Citrus Sinensis ID: 047317
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 299 | ||||||
| 255585333 | 323 | hypothetical protein RCOM_0453040 [Ricin | 1.0 | 0.925 | 0.663 | 1e-116 | |
| 224133178 | 300 | predicted protein [Populus trichocarpa] | 1.0 | 0.996 | 0.673 | 1e-114 | |
| 225433920 | 304 | PREDICTED: uncharacterized protein LOC10 | 0.993 | 0.976 | 0.664 | 1e-109 | |
| 297743807 | 329 | unnamed protein product [Vitis vinifera] | 0.966 | 0.878 | 0.655 | 1e-105 | |
| 186511192 | 293 | uncharacterized protein [Arabidopsis tha | 0.959 | 0.979 | 0.614 | 2e-98 | |
| 449437793 | 303 | PREDICTED: uncharacterized protein LOC10 | 0.993 | 0.980 | 0.596 | 9e-95 | |
| 388494568 | 305 | unknown [Lotus japonicus] | 0.993 | 0.973 | 0.58 | 1e-94 | |
| 255648387 | 303 | unknown [Glycine max] | 0.979 | 0.966 | 0.547 | 1e-89 | |
| 356557166 | 303 | PREDICTED: uncharacterized protein LOC10 | 0.979 | 0.966 | 0.544 | 6e-89 | |
| 357454487 | 293 | hypothetical protein MTR_2g098960 [Medic | 0.963 | 0.982 | 0.548 | 2e-87 |
| >gi|255585333|ref|XP_002533364.1| hypothetical protein RCOM_0453040 [Ricinus communis] gi|223526804|gb|EEF29026.1| hypothetical protein RCOM_0453040 [Ricinus communis] | Back alignment and taxonomy information |
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Score = 422 bits (1085), Expect = e-116, Method: Compositional matrix adjust.
Identities = 211/318 (66%), Positives = 244/318 (76%), Gaps = 19/318 (5%)
Query: 1 MEETLKALESSLSHIKWRLKSSSKLRLEIDILALCTGMRPVIMVDYGGKMPELQEHLCEL 60
+E+ L+ L+SSLSHIKWRLKS +K RL+ID+LALCT MRPVIMVDYGGKMPELQEHLC L
Sbjct: 6 VEQLLRILDSSLSHIKWRLKSHAKHRLQIDVLALCTEMRPVIMVDYGGKMPELQEHLCAL 65
Query: 61 LKRCQKESPSFEHLRVMVIEDMIYLIHVKGLAEYVSSSLSSEAELHFVDLEQDPPKMITL 120
L+ CQ+ESP FEHL+VM+IEDMIYLIHVKGL EYV SSL+SE +L FV+LEQDPPKM+T
Sbjct: 66 LRLCQQESPIFEHLKVMIIEDMIYLIHVKGLVEYVKSSLNSEVDLVFVNLEQDPPKMVTQ 125
Query: 121 KEKSSVGMQLISVQKLFSLVFPLN-------------GMTDEI-----RLPNRTDHTIEA 162
E SS+ L+ VQKLFSL P+N +D + + N D A
Sbjct: 126 AENSSLNAALVRVQKLFSLYLPVNENVSPCHLTETAANASDNVANAADSVANAADSVASA 185
Query: 163 TSS-NITISPQSTEVVDLSSCICDSQVTIPTLNGWLLGYPVVYLFDKEHIADAIYNLSTQ 221
SS N I QS+E +D SSC+ DS+VT+PTLNGWLLGYPVVYLF KEHIADAIYNLST+
Sbjct: 186 ESSINKPIISQSSEFIDFSSCMQDSEVTVPTLNGWLLGYPVVYLFSKEHIADAIYNLSTK 245
Query: 222 SLRIFKILVTRNGPFSKGSMPEELMSFSVPYELSMEGSNEPWAEMFLAKMQSKWAKCKPT 281
LRIF+ILV+RN +K S PEELMSFSVPYELSM GS EPWAE FLA+MQS+W K K
Sbjct: 246 YLRIFQILVSRNISPNKASRPEELMSFSVPYELSMGGSKEPWAEAFLAQMQSRWEKSKQI 305
Query: 282 WRTLQMEVSECFPQAIAL 299
WRTLQMEVSEC+PQAI L
Sbjct: 306 WRTLQMEVSECYPQAIVL 323
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224133178|ref|XP_002327979.1| predicted protein [Populus trichocarpa] gi|222837388|gb|EEE75767.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|225433920|ref|XP_002268334.1| PREDICTED: uncharacterized protein LOC100267873 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|297743807|emb|CBI36690.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|186511192|ref|NP_001118858.1| uncharacterized protein [Arabidopsis thaliana] gi|332646411|gb|AEE79932.1| uncharacterized protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|449437793|ref|XP_004136675.1| PREDICTED: uncharacterized protein LOC101208537 [Cucumis sativus] gi|449494722|ref|XP_004159628.1| PREDICTED: uncharacterized LOC101208537 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|388494568|gb|AFK35350.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
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| >gi|255648387|gb|ACU24644.1| unknown [Glycine max] | Back alignment and taxonomy information |
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| >gi|356557166|ref|XP_003546889.1| PREDICTED: uncharacterized protein LOC100793633 [Glycine max] | Back alignment and taxonomy information |
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| >gi|357454487|ref|XP_003597524.1| hypothetical protein MTR_2g098960 [Medicago truncatula] gi|355486572|gb|AES67775.1| hypothetical protein MTR_2g098960 [Medicago truncatula] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 299 | ||||||
| TAIR|locus:2097568 | 293 | AT3G59490 "AT3G59490" [Arabido | 0.959 | 0.979 | 0.617 | 6.3e-92 | |
| ZFIN|ZDB-GENE-050417-227 | 259 | zgc:112163 "zgc:112163" [Danio | 0.344 | 0.397 | 0.318 | 0.00027 |
| TAIR|locus:2097568 AT3G59490 "AT3G59490" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 916 (327.5 bits), Expect = 6.3e-92, P = 6.3e-92
Identities = 184/298 (61%), Positives = 227/298 (76%)
Query: 2 EETLKALESSLSHIKWRLKSSSKLRLEIDILALCTGMRPVIMVDYGGKMPELQEHLCELL 61
EE L+ L S LS IKWRLKS+SK RLEID+LALCTGMRPV+M+DYGGKMPELQ L LL
Sbjct: 7 EELLQFLSSCLSQIKWRLKSNSKRRLEIDVLALCTGMRPVVMIDYGGKMPELQNRLLSLL 66
Query: 62 KRCQKESPSFEHLRVMVIEDMIYLIHVKGLAEYVSSSLSSEAELHFVDLEQDPPKMITLK 121
+ ++ P F+ L+VMVIEDMIYLI+V+ L ++VSSSL SE EL F+DLEQDPPKM+T
Sbjct: 67 ELIREGLPVFKDLKVMVIEDMIYLINVRSLPKFVSSSLDSEPELFFIDLEQDPPKMVTQS 126
Query: 122 EKSSVGMQLISVQKLFSLVFPLNGMTDEIRLPNRTDHTIEATSSNITISPQSTEVVDLSS 181
++S++GMQL S+QKLFS FPL D+ + TD T +N S Q++ +DLS
Sbjct: 127 KESNLGMQLRSIQKLFSSTFPL----DD----SNTDTTTVLDEAN---SSQTSLCIDLSC 175
Query: 182 CICDSQVTIPTLNGWLLGYPVVYLFDKEHIADAIYNLSTQSLRIFKILVTRNGPFSKGSM 241
C+ D++VTIPTLNGWLL YPVVYLF +HI +AIYNLST+SLR+FK+LV RNG K S
Sbjct: 176 CLQDTKVTIPTLNGWLLDYPVVYLFGTDHIEEAIYNLSTKSLRLFKVLVCRNGTTEKDSH 235
Query: 242 PEELMSFSVPYELSMEGSNEPWAEMFLAKMQSKWAKCKPTWRTLQMEVSECFPQAIAL 299
EEL SFSVPY+LSMEGS E WAE FL +M S+W +CK WR+L ++VSEC+PQAI L
Sbjct: 236 LEELTSFSVPYDLSMEGSKEVWAEKFLERMSSRWEECKHIWRSLDLQVSECYPQAIVL 293
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| ZFIN|ZDB-GENE-050417-227 zgc:112163 "zgc:112163" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 299 | |||
| PF14953 | 270 | DUF4504: Domain of unknown function (DUF4504) | 100.0 |
| >PF14953 DUF4504: Domain of unknown function (DUF4504) | Back alignment and domain information |
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Probab=100.00 E-value=1.2e-71 Score=519.88 Aligned_cols=263 Identities=41% Similarity=0.628 Sum_probs=230.9
Q ss_pred HHHHHhhcccccccchhhhhHHHHHHHhcCCceeEEeecCCC-hHHHHHHHHHHHHHhhhcCC-CCCCeEEEEECCeEEE
Q 047317 8 LESSLSHIKWRLKSSSKLRLEIDILALCTGMRPVIMVDYGGK-MPELQEHLCELLKRCQKESP-SFEHLRVMVIEDMIYL 85 (299)
Q Consensus 8 ~~~~~~~~~~rl~~~~~~~La~dVlaV~~GLRPAvL~Dy~~~-~~qlq~~L~~LL~~~q~~~~-~~~~Lrvl~i~d~i~l 85 (299)
.++|++++|||+++++|++|++||+||++|||||+||||+++ ++|+|+||++|+.++++... .+++||||+|+||+||
T Consensus 2 ~~~~~~~~~~~l~~~~~~~L~~dilaV~~GLRpa~L~Dy~~~~~~~lq~~L~~L~~~~~q~~~~~~~~L~vl~I~~~~~l 81 (270)
T PF14953_consen 2 QRTCLMGKRWRLSSSSCLRLARDILAVCSGLRPAVLYDYNGAGAPQLQEYLCSLLRLAQQESGLLFQNLRVLVIDDNILL 81 (270)
T ss_pred hhhhhCcCCcCCcHHHHHHHHHHHHHHHcCCccEEEEEcCCCCHHHHHHHHHHhhhhhhcccchhccceEEEEEcCcEEE
Confidence 578999999999999999999999999999999999999999 55999999999999887655 8999999999999999
Q ss_pred EehhHHHHHHHhhccCCCceEEEEccCCC--CccccccccchHHHHHHHHHHHhhccccCCCCcccccCCCCCccccccc
Q 047317 86 IHVKGLAEYVSSSLSSEAELHFVDLEQDP--PKMITLKEKSSVGMQLISVQKLFSLVFPLNGMTDEIRLPNRTDHTIEAT 163 (299)
Q Consensus 86 In~~~l~e~l~~~l~s~~~~~FVDvs~s~--P~l~~~~e~~~~~~~l~~i~~~~~~~f~~~~~~~~~r~~~~~~~~~~~~ 163 (299)
||++++++|+++++.++.. ||||+.+. |++++.++.+++++++++++++|++ .. ..+ ++
T Consensus 82 vn~~~~~~~le~~l~s~~~--lvdVs~~~~~P~l~~~~~~~~~~~~l~~i~~~l~~---~~----------~~~----~~ 142 (270)
T PF14953_consen 82 VNPKELLEHLESSLRSNDL--LVDVSLSLSPPKLCSQDQESDLKSQLQSIQDHLSQ---FN----------ASN----NN 142 (270)
T ss_pred EeHHHHHHHHHHHhcCCCE--EEEEeCCCCCCccccccchhHHHHHHHHHHHHHhh---hc----------ccc----cc
Confidence 9999999999999998644 55555555 9999998889999999999999996 11 001 00
Q ss_pred CCccccCCCCcceecCCCcccCCCccccceeeeecCCceEEEecCCCchhhhccccCCceEEEEEEEEecCCCCCCCCce
Q 047317 164 SSNITISPQSTEVVDLSSCICDSQVTIPTLNGWLLGYPVVYLFDKEHIADAIYNLSTQSLRIFKILVTRNGPFSKGSMPE 243 (299)
Q Consensus 164 s~~~~~s~~~~~viDls~~l~~s~~~lpTL~G~LLGYPVvY~f~~~~~~~n~~cLS~~pL~vf~v~v~~~~~~~~~~~~~ 243 (299)
.+........+|+++++++++||+||||||||||||||||++++.++| ||||+||+||+|.++++....++++++
T Consensus 143 ---~~~~~~~~~~~~~~~~l~~~~~nl~TL~G~LLGYPvvY~f~~~~~~~n--cLs~~pL~V~~v~~~~~~~~~~~~~~~ 217 (270)
T PF14953_consen 143 ---ASELSESSESIDSSSGLESSDWNLPTLFGWLLGYPVVYWFDQEQSSDN--CLSMTPLRVFTVQASRSWLSDQPQHRE 217 (270)
T ss_pred ---cchhcccccccccccccccCCCCcchhhhhhhCCCEEEEeccccchhh--hhccCceEEEEEEEeccccccCcccce
Confidence 122233445578889999999999999999999999999999999999 999999999999996554455566899
Q ss_pred eEEeeecccccCCCCC--chhHHHHHHHHHHHHhhhccccceeeeeeeeeeecccccC
Q 047317 244 ELMSFSVPYELSMEGS--NEPWAEMFLAKMQSKWAKCKPTWRTLQMEVSECFPQAIAL 299 (299)
Q Consensus 244 ~L~SFSVP~~L~~~~~--~e~W~~~fl~~~~~k~~~~~~~w~~~~~ev~~~~~~~~~~ 299 (299)
+|||||||++|++++. +|+|+++|+++|+++ ++|++++|++|+|++||++|
T Consensus 218 ~L~SFSvP~~L~~~~~~~le~W~~~l~~~~~~q-----~~~~~l~~~~~~~~~~sv~l 270 (270)
T PF14953_consen 218 ELYSFSVPESLFPELSSHLENWIESLLERFQQQ-----NVWADLSISSETVTLPSVVL 270 (270)
T ss_pred eEEEeeCchhhccCccHHHHHHHHHHHHHHHhh-----cCCCceEEEEEEEeccceeC
Confidence 9999999999999554 599999999999997 99999999999999999987
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Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 299 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-09 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
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Score = 57.9 bits (139), Expect = 1e-09
Identities = 54/343 (15%), Positives = 107/343 (31%), Gaps = 92/343 (26%)
Query: 1 MEETLKALESS--LSHIKWRLKSS---SKLRLEIDILALCTG-------MRPVIMVDYG- 47
+++ K++ S + HI + S S L L + V+ ++Y
Sbjct: 38 VQDMPKSILSKEEIDHI---IMSKDAVSGTLRLFWTL-LSKQEEMVQKFVEEVLRINYKF 93
Query: 48 --------GKMPELQEHL-CELLKRCQKESPSFEHLRVMVIEDMIYLI-HVKGL--AEYV 95
+ P + + E R ++ F V ++ + L + L A+ V
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV 153
Query: 96 S---------SSLSSEAELHFVDLEQDPPKMI---TLKEKSSVGMQLISVQKLFSLVFPL 143
+ ++ + ++ I LK +S L +QKL + P
Sbjct: 154 LIDGVLGSGKTWVALDV-CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP- 211
Query: 144 NGMTDEIRLPNRTDHTIEATSSNITISPQSTEVVD--LSSCICDSQVTIPTLNGWLLGYP 201
+R+DH SSNI + L + Y
Sbjct: 212 -------NWTSRSDH-----SSNI---KLRIHSIQAELRRLLKSKP------------YE 244
Query: 202 VVYLFDKEHIADAIYNLSTQSLRIF----KILV-TRNGPFSKGSMPEELMSFSVPYELSM 256
L + + N F KIL+ TR + + +S + +S+
Sbjct: 245 NCLL-----VLLNVQNAKA--WNAFNLSCKILLTTRFKQVT------DFLSAATTTHISL 291
Query: 257 EGSNEPWAEMFLAKMQSKWAKCKPTWRTLQMEVSECFPQAIAL 299
+ + + + K+ C+P L EV P+ +++
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQ--DLPREVLTTNPRRLSI 332
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Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00