Citrus Sinensis ID: 047317


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------30
MEETLKALESSLSHIKWRLKSSSKLRLEIDILALCTGMRPVIMVDYGGKMPELQEHLCELLKRCQKESPSFEHLRVMVIEDMIYLIHVKGLAEYVSSSLSSEAELHFVDLEQDPPKMITLKEKSSVGMQLISVQKLFSLVFPLNGMTDEIRLPNRTDHTIEATSSNITISPQSTEVVDLSSCICDSQVTIPTLNGWLLGYPVVYLFDKEHIADAIYNLSTQSLRIFKILVTRNGPFSKGSMPEELMSFSVPYELSMEGSNEPWAEMFLAKMQSKWAKCKPTWRTLQMEVSECFPQAIAL
cHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHHHHHHccccccEEEEEEccEEEEEEHHHHHHHHHHHccccccEEEEEcccccccccHHccccHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHccccccccccccEEccccccccccccHHHHHHHHccccEEEEEEcccccHHHcccccccEEEEEEEEEEccccccccccEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHcccccccEEEEEccccccccc
cHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccEEEEEcccccHHHHHHHHHHHHHHHHHcHHHHHHEEEEHHHHHHHHHHHHHHHHccccccccccEEEEEccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEEcccccccccccccEEEcHHccccccccccccccHHccccEEEEEccHHHHHHHHHHcccccEEEEEEEEEcccccccccHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHcHHHHHHEEEHccccccEEEc
MEETLKALESSLSHIKWRLKSSSKLRLEIDILALCTgmrpvimvdyggkmpELQEHLCELLKRCqkespsfeHLRVMVIEDMIYLIHVKGLAEYVSSslsseaelhfvdleqdppkmitlkeKSSVGMQLISVQKLFSLvfplngmtdeirlpnrtdhtieatssnitispqstevvdlsscicdsqvtiptlngwllgypvvylfdKEHIADAIYNLSTQSLRIFKILVtrngpfskgsmpeelmsfsvpyelsmegsnePWAEMFLAKMQSkwakckptwrtLQMEVSECFPQAIAL
MEETLKALESSLSHIKwrlksssklrLEIDILALCTGMRPVIMVDYGGKMPELQEHLCELLKRCQKESPSFEHLRVMVIEDMIYLIHVKGLAEYVSSSLSSEAELHFVDLEQDPPKMITLKEKSSVGMQLISVQKLFSLVFPLNGMTDEIRLPNRTDHTIEatssnitispqstEVVDLSSCICDSQVTIPTLNGWLLGYPVVYLFDKEHIADAIYNLSTQSLRIFKILVTRNGPFSKGSMPEELMSFSVPYELSMEGSNEPWAEMFLAKMQSKWAKCKPTWRTLQMEVSECFPQAIAL
MEETLKALESSLSHIKWRLKSSSKLRLEIDILALCTGMRPVIMVDYGGKMPELQEHLCELLKRCQKESPSFEHLRVMVIEDMIYLIHVKGLAEYVSSSLSSEAELHFVDLEQDPPKMITLKEKSSVGMQLISVQKLFSLVFPLNGMTDEIRLPNRTDHTIEATSSNITISPQSTEVVDLSSCICDSQVTIPTLNGWLLGYPVVYLFDKEHIADAIYNLSTQSLRIFKILVTRNGPFSKGSMPEELMSFSVPYELSMEGSNEPWAEMFLAKMQSKWAKCKPTWRTLQMEVSECFPQAIAL
*************HIKWRLKSSSKLRLEIDILALCTGMRPVIMVDYGGKMPELQEHLCELLKRCQKESPSFEHLRVMVIEDMIYLIHVKGLAEYVSSSL***AELHFVDL**************SVGMQLISVQKLFSLVFPLNGMTDEIRLPNR****I******ITIS*QSTEVVDLSSCICDSQVTIPTLNGWLLGYPVVYLFDKEHIADAIYNLSTQSLRIFKILVTRNG***************************PWAEMFLAKMQSKWAKCKPTWRTLQMEVSECF******
***TLK*****************KLRLEIDILALCTGMRPVIMVDYGGKMPELQEHLCELLKRCQKESPSFEHLRVMVIEDMIYLIHVKGLAEYVSSSLSSEAELHFVDLEQDPPKMITLKEKSSVGMQLISVQKLFSLVFPLNGMTDEIRLPNRTD**********************SSCICDSQVTIPTLNGWLLGYPVVYLFDKEHIADAIYNLSTQSLRIFKILVTRNGP****SMPEELMSFSVPYELSMEGSNEPWAEMFLAKMQSKWAKCKPTWRTLQMEVSECFPQAIAL
*********SSLSHIKWRLKSSSKLRLEIDILALCTGMRPVIMVDYGGKMPELQEHLCELLKRCQKESPSFEHLRVMVIEDMIYLIHVKGLAEYVSSSLSSEAELHFVDLEQDPPKMITLKEKSSVGMQLISVQKLFSLVFPLNGMTDEIRLPNRTDHTIEATSSNITISPQSTEVVDLSSCICDSQVTIPTLNGWLLGYPVVYLFDKEHIADAIYNLSTQSLRIFKILVTRNGPFSKGSMPEELMSFSVPYELSMEGSNEPWAEMFLAKMQSKWAKCKPTWRTLQMEVSECFPQAIAL
MEETLKALESSLSHIKWRLKSSSKLRLEIDILALCTGMRPVIMVDYGGKMPELQEHLCELLKRCQKESPSFEHLRVMVIEDMIYLIHVKGLAEYVSSSLSSEAELHFVDLEQDPPKMITLKEKSSVGMQLISVQKLFSLVFPLNGMTDEIRLPNRTDHTIEATSS******QSTEVVDLSSCICDSQVTIPTLNGWLLGYPVVYLFDKEHIADAIYNLSTQSLRIFKILVTRNGPFSKGSMPEELMSFSVPYELSMEGSNEPWAEMFLAKMQSKWAKCKPTWRTLQMEVSECFPQAIAL
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEETLKALESSLSHIKWRLKSSSKLRLEIDILALCTGMRPVIMVDYGGKMPELQEHLCELLKRCQKESPSFEHLRVMVIEDMIYLIHVKGLAEYVSSSLSSEAELHFVDLEQDPPKMITLKEKSSVGMQLISVQKLFSLVFPLNGMTDEIRLPNRTDHTIEATSSNITISPQSTEVVDLSSCICDSQVTIPTLNGWLLGYPVVYLFDKEHIADAIYNLSTQSLRIFKILVTRNGPFSKGSMPEELMSFSVPYELSMEGSNEPWAEMFLAKMQSKWAKCKPTWRTLQMEVSECFPQAIAL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query299 2.2.26 [Sep-21-2011]
Q07G87263 UPF0739 protein C1orf74 h yes no 0.672 0.764 0.225 0.0001
Q5PQ92262 UPF0739 protein C1orf74 h N/A no 0.685 0.782 0.225 0.0001
>sp|Q07G87|CA074_XENTR UPF0739 protein C1orf74 homolog OS=Xenopus tropicalis GN=TEgg073c16.1 PE=2 SV=1 Back     alignment and function desciption
 Score = 47.4 bits (111), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/248 (22%), Positives = 101/248 (40%), Gaps = 47/248 (18%)

Query: 12  LSHIKWRLKSSSK------LRLEIDILALCTGMRPVIMVDYGGKMPELQEHLCELLKRCQ 65
           LS  ++ LK + +      L L  +ILA+  G++P  + DY     +    +C  LK  Q
Sbjct: 10  LSAARYHLKETKRMSMMVALNLAAEILAVDCGLKPCFLYDYTTSGVQ---QICSYLKELQ 66

Query: 66  KESPSFEHLRVMVIEDMIYLIHVKGLAEYVSSSLSSEAELHFVDLEQ--DPPKMITLKEK 123
                  HL ++ IE+ I +I+V     Y+ + L S+ +LH +D+      P++++  + 
Sbjct: 67  NLGLIVGHLHILNIEETILIINVTKAVSYLETLLHSQ-DLHLIDVSNYLSQPELVSSNQV 125

Query: 124 SSVGMQLISVQKLFSLVFPLNGMTDEIRLPNRTDHTIEATSSNITISPQSTEVVDLSSCI 183
             +  QL    +L   + P                         +  P S  V  + S  
Sbjct: 126 PQIHAQL---AELLGHIKPYQ-----------------------SGQPASVSVGGIQS-- 157

Query: 184 CDSQVTIPTLNGWLLGYPVVYLFDKEHIADAIYNLSTQSLRIFKILVTRNGPFSKGSMPE 243
              +  + T+ G+ L +P  Y FD +   +    LS   LR+F +    +     G    
Sbjct: 158 --PEWNLCTMFGFFLQFPSTYWFDTQKGFENC--LSFTPLRLFTVQANCS---RIGHQSV 210

Query: 244 ELMSFSVP 251
           ++ SF+VP
Sbjct: 211 QIYSFTVP 218





Xenopus tropicalis (taxid: 8364)
>sp|Q5PQ92|CA074_XENLA UPF0739 protein C1orf74 homolog OS=Xenopus laevis PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query299
255585333323 hypothetical protein RCOM_0453040 [Ricin 1.0 0.925 0.663 1e-116
224133178300 predicted protein [Populus trichocarpa] 1.0 0.996 0.673 1e-114
225433920304 PREDICTED: uncharacterized protein LOC10 0.993 0.976 0.664 1e-109
297743807329 unnamed protein product [Vitis vinifera] 0.966 0.878 0.655 1e-105
186511192293 uncharacterized protein [Arabidopsis tha 0.959 0.979 0.614 2e-98
449437793303 PREDICTED: uncharacterized protein LOC10 0.993 0.980 0.596 9e-95
388494568305 unknown [Lotus japonicus] 0.993 0.973 0.58 1e-94
255648387303 unknown [Glycine max] 0.979 0.966 0.547 1e-89
356557166303 PREDICTED: uncharacterized protein LOC10 0.979 0.966 0.544 6e-89
357454487293 hypothetical protein MTR_2g098960 [Medic 0.963 0.982 0.548 2e-87
>gi|255585333|ref|XP_002533364.1| hypothetical protein RCOM_0453040 [Ricinus communis] gi|223526804|gb|EEF29026.1| hypothetical protein RCOM_0453040 [Ricinus communis] Back     alignment and taxonomy information
 Score =  422 bits (1085), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 211/318 (66%), Positives = 244/318 (76%), Gaps = 19/318 (5%)

Query: 1   MEETLKALESSLSHIKWRLKSSSKLRLEIDILALCTGMRPVIMVDYGGKMPELQEHLCEL 60
           +E+ L+ L+SSLSHIKWRLKS +K RL+ID+LALCT MRPVIMVDYGGKMPELQEHLC L
Sbjct: 6   VEQLLRILDSSLSHIKWRLKSHAKHRLQIDVLALCTEMRPVIMVDYGGKMPELQEHLCAL 65

Query: 61  LKRCQKESPSFEHLRVMVIEDMIYLIHVKGLAEYVSSSLSSEAELHFVDLEQDPPKMITL 120
           L+ CQ+ESP FEHL+VM+IEDMIYLIHVKGL EYV SSL+SE +L FV+LEQDPPKM+T 
Sbjct: 66  LRLCQQESPIFEHLKVMIIEDMIYLIHVKGLVEYVKSSLNSEVDLVFVNLEQDPPKMVTQ 125

Query: 121 KEKSSVGMQLISVQKLFSLVFPLN-------------GMTDEI-----RLPNRTDHTIEA 162
            E SS+   L+ VQKLFSL  P+N               +D +      + N  D    A
Sbjct: 126 AENSSLNAALVRVQKLFSLYLPVNENVSPCHLTETAANASDNVANAADSVANAADSVASA 185

Query: 163 TSS-NITISPQSTEVVDLSSCICDSQVTIPTLNGWLLGYPVVYLFDKEHIADAIYNLSTQ 221
            SS N  I  QS+E +D SSC+ DS+VT+PTLNGWLLGYPVVYLF KEHIADAIYNLST+
Sbjct: 186 ESSINKPIISQSSEFIDFSSCMQDSEVTVPTLNGWLLGYPVVYLFSKEHIADAIYNLSTK 245

Query: 222 SLRIFKILVTRNGPFSKGSMPEELMSFSVPYELSMEGSNEPWAEMFLAKMQSKWAKCKPT 281
            LRIF+ILV+RN   +K S PEELMSFSVPYELSM GS EPWAE FLA+MQS+W K K  
Sbjct: 246 YLRIFQILVSRNISPNKASRPEELMSFSVPYELSMGGSKEPWAEAFLAQMQSRWEKSKQI 305

Query: 282 WRTLQMEVSECFPQAIAL 299
           WRTLQMEVSEC+PQAI L
Sbjct: 306 WRTLQMEVSECYPQAIVL 323




Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133178|ref|XP_002327979.1| predicted protein [Populus trichocarpa] gi|222837388|gb|EEE75767.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225433920|ref|XP_002268334.1| PREDICTED: uncharacterized protein LOC100267873 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297743807|emb|CBI36690.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|186511192|ref|NP_001118858.1| uncharacterized protein [Arabidopsis thaliana] gi|332646411|gb|AEE79932.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449437793|ref|XP_004136675.1| PREDICTED: uncharacterized protein LOC101208537 [Cucumis sativus] gi|449494722|ref|XP_004159628.1| PREDICTED: uncharacterized LOC101208537 [Cucumis sativus] Back     alignment and taxonomy information
>gi|388494568|gb|AFK35350.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|255648387|gb|ACU24644.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356557166|ref|XP_003546889.1| PREDICTED: uncharacterized protein LOC100793633 [Glycine max] Back     alignment and taxonomy information
>gi|357454487|ref|XP_003597524.1| hypothetical protein MTR_2g098960 [Medicago truncatula] gi|355486572|gb|AES67775.1| hypothetical protein MTR_2g098960 [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query299
TAIR|locus:2097568293 AT3G59490 "AT3G59490" [Arabido 0.959 0.979 0.617 6.3e-92
ZFIN|ZDB-GENE-050417-227259 zgc:112163 "zgc:112163" [Danio 0.344 0.397 0.318 0.00027
TAIR|locus:2097568 AT3G59490 "AT3G59490" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 916 (327.5 bits), Expect = 6.3e-92, P = 6.3e-92
 Identities = 184/298 (61%), Positives = 227/298 (76%)

Query:     2 EETLKALESSLSHIKWRLKSSSKLRLEIDILALCTGMRPVIMVDYGGKMPELQEHLCELL 61
             EE L+ L S LS IKWRLKS+SK RLEID+LALCTGMRPV+M+DYGGKMPELQ  L  LL
Sbjct:     7 EELLQFLSSCLSQIKWRLKSNSKRRLEIDVLALCTGMRPVVMIDYGGKMPELQNRLLSLL 66

Query:    62 KRCQKESPSFEHLRVMVIEDMIYLIHVKGLAEYVSSSLSSEAELHFVDLEQDPPKMITLK 121
             +  ++  P F+ L+VMVIEDMIYLI+V+ L ++VSSSL SE EL F+DLEQDPPKM+T  
Sbjct:    67 ELIREGLPVFKDLKVMVIEDMIYLINVRSLPKFVSSSLDSEPELFFIDLEQDPPKMVTQS 126

Query:   122 EKSSVGMQLISVQKLFSLVFPLNGMTDEIRLPNRTDHTIEATSSNITISPQSTEVVDLSS 181
             ++S++GMQL S+QKLFS  FPL    D+    + TD T     +N   S Q++  +DLS 
Sbjct:   127 KESNLGMQLRSIQKLFSSTFPL----DD----SNTDTTTVLDEAN---SSQTSLCIDLSC 175

Query:   182 CICDSQVTIPTLNGWLLGYPVVYLFDKEHIADAIYNLSTQSLRIFKILVTRNGPFSKGSM 241
             C+ D++VTIPTLNGWLL YPVVYLF  +HI +AIYNLST+SLR+FK+LV RNG   K S 
Sbjct:   176 CLQDTKVTIPTLNGWLLDYPVVYLFGTDHIEEAIYNLSTKSLRLFKVLVCRNGTTEKDSH 235

Query:   242 PEELMSFSVPYELSMEGSNEPWAEMFLAKMQSKWAKCKPTWRTLQMEVSECFPQAIAL 299
              EEL SFSVPY+LSMEGS E WAE FL +M S+W +CK  WR+L ++VSEC+PQAI L
Sbjct:   236 LEELTSFSVPYDLSMEGSKEVWAEKFLERMSSRWEECKHIWRSLDLQVSECYPQAIVL 293




GO:0003674 "molecular_function" evidence=ND
GO:0005739 "mitochondrion" evidence=ISM
GO:0008150 "biological_process" evidence=ND
ZFIN|ZDB-GENE-050417-227 zgc:112163 "zgc:112163" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 299
PF14953270 DUF4504: Domain of unknown function (DUF4504) 100.0
>PF14953 DUF4504: Domain of unknown function (DUF4504) Back     alignment and domain information
Probab=100.00  E-value=1.2e-71  Score=519.88  Aligned_cols=263  Identities=41%  Similarity=0.628  Sum_probs=230.9

Q ss_pred             HHHHHhhcccccccchhhhhHHHHHHHhcCCceeEEeecCCC-hHHHHHHHHHHHHHhhhcCC-CCCCeEEEEECCeEEE
Q 047317            8 LESSLSHIKWRLKSSSKLRLEIDILALCTGMRPVIMVDYGGK-MPELQEHLCELLKRCQKESP-SFEHLRVMVIEDMIYL   85 (299)
Q Consensus         8 ~~~~~~~~~~rl~~~~~~~La~dVlaV~~GLRPAvL~Dy~~~-~~qlq~~L~~LL~~~q~~~~-~~~~Lrvl~i~d~i~l   85 (299)
                      .++|++++|||+++++|++|++||+||++|||||+||||+++ ++|+|+||++|+.++++... .+++||||+|+||+||
T Consensus         2 ~~~~~~~~~~~l~~~~~~~L~~dilaV~~GLRpa~L~Dy~~~~~~~lq~~L~~L~~~~~q~~~~~~~~L~vl~I~~~~~l   81 (270)
T PF14953_consen    2 QRTCLMGKRWRLSSSSCLRLARDILAVCSGLRPAVLYDYNGAGAPQLQEYLCSLLRLAQQESGLLFQNLRVLVIDDNILL   81 (270)
T ss_pred             hhhhhCcCCcCCcHHHHHHHHHHHHHHHcCCccEEEEEcCCCCHHHHHHHHHHhhhhhhcccchhccceEEEEEcCcEEE
Confidence            578999999999999999999999999999999999999999 55999999999999887655 8999999999999999


Q ss_pred             EehhHHHHHHHhhccCCCceEEEEccCCC--CccccccccchHHHHHHHHHHHhhccccCCCCcccccCCCCCccccccc
Q 047317           86 IHVKGLAEYVSSSLSSEAELHFVDLEQDP--PKMITLKEKSSVGMQLISVQKLFSLVFPLNGMTDEIRLPNRTDHTIEAT  163 (299)
Q Consensus        86 In~~~l~e~l~~~l~s~~~~~FVDvs~s~--P~l~~~~e~~~~~~~l~~i~~~~~~~f~~~~~~~~~r~~~~~~~~~~~~  163 (299)
                      ||++++++|+++++.++..  ||||+.+.  |++++.++.+++++++++++++|++   ..          ..+    ++
T Consensus        82 vn~~~~~~~le~~l~s~~~--lvdVs~~~~~P~l~~~~~~~~~~~~l~~i~~~l~~---~~----------~~~----~~  142 (270)
T PF14953_consen   82 VNPKELLEHLESSLRSNDL--LVDVSLSLSPPKLCSQDQESDLKSQLQSIQDHLSQ---FN----------ASN----NN  142 (270)
T ss_pred             EeHHHHHHHHHHHhcCCCE--EEEEeCCCCCCccccccchhHHHHHHHHHHHHHhh---hc----------ccc----cc
Confidence            9999999999999998644  55555555  9999998889999999999999996   11          001    00


Q ss_pred             CCccccCCCCcceecCCCcccCCCccccceeeeecCCceEEEecCCCchhhhccccCCceEEEEEEEEecCCCCCCCCce
Q 047317          164 SSNITISPQSTEVVDLSSCICDSQVTIPTLNGWLLGYPVVYLFDKEHIADAIYNLSTQSLRIFKILVTRNGPFSKGSMPE  243 (299)
Q Consensus       164 s~~~~~s~~~~~viDls~~l~~s~~~lpTL~G~LLGYPVvY~f~~~~~~~n~~cLS~~pL~vf~v~v~~~~~~~~~~~~~  243 (299)
                         .+........+|+++++++++||+||||||||||||||||++++.++|  ||||+||+||+|.++++....++++++
T Consensus       143 ---~~~~~~~~~~~~~~~~l~~~~~nl~TL~G~LLGYPvvY~f~~~~~~~n--cLs~~pL~V~~v~~~~~~~~~~~~~~~  217 (270)
T PF14953_consen  143 ---ASELSESSESIDSSSGLESSDWNLPTLFGWLLGYPVVYWFDQEQSSDN--CLSMTPLRVFTVQASRSWLSDQPQHRE  217 (270)
T ss_pred             ---cchhcccccccccccccccCCCCcchhhhhhhCCCEEEEeccccchhh--hhccCceEEEEEEEeccccccCcccce
Confidence               122233445578889999999999999999999999999999999999  999999999999996554455566899


Q ss_pred             eEEeeecccccCCCCC--chhHHHHHHHHHHHHhhhccccceeeeeeeeeeecccccC
Q 047317          244 ELMSFSVPYELSMEGS--NEPWAEMFLAKMQSKWAKCKPTWRTLQMEVSECFPQAIAL  299 (299)
Q Consensus       244 ~L~SFSVP~~L~~~~~--~e~W~~~fl~~~~~k~~~~~~~w~~~~~ev~~~~~~~~~~  299 (299)
                      +|||||||++|++++.  +|+|+++|+++|+++     ++|++++|++|+|++||++|
T Consensus       218 ~L~SFSvP~~L~~~~~~~le~W~~~l~~~~~~q-----~~~~~l~~~~~~~~~~sv~l  270 (270)
T PF14953_consen  218 ELYSFSVPESLFPELSSHLENWIESLLERFQQQ-----NVWADLSISSETVTLPSVVL  270 (270)
T ss_pred             eEEEeeCchhhccCccHHHHHHHHHHHHHHHhh-----cCCCceEEEEEEEeccceeC
Confidence            9999999999999554  599999999999997     99999999999999999987




Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query299
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-09
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 57.9 bits (139), Expect = 1e-09
 Identities = 54/343 (15%), Positives = 107/343 (31%), Gaps = 92/343 (26%)

Query: 1   MEETLKALESS--LSHIKWRLKSS---SKLRLEIDILALCTG-------MRPVIMVDYG- 47
           +++  K++ S   + HI   + S    S        L L          +  V+ ++Y  
Sbjct: 38  VQDMPKSILSKEEIDHI---IMSKDAVSGTLRLFWTL-LSKQEEMVQKFVEEVLRINYKF 93

Query: 48  --------GKMPELQEHL-CELLKRCQKESPSFEHLRVMVIEDMIYLI-HVKGL--AEYV 95
                    + P +   +  E   R   ++  F    V  ++  + L   +  L  A+ V
Sbjct: 94  LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV 153

Query: 96  S---------SSLSSEAELHFVDLEQDPPKMI---TLKEKSSVGMQLISVQKLFSLVFPL 143
                     + ++ +       ++      I    LK  +S    L  +QKL   + P 
Sbjct: 154 LIDGVLGSGKTWVALDV-CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP- 211

Query: 144 NGMTDEIRLPNRTDHTIEATSSNITISPQSTEVVD--LSSCICDSQVTIPTLNGWLLGYP 201
                     +R+DH     SSNI         +   L   +                Y 
Sbjct: 212 -------NWTSRSDH-----SSNI---KLRIHSIQAELRRLLKSKP------------YE 244

Query: 202 VVYLFDKEHIADAIYNLSTQSLRIF----KILV-TRNGPFSKGSMPEELMSFSVPYELSM 256
              L     +   + N        F    KIL+ TR    +      + +S +    +S+
Sbjct: 245 NCLL-----VLLNVQNAKA--WNAFNLSCKILLTTRFKQVT------DFLSAATTTHISL 291

Query: 257 EGSNEPWAEMFLAKMQSKWAKCKPTWRTLQMEVSECFPQAIAL 299
           +  +       +  +  K+  C+P    L  EV    P+ +++
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQ--DLPREVLTTNPRRLSI 332


Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00