLDGAYGIGKTTAAEEFLHHF 29 (331)
T ss_dssp EEEEEESSSSCTTHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999988643
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=80.52 E-value=0.42 Score=44.87 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.6
Q ss_pred EEEEEecCCCChHHHHHhhhcCC
Q 047286 507 TVALVGENGNGKSTVISLAERFH 529 (632)
Q Consensus 507 ~vaIVG~SGsGKSTL~~ll~r~y 529 (632)
+++|||..-+|||||++.|.+-.
T Consensus 114 ~v~vvG~PNvGKSsliN~L~~~~ 136 (273)
T d1puja_ 114 RALIIGIPNVGKSTLINRLAKKN 136 (273)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEEecCccchhhhhhhhhccc
Confidence 47999999999999999998854
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=80.37 E-value=0.53 Score=42.10 Aligned_cols=20 Identities=15% Similarity=0.341 Sum_probs=17.9
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 047286 95 TVALVGQSGSGKSTVINLVE 114 (632)
Q Consensus 95 ~~~ivG~sGsGKSTLl~ll~ 114 (632)
.+.+.||.|+||||+.+.+.
T Consensus 26 ~lLl~Gp~G~GKtt~a~~~a 45 (207)
T d1a5ta2 26 ALLIQALPGMGDDALIYALS 45 (207)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 47889999999999999875
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=80.30 E-value=0.34 Score=45.24 Aligned_cols=27 Identities=22% Similarity=0.379 Sum_probs=23.0
Q ss_pred ccEEEeeEEEEEecCCCChHHHHHhhh
Q 047286 500 GDIVFEHTVALVGENGNGKSTVISLAE 526 (632)
Q Consensus 500 g~I~f~~~vaIVG~SGsGKSTL~~ll~ 526 (632)
|-|+.+..+-|.||+||||||++--++
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~ 75 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVI 75 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHH
T ss_pred CCccCceEEEEecCCCcHHHHHHHHHH
Confidence 678888899999999999999975444
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=80.10 E-value=0.39 Score=43.60 Aligned_cols=18 Identities=28% Similarity=0.593 Sum_probs=16.6
Q ss_pred EEEEcCCCchHHHHHHHH
Q 047286 96 VALVGQSGSGKSTVINLV 113 (632)
Q Consensus 96 ~~ivG~sGsGKSTLl~ll 113 (632)
++++|..++|||||+..|
T Consensus 6 i~viGHVd~GKTTL~~~L 23 (224)
T d1jnya3 6 LIVIGHVDHGKSTLVGRL 23 (224)
T ss_dssp EEEEESTTSSHHHHHHHH
T ss_pred EEEEecCCCCHHHHHHHH
Confidence 799999999999999865
|